BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781193|ref|YP_003065606.1| putative DNA polymerase from
bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62]
         (675 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 1410 bits (3651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 675/675 (100%), Positives = 675/675 (100%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA
Sbjct: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS
Sbjct: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS
Sbjct: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
           KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK
Sbjct: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS
Sbjct: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII
Sbjct: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
           SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA
Sbjct: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN
Sbjct: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA
Sbjct: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
           RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN
Sbjct: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
           IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG
Sbjct: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660

Query: 661 LPLKAEGYESKRYRK 675
           LPLKAEGYESKRYRK
Sbjct: 661 LPLKAEGYESKRYRK 675


>gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 673

 Score =  814 bits (2103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/677 (59%), Positives = 491/677 (72%), Gaps = 6/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  LFID ETRSP  L K G+  YAE+  + L A+  +D  ++LWDC  +PVMP  L + 
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++  V  VAHNS FER + K   N+ IP  RWICT  LAR NGLP++LK    ALK   
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG   E  YD  + NH +AW+LFGEYCK DV  TRE++KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E+ LW LDQ INDRGY +D+ L   L +++  ER KLD+EL++LT+G++ SSR  + 
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L  +LFL  GL L D+ E+T    LS    +T +A  + NNR+ +S+SA+LKLNTL  A+
Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALS-QPNITQRAKDILNNRLSSSQSAILKLNTLSGAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           + D RLRGTLQF GASRTGRWSGCVF PQNLPRP+ SHE +++ I    ++  SD DPL+
Sbjct: 300 SPDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIES--SNFPSD-DPLR 356

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
             SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGEQWKL AF  GED+Y T Y+++FN
Sbjct: 357 FASDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFN 416

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           +  + VTKDQRAIGKVMELALGYQGGA+ FQ MAS  GL+L  F+  +K  +  ++WE A
Sbjct: 417 IPLSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQA 476

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           +  C WMQE +PE A+ D FIGTACE VK AWR KH  V +LW +  +AF+  I++G++I
Sbjct: 477 QRRCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSI 536

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+   VP + MKK   N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKLT
Sbjct: 537 SARRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLT 596

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDILA GM+NAT+AGYDIVLTVHDEIVCETPDT EF++  L  LMT NP WA
Sbjct: 597 ENIVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWA 656

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+ RYRK
Sbjct: 657 KGLPLKAEGYEALRYRK 673


>gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 675

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/678 (58%), Positives = 490/678 (72%), Gaps = 6/678 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  LFID ETRSP  L K G+  YAE+  + L A+  +D  ++LWDC  +PVMP  L + 
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++  V  VAHNS FER + K   N+ IP  RWICT  LAR NGLP++LK    ALK   
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG   E  YD  + NH +AW+LFGEYCK DV  TRE++KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E+ LW LDQ INDRGY +D+ L   L +++  ER +LD+E + LT G++ S+R  + 
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNTLVEA 297
           L  +LFL TGL L D+ E+T    LS      PQ +  + NNR+ +S+SA+LKLNTL  A
Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQPD--IPQLSKAILNNRLSSSQSAILKLNTLSGA 298

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++ D RLRGTLQF GASRTGRWSGCVF PQNLPR + + +E++++I  L + +    DPL
Sbjct: 299 VSPDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIK-DPL 357

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
           +  SDCVRSC+IAS GKKL+VADLAGIEARVLAW+AGEQWKL AF  GED+Y T Y+++F
Sbjct: 358 RFASDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAF 417

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           NV  + VTKDQRAIGKVMELALGYQGGA+ FQKMAST GLNL  F+  +K  +  E+WE 
Sbjct: 418 NVPLSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQ 477

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           A+  C WMQE HPE A+ D FIGTACE VK+AWR KH  V +LW +  +AF+  I++G++
Sbjct: 478 AQRRCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRS 537

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
           I AR+   VP + MKK   N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKL
Sbjct: 538 ISARRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKL 597

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
           TENIVQA+SRDILA GM+NATKAGYDIVLTVHDEIVCE PDT EF++  L  LMT NP+W
Sbjct: 598 TENIVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTW 657

Query: 658 AKGLPLKAEGYESKRYRK 675
           AKGLPLKAEGYE+ RYRK
Sbjct: 658 AKGLPLKAEGYEAVRYRK 675


>gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1]
 gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1]
          Length = 675

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFC G      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL E +
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSETV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/677 (59%), Positives = 482/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFC G      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KG PLKAEGYE+KRYRK
Sbjct: 659 KGFPLKAEGYEAKRYRK 675


>gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/677 (59%), Positives = 482/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFC G      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPD   F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
          Length = 687

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 273/696 (39%), Positives = 394/696 (56%), Gaps = 38/696 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPHLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF      TG DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +A++   W  E+    +     E +FI  AC+ +K+ WR+ H    + W EL  
Sbjct: 483 PRDVIREAKS---WYNESVKHKSTFGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580
             E+T+   +  IA  ++ +   Y+K  +D   L + LPSGR++ Y        N +Y+ 
Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMG 590

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E PDT
Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDT 650

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++FN   L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11]
 gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11]
 gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1]
          Length = 687

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 273/696 (39%), Positives = 393/696 (56%), Gaps = 38/696 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF      TG DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +A++   W  E+    +     E +FI  AC+ +K+ WR+ H    + W EL  
Sbjct: 483 PRDVIREAKS---WYNESVKRKSTFGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580
             E+T+   +  IA  ++ +   Y+K  +D   L + LPSGR++ Y        N +Y+ 
Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E PDT
Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDT 650

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++FN   L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
 gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
          Length = 687

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 275/696 (39%), Positives = 392/696 (56%), Gaps = 38/696 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP AL  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF      TG DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +A++   W  E+    +     E +FI  AC+ +K+ WR+ H    + W EL  
Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580
             E T+   +  IA  ++ +   Y+K  +D   L + LPSGR++ Y        N +Y+ 
Sbjct: 536 --ECTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMG 590

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E+PDT
Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDT 650

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++FN   L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010]
          Length = 687

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 274/696 (39%), Positives = 393/696 (56%), Gaps = 38/696 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF      TG DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +A++   W  E+    +     E +FI  AC+ +K+ WR+ H    + W EL  
Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580
             E+T+   +  IA  ++ +   Y+K  +D   L + LPSGR++ Y        N +Y+ 
Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N+ +R+  R  TYGGKL ENI QA +RDILA  M     AGY IVLTVHDE++ E PDT
Sbjct: 591 VNSYSRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDT 650

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++FN   L  L++++P WA  +PL A G+E+  Y+K
Sbjct: 651 EDFNDKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718]
 gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718]
          Length = 687

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 274/696 (39%), Positives = 392/696 (56%), Gaps = 38/696 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF      TG DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +A++   W  E+    +     E +FI  AC+ +K+ WR+ H    + W EL  
Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580
             E T+   +  IA  ++ +   Y+K  +D   L + LPSGR++ Y        N +Y+ 
Sbjct: 536 --ECTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMG 590

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E+PDT
Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDT 650

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++FN   L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 687

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 274/696 (39%), Positives = 393/696 (56%), Gaps = 38/696 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF      TG DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +A++   W  E+    +     E +FI  AC+ +K+ WR+ H    + W EL  
Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580
             E+T+   +  IA  ++ +   Y+K  +D   L + LPSGR++ Y        N +Y+ 
Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N+ +R+  R  TYGGKL ENI QA +RDILA  M     AGY IVLTVHDE++ E PDT
Sbjct: 591 VNSYSRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDT 650

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++FN   L  L++++P WA  +PL A G+E+  Y+K
Sbjct: 651 EDFNDKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171]
 gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171]
          Length = 687

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 273/696 (39%), Positives = 393/696 (56%), Gaps = 38/696 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF      TG DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +A++   W  E+    +     E +FI  AC+ +K+ WR+ H    + W EL  
Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580
             E+T+   +  IA  ++ +   Y+K  +D   L + LPSGR++ Y        N +Y+ 
Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N+ +R+  R  TYGGKL ENI QA +RDILA  M     AGY IVLTVH+E++ E PDT
Sbjct: 591 VNSYSRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDT 650

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++FN   L  L++++P WA  +PL A G+E+  Y+K
Sbjct: 651 EDFNDKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605]
 gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605]
          Length = 687

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 271/696 (38%), Positives = 393/696 (56%), Gaps = 38/696 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCDIPINN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE+ KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPKWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C+IA  GKK+VV+DL+ IE R+LAW+AGE+WKL AF      TG DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +A++   W  E+    +     E +FI  AC+ +K+ WR+ H    + W EL  
Sbjct: 483 PRDVIREAKS---WYGESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580
             E+T+   +  IA  ++ +   Y+K  +D   L + LPSGR++ Y        N +Y+ 
Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E+PDT
Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDT 650

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++FN   L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
 gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 272/694 (39%), Positives = 384/694 (55%), Gaps = 34/694 (4%)

Query: 3   TLFIDFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           TL++D ET S  PI   K G   YAE V ++LFA+  +++ V++WD      +P  LK+A
Sbjct: 4   TLWLDLETFSEKPI---KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQA 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL--KL 118
           L + +  I AHNS+F+RT+L     + I + RW  T+V A ++GLP AL A+ E L   L
Sbjct: 61  LSDPNTIIYAHNSHFDRTMLNHS-GIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVPL 119

Query: 119 SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              K +EGK LI  FCK         R     H E W+ F  Y   D+   RE+ KRL  
Sbjct: 120 DKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLPS 179

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            +  + EL  W+ DQ INDRG  +D+ LA    + V++E+ +L +  + LT   V ++  
Sbjct: 180 WNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAATQ 239

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+ ++T +R ++      P   ++   R+++S ++  K   L+
Sbjct: 240 RDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLPLR-ELLAIRLQSSTTSTSKYKALM 298

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
             ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP+     +D+ I  L         
Sbjct: 299 NGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLIY 358

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDL 408
            D +Q+ S  +R C++A EGKKLVV+DL+ IE R+LAW+AGE WK+ AF       G DL
Sbjct: 359 DDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGADL 418

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YAR+FN++P  V K  R IGKVMEL LGY GG  AF   A T  L+L+  A     
Sbjct: 419 YKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAALP 478

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
           N  P+   DA ++ +   E    + + E +FI   C+ +K+ WR  H      W EL   
Sbjct: 479 NIPPKVKHDALSWYQKSVETKKTYGLSETVFI--TCDSLKRMWRNAHPETVSFWYELEDT 536

Query: 528 FEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYL--N 581
               I + G     RK +      +++DK  L ++LPSGR++ Y   R+     SY+  N
Sbjct: 537 VRHAISSPGITFPCRKLK------VRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVN 590

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
             +R+  R  TYGGKL EN+ QA +RD+LA  M      GYDIVLTVHDE++ E PD   
Sbjct: 591 PYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPA 650

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           FN   L  L+ +NP WA  LPL A G+E+  YRK
Sbjct: 651 FNHEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684


>gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1]
 gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1]
 gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1]
 gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1]
          Length = 688

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 273/698 (39%), Positives = 388/698 (55%), Gaps = 34/698 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+TLF+D ET   + + + G   YAE   V+LFA+  D+ PV +WD      MP  L+ A
Sbjct: 1   MSTLFLDLETYCEVPI-QNGTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59

Query: 61  LENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           L + +V + AHNS+F+RTVL+ A  +  + + RW  T+V A ++ LP AL  + + LK+ 
Sbjct: 60  LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119

Query: 120 SQKMEE--GKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           + K ++  GK+LI  FCK         R  +  H   W  F EY   D+   R I ++L 
Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179

Query: 177 PLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             + +  EL  W+LDQTINDRG  VD  LAH   + V+  +  L      +T G V ++ 
Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             + +   +    GL L D+ ++T +R ++ +  L  +  ++   R++AS ++  K  TL
Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIA-DPDLPAELRELLGIRLQASTTSTSKYKTL 298

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352
            + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP    + +++ I  L        
Sbjct: 299 AKGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLL 358

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGED 407
             + +++ S  +R C++A EGKKLVVADL+ IE R++AW+AGE WKL AF       G D
Sbjct: 359 FANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPD 418

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           LY   YA++F V+P  V KDQR IGKVMEL LGY+GG  AF   A+T G++L+  A    
Sbjct: 419 LYKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAW 478

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG----TACERVKKAWRQKHSRVSELWNE 523
            +   +   +AE F  W  E      + D  +       C+ +K+ WR+ H  VS  W E
Sbjct: 479 PSIPADIIAEAEQFLAWRTEQR----LGDFGLKPKTFVVCDALKRLWRRAHPAVSSFWKE 534

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSY 579
           L +A    +            D   +  ++D   L + LPSGR L Y     D     SY
Sbjct: 535 LEEAARLAVLRPGTTY-----DCRTLKARRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSY 589

Query: 580 L--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           +  N  +R+ +R  TYGGKL EN+ QA SRD+LA  M     AGY IVL+VHDE + E  
Sbjct: 590 MGVNQYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEAD 649

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           D DEF+A+ L  LM +NP WA GLPL A G+E+ RYRK
Sbjct: 650 DRDEFSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687


>gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703]
          Length = 699

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 272/714 (38%), Positives = 388/714 (54%), Gaps = 62/714 (8%)

Query: 4   LFIDFET--RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L+ D ET   +PI   K G   YAE V V++  +  +D PV  WD      MP+ LK  L
Sbjct: 5   LWFDSETFCETPI---KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP------IHRWICTLVLARSNGLPSALKAVGEA 115
           ++  + I A NS+F+RT+++     D+P      I RW  T+V A ++GLP  L  + E 
Sbjct: 62  QDPSIEIYAQNSHFDRTMMRH----DMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEI 117

Query: 116 LKLSSQKME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIF 172
           L ++  K +  EGK LI  FCK         R     H E W+ F +Y   D+   R I 
Sbjct: 118 LGITQDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAID 177

Query: 173 KRLEPL---SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           K+L P+     KE  LW+ DQ INDRG  +D  LA      V  E+  L +  ++LT   
Sbjct: 178 KKL-PVWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNE 236

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           V ++   + L   +    G+ L D+ ++T +R ++ + +L     ++   R++AS ++  
Sbjct: 237 VQAATQRDALLRHIVESFGVDLPDMQKSTLERRIA-DPELPSVLRELLAIRLQASTTSTS 295

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           K  TL++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP    E +D  I  L   
Sbjct: 296 KYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAG 355

Query: 350 ITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF----- 402
                  + +++IS  +R C++A +GKKLVV+DL+ IE RVLAW+AGE+WKL+AF     
Sbjct: 356 CADLLFDNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDT 415

Query: 403 -----ETGE------DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
                E GE      DLY   YAR+FN++P  VTK QR IGKVMEL LG+ GG  AF   
Sbjct: 416 IIGYDEGGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTF 475

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVK 507
           A   GL+L+  A+    N       +A++   W Q +  +       E +FI  AC+ +K
Sbjct: 476 ALVYGLDLDELANAALPNVPTSIQREAQS---WYQASVKQKRTFGLSEQVFI--ACDSLK 530

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGK-AIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           + WR  H      W+E+     + I N K   + RK +      +++D + L + LPSGR
Sbjct: 531 RMWRNAHPETVSFWSEIENTVRRAIINPKQTFVCRKLK------IRRDGSWLRIQLPSGR 584

Query: 567 SLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
           S+ Y  +   G+  SY+  NT +R+  R  TYGGKL EN  QA +RD++A  M      G
Sbjct: 585 SVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARG 644

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           Y+I LTVHDE++ E PDTD F +  L  L+ +NP WA  LPL A G+E+  YRK
Sbjct: 645 YEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698


>gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
 gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
          Length = 693

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/698 (36%), Positives = 386/698 (55%), Gaps = 36/698 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L++D ET S   + + G   YA +  ++L A+  DD PV + +      +P  L  AL +
Sbjct: 5   LWLDLETYSETPI-RNGTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALRD 63

Query: 64  TDVTIVAHNSYFERTVLKACF-NLDIP------IHRWICTLVLARSNGLPSALKAVGEAL 116
            +  + AHNS F+RTVL+    +   P      + RW  T+V A ++GLP +L  + + L
Sbjct: 64  GETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDIL 123

Query: 117 KLSSQKMEE--GKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ++  K ++  GK LI  FCK         R  K  H E W+ F +Y   D+   REI K
Sbjct: 124 GVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREIDK 183

Query: 174 RLEPL---SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +L P+    S E  LW+ DQ INDRG  +D  LA      V++E+ +L    + LT   V
Sbjct: 184 KL-PVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEV 242

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            ++   + L   +    G+ L D+  +T QR +S +  L  +  ++   R++AS ++  K
Sbjct: 243 QAATQRDVLLKHIVEAFGVTLPDMQASTIQRRVS-DPDLPIELRELLAIRLQASTTSTSK 301

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
             TL++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP    E +D  I  L    
Sbjct: 302 YKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGC 361

Query: 351 TS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----- 403
                 + +++IS  +R C++A EGKKLVV+DL+ IE R L W++GE+WKL+AF      
Sbjct: 362 ADLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAG 421

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           TG DLY+  YAR+FN++P  V K QR IGKVMEL LG+ GG  AF   A   GL+L+  A
Sbjct: 422 TGHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLA 481

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWN 522
                N       +A+++ +   +    + + E +FI  AC+ +K+ WR  H +    W 
Sbjct: 482 KAALPNVPASIQREAQSWYKASVKQKRTYGLSEQVFI--ACDSLKRMWRNAHPKTVSFWY 539

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---SY 579
           E+     + I   +     ++     + +++D + L + LPSGR++ Y  +  +    SY
Sbjct: 540 EIEDTVRRAIAAPRQTFTCRK-----LKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISY 594

Query: 580 L--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           +  N+ +R+  R  TYGGKLTEN+ QA +RD++A  M     +GY+I LTVHDE++ E P
Sbjct: 595 MGINSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAP 654

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DT++F +  L  L+ +NP WA  LPL A G+E+  YRK
Sbjct: 655 DTEQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692


>gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 669

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/685 (37%), Positives = 373/685 (54%), Gaps = 57/685 (8%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP- 89
           ++  +  +D PV  WD      MP+ LK  L++  + I A NS+F+RT+++     D+P 
Sbjct: 1   MIITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRH----DMPS 56

Query: 90  -----IHRWICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECL 142
                I RW  T+V A ++GLP  L  + E L ++  K +  EGK LI  FCK       
Sbjct: 57  VIAGGIERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNST 116

Query: 143 YDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL---SSKEQELWYLDQTINDRGYC 198
             R     H E W+ F +Y   D+   R I K+L P+     KE  LW+ DQ INDRG  
Sbjct: 117 IHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKL-PVWNYQGKELALWHFDQLINDRGVQ 175

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           +D  LA      V  E+  L +  ++LT   V ++   + L   +    G+ L D+ ++T
Sbjct: 176 MDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKST 235

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            +R ++ + +L     ++   R++AS ++  K  TL++ ++ DGRLRGTLQF GASRTGR
Sbjct: 236 LERRIA-DPELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGR 294

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKL 376
           W+G +F PQNLPRP    E +D  I  L          + +++IS  +R C++A +GKKL
Sbjct: 295 WAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKL 354

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAF----------ETGE------DLYVTTYARSFNVA 420
           VV+DL+ IE RVLAW+AGE+WKL+AF          E GE      DLY   YAR+FN++
Sbjct: 355 VVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNIS 414

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           P  VTK QR IGKVMEL LG+ GG  AF   A   GL+L+  A+    N       +A++
Sbjct: 415 PDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQS 474

Query: 481 FCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
              W Q +  +       E +FI  AC+ +K+ WR  H      W+E+     + I N K
Sbjct: 475 ---WYQASVKQKRTFGLSEQVFI--ACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPK 529

Query: 537 -AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTRE 590
              + RK +      +++D + L + LPSGRS+ Y  +   G+  SY+  NT +R+  R 
Sbjct: 530 QTFVCRKLK------IRRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRL 583

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            TYGGKL EN  QA +RD++A  M      GY+I LTVHDE++ E PDTD F +  L  L
Sbjct: 584 KTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSEL 643

Query: 651 MTSNPSWAKGLPLKAEGYESKRYRK 675
           + +NP WA  LPL A G+E+  YRK
Sbjct: 644 LATNPEWALDLPLSAGGFEAYHYRK 668


>gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 276/727 (37%), Positives = 377/727 (51%), Gaps = 67/727 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     +P  L  AL +
Sbjct: 11  LWGDLETYSPVPMAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  +DIP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL     
Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  +D  L     + V+  +  L Q  E+LT G V ++   + 
Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L    G+ L D+ + T  R +  +  L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVD-DPALPETVRELLSIRRQASSTSTAKYQALLHCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPD 355
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +      +  D D
Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFD-D 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET----------- 404
            + + S  +RSC+IA + KKLVVADL+ IE RVLAW+AGE  KL AF             
Sbjct: 367 VMALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTW 426

Query: 405 -----------------------------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                        G+D+Y   YA SF +AP  V+K+QR IGKV 
Sbjct: 427 HTGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAI 494
           ELALGY GG  AF   A+   ++L   A   +    P   + A     W + NH P   +
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMA--AQAALPPLLLQQATELLEWTKANHRPTFDL 544

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  
Sbjct: 545 SDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETA-----HTCCGITVQYR 598

Query: 555 KNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRD 608
           +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD
Sbjct: 599 RAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRD 658

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGY 668
           +LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+
Sbjct: 659 VLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGF 718

Query: 669 ESKRYRK 675
           ++ RYRK
Sbjct: 719 DTYRYRK 725


>gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 285/728 (39%), Positives = 381/728 (52%), Gaps = 69/728 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   D PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  ++IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F +Y + DV   R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297
           L   L  E G+ L D+ + T +R L  +  L P+ + ++ + R +AS ++  K   L+  
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +      +  D 
Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFD- 365

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF            
Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGT 425

Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         G+D+Y   YA SF +AP  VTK QR IGKV
Sbjct: 426 WHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   ++A     W + NH P   
Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMA--AQAALPPLLLQEATELLEWTKANHRPTFG 543

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L  A    I  G    A     + + Y   
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597

Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           D+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YESKRYRK 675
           +E+ RYRK
Sbjct: 718 FETHRYRK 725


>gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
 gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 726

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 285/728 (39%), Positives = 380/728 (52%), Gaps = 69/728 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  + IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DVT  R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297
           L   L    G+ L D+ + T +R L  +  L P+ + ++ + R +AS ++  K   L+  
Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +      +  D 
Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFD- 365

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF            
Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGT 425

Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         G+D+Y   YA SF +AP  VTK QR IGKV
Sbjct: 426 WHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   ++A     W + NH P   
Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMA--AQAALPPLLLQEATELLEWTKANHRPTFG 543

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L  A    I  G    A     + + Y   
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597

Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           D+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YESKRYRK 675
           +E+ RYRK
Sbjct: 718 FETHRYRK 725


>gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53]
 gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53]
          Length = 726

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 285/728 (39%), Positives = 379/728 (52%), Gaps = 69/728 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+     PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  + IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DVT  R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297
           L   L    G+ L D+ + T +R L  +  L P+ + ++ + R +AS ++  K   L+  
Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +      +  D 
Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFD- 365

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF            
Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGT 425

Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         G+D+Y   YA SF +AP  VTK QR IGKV
Sbjct: 426 WHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   ++A     W + NH P   
Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMA--AQAALPPLLLQEATELLEWTKANHRPTFG 543

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L  A    I  G    A     + + Y   
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597

Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           D+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YESKRYRK 675
           +E+ RYRK
Sbjct: 718 FETHRYRK 725


>gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 276/727 (37%), Positives = 377/727 (51%), Gaps = 67/727 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     +P  L  AL +
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  +DIP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PGVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL     
Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  +D  L     + V+  +  L Q  E+LT G V ++   + 
Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L    G+ L D+ + T  R +  +  L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVD-DPALPETVRELLSIRRQASSTSTAKYQALLHCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TSITSDPD 355
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +      +  D D
Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFD-D 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET----------- 404
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF             
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCW 426

Query: 405 -----------------------------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                        G+D+Y   YA SF +AP  V+K+QR IGKV 
Sbjct: 427 HTGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAI 494
           ELALGY GG  AF   A+   ++L   A   +    P   ++A     W + NH P   +
Sbjct: 487 ELALGYGGGVGAFAAFAALYHIDLEAMA--AQAVFPPLLLQEATELLEWTKANHRPTFDL 544

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  
Sbjct: 545 SDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETT-----HTCCGITVQYR 598

Query: 555 KNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRD 608
           +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD
Sbjct: 599 RAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRD 658

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGY 668
           +LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+
Sbjct: 659 VLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGF 718

Query: 669 ESKRYRK 675
           ++ RYRK
Sbjct: 719 DTYRYRK 725


>gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 284/728 (39%), Positives = 380/728 (52%), Gaps = 69/728 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE    +LFA+   D PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  ++IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F +Y + DV   R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297
           L   L    G+ L D+ + T +R L  +  L P+ + ++ + R +AS ++  K   L+  
Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +      +  D 
Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFD- 365

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL+AF            
Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGT 425

Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         GED+Y   YA SF +AP  VTK QR IGKV
Sbjct: 426 WHSGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   ++A    +W + NH P   
Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANHRPTFG 543

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L  A    I  G    A     + + Y   
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597

Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           D+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YESKRYRK 675
           +E+ RYRK
Sbjct: 718 FETHRYRK 725


>gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 280/728 (38%), Positives = 381/728 (52%), Gaps = 69/728 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  +DIP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297
           L   L  E G+ L D+ + T +R L  +  L P+ + ++ + R +AS ++  K   L+  
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +      +  D 
Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFD- 365

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF            
Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGT 425

Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         G+D+Y   YA SF +AP  VTK+QR IGKV
Sbjct: 426 WHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 485

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   ++A    +W + N  P   
Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFG 543

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L  A    I + +            + M+ 
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQY 597

Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 598 SRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           D+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YESKRYRK 675
           +++ RYRK
Sbjct: 718 FQTHRYRK 725


>gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 726

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 284/728 (39%), Positives = 381/728 (52%), Gaps = 69/728 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  +DIP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E  LW+LDQTINDRG  VD  LA      V+  +  L    E+LT G V ++   + 
Sbjct: 189 SGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297
           L   L  E G+ L D+ + T +R L  +  L P+ + ++ + R +AS ++  K   L+  
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +      +  D 
Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFD- 365

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF            
Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGT 425

Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         G+D+Y   YA SF +AP  VTK+QR IGKV
Sbjct: 426 WHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 485

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   ++A    +W + N  P   
Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFG 543

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L   F  T   G    A     + + Y   
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ--FAATDAIGHPETAHTCCGITVQY--- 597

Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           D+LA  M     AGY IVLTVHDE++ E  D   FNA+ L  LM + P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YESKRYRK 675
           +++ RYRK
Sbjct: 718 FQTHRYRK 725


>gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 282/728 (38%), Positives = 379/728 (52%), Gaps = 69/728 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   D PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  ++IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F +Y + DVT  R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297
           L   L  E G+ L D+ + T +R L  +  L P+ + ++ + R +AS ++  K   L+  
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
            + DGRLRGTLQF GASRTGRW+G +  P NLPRP+ S   +   I  +      +  D 
Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFD- 365

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF            
Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGT 425

Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         G+D+Y   YA SF +AP  VTK QR IGKV
Sbjct: 426 WHSGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   + A    +W + N  P   
Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQQAMEALQWTKANQRPTFG 543

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L  A    I  G    A     + + Y   
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597

Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 598 SRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           D+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG
Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717

Query: 668 YESKRYRK 675
           +E+ RYRK
Sbjct: 718 FETHRYRK 725


>gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 712

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 272/715 (38%), Positives = 369/715 (51%), Gaps = 69/715 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   D PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  ++IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F +Y + DVT  R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297
           L   L  E G+ L D+ + T +R L  +  L P+ + ++ + R +AS ++  K   L+  
Sbjct: 249 LLHHLSTEHGVVLPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +      +  D 
Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFD- 365

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL+AF            
Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGT 425

Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         G+D+Y   YA SF +AP  VTK+QR IGKV
Sbjct: 426 WHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 485

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   + A    +W + NH P   
Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQQAVEALQWTKANHRPTFG 543

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L  A    I  G    A     + + Y   
Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597

Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 598 SRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662
           D+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P   +G P
Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712


>gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407]
          Length = 598

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/600 (39%), Positives = 336/600 (56%), Gaps = 37/600 (6%)

Query: 100 ARS-NGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLYDR-NKPNHREAWR 155
           ARS  G   AL  + E L +   K +  EGK LI  FCK         R     H E WR
Sbjct: 11  ARSPGGSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWR 70

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDV 213
            F  Y   D+   RE++KRL   + +  EL  W+ DQ INDRG C+DV LA      VD 
Sbjct: 71  RFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQ 130

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           E+ +L +  + +T G V ++   + L   +    G+ L D+  +T +R ++ +  L    
Sbjct: 131 EQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAV 189

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++   R++AS ++  K   L++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS
Sbjct: 190 KELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPS 249

Query: 334 RSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
              E++D+ I  L          + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW
Sbjct: 250 LKQEQIDEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAW 309

Query: 392 MAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           +AGE+WKL AF      TG DLY   YA++F++AP  V K  R IGKVMEL LGY GG  
Sbjct: 310 LAGEEWKLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVS 369

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI----EDLFIGTA 502
           AF   A   GL+L+  A+    N   +   +A++   W  E+    +     E +FI  A
Sbjct: 370 AFITFALVYGLDLDGLANAALPNIPRDVIREAKS---WYDESVKRKSTYGLSERVFI--A 424

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLIL 560
           C+ +K+ WR+ H    + W EL    E T+   +  IA  ++ +   Y+K  +D   L +
Sbjct: 425 CDSLKRLWRRAHPATCDFWYEL----ECTV---RTAIATPQKTLYCGYLKIRRDGAWLRI 477

Query: 561 MLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            LPSGR++ Y        N +Y+  N+ +R+  R  TYGGKL EN+ QA +RD+LA  M 
Sbjct: 478 QLPSGRAVCYPSPVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMP 537

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               AGY IVLTVHDE++ E+PDT++FN   L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 538 LIEDAGYSIVLTVHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597


>gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
 gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
          Length = 704

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/716 (35%), Positives = 364/716 (50%), Gaps = 57/716 (7%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           A L++D ET S  DL + G  +YAE    +LFA+   D P  +WDC  +  M   L  A+
Sbjct: 3   APLWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTAEE-MHDELYHAM 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVLARSNGLPSALKAVGEALKL 118
           ++ D    AHN++F+RT+        +P     RW C++ +A S+ LP  L  +   LK+
Sbjct: 62  DDADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKV 121

Query: 119 SSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +   K+ +GK+L+  F + +       R  +  H   W  F +Y   D+T  RE  +R+
Sbjct: 122 PADMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRM 181

Query: 176 EPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +     +  W+LDQ IN RG+ VD AL     +    E+ ++      L+ G  +  
Sbjct: 182 PAWNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQFTPG 241

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           +  EK + +L    G  L++    T Q V+  +  L     ++    + +++++  K   
Sbjct: 242 Q-REKFRVYLGQRLGYELDNTQAGTFQ-VMLRDPGLPADVREMIELAIASNKTSTAKYAA 299

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITS 352
           L  A++ DGR RG LQF GASRT RW+G +F PQNLP R   S E ++  I HL     +
Sbjct: 300 LDPAVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHA 359

Query: 353 -DPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TG 405
              D L ++ +  +R CV+A+ GKKLVVADL+ IE RVLAW+A E+WKLKAF      TG
Sbjct: 360 LFFDNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTG 419

Query: 406 EDLYVTTYARSFNVAPAQVTKDQR-AIGKVMELALGYQGGAKAFQKMASTTGLNL----N 460
            DLY  T        P  V K  R A GKV +LA GYQGG   +Q  A + GL +    +
Sbjct: 420 PDLYNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWD 479

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG----TACERVKKAWRQKHSR 516
           T   +V      + WE   N   W    HP+  +E L I      A E  K AWR +H  
Sbjct: 480 TIQQMVPAQHVAKAWE---NLASW---GHPQ--LESLEIDEIEWVASETCKLAWRARHPA 531

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK----KDKNNLILMLPSGRSLVYRD 572
            S+ W  L  A +  I N  ++        P + ++    + +  L++ LPSGR L Y +
Sbjct: 532 TSKFWYALGGAAKDAIRNPGSVFTAG----PFIKLRTVSHRGQKWLVVRLPSGRFLTYFE 587

Query: 573 ---VGNNR----------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
              VG  R          S    TTRQ  R +T+GGK+T N  Q ++RDILA  M  A  
Sbjct: 588 PHIVGQGRDETIAYWGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAEN 647

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            GY  VL+VHDE + E PDTD+F A+ L  ++ +NP+WA  LPL A G+E+ RY+K
Sbjct: 648 RGYLPVLSVHDEALTEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703


>gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H]
          Length = 726

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 260/730 (35%), Positives = 363/730 (49%), Gaps = 59/730 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M+ LF+DFET S  DL K G   YAE     V++  + FDD PV++WDC +   MP  L 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            AL      N+ + +V HN S F+R ++K C+  DIP+   I T++ A  + LP +L A+
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +S+   K + GK LI RF K         R     H + W LF +Y   D+T  R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+F +L    + E E  +  LDQ INDRG+ VDVALA    + V+  + +L +E +    
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+    L     + +  ++T   +L+ +      A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             K N L+   +SD R RG +Q+ GA RT R++G  F PQNL R     +ELD+ I+ L 
Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356

Query: 348 TSITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTK---DQRAIGKVMELALGYQGGAKAFQKMASTTGLNL---- 459
           D+Y  T  + F + P  + K   D R IGK  EL LGY GG  AF + A   GL+L    
Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMT 476

Query: 460 ----NTFA-HLVKTNSAPEEW---EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                TF  H+    +   EW   ++A+   R  + +     I D  +   C+ +K+ WR
Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536

Query: 512 QKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNN-------LILMLP 563
           + H      W ++  A    I N GK   A  R       ++ D N        L + LP
Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596

Query: 564 SGRSLVYRDVGNNRSYL------------------NTTTRQLTREYTYGGKLTENIVQAV 605
           SGR + Y  VG + S                    N  TRQ   +YTY GKL EN  QA+
Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            RD+LA  ++N    GY IVL VHDEI+CETPD  E+N + L  LM   P WA+G PL A
Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716

Query: 666 EGYESKRYRK 675
           EG E KRY K
Sbjct: 717 EGAEMKRYAK 726


>gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G]
          Length = 726

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 260/730 (35%), Positives = 363/730 (49%), Gaps = 59/730 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M+ LF+DFET S  DL K G   YAE     V++  + FDD PV++WDC +   MP  L 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            AL      N+ + +V HN S F+R ++K C+  DIP+   I T++ A  + LP +L A+
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +S+   K + GK LI RF K         R     H + W LF +Y   D+T  R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+F +L    + E E  +  LDQ INDRG+ VDVALA    + V+  + +L +E +    
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+    L     + +  ++T   +L+ +      A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             K N L+   +SD R RG +Q+ GA RT R++G  F PQNL R     +ELD+ I+ L 
Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356

Query: 348 TSITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTK---DQRAIGKVMELALGYQGGAKAFQKMASTTGLNL---- 459
           D+Y  T  + F + P  + K   D R IGK  EL LGY GG  AF + A   GL+L    
Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476

Query: 460 ----NTFAHLVKTNSA-PEEW---EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                TF   +   +A   EW   ++A+   R  + +     I D  +   C+ +K+ WR
Sbjct: 477 KTMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536

Query: 512 QKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNN-------LILMLP 563
           + H      W ++  A    I N GK   A  R       ++ D N        L + LP
Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596

Query: 564 SGRSLVYRDVGNNRSYL------------------NTTTRQLTREYTYGGKLTENIVQAV 605
           SGR + Y  VG + S                    N  TRQ   +YTY GKL EN  QA+
Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            RD+LA  ++N    GY IVL VHDEI+CETPD  E+N + L  LM   P WA+G PL A
Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716

Query: 666 EGYESKRYRK 675
           EG E KRY K
Sbjct: 717 EGAEMKRYAK 726


>gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3]
 gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2]
          Length = 726

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 258/730 (35%), Positives = 361/730 (49%), Gaps = 59/730 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M+ LF+DFET S  DL K G   YAE     V++  + FDD  V++WDC     MP  L 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            AL      N+ + +V HN S F+R ++K C+  DIP+   I T++ A  + LP +L A+
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +S+   K + GK LI RF K         R     H + W LF +Y   D+T  R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+F +L    + E E  +  LDQ INDRG+ VDVALA    + V+  + +L +E +    
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+    L     + +  ++T   +L+ +      A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             K N L+   +SD R RG +Q+ GA RT R++G  F PQNL R     +ELD+ I+ L 
Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356

Query: 348 TSITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTK---DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           D+Y  T  + F + P  + K   D R IGK  EL LGY GG  AF + A   GL+L   A
Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476

Query: 464 ---------HLVKTNSAPEEW---EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                    H+    +   EW   ++A+   R  +++     I D  +   C+ +K+ WR
Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWR 536

Query: 512 QKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNN-------LILMLP 563
           + H      W ++  A    I N GK   A  R       ++ D N        L + LP
Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596

Query: 564 SGRSLVYRDVGNNRSYL------------------NTTTRQLTREYTYGGKLTENIVQAV 605
           SGR + Y  VG + S                    N  TRQ   +YTY GKL EN  QA+
Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            RD+LA  ++N    GY IVL VHDEI+CETPD  E+N + L  LM   P WA+G PL A
Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716

Query: 666 EGYESKRYRK 675
           EG E KRY K
Sbjct: 717 EGAEMKRYAK 726


>gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2]
 gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2]
 gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 993

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/614 (37%), Positives = 340/614 (55%), Gaps = 32/614 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK   ++
Sbjct: 5   LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL  + +   ++S K
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
            +  EGK LI+  CK         R     H E W+ F +Y   D+   REI++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           ++  E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   +
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L+++
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
           +++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D 
Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD- 361

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLY 409
           D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY
Sbjct: 362 DIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLY 421

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              YAR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     +
Sbjct: 422 KLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPH 481

Query: 470 SAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             P    +A ++ +   E    + + E +F+   C+ +K+ WR  H +    W ++  A 
Sbjct: 482 IPPGVKREATSWYQKSVETDKTYGLSEKIFVN--CDSLKRMWRNAHPQTVSFWYDIEDAV 539

Query: 529 EQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLNTT- 583
           +Q I++ G A   RK      + +++DK  L + LPSGRSL Y   R      +Y+ T  
Sbjct: 540 KQAIQSPGIAFKCRK------LSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNP 593

Query: 584 -TRQLTREYTYGGK 596
            +R+  R  TYGGK
Sbjct: 594 YSRKWERLKTYGGK 607



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENI QA +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  WA
Sbjct: 916 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 975

Query: 659 KGLPLKAEGYESKRYRK 675
             LPL A G+E+ RYRK
Sbjct: 976 WDLPLSANGFETYRYRK 992


>gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45
 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1]
          Length = 993

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/617 (37%), Positives = 341/617 (55%), Gaps = 38/617 (6%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK  L++
Sbjct: 5   LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL  + +   ++S K
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
            +  EGK LI+  CK         R     H E W+ F +Y   D+   REI++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           ++  E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   +
Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L+++
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIN-DPDIPPALRELLSVRLQSCTTSTSKYKALLKS 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
           +++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D 
Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD- 361

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLY 409
           D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY
Sbjct: 362 DIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLY 421

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              YAR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N
Sbjct: 422 KLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPN 481

Query: 470 SAPEEWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELH 525
             P    +A    RW Q   E    + + E +F+   C+ +K+ WR  H +    W ++ 
Sbjct: 482 IPPGVKREA---MRWYQKSVETDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIE 536

Query: 526 QAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLN 581
            A +Q I++ G A   RK      + +++DK+ L + LPSGRSL Y   R      +Y+ 
Sbjct: 537 DAVKQAIQSPGIAFKCRK------LSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMG 590

Query: 582 TT--TRQLTREYTYGGK 596
           T   +R+  R  TYGGK
Sbjct: 591 TNPYSRKWERLKTYGGK 607



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENI QA +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  WA
Sbjct: 916 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 975

Query: 659 KGLPLKAEGYESKRYRK 675
             LPL A G+E+ RYRK
Sbjct: 976 WDLPLSANGFETYRYRK 992


>gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU]
 gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF]
 gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS]
          Length = 735

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 256/737 (34%), Positives = 359/737 (48%), Gaps = 71/737 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDC----------VHDP 51
           LF+DFET S  DL K G   YAE     ++L ++ FDD P ++WD           + + 
Sbjct: 5   LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64

Query: 52  VMPQVLKEALENTD---VTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
             P  L   L       V +V HN   F+R +++ C  LDIP      T+V A  + LP 
Sbjct: 65  SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124

Query: 108 ALKAVGEALKLSSQ--KMEEGKELIARFCKGETHEC---LYDRNKPNHREAWRLFGEYCK 162
           +L  + E L + +   K + GK LI RFCK          YDRN   H + W+ F  Y +
Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRN--THPDEWKQFKHYAR 182

Query: 163 GDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            D+T  REI+ ++       KE E+  LDQ INDRG+ VD  LA      V   R +L +
Sbjct: 183 NDITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQE 242

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
             ++   G ++ +  L  L+    L    H+ +  ++T   +L        +A QV   R
Sbjct: 243 AAQATYGGGLTGADFLPLLRD---LAPAHHIPNAQKSTLGDLLDDADLPD-EARQVIEMR 298

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
           + A+ +A  K   L+  M++DGR RG LQ+ GA RT RW+G  F PQNL R     + L 
Sbjct: 299 LGAASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLA 358

Query: 341 QIITHLPTSITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           + I  L         D +++ +  VR C+I + GKKLVVAD + +E R LAW+AGE   L
Sbjct: 359 RGIEALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSAL 418

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
             F  G D+Y  T  + F ++P  V   +R IGK  EL LGY GG  AF   +   GL+L
Sbjct: 419 DTFRAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDL 478

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQ----ENHPEHAIEDLFIGTA--------CERVK 507
              A  +        W  A     +M+    +  P    +D              C+ +K
Sbjct: 479 EEMAVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIK 538

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAII---ARKRRDVP--------LVYMKKDKN 556
           + WR+ H R  + W +L +A    I+N  A     A+ R+D          L    K  N
Sbjct: 539 RMWRESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGN 598

Query: 557 NLILMLPSGRSLVYRDVG-------------NNRSYL-----NTTTRQLTREYTYGGKLT 598
            L + LPSGR L Y  +G               R  +     N  TRQ   ++TYGGKL 
Sbjct: 599 WLKIELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLA 658

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           EN+ QA+ RDILA  M+    AGY+I+L+VHDE++ ETPDT E+N + L  LM   P+WA
Sbjct: 659 ENVTQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWA 718

Query: 659 KGLPLKAEGYESKRYRK 675
           KG PLKAEG+E  RY+K
Sbjct: 719 KGFPLKAEGWEGYRYKK 735


>gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 579

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 326/583 (55%), Gaps = 27/583 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK   ++
Sbjct: 5   LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL  + +   ++S K
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
            +  EGK LI+  CK         R     H E W+ F +Y   D+   REI++ L    
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           ++  E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   +
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L+++
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354
           +++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D 
Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD- 361

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLY 409
           D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY
Sbjct: 362 DIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLY 421

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              YAR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     +
Sbjct: 422 KLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPH 481

Query: 470 SAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             P    +A ++ +   E    + + E +F+   C+ +K+ WR  H +    W ++  A 
Sbjct: 482 IPPGVKREATSWYQKSVEKDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAV 539

Query: 529 EQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +Q I++ G A   RK      + +++DK  L + LPSGRSL Y
Sbjct: 540 KQAIQSPGIAFKCRK------LSVRRDKGWLRICLPSGRSLCY 576


>gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
 gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
          Length = 763

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 252/761 (33%), Positives = 364/761 (47%), Gaps = 93/761 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           LF+D ET S +DL K G   YAE     +++  +  D+  V+ WDC   P MP+ L++AL
Sbjct: 7   LFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPRELRKAL 66

Query: 62  ENTD----VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
                     ++A+   F+R V++  + +D+P+ +   T+++A  + LP +L    + L 
Sbjct: 67  RRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDMQCQVLG 126

Query: 118 LSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + ++  K + GK LI RFCK         R  +  H E W  F  Y   D+   RE++ R
Sbjct: 127 VDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREVYWR 186

Query: 175 LEPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +    +  KE E+  +DQ INDRG+ VDV LA    + V   + +L +E      G ++ 
Sbjct: 187 IPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERFGGKLTG 246

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  L  L+    L     + +  ++T   +L  +     +   +   R+ AS +A  K N
Sbjct: 247 NDFLPALRD---LAPAFTIHNAQKSTLNDLLE-DPDFPDEGKVLIEMRLGASSTASTKYN 302

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS------------------- 333
            LV  +++DGR RG LQ+ GA RT RW+G  F PQNL R                     
Sbjct: 303 PLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESDVA 362

Query: 334 ---RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              RSH   + I + L  +     D  ++ +  VR C+I ++GKK VVAD + +E R LA
Sbjct: 363 FWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRGLA 422

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---KDQRAIGKVMELALGYQGGAKA 447
           W+AGE+  L  F+ G D+Y  T  + F + P  +    KD R IGK  EL LGY GG  A
Sbjct: 423 WIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYGGGVAA 482

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH----PEHAIED------- 496
           F + A   GL+L   A ++K       W  A+    + + N     P+   +D       
Sbjct: 483 FLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDERPTYIL 542

Query: 497 -LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-GKA----------------I 538
              +   C+ +K+ WR+ H +    W EL  A    I N GKA                I
Sbjct: 543 PKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGKKALKI 602

Query: 539 IARKRRDVPLVYMKKDKNN-----LILMLPSGRSLVY------------RDVGNNRSYL- 580
           +  K +  P    ++D  N     L + LPSGR + Y             D G  R+   
Sbjct: 603 VRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKKRTSTR 662

Query: 581 ------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                 N TTRQ   +YTYGGKLTENIVQA+ RDILA  M     AGY+IVL+VHDE++ 
Sbjct: 663 IKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVHDELIT 722

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E PDTD++    L  LM   P WAKG PL AEG    RYRK
Sbjct: 723 EVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763


>gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
 gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
          Length = 681

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 240/698 (34%), Positives = 358/698 (51%), Gaps = 71/698 (10%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLD 87
           +++ +  DD PV  WD      MP  L EA++  D     +   F+R VLK         
Sbjct: 1   MIWTWAIDDGPVGTWDVTTGAPMPVELDEAIDAADEYWWQNGGMFDRVVLKHAAPEIYAR 60

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGE-THECLYD 144
           +P H+W  T+V A ++GLP  L  + E   + +   K +EG +LI  FCK    +  L  
Sbjct: 61  MPEHKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRR 120

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQTINDRGYCVD 200
             +  H E W  F  Y   D+T  R + K +     P +  E  LW+ DQ IN RG  +D
Sbjct: 121 ATRETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMD 180

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
           V LA    + +D  + +L      LT G V+ +   +KL   L  E  + L D+ ++T +
Sbjct: 181 VELAEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLE 240

Query: 261 RVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           R +  N    P A+ ++   R+ A+ ++  K  TL+  +++DGRLRG +QF GA RTGR 
Sbjct: 241 RRI--NDPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRV 298

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP----------------------- 356
           +  +F P N+PRP     ++  ++  L  +  SD D                        
Sbjct: 299 AHRLFQPGNMPRP-----DVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENV 353

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVT 411
           + + ++ VR  ++A +GK+L V+DL+ IE R  AW+AGE+WKL+AF       G DLY  
Sbjct: 354 IGLTANVVRGTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKL 413

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT-----FAHLV 466
            YAR+F VA   V K  R +GKVMELAL Y+GG  AF     T  ++L++     FA L 
Sbjct: 414 AYARAFGVAVEAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALD 473

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELH 525
             +  PE   +A     W  +      + +D+FI  AC+ +K+ WR+ H + S  W EL 
Sbjct: 474 TVD--PEIVREARGMWEWAVKKRRTLGLPQDVFI--ACDILKRLWRRAHPQTSSYWPELR 529

Query: 526 QAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-----RDVGNNRSY 579
            A    I + GK + AR+      V +++D   L + LPS R L Y      D G   SY
Sbjct: 530 DAAILAISSPGKTVHARR------VILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEI-SY 582

Query: 580 L--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           +  N  TR+  R  TYGGK+ EN+ QAV+RD+L         AGYDIVL++HDE++ E P
Sbjct: 583 MGVNQYTRKWQRTKTYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAP 642

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           D D+++A  L  L+ + P+WA+G+PL A G+ + RY+K
Sbjct: 643 DADDYSADELSSLIATAPAWAEGMPLAAAGFSAYRYKK 680


>gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1]
          Length = 698

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 244/695 (35%), Positives = 344/695 (49%), Gaps = 57/695 (8%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALE-----NTDVTIVAHN-SYFERTVLKACFNLD 87
           A+ FDD PV++WDC +   MP  L  AL      N+ + +V HN S F+R ++K C+  D
Sbjct: 8   AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR 145
           IP+   I T++ A  + LP +L A+ E L +S+   K + GK LI RF K         R
Sbjct: 68  IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127

Query: 146 -NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVA 202
                H + W LF +Y   D+T  RE+F +L    + E E  +  LDQ INDRG+ VDVA
Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
           LA    + V+  + +L +E +    G ++    L  L+    L     + +  ++T   +
Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDL 244

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L+ +      A  +   R+ A+ +A  K N L+   +SD R RG +Q+ GA RT R++G 
Sbjct: 245 LADDDLPD-DASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGK 303

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDP-DPLQIISDCVRSCVIASEGKKLVVADL 381
            F PQNL R     +ELD+ I+ L         D  ++ +  VRSC+I   G K VVAD 
Sbjct: 304 GFQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADY 363

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---DQRAIGKVMELA 438
           + +E R LAW+AGE+  L  F  G D+Y  T  + F + P  + K   D R IGK  EL 
Sbjct: 364 SNVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELG 423

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFA---------HLVKTNSAPEEW---EDAENFCRWMQ 486
           LGY GG  AF + A   GL+L   A         H+    +   EW   ++A+   R  +
Sbjct: 424 LGYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGE 483

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRD 545
           ++     I D  +   C+ +K+ WR+ H      W ++  A    I N GK   A  R  
Sbjct: 484 KDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGV 543

Query: 546 VPLVYMKKDKNN-------LILMLPSGRSLVYRDVGNNRSYL------------------ 580
                ++ D N        L + LPSGR + Y  VG + S                    
Sbjct: 544 KFSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGE 603

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           N  TRQ   +YTY GKL EN  QA+ RD+LA  ++N    GY IVL VHDEI+CETPD  
Sbjct: 604 NQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLP 663

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+N + L  LM   P WA+G PL AEG E KRY K
Sbjct: 664 EYNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698


>gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3]
          Length = 502

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 210/512 (41%), Positives = 296/512 (57%), Gaps = 31/512 (6%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +    G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L++++++D
Sbjct: 63  HIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358
           GRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D D +Q
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N  P 
Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPG 300

Query: 474 EWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              +A    RW Q   E    + + E +F+   C+ +K+ WR  H +    W ++  A +
Sbjct: 301 VKREA---MRWYQKSVETDKTYGLSEKIFV--TCDALKRMWRNAHPQTVSFWYDIEDAVK 355

Query: 530 QTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLNTT-- 583
           Q I++ G A   RK      + +++DK  L + LPSGRSL Y   R      +Y+ T   
Sbjct: 356 QAIQSPGIAFKCRK------LSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPY 409

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +R+  R  TYGGK+ ENI Q+ +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+
Sbjct: 410 SRKWERLKTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFS 469

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           A  L  L++ N  WA  LPL A G+E+ RYRK
Sbjct: 470 AEGLSKLLSFNSDWAWDLPLSANGFETYRYRK 501


>gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 591

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 216/546 (39%), Positives = 304/546 (55%), Gaps = 24/546 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+   D PV +WD      +P  L++A+ +
Sbjct: 5   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            D  +  HNS+F+RTVL+ A   L   + RW  T+V A ++GLP AL A+ E L +   K
Sbjct: 64  PDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE+ KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPKWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            K  EL  W+ DQ INDRG C+DV LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 184 YKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K  +L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRMA-DPDLPSAVKELLAIRLQASTTSTSKYKSLMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRPS   +++D+ I  L          +
Sbjct: 303 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C++A EGKKLVV+DL+ IE R LAW+AGEQWKL AF      TG DLY 
Sbjct: 363 IMELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YAR+FN++P  V K QR IGKVMEL LG+ GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +A+N   W  E+    A     E +FI  AC+ +K+ WR+ H    + W EL +
Sbjct: 483 PRDVIREAKN---WYDESVKRKATYGLSERVFI--ACDSLKRLWRRAHPATCDFWYELER 537

Query: 527 AFEQTI 532
                I
Sbjct: 538 TVRAAI 543


>gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
          Length = 655

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 250/718 (34%), Positives = 352/718 (49%), Gaps = 107/718 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ID+   G  KY E  D  ++LFA+ F+D PV++ D      +PQ + 
Sbjct: 1   MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +AL + DV   A N+ FER+ +K    +L  P  +W CT++ A + GLPS+L  VG+ALK
Sbjct: 61  DALYDPDVIKTAFNANFERSAIKFGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKALK 120

Query: 118 L--SSQKMEEGKELIARFCKGETHECLYD---RNKPNH-REAWRLFGEYCKGDVTVTREI 171
           L    QKM+EGK LI  FCK        D   RN P H  E W  F EYCK DV V REI
Sbjct: 121 LEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVEREI 180

Query: 172 FKRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              L    +K  EQ+LW LDQ INDRG   D+ L   + Q ++ + T   + L      L
Sbjct: 181 RNLLNRYETKAEEQKLWQLDQHINDRGIDTDLIL---IKQAIECD-TNYTERLTKAAIKL 236

Query: 230 --VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRS 286
             + +     ++K W+    G  ++ LT+T+   ++   K L   + I++   R   +++
Sbjct: 237 TGLENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAKT 296

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSH------- 336
           ++ K +T+  A   DGR+RG LQF GA+RTGRW+G +   QNLP+   P   +       
Sbjct: 297 SIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVRE 356

Query: 337 ---EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              EE++ +   +P ++          S  +R+  I  EG + +V+D + IEARV+AW A
Sbjct: 357 GKFEEVEFLFDSVPDTL----------SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFA 406

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKM 451
           GEQW+L  F T   +Y  + ++ F V    + K  + R  GK+ ELALGY G   A   M
Sbjct: 407 GEQWRLDVFSTHGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSM 466

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                +                                PE  +  L          K+WR
Sbjct: 467 DRKKSI--------------------------------PEEELPGLV---------KSWR 485

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK---DKNNLILMLPSGRSL 568
             +  +++ W ++ +A ++ I        R+R  V L Y  K   D   L + LPSGR L
Sbjct: 486 NANPNITKFWWDVDKAAKKAI--------RERTTVNLQYGLKFIYDPGVLFIQLPSGRKL 537

Query: 569 VY---------RDVGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
            Y            G+  +Y  +  T++Q  R  TYG KL ENIVQA SRD L E M   
Sbjct: 538 SYIRPKIEPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRV 597

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            K GYDIV+ VHDE+V + P  D      +  LM     WA GLPLKA+GYE   Y K
Sbjct: 598 NKEGYDIVMHVHDEVVLDIP-KDRATVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654


>gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4]
          Length = 649

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 242/706 (34%), Positives = 356/706 (50%), Gaps = 89/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+  Y+E  D  ++LFA+  DD  VE+ D      +P  + 
Sbjct: 1   MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +A+ +  V   A+N+ FERT L   F + +P  +W CT V A   GLP  L  V + LKL
Sbjct: 61  KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKR 174
             QKM+EGK LI  F   CK         RN P H  A W  F +YCK DV V REI K+
Sbjct: 121 QGQKMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIRKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-ESLTYGLVS 231
           LE  PL + EQELW LDQ IND G  +D  L   +N  +  ++   D+ + E++    + 
Sbjct: 181 LEVFPLPTMEQELWELDQKINDEGVVIDTNL---VNHAIKADKAFQDELIEEAVRLTGLE 237

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +     +LK WL L+ GL ++ L +   + ++S  +   P+  ++   R   S+++V K 
Sbjct: 238 NPNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVE--NPEVKRLLELRRAMSKTSVKKY 294

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH------ 345
             +  ++ SD R+RG LQF GASRTGRW+G +    NLPR S    ++ + +        
Sbjct: 295 EAMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEA 354

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           L     S  D   ++S  +R+  I S+G + VVAD + IEARV+AW+AGE+W++  F++ 
Sbjct: 355 LEVLFESVSD---VLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSH 411

Query: 406 EDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
             +Y  + A+ F V    + K    R  GK+ ELALGY G   A  +M +   GL  +  
Sbjct: 412 GKIYEASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMGALEMGLTEDEL 471

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV                                          AWR+ + ++ +LW 
Sbjct: 472 PELV-----------------------------------------SAWREANPKIVKLWW 490

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---------RDV 573
            +  A  + ++  KA++ + +  +   Y    K  L + LPSGRSL Y         R  
Sbjct: 491 GIEAAAIKAVKE-KAVV-KMQHGLTFHYT---KGILFITLPSGRSLAYVRPKIGIDERFG 545

Query: 574 GNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
               +Y  T   ++Q  R  TYGGKLTENI+QA++RD LA  M+   +AGY I   VHDE
Sbjct: 546 KEQLTYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDE 605

Query: 632 IVCETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ + P       SM  + ++M  +  WA GLPL A+ +E+  Y+K
Sbjct: 606 VILDVPIA---TGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648


>gi|332800352|ref|YP_004461851.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
 gi|332698087|gb|AEE92544.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
          Length = 652

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 242/705 (34%), Positives = 350/705 (49%), Gaps = 84/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DLTKCG+  Y  AED  ++LF + F++ PVE+ D      +P  + 
Sbjct: 1   MTILSIDIETYSSVDLTKCGVYAYTQAEDFEILLFGYAFNNDPVEVIDLASGEQIPDEVT 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            A+ ++ V   A N+ FERT L    N  +P   W C+   A + GLP  L  V + L L
Sbjct: 61  NAITDSAVIKTAFNANFERTCLAKYLNKPMPPEEWRCSQAHALTLGLPLNLAGVAKCLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           + QKM EGK LI  F   CK         RN P+H RE W  F  YCK DV V R I KR
Sbjct: 121 ADQKMSEGKALIRYFSIPCKPTKANGGRTRNLPHHDREKWETFKAYCKQDVVVERSIRKR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P++ KE +LW LDQ IND G  VD  L         + + +L  E   LT GL  +
Sbjct: 181 LENYPMTDKELKLWSLDQKINDYGVRVDRQLVENAICCDGIHQKELMAEAIDLT-GL-EN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LKTWL     + ++ L++   + +L  NK   P   +V   R   S+++V K  
Sbjct: 239 PNSPAQLKTWLKGNHNIQVDSLSKANVEELL--NKINHPTVTRVLELRQDMSKTSVRKYE 296

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII------THL 346
            +  AM  DGR+RG LQ+ GA+RTGRW+G +   QNLPR +    +L + +        L
Sbjct: 297 AMDRAMGGDGRIRGLLQYYGANRTGRWAGRLVQVQNLPRNNMKDLDLARKLLLAGDYESL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  + S G + +++D + IEARV+AW+AGE+W +  F+   
Sbjct: 357 ELLFDSVPD---VLSQLIRTAFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHG 413

Query: 407 DLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
            +Y  T ++ F V    + K       R  GKV  LA GYQG   A + M +   LN+  
Sbjct: 414 KIYEMTASKMFGVPMELIVKGNPEYELRQKGKVAVLACGYQGSVGALKAMGA---LNMG- 469

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +K +  P                                 +  AWR+ +  + +LW
Sbjct: 470 ----LKEDELPA--------------------------------IVAAWRESNPNIVKLW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY------RDVGN 575
            ++  A  + +++  +I  +      L +  K    L + LPSGR+L Y       D   
Sbjct: 494 WDVEDAAIRAVKDRTSITMQ----YGLKFYYK-SGVLFIRLPSGRNLAYVKPRIELDTRF 548

Query: 576 NRSYLNTTTRQLTREY----TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           N+  L      L  ++    TYGGKLTENI+QA++RD LAE ++   KAGY I   VHDE
Sbjct: 549 NKDKLTYEGIMLGNKWARIDTYGGKLTENIIQAIARDCLAESLLRLDKAGYKIAFHVHDE 608

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +V + P    F +   +  +M+ + +WAKGLPL+AEG+E+  Y K
Sbjct: 609 VVLDVPQG--FGSLKEVEEIMSQDINWAKGLPLRAEGFETNYYMK 651


>gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26]
 gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55]
 gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34]
 gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79]
 gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291]
 gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58]
 gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291]
          Length = 652

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 246/719 (34%), Positives = 359/719 (49%), Gaps = 112/719 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G+ +Y +  +  ++LFA+ FD+  V++ D V+D  +P+ + 
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A N+ FERT +    N+++  + W CT++ A + GLP +L +V +ALK 
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 S--SQKMEEGKELIARFC---------KGETHECLYDRNKPNH-REAWRLFGEYCKGDVT 166
           +   QKM+EGK LI  FC         KG T      RN P H  E W  F EYCK DV 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRT------RNLPIHDMEKWNKFKEYCKQDVV 174

Query: 167 VTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V REI  +L    + E+E  LWYLDQ IND G  VD  L     +       KL +E   
Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +T GL ++     +LK WL  + G  +  LT+ +   +L          +++   R   S
Sbjct: 235 IT-GL-NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVD--DENVVRILELRKLMS 290

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELD--- 340
           ++++ K   +  A  +D R+RG LQF GA+RTGRW+G +   QNLP   ++H E+LD   
Sbjct: 291 KTSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHIEDLDLAR 347

Query: 341 --------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                    +I  L  S+   PD   ++S  +R+  I SEG + +V+D + IEARV+AW 
Sbjct: 348 NLLKEGDFDLIELLYDSV---PD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWF 401

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQK 450
           AGE+W+L  F +   +Y  + +  F V    + K    R  GK+ ELALGY G   A   
Sbjct: 402 AGEKWRLDVFNSHGKIYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTS 461

Query: 451 MAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           M +   GL+      LV T                                         
Sbjct: 462 MGAIKMGLDEEELQPLVTT----------------------------------------- 480

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           WR  +  +++ W ++ +A ++ I++    I + +  +  +Y   +   L + LPSGR L 
Sbjct: 481 WRNANPNITKFWWDVDKAAKKAIKD--RTIVKLQHGIKFIY---NPGVLFIELPSGRRLS 535

Query: 570 YRD---------VGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           Y            G+  +Y  +  T++Q  R  TYG KL ENIVQA +RD L E M N T
Sbjct: 536 YLRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVT 595

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            AGY IV+ VHDE+V    D D+   S+  +  +M    SWAKGLPLKA+GYE   Y+K
Sbjct: 596 DAGYSIVMHVHDELVI---DVDKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
 gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
          Length = 658

 Score =  346 bits (888), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 247/711 (34%), Positives = 347/711 (48%), Gaps = 98/711 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           TL ID ET S +D+   G  KY E  D  ++LFA+ F+D PV++ D  +   +P  +  A
Sbjct: 7   TLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVFYA 66

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL-- 118
           L + ++   A N+ FER  +K  +    P  +W CT+V A + GLPS+L  VG+ALK   
Sbjct: 67  LTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKFEE 126

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EGK LI  F   CK         RN P H  E W  F EYCK DV V REI   
Sbjct: 127 DKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIRNL 186

Query: 175 LEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL--V 230
           L    +K  EQ+LW LDQ INDRG   D+ L   + Q ++ + T   + L      L  +
Sbjct: 187 LNRYETKVEEQKLWQLDQHINDRGIGTDLIL---IKQAIECD-TNYTERLTKAAIELTGL 242

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAVL 289
            +     ++K W+    G  ++ LT+T+   ++     L   + I++   R   +++++ 
Sbjct: 243 ENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAKTSIK 302

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQI------ 342
           K +T+  A   DGR+RG LQF GA+RTGRW+G +   QNLP   ++H  +LD        
Sbjct: 303 KYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHLPDLDNARNFVRE 359

Query: 343 --ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +     S PD L   S  +R+  I  EG + +V+D + IEARV+AW AGEQW+L 
Sbjct: 360 GKFQEVEFLFDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLD 416

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            F T   +Y  + ++ F VA   + K  + R  GK+ ELALGY G   A   M     + 
Sbjct: 417 VFSTHGKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSI- 475

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                          PE  +  L          K+WR  +  ++
Sbjct: 476 -------------------------------PEEELPGLV---------KSWRNANPNIT 495

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK---DKNNLILMLPSGRSLVY----- 570
           + W ++ +A ++ I        R+R  V L Y  K   D   L + LPSGR L Y     
Sbjct: 496 KFWWDVDKAAKKVI--------RERTTVNLQYGLKFIYDPGVLFIQLPSGRKLSYIRPKI 547

Query: 571 ----RDVGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                  G+  +Y  +  T++Q  R  TYG KL ENIVQA SRD L E M    KAGYDI
Sbjct: 548 EPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDI 607

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V+ VHDE+V + P  D      +  LM     WA GLPLKA+GYE   Y+K
Sbjct: 608 VMHVHDEVVLDIP-KDRATVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657


>gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
 gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
          Length = 649

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 238/709 (33%), Positives = 354/709 (49%), Gaps = 95/709 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLT CG+  Y  A D  ++LF + +DD PVEL D      +P  + 
Sbjct: 1   MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            A+E+ +V   A N+ FER  L    N  +    W CT + A   GLP  L  VG ALKL
Sbjct: 61  NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK   GK+LI  F   CK         RN P+H  E W+ F +YC  DV V RE+ ++
Sbjct: 121 KVQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVRRK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE---RTKLDQELESLTYGL 229
           +E  P+  KE +LW LDQ IND G  VD+AL   +NQ V  +    ++L+ E ++LT   
Sbjct: 181 IERYPIPEKELKLWLLDQKINDTGVLVDMAL---VNQAVKCDTQYSSRLEVEAKTLTK-- 235

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           + +   + +LK WL  E GL +E L++   Q +L+       +  ++   R   ++S++ 
Sbjct: 236 LDNPNSVAQLKEWL-KEQGLEVESLSKQAVQNLLTDADG---EIERLLTLRQEMAKSSIA 291

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL--- 346
           K   +  ++  D R+RG  QF GA+RTGRW+G +F  QNLP+      E+ +++      
Sbjct: 292 KYAAVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRF 351

Query: 347 -PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
               +  +  P+ ++S+ +R+ +I  +G + +VAD + IEARVLAW+A E W L  F+  
Sbjct: 352 KELELLYESVPI-VLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGH 410

Query: 406 EDLYVTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNL 459
             +Y  T +R F V   ++ K     + RA GKV  LA GYQGG  A + M A   GL+ 
Sbjct: 411 GKIYEQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGADKMGLS- 469

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                    T  + + +AWR  + R+  
Sbjct: 470 ----------------------------------------DTELDDIVRAWRSANQRIVR 489

Query: 520 LWNELHQAFEQTIENGKAIIARKRRD---VPLVYMKKDKNNLILMLPSGRSLVY------ 570
            W ++ +A         A++A + R+   V ++  K +   L + LPSGR L Y      
Sbjct: 490 FWYDVEKA---------AVLAVREREPQRVGILRFKVENGILFITLPSGRRLAYIRPKIE 540

Query: 571 RDVGNNRSYLN----TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
           +D+  ++  L        +Q  R+ TYGG+L ENIVQ  +RD LAE M+     GY IV 
Sbjct: 541 KDLRFDKDGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVG 600

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            VHDEI+ E     + +   L  +M     WA GLPL+A+G+E+  Y+K
Sbjct: 601 HVHDEIITEM-RKGQGSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648


>gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 651

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 246/700 (35%), Positives = 338/700 (48%), Gaps = 83/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L   G+ +YA D    ++LFA+  D   V++ D      +P  + 
Sbjct: 9   MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +ALE+  V   A N+ FER  L A     +    W C++V A   G+P  L  V +AL L
Sbjct: 69  DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            ++KM EGK LI  F    K        +RN P H  + W  F  YCK DV V   I KR
Sbjct: 129 ETEKMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAITKR 188

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+ ++E + ++ DQ INDRG  +D  LA       +  R    + +  LT   V +
Sbjct: 189 LHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELTR--VDN 246

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +L  WL  + GL ++ L +      L     L     +V   R   ++S+V K  
Sbjct: 247 PASVTQLLAWLRSQ-GLQIDSLAKADVAAALEG--ALEGDVAEVLALRQEMAKSSVKKYE 303

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL--DQIITH----L 346
            ++     DGR  G LQF+GA RTGRW+G +   QNLPR S S  E   D + T     L
Sbjct: 304 RMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADML 363

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            T   S P   Q++S+ +R+  +A  G + +VAD + IEAR +AW+AGEQW L  FE G 
Sbjct: 364 ETLWGSAP---QVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGG 420

Query: 407 DLYVTTYARSF-NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTFAH 464
           D+Y  T  R F  V        QRA  KV  LA GYQGG  A + M     GL+ +  A 
Sbjct: 421 DIYCETGTRMFRQVVEKHSPLRQRA--KVAVLACGYQGGVGALKTMGGEKLGLSEDEMAD 478

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           +V                                          AWR  + ++++LW ++
Sbjct: 479 IV-----------------------------------------AAWRAANPKIAQLWWDI 497

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNT 582
           + A    I++G A      R V  + +  DK  LI+ LPSGR LVY    +G NR    +
Sbjct: 498 NAAAIAVIKDGGA------RAVGRIRLAHDKGALIITLPSGRPLVYPSPRIGENRFGGES 551

Query: 583 TT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            T       R+  R  TYGGKLTENIVQA +RDILA  +    ++GY +V+ +HDE+V E
Sbjct: 552 ITHMGVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTE 611

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P+    +   L  LM+  P WA GLPL AEG+ES  YRK
Sbjct: 612 VPE-GRGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650


>gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932]
 gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196]
 gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196]
          Length = 652

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 241/718 (33%), Positives = 360/718 (50%), Gaps = 110/718 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G+ +Y +  +  ++LFA+ FD+  V++ D V+D  +P+ + 
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A N+ FERT +    N+++  + W CT++ A + GLP +L +V +ALK 
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 S--SQKMEEGKELIARFC---------KGETHECLYDRNKPNH-REAWRLFGEYCKGDVT 166
           +   QKM+EGK LI  FC         KG T      RN P H  E W  F EYCK DV 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRT------RNLPIHDMEKWNKFKEYCKQDVV 174

Query: 167 VTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V REI  +L    + E+E  LWYLDQ IND G  VD  L     +       KL +E   
Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +T GL ++     +LK WL  + G  +  LT+ +   +L          +++   R   S
Sbjct: 235 IT-GL-NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVD--DENVVRILELRKLMS 290

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELD--- 340
           ++++ K   +  A  +D R+RG LQF GA+RTGRW+G +   QNLP   ++H E+LD   
Sbjct: 291 KTSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHIEDLDLAR 347

Query: 341 --------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                    +I  L  S+   PD   ++S  +R+  I SEG + +V+D + IEARV+AW+
Sbjct: 348 NLLKEGDFDLIELLYDSV---PD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWL 401

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQK 450
           AGE+W+L  F +   +Y  + ++ F +    + K  + R  GK+ EL+ GY G   A   
Sbjct: 402 AGEKWRLDVFNSHGKIYEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALIS 461

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           M +            +K     EE                             + +  AW
Sbjct: 462 MGA------------IKMGLKEEE----------------------------LQPIVTAW 481

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R  +  +++ W ++ +A ++ I++    I   +  +  +Y   +   L + LPS R L Y
Sbjct: 482 RNANPNITKFWWDVDKAAKKAIKD--RTIVEIQHGIKFIY---NPGVLFIELPSSRRLSY 536

Query: 571 RD---------VGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                       G+  +Y  +  T++Q  R  TYG KL ENIVQA +RD L E M N T 
Sbjct: 537 LRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTD 596

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           AGY IV+ VHDE+V    D D+   S+  +  +M    SWAKGLPLKA+GYE   Y+K
Sbjct: 597 AGYSIVMHVHDELVI---DVDKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
 gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
          Length = 650

 Score =  340 bits (872), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 242/709 (34%), Positives = 336/709 (47%), Gaps = 94/709 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DLTK G+  YAE  D  ++LF + FDD PV+L D      +P  + 
Sbjct: 1   MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + ++   A N+ FERT +   FN  +P  +W CT V A + GLP  L  V + L L
Sbjct: 61  NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK   GK LI  F   CK         RN P H  + W  F  YCK DV V R+I K 
Sbjct: 121 KQQKDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIRKT 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+   E +LW LDQ IND G  VD  L           + KL  +   LT GL  +
Sbjct: 181 LERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLT-GL-DN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            + + +LK WL    GL +E L + +   +L   +  T +  Q+   R   ++++V K  
Sbjct: 239 PKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTESSTVK--QMLELRQEMAKTSVKKYL 296

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS-------------RSHEEL 339
            +  A   DGR+RG LQF GA+RTGRW+G +   QNLPR S               +E L
Sbjct: 297 AMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIKDLDQARQLLKAGDYEML 356

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           + +   +PT          ++S  +R+  +  EG + +VAD + IEARV+AW+A E+W++
Sbjct: 357 ELLFESVPT----------VLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRM 406

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGL 457
             F T   +Y  + +  F+V   ++TK    R  GKV ELALGYQGG  A   M +    
Sbjct: 407 DVFRTHGKIYEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMGA---- 462

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                      ++E   E  +  L          K WRQ    +
Sbjct: 463 ---------------------------LKEGLTEEELPGLV---------KLWRQSSPNI 486

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVG 574
            + W +   A  + ++    +       +  +Y   +   L + LPSGR L Y   R   
Sbjct: 487 VKFWYDTEAAAIKAVKEKTTV--ELHHGIHFIY---ESGILFIRLPSGRRLAYIKPRIQN 541

Query: 575 NNR------SY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
           N R      +Y      T+Q  R YTYGGKL ENIVQAV+RD LAE ++    AGY  V+
Sbjct: 542 NPRLDKPALTYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVM 601

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            VHDE V E P     +      +M     WA GLP++A+G+ES  Y+K
Sbjct: 602 HVHDESVMEMPH-GVGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649


>gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255]
          Length = 652

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 241/718 (33%), Positives = 358/718 (49%), Gaps = 110/718 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G+ +Y +  +  ++LFA+ FD+  V++ D V+D  +P+ + 
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A N+ FERT +    N+++  + W CT++ A + GLP +L +V +ALK 
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 S--SQKMEEGKELIARFC---------KGETHECLYDRNKPNH-REAWRLFGEYCKGDVT 166
           +   QKM+EGK LI  FC         KG T      RN P H  E W  F EYCK DV 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRT------RNLPIHDMEKWNKFKEYCKQDVV 174

Query: 167 VTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V REI  +L    + E+E  LWYLDQ IND G  VD  L     +       KL +E   
Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +T GL ++     +LK WL  +    +  LT+ +   +L          ++    R   S
Sbjct: 235 IT-GL-NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVD--DENVVRTLELRKLMS 290

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELD--- 340
           ++++ K   +  A  +D R+RG LQF GA+RTGRW+G +   QNLP   ++H E+LD   
Sbjct: 291 KTSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHIEDLDLAR 347

Query: 341 --------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                    +I  L  S+   PD   ++S  +R+  I SEG + +V+D + IEARV+AW+
Sbjct: 348 NLLKEGDFDLIELLYDSV---PD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWL 401

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQK 450
           AGE+W+L  F +   +Y  + ++ F V    + K  + R  GK+ EL+ GY G   A   
Sbjct: 402 AGEKWRLDVFNSHGKIYEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALIS 461

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           M +            +K     EE                             + +  AW
Sbjct: 462 MGA------------IKMGLKEEE----------------------------LQPIVTAW 481

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R  +  +++ W ++ +A ++ I++    I   +  +  +Y   +   L + LPS R L Y
Sbjct: 482 RNANPNITKFWWDVDKAAKKAIKD--RTIVEIQHGIKFIY---NPGVLFIELPSSRRLSY 536

Query: 571 RD---------VGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                       G+  +Y  +  T++Q  R  TYG KL ENIVQA +RD L E M N T 
Sbjct: 537 LRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTD 596

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           AGY IV+ VHDE+V    D D+   S+  +  +M    SWAKGLPLKA+GYE   Y+K
Sbjct: 597 AGYSIVMHVHDELVI---DVDKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
 gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
          Length = 653

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 241/703 (34%), Positives = 344/703 (48%), Gaps = 79/703 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ID+ K G  KYA+  D  +++FA+ +D  PV++ D      +PQ + 
Sbjct: 1   MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A+N+ FE   L   F    PI +W CT V     G  + L AVGEAL +
Sbjct: 61  EALADPAVVKHAYNAAFEWYCLNRFFY--SPIEQWRCTQVHGLYCGYTAGLGAVGEALGI 118

Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               +K+  G  LI  FC   K      +  R  P+H  E W+LF EYC GDV    EI 
Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+  +E +LW+LDQ IN RG   D+ +      + +   ++L  E  SLT GL 
Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLT-GL- 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            + + +++L  WL  ETG  +E+L + T  +++  +K    +A +V   R   S+++  K
Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLI--DKLDEGKARRVLEIRQELSKTSTKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE------LDQIIT 344
              +  A  SD R+RG LQF GA+RTGRW+G +   QNLPR   S  E      +++ + 
Sbjct: 295 YAAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVE 354

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            L     + PD L   S  +R+  +   GK+L VAD + IEARV+AW+AGEQW+L  F T
Sbjct: 355 MLKFVYGNVPDTL---SQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFAT 411

Query: 405 GEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              +Y  + ++ F V   Q+ K  D R  GKV ELALGYQGG  A   M +         
Sbjct: 412 HGKIYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMGA--------- 462

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 +    E E  E   R                          WR  + R+ +LW 
Sbjct: 463 -----LDQGLTEAELPEIVTR--------------------------WRNANRRIVDLWY 491

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-------RDVGN 575
            +  A  + +E G+ +  R        +    ++   + LPSGR L Y        D G 
Sbjct: 492 SMEAAAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGK 551

Query: 576 NRSY---LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
              +   ++ T+++ T   TYGGKL EN VQA++RD LA  +M     GY IVL VHDE+
Sbjct: 552 PALHYWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEV 611

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             E    DE +   +  +M     WA GLPLK +G+ +  Y K
Sbjct: 612 GAELSSADELD--RMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652


>gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
          Length = 646

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 237/707 (33%), Positives = 355/707 (50%), Gaps = 98/707 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S +D+TK G+  Y  AED  ++LFA+ ++D  + + D      +PQ + E L
Sbjct: 2   LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +   A N+ FERT L    N  +P  +W C+ V A + G   +L+   ++L L  Q
Sbjct: 62  TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121

Query: 122 KMEEGKELIARF---CK-GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE 176
           KM+EGK LI  F   CK GE       RN P H  E W++F  YCK DV V R + K+LE
Sbjct: 122 KMKEGKALIRYFSMPCKRGER-----SRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLE 176

Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             P++ KE ELW LDQ IND G  +D  L H+  +     ++K  +E  +LT GL + + 
Sbjct: 177 KYPVTKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALT-GLENPNS 235

Query: 235 CLEKLKTWLFLET-GLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLKLN 292
            ++ LK W  LET G+  E L++   + +L   K++  + ++ V   R   S+++V K  
Sbjct: 236 QVQ-LKGW--LETKGVKAESLSKEKVRELL---KEVEDEKVKRVLKLRQELSKTSVKKYE 289

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH------L 346
            +  A+  D R+RG L+F GA+RTGRWSG +   QNLPR +  + E  +++        L
Sbjct: 290 AIKRAVCKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEML 349

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S P   +++S  +R+  I +   + +V+D + IEARV+AW+AGE+W +  F+   
Sbjct: 350 EVLFYSVP---EVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSG 406

Query: 407 DLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAST-TGLNLN 460
            +Y    +R F V   ++ K       R  GKV  LA GYQG   A   M +   GL   
Sbjct: 407 KVYEMAASRMFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVKMGLKEE 466

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             + +V                                          AWR+ +S + +L
Sbjct: 467 ELSGIV-----------------------------------------AAWRKSNSNIVKL 485

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY------RDVG 574
           W ++  A  + +   K +    +    L +   ++  L + LPSGRSL Y      +D  
Sbjct: 486 WRKIEDAAIKAVREKKVV----KMQYGLEFFGSEE-FLFIKLPSGRSLSYVRPRIEKDFR 540

Query: 575 NNRSYLN-----TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
            N+  L        T+   R  TYGGKLTENIVQA++RD LA  M+   +AGY IV  VH
Sbjct: 541 FNKLKLTYEGIEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVH 600

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNP-SWAKGLPLKAEGYESKRYRK 675
           DE++ + P+   F +    + +   P  WAKGLPLKA+G+E+  Y+K
Sbjct: 601 DEVILDVPNG--FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645


>gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 653

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 240/713 (33%), Positives = 352/713 (49%), Gaps = 104/713 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET S +D+   G  +YAE+  ++LFA+ +DD PV++ D   +  +P  +  AL +
Sbjct: 3   LSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALTD 62

Query: 64  TDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEALK 117
            D+   A N+ FERTVL    + +      +    W CT+V A + GLP +L  V + LK
Sbjct: 63  NDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTLK 122

Query: 118 LS--SQKMEEGKELIARFCK---------GETHECLYDRNKPNHR-EAWRLFGEYCKGDV 165
           L    +KM  G +LI  FCK         G T      RN PN   E W  F  YC  DV
Sbjct: 123 LGEEKEKMSVGTQLITYFCKPCKPTKSNGGRT------RNLPNDAPEKWATFKAYCVRDV 176

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              RE+ +RL   P+   E+ LW LDQ INDRG  +D  LA          R ++  E  
Sbjct: 177 EAEREVRRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEAS 236

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +L+ GL + +   E+LK W++ + G     LT+ T   ++ + K  T + +     +M  
Sbjct: 237 ALS-GLENPNSG-EQLKHWIYEQEGARPLSLTKETIPELIETAKSETVKTM--LQLKMLL 292

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           S+++V K   +V+A  SDGR  G LQF GA+RTGRW+G +   QNLPR + +  ELD   
Sbjct: 293 SKTSVKKYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMA--ELDDAR 350

Query: 344 THLPTSITSD-----PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
             L    T        +P  ++S  +R+  I + G +  VAD + IEARV+AW+AGE+W+
Sbjct: 351 ALLRCGDTDALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWR 410

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKM-AST 454
           +  F  G D+Y  + ++ F+V P +   V    R  GKV ELALGY GG  A ++M A  
Sbjct: 411 MDVFADGGDIYCASASKMFHV-PVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGADK 469

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            GL                   DAE                        E +K++WR+  
Sbjct: 470 LGLT------------------DAE-----------------------LEEIKQSWRKAS 488

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL---VYMKKDKNNLILMLPSGRSLVY- 570
            R+  LW++   A  + +        R+R  V L   + ++     L + LPSGRSL Y 
Sbjct: 489 PRIVRLWSDFESAALEAV--------RERSTVSLQHGIKLECRSGILFIRLPSGRSLAYV 540

Query: 571 -----RDVGNNRSYLNTTTRQL---TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
                 +   +R  L    R +    ++ TYGG+L EN +QA++RD LA  M     AGY
Sbjct: 541 KPRIEYEESFDREGLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGY 600

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV+ +HDE+V ETP + +  A +   +M+    WA GL L A+GY +  Y+K
Sbjct: 601 PIVMHIHDEVVVETPRSVDCLADVC-EIMSKPVDWAPGLVLTADGYTTNYYKK 652


>gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
 gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
          Length = 643

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 233/706 (33%), Positives = 351/706 (49%), Gaps = 95/706 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL K G+ KYAE  D  ++LFA+  +D  V++ D  +  ++P+ + 
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + +V   A N+ FER  L       +    W CT++ +   GLP +L+ VGE LKL
Sbjct: 61  SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM EGK LI  F   CK      +  RN  +H  E W  F EY + DV     I K+
Sbjct: 121 DKQKMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIKKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK-LDQELESLTYGLVS 231
           L   P+S  E E +++DQ INDRG  +D  L  +  +   + R + +D+ +E LT GL +
Sbjct: 181 LSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIE-LT-GLEN 238

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            +  L+ LK WL  + GL ++ L +   +  L + +    + +++   R   S+S+V K 
Sbjct: 239 PNSPLQ-LKEWLN-KKGLEIDSLAKKDVESALKNTEGDIKEVLEL---RQELSKSSVRKY 293

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           + +      D R RG +QF GA+RTGR+SG +   QNL R   + ++LD     L  S+ 
Sbjct: 294 DAMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRR--NNLKDLD-----LARSLV 346

Query: 352 SDPD----------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
            + D          P  I+S  +R+  IA EG + +++D + IEARVLAW+AGEQW L A
Sbjct: 347 KNRDYETMEILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDA 406

Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLN 458
           FE GED+Y  T +R F V   +  V    R  GK+  LA GYQG   A + M     GL+
Sbjct: 407 FENGEDIYCRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMGGIEMGLS 466

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +    +V +                                         WR+ +  + 
Sbjct: 467 EDELQSIVDS-----------------------------------------WREANPNIV 485

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
            LW ++    ++ ++       R +     + +  +K  L + LPS R L Y    +G N
Sbjct: 486 SLWWDIDSVVKRVVK------TRTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTN 539

Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R    +          +  +  +YGGK  ENIVQA++RDILAE MM   K G++IV+ +H
Sbjct: 540 RFGGESIVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIH 599

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE+V E   +D  +   +  +M+  PSWA GL L A+G+ES+ Y+K
Sbjct: 600 DEVVIE---SDSSSIEEINQIMSLVPSWAPGLILDADGFESEFYKK 642


>gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase
 gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2]
 gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2]
          Length = 648

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 344/706 (48%), Gaps = 90/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL K G+  Y E  D  ++LFA+ FDD PV++ D      +P  + 
Sbjct: 1   MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL ++ V   A+N+ FERT +   FNL +   +W CT V A + GLP  L  V +ALKL
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
           S+QK + GK LI  F   CK         RN P H  E W  F  YC  DV V R I  R
Sbjct: 121 SAQKDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIKNR 180

Query: 175 L---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +   EPL S E +LW LDQ INDRG  +DV L        +  +  L  E + LT GL +
Sbjct: 181 ISKFEPLES-EHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLT-GLPN 238

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            +   + LK WL  E GL +  L +   + ++ +    T    +V   R   ++++V K 
Sbjct: 239 PNSTAQ-LKKWL-EEKGLTISSLAKDKIEELIENTNDETVH--RVLRLRQEMAKTSVKKY 294

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             + +A+  D R+RG LQF GASRTGRW+G +   QNLP+     E+LD     L     
Sbjct: 295 LAMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQ--NKIEDLDTARNLLKGGHY 352

Query: 352 SDPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
              + L      ++S  VR+  I SEG +  V+D + IEARV+AW+AGE+W+L+ F T  
Sbjct: 353 EAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHG 412

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + A+ F V    +TK    R  GKV ELALGYQGG  A  +M +   GL      
Sbjct: 413 KIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALNMGLAEGELP 472

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV                                         KAWR  + ++ + W +
Sbjct: 473 ELV-----------------------------------------KAWRTANKKIVKFWYD 491

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------DVGNNR 577
           +  A  + ++  K +  + +  +  +Y   +   L + LPSGR L Y       D    +
Sbjct: 492 VEAAAIKAVKERKPV--KLQHGLTFLY---ESGILFVQLPSGRRLAYAKPKLELDERFGK 546

Query: 578 SYLNTTTR----QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
             L    +    +  R  TYGGKL ENIVQA +RD LA  +M    AGY  V+ VHDE V
Sbjct: 547 EALTYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAV 606

Query: 634 CETP----DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + P    + D+  A     +M    SWAKGLPL A+G+ +  Y+K
Sbjct: 607 LDVPRGKNELDKVEA-----IMGEPISWAKGLPLTADGFVTDYYKK 647


>gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           LL3]
          Length = 648

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 244/705 (34%), Positives = 343/705 (48%), Gaps = 88/705 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+  Y E  D  ++LFA+ FD+ P+++ D      +P  + 
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL ++ V   A+N+ FERT +   FN  +P  +W CT V A + GLP  L  V +ALKL
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
           S QK +EGK LI  F   CK         RN P H  + W  F  YC  DV V R I  R
Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIKNR 180

Query: 175 LEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +    L   EQELW LDQ INDRG  +D  L        +  +  L  E + LT GL + 
Sbjct: 181 ISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELT-GLPNP 239

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +   + LKTWL  + GL +  L +   + ++      +    +V   R   ++++V K  
Sbjct: 240 NSTAQ-LKTWL-EDKGLSVSSLAKDKIEELIEKTDDASVH--RVLRLRQEMAKTSVKKYL 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + +A+  D R+RG LQF GASRTGRW+G +   QNLP+   +  +LD   T L      
Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIA--DLDTARTLLKGGHYE 353

Query: 353 DPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             + L      ++S  VR+  I SEG +  V+D + IEARV+AW+AGE W+L  F T   
Sbjct: 354 AIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGK 413

Query: 408 LYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + A+ F V    +TK    R  GKV ELALGYQGG  A  +M + T GL+ +    
Sbjct: 414 IYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELPG 473

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           LV                                         KAWR  + ++ + W ++
Sbjct: 474 LV-----------------------------------------KAWRTANKKIVQFWYDV 492

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------DVGNNRS 578
             A  + ++  K +  +      L ++  +   L + LPSGR L Y       D    + 
Sbjct: 493 EAAAVKAVKERKPVKIQH----GLTFL-CESGILFVQLPSGRRLAYAKPKLEIDDRFGKE 547

Query: 579 YLNTTTR----QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
            L    +    +  R  TYGGKL ENIVQAV+RD LA  ++    AGY  V+ VHDE V 
Sbjct: 548 ALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVL 607

Query: 635 ETP----DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + P    + D+  A     +M     WAKGLPL A+G+ +  Y+K
Sbjct: 608 DVPRGKNELDKVEA-----IMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
          Length = 648

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 244/703 (34%), Positives = 345/703 (49%), Gaps = 84/703 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+  Y E  D  ++LFA+ FD+ P+++ D      +P  + 
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL ++ V   A+N+ FERT +   FN  +P  +W CT V A + GLP  L  V +ALKL
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
           S QK +EGK LI  F   CK         RN P H  + W  F  YC  DV V R I  R
Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIKNR 180

Query: 175 L---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +   EPL + EQELW LDQ INDRG  +D  L        +  +  L  E + LT GL +
Sbjct: 181 ISKFEPLKA-EQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELT-GLPN 238

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            +   + LK WL  + GL +  L +   + ++      +    +V   R   ++++V K 
Sbjct: 239 PNSTAQ-LKKWL-EDKGLSVSSLAKDKIEELIEKTDDASVH--RVLRLRQEMAKTSVKKY 294

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             + +A+  D R+RG LQF GASRTGRW+G +   QNLP+   +  +LD   T L     
Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIA--DLDTARTLLKGGHY 352

Query: 352 SDPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
              + L      ++S  VR+  I SEG +  V+D + IEARV+AW+AGE W+L  F T  
Sbjct: 353 EAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHG 412

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + A+ F V    +TK    R  GKV ELALGYQGG  A  +M + T GL+ +   
Sbjct: 413 KIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELP 472

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV                                         KAWR  + ++ + W +
Sbjct: 473 GLV-----------------------------------------KAWRTANKKIVQFWYD 491

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------DVGNNR 577
           +  A  + ++  K +  +      L ++  +   L + LPSGR L Y       D    +
Sbjct: 492 VEAAAVKAVKERKPVKIQH----GLTFL-CESGILFVQLPSGRRLAYAKPKLEIDDRFGK 546

Query: 578 SYLNTTTR----QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
             L    +    +  R  TYGGKL ENIVQAV+RD LA  ++    AGY  V+ VHDE V
Sbjct: 547 EALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETV 606

Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + P   +E +   +  +M     WAKGLPL A+G+ +  Y+K
Sbjct: 607 LDVPRGKNELDK--VESIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 652

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 228/697 (32%), Positives = 341/697 (48%), Gaps = 75/697 (10%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S +DL KCG+ +Y E  D  ++LFA+ +DD P+ + D      +P+ + + L
Sbjct: 5   LSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTKDL 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + DV   A+N+ FERT +   +N  +P  +W CT V A + GLP  L  V + L L +Q
Sbjct: 65  TDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLDAQ 124

Query: 122 KMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE- 176
           K   GK LI  F   CK         RN P+H  + W+ F +YCK DV V R I K++E 
Sbjct: 125 KDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRKKIEK 184

Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            P+   E +LW LDQ IND G  +D  L     +      T+LD E + LT GL  +   
Sbjct: 185 YPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELT-GL-DNPNS 242

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
             +L  WL  + GL +++         L    K      ++   R   S+++  K   + 
Sbjct: 243 TTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTKKYEAME 301

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL----PTSIT 351
            AM SD R RG LQF GA+RT RW+G +   QNLP+       + + + H        + 
Sbjct: 302 RAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEAIELL 361

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            +  P  ++S  +R+  I S+G + +V+D + IEARV+AW+AGE W++K F++   +Y  
Sbjct: 362 FNSPPF-VLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKIYEA 420

Query: 412 TYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKT 468
           + +  F+V   ++TK    R  GK+ ELALGY G   A + M +   GL+ +    LV  
Sbjct: 421 SASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLDADELPDLV-- 478

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                   AWR  + ++ +LW ++ +A 
Sbjct: 479 ---------------------------------------TAWRNSNPKIVKLWWDVDKAA 499

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-----RDVGNNRSYL--- 580
              +     +    R    + +  KD   L + LPSGR L Y     +D    R  L   
Sbjct: 500 MTAVREHMPV----RIQYGITFSYKD-GFLFIKLPSGRKLAYVKPKIKDGKFGRPALTYE 554

Query: 581 --NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
             +   +   R  TYG KL ENIVQAV+RD LA  M+    AGYDI + VHDE++ + P+
Sbjct: 555 GMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDVPN 614

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           TD    + +  +M+    WA GLPL+A+GYE++ Y+K
Sbjct: 615 TDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651


>gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes
           L99]
          Length = 644

 Score =  329 bits (844), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 225/702 (32%), Positives = 337/702 (48%), Gaps = 92/702 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
            L ID ET S  D+  CG   Y  +ED  ++LFA+ +DD PV++ D   D + P  + E 
Sbjct: 5   VLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLTIDEI-PDTVLED 63

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L N  V   AHN+ FERT L   +N  +P  +W CT+V     GLP++L  + +AL+L+ 
Sbjct: 64  LNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLAQ 123

Query: 121 QKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLE 176
           +K  EGK LI  FC   K         RN P H  E W  F EYC+ DV V R I K++ 
Sbjct: 124 EKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAKKIA 183

Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             P    EQ  W LDQ I D+G  +DV L        +  +  L ++ + LT GL  +  
Sbjct: 184 KFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLT-GL-ENPN 241

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
            +++LK WL  + G  +  L + +   +L+ ++ L     ++   R   S++++ K   +
Sbjct: 242 SVQQLKDWL-ADMGYPVSSLNKDSVSELLA-DEDLDEDVREMLLLRQEMSKTSIKKYEKM 299

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSHEELDQ 341
             A   DGR+RG LQF GA+RTGRW+G +   QNLPR              +  +E  + 
Sbjct: 300 QHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFEM 359

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           + +++P           ++S  +R+  IA +G    + D + IEARV+AW+AGEQW+L  
Sbjct: 360 MYSNVP----------DVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDV 409

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLN 460
           F +   +Y  + ++ F++   +V K+ R  GKV ELALGY GG  A   M +   GL  N
Sbjct: 410 FNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMGALEMGLKEN 469

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               +V                                          AWR+    ++ L
Sbjct: 470 ELQGIV-----------------------------------------DAWRKASPAITSL 488

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-------RDV 573
           W  + +  +  I   K   ++K + +   Y   +   L + LPSGR+L Y          
Sbjct: 489 WRGVEKHAKLAISTRK---SQKYKGLTFYY---EAGILFIKLPSGRNLAYFRAKLVPGKY 542

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G    Y   T +   ++YTYGGKL ENIVQA++RD LA  +      G D V+ VHDE +
Sbjct: 543 GPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAI 602

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E  ++ E +   L  ++    SWA GLPL+ +G+ S  Y K
Sbjct: 603 TEVQES-ESSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643


>gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
          Length = 653

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 244/711 (34%), Positives = 346/711 (48%), Gaps = 95/711 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D     + P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISEI-PDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
            AL + +V  +A N+ FER  L    +L +P +    +W CT+V A   GLP++L    +
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSK--HLGVPYYLDPAQWHCTMVHANELGLPASLGQCAK 117

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   
Sbjct: 118 YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTY 227
           I  +L   P+   E +L+ LDQ INDRG  +D  LA   ++ + D+    L+ E+++LT 
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLN-EMKALT- 235

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+
Sbjct: 236 GL-ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGN-LPENVAEVLKLRLSLSNSS 292

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340
             K   +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  E+D       
Sbjct: 293 TKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVK 350

Query: 341 -QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            + +  +     + PD L+     +R+ ++A EG + +V+D + IEARV+AW A + W L
Sbjct: 351 AKDVEGIELMYENVPDTLK---QLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVL 407

Query: 400 KAFETGEDLYVTTYARSFNVA-------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
             F T   +Y  T A+ F++         +   KD R  GKV  LALGYQGG  A + M 
Sbjct: 408 DVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG 467

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +                               ++    EH ++D+            WR 
Sbjct: 468 A-------------------------------LENGIEEHELQDIV---------DRWRT 487

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571
            + R+   W+E  +A    ++NG      K+    L + KK    L + LPSGR L Y  
Sbjct: 488 ANKRIKNFWHETQKAVIDCLQNG----GIKKGPRGLKFYKK-AGFLFIQLPSGRKLAYAK 542

Query: 572 ------DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                 D G    Y     +   T + TYGGKL ENIVQA +RD+LAE M+   KAGY I
Sbjct: 543 AHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPI 602

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V  VHDE V E P+ ++ +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 603 VFHVHDEAVAEVPEGEK-SIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652


>gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
          Length = 653

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 244/711 (34%), Positives = 344/711 (48%), Gaps = 95/711 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D     + P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISEI-PDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
            AL + +V  +A N+ FER  L     L +P +    +W CT+V A   GLP++L    +
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKY--LGVPYYLDPAQWHCTMVHANELGLPASLGQCAK 117

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   
Sbjct: 118 YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTY 227
           I  +L   P+   E +L+ LDQ INDRG  +D  LA   ++ + D+    L+ E++ LT 
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLN-EMKELT- 235

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+
Sbjct: 236 GL-ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGN-LPENVAEVLKLRLSLSNSS 292

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340
             K   +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  E+D       
Sbjct: 293 TKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVK 350

Query: 341 -QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            + +  +       PD L+     +R+ ++A EG + +V+D + IEARV+AW A + W L
Sbjct: 351 AKDVEGIELMYEDVPDTLK---QLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVL 407

Query: 400 KAFETGEDLYVTTYARSFNVA-------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + F T   +Y  T A+ F++         +   KD R  GKV  LALGYQGG  A + M 
Sbjct: 408 EVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG 467

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +                               ++    EH ++D+            WR 
Sbjct: 468 A-------------------------------LENGIEEHELQDIV---------DRWRT 487

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571
            + R+   W+E  +A    ++NG      K+    L + KK    L + LPSGR L Y  
Sbjct: 488 ANKRIKNFWHETQKAVIDCLQNG----GIKKGPRGLKFYKK-AGFLFIQLPSGRKLAYAK 542

Query: 572 ------DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                 D G    Y     +   T + TYGGKL ENIVQA +RD+LAE M+   KAGY I
Sbjct: 543 AHLEQGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPI 602

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V  VHDE V E P+ ++ +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 603 VFHVHDEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
 gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
          Length = 640

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 240/703 (34%), Positives = 348/703 (49%), Gaps = 92/703 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLP++L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H    W++F  YC  DV V   I 
Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT    
Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +SR   +L  WL  E G     LT+   ++ L   KK   +  +V   +++ + S++ K
Sbjct: 239 PNSRA--QLLPWL-KEHGYSANGLTKADVEQEL---KKAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R     ++LD    ++    
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349

Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             D D ++I+ D         VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F
Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVF 407

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            T   +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M +   LN+   
Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                 ++E   +  ++D             WR+ + ++ + W 
Sbjct: 463 ----------------------VKEEELQGVVDD-------------WRRANKKIVQFWK 487

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575
           ++ +A  + I++   I   K R       +  K  L + LPSGR+L Y        D G+
Sbjct: 488 DVQRAAIKAIKSRAPIKLGKIR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541

Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              Y     R   T + TYGGKL ENIVQA +RDILAE ++    AGYD+V  VHDE + 
Sbjct: 542 KIIYEGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAII 601

Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E      +E N      LM+  P WA+GLPL +EGY +K Y K
Sbjct: 602 EGSGLIIEEVN-----DLMSQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 655

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 227/707 (32%), Positives = 339/707 (47%), Gaps = 93/707 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
           + L ID ET S +DL + G+  YAE     ++L A+ FDD  V + D V D  +P  + +
Sbjct: 8   SVLSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLK 67

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           AL +  +   A+N+ FERT L A  N  +P  +W C+ V A + GLP  L  V   L L 
Sbjct: 68  ALIDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLG 127

Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRL 175
            QK   GK LI  F   CK         RN P H  E W  +  YC+ DV V R + KRL
Sbjct: 128 DQKDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRL 187

Query: 176 --EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              P+  KEQ LW LDQ +ND G  +D  L     Q+   E+  L +E + +T GL  + 
Sbjct: 188 ASNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQIT-GL-ENP 245

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             + +L+ WL    G+    L +     +L ++  L     +V   R   S+++V K   
Sbjct: 246 NSVAQLRDWL-TSRGIETSGLAKKQVSDLLQTD--LPGDVRRVLILRQMMSKTSVKKYEA 302

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD-----------QI 342
           +  ++  DG +RG LQF GA+RTGRW+G +    NLP+      +LD           ++
Sbjct: 303 MDRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPK--HRIGDLDEARQLVKTGNYEL 360

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
           IT L  S+        ++S   R+  I  +G + VV+D + IEARV+AW+AGE+W++K F
Sbjct: 361 ITTLYGSLAD------LLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVF 414

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNL 459
           E    +Y  + ++ F V   ++TK    R  GK+ ELALGY G   A  +M +   GL+ 
Sbjct: 415 EGHGKIYEASASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMGALEMGLSE 474

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +    LV                                         KAWR+ +  +  
Sbjct: 475 DELPALV-----------------------------------------KAWRKANPNIVN 493

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
           LW +L ++  + ++  K + A+       +        L   LPSGRSL Y    +G + 
Sbjct: 494 LWYDLEKSAFEAVKWQKVVTAKSG-----IQFYGGSGLLRARLPSGRSLSYVRPQIGIDE 548

Query: 578 SY---------LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
            +         +   ++Q  R  TYGGK+ EN+VQA++RD LAE M+    AGY I   V
Sbjct: 549 RFGREEITYEGVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHV 608

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDE+V E P+  +  A  +  +M+    WA GLP+ A+ +E+  Y+K
Sbjct: 609 HDEVVIEVPNEQDAKAD-IERIMSEPIDWAPGLPMNADSFETGYYKK 654


>gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
 gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
          Length = 640

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 240/703 (34%), Positives = 347/703 (49%), Gaps = 92/703 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLP++L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H    W++F  YC  DV V   I 
Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT    
Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +SR   +L  WL  E G     LT+   ++ L   KK   +  +V   +++ + S++ K
Sbjct: 239 PNSRA--QLLPWL-KEHGYSANGLTKADVEQEL---KKAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R     ++LD    ++    
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349

Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             D D ++I+ D         VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F
Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVF 407

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            T   +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M +   LN+   
Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                 ++E   +  ++D             WR+ + ++ + W 
Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575
           ++ +A  + I++   I   K R       +  K  L + LPSGR+L Y        D G+
Sbjct: 488 DVQRAAIKAIKSRAPIKLGKIR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541

Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              Y     R   T + TYGGKL ENIVQA +RDILAE ++    AGYD+V  VHDE + 
Sbjct: 542 KIIYEGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAII 601

Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E      +E N      LM   P WA+GLPL +EGY +K Y K
Sbjct: 602 EGSGLIIEEVN-----DLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 643

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 229/706 (32%), Positives = 347/706 (49%), Gaps = 95/706 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S +DL K G+ KYAE  D  ++LFA+  DD  V++ D     ++P+ + 
Sbjct: 1   MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT++ +   GLP +L+ VGE LKL
Sbjct: 61  SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKR 174
             QKM EGK LI  F   CK      +  RN P+H    W +F EY + DV    EI K+
Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIKKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK-LDQELESLTYGLVS 231
           L   P+   E E +++DQ INDRG  +D  L  +  +  ++ R + +D+ +E LT GL +
Sbjct: 181 LSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIE-LT-GLEN 238

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            +  L+ LK WL  + GL ++ L +   +   S+ K       +V   R   S+S+V K 
Sbjct: 239 PNSPLQ-LKEWLN-KKGLEIDSLAKKDVE---SAIKNAEGDIKEVLELRQELSKSSVRKY 293

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           + +      + R RG +QF GA+RTGR+SG +   QNL R   + ++LD     L  S+ 
Sbjct: 294 DAMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRR--NNLKDLD-----LARSLV 346

Query: 352 SDPD----------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
            + D          P  I+S  +R+  I  EG + +++D + IEARVLAW+A EQW L A
Sbjct: 347 KNRDYETMEFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDA 406

Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLN 458
           FE GED+Y  T +R F V   +  +    R  GK+  LA GYQG   A + M     GL+
Sbjct: 407 FENGEDIYCRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMGGIEMGLS 466

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +    +V +                                         WR+ +  + 
Sbjct: 467 EDELQSIVDS-----------------------------------------WREANPNIV 485

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
            LW ++    ++ ++       R + +   + +  +K  L + LPS R L Y    +G N
Sbjct: 486 SLWWDIDSVVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMN 539

Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R    +          +  +  +YGGK  ENIVQA++RDILAE MM   K G++IV+ +H
Sbjct: 540 RFGGESVVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIH 599

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE+V E   +D  +   +  +M+  P WA GL L A+G+ES+ Y+K
Sbjct: 600 DEVVIE---SDSSSIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642


>gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 655

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 244/712 (34%), Positives = 336/712 (47%), Gaps = 95/712 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TLF D ET SP+ L K G+  Y E  D  ++LF++  D  PVE+ D  +   MP  + 
Sbjct: 1   MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109
            AL + DV   AHN+ FER  L A  +           +   +W CT+V +   GLP +L
Sbjct: 61  AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNHRE-AWRLFGEYCKGDV 165
            A+   LKL  QK   G++LI +FC   T   L     RN P+     W  F +Y + DV
Sbjct: 121 DAIAAVLKLDVQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRRDV 180

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V + I  RL   P+   E + + LDQ IND G  +D  L      + +  R       +
Sbjct: 181 EVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT GL + +  ++ LK WL    G  LE L +      L +    T    +V   R   
Sbjct: 241 KLT-GLDNPNSPIQ-LKQWLATR-GCELESLAKAEVDSALDTA---TGAVKEVLELRGDL 294

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +     SDGR RG +QF GA RTGR++G +   QNLPR      +LDQ  
Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPR--NYLPDLDQAR 352

Query: 344 THLPTS--------ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           T + T           S PD L   S  +R+  I S G + +VAD + IEARV+AW+AGE
Sbjct: 353 TLVRTGNLDALELLYESVPDTL---SQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGE 409

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMA 452
              L+AF  G+DLY  T +R F V P +   V  + R  GK+  LA GY G   A + M 
Sbjct: 410 TSTLEAFREGKDLYCETASRMFGV-PVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG 468

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +   LN+    H +K                                      +  AWRQ
Sbjct: 469 A---LNMGLAEHELKP-------------------------------------IVDAWRQ 488

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            +  +  LW ++ +A    I + + I  R  R         +     + LPSGR L Y  
Sbjct: 489 ANPHIVGLWADVEEAAIAAISSRQPIRLRNLR------FSVESGIFFIELPSGRRLAYVQ 542

Query: 573 --VGNNR-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
             +G NR           TT R+  +  TYGGKL ENIVQA++RD+L  GM    KAG+ 
Sbjct: 543 PRLGENRWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQ 602

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           IV+ VHDEIV + P+   F  +    LM++ P+WA+GLPL A+GYE   YRK
Sbjct: 603 IVMHVHDEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
          Length = 653

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 243/711 (34%), Positives = 343/711 (48%), Gaps = 95/711 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D     + P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISEI-PDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
            AL + +V  +A N+ FER  L     L IP +    +W CT+V A   GLP++L    +
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKY--LGIPYYLDPAQWHCTMVHANELGLPASLGQCAK 117

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   
Sbjct: 118 YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTY 227
           I  +L   P+   E +L+ LDQ INDRG  +D  LA   ++ + D+    L+ E+++LT 
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLN-EMKALT- 235

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+
Sbjct: 236 GL-ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGN-LPENVAEVLKLRLSLSNSS 292

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340
             K   +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  E+D       
Sbjct: 293 TKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVK 350

Query: 341 -QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            + +  +       PD L+     +R+ ++A EG + +V+D + IEARV+AW A + W L
Sbjct: 351 AKDVEGIELMYEDVPDTLK---QLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVL 407

Query: 400 KAFETGEDLYVTTYARSFNVA-------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + F T   +Y  T A+ F++         +   KD R  GKV  LALGYQGG  A + M 
Sbjct: 408 EVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG 467

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +                               ++    EH ++D+            WR 
Sbjct: 468 A-------------------------------LENGIEEHELQDIV---------DRWRT 487

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571
            + R+   W+E  +A    ++NG      K+    L + KK    L + LPSGR L Y  
Sbjct: 488 ANKRIKNFWHETQKAVIDCLQNG----GIKKGPRGLKFYKK-AGFLFIQLPSGRKLAYAK 542

Query: 572 ------DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                 D G    Y     +   T + TYGGKL ENIVQA +RD+LAE M    + GY I
Sbjct: 543 AHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPI 602

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V  VHDE V E P+ ++ +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 603 VFHVHDEAVAEVPEGEK-SIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK72]
          Length = 643

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 230/701 (32%), Positives = 336/701 (47%), Gaps = 85/701 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLTKCG+ +Y + +   ++LFA+  D++  ++ D V    +P+ + 
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT VLA S GLP +L+ VG  L +
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EG  LI  F   CK      + +RN P+H  E W LF  YCK DV V + I  R
Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTYGL 229
           L   PL   EQ  + LDQ INDRG  VD  L   A   +     + TK   EL  L    
Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSGL---- 236

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +   + +LK WL  E G+ ++ L +    + L   K+   + +++   R+  S+++V 
Sbjct: 237 -ENPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHL---KEADGEVLEMLKLRLLMSKTSVK 291

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HL 346
           K   +   + SDGR+ G LQF GA+RTGRW+G +   QNLP+       L + +      
Sbjct: 292 KYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQF 351

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            T  T   +   ++S+ +R+  +   G + +VAD A IEARVLAW++GE W+L+ FE G 
Sbjct: 352 ETLDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGG 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463
           D+Y  + +  F V   +       R  GK+ ELALGY G   A   M +   GL      
Sbjct: 412 DIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEELQ 471

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV                                           WR  +  +   W E
Sbjct: 472 PLVNQ-----------------------------------------WRSANPHIVAFWWE 490

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577
           + +  +Q  E       R+ + +  + +      L + LPSGR L Y    +G N     
Sbjct: 491 IDKVAKQVYET------REPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKP 544

Query: 578 --SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             +Y     +++ TR  TYG KL ENIVQ ++RD+LA GM+   + G  IVL VHDE V 
Sbjct: 545 GLTYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVV 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E     E + + +  L+ + P WA+GLPL+A+GY  + Y+K
Sbjct: 605 E---VREESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK1057]
          Length = 643

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 230/701 (32%), Positives = 337/701 (48%), Gaps = 85/701 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLTKCG+ +Y + +   ++LFA+  D++  ++ D V    +P+ + 
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT VLA S GLP +L+ VG  L +
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EG  LI  F   CK      + +RN P+H  E W LF  YCK DV V + I  R
Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTYGL 229
           L   PL   EQ  + LDQ INDRG  VD  L   A   +     + TK   EL  L    
Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSGL---- 236

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +   + +LK WL  E G+ ++ L +    + L   K+   + +++   R+  S+++V 
Sbjct: 237 -ENPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHL---KEADGEVLEMLKLRLLMSKTSVK 291

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HL 346
           K   +   + SDGR+ G LQF GA+RTGRW+G +   QNLP+       L + +     +
Sbjct: 292 KYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQV 351

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            T  T   +   ++S+ +R+  +   G + +VAD A IEARVLAW++GE W+L+ FE G 
Sbjct: 352 ETLDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGG 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463
           D+Y  + +  F V   +       R  GK+ ELALGY G   A   M +   GL      
Sbjct: 412 DIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEELQ 471

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV                                           WR  +  +   W E
Sbjct: 472 PLVNQ-----------------------------------------WRSANPHIVAFWWE 490

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577
           + +  +Q  E       R+ + +  + +      L + LPSGR L Y    +G N     
Sbjct: 491 IDKVAKQVYET------REPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKP 544

Query: 578 --SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             +Y     +++ TR  TYG KL ENIVQ ++RD+LA GM+   + G  IVL VHDE V 
Sbjct: 545 GLTYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVV 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E     E + + +  L+ + P WA+GLPL+A+GY  + Y+K
Sbjct: 605 E---VREESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A]
 gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A]
          Length = 653

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 242/711 (34%), Positives = 342/711 (48%), Gaps = 95/711 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D     + P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISEI-PDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
            AL + +V  +A N+ FER  L     L +P +    +W CT+V A   GLP++L    +
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKY--LGVPYYLDPAQWHCTMVHANELGLPASLGQCAK 117

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   
Sbjct: 118 YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTY 227
           I  +L   P+   E +L+ LDQ INDRG  +D  LA   ++ + D+    L+ E++ LT 
Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLN-EMKELT- 235

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+
Sbjct: 236 GL-ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGN-LPENVAEVLKLRLSLSNSS 292

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340
             K   +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  E+D       
Sbjct: 293 TKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVK 350

Query: 341 -QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            + +  +       PD L+     +R+ ++A EG + +V+D + IEARV+AW A + W L
Sbjct: 351 AKDVEGIELMYEDVPDTLK---QLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVL 407

Query: 400 KAFETGEDLYVTTYARSFNVA-------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + F T   +Y  T A+ F++         +   KD R  GKV  LALGYQGG  A + M 
Sbjct: 408 EVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG 467

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +                               ++    EH ++D+            WR 
Sbjct: 468 A-------------------------------LENGIEEHELQDIV---------DRWRT 487

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571
            + R+   W+E  +A    ++NG      K+    L + KK    L + LPSGR L Y  
Sbjct: 488 ANKRIKNFWHETQKAVIDCLQNG----GIKKGPRGLKFYKK-AGFLFIQLPSGRKLAYAK 542

Query: 572 ------DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                 D G    Y     +   T + TYGGKL ENIVQA +RD+LAE M    + GY I
Sbjct: 543 AHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPI 602

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V  VHDE V E P+ ++ +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 603 VFHVHDEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
 gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
          Length = 646

 Score =  323 bits (828), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 230/698 (32%), Positives = 341/698 (48%), Gaps = 83/698 (11%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S +DL KCG+  YA+     V+LFA+ FD    ++ D      +P  +  A+
Sbjct: 5   LEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAAI 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + DV   A N+ FERT L   F   +    W C+ V A    LP +L+ VG  L L  Q
Sbjct: 65  FDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQQ 124

Query: 122 KMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE- 176
           KM+EGK+LI  F   CK         RN P H  E W LF  YC  DV V +EI ++L+ 
Sbjct: 125 KMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRKLQH 184

Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTYGLVSS 232
            P+   E EL+ LDQ INDRG  VD  L   A + + +     TK   EL  L      +
Sbjct: 185 FPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTGL-----EN 239

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + ++K+WL  E G+ +E L++ T   ++  +     + +++   R+  ++++V K  
Sbjct: 240 PNSVAQIKSWLG-ENGVEMESLSKKTVAGLIEESDGEVQELLRL---RLLMAKTSVKKYE 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL----PT 348
            +  ++ SDGR+ G LQF GA+RTGRW+G +   QNLP+      E+ + +         
Sbjct: 296 AMERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDV 355

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
            +  D  P  ++S+ +R+  I   G + VVAD + IEARVLAW++GE+W+L+ F +   +
Sbjct: 356 ELLYDSTP-NVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKI 414

Query: 409 YVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           Y  + +  F+V   +VTK    R  GK+ ELALGY G   A   M +   L++     LV
Sbjct: 415 YEASASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMGA---LDMG----LV 467

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +   AP                                 +  AWR  +  +++ W ++  
Sbjct: 468 EEELAP---------------------------------LVSAWRSANPHITQFWWDVDA 494

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTT 584
           A        KA+  +K+     +  +     L + LPSGR L Y    +  N+   N  T
Sbjct: 495 A------AVKAVTEKKKTRAGRIVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLT 548

Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                  ++  R  TYG KL ENIVQ  +RD+LAE M+   + GY IV+  HDEI+ E P
Sbjct: 549 YEGIAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVP 608

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +       M   +M   P WA GLPL+A+GYE   Y+K
Sbjct: 609 EGTGSVEEMC-AVMAVQPEWADGLPLRADGYECAFYKK 645


>gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 650

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 239/715 (33%), Positives = 333/715 (46%), Gaps = 106/715 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET   +D+ K G  KY E     ++LFA+ F+D PVE+ D      +PQ +K
Sbjct: 1   MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL N  +   A N+ FE   LK      I    W CT+V +   GLP +L  VG+ L+ 
Sbjct: 61  TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120

Query: 119 --SSQKMEEGKELIARFCK---------GETHECLYDRNKPNHR-EAWRLFGEYCKGDVT 166
               QKM+EGK LI  FCK         G T      RN P H  E W +F +Y K DV 
Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRT------RNLPEHAPEKWEIFKKYNKQDVE 174

Query: 167 VTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V R I  +L   P +  EQ LW LDQ INDRG   D+ L     +  +    +L +E   
Sbjct: 175 VERAIRNKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATE 234

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           LT GL S+     +LK W+    G  ++ LT+ +   ++  +K    +  ++   R   +
Sbjct: 235 LT-GL-SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKESK--DEKVKKILELRQLMA 290

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQII 343
           ++++ K  T+  A   DGR+RG LQF GA+RTGRW+G +   QNLP   ++H  +LD   
Sbjct: 291 KTSIKKYETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLP---QNHLPDLDDAR 347

Query: 344 THLPTS--------ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             + T           S PD L   S  +R+  I  EG + +VAD + IEARV+AW AGE
Sbjct: 348 NFIRTGQFDKVEFLYDSIPDTL---SQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGE 404

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           QW+L  F    D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A   M  
Sbjct: 405 QWRLDVFNNNGDIYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDK 464

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                           ++N PE  +  L          K WR  
Sbjct: 465 --------------------------------KKNIPEDELPGLV---------KDWRDA 483

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK---DKNNLILMLPSGRSLVY 570
              +++ W ++ +A ++ I        R+R  V L +  K   D   L + LPSGR L Y
Sbjct: 484 SPHITKFWWDVDKAAKKAI--------RERTTVVLQFGLKFIYDPGVLFIQLPSGRKLAY 535

Query: 571 -RDVGNNRSY---------LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
            R       Y         L  T++Q T   TYG K+ ENIVQA +RD L   M      
Sbjct: 536 IRPKIEPGPYDKPIITYEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDK 595

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           G+ IV+ VHDE++C+ P   +     +  +      WA GLPLKA+GYE   Y K
Sbjct: 596 GFHIVMHVHDELICDVP-KGKGTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649


>gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK115]
          Length = 645

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 229/710 (32%), Positives = 334/710 (47%), Gaps = 101/710 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLTKCG+ +Y +     ++LFA+  D+   ++ D      +P+ + 
Sbjct: 1   MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FER  L       +    W CT V A S GLP +L+ VG  L +
Sbjct: 61  SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EG+ LI  F   C+      + +RN P+H  E W LF  YCK DV V + I KR
Sbjct: 121 EEQKMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIRKR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAH--TLNQIVDVER-TKLDQELESLTYGL 229
           L   PL   EQ L+ LDQ INDRG  VD  L     L  +   E+ T+   EL  L    
Sbjct: 181 LSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSGL---- 236

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +   + +LK WL    G+ ++ L +    + L   K++  + +++   R+  S+++V 
Sbjct: 237 -DNPNSVSQLKGWLE-NQGVFMDSLGKKDVAKQL---KEVDGEILEMLKLRLLMSKTSVK 291

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---- 345
           K   +   + SD R+ G LQF GA+RTGRW+G +   QNLP+      +L + +      
Sbjct: 292 KYQAMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQL 351

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
               +  D  P  ++S+ +R+  +   G + +VAD A IEARVLAW++GE W+L+ FE G
Sbjct: 352 KALDLLYDNVP-NVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQG 410

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
            D+Y  + A  F V   +  V    R  GK+ ELALGY G   A + M +   GL+    
Sbjct: 411 GDIYCASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALDMGLDEEEL 470

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV                                           WR  +  +   W 
Sbjct: 471 QPLVNQ-----------------------------------------WRMANPHIVAFWW 489

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR---------------- 566
            + +A ++  E       R+ + V  + +        + LPSGR                
Sbjct: 490 VIDKASKEVYET------REPQKVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGK 543

Query: 567 -SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
             L Y  +G N+ +        +R  TYG KL ENIVQ ++RD+LA GMM   K   DIV
Sbjct: 544 PGLTYEGIGENKKW--------SRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIV 595

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           L VHDE V E  +  E +   +  L  + P WA+GLPL+A+GY  + Y+K
Sbjct: 596 LHVHDEAVVEVKEG-EASVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644


>gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9]
 gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9]
          Length = 640

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 238/703 (33%), Positives = 347/703 (49%), Gaps = 92/703 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL+++T    
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITGLAN 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +SR   +L  WL  E G     LT+   ++ L   K    +  +V   +++ + S++ K
Sbjct: 239 PNSRA--QLLPWL-KEHGYSANGLTKADVEQEL---KTAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R     ++LD    ++    
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349

Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             D D ++I+ D         VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F
Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVF 407

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            T   +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M +   LN+   
Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                 ++E   +  ++D             WR+ + ++ + W 
Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575
           ++ +A  + I++   I   K R       +  K  L + LPSGR+L Y        D G+
Sbjct: 488 DVQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541

Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              Y     +   T + TYGGKL ENIVQA +RDILAE ++    AGY +V  VHDE + 
Sbjct: 542 KIIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAII 601

Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E      +E N      LM   P WA+GLPL +EGY +K Y K
Sbjct: 602 EGSGLTIEEVN-----DLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 662

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 231/718 (32%), Positives = 336/718 (46%), Gaps = 108/718 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL  CG+ +Y E  D  V+LFA+ +DD PV++ D      +P  + 
Sbjct: 9   MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L + +V   A N+ FERT +K  F +     +W CT V A + GLP  L+ V E LKL
Sbjct: 69  HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR--EAWRLFGEYCKGDVTVTREIFK 173
            +QK   GK LI  F   CK         RN P H   E W  +  Y   DV V RE+ +
Sbjct: 129 EAQKDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREVRR 188

Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +LE  P+   E +LW LDQ INDRG  +D  L +      D  +T L QE + +T   + 
Sbjct: 189 KLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDITQ--LE 246

Query: 232 SSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           +   L KLK WL  E GL   D    E     ++ +  + T + +Q+   R    +++V 
Sbjct: 247 NPNSLTKLKEWL-AEQGLETPDGLGKEHMPTLLVQAPDEDTRRVLQI---RQELGKTSVD 302

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSH 336
           K N +  ++ +DGR RG LQF GA+RTGRW+G +   QNLP+              S   
Sbjct: 303 KYNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREVLKSGDF 362

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           + L+ +   LP+          ++S  +R+  I S G + +V+D + IEAR++AW+A E 
Sbjct: 363 DLLEMLYGALPS----------VLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEH 412

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKM 451
           W L  F+    +Y    ++ F V    + K       RA GKV  LA GYQGG  A  KM
Sbjct: 413 WVLNVFQDHGKIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKM 472

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
            +                               ++   PE  +  +          K WR
Sbjct: 473 GA-------------------------------LKSGIPEEELPGIV---------KRWR 492

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK---NNLILMLPSGRSL 568
           + + R+ +LW    +A    +        R++R VPL +  K +     L   LPSGRSL
Sbjct: 493 KANPRIVKLWYAAEEAALTAV--------REKRTVPLAHGVKYRYKSGTLFADLPSGRSL 544

Query: 569 VYRDV-----------GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
            Y +            G     ++   ++     TYGG+L EN+VQA++RD LAE +M  
Sbjct: 545 AYVNPRIKPDPNFGKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRL 604

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             A Y  V+ VHDE+V + P     +   +  +M+    WA GLPL A G+E + Y+K
Sbjct: 605 DAAEYRTVMHVHDEVVLDVP-IGTGSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661


>gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
 gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
          Length = 640

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 234/699 (33%), Positives = 339/699 (48%), Gaps = 84/699 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET SP+ L K G+ KY    D  ++LF++  D   V   D      +P  + 
Sbjct: 1   MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL ++ VT  A+N+ FERT L A     +    W C++V A + GLP +LK VG+ L L
Sbjct: 61  DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKRLE- 176
            +QKM+EGK+LI  FC  + +     R  P+   A W+LF  Y   DV V   I ++L  
Sbjct: 121 DAQKMDEGKDLIKHFCVPDDNS---QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLAD 177

Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            P+     E + +DQ INDRG  +D  LA     I +  R +       LT GL + +  
Sbjct: 178 FPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLT-GLDNPASP 236

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L+ L+ WL  + G  +E + + +    L++      +A+++   R   SRS+V K   ++
Sbjct: 237 LQ-LQEWLN-QHGCPIESMAKESVDDALANATGQVREALEL---RQELSRSSVAKYRKMI 291

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSHEE---LDQIITHLPTS 349
           +   +D R  G LQF GA+RTGRW+G +   QNLPR   P  +       D     L   
Sbjct: 292 DVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEML 351

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            +S PD L   S  +R+  I S   + +VAD + IEARVLAW+AGE+  L AF+ GEDLY
Sbjct: 352 YSSVPDTL---SQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLY 408

Query: 410 VTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHL 465
             T +  F V P +   V  + R  GK+  LA GY G   A + M +   GL+ +    +
Sbjct: 409 CATASAMFGV-PVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLSEDELQPI 467

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           V                                          AWRQ +  + +LW+++ 
Sbjct: 468 V-----------------------------------------DAWRQANPNIVQLWHKVD 486

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTT 583
            A  + I  G+ +  R       +  +K    L + LPSGR L Y    +G NR    + 
Sbjct: 487 NAATRAISTGRPLTLRN------LGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSI 540

Query: 584 T-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           T       R+  +  TYGGKL ENIVQA +RD+LAE +     AG+ IV+ +HDE+V + 
Sbjct: 541 TYWGQGVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDE 600

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P       + +  LM   P WA+GLP+ A GYE   Y+K
Sbjct: 601 PINSGTTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639


>gi|139473888|ref|YP_001128604.1| phage DNA polymerase [Streptococcus pyogenes str. Manfredo]
 gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2]
 gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2]
          Length = 640

 Score =  319 bits (818), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 238/703 (33%), Positives = 347/703 (49%), Gaps = 92/703 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT    
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +SR   +L  WL  E G  +  LT+   ++ L   K    +  +V   +++ + S++ K
Sbjct: 239 PNSRA--QLLPWL-KEHGYSVNGLTKADVEQEL---KTAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R     ++LD    ++    
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349

Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             D D ++I+ D         VR+ ++A +     V+D + IEARV+AW AGEQW+L  F
Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVF 407

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            T   +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M +   LN+   
Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                 ++E   +  ++D             WR+ + ++ + W 
Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575
           ++ +A  + I++   I   K R       +  K  L + LPSGR+L Y        D G+
Sbjct: 488 DVQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541

Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              Y     +   T + TYGGKL ENIVQA +RDILAE ++    AGY +V  VHDE + 
Sbjct: 542 KIVYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAII 601

Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E      +E N      LM   P WA+GLPL +EGY +K Y K
Sbjct: 602 EGSGLTIEEVN-----DLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 645

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 228/705 (32%), Positives = 348/705 (49%), Gaps = 91/705 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL K G+  Y  + +  ++LFA+ FD   V++ D      +P  + 
Sbjct: 1   MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL N ++   A N+ FER  L    N  +  + W CT V A + G P +L  V + L L
Sbjct: 61  EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           + QKM+EGKELI  F   CK         RN P H  E W  F +YC  DV V R I K+
Sbjct: 121 TEQKMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIRKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+S  EQ  + LD  INDRG  VD+ L     +   + +     E + LT GL  +
Sbjct: 181 LSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQRLT-GL-DN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL +E G+ ++ L++     +    K+   +  ++ N R++ +++++ K  
Sbjct: 239 PNSVAQLKQWL-IENGVEVDSLSKKAVSDL---AKEADGEVERLLNLRLQLAKTSIKKYE 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +  A+  D R+RG LQF GA+RTGRW+G +   QNLP   ++H +   +  +L  S   
Sbjct: 295 AIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHLKDLTLARNLVKSGDF 351

Query: 353 DPDPL------QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D   L       ++S+ +R+  I     + +VAD + IEARV+AW+AGE+W++  F T  
Sbjct: 352 DTLALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHG 411

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ F V   ++TK    R  GK+ ELALGY G   A   M +   L++     
Sbjct: 412 KIYEASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMGA---LDMGV--- 465

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                         ED   G        AWRQ +  +++LW ++
Sbjct: 466 -----------------------------AEDELQGLVT-----AWRQANPNITKLWWDI 491

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-----------RDV 573
            +A  + ++    ++  K      + ++ +   + + LPSGR L Y           RD 
Sbjct: 492 DKAAIKAVKKKTTVMVGK------IKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDA 545

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                     T++  R  TYG KL ENIVQA++RD+LAE M+   + GY+IV+ +HDEIV
Sbjct: 546 VTYEGI--GATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIV 603

Query: 634 CETPDTDEFNASMLY---HLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E P     N   L     +M   P+WA+ LPL+A+G+E + YRK
Sbjct: 604 IEAP----LNFGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644


>gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
 gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
          Length = 644

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 221/701 (31%), Positives = 334/701 (47%), Gaps = 84/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L  CG+ +YA  E   ++LFA+  +D P ++ D      MP+ + 
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V   A N+ FER  +   F L +    W CT V A    LP +L+ VGEAL L
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             +KM EGK+LI  F   CK         RN P+   E W LF  YC  DV V ++I  +
Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLDQELESLTYGL 229
           L   P+  +EQEL+ +DQ INDRG  VD   ++ A   + +     +K   E+  L    
Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISGL---- 236

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +   + +LK WL  E G+ ++ L +   + ++   +K   +  ++   R+  S+++V 
Sbjct: 237 -ENPNSVSQLKDWLN-EKGIEVDSLAKAAVEELV---EKTEGEVSEMMKLRLSMSKTSVK 291

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT----H 345
           K   +  ++  DGR+ G LQF GA+RTGRW+G +    NLP+      EL + I     +
Sbjct: 292 KYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRY 351

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
               +  D  P +++S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F   
Sbjct: 352 DLVELLYDSTP-EVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGA 410

Query: 406 EDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             +Y  T ++ F++   ++TK    RA GKV  LA  Y G   A   M +   +      
Sbjct: 411 GKIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEEELK 470

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV++                                         WR  +  +   W E
Sbjct: 471 GLVQS-----------------------------------------WRTANPHIVNYWYE 489

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--------RDVGN 575
           +  A +  ++       RK   V  V +      L + LPSGR L Y        R    
Sbjct: 490 IDGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSE 543

Query: 576 NRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           + SY    T R+ TR  +YG K  ENIVQA +RD+LAE M+   K G+DIV  +HDE+V 
Sbjct: 544 SVSYEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVL 603

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P+    +   +  +M   P W +GLPLKA G+ES  Y+K
Sbjct: 604 EVPEGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 646

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 235/703 (33%), Positives = 331/703 (47%), Gaps = 91/703 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           TL ID ET S +DL  CG+ KY+      ++L A+  DD      D  +    P+   E 
Sbjct: 4   TLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIEM 63

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  VT  A N+ FERT     ++       W CT V A    LP +L+ VG  L L  
Sbjct: 64  LFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLDK 123

Query: 121 QKMEEGKELIARFC---KGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE 176
           QKM EGKELI  FC   K         RN P +  E WR F  YC  DV V ++I +RL 
Sbjct: 124 QKMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQRLA 183

Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTYGLVS 231
             P+  +EQE++ LDQ INDRG  VD  L   A   + +     T    EL  L      
Sbjct: 184 KFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTGL-----E 238

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +   + +LK WL  E GL ++ L + T + +   + K      +V   R+  S+++V K 
Sbjct: 239 NPNSVSQLKLWL-KEKGLEVDSLAKDTVKDL---SMKAEGDVQEVLKLRLATSKTSVKKY 294

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT----HLP 347
             +  ++ ++ R+ G LQF GA+RTGRW+G +    NLP+      EL + +     +  
Sbjct: 295 EAIDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEE 354

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +  +  P  ++S+ +R+  +A  G + +++D + IEARVLAW+AGE+W+L+ FET   
Sbjct: 355 VELFYESTP-NVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGK 413

Query: 408 LYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + +  F+VA  ++TK    R  GK+ ELALGY G   A   M +   GL       
Sbjct: 414 IYEASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMGALKMGLTEEELPG 473

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           LV T                                         WR  +  ++  W  +
Sbjct: 474 LVST-----------------------------------------WRSANPHITAFWWAV 492

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A    + +      +K   V  V  +     L + LPSGR L Y      R  LN   
Sbjct: 493 DEAAVTAVRD------KKPSKVGRVSFEYKSGILFVTLPSGRKLSYV---KPRMMLNKFG 543

Query: 585 RQ-LTRE-----------YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           R+ LT E            TYG KL ENIVQA SRDILAE M+   K G+DIV  VHDE+
Sbjct: 544 REGLTYEGIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEV 603

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E PD    +   +  +M  NP W +GLPLKA G+ES  Y+K
Sbjct: 604 VLEVPDGKS-SVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645


>gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
 gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
          Length = 644

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 222/707 (31%), Positives = 336/707 (47%), Gaps = 96/707 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L  CG+ +YA  E   ++LFA+  +D P ++ D      +P  + 
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V   A+N+ FER  +   F L +    W CTLV A    LP +L+ VGEAL L
Sbjct: 61  EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             +KM EGK+LI  F   CK         RN P+   E W LF  YC  DV V ++I  +
Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIRNK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLDQELESLTYGL 229
           L   P+  +EQ+L+ +DQ INDRG  VD   +  A   + +     TK   E+  L    
Sbjct: 181 LAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISGL---- 236

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +   + +LK WL  E G+ ++ L +   + ++ + +    + +++   R+  S+++V 
Sbjct: 237 -ENPNSVSQLKDWLN-EKGIEVDSLAKAAVEELVENTQGDVAEMMKL---RLAMSKTSVK 291

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---- 345
           K   +  ++  DGR+ G LQF GA+RTGRW+G +    NLP+      EL + +      
Sbjct: 292 KYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRY 351

Query: 346 --LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +     S PD   ++S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F 
Sbjct: 352 DLVELLYDSTPD---VLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFR 408

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
               +Y  T ++ F++   ++TK    RA GKV  LA  Y G   A   M +   +    
Sbjct: 409 GAGKIYEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGALNFVEEEE 468

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV++                                         WR  +  +   W
Sbjct: 469 LKGLVQS-----------------------------------------WRTANPHIVNYW 487

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--------RDV 573
            E+  A +  ++       RK   V +V +      L + LPSGR L Y        R  
Sbjct: 488 YEIDGAVKAAVKE------RKMTKVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFG 541

Query: 574 GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
             + SY    T R+ TR  +YG K  ENIVQA +RD+LAE M+   K G+DIV  +HDE+
Sbjct: 542 SESVSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEV 601

Query: 633 VCETPD----TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E P+     +E N      +M   P W +GLPLKA G+ES  Y+K
Sbjct: 602 VLEVPEGTSSVEEVNG-----IMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047]
 gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047]
          Length = 640

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 238/703 (33%), Positives = 346/703 (49%), Gaps = 92/703 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           KL  +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLVQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT    
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +SR   +L  WL  E G  +  LT+   ++ L   K    +  +V   +++ + S++ K
Sbjct: 239 PNSRA--QLLPWL-KEHGYSVNGLTKADVEQEL---KTAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R     ++LD    ++    
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349

Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             D D ++I+ D         VR+ ++A +     V+D + IEARV+AW AGEQW+L  F
Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVF 407

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            T   +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M +   LN+   
Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                 ++E   +  ++D             WR+ + ++ + W 
Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575
           ++ +A  + I++   I   K R       +  K  L + LPSGR+L Y        D G+
Sbjct: 488 DVQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541

Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              Y     +   T + TYGGKL ENIVQA +RDILAE ++    AGY +V  VHDE + 
Sbjct: 542 KIVYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAII 601

Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E      +E N      LM   P WA+GLPL +EGY +K Y K
Sbjct: 602 EGSGLTIEEVN-----DLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 229/712 (32%), Positives = 344/712 (48%), Gaps = 92/712 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           T+ +D ET S ID+ + G+  YA   D  ++L  + +D   V++ D       P+     
Sbjct: 2   TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             E L + DV   A+N+ FERT L +     +P  +W CT V A + GLP  L  VGEAL
Sbjct: 62  FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121

Query: 117 KLSSQKMEE--GKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L   K ++  GK LI  FCK         +  RN P H  + W+LF EY + DV     
Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++L+  P++ +EQELW LDQ IND G  +D+ LA  + Q   + + +L QE   LT G
Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLT-G 240

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP-----QAIQVFNNRMRA 283
           L ++   L +LK W F+  GL +  +T+ +   + +  K+L         +++   R   
Sbjct: 241 L-NNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIRKEL 299

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +++V K   +  A+  DG LRG LQF GA+RTGRW+G +    NLP+      +L + +
Sbjct: 300 GKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLARDL 359

Query: 344 THLPTSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                    D D L+++        S  +R+  I SEG + VV+D + IEARV+AW+A E
Sbjct: 360 VK-----QEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADE 414

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS 453
           +W+L  F T   +Y  + A+ F+V    + K    R  GKV ELALGY GG  A + M  
Sbjct: 415 KWRLNVFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMD- 473

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                        K  + P++                               +   WR+ 
Sbjct: 474 -------------KAGTIPDD---------------------------EIPMIIANWRKA 493

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              + +LW     A    IE  + I  + +  +   Y+ +    L + LPSGR L Y D 
Sbjct: 494 SPNICKLWRNAEAAARAAIEERRTI--KLKHGLSFSYINR---ILFIGLPSGRKLAYYDT 548

Query: 574 -------GNN---RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
                  G +    + ++  T++  R  T+GGKL ENIVQA +RD LA  M   + AGY 
Sbjct: 549 RIEDDEKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQ 608

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           IV+ VHDEI+ + P+TD      +  +M     WA+ LPL+ +GYE+  Y+K
Sbjct: 609 IVMHVHDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660


>gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
          Length = 644

 Score =  317 bits (812), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 225/707 (31%), Positives = 333/707 (47%), Gaps = 96/707 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L  CG+ +YA  E   ++LFA+  +D P  + D      MP  + 
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V   A N+ FER  +   F L +    W CT V A    LP +L+ VGEAL L
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             +KM EGK+LI  F   CK         RN P+   E W LF  YC  DV V ++I  +
Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLDQELESLTYGL 229
           L   P+  +EQEL+ +DQ INDRG  VD   ++ A T + +     +K   E+  L    
Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISGL---- 236

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +   + +LK WL  E G+ ++ L +   + ++   +K   +  ++   R+  S+++V 
Sbjct: 237 -ENPNSVSQLKEWLN-EKGIEVDSLAKAAVEELV---EKTEGEISEMMKLRLSMSKTSVK 291

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---- 345
           K   +  ++  DGR+ G LQF GA+RTGRW+G +    NLP+      EL + I      
Sbjct: 292 KYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRY 351

Query: 346 --LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +     S PD   ++S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F 
Sbjct: 352 DLVELLYDSTPD---VLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFR 408

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
               +Y  T ++ F++   ++TK    RA GKV  LA  Y G   A   M +   +    
Sbjct: 409 GAGKIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEEE 468

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV++                                         WR  +  +   W
Sbjct: 469 LKGLVQS-----------------------------------------WRTANPHIVNYW 487

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--------RDV 573
            E+  A +  ++       RK   V  V +      L + LPSGR L Y        R  
Sbjct: 488 YEIDGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFG 541

Query: 574 GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
             + SY    T R+ TR  +YG K  ENIVQA +RD+LAE M+   K G+DIV  +HDE+
Sbjct: 542 SESVSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEV 601

Query: 633 VCETPD----TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E P+     +E N      +M   P W +GLPLKA G+ES  Y+K
Sbjct: 602 VLEVPEGTSSVEEVNG-----IMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35]
 gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35]
          Length = 650

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 237/701 (33%), Positives = 336/701 (47%), Gaps = 85/701 (12%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + DV   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIANK 182

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T GL  +
Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N   
Sbjct: 417 KIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV +                                         WR  +  +   W  
Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577
             +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N     
Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P  D      +  +M     WAKGL L ++G+ S  Y K
Sbjct: 610 EIP-KDSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 651

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 339/707 (47%), Gaps = 96/707 (13%)

Query: 8   FETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            ET S +DL  CG+ KY  +ED  ++LFA+  DD PV++ D      +P  + + ++   
Sbjct: 1   METYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPA 60

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS--SQKM 123
           +   AHN+ FER  L       +   +W C+++ A   GLP++LK VG  L LS   QKM
Sbjct: 61  IIKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKM 120

Query: 124 EEGKELIARFCK--------GETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             GK LI+ FCK        G+       RN P +  E W+LF +YC  DV   REI  +
Sbjct: 121 RIGKTLISYFCKPCKPTRVNGQR-----SRNTPADAPEKWQLFKDYCHRDVETEREISNK 175

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L+  P+ + E ELW  DQ +ND G  +D+ + HT+         +L  E E +T G+   
Sbjct: 176 LDKFPIPASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNGI--G 233

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            + + +LK W+  +    +E L +     +L  +  ++P+  +V   R  + ++++ K  
Sbjct: 234 PKKIAQLKEWICRKEDRSIESLDKDAVIELL-KDSSISPETRRVLQIRQESGKTSITKYA 292

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +  ++ +D RL G LQF GA+RTGRW+G +F PQNLPR + +  EL + +       + 
Sbjct: 293 AIQRSVCNDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESL 352

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           D       Q+ S  +R+ VI   G    +AD + IEAR+ AW   E+W+ + F T   +Y
Sbjct: 353 DMLYGSYNQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIY 412

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNTFAHLV 466
             + A+ F+V    VTK  D R  GKV ELALGY GG  A ++M  +  GL+ +    +V
Sbjct: 413 EASAAQMFHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMGGADMGLSEDEMQDIV 472

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                      WR     + ++W  +  
Sbjct: 473 NK-----------------------------------------WRLASPNIKKMWYRVQD 491

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKK---DKNNLILMLPSGRSLVY-------RDVGNN 576
           A    +        R+R+ V +V+  +       L   LPSGR L Y          G+ 
Sbjct: 492 AAYTAV--------RERKRVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDE 543

Query: 577 RSYL-------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
            +Y           T++  R+ T+GGKL EN++QA++RD LA+ M+     GY I++ +H
Sbjct: 544 LTYEGYGSDQDGKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIH 603

Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE+V E P +T E     +  +M     WA GL L A+G+ S+ YRK
Sbjct: 604 DEVVVEVPSETAESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650


>gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes
           MGAS315]
 gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage
           315.6]
 gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 640

 Score =  316 bits (809), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 236/703 (33%), Positives = 346/703 (49%), Gaps = 92/703 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT    
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +SR   +L  WL  E G     LT+   ++ L   K    +  +V   +++ + S++ K
Sbjct: 239 PNSRT--QLLPWL-KEHGYSASGLTKADVEKEL---KTAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SDGR+ G LQF GASRTGRW+G V   QNL R     ++LD    ++    
Sbjct: 293 YEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349

Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             D D ++I+ D         VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F
Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVF 407

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            T   +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M +   LN+   
Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                 ++E   +  ++D             WR+ + ++ + W 
Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575
           ++ +A  + I++   +   K R       +  K  L + LPSGR+L Y        D G+
Sbjct: 488 DVQRAAIKAIKSRAPVRLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541

Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              Y     +   T + TYGGKL ENIVQA +RDILAE ++    AG+ +V  VHDE + 
Sbjct: 542 KIVYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAII 601

Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E      +E N      LM   P WA+GLPL +EGY +K Y K
Sbjct: 602 EGSGLTIEEVN-----DLMAQAPEWAEGLPLNSEGYITKYYMK 639


>gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 655

 Score =  316 bits (809), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 242/713 (33%), Positives = 338/713 (47%), Gaps = 97/713 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TLF D E+ SP  L K G+  YAE  D  ++LF +  D  PV++ D      MP  + 
Sbjct: 1   MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109
            AL ++ V   AHN+ FER  L A              +   +W CT++ +   GLP +L
Sbjct: 61  AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNHRE-AWRLFGEYCKGDV 165
            AV   LKL  QK   GK+LI +FC   T   L     RN P+     W  F +Y + DV
Sbjct: 121 DAVAAVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  RL   P+   E + + LDQ IND G  +D  L      + +  R       +
Sbjct: 181 EVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT GL + +  ++ LK WL +  G  LE L +      L +   +  + +++   R   
Sbjct: 241 KLT-GLDNLNSPIQ-LKQWL-VTRGCELESLAKAEVDAALDTATGVVKEVLEL---RGDL 294

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +     +DGR RG +QF GA RTGR++G +   QNLPR      +LDQ  
Sbjct: 295 AKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPR--NYLPDLDQAR 352

Query: 344 THLPTS--------ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           + + T           S PD L   S  +R+  I S G + +VAD + IEARV+AW+AGE
Sbjct: 353 SLVQTGNLDALELLYESVPDTL---SQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGE 409

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKM- 451
              L AF  G+DLY  T +R F+V P +   +  + R  GK+  LA GY G   A + M 
Sbjct: 410 TTTLAAFREGKDLYCETASRMFDV-PVEKHGINGELRQKGKIAVLACGYGGSVGALKAMG 468

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A T GL                                 EH ++ +           AWR
Sbjct: 469 AFTMGL--------------------------------AEHELKPIV---------DAWR 487

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           Q +  + +LW ++ QA    I + + I  R  R         +   L + LPSGR L Y 
Sbjct: 488 QANPHIVQLWADVEQAAIAAISSRQPIRLRNLR------FSVESGILFIELPSGRRLAYV 541

Query: 572 D--VGNNR-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              +G NR           TT R+  +  TYGGKL ENIVQA++RD+L  GM    KAG+
Sbjct: 542 QPRLGENRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGH 601

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV+ VHDEIV + P   +F  +    LM++ P+WA+GLPL A+GYE   YRK
Sbjct: 602 RIVMHVHDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654


>gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
 gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
          Length = 653

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 337/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725]
 gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725]
          Length = 657

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 238/719 (33%), Positives = 347/719 (48%), Gaps = 107/719 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +D+ K G+ KYA  +D  ++LFA+  D   V++ D     ++P+V+ 
Sbjct: 1   MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL + ++   A+N+ FE   L         I +W  T+      G  + L A G A+ L
Sbjct: 61  EALNDKNIIKHAYNAPFEWWCLNQA-GYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119

Query: 119 SSQKMEE--GKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
              K ++  GK LI  FC   K         RN P+H  E W LF  YC  DV    EI+
Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTY 227
           KRL   P+  +EQELW LDQ IN  G  +D  L   A ++N IV  E T+     E++  
Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTE-----EAIQV 234

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  +TG  +E+L + T   ++ S +    +A++V   R   ++++
Sbjct: 235 TGLDNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLED--KEAVRVLEIRQELAKTS 292

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD---QIIT 344
           + K   + EA+  DGR+RG LQF GA+RTGRW+G +   QNLPR     E LD   +I+ 
Sbjct: 293 IKKYVAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPR--NYLETLDYAREIVK 350

Query: 345 HLPTSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                 + D D L+++        S  +R+  + SEG K VVAD + IEARV+AW+AGEQ
Sbjct: 351 ------SQDADFLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQ 404

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKM 451
           W+ + F T   +Y  + ++ F V    + K       R  GKV ELALGY G + A   M
Sbjct: 405 WRQEVFATHGKIYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAM 464

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
            +                               +     E  + D         V + WR
Sbjct: 465 GA-------------------------------LDMGLEEKELPD---------VVRRWR 484

Query: 512 QKHSRVSELWNELHQAFEQTIENG-----KAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             + R+++LW  +  A  + +E G     K II    R++ L+Y   D++ L + LPSGR
Sbjct: 485 NANKRITDLWYGIENAVIKLMETGETQGLKGIIF--SREIDLIY---DQDFLTIKLPSGR 539

Query: 567 SLVY-------RDVGNNRSY---LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
            L Y          G+N  +   +N TT++   + TYGGKL ENIVQA+SRD LA  +  
Sbjct: 540 KLYYPKPHLKENRFGSNALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKR 599

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               G   V+ +HDE V +     + N   +  LM     WA GL LKA G+ES  Y K
Sbjct: 600 LETEGLQTVMHIHDEAVIDADPNVDLNK--VCELMGQPIEWAPGLLLKAAGFESGYYMK 656


>gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
 gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
          Length = 653

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 337/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KESTGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
 gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
          Length = 601

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 219/660 (33%), Positives = 328/660 (49%), Gaps = 78/660 (11%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIPIH 91
           +A G D+ P+ LW    D  +P+ +      ++ TI A NS+FE  +        + PI 
Sbjct: 3   YAIG-DEDPI-LWLPGDD--LPEFVTNP---SEFTIYAWNSFFEWCIWHHVQEWSNAPIF 55

Query: 92  RWICTLVLARSNGLPSALKAVGEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            W  T  LA    +P AL A  +AL L    QK + GK LI R  K    + + D +   
Sbjct: 56  LWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSKPNRGKRIQDADLLE 115

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
                  F EYC+ DV V R +  RL PLS++E+++W LDQTIN RG  +D         
Sbjct: 116 E------FYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVENALL 169

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
           I+D    KL+QE+  LT   +++    +++  ++  E G  L    +   + VL  ++ L
Sbjct: 170 IIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLE-DETL 228

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P A ++   R +  +++  K   L + +  D R  G L + GA+ TGRWSG  F PQNL
Sbjct: 229 PPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQNL 287

Query: 330 PRPS-RSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           PRPS +  +   ++  H  + +      DP++ +S  +R  + A EGK+L+V D + IEA
Sbjct: 288 PRPSFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDYSQIEA 347

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVL W+AG++  L     G ++Y  T ++ + V P +V ++QR IGKV  LALGYQGGAK
Sbjct: 348 RVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQGGAK 407

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
           AFQ MA   G+ ++T                                  DL      + +
Sbjct: 408 AFQGMAEVYGVEIDT----------------------------------DL-----ADEI 428

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           K  WR  + ++ + W  + +A    + + GK        ++  +  +   N L   LPSG
Sbjct: 429 KVDWRVANRKIVKFWWGVEKAALNAVTHPGKTF------EIRAIKFRFTDNYLFCRLPSG 482

Query: 566 RSLVYRDVGNNRSYL----------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
           R L Y     +              N+ TR+  R+ TYGGKL ENI QAV+RD++AE M+
Sbjct: 483 RLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMAEAML 542

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               AGY++VL+VHDE++ E  D D  +      LM   P WAKGLP+ +EG+E  RYRK
Sbjct: 543 RVENAGYEVVLSVHDELIAEAND-DFGSVEEFEQLMCELPVWAKGLPVTSEGFECLRYRK 601


>gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30]
 gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30]
          Length = 653

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K  T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A]
 gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A]
          Length = 653

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 236/706 (33%), Positives = 338/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D  PV   D       P    
Sbjct: 1   MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL + +V   A N+ FER  L   FN ++P   W CT+V     GLP++L  VG
Sbjct: 61  YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L L +QK + GK LI  F   CK         RN P H  + W+ F +YC  DV V  
Sbjct: 121 EVLNLQNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++ +EQ+ W LDQ INDRG  +  +L    N++  + + +L ++   +T 
Sbjct: 181 SIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL + +   + LK WL  E GL + +L + T Q  L   K  T +A Q+   R++ S+++
Sbjct: 240 GLENPNSPSQLLK-WLNEEQGLDIPNLQKKTVQEYL---KYATGKAKQMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M  D R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELNIARDFIK 354

Query: 348 ------TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   +  D  P  ++S  VR+   A EG  L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + A+ F V    + K    R  GKV ELALGYQGG  A + M +   G++
Sbjct: 415 FNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMGALDMGID 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +    LV +                                         WR+ +  + 
Sbjct: 475 ESELQGLVDS-----------------------------------------WRKANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W     A  +T+   +  +    R     YMK  K  L++ LPSGRSL Y    VG N
Sbjct: 494 AFWKGCQDAAIETVRTRQTHLTHGLR----FYMK--KGFLMIELPSGRSLAYPKARVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ T+  TYGGKL ENIVQA +RD+LA  M     AG+ IV  VH
Sbjct: 548 SWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E PD        + ++M+    WA+GL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPDGSG-GLKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652


>gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 653

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 236/706 (33%), Positives = 337/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYL---KRATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M +D R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P  D      +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIP-KDSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
          Length = 653

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K  T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
          Length = 567

 Score =  313 bits (802), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 225/575 (39%), Positives = 294/575 (51%), Gaps = 64/575 (11%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F EY + DV   R++ KRL     S  E  LW+LDQTINDRG  VD  LA      V
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L    E+LT G V ++   + L   L  E G+ L D+ + T +R L  +  L P
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL--DDPLLP 120

Query: 272 QAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           + + ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 331 RPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           RP+ S   +   I  +      +  D D + + S  +RSC+IA   KKLVVADL+ IE R
Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFD-DVMALTSSALRSCLIAPTHKKLVVADLSNIEGR 239

Query: 388 VLAWMAGEQWKLKAFE----------------------------------------TGED 407
           VLAW+AGE  KL AF                                          G+D
Sbjct: 240 VLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDD 299

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y   YA SF +AP  VTK QR IGKV ELALGY GG  AF   A+   ++L   A   +
Sbjct: 300 IYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--Q 357

Query: 468 TNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
               P   ++A    +W + N  P   + D     AC+  K+AWR  H  ++  W  L  
Sbjct: 358 AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQF 416

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT 582
           A    I + +            + M+  +  L + LPSGR L Y     D     SY+ T
Sbjct: 417 AATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGT 471

Query: 583 --TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
              TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D  
Sbjct: 472 HPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNA 531

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 532 AFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2]
 gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 650

 Score =  312 bits (800), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 237/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIANK 182

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T GL  +
Sbjct: 183 IKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N   
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV +                                         WR  +  +   W  
Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577
             +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N     
Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGENSWGSQ 549

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      GY IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEVIV 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 610 EIPRGSN-GLKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649


>gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A]
 gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A]
          Length = 650

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 236/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIANK 182

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T GL  +
Sbjct: 183 IKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q  L   K  T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N   
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV +                                         WR  +  +   W  
Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577
             +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N     
Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGENSWGSQ 549

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIV 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47]
 gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47]
 gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 653

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4]
 gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4]
          Length = 644

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 229/704 (32%), Positives = 346/704 (49%), Gaps = 90/704 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +PQ + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L       +    W C+ V + + GLP +L  VG  L L
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL---ESLTYGL 229
           LE  P+S  E E +++DQ INDRG  +D  L   +N  +  +    DQ L   + LT GL
Sbjct: 181 LERFPVSQNEWENYWMDQDINDRGIRIDQQL---VNNAIKCQENFHDQYLQVSQKLT-GL 236

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
            + +  L+ LK WL  + G++++ L++ +  ++L +    T +  QV + R   S+S+V 
Sbjct: 237 ANPNSPLQ-LKDWLN-QRGMNIDSLSKASVAQLLQTT---TGKVHQVLSLRQLLSKSSVK 291

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQII----- 343
           K   + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    EE  +++     
Sbjct: 292 KYQAMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNT 351

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
           T L     S PD   ++S  +R+  I S+G    VAD + +EARV+AW++GE+W+ KAF 
Sbjct: 352 TALSMLYDSVPD---VLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFA 408

Query: 404 TGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLN 460
             ED+Y  + ++ F V   +  V  + R  GK+ ELALGY G   A + M +T  GL   
Sbjct: 409 NNEDIYCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATNLGLTEE 468

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               LV+                                          WR     + + 
Sbjct: 469 ELHSLVQM-----------------------------------------WRNASPHIVQF 487

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRS 578
           W ++ +A ++ I   K+ + +    +  +Y       + L L SGR L Y    +G NR 
Sbjct: 488 WWDIDKAAKECI---KSHLPQATHGIKFIYR---SGCMFLRLRSGRKLCYSKPKIGINRF 541

Query: 579 YLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
              + T       ++  R  TYG KL ENIVQA SRD+LAE M     AG  +V+ +HDE
Sbjct: 542 GSESITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDE 601

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            V + P    ++   +  +MT  P WA GL L A G+ S  Y+K
Sbjct: 602 AVIDAPAN--YSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643


>gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           132]
          Length = 653

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 236/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K  T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 567

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 227/575 (39%), Positives = 295/575 (51%), Gaps = 64/575 (11%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F EY + DV   R++ KRL     S  E  LW+LDQTINDRG  VD  LA      V
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L    E+LT G V ++   + L   L  E G+ L D+ + T +R L  +  L P
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL--DDPLLP 120

Query: 272 QAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           + + ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 331 RPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           RP+ S   +   I  +      +  D D + + S  +RSC+IA   KKLVVADL+ IE R
Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDVVFD-DVMALTSSALRSCLIAPTHKKLVVADLSNIEGR 239

Query: 388 VLAWMAGEQWKLKAF----------------------------------------ETGED 407
           VLAW+AGE  KL AF                                          G+D
Sbjct: 240 VLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDD 299

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y   YA SF +AP  VTK+QR IGKV ELALGY GG  AF   A+   ++L   A   +
Sbjct: 300 IYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--Q 357

Query: 468 TNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
               P   ++A    +W + N  P   + D     AC+  K+AWR  H  ++  W  L  
Sbjct: 358 AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ- 415

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT 582
            F  T   G    A     + + Y    +  L L LPSGR L Y     D     SY+ T
Sbjct: 416 -FAATDAIGHPETAHTCCGITVQY---SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGT 471

Query: 583 --TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
              TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDE++ E  D  
Sbjct: 472 HPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNA 531

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 532 AFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 567

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 294/575 (51%), Gaps = 64/575 (11%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F EY + DV   R++ KRL     S  E  LW+LDQTINDRG  VD  LA      V
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L    E+LT G V ++   + L   L  E G+ L D+ + T +R L  +  L P
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL--DDPLLP 120

Query: 272 QAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           + + ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 331 RPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           RP+ S   +   I  +      +  D D + + S  +RSC+IA   KKLVVADL+ IE R
Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFD-DVMALTSSALRSCLIAPTHKKLVVADLSNIEGR 239

Query: 388 VLAWMAGEQWKLKAFE----------------------------------------TGED 407
           VLAW+AGE  KL AF                                          G+D
Sbjct: 240 VLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDD 299

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y   YA SF +AP  VTK QR IGKV ELALGY GG  AF   A+   ++L   A   +
Sbjct: 300 IYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--Q 357

Query: 468 TNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
               P   ++A    +W + N  P   + D     AC+  K+AWR  H  ++  W  L  
Sbjct: 358 AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQF 416

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT 582
           A    I + +            + M+  +  L + LPSGR L Y     D     SY+ T
Sbjct: 417 AATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGT 471

Query: 583 --TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
              TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDE++ E  D  
Sbjct: 472 HPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNA 531

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 532 AFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
 gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
          Length = 666

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 237/715 (33%), Positives = 334/715 (46%), Gaps = 98/715 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQV----L 57
           L+ID ET S +D+   G+ KYAE  D  V+L A+  DD  VEL D      + Q     +
Sbjct: 6   LYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVGV 65

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +  LE+ +    AHN++FE   LK   ++ I   RW CT+V     G P++L+ +GEAL 
Sbjct: 66  RRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEALD 125

Query: 118 L--SSQKMEEGKELIARFCK---------GETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           +     K+  GK LI  FCK         G T      RN P H  E W LF EYCK DV
Sbjct: 126 MPEDKAKLRTGKALINYFCKPCKPTKTNGGRT------RNLPKHASEKWELFREYCKRDV 179

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI-VDVERTKLDQELES 224
            V REI K L  +       W  D  +N RG  VD AL      I  +V+   LD  ++ 
Sbjct: 180 EVAREIDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDT-IKR 238

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +T   V + R   ++  WL       +  L   + + +L S+  LT  A  V        
Sbjct: 239 ITG--VDNPRSRAQVLDWLNDTLDEEITSLNAASVKALLESD--LTDDARAVLTAWQGLG 294

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +++  K  TL  A   D R+RG LQF GASRTGRW+G +  P NLPR    +  L+Q   
Sbjct: 295 KTSTKKYETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYN--LNQAGE 352

Query: 345 HLPTSITSDPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            +      D + L       +S  +R+C +  EG K V+ D + IEARVLAW+AGE W L
Sbjct: 353 LVKAGHKKDIELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVL 412

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAST 454
           + F+    +Y  T AR +N+  + + K       R  GK+  LALGYQG   A ++M ++
Sbjct: 413 EEFKGDGKIYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMGAS 472

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                                   ED F       + +AWR  +
Sbjct: 473 ----------------------------------------EDEFTDDELRGLVRAWRVAN 492

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK----DKNNLILMLPSGRSLVY 570
             ++ELW       + T+ +     +     +P+ +       +  NL + LPSGR L Y
Sbjct: 493 PCIAELWRYTEMMAKSTVSD--EFYSGTNPMIPISFKSTLNAVNGINLAIGLPSGRELYY 550

Query: 571 RD---VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD 623
            +   V     Y + T    T+E TYGGKL ENIVQA++RD+LA+ +   TK     G +
Sbjct: 551 HNPVIVDGAIYYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGIN 610

Query: 624 --IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             IVL VHDE+V E      E    +L  + ++ PSWA+GLPLK E + S  Y+K
Sbjct: 611 AHIVLHVHDEVVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665


>gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 653

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 236/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
 gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
          Length = 650

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 236/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIANK 182

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T GL  +
Sbjct: 183 IKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N   
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV +                                         WR  +  +   W  
Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577
             +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N     
Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGENSWGSQ 549

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIV 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
          Length = 653

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 235/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 726

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 224/703 (31%), Positives = 348/703 (49%), Gaps = 85/703 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET S  ++T  G+  Y +  +  ++LFA+  D   V+L D      +P  + 
Sbjct: 80  IKILSIDIETYSDNEITN-GVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL ++++   A N+ FER  +     L +   +W CT + A   GLP++L++ GE LKL
Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             +K+ EG ELI  F   CK         RN P H  + W  F  YC  DV V + I ++
Sbjct: 199 KHKKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQRK 258

Query: 175 -----LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                L P++  E+ L+  DQT+ND+G C+D  LA+   ++ D  + +L  E++ +T   
Sbjct: 259 VCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN-- 316

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           + +     +LK WL  + G  ++ L +   + + +   +   + + +   R  +S+++V 
Sbjct: 317 LENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGASEDVKRVLYL---RSMSSKTSVK 373

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           K   +  A  SD +L   LQF GA +TGRW+G +    NLPR S     L + +      
Sbjct: 374 KYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVK---- 428

Query: 350 ITSDPDPLQ--------IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
             +D + L+        I+S  +R+  IA E   L V D + IEARV+AW+AGE+W+LK 
Sbjct: 429 -KNDFELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKV 487

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F     +Y  + AR F V    +T D   R  GK+ ELALGY+GGA A + M +      
Sbjct: 488 FRGSGRIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGADK---- 543

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                    M  + PE A           ++   WR     + +
Sbjct: 544 -------------------------MGLSDPEIA-----------QIVSGWRNSSPNIVK 567

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNN 576
           LW ++ +A ++ I + + I   K +   L++ +K  N L + LPSGR L Y   + V N 
Sbjct: 568 LWRDVERAAKEAILSDRII---KLKQGGLIF-RKTSNILQIKLPSGRLLSYPLAKIVDNK 623

Query: 577 RSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             Y+  N TTRQ     TYGGKL ENIVQA++RD L E ++   K GY+I   VHDEI+ 
Sbjct: 624 ICYMSQNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIA 683

Query: 635 ETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P TDE   ++  + ++  +  ++A  LPLK EGY +  Y K
Sbjct: 684 EVP-TDESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725


>gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL]
 gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL]
          Length = 650

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 234/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T GL  +
Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT-GL-EN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N   
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV +                                         WR  +  +   W  
Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577
             +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N     
Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 610 EIPRGSN-GLKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649


>gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 653

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 235/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGVR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
 gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
          Length = 653

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 235/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
          Length = 653

 Score =  310 bits (793), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 235/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11]
          Length = 650

 Score =  310 bits (793), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 236/701 (33%), Positives = 335/701 (47%), Gaps = 85/701 (12%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCV---HDPVMP--QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D     ++PV    +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QSQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMTIANK 182

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T GL  +
Sbjct: 183 IKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N   
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV +                                         WR  +  +   W  
Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577
             +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N     
Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     + + IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEVIV 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224]
 gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224]
          Length = 653

 Score =  310 bits (793), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT++ +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
 gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
          Length = 650

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 234/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T GL  +
Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT-GL-EN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N   
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV +                                         WR  +  +   W  
Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577
             +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N     
Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 650

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 234/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T GL  +
Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT-GL-EN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
            +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N   
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV +                                         WR  +  +   W  
Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577
             +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N     
Sbjct: 496 CQEAAINTVKSRKTHHTHGVR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ 
Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 653

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AE+  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
 gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
          Length = 653

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   + EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +R++LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
 gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
          Length = 655

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 243/713 (34%), Positives = 336/713 (47%), Gaps = 97/713 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TLF D E+ S   L K G+  YAE  D  ++LF +  D  P+E+ D  +   +P  + 
Sbjct: 1   MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
            AL +  V   AHN+ FER  L A      P           +W CT++ +   GLP +L
Sbjct: 61  AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNHRE-AWRLFGEYCKGDV 165
            AV   LKL  QK   GK+LI +FC   T   L     RN P+     W  F +Y + DV
Sbjct: 121 DAVATVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  RL   P+   E + + LDQ IND G  +D  L      + +  R       +
Sbjct: 181 EVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLARAQ 240

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT GL + +  ++ LK WL    G  L+ L +      L +    T    +V   R   
Sbjct: 241 TLT-GLENPNSPIQ-LKQWL-ASRGCVLDSLAKAEVDAALDTA---TGTVKEVLGLRGDL 294

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +     SDGR RG +QF GA RTGR++G +   QNLPR      +LDQ  
Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPR--NYLPDLDQAR 352

Query: 344 THLPTSIT--------SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           T + T           S PD L   S  +R+  I S G + +VAD + IEARV+AW+AGE
Sbjct: 353 TLVRTGNLEALELLHESVPDTL---SQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGE 409

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMA 452
              L+AF  G+DLY  T +R F V P +   V  + R  GK+  LA G+ G   A ++M 
Sbjct: 410 TTTLQAFREGKDLYCETASRMFGV-PVEKHGVNGELRQKGKLAVLACGFGGSTGALERMG 468

Query: 453 S-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           + T GL                                 EH ++ +           AWR
Sbjct: 469 ALTMGL--------------------------------AEHELKPIV---------DAWR 487

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  +  LW  + +A    I + ++I  R  R         +   L + LPSGR L Y 
Sbjct: 488 AANPHIVALWAGVEEAAIAAIASRQSIRLRNLR------FSVEAGILFIELPSGRRLAYV 541

Query: 572 D--VGNNR-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              +G NR           TT R+  +  TYGGKLTENIVQA++RD+L  GM    KAG+
Sbjct: 542 KPRLGENRWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGH 601

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV+ VHDEIV + P+   F A+    LM++ P+WA+GLPL A+GYE   YRK
Sbjct: 602 QIVMHVHDEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
 gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
          Length = 653

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WA+GL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652


>gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
 gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
          Length = 653

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     Y+K  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYIK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 653

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AE+  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 653

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   + EG +L V+D + IEARV+AW A E+W+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 180/448 (40%), Positives = 257/448 (57%), Gaps = 15/448 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R +AS ++  K   L++ 
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRQQASTTSTSKYKALMKG 303

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 363

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF      TG DLY 
Sbjct: 364 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 423

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELA 438
             YA+++ +   +VTKDQR IGKV+ELA
Sbjct: 424 LAYAKAYGIEVERVTKDQRQIGKVLELA 451



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 17/244 (6%)

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI-EDLF 498
           GY GG  AF   A    L+L+  A+    N   +   +A+++     +    + + E +F
Sbjct: 740 GYGGGVSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVF 799

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK--KDKN 556
           I  AC+ +K+ WR+ H    + W EL    E+T+   +  IA  ++ +   Y+K  +D  
Sbjct: 800 I--ACDSLKRLWRRAHPATCDFWYEL----ERTV---RTAIATPQKTLYCGYLKIRRDGA 850

Query: 557 NLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
            L + LPSGR++ Y        N +Y+  N+ +R+  R  TYGGKL EN+ QA +RD+LA
Sbjct: 851 WLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLA 910

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
             M     AGY IVLTVHDEI+ E PD+ +++A  +  L+ + P WA  +PL A G+ES 
Sbjct: 911 GNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESY 970

Query: 672 RYRK 675
           RYRK
Sbjct: 971 RYRK 974


>gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
 gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
          Length = 644

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 236/698 (33%), Positives = 329/698 (47%), Gaps = 83/698 (11%)

Query: 4   LFIDFETRS--PIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
           L ID ET S  PI   K G  +Y +D    ++LFA+ FDD PVE+ D   DP +P+ + +
Sbjct: 3   LSIDVETYSDCPI---KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMTKDP-LPERVVD 58

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           AL N ++T  A N+ FE   LK  F  D     W CT VLA    LP++L  V +AL+L 
Sbjct: 59  ALYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLG 117

Query: 120 SQKMEEGKELIARFC--KGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE 176
             K   GK LI  F   +  T      RN P +  E W  + EY + DV V R I KRL 
Sbjct: 118 EAKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRLL 177

Query: 177 PLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            L   + E E W LDQ IN RG  VD+ L        D E  +   E   +  GL + + 
Sbjct: 178 SLKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACND-EIVEEATESSKILTGLENPNS 236

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
            ++ LK WL    G  LE + +     +L+ +  +     +V  NR     S++ K   +
Sbjct: 237 TMQ-LKEWLTARLGYDLETMRKDDVSNLLAQD--IPSDVRKVLQNRQVLGNSSIKKYLAM 293

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
             A+ SDGR+ G LQF GA R+GRW+G V   QNLPR     E+LD     L +      
Sbjct: 294 KNAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPR--NYLEDLDTARDVLKSRDVEML 351

Query: 355 D-----PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           D     P  +I   +R+ ++A +G + +VAD + IEARV+AW+A E+W+   F  G D+Y
Sbjct: 352 DLLYGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIY 411

Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + +  F+V   +  V    R  GKV ELALGY GG  A + M S   +          
Sbjct: 412 CASASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKGEI---------- 461

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                 PE  +  +          +AWRQ   R+++ W +   A
Sbjct: 462 ----------------------PEKELPGII---------EAWRQASPRITKFWKDADSA 490

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNR-------- 577
            +Q +  G+ +    R     +   K K  L + LPSGR L Y    +G N+        
Sbjct: 491 AKQVVRTGEPV----RIIQGNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEY 546

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             ++       R  TYGGKL ENIVQAV+RD LA  M+  +KAGY IV  +HDE+V E P
Sbjct: 547 DGMDQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAP 606

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                +   +  +M     W +GL L A G+E+  Y K
Sbjct: 607 -IGVGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643


>gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31]
 gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31]
          Length = 656

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 234/718 (32%), Positives = 342/718 (47%), Gaps = 106/718 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G  KYA  +D  ++LFA+  D   V++ D      +P  + 
Sbjct: 1   MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L++      A+N+ FE   L     ++ P+ +W CT+V     G  + L A+G A+ L
Sbjct: 61  DLLKDETCIKYAYNAVFEWWCLNMA-GIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119

Query: 119 --SSQKMEEGKELIARFC------KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
               +K+  G  LI  FC      K   +     RN P+H  E W LF EYC  DV    
Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRT---RNLPHHAPEKWELFKEYCIQDVVTEM 176

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           EI +RL   P+  +E +LW LD  +N  G  VD  L +    I  + R  L +E   +T 
Sbjct: 177 EIGRRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDITK 236

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E G  +E+L + T  +++ +      +A +V   R   S+++
Sbjct: 237 --LDNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDD--GKAKRVLEIRQELSKTS 291

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340
           V K   + EAM  D R+RG LQF GA+RTGR++G +   QNLPR     E LD       
Sbjct: 292 VKKYKAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPR--NYIETLDVARDVIK 349

Query: 341 ----QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               +++  L  +I   PD L   S  +R+  I SEG   VV+D + IEARV+AW+AGE+
Sbjct: 350 KGDGELLEMLYGNI---PDTL---SQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEE 403

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKM 451
           W+++ F+T   +Y  + ++ F V    + K +     RA GKV ELALGYQG   A   M
Sbjct: 404 WRMEVFKTHGKIYEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAM 463

Query: 452 -ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            A+  GL               EE +D                            +   W
Sbjct: 464 GAADMGLT-------------DEEMKD----------------------------IVDRW 482

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAII---ARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           R+   R+ ELW  L  A  + +E G+  I    +  ++   +Y    ++   + LPSGR 
Sbjct: 483 RKSSKRIVELWYALENAAVEVLETGEPQIVKCVKLAKEYDFIY---GQDFFTIELPSGRK 539

Query: 568 LVY-------RDVGNNRSY---LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
           L Y          G  + +   +N TT++     TYGGKLTENIVQA++RD LAE ++  
Sbjct: 540 LFYPKPFLKENQFGQMQMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRV 599

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              G+ IV  VHDEI+ + P + E    +    MT   SWAKGL L A G+    Y K
Sbjct: 600 KAKGWPIVFHVHDEIILDVPKSVELEEVI--KTMTEEISWAKGLILNAAGFTGSYYMK 655


>gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358]
          Length = 653

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 235/702 (33%), Positives = 336/702 (47%), Gaps = 84/702 (11%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S +DL  CG+ +YA      + LF++ F D PV   D     V+P  +  AL
Sbjct: 5   LHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKVLRAL 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLD---IPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            +     VAHN+ FER  +   + LD   +    W CT+V     GLP +L  +G+AL L
Sbjct: 65  RDPKRIKVAHNAQFERVCI--GYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKALGL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK +EGK LI  F   CK         +N P H  E W  +G+Y + DV V   I  +
Sbjct: 123 DVQKDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETGISDK 182

Query: 175 LEP---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           L     L + E   +  DQ IND G  VDV       ++ D  + +   +L  LT   V 
Sbjct: 183 LAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG--VE 240

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVL 289
           S   +++LK W   + G  +E L +  C+  L+  +  +  P+  ++      A  +AV 
Sbjct: 241 SVTKVQQLKAWAAAQ-GYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGGAAVA 299

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD---QIITHL 346
           K + ++  +  DG ++G L+F GA  T RW+G     QNLPR     ++L+   QI+   
Sbjct: 300 KYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQIVAKG 359

Query: 347 PT-SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            T  +    +P+ +I+  VR+ +      +  V+D + IEARV+AW AGE W LKAFE G
Sbjct: 360 KTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKAFEDG 419

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED+YV T ++ ++V   +  +  R  GK   LALGYQGGA A   M +            
Sbjct: 420 EDIYVATASKMYHVT-GEEAEAMRQKGKQATLALGYQGGANALIVMGA------------ 466

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                              ++   PE  + +L          + WR+ +  +  LW+ + 
Sbjct: 467 -------------------LRAGIPEEELPELV---------QLWRKANPNIVNLWHTVD 498

Query: 526 QAFEQTIENGKA---IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSY 579
           +A    I NG A   ++A  +    ++  K D++ L + LPSGR L Y D     N  SY
Sbjct: 499 KAARMAINNGGAKRYVLADGKL---VISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKISY 555

Query: 580 LNTTTRQLTREY--TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE---IVC 634
           L       +R Y  TYGGKLTEN+VQA SRD+L   +M    AG   V  VHDE   IV 
Sbjct: 556 LKGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIVP 615

Query: 635 ETPDTDEFNASMLYHLMTS-NPSWAKGLPLKAEGYESKRYRK 675
           E    +E N     +LMTS  P WA GLPL +EG   K YRK
Sbjct: 616 EGTKIEEIN-----NLMTSPAPEWADGLPLDSEGDVIKYYRK 652


>gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  304 bits (779), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 244/711 (34%), Positives = 328/711 (46%), Gaps = 95/711 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LF+D ET SP++LTK G+  YAE  D  V+LF +  D +PV++ D      +P  + 
Sbjct: 1   MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108
           EAL +  VT  A N+ FER  L A      P            +W CT+V +   GLP +
Sbjct: 61  EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKP-NHREAWRLFGEYCKGD 164
           L+ V   L L  +K   GK+LI RFC       L     RN P +  + W  F  Y + D
Sbjct: 121 LEQVATVLDLPVRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNRRD 180

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I  RL   P+   E   + LDQ IND G  +D  L     Q     R       
Sbjct: 181 VEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLARA 240

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT GL + +  ++ LK WL    G  L+ LT+      L +    T +  +V   R  
Sbjct: 241 QELT-GLENPNSPIQ-LKDWLTAH-GTPLQSLTKDEVAAALDTA---TGEVREVLQLRGE 294

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH--EELD 340
            ++S+V K  T+      DGR RG LQF GA RTGR++G +   QNLPR       E  D
Sbjct: 295 LAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEARD 354

Query: 341 QIITHLPTSI----TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            + T    ++     S PD L   S  +R+  + ++G + VVAD + IEARV+AW+AGE 
Sbjct: 355 LVRTGEFEAVELLYDSVPDTL---SQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEA 411

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             L+AF  G+DLY  T +R F V   +     + R  GK+  LA GYQGG  A + M + 
Sbjct: 412 TTLQAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGAL 471

Query: 455 -TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             GL  +    LV                                          AWR  
Sbjct: 472 RMGLAESELQPLV-----------------------------------------DAWRAA 490

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--R 571
           +  V +LW +++ A    IE   AI  R+   V  +    +   + + LPSGR L Y   
Sbjct: 491 NPNVVQLWADINAA---AIE---AISTRQPTGVGALTFTVESGIMFVRLPSGRRLAYVKP 544

Query: 572 DVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
            +G NR      T       R+  +  TYGGKLTENIVQAV+RD+L  GM    +AGY I
Sbjct: 545 KLGENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRI 604

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V+ VHDEIV ET          +  LM + P WA GLPL A+GY    Y K
Sbjct: 605 VMHVHDEIVVETATA---TVDEICELMATAPDWAAGLPLAADGYACDFYMK 652


>gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 649

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 230/716 (32%), Positives = 337/716 (47%), Gaps = 109/716 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L +D ET SP +L   G+ +YAED    ++LF +  D  P ++ D      +P  + 
Sbjct: 1   MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           +AL +  VT  A N+ FER  + A      P            W CT+V A S GLP +L
Sbjct: 61  QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
               +AL+L  +K   G++LI RF   G+    +   + P     W+ +  Y + DV V 
Sbjct: 121 DGAAKALRLPIEKDPAGQKLIRRFSIPGKDGIRVLPSDDP---VGWQQYISYNRRDVDVE 177

Query: 169 REIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            ++  RL   P+   E E ++LDQ IND G  +D  LA    ++    R       + LT
Sbjct: 178 VQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQLT 237

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            GL + +  ++ LK WL    G  LE LT+T  +  L +   +T    +V   R   SRS
Sbjct: 238 -GLENPNSPIQ-LKDWLAAH-GCELESLTKTEVEAALET---VTGDVAEVLRLRQDLSRS 291

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------PSRS---- 335
           +V K   ++    SD R RG +Q++GA RTGR++G +   QNLPR        +RS    
Sbjct: 292 SVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNA 351

Query: 336 --HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              + L+ + + LP ++          S  +R+  I S+  + +VAD + IEARVLAW+A
Sbjct: 352 GNSDALELLYSPLPDTL----------SQLIRTAFIPSKDHRFIVADFSAIEARVLAWLA 401

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQK 450
           GE+  L+AF  G+DLY  T +R F V P +      + R  GK+  LA GY G   A + 
Sbjct: 402 GEEGTLQAFREGKDLYCQTASRMFGV-PVEKHGANSELRQKGKIAVLACGYGGSVGALKA 460

Query: 451 MAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           M +   GL+ +    LV                                          A
Sbjct: 461 MGALRMGLDESELKPLV-----------------------------------------DA 479

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           WR  +  V + W+++ QA   T+E       R    V  +++      L + LPS R L 
Sbjct: 480 WRDANPMVVQFWHDIEQAAITTVET------RTPTQVGRIHLSYRSGCLFIALPSRRELC 533

Query: 570 Y--RDVGNNR--------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           Y    +G NR          ++ TTR+     TYGGKLTEN+VQA +RD+L   M +   
Sbjct: 534 YPRPRLGENRFGMTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDA 593

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           AG+ IV+ +HDEIV + P TD  +   +  LMT  P+WA GLPL A+GYE   Y K
Sbjct: 594 AGHRIVMHIHDEIVVDEP-TDGASVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648


>gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           MR1]
          Length = 631

 Score =  300 bits (767), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 226/668 (33%), Positives = 319/668 (47%), Gaps = 84/668 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL  +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607

Query: 630 DEIVCETP 637
           DE++ E P
Sbjct: 608 DEVIVEIP 615


>gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
          Length = 645

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 225/715 (31%), Positives = 343/715 (47%), Gaps = 114/715 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL+KCG+ KYA      V+LF +  D   V + D      +P+ + 
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +T VT  A N+ FER  L       +    W CT+V + + GLP +L++ G AL L
Sbjct: 64  SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK+ EGK+LI  FC   +         RN+P H  E W  F  Y   DV    +I KR
Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVETEMQIQKR 183

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+     E ++LDQ INDRG  VD+ L      +    R +L   L+ LT GL  +
Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQELT-GL-DN 241

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLKL 291
              ++++K WL  + GL     T+T  ++V++   +  P+ ++ V + R + ++S+V K 
Sbjct: 242 PNSVQQMKQWL-ADHGLE----TDTLGKKVVAELVRSAPEPLKTVLSLRQQLAKSSVKKY 296

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS-------------HEE 338
             +  A+ +DGR  G  QF GA+RTGR+SG +   QNLP+   S             +E 
Sbjct: 297 AAMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMRGGNYEA 356

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           +  +   +P ++          S  +R+  +  +G+K +VAD + IEARV+AW AGE+W+
Sbjct: 357 ISMLYEDIPDTL----------SQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWR 406

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
           LK FE G+D+Y  + ++ F+V   +  V    R  GK+ ELALGY G   A + M +   
Sbjct: 407 LKVFEDGDDIYSASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGA--- 463

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK---KAWRQK 513
                                                   L +G A E ++    AWR  
Sbjct: 464 ----------------------------------------LEMGLAEEELQPLVDAWRTS 483

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL----VYMKKDKNNLILMLPSGRSLV 569
           +  +++ W ++ +A ++ +          ++ VP+    ++       L + LPSGR L 
Sbjct: 484 NPMITQFWWDVDRAVKECV----------KKRVPMESHGLHFDYRSAMLFITLPSGRRLA 533

Query: 570 YRD--VGNNR------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           Y    +G N+      +Y+  +  ++  R  +YG K  ENIVQ  +RDIL   M      
Sbjct: 534 YVKPRIGENQFGRESVTYMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMRTLRNC 593

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              IV  VHDEI+ E       + S +   M   PSWAKGL L+A+GYE + Y+K
Sbjct: 594 A--IVAHVHDEIIIEA--DRRMSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644


>gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
 gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
          Length = 644

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 225/700 (32%), Positives = 340/700 (48%), Gaps = 82/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL K G+ +YAE  D  ++LF +  D  PV++ D      +P+ ++
Sbjct: 1   MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +A+ + +VT  A N+ FER  L   F + +    W CT+V +   GLP +L+        
Sbjct: 61  QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTGA 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             +K+ +GKELI  F   CK         RN P H  E W  F  Y   DV V   I ++
Sbjct: 121 DKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQEK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L+  P+  +E   + LDQ INDRG  +D+ L     Q  +  R +L   L+ LT   + +
Sbjct: 181 LQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKL 291
              + ++K+WL  E GL  + L + + + +L    K  P+ + +V   R   ++S+V K 
Sbjct: 239 PNSVVQMKSWLS-EKGLETDSLDKASVKALL----KEAPEHLSEVLELRQLLAKSSVKKY 293

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPT 348
             +  A+ +DGR RG LQF GA+RTGR++G +   QNLP+   S  E  + +    H   
Sbjct: 294 TAMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDA 353

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             I  D  P  ++S+ +R+  +  +G K +VAD + IEARV+AW+AGE W+ + F T   
Sbjct: 354 LEILYDSIP-GVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + ++ F V   +VTK    R  GK+ ELALGY G   A + M +   GL       
Sbjct: 413 IYEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEELKP 472

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           LV                                          AWR  +  +  LW ++
Sbjct: 473 LV-----------------------------------------YAWRNANPNIVRLWWDV 491

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR----- 577
            +A ++      A+  R R +   +  +     L++ LPSGR L Y    +G N      
Sbjct: 492 DRAVKE------AVTERCRTETHRIRFEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEA 545

Query: 578 -SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            +Y     T++  R  +YG K  ENIVQA+SRD+L   M N  ++G +IV+ VHDE+V E
Sbjct: 546 VTYEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLE 605

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P   E     +  LM   P WA GL L+A+G+E   Y+K
Sbjct: 606 VP--LEICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643


>gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 222/703 (31%), Positives = 339/703 (48%), Gaps = 88/703 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L+N ++   A N+ FER  L       +    W C+ V + + GLP +L+ +G  L L
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT GL + 
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT-GLANP 239

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  L+ LK WL  + G+    L++ +  ++L +    T    QV   R   S+S+V K  
Sbjct: 240 NSPLQ-LKDWL-QQQGIKTNSLSKASVAQLLQTT---TGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH-----L 346
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    EE  +++       L
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   E
Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTFA 463
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M +T  GL  +   
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELP 471

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV+                                          WR     + + W +
Sbjct: 472 PLVQM-----------------------------------------WRNASPHIVQFWWD 490

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577
           + +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G NR    
Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPQPKIGINRFGSE 544

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             +++   T ++  R  TYG KL ENIVQA SRD+LAE M      G  +V+ +HDE V 
Sbjct: 545 SITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVI 604

Query: 635 ETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + P    FN S+  +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 605 DAP----FNRSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643


>gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 216/720 (30%), Positives = 338/720 (46%), Gaps = 117/720 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S ++L K G+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
            AL +  V   A N+ FER  L     +    +     W CT++ A + GLP +L+ VG 
Sbjct: 61  NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHR-EAWRLFGEYCKGD 164
            L    QK+ +GK LI  FC          G T      RN P+H  E W++F  Y K D
Sbjct: 121 VLGFKKQKLSQGKNLIKYFCIPCSPTKSNGGRT------RNLPHHDIEKWKMFTFYNKRD 174

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLD 219
           V     I  +L   P+S  E + ++LDQ IND G  +D   V  A + ++    E  K  
Sbjct: 175 VETEMAIQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKA 234

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +EL  L      +     +LK WL L+ G+  + L++     +L  +     +A+ +   
Sbjct: 235 KELTGL-----ENPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQDSDGEIHEALSI--- 285

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------- 331
           R + ++S+V K  ++   + SD R RG +QF GA+RTGR+SG +   QNLP+        
Sbjct: 286 RQQLAKSSVKKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQ 345

Query: 332 -----PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
                 S +   LD +   +P+          ++S+ +R+  I   G + +VAD + IEA
Sbjct: 346 ARSLVKSGNFTALDLLYDSIPS----------VLSELIRTAFIPRYGSRFIVADFSAIEA 395

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGG 444
           RV+AW+AGE+W++  F  G D+Y  + ++ FNV   +  +    R  GK+ ELALGY G 
Sbjct: 396 RVIAWLAGERWRIDVFAGGGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGS 455

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
             A + M                                         AI+   +    +
Sbjct: 456 VGALKAMG----------------------------------------AIQMGLVEDELK 475

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +  AWR  +  ++ LW  + +A +  ++  + I      ++  + +      L + LPS
Sbjct: 476 PIVDAWRNSNPNITSLWWRIDRAVKTVVKTKQPI------EIYGIGIFYQSGILFIKLPS 529

Query: 565 GRSLVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
           GR L Y    +G NR      +Y     T++  R  +YG K  ENIVQA+SRDILAE M+
Sbjct: 530 GRRLAYVKPLIGENRFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAML 589

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 + IV+ VHDE+V E P+    +   +  +M+  P+WAKGL L A+GYE + Y+K
Sbjct: 590 KLATHEFQIVMHVHDEVVIEAPNKVS-SVEEICRIMSETPAWAKGLILNADGYECEFYKK 648


>gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916]
 gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916]
          Length = 653

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 235/707 (33%), Positives = 345/707 (48%), Gaps = 87/707 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET   +D+   G  KY E     ++L A+ +DD PV++ D ++   +P+VL+
Sbjct: 1   MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60

Query: 59  EAL--ENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +    + V   A N+ FER  +KA F  L      W CT+V A + GLPS+L  VG+A
Sbjct: 61  FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120

Query: 116 LKL--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTR 169
           LK     QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V R
Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180

Query: 170 EIFKRLEPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           EI   L    +  KE+ELW LDQ INDRG  VD+ L     +  +  + +L +E  +LT 
Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL ++     +LK W+    G  +  LT+ +   ++  +K    +  ++   R   ++++
Sbjct: 240 GL-NNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKNVK--KILELRQLMAKTS 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH- 345
           + K  T++ A   D R+RG LQF GA+RTGRW+G +   QNLP+      EE   ++ + 
Sbjct: 297 IKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNG 356

Query: 346 ----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +     S PD L   S  +R+  I ++G + +VAD + IEARV+A++A EQW+L  
Sbjct: 357 DFETIEFLFDSIPDTL---SQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDV 413

Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F+ G D+Y  + ++ F V   +  +    RA GK+ ELALGY G   A +          
Sbjct: 414 FKEGGDIYCASASKMFKVPVEKHGINGHLRAKGKIAELALGYGGAGGAIRAFD------- 466

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                  KT S P+                     EDL       ++   WR+    +++
Sbjct: 467 -------KTGSIPD---------------------EDL------PKLVSDWRKASPHITQ 492

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--------- 570
            W  + +A ++ I     +       +  +Y   D   L + LPSGR L Y         
Sbjct: 493 FWWNVDKAAKKAITEKTTVAL--HHGIKFIY---DPGVLFIQLPSGRKLSYLRPKIEEGK 547

Query: 571 --RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
              DV      +  T++Q  R  TYG KL ENIVQA +RD LAE M    K G+ +V+ V
Sbjct: 548 FGSDVITYEG-MEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHV 606

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDE+V +    +  +   +  +   +  WA GLPLKA+GYE   Y K
Sbjct: 607 HDELVLDV-SKEIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652


>gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6]
 gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6]
          Length = 645

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 348/709 (49%), Gaps = 99/709 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID E+ S  D++KCG  KY+E  D  ++LFA+  D  PVE+ D      +P+ + 
Sbjct: 1   MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           ++L +  V   A N+ FER  L     L+  +    W CT+V A + GLP +L  VG  L
Sbjct: 61  KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVT 166
            L  QK+ EGK+L+  FC         +G T      RN P H  + WR F  Y   DV 
Sbjct: 121 GLDKQKLSEGKDLVRYFCMPCNATKVNQGRT------RNLPRHSLDKWRDFVAYNIRDVE 174

Query: 167 VTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V   I ++L   P++ +  E ++LDQ INDRG  +D+ LA +   + +V + +++++L+ 
Sbjct: 175 VEVAIQQKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKK 234

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL--SSNKKLTPQAIQVFNNRMR 282
           LT GL + +  L+ +++WL  + GL +E L +   + ++  +++ KL     +V   R +
Sbjct: 235 LT-GLENPNSVLQ-MRSWLS-QHGLEVESLGKAAVKELIEQTNDDKLK----EVLLLRQQ 287

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH----EE 338
            ++S+V K   +      D R RG  QF GA+RTGR++G     QNLP+   S      E
Sbjct: 288 LAKSSVRKYQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARE 347

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           L +   +   ++  D  P +++S+ +R+  I   G K +V+D + IEARV+AW+AGE+W+
Sbjct: 348 LVRNGEYELLALLYDNVP-EVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWR 406

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TT 455
            + F  G D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A   M +   
Sbjct: 407 KEVFRNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMGALNM 466

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL  +    LV +                                         WR+ + 
Sbjct: 467 GLTEDELQPLVAS-----------------------------------------WRETNP 485

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--V 573
            +++LW ++  A +  +  G       + +   +  +     + + L SGR L Y    +
Sbjct: 486 AITKLWWDIDSAAKGCVSVG------AKTETHGITFEYKSGFMFIQLLSGRRLAYVKPRI 539

Query: 574 GNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
           G NR      +Y    TT++  R  +YG K  ENIVQA++RDIL   M N     Y IV 
Sbjct: 540 GQNRFGGAAVTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNLKD--YRIVG 597

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            VHDE++ E P   E     +  +M+  P+WAKGL L A+GYE   Y+K
Sbjct: 598 HVHDEVIIEVP--KEVTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644


>gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016]
 gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 644

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 217/701 (30%), Positives = 332/701 (47%), Gaps = 84/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M ++ ID ET S  +L KCG+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL +  VT  A N+ FER  L    NL   +    W C++V +   GLP +L+ VG  L
Sbjct: 61  NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P H  + W  F  Y   DV     I 
Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMSIQ 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+       ++LDQ INDRG  +D+A      ++ +  R KL   ++ +T   +
Sbjct: 181 QRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITN--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVL 289
            +   ++++K WL  + GL  + L +     +L    K  P+ +  V   R + ++S++ 
Sbjct: 239 ENPNSIQQMKEWL-ADNGLETDSLGKKAVAEML----KTAPEPLGTVLELRQQLAKSSIK 293

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT- 348
           K   +  A+ +DGR RG  QF GA+RTGR+SG +   QNLP+      E  + +      
Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353

Query: 349 ---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
              ++  D  P +++S+ +R+  +  EG K +VAD + IEARV+AW+AGE+W++  F+ G
Sbjct: 354 DALTLIYDSIP-EVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNG 412

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ FNV   +  V    R  GK+ ELALGY G   A + M +          
Sbjct: 413 GDIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMGAL--------- 463

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                      E  IE+       + +  AWRQ +  +++LW +
Sbjct: 464 ---------------------------EMGIEE----EELQPLVTAWRQSNPNITKLWWD 492

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GN 575
           +  A +  +   K  I  +   +  +Y       L ++LPSGR L Y           G 
Sbjct: 493 VDHAVKTCV---KQKIPTETHGIKFIY---QSGMLFIVLPSGRRLSYVKPRMGENVFGGE 546

Query: 576 NRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           + +Y     T++  R  +YG K  ENIVQA+SRDIL   M   T     IV  VHDEI+ 
Sbjct: 547 SVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIII 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E       + S +   M   P+WA GL L A+GYE + Y+K
Sbjct: 605 EA--DMRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643


>gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
 gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
          Length = 644

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 223/702 (31%), Positives = 343/702 (48%), Gaps = 86/702 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVH-DPVMPQVL 57
           M  L ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D    + + PQV+
Sbjct: 1   MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K AL++  +   A N+ FER  L    +  +    W C+ V + + GLP +L+ VG  L 
Sbjct: 61  K-ALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLG 119

Query: 118 LSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFK 173
           L  QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI +
Sbjct: 120 LPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQ 179

Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT GL +
Sbjct: 180 KLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKKLT-GLAN 238

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            +  L+ LK WL  + G+  + L++ +  ++L +    T    QV   R   S+S++ K 
Sbjct: 239 PNSPLQ-LKDWLH-QQGIKTDSLSKASVAQLLQTT---TGTVHQVLALRQLLSKSSIKKY 293

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH----- 345
             + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    EE  +++       
Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           L     S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   
Sbjct: 354 LAMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKN 410

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTF 462
           ED+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M +T  GL  +  
Sbjct: 411 EDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDEL 470

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV+                                          WR     + + W 
Sbjct: 471 PPLVQM-----------------------------------------WRNASPHIVQFWW 489

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR--- 577
           ++ +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G NR   
Sbjct: 490 DVDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPQPKIGINRFGS 543

Query: 578 ---SYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
              +++ N T ++  R  TYG KL ENIVQA SRD+LA  M     AG  +V+ +HDE V
Sbjct: 544 ESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAV 603

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + P TD  +   +  +MT  P WA GL L A G+    Y+K
Sbjct: 604 IDAP-TDR-SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
 gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
          Length = 645

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 229/717 (31%), Positives = 336/717 (46%), Gaps = 115/717 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L +D ET S +DL+KCG+ KY+E  D  ++LFA+  D  PVE+ D   D  +P  + 
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +L +  V   A N+ FER  L     LD  +    W CT+V   + GLP +L  VG  L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHREA-WRLFGEYCKGDVT 166
            L  QK+ EGK+LI  FC          G T      RN P+H    W  F  Y   DV 
Sbjct: 121 GLDKQKLTEGKDLIRYFCVPCNPTKVNGGRT------RNLPHHAPTKWSAFKTYNSRDVE 174

Query: 167 VTREIFKRLEP---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           V   I  +L     L S  +E W LDQ INDRG  +D        Q+ ++ +  L+Q+L+
Sbjct: 175 VEIAIQGKLSNFPVLDSVWKEYW-LDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQ 233

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT GL + +  L+ ++ WL L+ GL  E L +     +L   + +     QV   R + 
Sbjct: 234 ELT-GLENPNSVLQ-MRGWL-LDHGLETESLGKKAVAELLE--QPIDENLKQVLVLRQQL 288

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS-------- 335
           ++S+V K   +     SD R RG  QF GA+RTGR++G     QNLP+   S        
Sbjct: 289 AKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSL 348

Query: 336 -----HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
                 E L+ +  ++P           ++S+ +R+  +  EG K +V+D + IEARV+A
Sbjct: 349 VKQSNFEMLNILYGNVPN----------VLSELLRTAFVPREGMKFIVSDFSAIEARVIA 398

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAF 448
           W++GE+W+ + F+ G D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A 
Sbjct: 399 WLSGEKWRQEVFKNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 458

Query: 449 QKM-ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
           + M A   GL  +    LV +                                       
Sbjct: 459 KAMDALEMGLTEDELQPLVNS--------------------------------------- 479

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             WR  +  ++ELW  + +A +  ++       R+      +  +     L + L SGR 
Sbjct: 480 --WRDSNINITELWWAVDKAVKTCVKE------RRSTSTHGIKFEYKSGFLFIQLLSGRK 531

Query: 568 LVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           LVY    +G N+      +Y     T++  R  +YG K  ENIVQA++RDIL   M N  
Sbjct: 532 LVYVKPKIGENKFGGEAVTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLR 591

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           K  Y IV  VHDE++ E P   E     +  LM+  P WA+GL L A+GYE + Y+K
Sbjct: 592 K--YRIVGHVHDEVIIEVP--MESKVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644


>gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 644

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 219/710 (30%), Positives = 323/710 (45%), Gaps = 102/710 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID E+ S  DL K G+ +YAE  D  ++LFA+  D  PV + D      +P V++
Sbjct: 1   MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL +  V   A N+ FERT L    N  I    W C++V +   GLP +L+        
Sbjct: 61  QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTGA 120

Query: 119 SSQKMEEGKELIARFCKGETHECL---YDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             +K++EGK+LI  FCK      +    +RN P+H  E W  F  Y + DV   + I  +
Sbjct: 121 DKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQDK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   P+  +E   + LDQ INDRG  +D              R  L   L +LT   + +
Sbjct: 181 ISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRTLTK--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + ++K WL  E G+    L +     +L S +       +V   R + ++S+V K  
Sbjct: 239 PNSVMQMKDWL-AEQGVETGALDKAAVHELLKSAQG---DVAEVLTIRQKLAKSSVKKYT 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SRSHEEL 339
            + +    D R RG +QF GA+R+GR++G +   QNLP+              + + E L
Sbjct: 295 AMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEAL 354

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           D +   +P           ++S+ +R+  I  E  + +VAD + IEARV+AW+AGE W+ 
Sbjct: 355 DMLYPSVP----------DLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRN 404

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGL 457
           + F T   +Y  + ++ FNV   ++ K    R  GK+ ELALGY G   A + M +    
Sbjct: 405 EVFATHGKIYEASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMGA---- 460

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK---KAWRQKH 514
                                                  L +G   E +K   +AWRQ +
Sbjct: 461 ---------------------------------------LDMGVEEEELKPLVQAWRQAN 481

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---- 570
            ++ + W  + QA +      KA+  R       +        L++ LPSGR L Y    
Sbjct: 482 PKIVQFWWAVDQAAQ------KAVKQRTTTSTHGISFTYQSGLLLVGLPSGRHLSYVKPT 535

Query: 571 ---RDVGNNRSYLN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
               D G           T++  R  TYG KL ENIVQAVSRD+LA  M    + GY IV
Sbjct: 536 IVLNDFGREGLCFEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIV 595

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + VHDE+V E         S +  LMT  P W+ GL LKAEGY    Y+K
Sbjct: 596 MHVHDEVVVEA--KQHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643


>gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
 gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
          Length = 643

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 225/702 (32%), Positives = 335/702 (47%), Gaps = 96/702 (13%)

Query: 6   IDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +D ET S  D+ K G+ KYA  ED  ++  ++  +   V L D   +   P+ LK  + N
Sbjct: 5   LDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLTKEE-FPEFLKNHILN 62

Query: 64  TDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEALK 117
            D T  A N+ FER  L   F              W   +V A+  GLP++L+     L 
Sbjct: 63  ADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERCASYLG 122

Query: 118 LSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFK 173
           L  QK   GK LI  F   CK         RN P H  E W  +GEY   DV     I +
Sbjct: 123 LEEQKDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVVTQMAIAE 182

Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL+++T     
Sbjct: 183 KLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITGLANP 242

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +SR   +L  WL  E G     LT+   ++ L + +    + +++   +++ + S++ K 
Sbjct: 243 NSRA--QLLPWL-KEHGYSANGLTKADVEQELKTAEGELKRVLEL---KLQTAMSSLKKY 296

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             +  AM SDGR+ G LQF GASRTGRW+G V   QNL R     ++LD    ++     
Sbjct: 297 EAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDARGYVKKR-- 352

Query: 352 SDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            D D ++I+ D         VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F 
Sbjct: 353 -DIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFS 411

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           T   +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M +   LN+    
Sbjct: 412 THGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG--- 465

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                ++E   +  ++D             WR+ + ++ + W +
Sbjct: 466 ---------------------VKEEELQGLVDD-------------WRRANKKIVQFWKD 491

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNN 576
           + +A  + I++   I   K R       +  K  L + LPSGR+L Y        D G+ 
Sbjct: 492 VQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDK 545

Query: 577 RSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
             Y     +   T + TYGGKL ENIVQA +RDILAE ++    AG+ +V  VHDE + E
Sbjct: 546 IIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE 605

Query: 636 TPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 +E N      LM   P WA+GLPL +EGY +K Y K
Sbjct: 606 GSGLTIEEVN-----DLMAQAPDWAEGLPLNSEGYVTKYYMK 642


>gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
 gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
          Length = 657

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 224/717 (31%), Positives = 335/717 (46%), Gaps = 103/717 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LFID ET S  DL K G+ +Y+E  D  V+LF +  DD  V + D      +P  + 
Sbjct: 1   MRELFIDIETYSGTDLGKSGVYRYSEAPDFEVLLFGYCADDDEVRVIDLASGEALPTEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVL-----KACFNLD--------IPIHRWICTLVLARSNGL 105
           +AL +  V   AHN+ FER  L     +   NL         +    W CT+V +   GL
Sbjct: 61  DALTDETVVKWAHNAQFERVCLSRWLERQGINLKALNGNSNFLNPASWRCTMVWSAYLGL 120

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYC 161
           P +L+          QK+ EGKELI  F   CK         RN P H  + W  + EY 
Sbjct: 121 PLSLEGAALVTGAEKQKLTEGKELIRYFSSPCKPTKSNGGRTRNLPVHAPDKWEKYKEYN 180

Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             DV     I KRL   P+   E + + LDQ INDRG C+D+ L     +     RT L 
Sbjct: 181 ARDVETEMAIMKRLSKFPVPEDEWKYYILDQEINDRGICLDMDLIREAIRCDRRSRTVLT 240

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFN 278
           + +  +T   + +   + ++K W F E GL  E L +   + +L    K  P++  +V  
Sbjct: 241 EAVRDITD--LDNPNSVAQMKAW-FAENGLETETLGKAAVKELL----KTAPESFREVLA 293

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++S+V K   +  A+ SDGR+RG LQF GA+RTGR++G +   QNLP        
Sbjct: 294 LRQDLAKSSVKKYTAMENAVCSDGRVRGLLQFYGANRTGRFAGRLIQVQNLP-----QNH 348

Query: 339 LDQIITHLPTSITSDPDPLQIISDCV--------RSCVIASEGKKLVVADLAGIEARVLA 390
           L  ++       + D D L+I+ D V        R+  +   G K +VAD + IEARV+A
Sbjct: 349 LPDLVQARQLVKSGDFDALEILYDSVPGVLSELIRTAFVPMPGYKFIVADFSAIEARVIA 408

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAF 448
           W+AGEQW+ + F +   +Y  + ++ F V   ++TK    R  GK+ ELALGY G   A 
Sbjct: 409 WLAGEQWRNEVFASHGKIYEASASQMFRVPIEEITKGSPLRQKGKIAELALGYGGSVGAL 468

Query: 449 QKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
           + M +   GL  +    LV                                         
Sbjct: 469 KAMGALDMGLAEDELQPLV----------------------------------------- 487

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            AWR  +  ++ LW ++ +A +  +   +   A +  ++   Y       L + LPSGR 
Sbjct: 488 TAWRAANPNITRLWWDVDRAAKTAV---REKTAEQTHNILFEYR---SGFLFITLPSGRK 541

Query: 568 LVYRD--VGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           L Y    +  NR   ++ T       ++  R  +YG K  ENIVQA+SRDIL   M   +
Sbjct: 542 LAYVKPRIEANRFGSDSITYEGVGASKKWERIESYGPKFVENIVQAISRDILCYAMQRLS 601

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             G+ IV+ +HDE+V ET  + + +  ++  +M+  P WA+GL L A+G+E + Y+K
Sbjct: 602 SMGFSIVMHIHDEVVIET--SCDVSPEIVCRIMSETPPWAEGLFLCADGFECQFYKK 656


>gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 644

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 220/702 (31%), Positives = 339/702 (48%), Gaps = 86/702 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVH-DPVMPQVL 57
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D    + + PQV+
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K AL++  +   A N+ FER  L    +  +    W C+ V + + GLP +L+ VG  L 
Sbjct: 61  K-ALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLG 119

Query: 118 LSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFK 173
           L  QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI +
Sbjct: 120 LPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQ 179

Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT GL +
Sbjct: 180 KLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT-GLAN 238

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            +  L+ LK WL  +  +    L++ +  ++L +    T    QV   R   S+S++ K 
Sbjct: 239 PNSPLQ-LKDWL-QQQDIKTNSLSKASVAQLLQTT---TGTVHQVLALRQLLSKSSIKKY 293

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH----- 345
             + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    EE  +++       
Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           L     S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   
Sbjct: 354 LAMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKN 410

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTF 462
           ED+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M +T  GL  +  
Sbjct: 411 EDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDEL 470

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV+                                          WR     + + W 
Sbjct: 471 PPLVQM-----------------------------------------WRNASPHIVQFWW 489

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR--- 577
           ++ +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G NR   
Sbjct: 490 DVDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPQPKIGINRFGS 543

Query: 578 ---SYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
              +++ N T ++  R  TYG KL ENIVQA SRD+LAE M         +V+ +HDE V
Sbjct: 544 ESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAV 603

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + P     +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 604 IDAPSNRSLDT--MVQLMTEVPDWANGLILNAAGFVSDFYKK 643


>gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 645

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 228/706 (32%), Positives = 331/706 (46%), Gaps = 93/706 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M ++ ID ET S + L K G+ KYAE  D  ++LF +  D   V++ D  +   +P+ + 
Sbjct: 1   MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  VT  A N+ FER  L     + +  + W C+++ A + GLP +LK VG  L L
Sbjct: 61  AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             QK+EEGK+LI  F   CK         RN P +  E W+LF EY K DV     I  R
Sbjct: 121 DRQKLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQAR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTL------NQIVDVERTKLDQELESLT 226
           L+  P+   E E + +DQ INDRG  VD             ++ V +ER +   +LE+  
Sbjct: 181 LKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQNLTDLENPN 240

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             L        +L  WL    GL +E L ++   ++L   K  T    +V   R + S++
Sbjct: 241 SPL--------QLMDWLH-GKGLSVESLAKSEVTKML---KTATGDVREVLELRQQLSKT 288

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +V K   +     +D R RG  QF GA+RTGR++G +   QNLP+   +  +L ++ T +
Sbjct: 289 SVKKYMAMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLA--QLKEVRTLV 346

Query: 347 PTSITSDPDPL-----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   D L      ++S  +R+  +     + VVAD A IEARVLAW+AGEQW L  
Sbjct: 347 KDGDFELLDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDV 406

Query: 402 FETGEDLYVTTYARSFN--VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLN 458
           F    D+Y  T +R F+  V       D R  GK   L+ GY G   A   M +  +G+ 
Sbjct: 407 FREHGDIYCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMGAVESGMK 466

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 LV                             DL            WR  +  + 
Sbjct: 467 EEELQPLV-----------------------------DL------------WRASNPHIV 485

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
           + W ++ +A +  +   K  +  +   +  VY       L + LPSGR L Y    +G N
Sbjct: 486 QFWWDVDRAVKTCV---KRRVEVETHGIRCVY---KSGVLFIRLPSGRELAYAKPRIGEN 539

Query: 577 RSYLNTTTRQ---LTREY----TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R    + T +   +T+++    T+GGKL ENI Q  +RD+L   M      G+DIV+ VH
Sbjct: 540 RFGGESVTYEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVH 599

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DEIV E P     +   +  +M  NP WAKGLPLKA+GYE + YRK
Sbjct: 600 DEIVLEVP-YGVSSVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644


>gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
 gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
          Length = 645

 Score =  290 bits (743), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 223/713 (31%), Positives = 335/713 (46%), Gaps = 110/713 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL+KCG+ KYA      V+LF +  D   V + D      +P+   
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +T VT    N+  ER  L       +    W CT+V + + GLP +L++ G AL L
Sbjct: 64  SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK+ EGK+LI  FC   +         RN+P H  E W  F  Y   DV    +I KR
Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQKR 183

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+     E ++LDQ INDRG  VD+ L      I    R +L   +  LT   + +
Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRELTE--LEN 241

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKL 291
               +++K WL  + GL     T+T  ++ ++   K  P+ + +V + R + ++S+V K 
Sbjct: 242 PNSAQQMKQWL-ADHGLE----TDTLGKKAVAELVKTAPEPLREVLSLRQQLAKSSVKKY 296

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SRSHEE 338
             +  A+ +D R  G  QF GA+RTGR+SG +   QNLP+              S ++E 
Sbjct: 297 TAMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEA 356

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           L  +   +P ++          S  +R+  +  +G+K +VAD + IEARV+AW AGE+W+
Sbjct: 357 LSVLYEDIPDTL----------SQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWR 406

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
           LK FE G D+Y  + ++ F+V   +  V    R  GK+ ELALGY G   A + M +   
Sbjct: 407 LKVFEDGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGA--- 463

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK---KAWRQK 513
                                                   L +G A E ++    AWR  
Sbjct: 464 ----------------------------------------LEMGLAEEELQPLVDAWRGS 483

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM--LPSGRSLVYR 571
           +  +++ W ++ +A +  I        R+R       ++ D  + +L   LPSGR L Y 
Sbjct: 484 NPMITQFWWDVDRAVKDCI--------RQRIPTETHGLRFDYRSAMLFINLPSGRRLAYV 535

Query: 572 D--VGNNR------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              +G N+      +Y+  + T++  R  +YG K  ENIVQ  +RDIL   M   T    
Sbjct: 536 KPRIGENQFGGESVTYMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQ--TLKNC 593

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV  VHDEI+ E       + + +   M   P WAKGL L+A+GYE + Y+K
Sbjct: 594 SIVAHVHDEIIIEA--DRRMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644


>gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 662

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 227/725 (31%), Positives = 342/725 (47%), Gaps = 114/725 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S IDL KCG+ KYAE  +  ++LF +  D   V++ D      +PQ + 
Sbjct: 1   MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFN-----LDIPIHR----------------WICTL 97
           +AL + +VT  A N+ FER  L    +     LD P H                 W C++
Sbjct: 61  DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLD-PFHDNHPLSTECARFLNPEGWRCSM 119

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EA 153
           V A + GLP +LK VG+ LKL  QKM+EGK LI  F   C          RN P H  E 
Sbjct: 120 VWAATMGLPLSLKGVGQVLKLEDQKMDEGKALIKYFSVPCAPTKANGGRTRNMPFHDPEK 179

Query: 154 WRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F  Y K DV V   I +RL   P+     + + +DQ INDRG  +D+ L     ++ 
Sbjct: 180 WETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLVAKAIEMD 239

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              RT+L   ++ +T   + +   ++++K WL  + GL     T++  ++V++   K  P
Sbjct: 240 TRSRTELTTAMKDITE--LDNPNSVQQMKQWLS-DNGLE----TDSLGKKVVAELIKTAP 292

Query: 272 QAIQ-VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
             +Q V   R + ++S+V K  T+  A+  DGR RG   F GA+RTGRW+G +   QNLP
Sbjct: 293 SELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQLQNLP 352

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLA 382
           +       L+ +        + D D ++++        S  +R+  I  +G +L V+D +
Sbjct: 353 Q-----NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFS 407

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALG 440
            IEARV+AW AGE W+ K F  G D+Y  + ++ F+V   +  V    R  GK+ ELALG
Sbjct: 408 AIEARVIAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALG 467

Query: 441 YQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
           Y G   A + M +   GL+ +    LV                                 
Sbjct: 468 YGGSVGALKAMGAIEMGLSEDELPPLV--------------------------------- 494

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                    AWRQ +  + + W ++ +A  + +++     +       L +  +    L 
Sbjct: 495 --------DAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYG-----LTFSCR-SGMLF 540

Query: 560 LMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDIL 610
           + LPSGR+L Y    VG N+      +Y     T++  R  +YG K  ENIVQA SRDIL
Sbjct: 541 ITLPSGRNLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDIL 600

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
              M   T    +IV+ +HDE+V E       +  +L   M   P WA+GL L+A+GY +
Sbjct: 601 CYAM--KTLRNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRADGYTT 656

Query: 671 KRYRK 675
             Y+K
Sbjct: 657 PFYKK 661


>gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 647

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 218/700 (31%), Positives = 332/700 (47%), Gaps = 86/700 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           +L +D ET S ++L K G+ +YAE  D  ++LF +  D   V++ D      +P  +  A
Sbjct: 6   SLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEIINA 65

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           L +  VT  A N+ FER  L    NL   +    W C++V +   GLP +L+ VG  L L
Sbjct: 66  LMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVLGL 125

Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+ EGK+LI  FC             RN P H  + W  F  Y   DV     I +R
Sbjct: 126 EKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEMLIQQR 185

Query: 175 LEPLSSKEQELW---YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           L      E  +W   +LDQ INDRG  +D+       ++ +  R KL   ++ +T   + 
Sbjct: 186 LSKFQVPEN-IWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITN--LE 242

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLK 290
           +   ++++K WL  + GL     T++  ++V++   K  P+ +  V   R + ++S+V K
Sbjct: 243 NPNSVQQMKDWL-ADNGLE----TDSLGKKVVAEMLKTAPEPLGTVLELRQQLAKSSVKK 297

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A+ SDGR RG  QF GA+RTGR+SG +   QNLP+      E  + +       
Sbjct: 298 YTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 357

Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
             ++  D  P +++S+ +R+  I  EG K +VAD + IEARV+AW+AGE+W+L  F+ G 
Sbjct: 358 ALTLLYDSIP-EVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGG 416

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           D+Y  + ++ FNV   +  V    R  GK+ ELALGY G   A + M +           
Sbjct: 417 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMGAL---------- 466

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                     E  IE+       + +  AWRQ +  +++LW ++
Sbjct: 467 --------------------------EMGIEE----EELQPLVTAWRQSNPNITKLWWDV 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNT 582
            +A +  +   K         +  +Y       L ++LPSGR L Y    +G N     +
Sbjct: 497 DRAVKTCV---KQKTPTATHGIKFIY---QSGMLFIVLPSGRRLAYVKPRMGENMFGSES 550

Query: 583 T-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                   T++  R  +YG K  ENIVQA+SRDIL   M   T     IV  VHDEI+ E
Sbjct: 551 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIIIE 608

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  + S +   M   P+WA GL L A+GYE + Y+K
Sbjct: 609 ADMG--MSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646


>gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 221/701 (31%), Positives = 333/701 (47%), Gaps = 84/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L + G  +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L       +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +       +  Q  + LT GL + 
Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLT-GLANP 239

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  L+ LK WL  + G+  + L + +  ++L +    T    QV   R   S+S+V K  
Sbjct: 240 NSPLQ-LKNWLH-QQGVETDSLAKASVAQLLQTT---TGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQII-----THL 346
            + +AM  DG + G LQF GA+RTGRW+G +   QNLPR S    EE   ++     T L
Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+G    VAD + +EARV+AW++GE+W+  AF   E
Sbjct: 355 AMLYESVPD---VLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTFA 463
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M +T  GL  +   
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELP 471

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV+                                          WR     + + W +
Sbjct: 472 PLVQM-----------------------------------------WRNASPHIVQFWWD 490

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577
           + +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G NR    
Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPQPKIGINRFGSE 544

Query: 578 --SYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             +++ N T ++  R  TYG KL ENIVQA SRD+LA  M     AG  +V+ +HDE V 
Sbjct: 545 SITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVI 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + P TD  +   +  +MT  P WA GL L A G+    Y+K
Sbjct: 605 DAP-TDR-SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
          Length = 653

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 230/713 (32%), Positives = 321/713 (45%), Gaps = 99/713 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LFID ET SP++L   G+  YA+     ++LF +  D  PVE+ D  +   +P+ + 
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108
            AL +  V   A N+ FER  L +      P            +W CT+V +   GLP +
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY---DRNKP-NHREAWRLFGEYCKGD 164
           L  V   L L  +K   GK+LI +FC   T         RN P +  + W  F  Y + D
Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I  RL   PL + E + + LDQ +ND G  +D  L           R       
Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT GL + +  ++ LK WL      H   L   T   V ++    T Q  +V   R  
Sbjct: 241 QELT-GLENPNSPIQ-LKDWL----AAHGAPLQSLTKDEVAAALDTATGQVREVLLLRGE 294

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++S+V K   +      DGR RG LQF GA RTGR++G +   QNLPR       L  +
Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPR-----NYLPDL 349

Query: 343 ITHLPTSITSDPDPLQIISDCV--------RSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                   T D + ++++ D V        R+  I ++G + VVAD + IEARV+AW+AG
Sbjct: 350 AEARSLVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAG 409

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           E   L+AF  G+DLY  T +R F V   +     + R  GK+  LA GYQGG  A + M 
Sbjct: 410 ETTTLEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG 469

Query: 453 ST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           +   GL  +    LV                                          AWR
Sbjct: 470 ALRMGLAESELQPLV-----------------------------------------DAWR 488

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570
             +  V +LW +++ A  +TI        R+   V  +    +   + + LPSGR L Y 
Sbjct: 489 AANPSVVQLWADINAAAIETIST------RQPTSVGALTFTVESGIMFIRLPSGRRLAYV 542

Query: 571 -RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              +G NR           TT R+  +  TYGGKLTENIVQAV+RD+L   M    +AG+
Sbjct: 543 KPKLGENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGH 602

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV+ VHDEIV ET          +  LM++ P WA GLPL+A+GY    Y K
Sbjct: 603 RIVMHVHDEIVVETATA---TVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652


>gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 233/709 (32%), Positives = 319/709 (44%), Gaps = 91/709 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LFID ET SP++L   G+  YA+     ++LF +  D  PVE+ D  +   +P+ + 
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108
            AL +  V   A N+ FER  L +      P            +W CT+V +   GLP +
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY---DRNKP-NHREAWRLFGEYCKGD 164
           L  V   L L  +K   GK+LI +FC   T         RN P +  + W  F  Y + D
Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I  RL   PL + E + + LDQ +ND G  +D  L           R       
Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT GL + +  ++ LK WL      H   L   T   V ++    T Q  +V   R  
Sbjct: 241 QELT-GLENPNSPIQ-LKDWL----AAHGAPLQSLTKDEVAAALDTATGQVREVLLLRGE 294

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSH-EE 338
            ++S+V K   +      DGR RG LQF GA RTGR++G +   QNLPR   P  +    
Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           L +   +    +  D  P   +S  +R+  I ++G + VVAD + IEARV+AW+AGE   
Sbjct: 355 LVRTGNYDAVELLYDSVP-DTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATT 413

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-T 455
           L+AF  G+DLY  T +R F V   +     + R  GK+  LA GYQGG  A + M +   
Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRM 473

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL  +    LV                                          AWR  + 
Sbjct: 474 GLAESELQPLV-----------------------------------------DAWRAANP 492

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV 573
            V +LW +++ A    IE   AI  R    V  +    +   + + LPSGR L Y    +
Sbjct: 493 NVVQLWADINAA---AIE---AISTRLPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKL 546

Query: 574 GNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
           G NR           TT R+  +  TYGGKLTENIVQAV+RD+L  GM    +AG+ IV+
Sbjct: 547 GENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRIVM 606

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            VHDEIV ET          +  LM   P WA GLPL A+GY    Y K
Sbjct: 607 HVHDEIVVETATA---TVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652


>gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
 gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 224/719 (31%), Positives = 334/719 (46%), Gaps = 108/719 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ETRS ID+ K G  KYA+  D  ++LFA+ +++ PV++ D  +   +P  L 
Sbjct: 1   MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL + +V   A+N+ FE   L  C   + PI +W CT+      G  + L A G+A+ L
Sbjct: 61  QALADPNVIKHAYNAAFEWYCLN-CAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119

Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
               QK+  GK LI  FC   K          N+P H  + W LF EYC  DV   REI 
Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           KRL+  P+  +E+ LW +D  +N  G  VD  L      I  +   +L  E  SLT GL 
Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLT-GLQ 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVL 289
           + +   + L+ WL  + G   ++L + T   +L     + P  ++ +   R +  ++++ 
Sbjct: 239 NPNSAAQLLQ-WL-RDNGTEADNLQKATVAELLGG---INPNKVRRMLEIRQQLGKTSIK 293

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSH 336
           K   +  A     R+RG  Q+ GA+RTGRW+G +   QNLPR              ++++
Sbjct: 294 KYVAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNY 353

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           + +  +  ++P ++          S  +R+  I S G K VVAD + IEARV+AW+AGEQ
Sbjct: 354 DGVRILYGNVPDTL----------SQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQ 403

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKM 451
           W  + F T   +Y  T ++ F V   ++ K       R  GKV  LALGYQGG  A   M
Sbjct: 404 WVNEVFATHGKIYEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAM 463

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
            +                               +Q    E  + D+          + WR
Sbjct: 464 GA-------------------------------LQMGLTEEELPDIV---------QRWR 483

Query: 512 QKHSRVSELWNELHQAFEQTIENGK-----AIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           Q + R+  LW  +  A    +E  +      +I     D+  +Y    ++ L + LPSGR
Sbjct: 484 QANPRIKGLWYAIENAALAVMETAQPQGINGLIFALEGDI--IY---GQSFLTVRLPSGR 538

Query: 567 SLVYRD--VGNNR----SYLNTTTRQLTREY----TYGGKLTENIVQAVSRDILAEGMMN 616
            L Y    +  NR    +    T  Q TR++    TYGGK+ ENIVQA++RD LA  +  
Sbjct: 539 KLFYPKPFLKENRFEKMAVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLER 598

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               G  +V  VHDE++ + P   E     +  LM     WA GL LK  G+ES  Y K
Sbjct: 599 IASKGLQVVFHVHDEVIIDAP--METTVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655


>gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
 gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
          Length = 646

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 216/704 (30%), Positives = 330/704 (46%), Gaps = 88/704 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL K G+ +Y E  D  ++LF +  D   V++ D +    +P  + 
Sbjct: 1   MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
           +AL + DVT  A N+ FER  L     L    +     W CT+V +   GLP +L+  G 
Sbjct: 61  DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  F   CK         RN P H  + W  F  Y   DV     
Sbjct: 121 VLGLEKQKLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETEMA 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++L   P+       ++LDQ INDRG  +D+ L     ++ +  R+KL   +  LT  
Sbjct: 181 IQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELTE- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   + ++K WL  + GL  + L +     +L +  +   + +++   R   ++S+V
Sbjct: 240 -LENPNSVVQMKQWLS-DHGLETDTLGKKAVVELLKTASEPLGKVLEL---RQSLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   +   + +DGR RG  QF GA+RTGRW+G +   QNLP+      +L+Q  + + +
Sbjct: 295 KKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQ--NHMPDLEQARSLVRS 352

Query: 349 S------ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                  +  D  P +++S+ +R+  +  +G K +VAD + IEARV+AW+AGE+W+ + F
Sbjct: 353 GNFAALEMLYDSVP-EVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVF 411

Query: 403 ETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           E+G D+Y  + ++ F+V   +  V    R  GK+ ELALGY G   A + M         
Sbjct: 412 ESGGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMG-------- 463

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A+E        + +  AWR  + ++  L
Sbjct: 464 --------------------------------ALEMGLEEEELQPLVSAWRSSNPKIVRL 491

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRS 578
           W ++ +A        KA+  R   +   +          + LPSGR L Y    +G NR 
Sbjct: 492 WWDIDRAAM------KAVRERTTTETHGIRFSYQSGMFFITLPSGRRLAYVKPRIGQNRF 545

Query: 579 YLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
             +  T       ++  R  +YG KLTENIVQA SRDIL   M N       IV+ VHDE
Sbjct: 546 GSDCITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNLRHC--SIVMHVHDE 603

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           IV E       +   +   M   P WAKGL L+A+GYE+  Y+K
Sbjct: 604 IVIEA--DRRMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645


>gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 644

 Score =  283 bits (725), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 215/701 (30%), Positives = 329/701 (46%), Gaps = 84/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M ++ ID ET S  +L K G+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL +  VT  A N+ FER  L    NL   +    W C+++ +   GLP +L+ VG  L
Sbjct: 61  NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P H  + W  F  Y   DV     I 
Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMSIQ 180

Query: 173 KRLEPLSSKEQ--ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +R       E   E ++LDQ INDRG  +D+        + +  R KL   ++ +T   +
Sbjct: 181 QRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITN--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVL 289
            +   ++++K WL  + GL     T+T  ++ ++   K  P+ +  V   R + ++S+V 
Sbjct: 239 ENPNSVQQMKDWL-ADNGLE----TDTLGKKAVAEMLKTAPEPLGTVLELRQQLAKSSVK 293

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT- 348
           K   +  A+ +DGR RG  QF GA+RTGR+SG +   QNLP+      E  + +      
Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353

Query: 349 ---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
              ++  D  P +++S+ +R+  I  EG K +VAD + IEARV+AW+AGE+W++  F+ G
Sbjct: 354 DALTLLYDSIP-EVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNG 412

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ FNV   +  V    R  GK+ ELALGY G   A + M +          
Sbjct: 413 GDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGAL--------- 463

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                      E  IE+       + +  AWRQ +  +++LW +
Sbjct: 464 ---------------------------EMGIEE----EELQPLVTAWRQSNPNITKLWWD 492

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GN 575
           + +A +  +   K     +   +  +Y       L + LPSGR L Y           G 
Sbjct: 493 VDRAVKTCV---KQKTPTETHGIKFIY---QSGMLFIALPSGRRLAYVKPRMGENMFGGE 546

Query: 576 NRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           + +Y     T++  R  +YG K  ENIVQA+SRDIL   M   T     IV  VHDEI+ 
Sbjct: 547 SVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIII 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E       +A  +   M   P+WA GL L A+GYE + Y+K
Sbjct: 605 EADMGTSLSA--ICEQMAKMPTWANGLLLSADGYECQFYQK 643


>gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 228/737 (30%), Positives = 339/737 (45%), Gaps = 140/737 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+ KY E  D  ++LF +  D  PV++ D      +PQ + 
Sbjct: 1   MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVL-----------KACFNLD-------IPIHRWICTLVLA 100
            AL N +VT  A N+ FER  L            AC+++        +    W CT++ +
Sbjct: 61  AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK---------GETHECLYDRNKP-NH 150
              GLP +L+ VG  L L  QK+ EGKELI  FC+         G T      RN P N 
Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQKLTEGKELIKYFCQPCAPTKANSGRT------RNLPENA 174

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            + W  F  Y   DV V   I ++L   P+     E ++LDQ INDRG  +D+ L   + 
Sbjct: 175 PDKWASFKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDL---VR 231

Query: 209 QIVDVE---RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
           Q +D++   R +L   ++ LT   + +   ++++K WL  + GL+++ L +     +L  
Sbjct: 232 QAIDMDTRSRAELTAAMKKLT--ALDNPNSVQQMKQWLS-DNGLNVDSLGKKEVAEML-- 286

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K    +  QV   R + ++S+V K   + +A+ +DGR RG  QF GA+RTGRW+G +  
Sbjct: 287 -KTAPAELQQVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQ 345

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITS-------DPDPLQII--------SDCVRSCVIA 370
            QNLP+             HLP    +       D D ++++        S  +R+  + 
Sbjct: 346 MQNLPQ------------NHLPDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVP 393

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQ 428
             G K +V+D + IEARVLAW AGE W+ + FE G D+Y  + ++ F V   +  V    
Sbjct: 394 RPGYKFIVSDFSAIEARVLAWFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHL 453

Query: 429 RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           R  GK+ ELALGY G   A + M +   GL+      LV                     
Sbjct: 454 RQKGKIAELALGYGGSVGALKAMGALEMGLSEGELQPLV--------------------- 492

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                                AWR  +  + + W ++ +A         A+      ++ 
Sbjct: 493 --------------------TAWRNSNQNIVKFWWDIDRAAMN------AVKYHMDSEIC 526

Query: 548 LVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLT 598
            +        L + LPSGR L Y    +G N+      +Y     T++  R  TYG KL 
Sbjct: 527 GIKFSYKSGMLFITLPSGRRLSYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLV 586

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA SRDIL   M   +     I + +HDE+V E   +   N   +   M   P+WA
Sbjct: 587 ENIVQATSRDILCYAMRTLSHCF--ITMHIHDELVIEA--SLGVNLKSICEQMGRTPTWA 642

Query: 659 KGLPLKAEGYESKRYRK 675
            GL L+A+GYE+  Y+K
Sbjct: 643 NGLKLRADGYETMFYKK 659


>gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [butyrate-producing bacterium SM4/1]
          Length = 646

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 220/708 (31%), Positives = 322/708 (45%), Gaps = 96/708 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L K G+ +Y E  D  ++LFA+  D  PV+  D      +P  + 
Sbjct: 1   MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+  VT  A N+ FER  L           +    W C++V A   GLP +L+  G 
Sbjct: 61  CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120

Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN P H  + W  F +Y   DV     
Sbjct: 121 VLGLEKQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETEMS 180

Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  RL   P+     E ++LDQ INDRG  +D+ L     Q+    R++L Q ++ LT  
Sbjct: 181 IQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELTS- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSA 287
            + +   ++++K WL  + G+     T+T  ++ ++   K  PQ +Q V   R + ++S+
Sbjct: 240 -LDNPNSVQQMKQWL-ADNGVE----TDTLGKKAVAELLKTAPQQLQKVLTLRQQLAKSS 293

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K   +  A+ +DGR RG  QF GA+RTGRW+G +   QNLP        LD +     
Sbjct: 294 VKKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLP-----QNHLDDLTEARG 348

Query: 348 TSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  D L+++        S  +R+  +    +K +VAD + IEARV+AW+A E+W+ 
Sbjct: 349 LVRAGGFDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQ 408

Query: 400 KAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456
             F  G+D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A + M +   G
Sbjct: 409 DVFAEGKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMG 468

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+ +    LV                                          AWRQ + +
Sbjct: 469 LSEDELPALV-----------------------------------------SAWRQANPK 487

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574
           + + W  + +A         A+  +       +        L + LPSGRSL Y    +G
Sbjct: 488 IVQFWWAVDRAVMD------AVTRKTTTKTHGIIFSARNGMLFITLPSGRSLSYVKPKIG 541

Query: 575 NNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
            NR      +Y     T++  R  +YG K  ENIVQA SRDIL   M   T     IV+ 
Sbjct: 542 ENRFGGDCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAM--KTLRCCSIVMH 599

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +HDE+V E        A  +   M   P WA GL L+A+GYE+  Y+K
Sbjct: 600 IHDEVVIEADRRMSLQA--VCDQMGRTPPWANGLQLRADGYETDFYKK 645


>gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
 gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
          Length = 668

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 224/723 (30%), Positives = 322/723 (44%), Gaps = 112/723 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEA 60
           L ID ETRS +D++K G  +YA+  D  ++LFA+ +DD PVE+ D   D   P ++ +EA
Sbjct: 6   LSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEEA 65

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL-- 118
           L + DV   A+N+ FE   L        P+ +W CT+      G  + L A G+A+ L  
Sbjct: 66  LRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLPQ 124

Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GK LI  FC   K          N+P H  + W LF EYC+ DV    EI +R
Sbjct: 125 DKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEILRR 184

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+   E+ LW LD  +N  G  VD  L      + +V   KL  E   LT GL  +
Sbjct: 185 LNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELT-GL-DN 242

Query: 233 SRCLEKLKTWLFLETGLH------LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                +L  W+      H      L DL + T +  L     L     ++   R +  ++
Sbjct: 243 PNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLGKT 302

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PS 333
           +V K   +  A     R+RG  Q+ GA+RTGRW+G +   QNLPR              +
Sbjct: 303 SVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELVKA 362

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           ++++ L  +  ++P ++          S  +R+  I SEG K VVAD + IEAR +AW+A
Sbjct: 363 KNYDGLRILYGNVPDTL----------SQLIRTAFIPSEGHKFVVADFSAIEARAIAWLA 412

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAF 448
           GEQW  + F T   +Y  T A+ F V   ++TK       R  GKV  LALGYQG   A 
Sbjct: 413 GEQWVNEVFATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAAL 472

Query: 449 QKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             M +   GL  +    +V                                         
Sbjct: 473 IAMGALKMGLTEDELPDIVTR--------------------------------------- 493

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGK-----AIIARKRRDVPLVYMKKDKNNLILML 562
             WR  + R+  LW  +     + ++  +      +I     D  L+Y    ++ L + L
Sbjct: 494 --WRNANKRICGLWYAVENTALRVMQTAQPQGLNGLIFALEGD--LIY---GQSFLTVRL 546

Query: 563 PSGRSLVYRD--VGNNR--------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
           PSGR L Y    +  NR          +   TR+   + TYGGK+TENIVQA++RD LA 
Sbjct: 547 PSGRKLYYPKPFLQENRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAV 606

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
            +    + G   V  VHDE++ + P   E     +  LM     WA GL LK  G+ES  
Sbjct: 607 TLRRIAQKGLQTVFHVHDEVIIDAP--METTVDEICDLMAEPIPWAPGLILKGAGFESSY 664

Query: 673 YRK 675
           Y K
Sbjct: 665 YMK 667


>gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 650

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 221/718 (30%), Positives = 329/718 (45%), Gaps = 112/718 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L ID ETRS +D+ K G+ +YAE  D  ++LF +  D   V++ D  +   +PQ + 
Sbjct: 1   MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKAC----------FNLDIPI----------HRWICTLV 98
           +AL +  V   A N+ FER  L             F+ + P+          H W CT+V
Sbjct: 61  DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            +   GLP +L  VG  L L  QKM EGK LI  F     HE       P   + W LF 
Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQKMNEGKALIRYFSTPPFHE-------PTGAK-WDLFK 172

Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            Y + DV V   I KRL   P+     E + LDQ INDRG  +D+ L     QI    + 
Sbjct: 173 SYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVRTKE 232

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-Q 275
           KL   L++LT   + +   + ++K WL  E G+  E L + +   +L++     P  + +
Sbjct: 233 KLTDRLKTLTS--LENPNSVTQMKAWL-KEQGVETESLDKKSVTALLAN----VPDPLKE 285

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           V   R + ++S+V K   +   + SDGR RG  QF GA+RTGR+SG     QNLP+   +
Sbjct: 286 VLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLA 345

Query: 336 HEELDQIITH------LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
             E  + +        L     S PD   ++S  +R+  I+ EG+K +VAD + IEARVL
Sbjct: 346 DLEYARSLVRQGSFAALELLYESVPD---VLSQLIRTAFISKEGRKFIVADFSAIEARVL 402

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSF--NVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +W+A E+W++  F    D+Y  T  R F  NV         R  GK+ EL+ GY G   A
Sbjct: 403 SWLAKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVGA 462

Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            +   +  +G+       LV                                        
Sbjct: 463 LKAFGALESGMKEEELNPLV---------------------------------------- 482

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             AWR  +  + + W  + +A +  I+     +    R    +Y     + + + LP GR
Sbjct: 483 -DAWRAANPNIVDFWWAVDRATKDCIKERSTKVTHGIR---FIY---QGSMMFIELPCGR 535

Query: 567 SLVYRD--VGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
            L Y    +G N+      +Y+    +++  R  +YG KL EN+ QA+SRDIL   M   
Sbjct: 536 RLAYVKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQ-- 593

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           T    DIV  VHDE++ E    +  + S +   M   P WA GLPL+A+G+E + Y+K
Sbjct: 594 TLRTMDIVAHVHDELIIEC--DERVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649


>gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 658

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 220/696 (31%), Positives = 326/696 (46%), Gaps = 82/696 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           +L +D ET S ++L++CG+ +Y +D    ++L ++  DD  V   D      +P  +  A
Sbjct: 21  SLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVAA 80

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++  V   A+N+ FERT L A     +    W CT+V A + GLP +LK VG  L L+ 
Sbjct: 81  LDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLAH 140

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRL--EP 177
           QK+ EGK+LI  F           R++P +   AW LF +Y   DV V   I ++L   P
Sbjct: 141 QKLAEGKDLIKYFSLPTKTGI---RHQPSDDSAAWALFKQYNARDVEVETTIRRKLSHHP 197

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           +  +    + +DQ INDRG  +D  LA          R +     + LT GL + +  L+
Sbjct: 198 VPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELT-GLDNPASPLQ 256

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L++WL  E G  +  + +      L +      +A+++   R   S+S+V K   + +A
Sbjct: 257 -LQSWL-AEQGCKISSMAKEDVDSALDTATGSVREALEL---RQDLSKSSVAKYRKMADA 311

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH------LPTSIT 351
             +DGR  G LQF GASRTGRW+G +   QNLPR         + + H      L     
Sbjct: 312 TCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLYP 371

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           S PD L   S  +R+  I SE  + +VAD + IEARVLAW+AGE+  L AF  GEDLY  
Sbjct: 372 SVPDTL---SQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCA 428

Query: 412 TYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           T +  F V P +      + R  GK+  LA GY G   A + M                 
Sbjct: 429 TASAMFGV-PVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG---------------- 471

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                   A++     +  + +  AWR  +  +  +W+++ Q  
Sbjct: 472 ------------------------ALKMGLTASELQPIVDAWRAANPNIVAMWHDVDQTA 507

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-- 584
            Q      AI  R    +  +     K  L + LPSGR L Y    +G NR    + T  
Sbjct: 508 IQ------AITTRSTVTLGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYW 561

Query: 585 -----RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                R+  +  TYGGKL ENIVQA +RD+LAE +     AG+++V+ +HDE+V +    
Sbjct: 562 GQGINRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKD 621

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                + +  LM   P+WA GLP+ A GY+   Y K
Sbjct: 622 SGTTVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657


>gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 662

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 225/719 (31%), Positives = 339/719 (47%), Gaps = 102/719 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ++L KCG+ KYAE     ++LF +  D  PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF-----NLDIPIHR----------------WICTL 97
           +AL +  VT  A N+ FER  L         +LD P H                 W C++
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLD-PFHDQHPLSKKCARFLNPAGWKCSM 119

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EA 153
           V +   GLP +L+ VG  L L +QKM+EG+ELI  FC   K         RN P H  + 
Sbjct: 120 VWSAYLGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCIPCKETKANGGRTRNLPQHALDK 179

Query: 154 WRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W LF  Y K DV V   I +RL+  P+  +  E ++LDQ INDRG  +D+ LA     + 
Sbjct: 180 WNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVALD 239

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              R  L   L+  T GL + +  ++ L  WL  + GL  + L +   Q +L + ++   
Sbjct: 240 AKSRESLMAALKERT-GLENPNSVIQMLD-WL-EQHGLKTDSLGKKNVQELLKTAQEPLR 296

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             + +   R + ++S+V K   +      DGR RG  QF GA+RTGR++G     QNLP+
Sbjct: 297 SVLLL---RQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353

Query: 332 ---PSRSH-EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
              P  S   EL +   +    +  D  P  ++S  +R+  +   G K VV+D + IEAR
Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIP-DVLSQLIRTAFVPRAGMKFVVSDFSAIEAR 412

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGA 445
           V++W+AGE+WK + F  G+D+Y +T ++ F V   +  +  + R  GK+ ELA GY G  
Sbjct: 413 VISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSV 472

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            A + M +   L++                              PE  + +L        
Sbjct: 473 GALKAMGA---LDMGI----------------------------PEEELGNLV------- 494

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             ++WR  +  + + W ++  A + TI+    +     R      M      L + LPSG
Sbjct: 495 --QSWRSANPHIVDFWWQVDGAVKTTIKQRIPVWVNNIRFFCQSGM------LFIELPSG 546

Query: 566 RSLVYRD--VGNNRSYLNTTTRQ---LTREY----TYGGKLTENIVQAVSRDILAEGMMN 616
           R L Y    +G NR    + T +    T+++    +YG K  ENIVQ +SRDIL   M  
Sbjct: 547 RRLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQT 606

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  IV  VHDE++ E P     +A  +   M   P WA+GL L+A+GY  + Y+K
Sbjct: 607 LRCCA--IVGHVHDELIIECPKDTSVDA--ICEEMGRTPPWAEGLVLRADGYACEFYQK 661


>gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
 gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
          Length = 662

 Score =  280 bits (715), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 219/729 (30%), Positives = 335/729 (45%), Gaps = 122/729 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M T+ ID ET S +DL KCG+ +Y       ++LF +  D  PV++ D      +P+ + 
Sbjct: 1   MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF-----NLDIPIHR----------------WICTL 97
           +AL +  V   A N+ FER  L          LD P H                 W C++
Sbjct: 61  DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLD-PFHDNHPLSLEHARFLNPEGWRCSM 119

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA- 153
           V A + GLP +LK VG  L+L+ QKM+EGK LI  F   C          RN P+     
Sbjct: 120 VWAATMGLPLSLKGVGAVLQLADQKMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPGK 179

Query: 154 WRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F +Y + DV V   I ++L   P+     + +++DQ INDRG  +D+ L      + 
Sbjct: 180 WATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDMD 239

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              R++L ++++++T   + +   ++++K WL  + G+ ++ L +     +L   K   P
Sbjct: 240 TRSRSELTEKMQAITN--LENPNSVQQMKQWLS-DNGMEVDSLGKKAVTALL---KTAPP 293

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
           +  +V   R + ++S+V K  T+  A+ SD R RG   F GA+RTGRW+G +   QNLP+
Sbjct: 294 ELTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQ 353

Query: 332 -------------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
                         S  +E +  I   +P ++          S  +R+  I  +G +  V
Sbjct: 354 NHLPDLDAARALVKSGDYEAVKMIYEDVPDTL----------SQLIRTAFIPKDGCRFYV 403

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN--VAPAQVTKDQRAIGKVME 436
           AD + IEARV+AW AGE+WK  AF  GED+Y +T  R F+  V    V  + RA GK+ E
Sbjct: 404 ADFSAIEARVIAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAE 463

Query: 437 LALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           LA GY G   A + M +   GL+ +    +V +                           
Sbjct: 464 LACGYGGSTGALKAMGALEMGLSEDELPDIVSS--------------------------- 496

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                         WR  + ++ + W ++ +A    ++N K       R   L +  +  
Sbjct: 497 --------------WRDANQQIVKFWWDVDKAVMAAVKNHKTT-----RLGRLAFFWQ-A 536

Query: 556 NNLILMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVS 606
             L + LPSGR+L Y    VG NR      +Y     T++  R  +YG K  ENIVQA S
Sbjct: 537 GMLFITLPSGRNLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATS 596

Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           RDIL   M        D+ + +HDE+V E       +   L   M   P+WA GL L+A+
Sbjct: 597 RDILCNSMKMLRHC--DVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRAD 652

Query: 667 GYESKRYRK 675
           GY    Y+K
Sbjct: 653 GYVCDFYKK 661


>gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
 gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
          Length = 649

 Score =  279 bits (714), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 220/717 (30%), Positives = 342/717 (47%), Gaps = 114/717 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + TL  D ET S ++L KCG+ +Y  A+D  ++LFA+  D   V++ D      +P ++ 
Sbjct: 4   IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFN--LDIPIHR------WICTLVLARSNGLPSALK 110
            ALE+  V   AHN+ FER     CF+  L  P+ +      W CT+  A   GLP +L 
Sbjct: 64  SALEDDKVIKYAHNASFERI----CFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLV 119

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYD----RNKP-NHREAWRLFGEYCKGDV 165
            VG  L L  QKM EGK+LI  FC G       +    RN P +  E W  F  Y   DV
Sbjct: 120 GVGAVLGLGKQKMTEGKDLIRFFC-GPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDV 178

Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
               EI ++L   P+     + ++L + IND G  VD+        + ++  TKL  +++
Sbjct: 179 EAEMEIEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQ 238

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMR 282
            +T   + +   ++++K WL  + GL     T+T  ++ ++   K  P+ + +V   R +
Sbjct: 239 EITE--LDNPNSVQQMKDWLS-DNGLE----TDTLGKKAVAELLKDAPEHLAEVLKLRQQ 291

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-------RPSRS 335
            ++S+V K   +  A+ SDGR+RG   FLGA+RTGR+S  +   QNLP       + +RS
Sbjct: 292 LAKSSVKKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARS 351

Query: 336 ------HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                  E L+ +   +P ++          S  +R+  +  EG K +VAD + IEARVL
Sbjct: 352 IVKNGDSEALELLYEDIPDTL----------SQLIRTAFVPKEGNKFIVADFSAIEARVL 401

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447
           +W+AGEQW+ + F  G D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A
Sbjct: 402 SWLAGEQWRNEVFANGGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGA 461

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + M                                         A+E        + + 
Sbjct: 462 LKAMG----------------------------------------ALEMGLEEEELKPLV 481

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            AWR  +  + + W ++ +  ++ I+  K   +++ +++   YM      L ++LPSGR 
Sbjct: 482 NAWRASNPNIVKFWWDVDREVKKCIKEKK---SQEVQNIKFHYM---SGMLFIVLPSGRK 535

Query: 568 LVY--RDVGNN------RSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           L Y   ++G N       +Y     T++  R  +YG K  ENIVQA+SRDIL   M   T
Sbjct: 536 LAYVKPNIGENIFGGESVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAM--KT 593

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +   IV  VHDE++ E   +   +  M+   M   P WAKGL L A+GYE   Y+K
Sbjct: 594 LSTCSIVAHVHDEVIIEADQS--LSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648


>gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 646

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 213/712 (29%), Positives = 332/712 (46%), Gaps = 104/712 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L K G+ +Y E  +  ++LFA+  D  PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+ DV   A N+ FER  L           +    W C++V A + GLP +L+ VG 
Sbjct: 61  LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN+P H  + W +F +Y   DV     
Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I +RL   P+ ++  + +++DQ INDRG  +D+ L     ++    RTKL + ++ +T  
Sbjct: 181 IQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKEITE- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL  + GL  + L +     +L   K   P+  QV   R + ++S+V
Sbjct: 240 -LENPNSVQQMKAWLS-DNGLETDTLGKKAVAELL---KSAPPKLSQVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SRS 335
            K   + + + +DGR RG  QF GA+RTGR+SG     QNLP+              S +
Sbjct: 295 RKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSGN 354

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
            E ++ +   +P ++          S  +R+  I  EG + +VAD + IEAR++AW AGE
Sbjct: 355 FEAVELLYEDVPDTL----------SQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGE 404

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           +W+   F  G D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A + M +
Sbjct: 405 KWRQDVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA 464

Query: 454 -TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              GL  +    LV                                          AWRQ
Sbjct: 465 LDMGLTEDELPPLV-----------------------------------------DAWRQ 483

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-- 570
            +  + + W  +  A  + ++           +  L +  +    L + LPSGR L Y  
Sbjct: 484 SNPNIVKFWWNVDHAVMEAVK-----FKHTTSEYGLTFSCRS-GMLFITLPSGRKLAYVK 537

Query: 571 RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
             +G N+      +Y    +T++  R  +YG K  ENIVQA +RDIL   M   T     
Sbjct: 538 PKIGTNKFGGQCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQ--TLRCCS 595

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           IV+ +HDE+V E   +   +A  +   M   P WAKGL L+A+GY +  Y+K
Sbjct: 596 IVMHIHDEVVIEADPSMSLDA--ICEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 674

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 227/731 (31%), Positives = 345/731 (47%), Gaps = 130/731 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L +D ET S ++L KCG+ KYAE  D  ++LF +  D   V++ D      +P+V+ 
Sbjct: 17  LENLSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 76

Query: 59  EALENTDVTIVAHNSYFERTVLKACF----------------NLDIPIHRWICTLVLARS 102
            AL +  VT  A N+ FER  L                     L +    W CT++ + +
Sbjct: 77  SALTDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSAT 136

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNH-RE 152
            GLP +L+ VG  L L  QK+ EGK LI  FC          G T      RNK  H +E
Sbjct: 137 LGLPMSLENVGIVLGLDKQKLTEGKNLIKYFCLPCNPTKVNGGRT------RNKYFHDKE 190

Query: 153 AWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
            W  F  Y K DV V   I ++L   P+     + +YLDQ INDRG  +D     +  ++
Sbjct: 191 KWEQFKSYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAIKL 250

Query: 211 VDVE-RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
            D+E +T L  EL+ +T GL + +  L+ +++WL  + GL +E L +    + L   K +
Sbjct: 251 -DLEVKTHLMSELKRVT-GLENPNSVLQ-MRSWL-KKHGLEMESLGKKEVAKEL---KTV 303

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
             +  +V   R + ++S+V K   +  A   D R RG  +F GA+RTGR++G +   QNL
Sbjct: 304 GKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNL 363

Query: 330 PR-------PSRSH------EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           P+        +RS       E L+ +   +P ++          S  +R+  I   G K 
Sbjct: 364 PQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTL----------SQLIRTAFIPRTGLKF 413

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKV 434
           +VAD + IEARVLAW+AGE+W+++ F  G+D+Y ++ ++ F+V   +  V    R  GK+
Sbjct: 414 IVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKI 473

Query: 435 MELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            ELALGY G   A + M +   GL  +    LV                           
Sbjct: 474 AELALGYGGSVGALKAMGALDMGLTEDELQPLV--------------------------- 506

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                          AWR  +  V+ LW ++ +A +Q +    ++     R   +V+  K
Sbjct: 507 --------------DAWRSSNPMVTTLWWDVDRAVKQCVHEHVSV-----RTHNIVFTYK 547

Query: 554 DKNNLILMLPSGRSLVY--------RDVGNNRSYLNT-TTRQLTREYTYGGKLTENIVQA 604
               LI+ LPS R L Y        +  G + +Y    +T++  R  +YG K  ENI QA
Sbjct: 548 S-GFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQA 606

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           ++RDIL   M   T   Y IV  VHDE + ET  +   +   +  LM   P WA+GL L+
Sbjct: 607 IARDILIYAMQ--TLKEYRIVAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLR 662

Query: 665 AEGYESKRYRK 675
           A+GYE + Y+K
Sbjct: 663 ADGYECEFYKK 673


>gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
 gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
          Length = 662

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 221/725 (30%), Positives = 332/725 (45%), Gaps = 114/725 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S I+L+KCG+ KYAE  D  ++LF +  D   V++ D      +PQ L 
Sbjct: 1   MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF-NLDI---PIH----------------RWICTLV 98
           +AL +  +   A N+ FER  L     +L I   P H                 W C++V
Sbjct: 61  DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154
            A + GLP +L+ VG  L L  QK+ EGKELI  F   C          RN+P H  E W
Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQKLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPEKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---LDQTINDRGYCVDVALAHTLNQIV 211
             F  Y   DV     I  RL      E  +WY   +DQ INDRG  +D+ L     ++ 
Sbjct: 181 DAFKRYNIRDVETEMGIKDRLSKFPVPEA-VWYEYHIDQEINDRGVRIDMDLVTEAIEMD 239

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              RT+L   ++ +T   + +   ++++K WL    GL     T++  ++V++   K  P
Sbjct: 240 TRSRTELTSAIKKMTD--LENPNSVQQMKQWLS-NNGLE----TDSLGKKVVAELIKTAP 292

Query: 272 QAIQ-VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
             +Q V   R + ++S+V K  T+  A+  DGR RG   F GA+RTGRW+G +   QNLP
Sbjct: 293 PELQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLP 352

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI--------ISDCVRSCVIASEGKKLVVADLA 382
           +       L+ +        + D D +++        +S  +R+  I     +  V+D +
Sbjct: 353 Q-----NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFS 407

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALG 440
            IEARV+AW AGE W+ K F  G D+Y  + ++ F+V   +  +    R  GK+ ELALG
Sbjct: 408 AIEARVIAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALG 467

Query: 441 YQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
           Y G   A + M +   GL+ +    LV                                 
Sbjct: 468 YGGSIGALKAMGAIEMGLSEDELPPLV--------------------------------- 494

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                    AWRQ +  + + W ++ +A  + +++      +       +        L 
Sbjct: 495 --------DAWRQTNPNIVKFWWDVDRAVMEAVKH------KHTTSCYGLTFSCRSGMLF 540

Query: 560 LMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDIL 610
           + LPSGR+L Y    +G N+      +Y    +T++  R  +YG K  ENIVQA SRDIL
Sbjct: 541 ITLPSGRNLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDIL 600

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
              M   T    +IV+ +HDE+V E       +  +L   M   P WA+GL L+A+GY  
Sbjct: 601 CYAM--KTLRNCEIVMHIHDELVIEADPC--MSLDVLCEQMGRTPPWARGLKLRADGYTC 656

Query: 671 KRYRK 675
             Y+K
Sbjct: 657 PFYKK 661


>gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
 gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
          Length = 651

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 221/705 (31%), Positives = 330/705 (46%), Gaps = 93/705 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET   +DL K G+  YAED    ++L A   D+ PV ++D   + +  Q+L +AL
Sbjct: 6   LSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTKENLPDQIL-QAL 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSALKAV 112
            N  +   A N+ FER  L        P          + W C++V +   GLP +L+ V
Sbjct: 65  VNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSLEGV 124

Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168
           G  LKL  QK++EG ++I  FC   K         RN P+H  + W  F  Y K DV V 
Sbjct: 125 GTVLKLKEQKLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKRDVEVE 184

Query: 169 REIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             I  +L   P+     E ++ DQ INDRG  +DV        I +  ++K+ +EL+ LT
Sbjct: 185 LAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEELKELT 244

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            GL + +  L+ +  WL  E G+    L +   + +L   K +  +  +V   R +A++S
Sbjct: 245 -GLENPNSVLQMI-GWL-REHGVTTNSLDKKAVKELL---KVVDAKTTKVLKLRQQAAKS 298

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +V K   +V  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +L +     
Sbjct: 299 SVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQ--NHLPDLKEARDLF 356

Query: 347 PTSITSDPDPL----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
            T      D L      +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+   F
Sbjct: 357 KTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMVF 416

Query: 403 ETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAST-TGLNL 459
           E G+D+Y  + ++ F V   +  +  D R  GK+ ELA GY G   A + M +   GL+ 
Sbjct: 417 EQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMGLDE 476

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                LV +                                         WRQ +  +  
Sbjct: 477 QELQPLVDS-----------------------------------------WRQANPNIVL 495

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
            W ++ +A +       AI  +K+ +   +  K  K  L + LPSGR L Y    +G N+
Sbjct: 496 FWWDVDKAVKT------AIKYQKQTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGENQ 549

Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                 +Y  T T ++  R  +YG K  ENI+QA+SRDILA  M       + IV  VHD
Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRIVGHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           EI+ E   +   N   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 608 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis]
 gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 651

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 214/703 (30%), Positives = 335/703 (47%), Gaps = 89/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET   IDL K G+ +YAED    ++LFA   D+ PV ++D  +   +PQ + EAL
Sbjct: 6   LSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDILEAL 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSALKAV 112
            +  V   A N+ FER  L        P          + W C+++ +   GLP +L+ V
Sbjct: 65  VDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSLEGV 124

Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168
           G  LKL  +KM EG +LI  FC   K         RN P+H    W  F +Y + DV V 
Sbjct: 125 GTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDVEVE 184

Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             I +RL+  P+     + ++ DQ INDRG  +D+       +I    + K+ +EL++LT
Sbjct: 185 LAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEELKALT 244

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
              + +   + ++  WL  E G+  + L +   + +L +  + T Q +++   R +A++S
Sbjct: 245 R--LENPNSVLQMIGWL-REHGVTTDSLDKKVVKELLKTADETTAQVLKL---RQQAAKS 298

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH 345
           +V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      EE  ++   
Sbjct: 299 SVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEARELFGT 358

Query: 346 LPTSITSD-PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                T    D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K FE 
Sbjct: 359 GDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVFEQ 418

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
           G+D+Y  + ++ F V   +  ++   R  GK+ ELA GY G   A + M +   GL    
Sbjct: 419 GKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLKDKE 478

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV +                                         WRQ +  +   W
Sbjct: 479 LRPLVDS-----------------------------------------WRQANPNIVLFW 497

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR-- 577
            ++ +A +  I+         + +   +  + +K  L + LPSGR L Y    +G N+  
Sbjct: 498 WDVDRAVKTAIKQ------HIQTETHGIQFEVNKGMLSITLPSGRKLAYVKPKIGENQFG 551

Query: 578 ----SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
               +Y  T T ++  R  +YG K  ENIVQA+SRDILA  M    +  ++IV  VHDE+
Sbjct: 552 GESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVHDEV 609

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E       +   + +LM   P W   + L+A+GYE   Y+K
Sbjct: 610 IIECGIDQSLDE--IAYLMGIAPEWMTDIKLRADGYECSFYQK 650


>gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 646

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 213/708 (30%), Positives = 326/708 (46%), Gaps = 96/708 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L ID ET S  +L K G+ +Y E  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            AL +  V   A N+ FER  L     L     I    W C++V A + GLP +L+ VG 
Sbjct: 61  TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            LKL  QK+ EGK+LI  F   C          RN   H  + W  F +Y   D+     
Sbjct: 121 VLKLDKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETEMS 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++L   P+     + ++LDQ INDRG  +D+ L      +    R++L   ++ LT  
Sbjct: 181 IQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLTE- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSA 287
            + +   ++++K WL  + G+     T+T  +++++   K  P  +  V + R + ++S+
Sbjct: 240 -LDNPNSVQQMKQWL-ADNGME----TDTLGKKIVAELLKTAPLDLADVLSLRQQLAKSS 293

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K   +  A+ +DGR RG  QF GA+RTGRW+G +   QNLP+       L+ +     
Sbjct: 294 VRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQ-----NHLEDLAEARA 348

Query: 348 TSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                D D L+++        S  +R+  +   G +L+V+D + IEARV+AWMAGE+W+ 
Sbjct: 349 LVRFGDFDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQ 408

Query: 400 KAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456
             F  G D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A + M +   G
Sbjct: 409 DVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMG 468

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L  +    LV                                          AWRQ +  
Sbjct: 469 LEEDELPQLV-----------------------------------------DAWRQANPC 487

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VG 574
           + + W ++ +A  +      A+  ++      +        L + LPSGR L Y    +G
Sbjct: 488 IVKFWWDVDKAAME------AVRYKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIG 541

Query: 575 NNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
            N+      +Y     T++  R  +YG K  ENIVQA +RDIL   M   T     IV+ 
Sbjct: 542 ENKFGGQCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQ--TLQHCSIVMH 599

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDEIV E        A  +   M   PSWAKGL L+A+GYE+  Y+K
Sbjct: 600 VHDEIVIEADPRMSLKA--VCEQMGRTPSWAKGLLLRADGYETDFYKK 645


>gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 663

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 219/734 (29%), Positives = 330/734 (44%), Gaps = 134/734 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + TL ID ET S IDL KCG+ KY+E  D  V+LFA+  D   V + D  +   +P  + 
Sbjct: 4   IGTLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEIL 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100
           +AL +  V   A N+ FER  L      + P                     W C+++ +
Sbjct: 64  QALVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWS 123

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK---------GETHECLYDRNKPNHR 151
              GLP +L+ VG  L L  QK++EGK+LI  FCK         G T      RN P H 
Sbjct: 124 AYMGLPLSLEGVGAVLGLEEQKLKEGKDLIRYFCKPCAATKVNGGRT------RNLPEHA 177

Query: 152 -EAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            + W LF  Y K DV V   I K+L   P+     E ++LDQ INDRG  +D+ +     
Sbjct: 178 PDKWELFKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAI 237

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           +I  + +  L   ++ LT   + +   + ++K WL    G+  + L +     +L   K 
Sbjct: 238 RIDAISKATLMATMQDLTD--LENPNSVAQMKGWL-AAKGVDTDSLDKKAVIELL---KT 291

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           +      V   R + ++S+V K   +  A+  DGR RG  QF GA+R+GRW+G +   QN
Sbjct: 292 VPTDVADVLTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQN 351

Query: 329 LPR-------------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           LP+              S  +E L+    ++P           ++S+ +R+  I  EG K
Sbjct: 352 LPQNHMEDLDVARDIVKSGDYEILNMFYDNVPG----------VLSELIRTAFIPREGYK 401

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGK 433
             VAD + IEARV+A +A E+W++K F    D+Y  + +  F V   +  ++   R  GK
Sbjct: 402 FAVADFSAIEARVIAHLAKERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGK 461

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           + ELALGY G   A   M +                                        
Sbjct: 462 IAELALGYGGSVGALTSMGA---------------------------------------- 481

Query: 494 IEDLFIGTACERVK---KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              L +G A E ++    AWR  +  + + W ++  A ++ I   K   A K   +  +Y
Sbjct: 482 ---LDMGLAEEELQPLVDAWRAANPNIVQFWWDVDNAVKRAI---KERTATKTHGIRFIY 535

Query: 551 MKKDKNNLILMLPSGRSLVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENI 601
                  L ++LPSGR L Y    +G N+      +Y    T ++  R  +YG K  ENI
Sbjct: 536 KSA---MLFIVLPSGRRLAYVKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENI 592

Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL 661
           VQA+SRDIL   +   +     IV  VHDE++ E        A  +   M   P W +GL
Sbjct: 593 VQAISRDILCYALRTLSHCF--IVGHVHDEVIIECRQDASLEA--ICEQMGRVPEWIEGL 648

Query: 662 PLKAEGYESKRYRK 675
            L+A+GYE++ Y+K
Sbjct: 649 LLRADGYETQFYKK 662


>gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1]
          Length = 658

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 221/723 (30%), Positives = 329/723 (45%), Gaps = 114/723 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M T+ ID ETRS  D+TKCG+  YA+     + L +   DD  V+L+D  +   +P+ + 
Sbjct: 1   MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP-IHR-----------------WICTLVLA 100
            AL +  V   A N  FER  L      + P I R                 W CT++  
Sbjct: 61  TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKP-NHREAWRLFG 158
           R+ GL S L + G ALKL  QKM EGK LI  FC   +T + +   + P +  E W  F 
Sbjct: 121 RTLGLSSTLASAGAALKLEQQKMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWETFK 180

Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            Y K DV     I +RL   P+     E +YLDQ INDRG  VD+ L      +    + 
Sbjct: 181 AYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQAKA 240

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L  E+  LT   + +   + +L  WL  E G   + L +   + +L + K      +++
Sbjct: 241 TLSSEMRRLTG--IENPNSVYQLLEWLG-EQGYKSDCLDKAAVKELLKTVKDPVKSVLEL 297

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PS 333
              R+  S+S+V K   +  A  SD R RG   F GASRTGRW+G +   QNLP+   P 
Sbjct: 298 ---RLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIPD 354

Query: 334 RS----------HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
            +          ++E++     +P ++          S  +R+  +   G K ++AD + 
Sbjct: 355 LTEARNTVKYGYYDEVEMFYGDVPDTL----------SQLIRTAFVPRPGYKFIIADFSA 404

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGY 441
           IEARV+AW+AGE+W++ AF  G D+Y  + ++ F V   +  V  + R  GKV ELA GY
Sbjct: 405 IEARVIAWLAGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGY 464

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
            G   A + M     LNL+                D+E                      
Sbjct: 465 GGSVGAMKAMGG-DALNLS----------------DSE---------------------- 485

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             +++   WR     + + W  +  A ++ I   K  I  +   +   Y  K    L + 
Sbjct: 486 -LKQIVTDWRDASPNIVKFWWTVDDAVKKAI---KQKITTETHGLQFSYQSK---MLFIT 538

Query: 562 LPSGRSLVYR--DVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAE 612
           LPSGR L Y    +G N+      +Y+    +++  R  +YG K  ENIVQAV+RD+L  
Sbjct: 539 LPSGRKLCYAHPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMF 598

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
            M   T     IV  +HDE++ E       +   +   M   P+WA+GL L+A+GYE + 
Sbjct: 599 SMQ--TMRCCFIVGHIHDEMIIEA--DRRMSLDEVCRQMERTPAWAEGLLLRADGYECEF 654

Query: 673 YRK 675
           YRK
Sbjct: 655 YRK 657


>gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
 gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
          Length = 651

 Score =  273 bits (698), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 220/705 (31%), Positives = 329/705 (46%), Gaps = 93/705 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET   +DL K G+  YAED    ++L A   D+ PV ++D   + +  Q+L +AL
Sbjct: 6   LSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTKENLPDQIL-QAL 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSALKAV 112
            N  +   A N+ FER  L        P          + W C++V +   GLP +L+ V
Sbjct: 65  VNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSLEGV 124

Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168
           G  LKL  QK++EG ++I  FC   K         RN P+H  + W  F  Y K DV V 
Sbjct: 125 GTVLKLKEQKLKEGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKRDVEVE 184

Query: 169 REIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             I  +L   P+     E ++ DQ IND G  +DV        I +  ++K+ +EL+ LT
Sbjct: 185 LAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEELKELT 244

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            GL + +  L+ +  WL  E G+    L +   + +L   K +  +  +V   R +A++S
Sbjct: 245 -GLENPNSVLQMI-GWL-REHGVTTNSLDKKAVKELL---KVVDAKTTKVLKLRQQAAKS 298

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +V K   +V  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +L +     
Sbjct: 299 SVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQ--NHLPDLKEARDLF 356

Query: 347 PTSITSDPDPL----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
            T      D L      +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+   F
Sbjct: 357 KTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMVF 416

Query: 403 ETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAST-TGLNL 459
           E G+D+Y  + ++ F V   +  +  D R  GK+ ELA GY G   A + M +   GL+ 
Sbjct: 417 EQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMGLDE 476

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                LV +                                         WRQ +  +  
Sbjct: 477 QELQPLVDS-----------------------------------------WRQANPNIVL 495

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
            W ++ +A +       AI  +K+ +   +  K  K  L + LPSGR L Y    +G N+
Sbjct: 496 FWWDVDKAVKT------AIKYQKQTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGENQ 549

Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                 +Y  T T ++  R  +YG K  ENI+QA+SRDILA  M       + IV  VHD
Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRIVGHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           EI+ E   +   N   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 608 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 641

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 214/708 (30%), Positives = 327/708 (46%), Gaps = 101/708 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L +D ETRS +D+ + G+ +Y  AED  ++LF +  D   V++ D V    +PQ + 
Sbjct: 1   MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH-----------RWICTLVLARSNGLPS 107
           +AL +  V   A N+ FER  L    +    +H            W CT+V +   GLP 
Sbjct: 61  DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           +L  V   L L  QKM EGK LI  F     HE       P   E W LF  Y + DV V
Sbjct: 121 SLAVVARVLGLEEQKMTEGKALIRYFSTPPFHE-------PTG-EKWELFKSYNRRDVEV 172

Query: 168 TREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
              I +RL   P+     E + LDQ INDRG C+D+       +I    + K+   L++L
Sbjct: 173 EMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRLKTL 232

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           T GL  +   + ++K WL  E G+  E L + T   +L++   L  + +++   R + ++
Sbjct: 233 T-GL-ENPNSVAQMKAWL-KEQGVETESLDKKTVAALLTNVSALLKEVLEL---RQQLAK 286

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           S+V K   +   + +D R RG  QF GA+RTGR+SG     QNLP+   ++ E  + +  
Sbjct: 287 SSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARSLVR 346

Query: 346 ------LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 L     S  D   ++S  +R+  I  EG+K +VAD + IEARVL+W+A E+W++
Sbjct: 347 QGNFAALELLYESVSD---VLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRM 403

Query: 400 KAFETGEDLYVTTYARSF--NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456
             F    D+Y  T  R F  NV         R  GK  ELA GY G   A +   +  +G
Sbjct: 404 DVFANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFGALESG 463

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +    LV                                          AWR  +  
Sbjct: 464 MKEDELKPLV-----------------------------------------DAWRTANPN 482

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VG 574
           + + W  + +A +  I+  ++I       +  +Y       + + LPSGR L Y    +G
Sbjct: 483 IVDFWWAVDRAAKDCIKE-RSITG--THGIKFIY---QSGMMFIELPSGRRLAYVKPRIG 536

Query: 575 NNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
            N+      +Y+    +++  R  +YG KL ENI QA+SRD+L   M   T    DIV  
Sbjct: 537 ENQFGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQ--TLRSMDIVAH 594

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDE++ E  +    +++     M   P WA+GL L+A+G+E + Y+K
Sbjct: 595 VHDELIIECDERVSLSSAC--EQMARTPLWAEGLLLRADGFECQFYQK 640


>gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes]
 gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 651

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 220/715 (30%), Positives = 337/715 (47%), Gaps = 113/715 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET   IDL K G+ +YAED    ++LFA   D+ PV ++D  +   +PQ + EAL
Sbjct: 6   LSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDILEAL 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSALKAV 112
            +  V   A N+ FER  L        P          + W C+++ +   GLP +L+ V
Sbjct: 65  VDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSLEGV 124

Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168
           G  LKL  +KM EG +LI  FC   K         RN P+H  + W  F +Y + DV V 
Sbjct: 125 GTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRRDVEVE 184

Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             I +RL+  P+     + ++ DQ INDRG  +DV       +I    + K+ +EL++LT
Sbjct: 185 LAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEELKALT 244

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            GL + +  L+ +  WL  E G+  + L +   + +L +  + T Q +++   R +A++S
Sbjct: 245 -GLENPNSVLQMI-GWL-REHGVTTDSLDKKAVKGLLKTVDETTAQVLKL---RQQAAKS 298

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+             HL
Sbjct: 299 SVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQ------------NHL 346

Query: 347 PT-------SITSDPDPLQIISDC-------VRSCVIASEGKKLVVADLAGIEARVLAWM 392
           P          T D +  ++I D        +R+  + S+GKK +V D + IEARVL+ +
Sbjct: 347 PDLEEARELFGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHL 406

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQK 450
           AGE+W+ K FE G+D+Y  + ++ F V   +  ++   R  GK+ ELA GY G   A + 
Sbjct: 407 AGERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKA 466

Query: 451 MAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           M +   GL       LV +                                         
Sbjct: 467 MGALDMGLTEEELQPLVNS----------------------------------------- 485

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           WR  +  +   W ++  A +  +   K +I      +     +  +  L + LPSGR L 
Sbjct: 486 WRLANPNIVLYWWDVDNAVKTAV---KELIPTSTHGIQF---EVKRGILFITLPSGRKLA 539

Query: 570 YRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           Y    +G+N+      +Y  T T ++  R  +YG K  ENIVQA+SRDILA  M      
Sbjct: 540 YIKPRIGDNQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLKN- 598

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + IV  VHDE++ E P   + +   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 599 -FKIVGHVHDEVIIECPIEQKLDE--VASLMGIAPDWLSDINLRADGYECFFYQK 650


>gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes]
 gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes]
 gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 651

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 218/705 (30%), Positives = 333/705 (47%), Gaps = 93/705 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET   IDL K G+ +YAED    ++L A   D+ PV ++D  +   +PQ + EAL
Sbjct: 6   LSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYD-FNKEKLPQDILEAL 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIH---------RWICTLVLARSNGLPSALKAV 112
               V   A N+ FER  L        P            W C+++ +   GLP +L+ V
Sbjct: 65  VEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSLEGV 124

Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168
           G  LKL  QKM EG +LI  FC   K         RN P+H    W  F +Y + DV V 
Sbjct: 125 GTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDVEVE 184

Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             I +R++  P+ S     ++ DQ INDRG  +DV       +I    + K+  EL++LT
Sbjct: 185 LAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAELKTLT 244

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            GL   +  L+ + +WL  E G+  + L +   + +L +  + T Q +++   R +A++S
Sbjct: 245 -GLEKPNSVLQMI-SWL-REHGVATDSLDKKAVKELLKTVDETTAQVLKL---RQQAAKS 298

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS----RSHEELDQI 342
           +V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +   EL + 
Sbjct: 299 SVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARELFRT 358

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                T +  D      +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K F
Sbjct: 359 GDLESTELLYDTQ--DTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVF 416

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNL 459
           E G+D+Y  + ++ F V   +  ++   R  GK+ ELA GY G   A + M +   GL+ 
Sbjct: 417 EQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLSE 476

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                LV +                                         WRQ +  +  
Sbjct: 477 EELQPLVNS-----------------------------------------WRQANPNIVL 495

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR 577
            W ++  A +  +   K ++    +++     +     L + LPSGR L Y    +G N+
Sbjct: 496 YWWDVDNAVKTAV---KELLPTSTQNIQF---EVKSGILFITLPSGRKLAYIKPRIGENQ 549

Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                 +Y  T T ++  R  +YG K  ENIVQA+SRDILA  M       + IV  VHD
Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLND--FKIVGHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P   + +   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 608 EVIIECPIEQKLDE--VASLMGIAPYWLSDINLRADGYECFFYQK 650


>gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 646

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 215/714 (30%), Positives = 321/714 (44%), Gaps = 108/714 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L K G+ +Y E  +  ++LFA+  D  PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
            ALE+  V   A N+ FER  L          +     W C+++ A + GLP +L+ VG 
Sbjct: 61  AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN+P H  + W  F  Y   DV     
Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETEMG 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  +L   P+ ++  E +++DQ INDRG  +D+ L      +    R +L   ++ +T  
Sbjct: 181 IQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKDMTE- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL  + G+  + L +     +L   K        V   R + ++S+V
Sbjct: 240 -LENPNSVQQMKQWLS-DNGIETDSLDKKAVAELL---KDAPDNLADVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   + + + SDGR RG  QF GA+RTGR+SG     QNLP+             HLP 
Sbjct: 295 RKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQ------------NHLPD 342

Query: 349 -------SITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                    + D D ++++        S  +R+  I  E     VAD + IEARV+AW A
Sbjct: 343 LSEARSLVRSGDFDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFA 402

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKM 451
           GE W+ + FE G D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A + M
Sbjct: 403 GESWRQQVFEKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAM 462

Query: 452 AS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            +   GLN      LV                                          AW
Sbjct: 463 GALDMGLNEEELPALV-----------------------------------------DAW 481

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           RQ + R+ E W  + +A  + ++           D  L +  K    L + LPSGR L Y
Sbjct: 482 RQANPRIVEFWWAVDRAVMEAVK-----YKHTTTDYGLTFSCK-SGMLFITLPSGRKLAY 535

Query: 571 --RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
               +G N+      +Y     T++  R  +YG K  ENIVQA +RDIL   M   T   
Sbjct: 536 VKPKIGTNKFGGSCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAM--KTLRC 593

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             IV+ +HDE+V E       +A  +   M   P WAKGL L+A+GY +  Y+K
Sbjct: 594 CSIVMHIHDELVIEADPKVSLDA--ICEQMGRTPPWAKGLLLRADGYTTPFYKK 645


>gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14]
          Length = 651

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 216/719 (30%), Positives = 338/719 (47%), Gaps = 121/719 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET   IDL K G+ +YAED    ++LFA   ++ PV ++D   +  +PQ + EAL
Sbjct: 6   LSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLSKEK-LPQDILEAL 64

Query: 62  ENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR------WICTLVLARSNGLPSALKAV 112
            +  V   A N+ FER  L      ++ D+ + R      W C+++ +   GLP +L+ V
Sbjct: 65  VDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSLEGV 124

Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168
           G  LKL  QKM EG +LI  FC   K         RN P+H  + W  F +Y + DV V 
Sbjct: 125 GTVLKLKDQKMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRRDVEVE 184

Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             I +RL+  P+     + +  DQ INDRG  +DV       +I    + ++ +EL++LT
Sbjct: 185 LAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEELKALT 244

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
              + +   + ++  WL  E G+  + L +   + +L   K +  +  +V   R +A++S
Sbjct: 245 S--LENPNSVLQMIGWL-REHGVTTDSLDKKAVKELL---KTVDDKTSKVLKLRQQAAKS 298

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+             HL
Sbjct: 299 SVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQ------------NHL 346

Query: 347 PT-------SITSDPDPLQIISDC-------VRSCVIASEGKKLVVADLAGIEARVLAWM 392
           P          T D +  +++ D        +R+  + S+GKK +V D + IEARVL+ +
Sbjct: 347 PDLEEARKLFKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHL 406

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQK 450
           AGE+W+ K FE G+D+Y  + ++ F V   +  ++   R  GK+ ELA GY G   A + 
Sbjct: 407 AGEKWRSKVFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKA 466

Query: 451 MAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           M +   GL+      LV +                                         
Sbjct: 467 MGALDMGLSEEELQPLVNS----------------------------------------- 485

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL----VYMKKDKNNLILMLPSG 565
           WRQ +  +  LW ++  A +  +          +  +P     +  +     L + LPSG
Sbjct: 486 WRQANPNIVLLWWDVDNAVKTAV----------KEQIPTSTHGIQFEVRSGILFITLPSG 535

Query: 566 RSLVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           R L Y    +G N+      +Y  T T ++  R  +YG K  ENIVQA+SRDILA  +  
Sbjct: 536 RKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQ 595

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +  + IV  VHDE++ E P   + +   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 596 LKE--FKIVGHVHDEVIIECPMEQKIDK--IASLMGIAPDWMSDINLRADGYECLFYQK 650


>gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378]
          Length = 684

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 215/710 (30%), Positives = 330/710 (46%), Gaps = 100/710 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L K G+ +Y  A+D  VILF +  D   V++ D +    +P+ + 
Sbjct: 39  MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
           +AL +  +T  A N+ FER  L          +     W C++V +   GL  +L+ VG 
Sbjct: 99  DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158

Query: 115 ALKLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
            L L  QK+ EGK+LI  FC          G T     D       + W+ F  Y K DV
Sbjct: 159 VLGLEKQKLTEGKDLIRYFCLPCTPTKINGGRTRNLSTD-----EIDKWQQFKAYNKRDV 213

Query: 166 TVTREIFKRLEPLSSKEQELW---YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
               +I +RL      E ++W   +LDQ INDRG  VD+        + D+   KL   +
Sbjct: 214 EAEIQIQQRLIKFPVPE-DIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVM 272

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + +T   + +   ++++K+WL  E GL +E L +      L   K+   +  +V + R +
Sbjct: 273 QQITN--LDNPNSVQQMKSWL-CENGLEMETLGKKAVAEKL---KETDGELNEVLSLRQQ 326

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQ 341
            ++S+V K   +  A+ SD R RG  QF GA+RTGR++G +   QNLP+      +E   
Sbjct: 327 LAKSSVKKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARN 386

Query: 342 IITH-----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           I+ +     L       PD L   S  +R+  +   G K +VAD + IEARVL+W+AGE 
Sbjct: 387 IVRNGDVETLEMLYEDIPDTL---SQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGET 443

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           W+ K F +G D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A + M   
Sbjct: 444 WRTKVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG-- 501

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                                 A+E        + +  AWR  +
Sbjct: 502 --------------------------------------ALEMGLEEEELKPLVNAWRMSN 523

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-- 572
             +++ W ++ +A +Q ++  K+      ++   +        L ++LPSGR L Y    
Sbjct: 524 PNITQFWWDVDRAAKQCVKENKS------QETHSIEFHCFSGMLFIVLPSGRRLAYVKPR 577

Query: 573 VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
           +G N+      +Y     T++  R  +YG K  ENIVQA+SRDIL   M +     Y IV
Sbjct: 578 IGENQFGGESVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSLRH--YRIV 635

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             VHDE++ ET    + + + +   M+  P WAKGL L A+GYE   Y+K
Sbjct: 636 AHVHDEVIIET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683


>gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 662

 Score =  270 bits (689), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 216/725 (29%), Positives = 335/725 (46%), Gaps = 114/725 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ++L+KCG+ KYAE  D  ++LF +  D   V + D      +PQ + 
Sbjct: 1   MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF-----NLDIPIH----------------RWICTL 97
           +AL +  V   A N+ FER  L         +LD P H                 W C++
Sbjct: 61  DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLD-PFHDNHPLSTECARFLNPESWRCSM 119

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EA 153
           V A + GLP +L+ VG  L L  QK+ EGK+LI  F   C          RN P H  + 
Sbjct: 120 VWAATMGLPLSLEGVGAVLGLEKQKLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPDK 179

Query: 154 WRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F +Y   DV     I  RL   P+     + +++DQ INDRG  +D+ L     ++ 
Sbjct: 180 WEAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEMD 239

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              R++L   ++ +T   + +   ++++K WL  + GL     T++  ++V++   K  P
Sbjct: 240 TRSRSELTAAMKDMT--ALDNPNSVQQMKQWLS-DNGLE----TDSLGKKVVAELIKTAP 292

Query: 272 QAIQ-VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
             +Q V   R + ++S+V K  T+  A+  DGR RG   F G +RTGRW+G +   QNLP
Sbjct: 293 PELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLP 352

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLA 382
           +       L  +        + + D ++++        S  +R+  I  +G +  V+D +
Sbjct: 353 Q-----NHLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFS 407

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALG 440
            IEARV+AW AGE W+ K FETG D+Y  + ++ F+V   +  +    R  GK+ ELALG
Sbjct: 408 AIEARVIAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALG 467

Query: 441 YQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
           Y G   A + M +   GL+ +    LV                                 
Sbjct: 468 YGGSVGALKAMGAIEMGLSEDELPPLV--------------------------------- 494

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                    AWRQ +  + + W ++ ++  + ++              L +  +    L 
Sbjct: 495 --------DAWRQTNPNIVKFWWDVDRSVMEAVK-----YKHTTSSYGLTFSCR-SGMLF 540

Query: 560 LMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDIL 610
           + LPSGR+L Y    +G N+      +Y    +T++  +  +YG K  ENIVQA SRDIL
Sbjct: 541 ITLPSGRNLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDIL 600

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
              M   T     IV+ +HDE+V E       +  +L   M   P WAKGL L+A+GY +
Sbjct: 601 CYAM--KTLRCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGYVT 656

Query: 671 KRYRK 675
             Y+K
Sbjct: 657 PFYKK 661


>gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1]
          Length = 645

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 197/663 (29%), Positives = 308/663 (46%), Gaps = 80/663 (12%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           +P  L+EALE+ DV   A N+ FER + +    +  P   W CT+ LA   G    L AV
Sbjct: 22  LPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAWRCTMALAYMLGFAGDLLAV 81

Query: 113 GEALKLSSQKME--EGKELIARFCKGE--THECLYD-RNKPNHREAWRLFGEYCKGDVTV 167
           G  + L   K++  EGK LI  F K +  T +  ++ RN+    E W  F +Y   DV  
Sbjct: 82  GTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEATDPEDWWHFCKYNIRDVET 141

Query: 168 TREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
              I  RL   P+   E +++ LDQ IND G  +D   A++   + +  + ++ +E+  +
Sbjct: 142 ELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYSALALAEARKPQIIEEMADI 201

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL--SSNKKLTPQAIQVFNNRMRA 283
           T GL ++     +L  WL  E G    DL   T  +V+  +    + P+AI+V   R+ +
Sbjct: 202 T-GL-NNPNSPAQLTPWL-KERGYPFSDLRSDTVNKVIREADENGVDPEAIRVLQMRLNS 258

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD--Q 341
           +++++ K  T+++A   DGR R +LQF GASRT RW+G     QNLPR  +  E++    
Sbjct: 259 AKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRIQTQNLPRTPKLIEDVTDLS 318

Query: 342 IITHLPTSITSDP------DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           I+  +      D       +P+  +  C+RS  I + G K +VADL+ IE+ V+ W+   
Sbjct: 319 IVNKMIHQRDLDALTLYVGEPMDALVGCIRSAFIPTPGHKFIVADLSSIESVVIGWLTDC 378

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +W +       DLY +  A   ++ P + TK  R+  K   L  GY+ G     +    T
Sbjct: 379 KWFMNTLAAKHDLYRSFAAHWLHL-PYEETKPHRSKAKPATLGAGYRLGGGHMDENGKKT 437

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL                 W  AEN    M +   E +++             A+R    
Sbjct: 438 GL-----------------WGYAENMGVHMTQKEAEESVQ-------------AFRDLCP 467

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----- 570
            +   W +L  A  + I   +A++         + ++  K  L + LPSGR + Y     
Sbjct: 468 EIVRAWYDLENAVFKVIRTRQAVVWG------CLIIEYTKPFLTIRLPSGRKMYYFRPRL 521

Query: 571 --------RDVGNNRSYLNTTTR----------QLTREYTYGGKLTENIVQAVSRDILAE 612
                   +       Y  T  +          +  + Y++GGKL ENIVQA++RD+LAE
Sbjct: 522 VERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSHGGKLVENIVQALARDVLAE 581

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
           G+  A + G+ IV+ +HDEIV E P+        L   M +   WA+GLPL A G+E   
Sbjct: 582 GLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAAELPWAEGLPLGAAGWEGYF 641

Query: 673 YRK 675
           YRK
Sbjct: 642 YRK 644


>gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 646

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 217/713 (30%), Positives = 329/713 (46%), Gaps = 106/713 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L+K G+ +Y E  D  +ILF +  D   V++ D      +P+ + 
Sbjct: 1   MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
           +ALE+  VT  A N+ FER  L          +     W C++V +   GLP +L+ VG 
Sbjct: 61  DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGKELI  FC       +     RN P+H  E W  F  Y   DV    +
Sbjct: 121 VLGLEKQKLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAEMQ 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  RL+  P+     + ++LDQ INDRG  VD+       +I +V R  L  +++ LT  
Sbjct: 181 IQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQVLTS- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSA 287
            +++   + ++K WL  + G+     TET  ++ +++     P  + ++   R + ++S+
Sbjct: 240 -LTNPNSVVQMKGWLS-DNGIE----TETLGKKAVAALIDEVPDEMSEILALRQKLAKSS 293

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SR 334
           V K   +  ++  DGR+RG  QF GA+RTGR++G +   QNLP+              S 
Sbjct: 294 VRKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSG 353

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            ++ LD +   +P ++          S  +R+  I +  +  +VAD + IEARV+AW AG
Sbjct: 354 DYDSLDLLYDDIPDTL----------SQLIRTAFIPTVNESFIVADFSAIEARVIAWFAG 403

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           E W+   F  G D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A + M 
Sbjct: 404 ESWRADVFAKGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG 463

Query: 453 S-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           +   GL                            +E  PE              +  AWR
Sbjct: 464 ALEMGL---------------------------AEEELPE--------------LVSAWR 482

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  +   W ++  A +      KAI ++       V+       L + LPSGR L Y 
Sbjct: 483 CSNPNIVRFWWDVDSAVK------KAIKSKTSTATHGVHFSCRSGMLFITLPSGRVLSYV 536

Query: 572 D--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              +G N+      +Y    +T++  R  +YG K  ENIVQA SRDIL   M   T    
Sbjct: 537 KPCMGENKFGGESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAM--KTLRCC 594

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV  VHDEI+ E       +A  +   M   P WA+GL L+A+GYE + Y+K
Sbjct: 595 SIVAHVHDEIIIEADPRMSLDA--ICEQMGRTPPWAEGLLLRADGYECQFYKK 645


>gi|332522757|ref|ZP_08399009.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332314021|gb|EGJ27006.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 653

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 219/705 (31%), Positives = 334/705 (47%), Gaps = 91/705 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDC-VHDPVMPQVLKEA 60
           L ID ET   IDL K G+ +YAED    ++LFA   D+ PV ++D  +    +PQ + E 
Sbjct: 6   LSIDIETYCEIDLRKSGVYRYAEDESFELLLFAVSVDNGPVTVYDLDLTKEKLPQDILET 65

Query: 61  LENTDVTIVAHNSYFERTVLKAC---FNLDI-------PIHRWICTLVLARSNGLPSALK 110
           L +  V   A N+ FER  L      ++ D+       P+  W C+++ +   GLP +L+
Sbjct: 66  LVDNSVIKWAFNASFERICLSNWLKKYHPDLLLDGFLSPVS-WRCSMIWSAYLGLPLSLE 124

Query: 111 AVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVT 166
            VG  LKL  QKM EG +LI  FC   K         RN P+H    W  F +Y + DV 
Sbjct: 125 GVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHASNKWSTFIDYNRRDVE 184

Query: 167 VTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V   I +R++  P+ S     ++ DQ IND G  +DV       +I    + K+  EL++
Sbjct: 185 VELAIKERVKNFPVPSFVWNEYHQDQIINDHGIGIDVDFVKAALKIDGESKAKIQAELKA 244

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           LT GL + +  L+ + +WL  E G+  + L +   + +L +  + T Q +++   R +A+
Sbjct: 245 LT-GLENPNSVLQMI-SWL-REHGVATDSLDKNAVKELLKTVDETTAQVLKL---RQQAA 298

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS--HEELDQI 342
           +S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+       E  D  
Sbjct: 299 KSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARDLF 358

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
            T    S     D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K F
Sbjct: 359 RTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVF 418

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNL 459
           E G+D+Y  + ++ F V   +  ++   R  GK+ ELA GY G   A + M +   GL+ 
Sbjct: 419 EQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLSK 478

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                LV +                                         WR  +  +  
Sbjct: 479 EELQPLVNS-----------------------------------------WRLANPNIVL 497

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR 577
            W ++  A +  +   K +I      +     +     L + LPSGR L Y    +G+N+
Sbjct: 498 YWWDVDNAVKTAV---KELIPTSTHGIQF---EVKSGILFITLPSGRKLAYIKPRIGDNQ 551

Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                 +Y  + T ++  R  +YG K  ENIVQA+SRDILA  M       + IV  VHD
Sbjct: 552 FGGESVTYEGSGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLKD--FRIVGHVHD 609

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           EI+ E   +   N   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 610 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECFFYQK 652


>gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens
           FD-1]
          Length = 654

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 215/725 (29%), Positives = 333/725 (45%), Gaps = 122/725 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+++CG+ +YAE     ++L ++  D  PV   D      +P  + 
Sbjct: 1   MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP--------------IHRWICTLVLARSNG 104
            AL +  V   A N  FER  L      + P                 W C ++ +R  G
Sbjct: 61  SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFC----KGETHECLYDRNKPNHREAWRLFGEY 160
           + S+L  +G+ L+L  +K++EGK+LI  FC      + +   YD  K +  + W+ F EY
Sbjct: 121 MMSSLDDMGKLLRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYD--KSDAPKKWKEFIEY 178

Query: 161 CKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + DV V  +I + L   P+     E +Y+DQ INDRG  VD   A    ++    + +L
Sbjct: 179 NRRDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKEL 238

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +L+ LT   + +     ++K WL +  G+  + L + +   +L+S      + + ++ 
Sbjct: 239 FPKLKELTR--LDNPNSPAQMKDWL-MRQGIEADSLDKKSMPLLLASAPDDVKEVLMLYQ 295

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              + S+S+V K +T++ A   DGR RG   F GA+RTGR++G +   QNLP+       
Sbjct: 296 ---QLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQ-----NH 347

Query: 339 LDQIITHLPTSITSDPDPLQ--------IISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           LD +        + D D ++        ++S  +R+  I  EGKK VVAD + IEARV++
Sbjct: 348 LDNLAETKWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVIS 407

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAF 448
           W+AGE W+++AF  GED+Y    A+ F V   +  V    R  GK+ ELA GY G   A 
Sbjct: 408 WLAGETWRMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAI 467

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
           + M  T  LNL                           ++     +ED            
Sbjct: 468 KAMGGTE-LNLT--------------------------DDELYSLVED------------ 488

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            WR+    + +LW+++     + I +  ++   + +         +   L + LPSGR L
Sbjct: 489 -WRKTSPNIVKLWSDVQSVAVKVITDQSSMTFGRLK------FSYEIGILFIELPSGRRL 541

Query: 569 V-----------------YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                             Y  VG+N+ +L        R  TYG KL ENI Q ++RD+L 
Sbjct: 542 AYVRPKVEKDDNGKTIITYEGVGDNKKWL--------RLETYGAKLVENITQGIARDLLL 593

Query: 612 EGMMNATKAGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
             M  A     DIV  VHDE++ E  PDT       + HLM   P WA+GL L+A+GYE 
Sbjct: 594 HSM--AAMKDMDIVGHVHDEVIVECDPDT---TVVQVCHLMEQTPDWAEGLLLRADGYEC 648

Query: 671 KRYRK 675
           + Y K
Sbjct: 649 EFYMK 653


>gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
 gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
          Length = 646

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 211/712 (29%), Positives = 326/712 (45%), Gaps = 104/712 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L K G+ +Y E  +  ++LFA+  D   V++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALEN  V   A N+ FER  L           +    W C+++ A + GLP +L+ VG 
Sbjct: 61  LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN+P H  + W +F +Y   DV     
Sbjct: 121 VLGLEKQKLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I +RL   P+ ++  + +++DQ INDRG  +D+ L     ++    RT+L + ++ +T  
Sbjct: 181 IQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKEITE- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL  + GL  + L +     +L   K  +P+  QV   R + ++S+V
Sbjct: 240 -LENPNSVQQMKAWLS-DNGLETDTLGKKAVTELL---KSASPKLSQVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SRS 335
            K   + + + +DGR RG  QF GA+RTGR+SG     QNLP+              S +
Sbjct: 295 RKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSGN 354

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
            E +  +   +P ++          S  +R+  I  EG + +VAD + IEARV+AW AGE
Sbjct: 355 FEAVKLLYEDVPDTL----------SQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGE 404

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           +W+ + F  G D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A + M +
Sbjct: 405 KWRQEVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA 464

Query: 454 -TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              GL       LV                                          AWRQ
Sbjct: 465 LDMGLTEEELPPLV-----------------------------------------DAWRQ 483

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-- 570
            +  + + W  +  A  + ++              L +  +    L + LPSGR L Y  
Sbjct: 484 SNPNIVKFWWNVDHAVMEAVK-----FKHTTSSYGLTFSCRS-GMLFITLPSGRKLAYVK 537

Query: 571 RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
             +G N+      +Y     T++  R  +YG K  ENIVQA +RDIL   M   T     
Sbjct: 538 PKLGTNKFGGQCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAM--KTLRCCS 595

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           IV+ +HDE+V E        A  +   M   P WAKGL L+A+GY +  Y+K
Sbjct: 596 IVMHIHDEVVIEADPRMSLEA--VCEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
 gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
          Length = 656

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 212/714 (29%), Positives = 320/714 (44%), Gaps = 98/714 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +D+ K G+ KY E     ++LFA+ +D   V + D      +P  + 
Sbjct: 1   MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L N +V   A+N+ FE T L        P  +W CT++     G P+ L  +G AL +
Sbjct: 61  SDLNNPEVIKHAYNASFEITGLNRYGYATSP-EQWRCTMLHGLYLGYPAGLAFLGAALGI 119

Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               +K+  GK LI  FC   K         RN P H  + W LF EY   DV    E +
Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+    Q+ W +D  +N RG  +D+ L      I D  +T+L ++   +T    
Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITGLTN 239

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +SR   +L TW+   + L LE LT+ T    L   +    Q  +V + R   ++S++ K
Sbjct: 240 PNSR--NQLLTWINDNSDLKLEKLTKETVAESLQIAED---QVAEVLHIRRALAKSSISK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSHE 337
             ++  A+ +DGR+RG LQF GA+RTGRW+G +   QNLP               + +  
Sbjct: 295 YESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHDVPVAMDTAIRLVKNGNAR 354

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            +  +  H+ TS          +S  +R+  +A EG  L V+D + IEARVL+W+A E+W
Sbjct: 355 GVKLMYGHISTS----------LSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKW 404

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   F  G D+Y  + +  F V   +  +    R  GKV ELALGYQGG  A   M +  
Sbjct: 405 RQDVFAKGGDIYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMGA-- 462

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                        +++   E  + D+            WR  + 
Sbjct: 463 -----------------------------LKQGLTEDELPDIV---------HRWRGANP 484

Query: 516 RVSELWNELHQAFEQTIENGKAIIARK----RRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           R+   W ++  A    + + + +         R+  L+Y     + L + LPSGR L Y 
Sbjct: 485 RICGFWYDVDGAALSVMSDARPVGLPHGILISRECNLLY---GYDYLTIRLPSGRKLYYP 541

Query: 572 DVGNNRS--------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
               N +        Y      + +   TYGGKL ENI QA++RD LA  +    KAGY 
Sbjct: 542 QPYINENQFGKPALHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYK 601

Query: 624 IVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            ++ +HDE+V E P     E     +  +M +   WA GL L A+G+ S  Y K
Sbjct: 602 PLMHIHDEVVLEVPKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655


>gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 643

 Score =  266 bits (680), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 221/710 (31%), Positives = 318/710 (44%), Gaps = 103/710 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S ID+ K G  +YA  E   ++LFA+ FD   V++ D  +   +P  + 
Sbjct: 1   MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL++ +V   A+N+ FE   L  C  +  P+ +W CT+V A    LP+ L   GEAL +
Sbjct: 61  TALQDMEVIKHAYNAAFEWYCLN-CAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119

Query: 119 SSQKMEE--GKELIARFCKGETHECLYDRNKPNHREA--WRLFGEYCKGDVTVTREIFKR 174
           +  K +   GK+LI  FC            KP   +A  W+ F EY + DV    EI  R
Sbjct: 120 AEDKKKSAVGKQLIRYFCV-----------KPYKPDAVKWKAFKEYNRQDVVSEMEIENR 168

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+   E E W  D  +N  G  VD  L +   +I +    +L  E   LT   + +
Sbjct: 169 LSGFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLTQ--LEN 226

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  W+  + G  LE+  + T +  L  +  L  +  +V   R +  +++V K  
Sbjct: 227 PNSPTQLLNWVNAQ-GYPLENTQKATIESALKEDLPLKVR--RVLEIRQQLGKTSVKKYE 283

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR----PSRSHEEL--DQIITHL 346
            +   +    R+RG  QF GAS+TGR+SG +   QNLPR    P     E    Q    L
Sbjct: 284 AMTNTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYLEPLAETRECVKRQDYETL 343

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD L   S  +R+  I S G + VVAD + IEARV+AW+A E W  + F T  
Sbjct: 344 KLLFDSIPDTL---SQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHG 400

Query: 407 DLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLN 460
            +Y  T ++ F+V   ++ K       R  GKV  LALGYQGG  A   M +   GL+  
Sbjct: 401 KIYEATASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMGALKMGLS-- 458

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                    +E  PE              +   WR  + R+  L
Sbjct: 459 -------------------------EEELPE--------------IVTRWRAANQRIVAL 479

Query: 521 WNELHQAFEQTIENGKA-----IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----- 570
           W+ +     +T+ +G+A     +I R  +D     +K     L + LPS R L Y     
Sbjct: 480 WSAVGSYALRTVRDGRARQVNGLIFRMEQD-----LKHGLRFLTIELPSKRKLFYCKPYI 534

Query: 571 --RDVGNNRSYL---NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                G    Y    N TT++     T+GGKL ENIVQ ++RD L E +   T  GY IV
Sbjct: 535 GLNQFGGESLYFYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIV 594

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             VHDE++ +     +     L  +M     WAKGL LK  G+  + Y+K
Sbjct: 595 FHVHDEVIVDA--GMDLTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642


>gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 654

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 215/708 (30%), Positives = 319/708 (45%), Gaps = 88/708 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET SP D++  G+ KY+E  +  ++LF++ +    V + D      +P  + 
Sbjct: 1   MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L+  +V   A+N+ FE T L         + +W CT++     G P  L  +G+AL L
Sbjct: 60  LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118

Query: 119 SSQKMEE--GKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           +  KM++  G  LI  F   CK         RN P H  + W  +  Y K DV    E +
Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+  + ++ W +D  +N  G  +D  L      I +  +  L +E   LT GL 
Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELT-GL- 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           S+     +L  WL   T L LE LT+ +    ++    L  + + +   R + ++S+V K
Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVAAAMTDADDLAKKVLTI---RKKLAKSSVSK 293

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A   DGRLRGTLQF GA+RTGRW+G +   QNLPR   ++ +  + +      +
Sbjct: 294 YEMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRV 353

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  D    +S  +R+ +IA EG  L VAD + IEARV+AW++GE W+ K F  G D
Sbjct: 354 GLGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGD 413

Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + +  F V   +  V    R  GKV ELALGYQGG  A + M +   GL      +
Sbjct: 414 IYCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMGALDMGLTEEELPN 473

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           +V                                           WRQ    + + W  +
Sbjct: 474 IVGL-----------------------------------------WRQASPNIVKFWYTV 492

Query: 525 HQAFEQTIENGKAIIARK----RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NN- 576
            +A   T+  G  +        R +V   Y  +    + + LPSGR L Y D     NN 
Sbjct: 493 EKAAVYTVTTGNPMTLDHGITFRLEVDPFYGYR---YMTIELPSGRKLFYPDPHIKLNNF 549

Query: 577 -------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                  ++ LN        E TYGGKL ENI QAV+RD LA  +M  +  G   ++ +H
Sbjct: 550 DKEAVHFKTQLNNA---WVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIH 606

Query: 630 DEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE V E P  + DE+   +        P WA+GL L A G+ +  Y K
Sbjct: 607 DEAVIEVPKDEADEYLDIVEKTFALPIP-WAEGLALTAAGFTNDYYMK 653


>gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont
           phage 1]
          Length = 415

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/418 (37%), Positives = 234/418 (55%), Gaps = 20/418 (4%)

Query: 164 DVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           D+  TREI++ L    ++  E  LW LDQ IN RG C+DV LA +    V+ E+ +L   
Sbjct: 3   DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
            + LT   V ++   + L   +    G+ L D+  +T QR ++ +  + P   ++ + R+
Sbjct: 63  TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRIN-DPDIPPALRELLSIRL 121

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           ++ R++  K   L++++++DGRLRGT QF GASRTGRW+G +F P NLPRP+     +D 
Sbjct: 122 QSCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDN 181

Query: 342 IITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            I  L      +  D D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK
Sbjct: 182 GIEALKAGCAELICD-DIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWK 240

Query: 399 LKAFE-----TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           + AF       G+DLY   YAR+FN+ P  VTK QR IGKVMEL LGY GG  AF   A 
Sbjct: 241 VNAFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFAL 300

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L+L   A+    N       +A ++ +   E    + +      T C+ +K+ WR  
Sbjct: 301 AYSLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNA 359

Query: 514 HSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           H++    W ++  A +Q I++ G A   RK      + +++DK+ L + LPSGRSL Y
Sbjct: 360 HTQTVSFWYDIEDAVKQAIQSPGVAFKCRK------LSVRRDKSWLRICLPSGRSLCY 411


>gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
 gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
          Length = 538

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 274/594 (46%), Gaps = 84/594 (14%)

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNHRE-AWRLFGEYCKG 163
           +L AVG AL L  QK   GK LI +FC   T   L     RN P+    +W  F +Y + 
Sbjct: 2   SLDAVGAALDLDVQKDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYNQR 61

Query: 164 DVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           DV V   I  RL   P+   E + + LDQ IND G  +D  LA     + D  R      
Sbjct: 62  DVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATLAR 121

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
              LT GL + +  ++ LK WL    G  +  L +   +  L S    T +  +V   R 
Sbjct: 122 ARELT-GLENPNSPIQ-LKEWLTTH-GCEMSSLAKADVEAALESA---TGKVKEVLELRG 175

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++S+V K   +     +DGR RG +QF GA RTGR++G +   QNLPR      +LDQ
Sbjct: 176 DLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPR--NYLPDLDQ 233

Query: 342 IIT--------HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             T         L     S PD L   S  +R+  I S G + +VAD + IEARV+AW+A
Sbjct: 234 ARTLTRQRNLDALELLYDSVPDTL---SQLIRTAFIPSAGCRFIVADYSAIEARVIAWLA 290

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQK 450
           GE   L AF  G+DLY  T +R F V P +   +  + R  GK+  LA GY G   A + 
Sbjct: 291 GETSTLAAFRDGKDLYCETASRMFGV-PVEKHGINAELRQKGKIATLACGYNGSVGALKA 349

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           M +   L +    H +K                                      +  AW
Sbjct: 350 MGA---LRMGLAEHELKP-------------------------------------IVDAW 369

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R  +  +  LW ++ QA    I   +A+  R  R         +   L + LPSGR L Y
Sbjct: 370 RAANPNIVRLWADVEQAALDAITTRQAVRLRNLR------FTAESGILFITLPSGRRLAY 423

Query: 571 --RDVGNNR------SYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
               +G NR      +Y   TT R+  R  TYGGKL ENIVQAV+RD+L   M    +AG
Sbjct: 424 VKPQLGENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAG 483

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + IV+ VHDEIV + P+   F  +    LMT+ P WA GLPL A+GYE   YRK
Sbjct: 484 HKIVMHVHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537


>gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 662

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 218/723 (30%), Positives = 325/723 (44%), Gaps = 110/723 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M T+ ID ET S ++L KCG+ KYAE     ++LF +  D   V++ D      +P  + 
Sbjct: 1   MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKAC----------FNLDIPIHR----------WICTLV 98
           +AL +  VT  A N+ FER  L             F+   P+ R          W C+++
Sbjct: 61  DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAW 154
            +   GLP +L+  G  LKL SQKM+EGK+LI  FC   K         RN P H  + W
Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQKMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPDKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            LF  Y K DV V   I +RL+  P+     + ++LDQ INDRG  +D  LA     I  
Sbjct: 181 TLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVIDA 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R  L   L+  T GL + +  ++ +  WL  + G+  + L +   Q +L + ++    
Sbjct: 241 RSRDSLMAVLKGKT-GLENPNSVIQMI-GWL-EQHGMKTDSLGKKQVQELLKTAEEPLRS 297

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR- 331
            + +   R + ++S+V K   +      D R RG  QF GA+RTGR++G     QNLP+ 
Sbjct: 298 VLLL---RQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354

Query: 332 --PSRSH-EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
             P  +   EL +   +    +  D  P  ++S  +R+  +  +G K VV+D + IEARV
Sbjct: 355 HLPDLAEARELVRQGNYEALELLYDSIP-DVLSQLIRTAFVPRKGMKFVVSDFSAIEARV 413

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAK 446
           L+W+AGE W+L  F    D+Y  + +  F V   +  V    R  GK+ ELALGY G   
Sbjct: 414 LSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTG 473

Query: 447 AFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           A + M +   GL  N    LV++                                     
Sbjct: 474 ALKAMGALDMGLTENELYPLVQS------------------------------------- 496

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL----VYMKKDKNNLILM 561
               WR  +  + + W ++    +  I          +  +P+    +        L + 
Sbjct: 497 ----WRSANPHIVDFWWQVDATVKTAI----------KEQIPMRAGCIRFLCQSGMLFIQ 542

Query: 562 LPSGRSLVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAE 612
           LPSGR L Y    +G NR      +Y     T++  R  +YG K  ENIVQ +SRDIL  
Sbjct: 543 LPSGRRLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCY 602

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
            M         IV  VHDE++ E       +A  +   M   P WA+GL L+A+GYE + 
Sbjct: 603 AMQTLRCCA--IVGHVHDELIIECSRDASVDA--ICEQMGRTPPWAEGLLLRADGYECEF 658

Query: 673 YRK 675
           Y+K
Sbjct: 659 YQK 661


>gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23]
 gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23]
          Length = 545

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 185/599 (30%), Positives = 282/599 (47%), Gaps = 89/599 (14%)

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGE 159
           GLP++L  + +AL+L+ +K  EGK LI  FC   K         RN P H  E W  F E
Sbjct: 8   GLPASLDMMSKALRLAQEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIE 67

Query: 160 YCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           YC+ DV V R I K++   P    EQ  W LDQ I D+G  +DV L        +  +  
Sbjct: 68  YCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQAS 127

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           L ++ + LT GL  +   +++LK WL  + G  +  L + +   +L+ ++ L     ++ 
Sbjct: 128 LSKKAKGLT-GL-ENPNSVQQLKDWL-ADMGYPVSSLNKDSVSELLA-DEDLDEDVREML 183

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR------ 331
             R   S++++ K   +  A   DGR+RG LQF GA+RTGRW+G +   QNLPR      
Sbjct: 184 LLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDI 243

Query: 332 -------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
                   +  +E  + + +++P           ++S  +R+  IA +G    + D + I
Sbjct: 244 AEVRKDLKAGDYEAFEMMYSNVP----------DVLSQLIRTAFIAEDGYTFDITDFSAI 293

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           EARV+AW+AGEQW+L  F +   +Y  + ++ F++   +V K+ R  GKV ELALGY GG
Sbjct: 294 EARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGG 353

Query: 445 AKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             A   M +   GL  N    +V                                     
Sbjct: 354 VNALIAMGALEMGLKENELQGIV------------------------------------- 376

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                AWR+    ++ LW  + +  +  I   K   ++K + +   Y   +   L + LP
Sbjct: 377 ----DAWRKASPAITSLWRGVEKHAKLAISTRK---SQKYKGLTFYY---EAGILFIKLP 426

Query: 564 SGRSLVY-------RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           SGR+L Y          G    Y   T +   ++YTYGGKL ENIVQA++RD LA  +  
Sbjct: 427 SGRNLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRR 486

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               G D V+ VHDE + E  ++ E +   L  ++    SWA GLPL+ +G+ S  Y K
Sbjct: 487 IEDTGIDTVMHVHDEAITEVQES-ESSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544


>gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
 gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
          Length = 661

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 214/728 (29%), Positives = 326/728 (44%), Gaps = 122/728 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S ID++KCG  KYAE  +  ++LF    D+ PV ++D      +P  + 
Sbjct: 2   MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH------------------RWICTLVLA 100
            AL + ++   A N+ FER  L        P +                   W CT++ +
Sbjct: 62  AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRL 156
              GLP +L+ VG  LKL  QKM+EGK+LI  FC   K         RN P H  + W  
Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQKMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKWET 181

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F  Y + DV V   I +RL   P+       +++DQ IND G  +D+ +    N I   E
Sbjct: 182 FKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVE--NAIAFDE 239

Query: 215 RTK--LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
           R+K  L   ++++T   + +   + ++K WL  + G+  E L +     ++        +
Sbjct: 240 RSKSALITAMKNITN--LDNPNSVVQMKQWLS-DNGVETESLGKKEVAGLIKETDGDISK 296

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A+++   R++ ++S+V K   +  A+  DGR  G  QF GA+R+GRW+G +   QNLP+ 
Sbjct: 297 ALKL---RLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQN 353

Query: 333 SRS-------------HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
             S             ++ LD +   +P ++          S  +R+  IA  G K +V+
Sbjct: 354 HMSDLTEARELVRTGDYDTLDMLYDDIPDTL----------SQLIRTAFIARPGYKFIVS 403

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMEL 437
           D + IEARVLA +AGE W+ K F  G+D+Y  + ++ F V   +  +    R  GK+ EL
Sbjct: 404 DYSAIEARVLAHLAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAEL 463

Query: 438 ALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
           ALGY G   A + M +   GL       LV +                            
Sbjct: 464 ALGYGGSVGALKSMGALEMGLTEEELQPLVDS---------------------------- 495

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                        WR  +  ++  W  +  A +  I   K  I  +   +   Y      
Sbjct: 496 -------------WRSSNPMITAFWWNVDNAIKTAI---KMHIPTEVNGIHFCY---KSG 536

Query: 557 NLILMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSR 607
            L++  PSGR L Y    +G NR      +Y    +T++  R  +YG K  ENIVQAVSR
Sbjct: 537 MLLIKRPSGRVLSYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSR 596

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           DIL   M   T     IV  VHDE++ E     + N   +   M  +  W  G+ L+A+G
Sbjct: 597 DILCNAM--KTLRHCFIVGHVHDELIIECSSGVDLNE--ICKQMGRSLDWMPGILLRADG 652

Query: 668 YESKRYRK 675
           YE+  Y+K
Sbjct: 653 YETNFYKK 660


>gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
 gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 211/720 (29%), Positives = 335/720 (46%), Gaps = 106/720 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + T+ ID ET S +DL KCG+ KY  ++   ++LF +  D   V + D      +P  + 
Sbjct: 4   IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63

Query: 59  EALENTDVTIVAHNSYFERTVL---------KACFNLDIP---------IHRWICTLVLA 100
            AL + ++T  A N+ FER  L         K   +  IP            W C++V +
Sbjct: 64  MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHRE-AWRL 156
              GLP  L   G  L L  QK+ EGKELI  FC   K         RN P H    W +
Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQKLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKWEM 183

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F +Y K DV V   I  +L   P+ +   E ++LDQ INDRG  +D+ +    N I   E
Sbjct: 184 FKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDV--VTNAIAFDE 241

Query: 215 RTK--LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
           ++K  L  +++ +T GL  +   ++++K WL    GL ++ L +     VL++     P+
Sbjct: 242 KSKAVLADKMQEMT-GL-ENPNSVQQMKQWLSC-NGLEMDSLGKKEVAAVLNT----APE 294

Query: 273 AIQ-VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            ++ V   R + ++S+V K   +  A+ SDGR RG   F GA+R+GRW+G +   QNLP+
Sbjct: 295 PLKTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQ 354

Query: 332 PSRSH-EELDQII---THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
              S  EE   ++    +   ++  D  P   +S  +R+  +  +G + +V+D + IEAR
Sbjct: 355 NHMSDLEEARSLVKQGNYEAMNMLYDDVP-DTLSQLIRTAFVPRKGMEFIVSDFSAIEAR 413

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGA 445
           VL+ +AGE+W+   F +G D+Y  + ++ F V   +  V    R  GK+ ELALGY G  
Sbjct: 414 VLSHLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSV 473

Query: 446 KAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
            A + M +   GL  +    LV                                      
Sbjct: 474 GALKSMGALDMGLEEDELKPLVDM------------------------------------ 497

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                WR+ +  + +LW ++ +A +      KA+  R+   +  +        L + LPS
Sbjct: 498 -----WREANPNIVKLWWDVDRAVK------KAVKQREPSSIGSITFSYKSGMLFIGLPS 546

Query: 565 GRSLVY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
           GR L Y    +G N+    +        T++  R  +YG K  ENIVQA+SRDIL   + 
Sbjct: 547 GRCLSYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIR 606

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +     I   VHDE++ E   +   +  ++   M   P W +G+ L+A+GYE++ Y+K
Sbjct: 607 TLSHCF--ICGHVHDELIIEC--SKSVSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662


>gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul]
 gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul]
          Length = 693

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 209/729 (28%), Positives = 333/729 (45%), Gaps = 102/729 (13%)

Query: 6   IDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +D+E+RS  DL  CG+  Y+  E   +++ ++ F+   V+ W+ + D   P  ++EALE+
Sbjct: 7   LDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWE-IRDGKFPAEVREALED 65

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            +V   A N+ FER + +    ++ P   W CT+  A        L+ VG  L L   K+
Sbjct: 66  PNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQDKV 125

Query: 124 E--EGKELIARFCKGE------THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +   GK+LI  F K +       H+ L  +  P     W  F  Y + DV     I + L
Sbjct: 126 KLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFE---WDDFLIYNQQDVIAEAAIDEWL 182

Query: 176 EPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            P  +  +E EL+ LDQ INDRG  VD+   ++   + D  + +L +++ ++T GL  + 
Sbjct: 183 APYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAIT-GL-ENP 240

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK---LTPQAIQVFNNRMRASRSAVLK 290
              ++LK W+    G   +DL + T ++VL+ +K    LT +  +V   RM+++R++V K
Sbjct: 241 NSPQQLKPWV-KARGYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVGK 299

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE---ELDQIITHLP 347
               V  +    RLR  LQF GA RT RW+G      NL R  ++ E   + D  +  + 
Sbjct: 300 YKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTVT 359

Query: 348 TSITSD---------PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +I +           +P+  ++ CVRS + A EG + V  DL+ IE  V+AW+A  Q  
Sbjct: 360 NAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPL 419

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L  F  G   Y     R + V   +VT   R + K   L  GY+ G          TGL 
Sbjct: 420 LNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL- 478

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                           W  AEN    M       ++             K +R+ +  V 
Sbjct: 479 ----------------WGYAENMGIDMSRQEAHDSV-------------KMYREAYPEVP 509

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571
           +LW +L  A  +TI+  KA+   +     +V        L+ +LPSGR + Y        
Sbjct: 510 QLWKDLEAAIIRTIKT-KAVTRVRYVSFEIV-----GEFLVAILPSGRRMYYHRPRIEKK 563

Query: 572 ---------------DVGNNRSY---------LNTTTRQLTREYTYGGKLTENIVQAVSR 607
                          + G+ ++Y          N   ++  R+ ++GGK+TEN+VQA++R
Sbjct: 564 KFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIAR 623

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           +IL  G+ NA K G +IVL VHDEIV      D      +L   MT+   W + +P+ A 
Sbjct: 624 EILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGAA 683

Query: 667 GYESKRYRK 675
           G+ +  YRK
Sbjct: 684 GWSAAFYRK 692


>gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 211/374 (56%), Gaps = 20/374 (5%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +    G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L++++++D
Sbjct: 63  HIASAFGITLPDMQASTLQRRIN-DPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358
           GRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D D +Q
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     N  P 
Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPG 300

Query: 474 EWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              +A    RW Q   E    + + E +F+   C+ +K+ WR  H +    W ++  A +
Sbjct: 301 VKREA---MRWYQKSVETDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAVK 355

Query: 530 QTIEN-GKAIIARK 542
           Q I++ G A   RK
Sbjct: 356 QAIQSPGIAFKCRK 369


>gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 212/371 (57%), Gaps = 14/371 (3%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +    G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L++++++D
Sbjct: 63  HIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358
           GRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D D +Q
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     +  P 
Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPG 300

Query: 474 EWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              +A ++ +   E    + + E +F+   C+ +K+ WR  H +    W ++  A +Q I
Sbjct: 301 VKREATSWYQKSVEKDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAVKQAI 358

Query: 533 EN-GKAIIARK 542
           ++ G A   RK
Sbjct: 359 QSPGIAFKCRK 369


>gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 212/371 (57%), Gaps = 14/371 (3%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +    G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L++++++D
Sbjct: 63  HIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358
           GRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D D +Q
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     +  P 
Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPG 300

Query: 474 EWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              +A ++ +   E    + + E +F+   C+ +K+ WR  H +    W ++  A +Q I
Sbjct: 301 VKREATSWYQKSVETDKTYGLSEKIFVN--CDSLKRMWRNAHPQTVSFWYDIEDAVKQAI 358

Query: 533 EN-GKAIIARK 542
           ++ G A   RK
Sbjct: 359 QSPGIAFKCRK 369


>gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/374 (39%), Positives = 211/374 (56%), Gaps = 20/374 (5%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +    G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L++++++D
Sbjct: 63  HIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358
           GRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D D +Q
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N  P 
Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPG 300

Query: 474 EWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              +A    RW Q   E    + + E +F+   C+ +K+ WR  H +    W ++  A +
Sbjct: 301 VKREA---MRWYQKSVETDKTYGLSEKIFV--TCDALKRMWRNAHPQTVSFWYDIEDAVK 355

Query: 530 QTIEN-GKAIIARK 542
           Q I++ G A   RK
Sbjct: 356 QAIQSPGIAFKCRK 369


>gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 328

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 143/335 (42%), Positives = 196/335 (58%), Gaps = 28/335 (8%)

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVT 411
           +Q+ S  +R C++A  GKKLVV+DL+ IE R+LAW+AGEQWKL AF      TG DLY  
Sbjct: 5   MQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPDLYKL 64

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
            YAR+FN++   VTK QR IGKVMEL LG+ GG  AF   A   GL+L   A     N  
Sbjct: 65  AYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAALPNIP 124

Query: 472 PEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            +   +A+    W  E+    A     E +FI  AC+ +K+ WR+ H    + W +L   
Sbjct: 125 RDVQREAKG---WYDESVKRKATYGLSERVFI--ACDSLKRLWRRAHPETCDFWYQL--- 176

Query: 528 FEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL-- 580
            E+T+   +  IA   + +   Y+K  +D   L + LPSGR+L Y        N +Y+  
Sbjct: 177 -ERTV---RTAIATPAKTLYCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGI 232

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++CE PDTD
Sbjct: 233 NSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTD 292

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++  + L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 293 DYTDAALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327


>gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 145/374 (38%), Positives = 210/374 (56%), Gaps = 20/374 (5%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L  
Sbjct: 3   ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +    G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L++++++D
Sbjct: 63  HIASAFGITLPDMQASTLQRRIN-DPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSAD 121

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358
           GRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D D +Q
Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N    
Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLG 300

Query: 474 EWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              +A    RW Q   E    + + E +F+   C+ +K+ WR  H +    W ++  A +
Sbjct: 301 VKREA---MRWYQKSVETDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAVK 355

Query: 530 QTIEN-GKAIIARK 542
           Q I++ G A   RK
Sbjct: 356 QAIQSPGIAFKCRK 369


>gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 560

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 195/620 (31%), Positives = 295/620 (47%), Gaps = 110/620 (17%)

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---------KGETHECLY 143
           W CT++ + + GLP +L++VG  L L  QK+ EGK LI  FC          G T     
Sbjct: 13  WHCTMIWSATLGLPMSLESVGAVLGLDKQKLTEGKNLIKYFCLPCNPTKVNGGRT----- 67

Query: 144 DRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVD 200
            RNK  H +E W LF  Y K DV V   I ++L   P+     + +YLDQTINDRG  +D
Sbjct: 68  -RNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQTINDRGIEID 126

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
                +  ++    +T L  EL+ +T GL + +  L+ +++WL  E GL +E L +    
Sbjct: 127 SLFVESAIKLDQEVKTHLMSELKHVT-GLENPNSVLQ-MRSWL-KEHGLEMESLGKKEVA 183

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
           + L   K +  +  +V   R + ++S+V K   +  A   D R RG  +F GA+RTGR++
Sbjct: 184 KEL---KTVGKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFA 240

Query: 321 GCVFPPQNLPR-------PSRSH------EELDQIITHLPTSITSDPDPLQIISDCVRSC 367
           G +   QNLP+        +RS       E L+ +   +P ++          S  +R+ 
Sbjct: 241 GRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTL----------SQLIRTA 290

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VT 425
            I   G K +VAD + IEARVLAW+AGE+W+++ F  G+D+Y ++ ++ F+V   +  V 
Sbjct: 291 FIPRTGFKFIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVN 350

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
              R  GK+ ELALGY G   A + M +   GL       LV                  
Sbjct: 351 GHLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEELQPLV------------------ 392

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                   AWR+ +  V+ LW ++ +A +Q +      I+ +  
Sbjct: 393 -----------------------DAWRKSNPMVTTLWWDVDRAVKQCVHEH---ISVRTH 426

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVY--------RDVGNNRSYLNT-TTRQLTREYTYGG 595
           ++   Y       LI+ LPS R L Y        +  G + +Y    +T++  R  +YG 
Sbjct: 427 NIVFTY---KSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGP 483

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655
           K  ENI QA++RDIL   M   T   Y IV  VHDE + ET      +   +  LM   P
Sbjct: 484 KFVENITQAIARDILLYAMQ--TLKEYRIVAHVHDEAIIETDKN--VSVQSVCELMGRTP 539

Query: 656 SWAKGLPLKAEGYESKRYRK 675
            WA+GL L+A+GYE + Y+K
Sbjct: 540 PWAEGLVLRADGYECEFYKK 559


>gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5]
          Length = 773

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 210/365 (57%), Gaps = 25/365 (6%)

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
           G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L++++++DGRLRGT
Sbjct: 34  GITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGT 92

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCV 364
            QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D D +Q+ S  +
Sbjct: 93  KQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQLTSSAL 151

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNV 419
           R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY   YAR+FN+
Sbjct: 152 RGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNL 211

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
            P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     +  P    +A 
Sbjct: 212 LPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVKREAT 271

Query: 480 NFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-GKA 537
           ++ +   E    + + E +F+   C+ +K+ WR  H +    W ++  A +Q I++ G A
Sbjct: 272 SWYQKSVETDKTYGLSEKIFVN--CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPGIA 329

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLNTT--TRQLTREYT 592
              RK      + +++DK  L + LPSGRSL Y   R      +Y+ T   +R+  R  T
Sbjct: 330 FKCRK------LSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRKWERLKT 383

Query: 593 YGGKL 597
           YGGKL
Sbjct: 384 YGGKL 388



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 54/77 (70%)

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENI Q+ +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  WA
Sbjct: 696 ENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHWA 755

Query: 659 KGLPLKAEGYESKRYRK 675
             LPL A G+E+ RYRK
Sbjct: 756 WDLPLSANGFETYRYRK 772


>gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4]
          Length = 773

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 208/368 (56%), Gaps = 31/368 (8%)

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
           G+ L D+  +T QR ++ +  + P   ++ + R+++  ++  K   L++++++DGRLRGT
Sbjct: 34  GITLPDMQASTLQRRIN-DPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGT 92

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCV 364
            QF GASRTGRW+G VF P NLPRP+     +D  I  L      +  D D +Q+ S  +
Sbjct: 93  KQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQLTSSAL 151

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNV 419
           R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   YAR+FN+
Sbjct: 152 RGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNL 211

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
            P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N       +A 
Sbjct: 212 LPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGVKREA- 270

Query: 480 NFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN- 534
              RW Q   E    + + E +F+   C+ +K+ WR  H +    W ++  A +Q I++ 
Sbjct: 271 --MRWYQKSVETDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 326

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLNTT--TRQLTR 589
           G A   RK      + +++DK  L + LPSGRSL Y   R      +Y+ T   +R+  R
Sbjct: 327 GIAFKCRK------LSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRKWER 380

Query: 590 EYTYGGKL 597
             TYGGKL
Sbjct: 381 LKTYGGKL 388



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 54/77 (70%)

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENI Q+ +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  WA
Sbjct: 696 ENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 755

Query: 659 KGLPLKAEGYESKRYRK 675
             LPL A G+E+ RYRK
Sbjct: 756 WDLPLSANGFETYRYRK 772


>gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68]
          Length = 385

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 206/379 (54%), Gaps = 10/379 (2%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R +AS ++  K   L++ 
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRQQASTTSTSKYKALMKG 303

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 363

Query: 356 PLQIISDCVRSCVIASEGK 374
            +++ S  +R C+IA  GK
Sbjct: 364 IMELTSSALRGCIIAPTGK 382


>gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 153/457 (33%), Positives = 239/457 (52%), Gaps = 25/457 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L+N ++   A N+ FER  L       +    W C+ V + + GLP +L+ +G  L L
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT GL + 
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT-GLANP 239

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  L+ LK WL  + G+    L++ +  ++L +    T    QV   R   S+S+V K  
Sbjct: 240 NSPLQ-LKDWL-QQQGIKTNSLSKASVAQLLQTT---TGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH-----L 346
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    EE  +++       L
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   E
Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGY 441
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGY 448


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 151/421 (35%), Positives = 215/421 (51%), Gaps = 19/421 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 124

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++ RL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWN 184

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++ +  L     ++   R++AS ++  K   L++ 
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKEMLAIRLQASTTSTSKYKALMKG 303

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I   P +       L
Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGI-EAPNAAAKTLKCL 362

Query: 358 QIISDCVRSCVIAS----EGKKLVVADLAGIEARVLAWMAGEQWK------LKAFETGED 407
           QI S  V +    S       KL   D    EA     +    WK      LKAF  G  
Sbjct: 363 QIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRH 422

Query: 408 L 408
           L
Sbjct: 423 L 423


>gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e]
 gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e]
          Length = 461

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/451 (33%), Positives = 231/451 (51%), Gaps = 21/451 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EAL-----ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L A+
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 GEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTR 169
            E L +  S  K + GK LI RF K         R   + H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E++K++    + E E  + +LDQ INDRG+ VDVALA    + V   + +L +E +    
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+    L     + +  ++T   +L+ ++ L   A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLA-DEDLPDDARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ-IITHL 346
             K   L+   +SD R RG LQ+ GA RT RW+G  F PQNL R     +ELD+ I   L
Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G+K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVT---KDQRAIGKV 434
           D+Y  T  + F + P  +    KD R IGK 
Sbjct: 417 DIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447


>gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 234/457 (51%), Gaps = 25/457 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L + G  +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L       +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +       +  Q  + LT GL + 
Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLT-GLANP 239

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  L+ LK WL  + G+  + L + +  ++L +    T    QV   R   S+S+V K  
Sbjct: 240 NSPLQ-LKNWLH-QQGVETDSLAKASVAQLLQTT---TGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQII-----THL 346
            + +AM  DG + G LQF GA+RTGRW+G +   QNLPR S    EE   ++     T L
Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+G    VAD + +EARV+AW++GE+W+  AF   E
Sbjct: 355 AMLYESVPD---VLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGY 441
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGY 448


>gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3]
 gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3]
 gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5]
 gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12]
          Length = 1032

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/452 (33%), Positives = 230/452 (50%), Gaps = 23/452 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EAL-----ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L ++
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120

Query: 113 GEALKL--SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +  S  K + GK LI RF K         R     H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPLSSKEQE---LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           E++K++    + E E   LW LDQ INDRG+ VDVALA    + V   + +L +E +   
Sbjct: 181 EVYKKMPKWGNSEFEDRVLW-LDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKY 239

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G ++    L  L+    L     + +  ++T   +L+ ++ L   A  +   R+ A+ +
Sbjct: 240 GGSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLA-DEDLPDDARTIIEMRLGAAST 295

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ-IITH 345
           A  K   L+   +SD R RG LQ+ GA RT RW+G  F PQNL R     +ELD+ I   
Sbjct: 296 ASTKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAAL 355

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           L        D  ++ +  VRSC+I   G+K VVAD + +E R LAW+AGE+  L  F  G
Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415

Query: 406 EDLYVTTYARSFNVAPAQVT---KDQRAIGKV 434
            D+Y  T  + F + P  +    KD R IGK 
Sbjct: 416 LDIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 130/285 (45%), Gaps = 45/285 (15%)

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW--MQE-NHPEH 492
            EL LGY+GG  AF   A   GL+L   A  +        W        W  +QE   P H
Sbjct: 748  ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 807

Query: 493  AIE---------DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN------GKA 537
              E         D  +   C+ +K+ WR+ H      W +L       + N        A
Sbjct: 808  PGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAGA 867

Query: 538  IIARKRRDVPLVYMKKDKNN---------LILMLPSGRSLVYRDVG-------NNRSYLN 581
             + R       ++   + ++         L + LPSGR L Y  +G       +    +N
Sbjct: 868  HLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRIN 927

Query: 582  TTTR-------QLTRE----YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
            T  R       QLTR+    YT+GGK  ENIVQA+ RD+LA  M+N    GY IVL+VHD
Sbjct: 928  TNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVHD 987

Query: 631  EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E+VCETPDT ++  + L  LM + P WA G PL AEG E KRY K
Sbjct: 988  ELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032


>gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 362

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 196/343 (57%), Gaps = 8/343 (2%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +T  G   YAE V V+LFA+   D PV +WD      +P  L++A+ +
Sbjct: 6   LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIAD 64

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            D  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++ LP AL A+ E L +   K
Sbjct: 65  PDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQDK 124

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H   W+ F  Y   D+   RE++KRL   +
Sbjct: 125 AKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  EL  W+ DQ INDRG+CVD+ L H   + VD  + +L ++   +T G V ++   +
Sbjct: 185 YQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQRD 244

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            +   +    G+ L D+ ++T +R ++ +  L P   ++ + R++AS ++  K  TL+++
Sbjct: 245 AMIKHIVESYGVELPDMQKSTIERRIA-DPDLPPAVKELLHIRLQASATSTSKYKTLLKS 303

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
           ++SDGRLRGTLQF GASRTGRW+G +F PQNL R S S EE++
Sbjct: 304 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIE 346


>gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 971

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 240/477 (50%), Gaps = 41/477 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL +D ET S ++L KCG+ KYAE     ++LF +  D   V++ D      +P+ + 
Sbjct: 1   MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKAC----------FNLDIPIHR----------WICTLV 98
           +AL +  VT  A N+ FER  L             F    P+ +          W C++V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAW 154
            +   GLP +L+ VG  L L +QKM+EG+ELI  FC   K         RN P H  + W
Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALDKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQ--ELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F  Y K DV V   I +RL+     EQ  E ++LDQ INDRG  +D+ LA     +  
Sbjct: 181 NQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAMDA 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R  L   L+  T GL + +  L+ L  WL  + GL  + L +   + +L + ++    
Sbjct: 241 KSRESLMAALKEKT-GLENPNSVLQML-GWL-EDHGLKTDSLGKKQVKELLKTAQEPLRS 297

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR- 331
            +Q+   R + ++S+V K   +  A+  DGR RG  QF GA+RTGR +G     QNLP+ 
Sbjct: 298 VLQL---RQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQN 354

Query: 332 --PSRSH-EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
             P  S   EL +   +    +  D  P  ++S  +R+  +   G K VV+D + IEARV
Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIP-DVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQG 443
           ++WMAGE+WK  AF  G+D+Y +T ++ F V   +  V  + R  GK+ ELA   +G
Sbjct: 414 ISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACIAEG 470



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 19/177 (10%)

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           ++WR  +  + + W ++  A +  I+    +     R V    M      L + LPSGR 
Sbjct: 804 QSWRSANPHIVDFWWQVDGAVKTAIKQRIPVWVNNIRFVCQSGM------LFIELPSGRQ 857

Query: 568 LVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           L Y    +G N+      +Y     T++  R  +YG K  ENIVQ  +RDIL   M   T
Sbjct: 858 LSYVKPRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIVQGTARDILCYAMQ--T 915

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                IV  VHDE++ E   + E +   +   M+  P WA+GL L+A+GYE   Y+K
Sbjct: 916 LRCCAIVGHVHDELIIEC--SKEVSVDAICEQMSRTPPWAEGLVLRADGYECAFYQK 970


>gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterococcus sp. 7L76]
          Length = 545

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 226/449 (50%), Gaps = 52/449 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L +D ET S +DL+KCG+ KY+E  D  ++LFA+  D  PVE+ D   D  +P  + 
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +L +  V   A N+ FER  L     LD  +    W CT+V   + GLP +L  VG  L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHREA-WRLFGEYCKGDVT 166
            L+ QK+ EGK+LI  FC          G T      RN P+H    W  F  Y   DV 
Sbjct: 121 GLNKQKLTEGKDLIRYFCVPCNPTKVNGGRT------RNLPHHAPTKWSAFKTYNSRDVE 174

Query: 167 VTREIFKRLEP---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           V   I  +L     L S  +E W LDQ INDRG  +D        Q+ ++ +  L+Q+L+
Sbjct: 175 VEIAIQGKLSNFPVLDSVWKEYW-LDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQ 233

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT GL + +  L+ ++ WL L+ GL  E L +     +L   + +     QV   R + 
Sbjct: 234 ELT-GLENPNSVLQ-MRGWL-LDHGLETESLGKKAVDELLE--QPIDENLKQVLVLRQQL 288

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS-------- 335
           ++S+V K   +     SD R RG  QF GA+RTGR++G     QNLP+   S        
Sbjct: 289 AKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSL 348

Query: 336 -----HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
                 E L+ +  ++P           ++S+ +R+  +  EG K +V+D + IEARV+A
Sbjct: 349 VKQSNFEMLNILYGNVPN----------VLSELLRTAFVPREGMKFIVSDFSAIEARVIA 398

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           W++GE+W+ + F+ G D+Y  + ++ F V
Sbjct: 399 WLSGEKWRQEVFKNGGDIYCASASQMFGV 427


>gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1]
 gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1]
          Length = 1062

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 229/467 (49%), Gaps = 40/467 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           LF+D ET S +DL K G   YAE     +++  +  D+  V+ WDC   P MP+ L++AL
Sbjct: 7   LFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPRELRKAL 66

Query: 62  ENTD----VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
                     ++A+   F+R V++  + +D+P+ +   T+++A  + LP +L    + L 
Sbjct: 67  RQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDMQCQVLG 126

Query: 118 LSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + ++  K + GK LI RFCK         R  +  H E W  F  Y   D+   RE++ R
Sbjct: 127 VDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREVYWR 186

Query: 175 LEPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +    +  KE E+  +DQ INDRG+ VDV LA+   + V   + +L +E      G ++ 
Sbjct: 187 IPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERFGGKLTG 246

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  L  L+    +     + +  ++T   +L  +     +   +   R+ AS +A  K N
Sbjct: 247 NDFLPILRD---IAPAFTIHNAQKSTLNDLLE-DPDFPDEGKALIEMRLGASSTASTKYN 302

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS------------------- 333
            LV  +++DGR RG LQ+ GA RT RW+G  F PQNL R                     
Sbjct: 303 PLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESDVS 362

Query: 334 ---RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              RSH   + I + L  +     D  ++ +  VR C+I ++GKK VVAD + +E R LA
Sbjct: 363 FWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRGLA 422

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---KDQRAIGKV 434
           W+AGE+  L  F+ G D+Y  T  + F + P  +    KD R IGK 
Sbjct: 423 WVAGEKTALMVFKAGRDIYCETAGKMFGLDPDYIKANRKDLRQIGKA 469



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 137/293 (46%), Gaps = 53/293 (18%)

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH----PE 491
            EL LGY GG  AF + A   GL+L T A ++K       W  A+    + + N     P+
Sbjct: 770  ELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARINEAKRPPK 829

Query: 492  HAIED--------LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-GKA----- 537
               +D          +   C+ +K+ WR+ H +    W EL  A    I N GKA     
Sbjct: 830  PGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPGKAYWAGA 889

Query: 538  -----------IIARKRRDVPLVYMKKDKNN-----LILMLPSGRSLVY----------- 570
                       I+  K +  P    ++D  N     L + LPSGR + Y           
Sbjct: 890  NVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEI 949

Query: 571  -RDVGNNRSYL-------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              D G  R+         N TTRQ   +YTYGGKLTENIVQA+ RDILA  M     AGY
Sbjct: 950  DEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGY 1009

Query: 623  DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +IVL+VHDE++ E PDTD++    L  LM   P WAKG PL AEG    RYRK
Sbjct: 1010 EIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062


>gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 422

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 163/410 (39%), Positives = 206/410 (50%), Gaps = 59/410 (14%)

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASE 372
           TGRW+G +F P NLPRP+ S   +   I  +      +  D D + + S  +RSC+IA  
Sbjct: 21  TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFD-DVMALTSSALRSCLIAPT 79

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAF------------------------------ 402
            KKLVVADL+ IE RVLAW+AGE  KL AF                              
Sbjct: 80  HKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPIT 139

Query: 403 ----------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
                       G+D+Y   YA SF +AP  VTK+QR IGKV ELALGY GG  AF   A
Sbjct: 140 LQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFA 199

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWR 511
           +   ++L   A   +    P   ++A    +W + N  P   + D     AC+  K+AWR
Sbjct: 200 AMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWR 256

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             H  ++  W  L   F  T   G    A     + + Y    +  L L LPSGR L Y 
Sbjct: 257 NAHPAIAAFWQALQ--FAATDAIGHPETAHTCCGITVQY---SRAWLRLRLPSGRVLYYA 311

Query: 572 ----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
               D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IV
Sbjct: 312 APRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIV 371

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           LTVHDE++ E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 372 LTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 422

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 160/410 (39%), Positives = 205/410 (50%), Gaps = 59/410 (14%)

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASE 372
           TGRW+G +F P NLPRP+ S   +   I  +      +  D D + + S  +RSC+IA  
Sbjct: 21  TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFD-DVMALTSSALRSCLIAPT 79

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFE----------------------------- 403
            KKLVVADL+ IE RVLAW+AGE  KL AF                              
Sbjct: 80  HKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPIT 139

Query: 404 -----------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
                       G+D+Y   YA SF +AP  VTK QR IGKV ELALGY GG  AF   A
Sbjct: 140 LQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFA 199

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWR 511
           +   ++L   A   +    P   ++A    +W + N  P   + D     AC+  K+AWR
Sbjct: 200 AMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWR 256

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             H  ++  W  L  A    I + +            + M+  +  L + LPSGR L Y 
Sbjct: 257 NAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYA 311

Query: 572 ----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
               D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IV
Sbjct: 312 APRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIV 371

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           LTVHDE++ E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 372 LTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 470

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 164/525 (31%), Positives = 253/525 (48%), Gaps = 76/525 (14%)

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           EI ++LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT 
Sbjct: 2   EITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT- 60

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           GL + +  L+ LK WL  + G   + L++ +  ++L +    T +  Q+   R   S+S+
Sbjct: 61  GLANPNSPLQ-LKDWL-QQQGAKTDSLSKASVAQLLQTT---TGKVHQILALRQLLSKSS 115

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQI---- 342
           V K   + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    EE  ++    
Sbjct: 116 VKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLVKQG 175

Query: 343 -ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
            +T L     S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ +A
Sbjct: 176 NVTALAMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQEA 232

Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F   ED+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M +T     
Sbjct: 233 FAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK---- 288

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                LV T+                 E  P               + + WR     + +
Sbjct: 289 -----LVLTDD----------------ELPP---------------LVQMWRNASPHIVQ 312

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
            W ++ +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G NR
Sbjct: 313 FWWDVDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPKPKIGTNR 366

Query: 578 ------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                 +++   T ++  R  TYG KL ENIVQA SRD+LAE M         +V+ +HD
Sbjct: 367 FGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHD 426

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E V + P     +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 427 EAVIDAPSNRSLDT--MVQLMTEVPDWANGLILNAAGFVSDFYKK 469


>gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated
           bacterium]
          Length = 206

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 107/205 (52%), Positives = 129/205 (62%), Gaps = 2/205 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +D  PV+LWD      +P  L + 
Sbjct: 1   MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL+   
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K EEGK LIARFCKG      YD  + NH +AW LF EYCK DV  TRE+FK L PL
Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203
           + +E+ LW LDQ INDRGY +D+ L
Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDL 205


>gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening
           disease-associated, Peptide, 207 aa]
          Length = 207

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 129/205 (62%), Gaps = 2/205 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           ++ LFID ETRSP  L K G+  YAE   + L A+ +D  PV+LWD      +P  L + 
Sbjct: 2   VSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 61

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL+   
Sbjct: 62  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 121

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K EEGK LIARFCKG      YD  + NH +AW LF EYCK DV  TRE+FK L PL
Sbjct: 122 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 181

Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203
           + +E+ LW LDQ INDRGY +D+ L
Sbjct: 182 NPEERTLWLLDQEINDRGYRIDLDL 206


>gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/406 (33%), Positives = 209/406 (51%), Gaps = 23/406 (5%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           TL ID ET S +DL KCG+  YA+     ++LFA+ FDD   ++ D      + + +K A
Sbjct: 8   TLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKNA 67

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  +   A N+ FERT L     + +    W+CT V +    LP +L+ VG  L LS 
Sbjct: 68  LSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLSE 127

Query: 121 QKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE 176
           QK++EGK+LI  F   CK         RN P H  E W+ F  YC  DV V + I ++L 
Sbjct: 128 QKLKEGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQKLH 187

Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             P+   E   + LDQ INDRG  VD  L    +   D+    +         GL  +  
Sbjct: 188 KFPIPESEMAFYRLDQEINDRGVLVDRELVEQ-SITCDLLHKDIVTNRAYEVTGL-ENPN 245

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
            + +LK WL  E G+ ++ L++     ++        +A+++   R+  ++++V K   +
Sbjct: 246 SVSQLKGWLS-ERGVEIDSLSKGAVAELIEDADGEVLEALKL---RLLMAKTSVKKYEAI 301

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT------HLPT 348
             ++ SDGR+ G LQF GA+RTGRW+G +   QNLP+   S  EL + +        L  
Sbjct: 302 ERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEELEL 361

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              S P+   ++S+ +R+  I  EG + +VAD + IEARVLAW++G
Sbjct: 362 FYESTPN---VLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404


>gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1]
 gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 524

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 147/485 (30%), Positives = 220/485 (45%), Gaps = 108/485 (22%)

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L TWL  + G+  E + +   +++L+ +  +   A Q    R  A++++  KL  +V+  
Sbjct: 100 LTTWL-RDQGVETEGVAKAAVRQMLAGD--IEGAARQAVEIRAEAAKASTAKLTAMVKCA 156

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD--- 355
             DGR RG L  +  + TGRW+G +   QNLPR      +L      +P  I  D D   
Sbjct: 157 CDDGRARG-LHLVYGAGTGRWAGRLIQLQNLPRGVIKKADL-----AIPLIIDGDIDLVS 210

Query: 356 -----PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TG 405
                PL +IS  +R C+I +EG   + +D + IE R+ AW+A E+WK++AF      TG
Sbjct: 211 MLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTG 270

Query: 406 EDLYV-----------TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            DLY+             YA   N    + + ++   GKV ELALG+ GG  AFQ MA+ 
Sbjct: 271 RDLYLIGAEKILTLLKVLYAHPLN----ENSPERTPYGKVPELALGFGGGVGAFQSMAAI 326

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+ +                 D E                        +++K AWR+ H
Sbjct: 327 YGMKVT----------------DEE-----------------------ADQIKVAWREAH 347

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--- 571
            RV  LW  +  A    I N   +++     +  V        L ++LPSGR L Y    
Sbjct: 348 PRVVALWRNMEDAAFNAISNPGRVVSTAGGRIKYVV---KGGFLWMVLPSGRPLAYAHPR 404

Query: 572 --------DVGNNRSYL---------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                   ++G +   L         N+ TR+  R  TYGG L EN +QA++RD+LA  +
Sbjct: 405 IEKRRPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANAL 464

Query: 615 MNATKAGYDIVLTVHDEIVCE----TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
           +    AGY +V+ VHDE + E        DEF +     +M   P+WA GLP+ A G+  
Sbjct: 465 LKLEAAGYPVVIHVHDEALAEVRKGVGSVDEFKS-----IMCDTPAWAAGLPVAAAGWRG 519

Query: 671 KRYRK 675
            RYRK
Sbjct: 520 SRYRK 524


>gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1]
 gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 516

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 143/469 (30%), Positives = 214/469 (45%), Gaps = 107/469 (22%)

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
           T+   +++L+ +  +   A Q    R  A++++  KL  +V+    DGR RG L  +  +
Sbjct: 107 TKAAVRQMLAGD--IEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARG-LHLVYGA 163

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD--------PLQIISDCVRS 366
            TGRW+G +   QNLPR S    +L      +P  I  D D        PL +IS  +R 
Sbjct: 164 GTGRWAGRLIQLQNLPRGSVKKADL-----AIPLIIDGDIDLVSMLFGPPLDVISSNLRG 218

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV----------- 410
           C+I +EG   + +D + IE R+ AW+A E+WK++AF      TG DLY+           
Sbjct: 219 CLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLK 278

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA   N    + ++++   GKV ELALG+ GG  AFQ MA+  G+ +           
Sbjct: 279 VPYAHPLN----ENSQERTPYGKVPELALGFGGGVGAFQSMAAIYGMKVT---------- 324

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 D E                        +++K AWR+ H RV  LW  +  A   
Sbjct: 325 ------DEE-----------------------ADQIKVAWREAHPRVVALWRNMEDAAFN 355

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-----------DVGNNRSY 579
            I N   +++     +  V        L ++LPSGR L Y            ++G +   
Sbjct: 356 AISNPGRVVSTAGGRIKYVV---KGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIK 412

Query: 580 L---------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           L         N+ TR+  R  TYGG L EN +QA++RD+LA  ++    AGY +V+ VHD
Sbjct: 413 LKDTITFMSVNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHD 472

Query: 631 EIVCE----TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E + E        DEF +     +M   P+WA GLP+ A G+   RYRK
Sbjct: 473 EALAEIRKGVGSVDEFKS-----IMCDTPAWAAGLPVAAAGWRGSRYRK 516


>gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 377

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/332 (38%), Positives = 170/332 (51%), Gaps = 49/332 (14%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F +Y + DV   R++ KRL     +  E  LW+LDQTINDRG  VD  LA      V
Sbjct: 3   WAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L +    LT G+V ++   + L   L    G+ L D+ + T +R L  +  L P
Sbjct: 63  ERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCL--DDPLLP 120

Query: 272 QAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           + + ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 331 RPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           RP+ S E +   I  +      +  D D + + S  +RSC+IA   KKLVVADL+ IE R
Sbjct: 181 RPTLSQEAITVGIDAMKAGCVDLVFD-DVMALTSSALRSCLIAPTHKKLVVADLSNIEGR 239

Query: 388 VLAWMAGEQWKLKAF----------------------------------------ETGED 407
           VLAW+AGE  KL AF                                          G+D
Sbjct: 240 VLAWLAGETPKLHAFGEFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHAPIRKGDD 299

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           +Y   YA SF +AP  VTK QR IGKV ELAL
Sbjct: 300 IYKRAYAHSFGIAPQAVTKQQRQIGKVQELAL 331


>gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 384

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 185/368 (50%), Gaps = 55/368 (14%)

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----------- 403
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF            
Sbjct: 24  DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGT 83

Query: 404 -----------------------------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         G+D+Y   YA SF +AP  VTK+QR IGKV
Sbjct: 84  WHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 143

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   ++A    +W + N  P   
Sbjct: 144 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFG 201

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L  A    I + +            + M+ 
Sbjct: 202 LSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQY 255

Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 256 SRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSR 315

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           D+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG
Sbjct: 316 DVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 375

Query: 668 YESKRYRK 675
           +++ RYRK
Sbjct: 376 FQTHRYRK 383


>gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 143/226 (63%), Gaps = 12/226 (5%)

Query: 253 DLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           D+  +T QR +  N    P+A+ ++ + R+++  ++  K   L+++++ DGRLRGT QF 
Sbjct: 1   DMQASTLQRRV--NDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFC 58

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCV 368
           GASRTGRW+G +F P NLPRP+   + +D+ +  L      +  D D +Q+ S  +R C+
Sbjct: 59  GASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICD-DIMQLTSSALRGCI 117

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQ 423
           IA +GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY   YAR+FN+ P  
Sbjct: 118 IAPQGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKN 177

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           VTK QR IGKVMEL LGY GG  AF   A   GLNL+  A     N
Sbjct: 178 VTKAQRQIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAEAALPN 223


>gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3]
 gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3]
          Length = 656

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 199/715 (27%), Positives = 305/715 (42%), Gaps = 108/715 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFET S  DLT+ G+ +Y  D     + F F        +LW+      +P+V+   
Sbjct: 6   LFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEVGQR--VPEVITRH 63

Query: 61  LENTDVTIVAHNSYFE----RTVLKACFNL-DIP---IHRWICTLVLARSNGLPSALKAV 112
           +    +  VAHN+ F+     TVL+      D+P   I +  C+   AR NGLP +L   
Sbjct: 64  VRAGHL-FVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 122

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG + +             D    +H E +    +Y   D      ++
Sbjct: 123 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVGVW 176

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   PL ++EQ  + +D  IN RG  VDV  A  +  +      +LD E+  LT G V +
Sbjct: 177 ENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGVLA 236

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              +EK+KT+     G  ++D    T +++ ++   L     Q+   R+ ASR+   K +
Sbjct: 237 VSEVEKIKTYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 292

Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQNL----PRPSRSHEE----LDQ 341
             +   +  GRL+ +  + GA     T R +G     Q L    PRP +   +    LD 
Sbjct: 293 AAILRAHVGGRLQHSTIYHGALSGRSTARGAGGA---QTLNTARPRPGKKTADCEAILDA 349

Query: 342 IITHLPTSITS-DPDP-LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398
            + H    ++S +  P L  ++D  R    A++ G  LV ADL+GIEAR   W+AG+   
Sbjct: 350 CLRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLEL 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AFE G D Y    A  F V    VTKDQR IGKV  LAL Y GGA AF  MA+  G++
Sbjct: 410 LEAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVH 469

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L                              P   ++++ +          WR       
Sbjct: 470 L------------------------------PPEQVDEIVLN---------WRAARPAFE 490

Query: 519 ELWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573
             W+    +    ++  N +  +   R     V    D   L + LPSGR++ Y +    
Sbjct: 491 RWWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFVHDGRALRMQLPSGRAISYHNARLH 550

Query: 574 ---GNN---------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
              G N           Y+ T  R++         L+ N+ Q ++RD+    +++  +  
Sbjct: 551 LEPGANVPIAIYDKPEGYIETLDRKI---------LSNNMTQGLARDLFWSVLLDVDRV- 600

Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             IV  V+DE + E   +  E     L   M    +W  GLPL AEG+   R+RK
Sbjct: 601 EQIVHHVYDEALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655


>gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage]
          Length = 234

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 100/226 (44%), Positives = 143/226 (63%), Gaps = 12/226 (5%)

Query: 253 DLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           D+  +T QR +  N    P+A+ ++ + R+++  ++  K   L++++++DGRLRGT QF 
Sbjct: 1   DMQASTLQRRV--NDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFC 58

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCV 368
           GASRTGRW+G +F P NLPRP+   + +D+ +  L      +  D D +Q+ S  +R C+
Sbjct: 59  GASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICD-DIMQLTSSALRGCI 117

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQ 423
           IA +GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   YAR+FN+ P  
Sbjct: 118 IAPQGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKN 177

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           VTK QR IGKVMEL LGY GG  AF   A   GL+L+  A     N
Sbjct: 178 VTKAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPN 223


>gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2]
 gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2]
          Length = 658

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 199/726 (27%), Positives = 311/726 (42%), Gaps = 129/726 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFE  S  DL   G+ +Y        + F F        +LW+ +  P+  Q+L   
Sbjct: 8   LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWE-LGQPIPRQILAHI 66

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI--------------CTLVLARSNGLP 106
                 T VAHN+ F+  +    +N  +P  RW+              C+   AR NGLP
Sbjct: 67  AAGK--TFVAHNAAFDALI----WNDVLP--RWVKADLPQLNLRGQVQCSAARARYNGLP 118

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGE-----THECLYDRNKPNHREAWRLFGEYC 161
             L    EAL L  QK  EG   +            TH  L+ R             +Y 
Sbjct: 119 GGLGRAAEALGLPLQKDREGAAAMKELMHNPEWTPATHPELFARTY-----------KYA 167

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             D  V   +++  +P+  KEQ  W LD  IN RG+ VDV  A  + ++  + +  +D E
Sbjct: 168 LLDTDVMVALWEATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFE 227

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNR 280
           +E+ T G + ++  +++++++     G  L++    + + +L+ +    P+ ++ V   R
Sbjct: 228 VETATQGKILTTSVIKQIQSFA-AGLGAELDEAGRESVKALLTRDD--VPEVLRDVLTLR 284

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS--GCV-FPPQNLPRPSRSHE 337
           + ASR A  K + ++ A + +GR+  +  + GA  +GR +  GC      N+ RP R   
Sbjct: 285 LDASR-APKKHDAILRA-HVNGRMCHSTVYHGA-LSGRSTAMGCGDVQLLNVARP-RPGR 340

Query: 338 ELDQIITHLPTSITSDPD---------PLQIISDCVRSCVIASE-GKKLVVADLAGIEAR 387
           ++   IT+L  +   D D         PL  ++D  R    A+  G  LVVADL+GIEAR
Sbjct: 341 KVKDTITYLDAARRRDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEAR 400

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446
              W+A ++  L  +E G D Y    A  F++     VT DQR IGK+  LAL + GG  
Sbjct: 401 KGPWLANDEGMLVEYEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDG 460

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
           A   MA   GL L+               ED      W                      
Sbjct: 461 ALDNMAKAYGLELS---------------EDLRRKIVW---------------------- 483

Query: 507 KKAWRQKHSRVSELWNEL-HQAFEQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPS 564
             ++R+ H  +S  W  L + A     + G+A++    R +       +D   L + LPS
Sbjct: 484 --SYRESHPALSTWWASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPS 541

Query: 565 GRSLVYRDVGNNRSYL--------------NTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
           GR++ Y    N R  L              N     L R+      L+ N+ Q ++RD+ 
Sbjct: 542 GRAISYH---NARLVLEPGASAPIAVYDKPNGVVETLDRKI-----LSNNMTQGLARDLF 593

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
            E M++       IV  V+DE++ E P+   E     L   ++  P WA GLPL AEG+ 
Sbjct: 594 WEAMLSVAPV-EQIVHHVYDEVILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFV 652

Query: 670 SKRYRK 675
           S  +RK
Sbjct: 653 SPYWRK 658


>gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae]
 gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/226 (44%), Positives = 143/226 (63%), Gaps = 12/226 (5%)

Query: 253 DLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           D+  +T QR +  N    P+A+ ++ + R+++  ++  K   L++++++DGRLRGT QF 
Sbjct: 1   DMQASTLQRRV--NDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFC 58

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCV 368
           GASRTGRW+G +F P NLPRP+   + +D+ +  L      +  D D +Q+ S  +R C+
Sbjct: 59  GASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICD-DIMQLTSSALRGCI 117

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQ 423
           IA +GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY   YAR+F + P  
Sbjct: 118 IAPQGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPEN 177

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           VTK QR IGKVMEL LGY GG  AF   A   GL+L+  A     N
Sbjct: 178 VTKAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPN 223


>gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage]
          Length = 234

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/226 (43%), Positives = 141/226 (62%), Gaps = 12/226 (5%)

Query: 253 DLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           D+  +T QR +  N    P+A+ ++ + R+++  ++  K   L++++++DGRLRGT QF 
Sbjct: 1   DMQASTLQRRV--NDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFC 58

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCV 368
           GASRTGRW+G +F P NLPRP+   + +D+ +  L      +  D D +Q+ S  +R C+
Sbjct: 59  GASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICD-DIMQLTSSALRGCI 117

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQ 423
           IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   YAR+F + P  
Sbjct: 118 IAPXGKKLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXN 177

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           VTK QR IGKVMEL LGY GG  AF   A   GL+L+  A     N
Sbjct: 178 VTKAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAALPN 223


>gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 368

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 137/414 (33%), Positives = 191/414 (46%), Gaps = 67/414 (16%)

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R++ S+++V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL
Sbjct: 3   RLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL 61

Query: 340 DQIITHLPTSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           +     +      D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A
Sbjct: 62  EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 121

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKM 451
            EQW+L  F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M
Sbjct: 122 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 181

Query: 452 AS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            +   G+  N    LV +                                         W
Sbjct: 182 GALEMGIEENELQGLVDS-----------------------------------------W 200

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R  +  +   W    +A   T+++ K       R     YMK  K  L++ LPSGR+L Y
Sbjct: 201 RNANPNIVNFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAY 254

Query: 571 RD--VGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
               VG N        ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      G
Sbjct: 255 PKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALG 314

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + IV  VHDE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 315 FKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367


>gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43]
 gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43]
          Length = 656

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 187/715 (26%), Positives = 299/715 (41%), Gaps = 108/715 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFE  S  DLT+ G+ +Y +D     + F F        +LW+  +  V+P+ +   
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWE--YGNVVPKQIVMH 63

Query: 61  LENTDVTIVAHNSYFERTVLKACFNL-----DIP---IHRWICTLVLARSNGLPSALKAV 112
           L +  +  VAHN+ F+  +            D+P   I +  C+   AR NGLP +L   
Sbjct: 64  LTSGGL-FVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 122

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG + +             D    +H E +    +Y   D      ++
Sbjct: 123 CEALGLPVQKDTEGAKWMKEIAANP------DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   PL  +EQ  + +D  IN RG  VDV  A  +  +      +LD E+  LT G + +
Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + K+K +     G  ++D    T +++ ++   L     Q+   R+ ASR+   K +
Sbjct: 237 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 292

Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQNL----PRPSRSHEELDQIITH 345
             +   +  GRL+    + GA     T R +G     Q L    PRP +   + + I+  
Sbjct: 293 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGA---QTLNTARPRPGKKTADCEAILDA 349

Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398
                 +  S P+    L  ++D  R    A++ G  LV ADL+GIEAR+  W+A +  K
Sbjct: 350 CLRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPK 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AFE G D Y       +++    VTKDQR +GK  +LALG+ G   AF  MA+  G++
Sbjct: 410 LEAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVH 469

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L                              PE   E ++           WR       
Sbjct: 470 LP-----------------------------PEQVSEIVY----------NWRAGRPAFE 490

Query: 519 ELWNEL-HQAFEQTIENGKAIIAR-KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573
             W+   + A     + G+ I+    R +   +   KD   L + LPSGR++ Y +    
Sbjct: 491 RWWSLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLH 550

Query: 574 ---GNN---------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
              G N           Y+ T  R++         L+ N  Q +SRD+    +++  +  
Sbjct: 551 LEPGANVPIAIYDKPEGYVETLDRKI---------LSNNQTQGLSRDLFWSVLLDVDRV- 600

Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +IV  ++DE + E   +        L   M    +W  GLPL AEG+   R+RK
Sbjct: 601 EEIVHHIYDEALLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655


>gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 952

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 177/328 (53%), Gaps = 16/328 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL K G+ KYAE  D  ++LFA+  DD  V++ D  +  ++P+ + 
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT++ +   GLP +L+ VGE LKL
Sbjct: 61  SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM EGK LI  F   CK      +  RN P+H  E W  F EY + DV    EI K+
Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIKKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK-LDQELESLTYGLVS 231
           L   P+   E E +++DQ INDRG  +D  L  +  +  ++ R + +D+ +E LT GL +
Sbjct: 181 LSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIE-LT-GLEN 238

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            +  ++ LK WL  E GL ++ L +   +  L + +    + +++   R   S+S+V K 
Sbjct: 239 PNSPMQ-LKEWLN-EKGLEIDSLAKKDVESALKNAEGDIKEVLEL---RQELSKSSVRKY 293

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           + +     +D R+RG LQF GA+RTGR+
Sbjct: 294 DAMKNVKGNDKRVRGLLQFYGANRTGRY 321



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 161/332 (48%), Gaps = 62/332 (18%)

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
           P  ++S  +R+  I  EG + +V+D + IEARVLAW+AGE W L AF+ GED+Y +T ++
Sbjct: 670 PSDVLSQLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQ 729

Query: 416 SFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAP 472
            F V   +  V  D R  GKV  LA GY G   A + M +   GL+ +    +V +    
Sbjct: 730 MFGVPVVKHGVNGDLRQKGKVATLACGYGGSVGALKAMGAIEMGLSEDELQSIVDS---- 785

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                                WR+ +  +  LW ++    ++ +
Sbjct: 786 -------------------------------------WREANPNIVSLWWDIDSVVKRVV 808

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT------ 584
           +       R + +   + +  +K  L + LPS R L Y    +G NR    +        
Sbjct: 809 K------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVV 862

Query: 585 -RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             +  +  +YGGK  ENIVQA++RDILAE MM   K G++IV+ +HDE+V E   +D  +
Sbjct: 863 GNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE---SDSSS 919

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              +  +M+  PSWA GL L A+G+ES+ Y+K
Sbjct: 920 IEEINEIMSLVPSWAPGLILDADGFESEFYKK 951


>gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012]
 gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012]
 gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74]
          Length = 449

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 169/338 (50%), Gaps = 17/338 (5%)

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLY 143
           L  P+ RW  T+V A ++GLP +L  + E L +   K +  EGK LI  FCK        
Sbjct: 4   LAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKL 63

Query: 144 DR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVD 200
            R     H E WR F  Y   D+   RE++ RL   + +  EL  W+ DQ INDRG C+D
Sbjct: 64  RRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMD 123

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
           + LA    + VD E+ +L +  + +T G V ++   + L   +    G+ L D+  +T +
Sbjct: 124 MQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLE 183

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
           R ++ N  L     ++   R++AS ++  K   L++ ++ DGRLRGTLQF GASRTGRW+
Sbjct: 184 RRIA-NPDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWA 242

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS----EGKKL 376
           G +F PQNLPRPS   E++D+ I   P +       LQI S  V +    S       KL
Sbjct: 243 GRLFQPQNLPRPSLKQEQIDEGI-EAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKL 301

Query: 377 VVADLAGIEARVLAWMAGEQWK------LKAFETGEDL 408
              D    EA     +    WK      LKAF  G  L
Sbjct: 302 QALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 339


>gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46]
          Length = 330

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 172/329 (52%), Gaps = 19/329 (5%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID E  S  D++KCG  KY  AED  +++ A+  D  PV   D       P     +  K
Sbjct: 3   IDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMAIANK 182

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++  P+++ EQ+ W  DQ INDRG  +  +L    N +    + +L ++ + +T   + +
Sbjct: 183 IKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQITD--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L TWL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLTWLNKEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            + + M SD R+RG  QF GA  TGRW+G
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAG 325


>gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 352

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 177/376 (47%), Gaps = 68/376 (18%)

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSH 336
           R   SRS+V K   +++   +D R  G LQF GA+RTGRW+G +   QNLPR   P  + 
Sbjct: 24  RQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLAQ 83

Query: 337 EE---LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                 D     L    +S PD L   S  +R+  I S+G + +VAD + IEARVLAW+A
Sbjct: 84  ARSLVRDGNGETLEMLYSSVPDTL---SQLIRTAFIPSKGHRFIVADYSAIEARVLAWLA 140

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQK 450
           GE+  L AF+ GEDLY  T +  F V P +   V  + R  GK+  LA GY G   A + 
Sbjct: 141 GEETTLAAFKNGEDLYCATASAMFGV-PVEKHGVNSELRQKGKIAVLACGYNGSVGALKA 199

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           M +            +K   + +E                             + +  AW
Sbjct: 200 MGA------------LKMGLSEDE----------------------------LQPIVDAW 219

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R  +  + +LW+++  A  + I  G+ +          +  +K    L + LPSGR L Y
Sbjct: 220 RAANPNIVQLWHDVDNAATRAISTGRPVTLGN------LGFEKKSGMLFINLPSGRRLAY 273

Query: 571 --RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
               +G NR    + T       R+  +  TYGGKL ENIVQA +RD+L E +     AG
Sbjct: 274 VKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEAITRIENAG 333

Query: 622 YDIVLTVHDEIVCETP 637
           + IV+ +HDE+V + P
Sbjct: 334 HRIVMHIHDEVVIDEP 349


>gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c]
 gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 312

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 139/253 (54%), Gaps = 5/253 (1%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F EY + DV   R++ KRL     +  E  LW+LDQTINDRG  +D  L       V
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L Q  E+LT G V ++   + L   L    G+ L D+ + T  R +  +  L  
Sbjct: 63  ERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVD-DPALPE 121

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLPR
Sbjct: 122 TVRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181

Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P+ S E +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RVL
Sbjct: 182 PTLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRVL 241

Query: 390 AWMAGEQWKLKAF 402
           AW+AGE  KL AF
Sbjct: 242 AWLAGETPKLHAF 254


>gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1]
 gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1]
          Length = 655

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 192/715 (26%), Positives = 303/715 (42%), Gaps = 109/715 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFET S  DLT+ G+ +Y +D     + F F        +LW+ V  PV  Q++   
Sbjct: 6   LFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWE-VGQPVPKQIIGHL 64

Query: 61  LENTDVTIVAHNSYFE----RTVLKACFNL-DIP---IHRWICTLVLARSNGLPSALKAV 112
                   VAHN+ F+     TVL+      D+P   I +  C+   AR NGLP +L   
Sbjct: 65  ---NGSPFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 121

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG + +             D    +H E +    +Y   D      ++
Sbjct: 122 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFTRTYKYALIDTDAMVGVW 175

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   PL ++EQ  + +D  IN RG  VDV  A  +  +      +LD E+  LT G + +
Sbjct: 176 ENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + K+K +     G  ++D    T +++ ++   L     Q+   R+ ASR+   K +
Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 291

Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQNL----PRPSRSHEELDQIITH 345
             +   +  GRL+    + GA     T R +G     Q L    PRP +   + + I+  
Sbjct: 292 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGA---QTLNTARPRPGKKTADCEAILDA 348

Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398
                 +  S P+    L  ++D  R    A++ G  LV ADL+GIEAR+  W+A +  K
Sbjct: 349 CLRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPK 408

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AFE G D Y       +++    VTKDQR +GKV +LALG+ GG  AF  MA+  G++
Sbjct: 409 LEAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVH 468

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L                              PE   E ++           WR       
Sbjct: 469 LP-----------------------------PEQVSEIVY----------NWRAGRPAFE 489

Query: 519 ELWNELHQAFEQTIEN-GKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRDV--- 573
             W+    +    ++  G+ ++    RD    +   +D   L + LPSGR++ Y +    
Sbjct: 490 RWWSLCEYSVLMALDQPGREVVMPVGRDFCSQITFVRDARALRMHLPSGRAISYHNARLH 549

Query: 574 ---GNN---------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
              G N           Y+ T  R++         L+ N  Q ++RD+    +++  +  
Sbjct: 550 LEPGANVPIAIYDKPEGYVETLDRKI---------LSNNQTQGLARDLFWSVLLDVDRV- 599

Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +IV  V+DE + E   +        L   M    +W  GLPL AEG+   R+RK
Sbjct: 600 EEIVHHVYDEALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781]
 gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781]
          Length = 655

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 189/715 (26%), Positives = 297/715 (41%), Gaps = 109/715 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFE  S  DLT+ G+ +Y +D     + F F        +LW+ V  PV  Q++   
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWE-VGQPVPKQIVGHL 64

Query: 61  LENTDVTIVAHNSYFE----RTVLKACFNL-DIP---IHRWICTLVLARSNGLPSALKAV 112
                   VAHN+ F+      VL+      D+P   I +  C+   AR NGLP +L   
Sbjct: 65  ---NGSPFVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 121

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG + +             D    +H E +    +Y   D      ++
Sbjct: 122 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVGVW 175

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   PL  + Q  + +D  IN RG   DV  A  +  +      +LD E+  LT G + +
Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + K+K +     G  ++D    T +++ ++   L     Q+   R+ ASR+   K +
Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 291

Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQNL----PRPSRSHEELDQIITH 345
             +   +  GRL+    + GA     T R +G     Q L    PRP +   + + I+  
Sbjct: 292 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGA---QTLNTARPRPGKKTADCEAILDA 348

Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398
                 +  S P+    L  ++D  R    A++ G  LV ADL+GIEARV  W+A +  K
Sbjct: 349 CLRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPK 408

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AFE G D Y       +++    VTKDQR +GK  +LALG+ GG  AF  MA+  G++
Sbjct: 409 LEAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVH 468

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L                              PE   E ++           WR       
Sbjct: 469 LP-----------------------------PEQVSEIVY----------NWRAGRPAFE 489

Query: 519 ELWNELHQAFEQTIEN-GKAIIAR-KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573
             W+    +    ++  G+ I+    R +   +   KD   L + LPSGR++ Y +    
Sbjct: 490 RWWSLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLH 549

Query: 574 ---GNN---------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
              G N           Y+ T  R++         L+ N  Q ++RD+    +++  +  
Sbjct: 550 LEPGANVPIAIYDKPEGYVETLDRKI---------LSNNQTQGLARDLFWSVLLDVDRV- 599

Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +IV  V+DE + E   +        L   M    +W  GLPL AEG+   R+RK
Sbjct: 600 EEIVHHVYDEALLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
 gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
          Length = 838

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 146/538 (27%), Positives = 234/538 (43%), Gaps = 73/538 (13%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEALE 62
           IDFETRSP D+ K G   Y+ D         +    +  V+LW   H       + E+  
Sbjct: 41  IDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFF---IGESPA 97

Query: 63  NTDV--------TIVAHNSYFERTVLKACFNLDIPIH--------RWICTLVLARSNGLP 106
            TD+         + AHN++FER +     N+ IP +        +W C+   A +  LP
Sbjct: 98  PTDLFAFILAGGLVEAHNAFFERCIWT---NIMIPRYGWPVIKPDQWRCSAAKASAMSLP 154

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCK------GETHECLYDRNKPNHREAWRLFG-- 158
            +L+    A+ L   K  EG++L+ + CK       E  + ++D        A++  G  
Sbjct: 155 RSLEEAVAAMDLGIDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYP 214

Query: 159 --------------EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                         +YCK DV     +   L  LS +E E W +DQ +N RG   D+ +A
Sbjct: 215 IVYHETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMA 274

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
                +    R +L+  LE+LT G+ S+++    +K WL  E  L L D    T +  L 
Sbjct: 275 KQALSMASEWRKRLNSILEALT-GITSATK-RAAVKEWLVEEEDLDLPDTAADTLKHYLE 332

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE-AMNSDGRLRGTLQFLGASRTGRWSGCV 323
            N++L+ +A +V       ++++  K N +++ A   D R R  + + GA  TGRW+G  
Sbjct: 333 -NEELSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKG 390

Query: 324 FPPQNLPRPSRSHEELDQ-----IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
               N P      ++ D+     +   L        D +  +S  +R  ++A EG++L+V
Sbjct: 391 IQVHNFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMV 450

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLY--VTTYARSFNVAPAQVTKDQ-------- 428
           AD A IEAR + W A +Q  L  F  G+D+Y  + T    F V   ++ KD         
Sbjct: 451 ADYAAIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQ-KKIAKDWTHPDYTLH 509

Query: 429 ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
              R  GK   L LGY  G   F       G+  +  A +++    PE+ +  E + R
Sbjct: 510 SGCRQFGKQAILGLGYGMGYMTFLLTCRKYGITFSR-AEVLRI-MGPEKLDKTEEWVR 565



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 74/130 (56%), Gaps = 17/130 (13%)

Query: 562 LPSGRSLVYRDV---------GNNRSYL-----NTTTRQLTREYTYGGKLTENIVQAVSR 607
           LPSGR + Y D          G  +  L     +  TR+  R  TYGGK+ ENI QAV+R
Sbjct: 710 LPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTATYGGKIVENITQAVAR 769

Query: 608 DILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           DI+AE M+N+ K G  YD +++VHDE+VCE  D D+ +      LM+  P WA G P+ A
Sbjct: 770 DIMAEAMLNSVKEGCPYDPIMSVHDELVCEV-DEDKGDLEEFETLMSDLPIWAAGCPIVA 828

Query: 666 EGYESKRYRK 675
           E    KRYRK
Sbjct: 829 EAERFKRYRK 838


>gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c]
 gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 252

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/259 (41%), Positives = 138/259 (53%), Gaps = 15/259 (5%)

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +TK+QR IGKV ELALGY GG  AF   A+   ++L   A   +    P   ++A     
Sbjct: 1   MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMA--AQAVFPPLLLQEATELLE 58

Query: 484 WMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
           W + NH P   + D     AC+  K+AWR  H  ++  W  L  A    I + +      
Sbjct: 59  WTKANHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETT---- 113

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGK 596
                 + ++  +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGK
Sbjct: 114 -HTCCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGK 172

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656
           L ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P 
Sbjct: 173 LVENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPP 232

Query: 657 WAKGLPLKAEGYESKRYRK 675
           WA+GLPL AEG+++ RYRK
Sbjct: 233 WAEGLPLAAEGFDTYRYRK 251


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 159/389 (40%), Gaps = 90/389 (23%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSG-CVFPPQNLPRPSRSHEELDQIITHLPTS 349
           L T+      DG L   L++ GA  TGRW+G      QN  R +                
Sbjct: 294 LETMQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREA---------------Y 338

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              DP          R C++A  G KL++ADL+ IE RVLAW+AG++        G  +Y
Sbjct: 339 YGVDP----------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIY 388

Query: 410 VTTYARSFNVAPAQVTKDQR---AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
                 S N     + K+      + K   + LGY  G K FQ +A   GL ++      
Sbjct: 389 QAHAETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMS------ 442

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                           IG A +R    +R+ + R+  LW  +  
Sbjct: 443 --------------------------------IGEA-KRTVDDFRKANPRIVSLWQAVED 469

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
           +    I                       +   + LPS RS+ Y DV        TT R 
Sbjct: 470 SMRYHI----------------------GSTFFMYLPSLRSIRYFDVQEEEGLTATTERG 507

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
             R + YGGKLTEN+VQA +RD+ AEG++   KAG  I+ TVHDE++CE P+  +     
Sbjct: 508 GRRLHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVET 567

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +  L+   P W  GLP+ AEG E+  Y K
Sbjct: 568 VTDLLAQTPDWIPGLPVAAEGIETSCYTK 596


>gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 356

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 180/404 (44%), Gaps = 72/404 (17%)

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR----SHEELDQIITH 345
           K   +  A  +D R RG  QF GA+RTGRW+G +   QNLP+       +  EL +I  +
Sbjct: 6   KYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIGDY 65

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
              S+  D  P   +S  +R+  IA  G K  VAD + IEARV+A +AGE W+   F+ G
Sbjct: 66  DSLSMLYDDIP-DTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKNG 124

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTF 462
            D+Y  + ++ F+V   +  +    R  GK+ ELALGY G   A + M +   GL  +  
Sbjct: 125 GDIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALEMGLTEDEL 184

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV                                          AWRQ +  +  LW 
Sbjct: 185 QPLV-----------------------------------------DAWRQSNPNIVALWW 203

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR--- 577
           +   A +  I   K   +     +   +       L++ LPSGR L Y    +G N+   
Sbjct: 204 DFDTAIKNAI---KMHCSTASHGIKFTWR---SGMLLITLPSGRKLTYVKPRIGENKFGG 257

Query: 578 ---SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT--VHDE 631
              +Y     T++  R   YG K  EN+VQA+SRD+L    MNA K      +   VHDE
Sbjct: 258 ESVTYEGIGATKKWERLEIYGPKFVENVVQAISRDLL----MNAMKTLSHCFICGHVHDE 313

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ E   +++ +  +L   M   P W   + L+A+GY ++ Y+K
Sbjct: 314 LIIEC--SEKVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355


>gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 300

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/233 (39%), Positives = 122/233 (52%), Gaps = 47/233 (20%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
           L D+ + T +R L  +  L P+ + ++ + R +AS ++  K   L+   + DGRLRGTLQ
Sbjct: 13  LPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQ 70

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRS 366
           F GASRTGRW+G +F P NLPRP+ S   +   I  +      +  D D + + S  +RS
Sbjct: 71  FNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFD-DVMALTSSALRS 129

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------------------ 402
           C+IA   KKLVVADL+ IE RVLAW+AGE  KL+AF                        
Sbjct: 130 CLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHSGEAITHGAL 189

Query: 403 ----------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
                             G+D+Y   YA SF +AP  VTK QR IGKV ELAL
Sbjct: 190 RGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELAL 242


>gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e]
 gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e]
          Length = 306

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 130/285 (45%), Gaps = 45/285 (15%)

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW--MQE-NHPEH 492
           EL LGY+GG  AF   A   GL+L   A  +        W        W  +QE   P H
Sbjct: 22  ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 81

Query: 493 AIE---------DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN------GKA 537
             E         D  +   C+ +K+ WR+ H      W +L       + N        A
Sbjct: 82  PGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAGA 141

Query: 538 IIARKRRDVPLVYMKKDKNN---------LILMLPSGRSLVYRDVG-------NNRSYLN 581
            + R       ++   + ++         L + LPSGR L Y  +G       +    +N
Sbjct: 142 HLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRIN 201

Query: 582 TTTR-------QLTRE----YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           T  R       QLTR+    YT+GGK  ENIVQA+ RD+LA  M+N    GY IVL+VHD
Sbjct: 202 TNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVHD 261

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+VCETPDT ++  + L  LM + P WA G PL AEG E KRY K
Sbjct: 262 ELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306


>gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 223

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/207 (38%), Positives = 114/207 (55%), Gaps = 7/207 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP+ LK  L++
Sbjct: 10  LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            ++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL ++ +   ++S K
Sbjct: 69  PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128

Query: 123 M--EEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE--P 177
              +EGK LI  FCK         R     H E W  F  Y   D+   REI++ L    
Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALA 204
           ++  E  LW LDQ IN RG C+DV LA
Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELA 215


>gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 284

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/276 (35%), Positives = 137/276 (49%), Gaps = 15/276 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
           GL  +     +L  WL  E GL + +L + T Q  L
Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL 274


>gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638]
 gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638]
 gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68]
          Length = 231

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 130/240 (54%), Gaps = 23/240 (9%)

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI----EDLFIGTA 502
           AF   A    L+L+  A+    N   +   +A++   W  E+    +     E +FI  A
Sbjct: 3   AFITFALVYSLDLDELANAALPNIPRDVIREAKS---WYYESVKRKSTYGLSERVFI--A 57

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLIL 560
           C+ +K+ WR+ H    + W EL    E+T+   +  IA  ++ +   Y+K  +D   L +
Sbjct: 58  CDSLKRLWRRAHPATCDFWYEL----ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRI 110

Query: 561 MLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            LPSGR++ Y        N +Y+  N+ +R+  R  TYGGKL EN+ QA +RD+LA  M 
Sbjct: 111 QLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMP 170

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               AGY IVLTVHDEI+ E PD+ +++A  +  L+ + P WA  +PL A G+ES RYRK
Sbjct: 171 LIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230


>gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7]
 gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11]
          Length = 267

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 114/223 (51%), Gaps = 34/223 (15%)

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-------GKAI 538
           +++ P + I D  +   C+ +K+ WR+ H +    W +L       + N       G  I
Sbjct: 46  KDDRPSY-ILDKKVWRTCDAIKRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANI 104

Query: 539 IARKRRDVPLVYMKKDKNN--------LILMLPSGRSLVYRDVG-------NNRSYLNTT 583
            +   R + +    +  ++        L + LPSGR L Y  +G       +    +NT 
Sbjct: 105 RSNGERAIRIWRTTEIDSSGRNIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTN 164

Query: 584 TR-------QLTRE----YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
            R       QLTR+    YT+GGK  ENIVQA  RD+LA  M+NA   GY IVL+VHDE+
Sbjct: 165 VRIKYQGENQLTRQWTTLYTHGGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDEL 224

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VCETPDT ++  + L  LM + P WA+G PL AEG E KRY K
Sbjct: 225 VCETPDTPDYTVAELEKLMCALPEWAEGFPLVAEGAELKRYAK 267


>gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
 gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
          Length = 290

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 127/246 (51%), Gaps = 19/246 (7%)

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSA----PEEWEDAENFCRWMQENH-PEHAIE 495
           Y+ G    +    +TGL L +   ++ T +A    P   ++A    +W + NH P   + 
Sbjct: 52  YRSGDDRRRYARRSTGLTLPSA--VIDTPNACAASPMPIQEAVEALQWTKANHRPTFGLS 109

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I  G    A     + + Y    +
Sbjct: 110 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY---SR 163

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 164 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 223

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG++
Sbjct: 224 LAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 283

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 284 THRYRK 289


>gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 199

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 100/180 (55%), Gaps = 11/180 (6%)

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
           AC+  K+AWR  H  ++  W  L  A    I  G    A     + + Y    +  L L 
Sbjct: 24  ACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY---SRAWLRLR 78

Query: 562 LPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
           LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M 
Sbjct: 79  LPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMP 138

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E+ RYRK
Sbjct: 139 AIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 198


>gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C]
          Length = 686

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 173/681 (25%), Positives = 267/681 (39%), Gaps = 157/681 (23%)

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           C +  AR   LP +L    +AL+ +++K ++GK+LI + C+  +      + +P  R  W
Sbjct: 62  CDMAKARRFSLPGSLDTAAKALR-TAEKDKKGKQLIGKLCRPVSAT----KARPEPR--W 114

Query: 155 RLFG---------EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
            L+           YC  DV     +   +  ++  E+E W  DQ IN RG  VDV    
Sbjct: 115 TLYTAPQDYADLYRYCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLD 174

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET------GLHLEDLTET-- 257
               IV     +   EL ++T G V S   + KL    FL T       L  E + ET  
Sbjct: 175 NALDIVGQTTRRFTMELAAITNGAVGSVSEVAKLTD--FLATVGCRMHNLKSETVAETLE 232

Query: 258 ------TCQRVL--------SSNKKLTPQAIQVFNN-RMRAS-----------RSAVLKL 291
                 T +R+L        ++ KKL     Q+ ++ R+R              +  ++L
Sbjct: 233 RDDLNPTARRILEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAGTGRWSAGGVQL 292

Query: 292 NTLV------EAMNSDGRLRGT---LQFLGASRTGRWSGCVFPPQN---------LPRPS 333
             L       +  N  GR+ G    ++ +GA+      G      N              
Sbjct: 293 QNLTSKGPKSKTCNGCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKD 352

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             H  LD II           DP+ ++S C+R   IA+ GKK V  D + IEA VLA +A
Sbjct: 353 LKHRNLDLIIDIWG-------DPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALA 405

Query: 394 GEQWKLKAFETGEDLYVTTYAR----SFNVAPAQVTKDQ------RAIGKVMELALGYQG 443
             +W+++ F T   +Y  + ++     F    A   K++      +++GKV ELA GY G
Sbjct: 406 RCEWRIEVFRTHGKIYEMSASKISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGG 465

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
              A+                  K   A E +ED             + A++   +G   
Sbjct: 466 WIGAW------------------KAFGAEEHFED-------------DDAMKKAILG--- 491

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIE--------NGKAIIA----RKRRDVPLVYM 551
                 WR     + E W   ++    T +         G  I+A     K   V  +  
Sbjct: 492 ------WRDASPEIVEFWGGQYRRDPYTRKWVREYYGLEGAVIMAILNPGKCYAVGDITY 545

Query: 552 KKDKNNLILMLPSGRSLVYR-------DVGNNRSY------LNTTTRQ----LTREYTYG 594
               + L   LPSGR L Y        D      Y       NT +++      R  TYG
Sbjct: 546 AVFDDVLYCRLPSGRFLQYHQPKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYG 605

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654
           G+L EN+ QA + D+ A  M      GY +V+  HDE++ E P  D  +   +  LMT  
Sbjct: 606 GRLAENVTQAAAADVQAYAMKQCENNGYPVVMHTHDELIAEVP-GDFGSVEEMAALMTGR 664

Query: 655 PSWAKGLPLKAEGYESKRYRK 675
             W +  P++A G+E  RY+K
Sbjct: 665 EPWREWWPIRAAGWEDDRYQK 685


>gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 205

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 111/207 (53%), Gaps = 13/207 (6%)

Query: 476 EDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           ++A    +W + NH P   + D     AC+  K+AWR  H  ++  W  L  A    I  
Sbjct: 4   QEAVEALQWTKANHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI-- 60

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLT 588
           G    A     + + Y    +  L L LPSGR L Y     D     SY+ T   TR+ T
Sbjct: 61  GHPETAHTCCGITVQY---SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWT 117

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
           R  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L 
Sbjct: 118 RITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLA 177

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYRK 675
            LM + P WA+GLPL AEG+++ RYRK
Sbjct: 178 ALMATPPPWAQGLPLAAEGFQTHRYRK 204


>gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T]
          Length = 714

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 184/426 (43%), Gaps = 79/426 (18%)

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           C +  AR   LP +L A  +ALK +S K ++GK+LI + C+  +      + +P  R  W
Sbjct: 152 CDMAKARRFSLPGSLDAAAQALK-TSPKDKKGKQLINKLCRPVSAT----KARPLPR--W 204

Query: 155 RLFGE---------YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
            L+           YC  DV     +      ++  E+E W  DQ IN RG  VDV    
Sbjct: 205 TLYTAPQDYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLD 264

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
               IVD    +   EL ++T G V S   + K+  +L    G  + +LT  +    L  
Sbjct: 265 NALDIVDQTTRRFTMELAAITNGAVGSVSEVAKMTDFL-AGLGCRMHNLTADSVSEALER 323

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
           +  L P A +V   R   + + V KL +L   ++SDGRLR    F GA  TGRWS     
Sbjct: 324 D-DLNPTARRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQ 381

Query: 326 PQNL----PR--------------------------PSRSHEE--------LDQI----- 342
            QNL    P+                          P     E        +D +     
Sbjct: 382 LQNLTSKGPKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALK 441

Query: 343 -ITH----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            +TH    L  +I  D  P+ ++S C+R   IA+ GKK V  D + IEA VLA +A  +W
Sbjct: 442 DLTHRNLDLIIAIWGD--PITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEW 499

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVT--KDQ--------RAIGKVMELALGYQGGAKA 447
           +L+ F T   +Y  + ++   V   ++   K+Q        +++GKV ELA GY G   A
Sbjct: 500 RLEVFRTHGKIYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGA 559

Query: 448 FQKMAS 453
           ++   +
Sbjct: 560 WKAFGA 565


>gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 341

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 152/316 (48%), Gaps = 34/316 (10%)

Query: 6   IDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           ID ET S +D+ K G+ KYAE  +  ++LFA   D   V ++D     V+P  + +A+ +
Sbjct: 9   IDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEILDAIVS 68

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIH------------------RWICTLVLARSNGL 105
            DV   A N+ FER  L      + P                     W CT++ +   GL
Sbjct: 69  DDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWSAYMGL 128

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYC 161
           P +L+ VG  L L  QKM+EGK+LI  F   CK         RN P H  E W +F  Y 
Sbjct: 129 PLSLEGVGAVLGLKDQKMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKWTVFKSYN 188

Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           K DV V   I ++L   P+     E + LDQ INDRG  VD+ +    N I   ER+K  
Sbjct: 189 KRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVE--NAIAFDERSKAT 246

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFN 278
              E L    + +   + ++K+WL  + G+ +E L     ++V++   K  P+ + QV +
Sbjct: 247 ITDEMLGLTDIDNPNSVSQMKSWLS-DQGIEVESLG----KKVVAEMIKDAPEDLAQVLS 301

Query: 279 NRMRASRSAVLKLNTL 294
            R + ++S+V ++  +
Sbjct: 302 LRQQLAKSSVNRVGEI 317


>gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7]
 gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11]
          Length = 237

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 13/236 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EAL-----ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L A+
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 GEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTR 169
            E L +  S  K + GK LI RF K         R   + H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           E++K++    + E E  + +LDQ INDRG+ VDVALA +  + V   + +L +E +
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQ 236


>gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13]
          Length = 237

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 13/236 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EAL-----ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L A+
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 GEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTR 169
            E L +  S  K + GK LI RF K         R   + H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           E++K++    + E E  + +LDQ INDRG+ VDVALA    + V   + +L +E +
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQ 236


>gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 119/271 (43%), Gaps = 60/271 (22%)

Query: 417 FNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPE 473
           F V   ++TK    R  GK+ ELALGY G   A   M +   GL+ +    LV T     
Sbjct: 2   FGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMGALAMGLSEDELPGLVST----- 56

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                               WR  +  +++ W ++ +A      
Sbjct: 57  ------------------------------------WRNANPHITQFWWDVDEAAV---- 76

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTT------- 584
             +A+  RK   V L+  +     L  MLPSGR L Y    +G N+   +  T       
Sbjct: 77  --RAVRERKETQVGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           ++  R  TYG KL ENIVQ  SRDILAE MM   KAG+ IV  VHDE V E P+    + 
Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEGKS-SV 193

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +  +M   PSW  GLPL+A+GYE + Y+K
Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224


>gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 181

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 5/176 (2%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK  L++
Sbjct: 5   LFCDLETYSDIPIN-CGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            ++  V HN   F+  +L    N+D+P+ R   TLV A ++GLP AL ++ +   ++S K
Sbjct: 64  PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123

Query: 123 M--EEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRL 175
              +EGK LI  FCK         R     H E W  F  Y   D+   REI++ L
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHL 179


>gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 132

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 82/131 (62%), Gaps = 6/131 (4%)

Query: 551 MKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQA 604
           M+  +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QA
Sbjct: 1   MQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQA 60

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           VSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL 
Sbjct: 61  VSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLA 120

Query: 665 AEGYESKRYRK 675
           AEG+E+ RYRK
Sbjct: 121 AEGFETHRYRK 131


>gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 169

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 69/124 (55%), Positives = 79/124 (63%), Gaps = 6/124 (4%)

Query: 558 LILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILA 611
           L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA
Sbjct: 45  LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 104

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
             M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+++ 
Sbjct: 105 ACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTH 164

Query: 672 RYRK 675
           RYRK
Sbjct: 165 RYRK 168


>gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
          Length = 154

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 70/124 (56%), Positives = 79/124 (63%), Gaps = 6/124 (4%)

Query: 558 LILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILA 611
           L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA
Sbjct: 30  LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLA 89

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
             M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E+ 
Sbjct: 90  ACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 149

Query: 672 RYRK 675
           RYRK
Sbjct: 150 RYRK 153


>gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 240

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 121/286 (42%), Gaps = 59/286 (20%)

Query: 402 FETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           F+ GEDLY  T +  F V P +   V  + R  GK+  LA GY G   A + M +     
Sbjct: 1   FKNGEDLYCATASAMFGV-PVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGA----- 54

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +K   + +E                             + +  AWR  +  + 
Sbjct: 55  -------LKMGLSKDE----------------------------LQPIVDAWRAANPNIV 79

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
           +LW+++  A  + I  G  +  R       +  +K    L + LPSGR L Y    +G N
Sbjct: 80  QLWHDVDNAATRAISTGSPVTLRN------LGFEKKSGMLFINLPSGRRLAYVKPGIGMN 133

Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R    + T       R+  +  TYGGKL ENIVQA +RD+L E +     AG  IV+ +H
Sbjct: 134 RFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIH 193

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE+V + P       + +  L+   P    GLP+ A GYE   Y+K
Sbjct: 194 DEVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239


>gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
 gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
          Length = 160

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 68/133 (51%), Positives = 83/133 (62%), Gaps = 6/133 (4%)

Query: 549 VYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIV 602
           + M+  +  L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI 
Sbjct: 27  ITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENIT 86

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662
           QAVSRD+LA  M     AGY IVLTVHDE++ E  D   FNA+ L  LM + P WA+GLP
Sbjct: 87  QAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLP 146

Query: 663 LKAEGYESKRYRK 675
           L AEG+++ RYRK
Sbjct: 147 LAAEGFQTHRYRK 159


>gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46]
          Length = 225

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 115/271 (42%), Gaps = 60/271 (22%)

Query: 417 FNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPE 473
           FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N    LV +     
Sbjct: 2   FNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVDS----- 56

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                               WR  +  +   W    +A   T++
Sbjct: 57  ------------------------------------WRNANPNIVNFWKACQEAAINTVK 80

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------SYLNTT-T 584
           + K       R     YMKK    L++ LPSGR+L Y    VG N        ++     
Sbjct: 81  SRKTHHTHGLR----FYMKK--GFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ E P       
Sbjct: 135 RKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSN-GL 193

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +  +M     WAKGL L ++G+ S  Y K
Sbjct: 194 KEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224


>gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 324

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENI QA +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  WA
Sbjct: 247 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 306

Query: 659 KGLPLKAEGYESKRYRK 675
             LPL A G+E+ RYRK
Sbjct: 307 WDLPLSANGFETYRYRK 323


>gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023]
          Length = 155

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 8/125 (6%)

Query: 558 LILMLPSGRSLVY-------RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
           L + LPSGR+L Y          G+   Y   T +   ++YTYGGKL ENIVQA++RD L
Sbjct: 31  LFIKLPSGRNLAYFRAKLVPGKYGHQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCL 90

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
           A  +     AG   V+ VHDE + E P++ E +   L  ++    SWA GLPL+ +G+ S
Sbjct: 91  AVSLRRIEDAGISTVMHVHDEAITEVPES-ESSVDKLNAILAEPISWAPGLPLQGDGFSS 149

Query: 671 KRYRK 675
             Y K
Sbjct: 150 DFYMK 154


>gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 100

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 55/91 (60%)

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           R + R  +YGGKL ENIVQAV+RD+    M    + G+ IV+ VHDEIV + P    F  
Sbjct: 9   RLVVRLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGFTV 68

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +    LM + P WA GLPL A+GYE   YRK
Sbjct: 69  ADACVLMATLPDWAAGLPLDADGYECDYYRK 99


>gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 222

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 114/270 (42%), Gaps = 61/270 (22%)

Query: 417 FNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           FNVA  +  V    R  GK+ ELALGY G   A + M +                     
Sbjct: 2   FNVAVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGAL-------------------- 41

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                           E  IE+       + +  AWRQ +S +++LW ++ +A +  +  
Sbjct: 42  ----------------EMGIEE----EELQPLVTAWRQSNSNITKLWWDVDRAVKVCV-- 79

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRSYLNTT-TR 585
            K     +   +  +Y       L ++LPSGR L Y           G + +Y     T+
Sbjct: 80  -KQKTPTETHGIKFIY---QSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGTK 135

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  +YG K  ENIV A+SRDIL   M   T     IV  VHDEI+ E      F+A 
Sbjct: 136 KWERIESYGPKFVENIVHAISRDILYHAMQ--TLKNCSIVAHVHDEIIIEADMRMSFSA- 192

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +   M   PSWA GL L A+GYE + Y+K
Sbjct: 193 -ICEQMARTPSWANGLLLSADGYECQFYQK 221


>gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
 gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
          Length = 239

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 121/289 (41%), Gaps = 63/289 (21%)

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TT 455
           +K F+   D+Y  + +  F+V   +  V    R  GK+ ELALGY G   A   + +  T
Sbjct: 1   MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIGALDT 60

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL+ +    LV +                                         WR  + 
Sbjct: 61  GLSEDELQPLVDS-----------------------------------------WRASNP 79

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV 573
            + + W ++ +  +  I   K   A +   +  VY       L ++LPSGR L Y    +
Sbjct: 80  NIVQFWWDVDRCVKTAI---KQRTATETHGIRFVY---QNGILFIVLPSGRRLCYVKPKI 133

Query: 574 GNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
           G N+      +Y    T ++  R  +YG K  ENIVQA+SRDIL   M   +     IV 
Sbjct: 134 GENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMRTLSHC--FIVG 191

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            VHDE++ ETP   +  A  +   +   P W  GL L+A+GYE+  Y+K
Sbjct: 192 HVHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238


>gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 169

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL+N ++   A N+ FER  L       +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEY 160
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQY 166


>gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 164

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 6/136 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET S ++L K G+ +YAE  D  V+LF +  D   V++ D V    +P+ + 
Sbjct: 20  LLNLEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVM 79

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114
            ALE+  VT  A N+ FER  +      +   +     W C++V +   GLP +L+ VG 
Sbjct: 80  SALEDEAVTKWAFNAQFERICISRMLGYEAGTYLVPASWKCSMVWSAYMGLPLSLEGVGA 139

Query: 115 ALKLSSQKMEEGKELI 130
            L L  QK+ EGK+LI
Sbjct: 140 VLGLEKQKLTEGKDLI 155


>gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 55/95 (57%), Gaps = 6/95 (6%)

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
           T ++  R  TYG KL ENIVQA SRD+LAE M      G  +V+ +HDE V + P    F
Sbjct: 2   TVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAP----F 57

Query: 643 NASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           N S+  +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 58  NRSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 92


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 174/414 (42%), Gaps = 46/414 (11%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++ +   E  D+  VAHN  F+  VLK     DI +   +   ++A     P        
Sbjct: 419 EIFRPFFEKEDLLKVAHNLKFDYKVLK---QYDITVKGAMFDTMIAHYLLNPDG------ 469

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKP--NHREA-WRLFGEYCKGDVTVTREI 171
                   M+   E+   +        +  + K   N R+A  R   +Y   D  VT ++
Sbjct: 470 -----RHGMDYLSEVYLNYKPVSIETIIGKKGKKQGNFRDADLRTQTDYAAEDADVTFQL 524

Query: 172 FKRLEPLSSKE--QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           ++   P   KE  +EL+Y           +++ L   L ++ ++    LD++   L    
Sbjct: 525 YELFAPQLKKENLEELFY----------NIEMPLMEVLAKM-ELSGISLDEKW--LAQES 571

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           V     L+ L+  +F  +G      +      +L    +L P+A +    +   S   + 
Sbjct: 572 VDLENDLKGLEAKIFELSGEEFNMNSPRQLGEILFEKMQLDPKAKKTKTGQYATSEDVLQ 631

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           KL++  E       ++  L++    +         P Q     +R H    Q        
Sbjct: 632 KLSSKHEI------IKHILEYRTYQKLKSTYVDALPSQIDKDDNRVHTNFSQTTAATGRL 685

Query: 350 ITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            + +P+    P++ +    +R   ++ EGKK++ AD + IE R++A ++GE+  +KAF+ 
Sbjct: 686 ASVNPNLQNIPIRTLRGQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQD 745

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           GED++ +T A+ F +  A+V+K QR+  K +   + Y  GA A   +A  TGL+
Sbjct: 746 GEDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGIIYGQGAFA---LAEQTGLS 796


>gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 180

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 21/177 (11%)

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           +WR  +  ++  W ++ +A + TI      I  + R +   Y       L + LPSGR L
Sbjct: 14  SWRNSNPMITAFWWDIDRAVKTTITQR---IQTEVRGICFFY---KSGMLFIKLPSGRLL 67

Query: 569 VYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            Y    +G N+      +Y    +T++  R  +YG K  ENIVQAVSRDIL   M     
Sbjct: 68  SYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVSRDILCYAMKTLRH 127

Query: 620 AGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               IV  VHDE++ E +PD D    +++   M  +P W   + L+A+GYE+  Y+K
Sbjct: 128 CF--IVGHVHDELIIECSPDVD---TNVICKQMGRSPDWMPDILLRADGYETNFYKK 179


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 116/270 (42%), Gaps = 37/270 (13%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD+         V  + T+L++EL +L  G   + R  ++L   LF E GL  +  T
Sbjct: 491 GIGVDLRSLAAFGAEVATDLTRLEKELHTLA-GHPFNPRSSQQLGEILFTEMGLTPKGKT 549

Query: 256 E----TTCQRVLSSNKKLTPQAIQVFNNR-MRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                +T Q  L       P   ++   R +   RS  L  + L +  ++DGR+  TL  
Sbjct: 550 PGGAASTSQDALERLAGSNPLVDRILEFRKLEKLRSTYL--DPLPKLADADGRIHTTLNN 607

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
           + A+ TGR S              S+  L  I    P            +   +R C +A
Sbjct: 608 M-ATATGRLSS-------------SNPNLQNIPIRGP------------LGRRMRECFVA 641

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             GK LV AD + IE RVLA ++GE   L AF  G D++  T +  F+   A++  D+R 
Sbjct: 642 GPGKTLVAADYSQIELRVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERR 701

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             K +   L Y  G    QK++   G+ L+
Sbjct: 702 QAKTINFGLLYGMGP---QKLSRDLGIKLD 728


>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
 gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
          Length = 913

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +       ++DP+ LQ I         +R   IA  G KLV AD + 
Sbjct: 635 PRTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQ 693

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  ++AF  GED++  T +  FNV P +V+ DQR + KV+   L Y  
Sbjct: 694 IELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINFGLIY-- 751

Query: 444 GAKAFQKMASTTGL 457
           G  AF  +AS  G+
Sbjct: 752 GMSAF-GLASNLGI 764


>gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
           T ++  R  TYG KL ENIVQA SRD+LA  M     AG  +V+ +HDE V + P TD  
Sbjct: 2   TVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAP-TDR- 59

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +   +  +MT  P WA GL L A G+    Y+K
Sbjct: 60  SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 92


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 141/316 (44%), Gaps = 27/316 (8%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +Y   D  +T ++++   P   KE+        + +  Y +++ L   L ++ ++    L
Sbjct: 503 QYAAEDADITFQLYEIFSPQLKKEE--------VEEVFYKIEMPLVKVLAKM-ELTGVAL 553

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           D+E   L    +S  + L+ L+  +F + G      +      +L    KL P+A +   
Sbjct: 554 DEEW--LKDESISLEQDLKILEGQIFEQAGEEFNINSPKQLGDILFEKLKLDPKAKKTKT 611

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            +   S   + KL+   E       ++  L++    +         P Q  P   R H  
Sbjct: 612 GQYSTSEDVLQKLSHKHEI------IKLILEYRQLQKLKSTYVDALPNQISPIDGRVHTS 665

Query: 339 LDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             Q +       +++P+ LQ I         VR   +A +G K+V AD + IE R++A +
Sbjct: 666 FAQTVAATGRLASNNPN-LQNIPIRTERGQQVRGAFVAPKGSKIVSADYSQIELRLIAEI 724

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +GE+  +KAF+ G+D++ +T ++ F+V   +V+K QR+  K +   + Y  G  AF  +A
Sbjct: 725 SGEETMIKAFKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGIIY--GQSAF-ALA 781

Query: 453 STTGLNLNTFAHLVKT 468
             TGL+      L+ +
Sbjct: 782 DQTGLSRTDAKQLIDS 797


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 173/413 (41%), Gaps = 44/413 (10%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           ++ +E  E  DV+ VAHN  F+  +L+   F+L   +   +    L   +G    +  + 
Sbjct: 424 EIFREFFEKEDVSKVAHNLKFDYKILQQYGFSLKGLLFDTMIAHYLLNPDG-KHVIDYLS 482

Query: 114 EA-LKLSSQKMEEGKELIARFCKGE-THECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           E  L      +E    LI +  K + T   L    + N          Y   D  +T ++
Sbjct: 483 EIYLNYKPVALES---LIGKKGKNQLTFRSLTVEEQTN----------YAAEDADITWQL 529

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE-LESLTYGLV 230
           ++   P   KE         + D  Y V++ L   L ++ ++E   LD++ L   +  L 
Sbjct: 530 YEVFAPQLKKE--------NLEDLFYKVEMPLLRVLAKM-ELEGVALDEKWLAQESIDLE 580

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           +  R LE     +F    +     +      +L    KL P+A +    +   S   + K
Sbjct: 581 NDLRGLE---AKIFELADVEFNVNSPRQLGEILFEKLKLDPKAKKTKTGQYATSEDVLQK 637

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L+           ++  L++    +         P Q     +R H    Q         
Sbjct: 638 LSA------KHDIIKYILEYRTYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAATGRLA 691

Query: 351 TSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           + +P+    P++ +    +R   +A+EGKK++ AD + IE R++A ++ E+  + AF+ G
Sbjct: 692 SVNPNLQNIPIRTLRGQQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENMILAFQNG 751

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ED++V+T AR F++   +VTK QR   K +   + Y  GA A   +A  TGL+
Sbjct: 752 EDIHVSTAARLFDIPLEEVTKTQRGQAKTVNFGIIYGQGAFA---LAEQTGLS 801


>gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 310

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 142/365 (38%), Gaps = 98/365 (26%)

Query: 274 IQVFNNRMRA-SRSAVLKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGC-VFPPQ 327
           + +F  R RA S  AV +   LV+A+N    +D +L   L + GA  TGR+ G      Q
Sbjct: 9   LPIFEARERAKSNQAVSRAKKLVQAVNGRPNNDNKLVVPLVYYGA-HTGRYGGNEGLNLQ 67

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           NL R S                               R  + A  G+ + VAD + IEAR
Sbjct: 68  NLQRGSEH-----------------------------RKALTAPFGQLVYVADSSNIEAR 98

Query: 388 VLAWMAGEQWKLKAFETGEDLYVT--TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
           ++AW A E   L  F+ G D Y T  T    F V   Q  + +R +GKV  L L Y  GA
Sbjct: 99  IVAWFAQETALLNQFKNGIDTYATLATDIYGFPVT-KQTHQLERNVGKVARLGLQYGMGA 157

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           + F +   +  + +            P  W   E                        E+
Sbjct: 158 RTFHRTMESGPMGI-----------PPMPWAFPE-----------------------IEK 183

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           + K +R+ H  + + W   +Q  ++ I          R+D    +      +  L LP+G
Sbjct: 184 IVKTYRRTHPMIKKCWEIGNQIIQKMI----------RKDTLETWRCLTVRHQCLELPNG 233

Query: 566 RSLVYRDVGNNR--------------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
             L + ++ N                SY +  +++L  +  YGGKL ENI QA++   + 
Sbjct: 234 MYLQFPNLRNKEIQTAQGPQYEVVYDSY-DYKSKKLVEKRLYGGKLLENIAQALAGLAMK 292

Query: 612 EGMMN 616
           E M++
Sbjct: 293 EMMLD 297


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IAS G ++V AD + 
Sbjct: 639 PETGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHQIVSADYSQ 697

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +VT DQR I KV+   L Y  
Sbjct: 698 IELRIMAHISGDASLLRAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVINFGLIY-- 755

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 756 GMSAF-GLASNLGIT 769


>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
 gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
          Length = 913

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G KLV AD + IE R++A ++G++  ++AF  GED++  T +  FNV P +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLE 733

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V+ DQR + KV+   L Y  G  AF  +AS  G+ 
Sbjct: 734 VSSDQRRVAKVINFGLIY--GMSAF-GLASNLGIT 765


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 13/176 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q         ++DP+ LQ I         +R   IA EG  +V AD + 
Sbjct: 659 PRTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQ 717

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  ++AF  G+D++  T A  FNV P +VT DQR + KV+   L Y  
Sbjct: 718 IELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIY-- 775

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA-IEDLF 498
           G  AF  +AS  G+  +     +    A   +  A N+    +++  EH  +E +F
Sbjct: 776 GMSAF-GLASNLGIGRDAAKLYIDRYFA--RYPGAANYMEETRQSAREHGYVETVF 828


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 107/456 (23%), Positives = 169/456 (37%), Gaps = 119/456 (26%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +  RG  +D A  H    +V  E  +L + +     G   + R  ++L   LF   GL  
Sbjct: 475 MQKRGIRIDAARFHDFLGMVQAELDRLTRTIHE-QAGEEFNIRSSQQLAEVLFSRLGLAC 533

Query: 252 EDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
           +  T    ++T   VL       P    V   RM     +   L  + +  + +GR+  T
Sbjct: 534 KQKTPGGAQSTSSSVLEGLAAEHPIVADVLEFRMYEKLRSTY-LEPMPQLADKNGRIHTT 592

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
              L A+ TGR S      QN+P                   I     P       +RSC
Sbjct: 593 FNQL-ATATGRLSSSNPNLQNIP-------------------IRGALGP------RMRSC 626

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +AS G +LV AD + IE RVLA M+G+Q   +AF  G+D++  T    F+    +V+ D
Sbjct: 627 FVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGILFDT--TEVSAD 684

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           +R   K +   L Y  G    QK+    G++L                ++A+ F      
Sbjct: 685 ERRKAKTINFGLLYGMGP---QKLGRELGISL----------------KEAKEFI----- 720

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                                 +  K SRV E + E+ +A  +++     +  R+R    
Sbjct: 721 --------------------AVYFSKLSRVREFYEEI-EAGAKSLGYVTTLAGRRR---- 755

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                        MLP           N+R   NT   Q  R           +VQ  + 
Sbjct: 756 -------------MLPE---------INSR---NTNMAQQARRMA-----INTVVQGSAA 785

Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
           DI+ + M+   K+      G  ++L +HDE++ E P
Sbjct: 786 DIIKKAMLEVDKSPVIGELGASLILQIHDELLLEAP 821


>gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 143

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WR 155
           +V A + GLP +LK VG+ L L +QKM+EGK+LI  FC  + +     R  P+   A W+
Sbjct: 1   MVWAATLGLPLSLKDVGKVLNLDAQKMDEGKDLIKHFCVPDDNS---QRRLPSSDPAGWK 57

Query: 156 LFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           LF  Y   DV V   I ++L   P+     E + +DQ INDRG  +D  LA +   I + 
Sbjct: 58  LFQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTLAASAITIDEK 117

Query: 214 ERTK 217
            R +
Sbjct: 118 HRAQ 121


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 5/128 (3%)

Query: 330 PRPSRSHEELDQIITHLPTS--ITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEA 386
           P+  R H    Q    +PT     ++P+  QI   D  R C +A EG  LV+AD + IE 
Sbjct: 309 PKTGRIHASFLQ--CRVPTGRLACTNPNVQQIPHEDEFRRCFVAGEGNVLVIADYSQIEL 366

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA ++G+   ++AF  GEDL+  T A  F V   +VTK+QR+  K +   L Y  G +
Sbjct: 367 RILAEVSGDPGFVEAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINFGLAYGRGPR 426

Query: 447 AFQKMAST 454
           +      T
Sbjct: 427 SLAAQLGT 434


>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
 gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
          Length = 913

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G KLV AD + IE R++A ++G++  L+AF  GED++  T A  F+V P +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSEGEDIHRATAAEIFSVTPLE 733

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           V+ DQR + KV+   L Y  G  +F  +AS  G+
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGI 764


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G KLV AD + IE R++A ++G++  L+AF  GED++  T A  F+V P +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V+ DQR + KV+   L Y  G  +F  +AS  G+ 
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGIT 765


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 3/94 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G KLV AD + IE R++A ++G++  L+AF+ GED++  T +  F+V P +
Sbjct: 676 IREAFIAPPGHKLVSADYSQIELRIMAHISGDEALLRAFKQGEDIHRATASEVFSVTPLE 735

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           V+ DQR I KV+   L Y  G  +F  +AS  G+
Sbjct: 736 VSNDQRRIAKVINFGLIY--GMSSF-GLASNLGI 766


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G KLV AD + IE R++A ++G++  L+AF  GED++  T A  F+V P +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           V+ DQR + KV+   L Y  G  +F  +AS  G+
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGI 764


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q         ++DP+ LQ I         +R   IA EG  +V AD + 
Sbjct: 659 PRTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQ 717

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  ++AF  G+D++  T A  FNV P +VT DQR + KV+   L Y  
Sbjct: 718 IELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIY-- 775

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 776 GMSAF-GLASNLGIG 789


>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
 gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
          Length = 917

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IAS G ++V AD + 
Sbjct: 639 PSTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 698 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 756 GMSAF-GLASNLGIT 769


>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
 gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
          Length = 917

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IAS G ++V AD + 
Sbjct: 639 PTTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 698 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 756 GMSAF-GLASNLGIT 769


>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
 gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
          Length = 920

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IAS G ++V AD + 
Sbjct: 642 PTTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 701 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 758

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 759 GMSAF-GLASNLGIT 772


>gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 641

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IAS G ++V AD + 
Sbjct: 363 PATGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 421

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 422 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIY-- 479

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 480 GMSAF-GLASNLGIT 493


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IAS G ++V AD + 
Sbjct: 639 PATGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 698 IELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 756 GMSAF-GLASNLGIT 769


>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
 gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
          Length = 917

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IAS G ++V AD + 
Sbjct: 639 PATGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 698 IELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 756 GMSAF-GLASNLGIT 769


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IAS G ++V AD + 
Sbjct: 639 PATGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 698 IELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 756 GMSAF-GLASNLGIT 769


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IAS G ++V AD + IE R++A ++G+   L+AF  GED++  T A  F V P +
Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V  DQR I KV+   L Y  G  AF  +AS  G+ 
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAF-GLASNLGIT 769


>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
 gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
          Length = 917

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA+ G K+V AD + IE R++A ++G++  L+AF  GED++  T A  F V P +
Sbjct: 678 IREAFIAAPGCKIVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEVFGVTPLE 737

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V+ DQR I KV+   L Y  G  AF  +AS  G+ 
Sbjct: 738 VSTDQRRIAKVINFGLIY--GMSAF-GLASNLGIT 769


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 29/170 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L   M  DGR+R T   L A+ TGR S      QN+P                    
Sbjct: 584 LEPLPRLMGGDGRIRTTFNQL-ATATGRLSSSNPNLQNIPVRG----------------- 625

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                    +   +R+C  A EGKKL+ AD + IE RVLA ++ ++  L AF  G D++ 
Sbjct: 626 --------ALGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHA 677

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            T +  F+  P+++T DQR   K +   L Y  G    QK+A    + L+
Sbjct: 678 RTASLLFDAPPSEITPDQRRNAKTINFGLIYGMGP---QKLAQELKIPLS 724


>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
 gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
          Length = 913

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G KLV AD + IE R++A ++G++  L+AF  GED++  T A  F+V P +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V+ DQR + KV+   L Y  G  +F  +A+  G+ 
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLAANLGIT 765


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IAS G ++V AD + IE R++A ++G+   L+AF  GED++  T A  F V P +
Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAHGEDIHRATAAEVFGVTPLE 737

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V  DQR I KV+   L Y  G  AF  +AS  G+ 
Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAF-GLASNLGIT 769


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 921

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 26/156 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L+ L   M+ +GR+  T     A+ TGR S      QN+P                   +
Sbjct: 631 LDPLPRLMDGNGRIHTTFN-QKATATGRLSSSNPNLQNIP-------------------V 670

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             D      +   +R+C IA+ G  LV AD + +E RVLA M+ ++  L+AF  GED++ 
Sbjct: 671 RGD------LGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGEDIHA 724

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
            T A  +++AP QV+ DQR   K +   L Y  GA+
Sbjct: 725 RTAALVYDLAPDQVSPDQRRNAKTINFGLIYGMGAQ 760


>gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1]
 gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1]
          Length = 913

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G KLV AD + IE R++A ++G++  L++F  GED++  T A  F+V P +
Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V+ DQR + KV+   L Y  G  +F  +AS  G+ 
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGIT 765


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA+ G ++V AD + 
Sbjct: 642 PSTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 701 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIY-- 758

Query: 444 GAKAFQKMASTTGL 457
           G  AF  +AS  G+
Sbjct: 759 GMSAF-GLASNLGI 771


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA+ G ++V AD + 
Sbjct: 642 PSTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 701 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIY-- 758

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 759 GMSAF-GLASNLGIT 772


>gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R C +A+ GKKLV AD + IE RVLA ++GE   L AFE G D++  T A  F+ A A 
Sbjct: 639 MRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEAD 698

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +  D+R   K +   L Y  G    QK++   G+ L+     ++     E       F +
Sbjct: 699 IRPDERRQAKTINFGLLYGMGP---QKLSRDLGIKLDAAKAFIEKYF--ERLSGLSTFYQ 753

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL-HQAFEQTIENGKAII 539
            + +          F+ T   R ++   + HS  S+L ++   QA    ++ G A I
Sbjct: 754 GIVDTAKAQG----FVTTLAGR-RRLLPEIHSANSQLASQARRQAINTVVQGGAADI 805


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA+ G ++V AD + 
Sbjct: 639 PSTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQ 697

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 698 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIY-- 755

Query: 444 GAKAFQKMASTTGL 457
           G  AF  +AS  G+
Sbjct: 756 GMSAF-GLASNLGI 768


>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
 gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
          Length = 917

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA+ G ++V AD + 
Sbjct: 639 PTTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQ 697

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y  
Sbjct: 698 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 756 GMSAF-GLASNLGIT 769


>gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15]
          Length = 868

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +T      +S+P+ LQ I         +R   IA EG KLV AD + I
Sbjct: 590 RTGRVHTSYHQAVTATGRLSSSEPN-LQNIPIRSEQGRRIRQAFIAPEGYKLVAADYSQI 648

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  LKAFE GED++  T +  F V+   V+ DQR   K +   L Y  G
Sbjct: 649 ELRIMAHLSGDKGLLKAFEKGEDIHKATASEVFGVSLDDVSSDQRRSAKAINFGLIY--G 706

Query: 445 AKAF 448
             AF
Sbjct: 707 MSAF 710


>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 897

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 70/149 (46%), Gaps = 28/149 (18%)

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR+  T    GA+ TGR S      QN+P           + T L             
Sbjct: 620 ADGRIHTTFHQAGAA-TGRLSSSDPNLQNIP-----------VRTEL------------- 654

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            S  +R   +A  G +L+ AD + IE R+LA  + +   L+AF   ED++  T A +F V
Sbjct: 655 -SRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGV 713

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448
           AP QVT DQR I KV+   + Y  G  AF
Sbjct: 714 APEQVTPDQRRIAKVLNFGIAY--GLSAF 740


>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
 gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
          Length = 897

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 70/149 (46%), Gaps = 28/149 (18%)

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR+  T    GA+ TGR S      QN+P           + T L             
Sbjct: 620 ADGRIHTTFHQAGAA-TGRLSSSDPNLQNIP-----------VRTEL------------- 654

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            S  +R   +A  G +L+ AD + IE R+LA  + +   L+AF   ED++  T A +F V
Sbjct: 655 -SRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGV 713

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448
           AP QVT DQR I KV+   + Y  G  AF
Sbjct: 714 APEQVTPDQRRIAKVLNFGIAY--GLSAF 740


>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
          Length = 926

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA  G K+V AD + 
Sbjct: 648 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQ 706

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L+AF  GED++  T A  F V P +VT DQR I KV+   L Y  
Sbjct: 707 IELRIMAHISEDESLLRAFANGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 764

Query: 444 GAKAFQKMASTTGLN 458
           G  +F  +AS  G+ 
Sbjct: 765 GMSSF-GLASNLGIT 778


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 128/319 (40%), Gaps = 76/319 (23%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P+ +R H + +Q IT      +S+P+   I      S  +R   I  +G  LV AD + I
Sbjct: 664 PKTARVHTDFNQTITSTGRLSSSNPNLQNIPVRSEFSRRIRQAFIPEDGYLLVSADYSQI 723

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E   L+A+ + +D++  T    F+    ++T ++R++GK +   + Y  G
Sbjct: 724 ELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFD--KGEITPEERSLGKTINFGVIYGMG 781

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A+ F + +  T                                                E
Sbjct: 782 AQKFARESKLT-----------------------------------------------VE 794

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILML 562
           + +K   + H R ++++  L  + +Q I  G  + I+ R+R      Y   D N L+  L
Sbjct: 795 QGRKFIEKYHQRYAQVFQYLENSKKQAIAQGYVETILGRRR------YFNFD-NPLLKRL 847

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              R L   D+  +   LN    QL R            +Q  S DI+   M+   +   
Sbjct: 848 ---RGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQ 898

Query: 623 D----IVLTVHDEIVCETP 637
           +    ++L VHDE+V E P
Sbjct: 899 NYRARLLLQVHDELVLEVP 917


>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
 gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
          Length = 913

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G KLV AD + IE R++A ++G++  L +F  GED++  T A  F+V P +
Sbjct: 674 IREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQGEDIHRATAAEIFSVTPLE 733

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V+ DQR + KV+   L Y  G  +F  +AS  G+ 
Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGIT 765


>gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158]
 gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158]
          Length = 248

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA+ G ++V AD + IE R++A ++G+   L+AF  GED++  T A  F V P +
Sbjct: 9   IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 68

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           V  DQR I KV+   L Y  G  AF  +AS  G+
Sbjct: 69  VNADQRRIAKVINFGLIY--GMSAF-GLASNLGI 99


>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
 gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
          Length = 911

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +T      +S+P+ LQ I         +R   +A EG KLV AD + I
Sbjct: 633 RTGRIHTSYHQAVTATGRLSSSEPN-LQNIPIRSEQGRRIRQAFVAPEGYKLVAADYSQI 691

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  L AFE GED++  T A  F VA   V+ DQR   K +   L Y  G
Sbjct: 692 ELRIMAHLSGDKGLLTAFEKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINFGLIY--G 749

Query: 445 AKAF 448
             AF
Sbjct: 750 MSAF 753


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 174/444 (39%), Gaps = 94/444 (21%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--DIPIHRWICTLVLAR 101
           ++D    P   + LKE LEN  V  + HN  F+   LK  F +   I     I + +L+ 
Sbjct: 59  VYDMFRIPQFSEHLKELLENKGV--IGHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLSE 116

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            +    +L A+  + +L+   +++ ++      K  T E L                 Y 
Sbjct: 117 DSREKHSLSAL--SYRLTDNHLDKSQQRSPWGIKNLTEEQL----------------RYA 158

Query: 162 KGDVTVTREIF-------KRLE---PLSSKEQELWYLDQ--------------TINDRGY 197
             DV V REIF        R+E     + K  E + LD                I  RG 
Sbjct: 159 AKDVQVLREIFPVLRDELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGM 218

Query: 198 CVDVALAHTLNQIV--DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
            VD  L   + Q V  D +R  +D       YG+   S   +K+  WL  + GL L    
Sbjct: 219 PVDEKLLKDMLQKVSTDYQREYIDF---VRRYGVDPFSP--QKVTNWLTSKLGLKLP--- 270

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNR----MRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
            TT +  LSS      + I     R    +R+ +  + KL  L +A   +GR+    + +
Sbjct: 271 -TTQKGSLSSQDSALRRYIDREEVRKLLHIRSEKKILDKLKEL-KAHLINGRIYTQFKQI 328

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           GA  TGR +          RP+                       LQ I+  +R      
Sbjct: 329 GAP-TGRMASM--------RPN-----------------------LQNITRDLRVLFRPP 356

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EGKKL+VAD + IE R+ A    ++  +KAF  G+DL+  T +        Q+TKD+R +
Sbjct: 357 EGKKLIVADYSQIELRIAAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQM 416

Query: 432 GKVMELALGYQGGAKAFQKMASTT 455
            K +   L Y    ++  + A  +
Sbjct: 417 AKAINFGLIYGISPRSLMEYARNS 440


>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
 gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
          Length = 911

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 9/150 (6%)

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
           R  L++ G S+         P    PR  R H    Q +       +SDP+ LQ I    
Sbjct: 607 RVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVAATGRLSSSDPN-LQNIPVRN 665

Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   IA +G KL+ AD + IE R++A ++G++  LKAF  G D++  T A  FN
Sbjct: 666 EQGRRIRQAFIAPKGCKLISADYSQIELRIMAHLSGDEGLLKAFSEGLDVHQATAAEVFN 725

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           VA  +V+ +QR   K +   L Y  G  AF
Sbjct: 726 VAFDEVSSEQRRKAKAINFGLIY--GMSAF 753


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L + G S+         P    P   R H    Q +       ++DP+ LQ I       
Sbjct: 614 LDYRGMSKLKTTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPN-LQNIPIRSEEG 672

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IAS G K++ AD + IE R++A ++ +   LKAF  G+D++  T +  F++ P
Sbjct: 673 RRIREAFIASPGNKIISADYSQIELRIMAHLSDDASLLKAFHDGQDVHRATASEIFDITP 732

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +VT DQR   KV+   L Y  G  AF  +AS  G++
Sbjct: 733 LEVTSDQRRYAKVINFGLIY--GMSAF-GVASNLGIS 766


>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
          Length = 926

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA  G K+V AD + 
Sbjct: 648 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQ 706

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L+AF  GED++  T A  F V P +VT DQR I KV+   L Y  
Sbjct: 707 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 764

Query: 444 GAKAFQKMASTTGLN 458
           G  +F  +AS  G+ 
Sbjct: 765 GMSSF-GLASNLGIT 778


>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
          Length = 926

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA  G K+V AD + 
Sbjct: 648 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQ 706

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L+AF  GED++  T A  F V P +VT DQR I KV+   L Y  
Sbjct: 707 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 764

Query: 444 GAKAFQKMASTTGLN 458
           G  +F  +AS  G+ 
Sbjct: 765 GMSSF-GLASNLGIT 778


>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
          Length = 926

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA  G K+V AD + 
Sbjct: 648 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQ 706

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L+AF  GED++  T A  F V P +VT DQR I KV+   L Y  
Sbjct: 707 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 764

Query: 444 GAKAFQKMASTTGLN 458
           G  +F  +AS  G+ 
Sbjct: 765 GMSSF-GLASNLGIT 778


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EGKK+V AD + IE R++A ++ ++  LKAF   +D++  T A  F VAP Q
Sbjct: 691 IRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLKAFSEEQDVHRATAAEVFGVAPEQ 750

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT D R   K +   L Y  G  +F  +A   GL+ +     +    A   +   +N+  
Sbjct: 751 VTTDLRRSAKAINFGLIY--GMSSF-GLAQQLGLSRSQAQSYIDLYFA--RYPGVKNYMD 805

Query: 484 WMQENHPEHA-IEDLF 498
            ++E   E   IE LF
Sbjct: 806 RIREQAREQGYIETLF 821


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IAS G ++V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 680 IREAFIASPGCRIVSADYSQIELRIMAHISEDESLLRAFSQGEDIHRATAAEVFGVTPLE 739

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V+ DQR I KV+   L Y  G  AF  +AS  G+ 
Sbjct: 740 VSNDQRRIAKVINFGLIY--GMSAF-GLASNLGIT 771


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 121/291 (41%), Gaps = 49/291 (16%)

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E+F+RLE        L  +   +   G  +D A        +D  + +LDQ L +  Y L
Sbjct: 512 ELFRRLE------MPLLPVLAGMEQSGVAIDAA---AFRAFLDDVQGQLDQ-LTAHVYEL 561

Query: 230 VSSS---RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR-M 281
             +    R  ++L   LF   GL     T+    +T Q+ L       P    +   R +
Sbjct: 562 AGTQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQHPVVDSILQYRKL 621

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              RS  L  + L   ++  GR+  T     A+ TGR S              S+  L  
Sbjct: 622 EKMRSTYL--DPLPRLVDPQGRIHTTFN-QKATATGRLSS-------------SNPNLQN 665

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           I    P            +   +RSC IA  G+ LV AD + +E RVLA ++ +   L+A
Sbjct: 666 IPVRGP------------LGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEA 713

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           F  GED++  T A  +++ P QV+ DQR   K +   L Y  GA   QK+A
Sbjct: 714 FRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFGLIYGMGA---QKLA 761


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 100/237 (42%), Gaps = 43/237 (18%)

Query: 216 TKLDQELESLTYGLVSSS---RCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL 269
           T+  QEL    Y L   +      ++L   LF   GL +   T+T   T   VL +    
Sbjct: 688 TRRSQELAEQIYQLAGETFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAAR 747

Query: 270 TPQAIQVFNNRMRASRSAVLKL-----NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            P A  V   R      +++KL     + L E +  DGR+  T Q   A+ TGR S    
Sbjct: 748 HPIAELVLEYR------SLVKLQGTYVDGLAEHIGPDGRVHTTFQQTVAA-TGRLSSTQP 800

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I  +P         +R   +A  G +LV AD + I
Sbjct: 801 NLQNIP-------------------IRDEP------GRSLRRAFVAPPGHRLVAADYSQI 835

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA  +G++  L+AF  G+D++  T +  F V   QVT +QR + K +   L Y
Sbjct: 836 ELRVLAHYSGDEGLLEAFARGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAY 892


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 922

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I +       +R+  IA+ G  L+ AD + IE R+
Sbjct: 647 RIHTTFHQTLTQTGRLSSSDPNLQNIPARTEEGRRIRAAFIAAPGCILIDADYSQIELRL 706

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++G+   LKAF   ED++  T AR F++ P  VT + R +GK +  ++ Y  G  AF
Sbjct: 707 LAHLSGDTAMLKAFAAKEDIHALTAARVFHMDPVDVTSEHRRVGKTINFSIVY--GISAF 764


>gi|309784631|ref|ZP_07679266.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
 gi|308927528|gb|EFP73000.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
          Length = 66

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%), Gaps = 5/58 (8%)

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLY 409
           +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF      T  DLY
Sbjct: 1   MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTDPDLY 58


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA+ G K+V AD + 
Sbjct: 645 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQ 703

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L+AF  GED++  T A  F V P +VT DQR I KV+   L Y  
Sbjct: 704 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 761

Query: 444 GAKAFQKMASTTGLN 458
           G  +F  +AS  G+ 
Sbjct: 762 GMSSF-GLASNLGIT 775


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   IA+ G K+V AD + 
Sbjct: 645 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQ 703

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L+AF  GED++  T A  F V P +VT DQR I KV+   L Y  
Sbjct: 704 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 761

Query: 444 GAKAFQKMASTTGLN 458
           G  +F  +AS  G+ 
Sbjct: 762 GMSSF-GLASNLGIT 775


>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 897

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 28/149 (18%)

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR+  T    GA+ TGR S      QN+P           + T L             
Sbjct: 620 ADGRIHTTFHQAGAA-TGRLSSSDPNLQNIP-----------VRTEL------------- 654

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            S  +R   +A  G +L+ AD + IE R+LA  + +   L+AF   ED++  T A +F V
Sbjct: 655 -SRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGV 713

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448
            P QVT DQR I KV+   + Y  G  AF
Sbjct: 714 PPEQVTPDQRRIAKVLNFGIAY--GLSAF 740


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 140/331 (42%), Gaps = 68/331 (20%)

Query: 158 GEYCKGDVTVTREIFKRLEP-LSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDV 213
           G+Y   DV  T  + + L+P L +++QE  + +  +      +D   V +A  ++ + D+
Sbjct: 473 GDYACADVEATYRLVEVLQPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDL 532

Query: 214 ERTKLDQ--ELESLTYGL------VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRV 262
            R    Q  ELE   YGL      ++S+R   +L T LF E GL     T+T     Q V
Sbjct: 533 SRQLTGQLAELEREIYGLAKHEFNINSTR---QLATVLFDELGLPAGRRTKTGYSVSQEV 589

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           L + +   P    +   R       +LKL +T V+A+                       
Sbjct: 590 LENLRHAHPIVDCILEYRQ------LLKLKSTYVDAL----------------------- 620

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS----- 371
              P Q  P   R H   +Q I       ++DP+   I     +   VR   IA      
Sbjct: 621 ---PEQVNPETGRIHTSFNQTIAATGRLSSTDPNLQNIPVRTELGRSVRRAFIADNRPGY 677

Query: 372 ----EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
               E   L+ AD + IE R++A ++G++  + AF  G+D++  T A  F V   QVT D
Sbjct: 678 RPFDEEAVLLSADYSQIELRLMAHLSGDERLVHAFREGQDIHAATAADVFGVPLEQVTPD 737

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            R + K +   + Y  G +A+  +A  TG++
Sbjct: 738 MRRVAKTVNFGIMY--GMQAY-GLARDTGMS 765


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 386 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 445

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 446 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 477


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q IT      +++P+ LQ I         VR   IA  G K+V AD + 
Sbjct: 649 PRSGRVHTSYHQAITATGRLSSTEPN-LQNIPIRTEQGRRVRQAFIARPGYKIVAADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  LKAF  G+D++  T A  FNV+  +VT +QR   K +   L Y  
Sbjct: 708 IELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVFNVSLTEVTTEQRRNAKAINFGLIY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1]
          Length = 845

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 118/271 (43%), Gaps = 37/271 (13%)

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLET 247
           ++ D G C+D          +    T++ +E + + Y     S  +   ++L T LF E 
Sbjct: 457 SMEDIGICIDKQGVEDFGTYL----TEMIEETQQMVYDDAGHSFNIASPKQLGTVLFEEM 512

Query: 248 GLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
           GL  +  T++   T   VL   +   P    V   R     ++   +  L++ +  DGR+
Sbjct: 513 GLPAKKKTKSGYSTNAEVLEELRNDAPIVDNVLKFRQYTKLNSTYVVG-LLDKIADDGRI 571

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
               +    +RTGR S      QN+P           + T L   +              
Sbjct: 572 HTWFR-QTETRTGRISSTEPNMQNIP-----------VRTELGAQM-------------- 605

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A +G+KLV AD + IE RV+A + G++  ++AF +GED++ +T A+ F++    V
Sbjct: 606 RKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAFNSGEDIHTSTAAQVFDMPSIMV 665

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           T + R+  K +   + Y  GA +  K   T+
Sbjct: 666 TPEMRSAAKAVNFGIIYGIGAFSLAKDIGTS 696


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 379 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 438

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 439 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 470


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 381 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 440

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 441 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 472


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 380 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 439

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 440 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 471


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 637 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 696

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 697 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 728


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 383 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 442

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 443 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 474


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 383 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 442

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 443 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 474


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
 gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
          Length = 936

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H   +QI        +++P+ LQ I         +R   +A+ G + V AD + 
Sbjct: 657 PRTGRIHTSYNQIGAATGRLSSNNPN-LQNIPVRTEEGREIRRAFVAAPGHRFVAADYSQ 715

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA ++G++  + AF+ G D++  T +R F VAP QV K+QR + K +   + Y  
Sbjct: 716 IELRVLAHISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVIY-- 773

Query: 444 GAKAF 448
           G  AF
Sbjct: 774 GISAF 778


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K+V AD + IE R++A ++ ++  L+AF  GED++  T A  F V P +
Sbjct: 687 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT DQR I KV+   L Y  G  +F  +AS  G+ 
Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 778


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 127/319 (39%), Gaps = 76/319 (23%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P+ +R H + +Q IT      +S+P+   I      S  +R   I   G  LV AD + I
Sbjct: 664 PKTARVHTDFNQTITSTGRLSSSNPNLQNIPIRSEFSRRIRQAFIPENGYLLVSADYSQI 723

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E   L+A+ + +D++  T    F+    ++T ++R++GK +   + Y  G
Sbjct: 724 ELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFD--KREITPEERSLGKTINFGVIYGMG 781

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A+ F + +  T                                                E
Sbjct: 782 AQKFARESKLT-----------------------------------------------VE 794

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILML 562
           + +K   + H R ++++  L  + +Q I  G  + I+ R+R      Y   D N L+  L
Sbjct: 795 QGRKFIEKYHQRYAQVFEYLENSKKQAITQGYVETILGRRR------YFNFD-NPLLKRL 847

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              R L   D+  +   LN    QL R            +Q  S DI+   M+   +   
Sbjct: 848 ---RGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQ 898

Query: 623 D----IVLTVHDEIVCETP 637
           +    ++L VHDE+V E P
Sbjct: 899 NYRARLLLQVHDELVLEVP 917


>gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 92

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 4  LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
          LF D ET S I +  CG  +YAE+  ++LFA+ ++   V++WD   D  MP  LK   + 
Sbjct: 5  LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63

Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPI 90
           ++  V HN   F+  +LK   N+D+P+
Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLPL 91


>gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium]
          Length = 803

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 34/274 (12%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           EQ L  + Q IN  G  +D A    L+  +  E T L+ ++ +   G   +    +++  
Sbjct: 394 EQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHA-GREFNINSPKQMGE 452

Query: 242 WLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            LF E GL  ++  +T      T +  L   ++  P   ++   R    +     ++ L 
Sbjct: 453 VLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYR-ELQKLVSTYIDNLP 511

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
             +++DGRLR T    GA+ TGR +      QN+P   R+ E                  
Sbjct: 512 PLVSADGRLRTTFVQTGAA-TGRMASQNPNLQNIP--IRTEE------------------ 550

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                S  +R   +AS G  +V  D + IE R+ A ++ ++  ++ F  GED++     R
Sbjct: 551 -----SKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVAVR 605

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            F V P +VT++ R   KV+   + Y  G  A +
Sbjct: 606 VFGVTPEEVTREMRRKAKVINFGILYGMGVNALR 639


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           +Q+ G S+         P Q      R H    Q +T      +SDP+ LQ I       
Sbjct: 594 MQYRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRSENG 652

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +AS G  L+ AD + IE R++A ++G++  LKAF  GED++  T +  F++A 
Sbjct: 653 RRIREAFVASNGYTLLAADYSQIELRIMAHLSGDESLLKAFAAGEDIHRHTASEIFDIAL 712

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK 450
             V+ DQR   K +   L Y   A    K
Sbjct: 713 EDVSSDQRRSAKAINFGLIYGMSAHGLSK 741


>gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
 gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
          Length = 880

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 26/148 (17%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L +A++ DGR+R T +    + TGR S      QNLP                   I +D
Sbjct: 597 LEKAIDDDGRIRSTFR-QNIAATGRLSSQDPNLQNLP-------------------IKTD 636

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
              L      +R    A +GK L+ AD + IE R+LA ++G++  ++AF  GED++  T 
Sbjct: 637 EGRL------IRKAFKAGQGKILIDADYSQIELRILASLSGDEHMIEAFRNGEDIHAKTA 690

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ F+    +VTK QR+  K +   + Y
Sbjct: 691 SKVFHTPLDEVTKRQRSDAKAVNFGIIY 718


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +T      +S+P+ LQ I         +R   IA +G KL+ AD + I
Sbjct: 630 RTGRVHTSYHQAVTATGRLSSSEPN-LQNIPIRTQEGRRIRQAFIAPKGYKLLAADYSQI 688

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  L AFE GED++  T A  F V   +VT DQR   K +   L Y  G
Sbjct: 689 ELRIMAHLSGDRGLLTAFEHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIY--G 746

Query: 445 AKAF 448
             AF
Sbjct: 747 MSAF 750


>gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
 gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
          Length = 845

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380
           PQ +   SR H   +Q+ T      +S P+   I         +R C +A EG +LV AD
Sbjct: 563 PQKVDDTSRLHTHFNQLATATGRLSSSGPNLQNIPIRGEFGPRMRQCFVAPEGSRLVAAD 622

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA ++ +   L+AF  GED++  T A   ++A   V  + R   K +   L 
Sbjct: 623 YSQIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIADEHVDSEARRQAKTINFGLL 682

Query: 441 YQGGAKAFQKMASTTGLNLN 460
           Y  G    QK++   G++LN
Sbjct: 683 YGMGP---QKLSRELGISLN 699


>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
 gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
          Length = 908

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVVADLAGI 384
           PR  R H    Q +T      +SDP+    P++ +    +R   IA E   +V AD + I
Sbjct: 630 PRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRSVEGRAIRKAFIAPENHVIVAADYSQI 689

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G+   L AF  G D++  T A  F VA  +VT DQR   K +   L Y  G
Sbjct: 690 ELRIMAHLSGDAGLLTAFNEGLDVHAATAAEVFGVALDEVTSDQRRSAKAINFGLIY--G 747

Query: 445 AKAF 448
             AF
Sbjct: 748 MSAF 751


>gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ]
 gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ]
          Length = 908

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +T      +SDP+ LQ I         +R   +A EG +LV
Sbjct: 624 LPQQINPRTGRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTTEGRRIRQAFVAPEGYRLV 682

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A +A +   L AF    D++  T A  F VAP  V+ DQR   K +  
Sbjct: 683 AADYSQIELRIMAHLAQDTSLLHAFRNDLDVHRATAAEVFGVAPEAVSADQRRSAKAINF 742

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 743 GLIY--GMSAF 751


>gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
 gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
          Length = 889

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 109/260 (41%), Gaps = 41/260 (15%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQ----ELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           G  VD         ++D ER   DQ    EL   T+ + S+    ++L   LF + GL  
Sbjct: 506 GMLVDRKALSEFGDMLD-ERIAADQAEIYELAGETFNINST----QQLGKILFDKLGLPP 560

Query: 252 EDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+T   T   VL   +   P   ++   R      +   ++ L + +  DGR+  + 
Sbjct: 561 VKKTKTGYSTNAEVLEKLRGQHPIIDKILEYRQYTKLKSTY-VDGLGKVIAPDGRIHTSF 619

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
           Q    + TGR S      QN+P  +    EL                         R   
Sbjct: 620 QNT-VTATGRLSSTEPNLQNIPVRTELGAEL-------------------------RKMF 653

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  GK LV AD + IE R+LA +AG++  ++AF TGED++  T A+ F V   QVTK  
Sbjct: 654 VAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRTGEDIHTVTAAQVFGVPVDQVTKHM 713

Query: 429 RAIGKVMELALGYQGGAKAF 448
           R+  K +   + Y  G  AF
Sbjct: 714 RSSAKAVNFGIVY--GISAF 731


>gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 95/232 (40%), Gaps = 33/232 (14%)

Query: 216 TKLDQELESLTYGLVSSS---RCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL 269
           T+  QEL    Y L   +      ++L   LF   GL +   T+T   T   VL +    
Sbjct: 700 TRRSQELAEQIYELAGQTFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAAR 759

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P A  V   R          ++ L E +  DGR+  T Q   A+ TGR S      QN+
Sbjct: 760 HPIAELVLEYRSLVKLQGTY-VDGLAEHIGPDGRIHTTFQQTVAA-TGRLSSTQPNLQNI 817

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P                   I  +P         +R   +A  G +LV AD + IE RVL
Sbjct: 818 P-------------------IRDEP------GRSLRRAFVAPPGHRLVAADYSQIELRVL 852

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A  +G+   ++AF  G+D++  T +  F V   QVT +QR + K +   L Y
Sbjct: 853 AHYSGDPGLVEAFAQGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAY 904


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 29/170 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L + +N++GR+      L A+ TGR S      QN+P                   I
Sbjct: 618 LEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPNLQNIP-------------------I 657

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             D          +R+C  A EG +L  AD + +E RVLA  +G+   + AFE  ED++ 
Sbjct: 658 RGDQ------GKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSAFEHDEDIHS 711

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            T A  F+  PA VT D+R   K +   L Y  G    QK++   G+ +N
Sbjct: 712 RTAALLFDRDPADVTSDERRNAKTINFGLIYGMGP---QKLSRELGIKIN 758


>gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
 gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
          Length = 874

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 32/252 (12%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF++ GL  +  T+T   T   VL + +   P   ++   R + S+     ++ 
Sbjct: 532 KQLGDVLFVKLGLPAKKKTKTGYSTNVDVLEALRPQHPIIGEILEYR-KLSKLKSTYVDG 590

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ +  DGR+R T Q    +RTGR S      QN+P  +     + +  T  P      
Sbjct: 591 LLKVVGPDGRVRSTFQQT-ETRTGRISSTEPNLQNIPIRTEEGSRMRRFFTARP------ 643

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                              G KLV AD + IE RVLA +A +Q  + AF++GED++ TT 
Sbjct: 644 -------------------GWKLVDADYSQIELRVLADLADDQNMIAAFQSGEDIHATTA 684

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTNSA 471
           A+ F +    VT   R+  K +   + Y  GA +  +    T    +++  ++L      
Sbjct: 685 AQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGAFSLSQDIGVTVSEADSYIKSYLAHYAGV 744

Query: 472 PEEWEDAENFCR 483
            +  ED   F R
Sbjct: 745 RKYMEDTIAFAR 756


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       ++DP+ LQ I         +R   +A  G K+V AD + 
Sbjct: 337 PDTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQ 395

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++  ++ ++  L+AF  GED++  T A  F V P +VT DQR I KV+   L Y  
Sbjct: 396 IELRIMLHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 453

Query: 444 GAKAFQKMASTTGLN 458
           G  +F  +AS  G+ 
Sbjct: 454 GMSSF-GLASNLGIT 467


>gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      + DP+ LQ I         +R   IASEG +++ 
Sbjct: 646 PQMVHPLTKRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIASEGYRIMA 704

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ +Q  LKAF  G+D++  T A  F+V   QVT +QR   K +   
Sbjct: 705 ADYSQIELRIMAHLSQDQGLLKAFAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFG 764

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 765 LIY--GMSAF 772


>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
 gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
          Length = 892

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H   +Q IT+     +SDP+ LQ I         +R   IA  G  ++ AD + 
Sbjct: 614 PKTGRVHTSYNQAITNTGRLSSSDPN-LQNIPVRGEEGRGIRRAFIAEPGSLILSADYSQ 672

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA ++G++   +AF  GED++  T A  F + P  VT + R   KV+   + Y  
Sbjct: 673 IELRVLAHLSGDRVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQAKVINFGVIYGQ 732

Query: 444 GAKAFQK 450
           GA +  K
Sbjct: 733 GAFSLAK 739


>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
 gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
          Length = 930

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P+  R H    Q +       +++P+ LQ I         VR    A +G  +V
Sbjct: 644 LPEMIFPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 702

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +  
Sbjct: 703 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINF 762

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+  TF
Sbjct: 763 GLIYGMGQYGLAKSLGIDNLSAKTF 787


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 9/141 (6%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVA 379
           PQ + P   R H    Q +T      +SDP+   I I +     +R   +A +G K++ A
Sbjct: 493 PQMINPATGRIHTSYHQAVTATGRLSSSDPNLQNIPIRNAEGRRIRQAFVAPKGYKILAA 552

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++G++  L+AF  G+D++  T A  F V   QVT++QR   K +   L
Sbjct: 553 DYSQIELRIMAHLSGDEGLLEAFNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGL 612

Query: 440 GYQGGAKAFQKMASTTGLNLN 460
            Y  G  AF  +A   G+  N
Sbjct: 613 IY--GMSAF-GLAKQLGVGRN 630


>gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
 gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
          Length = 839

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 123/289 (42%), Gaps = 47/289 (16%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTIND-----------RGYCVDVALAHTLNQIVDVERTK 217
           RE+  RLE     E+ LW+L + +             RG  +DV     L+Q +  E  +
Sbjct: 422 REMSDRLE----GEERLWWLYREVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELER 477

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           L+ E+  L  G   +    ++L+T L+ E GL     T  T +R  S++   T       
Sbjct: 478 LEAEIHRLA-GHPFNLNSRDQLETVLYDELGLAAGRRTAKTGKRSTSASVLET------- 529

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
              +R +   V K+    E      +L+GT  +L             P    PR  R H 
Sbjct: 530 ---LRGAHPIVEKILQYREL----AKLKGT--YLDP----------LPKLVHPRTGRLHT 570

Query: 338 ELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q  T      +SDP+    P++  I   +R   +A EG  LVVAD + IE RVLA +
Sbjct: 571 RFHQTGTATGRLSSSDPNLQNIPIRTEIGRRIRKGFVAGEGYLLVVADYSQIELRVLAHL 630

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +G++  ++ F+ G D++  T A  F V   +V   +R   K +   + Y
Sbjct: 631 SGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAAKTINFGVLY 679


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q IT      +++P+    P+++ I   +R+  ++ + K+LV AD + +
Sbjct: 613 PIDGRIHSTFNQTITTTGRISSTEPNLQNIPVRMEIGRRLRAVFVSDDEKRLVDADYSQV 672

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA M+G+Q  + AF+ GED++  T ++ FNV   +VT + R+  K +   + Y
Sbjct: 673 ELRVLAHMSGDQNMIDAFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIY 729


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA++G K+V AD + 
Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA++G K+V AD + 
Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 48/82 (58%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   +A+ G KLV AD + IE R++A ++G+   LKAF  G D++  T A  FN+A A 
Sbjct: 695 VREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLKAFADGMDVHRATAAEVFNIAAAD 754

Query: 424 VTKDQRAIGKVMELALGYQGGA 445
           VT +QR   K +   L Y  GA
Sbjct: 755 VTSEQRRYAKTINFGLIYGMGA 776


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA++G K+V AD + 
Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 11/152 (7%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376
            P Q  PR  R H E  Q +       +++P+ LQ I        +  ++ V   E   L
Sbjct: 657 LPKQIHPRTKRVHTEFMQTVAATGRLSSNNPN-LQNIPIRTERGREVRKAFVPRDENYVL 715

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++ E+  + AF+ GED++ +T AR F V   +VT+ QR+  K + 
Sbjct: 716 LAADYSQIELRIIAALSQEKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTVN 775

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + Y  G  AF  +++ T L  N    L++T
Sbjct: 776 FGIIY--GVSAF-GLSNQTDLTRNESKELIET 804


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA++G K+V AD + 
Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382
           PR +R H   +Q I       ++DP+ LQ I         +R   +  EG + L+ AD +
Sbjct: 621 PRDARIHTTFNQTIAATGRLSSTDPN-LQNIPIRTEEGRRIREAFVVGEGYESLMSADYS 679

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R++A ++ ++  + AF +GED +  T AR F+V P +VT++ RA  K M   L Y
Sbjct: 680 QIEMRIMAHVSEDEGLIDAFNSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAY 738


>gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 1003

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 115/276 (41%), Gaps = 35/276 (12%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS-------- 233
           E  L Y+   +   G  V  AL   L+        +  +   ++  G V++         
Sbjct: 584 ELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQESARAIIGGEVATEDGEEPLNL 643

Query: 234 RCLEKLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +++L+T LF   GL     ++    T  + V     K++P++         A+    +
Sbjct: 644 ASVKQLQTVLFETLGLPHTRKIKSGYSTDAESVTELLSKISPESDGAAFLGALAAYRDNI 703

Query: 290 KLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           KL   VE    A   DGR+  T Q  GA+ TGR S      QN+P   R+ E        
Sbjct: 704 KLAQTVEGLQKAATEDGRVHTTFQ-QGAASTGRLSSTAPNLQNIP--IRTEEG-----RR 755

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +  +    P+P+  +           E + L+ AD + IE R++  +A ++  + A+E G
Sbjct: 756 IRGAFIVAPEPIDGV-----------EYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAG 804

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           EDL+    +  F VAP  VT +QR+  K M   L Y
Sbjct: 805 EDLHRYVGSEVFGVAPEDVTPEQRSKVKAMSYGLAY 840


>gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 314

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 41  RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 99

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 100 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 157

Query: 448 F 448
           F
Sbjct: 158 F 158


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R+  IA  G  +V AD + 
Sbjct: 628 PQTGRVHTHFSQAAVVTGRLASSDPN-LQNIPVRSEEGRKIRTAFIAPAGSSIVSADYSQ 686

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L AF  GED++  T    F V P +V  DQR + K +   L Y  
Sbjct: 687 IELRIMAHLSGDERLLDAFAHGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINFGLIY-- 744

Query: 444 GAKAFQKMASTTGL 457
           G  AF  +A   GL
Sbjct: 745 GMSAF-GLARQLGL 757


>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
 gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
          Length = 610

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 337 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 395

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 396 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 453

Query: 448 F 448
           F
Sbjct: 454 F 454


>gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
 gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
          Length = 837

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 35/260 (13%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSSSRCLEKLKTWLFLETGLHLED 253
           G+ VD   A  +    D  R +LD  L+S+    G   +    ++L   LF + GL    
Sbjct: 455 GFAVD---ADGIRAFGDSLRGELDGILQSIYEEVGYEFNVNSPKQLGEALFDKLGLPPRK 511

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T    +T    L S +  +P   Q+   R  A   +   +  L+ A  +DGR+  T   
Sbjct: 512 KTSRGYSTDAATLESLRPYSPVIDQILKYRTYAKLLSTY-VEGLLSAQAADGRVHSTF-I 569

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              +RTGR S      QN+P           I T L + +              R   +A
Sbjct: 570 QTEARTGRISSTEPNLQNIP-----------IRTELGSRL--------------RGFFVA 604

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             GK+LV AD + IE R+LA + G++   +AF  G D++ +T A+ +++  ++VT   R+
Sbjct: 605 GAGKELVDADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVTPQLRS 664

Query: 431 IGKVMELALGYQGGAKAFQK 450
             K +   + Y  GA +  K
Sbjct: 665 ASKAINFGIMYGKGAFSLSK 684


>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
 gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
          Length = 952

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 133/314 (42%), Gaps = 41/314 (13%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL---- 251
           G  VD +L    ++ + VE  +L +E  +   G   +    ++L   LF E GL +    
Sbjct: 569 GITVDASLLAQESKELGVEVEQLVEEAHA-AAGHPFNLSSPKQLAQILFAEQGLPVVKKT 627

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
              T +T + VLS      P    +  +R R ++     L+ L   ++ DGR+  T    
Sbjct: 628 ASGTPSTDEEVLSELALNYPLPKIILEHR-RLTKLKSTYLDKLPTLIDRDGRIHTTFG-Q 685

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             + TGR S      QN+P                    T  P+  +I     R+   A 
Sbjct: 686 AVAVTGRLSSMDPNLQNIP--------------------TRTPEGRRI-----RTAFTAR 720

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
            G  ++ AD + +E R++A ++ +   L AF  GED++ +T A  F+    QVT DQR +
Sbjct: 721 RGWSVIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPDQRRM 780

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            KV+   L Y  G  AF  +A   GL+    A  V      E +       R+M++   +
Sbjct: 781 AKVINFGLIY--GMSAF-GLAQQMGLDRQVAAAYVD-----EYFHKFPGVKRYMEKTRAQ 832

Query: 492 HAIEDLFIGTACER 505
            A ED ++ TA  R
Sbjct: 833 -AAEDGYVETAFGR 845


>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
 gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
          Length = 930

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +T      + DP+ LQ I         +R   IA EG K++ AD + 
Sbjct: 652 PRTQRVHTSYHQAVTATGRLSSRDPN-LQNIPVRTEEGRRIRQAFIAREGYKVMAADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F V   QVT DQR   K +   L Y  
Sbjct: 711 IELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSAKAINFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 531

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 38/199 (19%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+  +++DGRLR     +GA+ +GR   C  P             L QI          +
Sbjct: 235 LLAMVDTDGRLRTDYAQIGAA-SGRII-CSKP------------NLQQIPAEEEEEGQEE 280

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           P         VR C +A  G +++ ADL+ IE R+LA ++ +Q  L+ F  G+DL+  T 
Sbjct: 281 P---------VRHCFVAPPGYRILKADLSNIELRILAEVSRDQTMLRLFAEGKDLHAETA 331

Query: 414 ARSFNVAPAQVTKDQ-------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
              F+++P   TK         R I K +   L Y  GA     +A+  G++L T   L+
Sbjct: 332 KLMFHLSPETDTKRHLYKGVPGRKIAKTINFGLAYGMGANG---LANRAGVDLPTAKSLI 388

Query: 467 KTNSAPEEWEDAENFCRWM 485
           +T      +E      RW+
Sbjct: 389 RTY-----FETYRGIARWL 402


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 470 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 528

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 529 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 586

Query: 448 F 448
           F
Sbjct: 587 F 587


>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
 gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
 gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
 gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
 gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
          Length = 930

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRHIRQAFIAREGYSIVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
 gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
          Length = 893

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 5/151 (3%)

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD--PLQIISD 362
           R  L + G S+         P    PR  R H   +Q +T      +SDP+   + I SD
Sbjct: 590 RLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSSDPNLQNIPIRSD 649

Query: 363 ---CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R   IA  G  ++ AD + IE RVLA ++G+    +AFE  ED++  T +  F +
Sbjct: 650 EGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFCQAFEHDEDIHTRTASEVFGL 709

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            P  VT + R   K +   + Y  G+ +  +
Sbjct: 710 FPEMVTAEMRRQAKTINFGIIYGQGSFSLAR 740


>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
 gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
          Length = 935

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 662 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 720

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 721 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 778

Query: 448 F 448
           F
Sbjct: 779 F 779


>gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus influenzae 10810]
          Length = 935

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 662 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 720

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 721 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 778

Query: 448 F 448
           F
Sbjct: 779 F 779


>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
 gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
          Length = 933

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 692 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHCRTAAEVFGIAPEN 751

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+  TF
Sbjct: 752 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 790


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
          Length = 930

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SD---CVRSCVIASEGKKLV 377
            P    P   R H    Q +T      +SDP+ LQ I   SD    +R   IA  G K+V
Sbjct: 646 LPQMVSPLTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRSDEGRRIRQAFIAPAGSKIV 704

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  L+AF  G+D++  T A  F +    VT DQR   K +  
Sbjct: 705 AADYSQIELRIMAHLSGDRGLLEAFAAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINF 764

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 765 GLIY--GMSAF 773


>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
 gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
          Length = 930

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
 gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
          Length = 882

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P+  R H   +Q IT      +++P+   I     +   +R   +A E  KLV AD + +
Sbjct: 604 PKTGRIHSSFNQTITTTGRISSTEPNMQNIPVKTEMGRDIRKVFVADENCKLVDADYSQV 663

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA M+G++  + AF+ GED++  T ++ F+V    VT  QR   K +   + Y
Sbjct: 664 ELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKDVTSKQRIEAKAINFGIIY 720


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 35/203 (17%)

Query: 254  LTETTCQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
            L + T +R LS N      QA++ +    +A  +   K+   +++  + GR+   +  +G
Sbjct: 1301 LIQDTSERTLSRNTYHPAIQALREYRKTNKAVTAFTEKIPNHIDS--ATGRIYPNINQIG 1358

Query: 313  ASRTGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            A  +GR+S C  P  Q +PR SR                              R C IA 
Sbjct: 1359 A-ESGRFS-CDNPNLQQIPRDSR-----------------------------FRECFIAD 1387

Query: 372  EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
            +G KLV+AD + IE R+ A +A ++  ++A+ +GEDL+  T +   N   ++VTK++R +
Sbjct: 1388 KGNKLVIADFSQIELRIAADIAEDRRMIEAYNSGEDLHSLTASLVKNKPISEVTKEERQL 1447

Query: 432  GKVMELALGYQGGAKAFQKMAST 454
             K +   L +      F+  A +
Sbjct: 1448 AKAVNFGLIFGMSLAGFRNYAES 1470


>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
 gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
          Length = 930

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 1/129 (0%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R +R + E  QI        +S+P+ +Q I   +R    A EG   V+AD + IE R+ A
Sbjct: 307 RGNRVYPEFKQIGAVTGRMASSNPN-VQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAA 365

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
              GE   ++AF+ G DL+  T +         +TK++R + K +   L Y   AK   +
Sbjct: 366 EYVGEIRMIRAFQEGRDLHRYTASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQ 425

Query: 451 MASTTGLNL 459
            A+T G++L
Sbjct: 426 YAATYGIDL 434


>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
 gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG  +V AD + IE R++A ++ ++  LKAF   ED++  T A  F +AP Q
Sbjct: 681 IREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFANNEDIHRATAAEIFGIAPEQ 740

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           V  +QR   KV+   L Y  G  AF  +AS  G+
Sbjct: 741 VESEQRRYAKVINFGLIY--GMSAF-GLASNLGI 771


>gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
 gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
          Length = 905

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 109/262 (41%), Gaps = 32/262 (12%)

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
           T+   G  VD+   H L    D +     Q+      G   +    ++L+  LF   GL 
Sbjct: 514 TMEQAGIAVDLDALHELEADYDAQVVAAQQDAWDAIGGEQVNLGSPKQLQVVLFETLGLP 573

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT---LVEAMNSDGRLRGT 307
               T+T       +   L+ +A   F + +   R A    +T   L++++  DGR+  T
Sbjct: 574 KTKKTKTGYTTDAEAIADLSEKAPHPFLDALLRHRDASKLRSTVQGLIKSIGDDGRIHTT 633

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
            Q   A+ TGR S      QN+P  + S                            +R  
Sbjct: 634 YQQTIAA-TGRLSSTDPNLQNIPIRTESGRR-------------------------IRRV 667

Query: 368 VIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            +  EG   L+ AD + IE RV+A ++G++  ++AF  GEDL+    +R F V P++VT 
Sbjct: 668 FVVGEGYDCLMSADYSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGSRVFGVEPSEVTS 727

Query: 427 DQRAIGKVMELALGYQGGAKAF 448
           + RA  K M   L Y  G  AF
Sbjct: 728 EMRAKVKAMSYGLAY--GLSAF 747


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
 gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
          Length = 935

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 662 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 720

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 721 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 778

Query: 448 F 448
           F
Sbjct: 779 F 779


>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
 gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
          Length = 867

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q  T      +++P+   I     +   +R   +A EG  L+VAD + I
Sbjct: 591 PHTGRLHTTFNQTATATGRLSSANPNLQNIPVRTAVGREIRRAFVADEGATLLVADYSQI 650

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+LA + GE+  ++ F  GED++  T A+ F V P  VT + R + KV+   + Y
Sbjct: 651 ELRILAHITGEEALVETFRRGEDIHRRTAAQIFGVPPEAVTPEGRRVAKVINFGVLY 707


>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
 gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
          Length = 930

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
          Length = 903

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P +  P   R H    Q +       +SDP+ LQ I         +R   +A  G++LV
Sbjct: 619 LPERIDPDTGRVHTSYHQAVASTGRLSSSDPN-LQNIPIRTEEGRRIRQAFVAPSGRRLV 677

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G+   L+AF  G+D++  T A  F V   QV+ +QR   K +  
Sbjct: 678 AADYSQIELRIMAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINF 737

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 738 GLIY--GMSAF 746


>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
 gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
          Length = 930

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
 gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
          Length = 952

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 711 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 770

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+  TF
Sbjct: 771 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 809


>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
 gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
          Length = 930

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 716 IMAHLSGDQGLISAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +       +SDP+ LQ I         +R   +A +G KL+
Sbjct: 655 LPEQINPRTGRIHTSYHQAVASTGRLSSSDPN-LQNIPVRTAEGRRIRQAFVAPKGYKLL 713

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  + AF    D++  T A  F V   +VT DQR   K +  
Sbjct: 714 AADYSQIELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF 773

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            L Y  GA   QK+    G++  T    + T
Sbjct: 774 GLIYGMGA---QKLGKDIGVDTKTAKAYIDT 801


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +       +SDP+ LQ I         +R   +A +G KL+
Sbjct: 647 LPEQINPRTGRIHTSYHQAVAATGRLSSSDPN-LQNIPVRTAEGRRIRQAFVAPKGYKLL 705

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  + AF    D++  T A  F V   +VT DQR   K +  
Sbjct: 706 AADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINF 765

Query: 438 ALGYQGGAKAFQKMASTTGLNLNT 461
            L Y  GA   QK+    G++  T
Sbjct: 766 GLIYGMGA---QKLGKDIGVDTKT 786


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +       +SDP+ LQ I         +R   +A +G KL+
Sbjct: 651 LPEQINPRTGRIHTSYHQAVASTGRLSSSDPN-LQNIPVRTAEGRRIRQAFVAPKGYKLL 709

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  + AF    D++  T A  F V   +VT DQR   K +  
Sbjct: 710 AADYSQIELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF 769

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            L Y  GA   QK+    G++  T    + T
Sbjct: 770 GLIYGMGA---QKLGKDIGVDTKTAKAYIDT 797


>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 958

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 717 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 776

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+  TF
Sbjct: 777 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 815


>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 932

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +       +S+P+ LQ I         VR    A  G  +V AD + 
Sbjct: 652 PRTGRVHTTYSQAVAITGRLASSNPN-LQNIPIRTAEGRRVRRAFTAPAGSLIVSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSGDKTLMAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGM 770

Query: 444 GAKAFQKMASTTGLNLNTF 462
           G     K      L+   F
Sbjct: 771 GQYGLAKSLGIDNLSAKNF 789


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%)

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
           R +++     N+++E +  D  + G + Q+   S+         P    P+  R H   +
Sbjct: 587 RKTKTGYSTDNSVLEELAIDYEIAGIIIQYRQLSKLQSTYVSALPKMINPQTGRIHSSFN 646

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAG 394
           Q +T      +S+P+   I     I   +R    A + + L++ AD + IE R+LA M+ 
Sbjct: 647 QTVTSTGRLSSSNPNLQNIPVRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSE 706

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF+   D++    A+ FNV   +VT DQR   K +   + Y  G +   K++  
Sbjct: 707 DEVLIEAFKQDLDIHKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQR---KLSRE 763

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHAIEDLF 498
            G++LN    ++    A  ++    NF  + + +   +H  E LF
Sbjct: 764 LGISLNEAKDIIDGYYA--QFPSIRNFINQCVNKARQQHYAETLF 806


>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
 gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
          Length = 960

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  +V AD + IE R++A ++G+   ++AF  G+D++  T A  F V P +
Sbjct: 713 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 772

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT +QR   KV+   L Y  G  AF  +AS  G+ 
Sbjct: 773 VTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 804


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC---- 363
           L F G ++         P    P   R H    Q +       ++DP+   I        
Sbjct: 613 LDFRGMAKLKSTYTDKLPRMINPETGRVHTNYAQAVAVTGRLASNDPNLQNIPVKTEEGR 672

Query: 364 -VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   IA  G  +V AD + IE R++A ++ +   LKAF  G+D++  T +  F++AP 
Sbjct: 673 RIREAFIAPAGCYIVSADYSQIELRIMAHLSDDPGLLKAFREGQDVHKATASEIFDIAPL 732

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +VT +QR   KV+   L Y  G  AF  +AS  G++
Sbjct: 733 EVTPEQRRYAKVINFGLIY--GMSAF-GVASNLGIS 765


>gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock]
          Length = 595

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 184/489 (37%), Gaps = 98/489 (20%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69
           +D    G+  Y++     L  FG  D     PVEL D   + V  ++   AL      +V
Sbjct: 40  VDTETTGLDIYSDTFECRLVQFGTQDEAWVVPVELGDVFIEDV--RIAIGALRK----VV 93

Query: 70  AHNSYFERTVLKACFNLDIPI--HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
             N+ ++  VL  CF +++     R + T +LA+    P   +A G    L        +
Sbjct: 94  LQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVD-PRPFEAGGFGHSL--------E 144

Query: 128 ELIARFCKGETHEC-------LYDRNKPNHREAWRL-------FGEYCKGDVTVTREIFK 173
           ELIA F   E  E        L   +K    + W         + +Y   D   T  + K
Sbjct: 145 ELIAEFISKEQAETVKKLMAKLAQEHKTTKAKIWATIDLFHPEYLKYAGMDTIFTARVCK 204

Query: 174 RLEPLS--------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            L PL         + E E+  +   I+ +G+ +DV  A  L                  
Sbjct: 205 ALTPLVPDVSRGLVAYEHEISEICSYIDRQGFLLDVEYAQEL------------------ 246

Query: 226 TYGLVSSSRCLEKLKTW---LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                 S + L   + W    F E G+   + TE   + +     K+T         R  
Sbjct: 247 ------SDKWLADQQVWEAIAFTEYGVEKVNSTEDLAEGLEEMGVKIT--------GRTE 292

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS--RSHEELD 340
             +  V K  TL+E + ++G    T+    A + G+W           R +  R H  ++
Sbjct: 293 TGKRQVDK--TLLEKLVAEGNELATIA-QEAKKLGKWRKTWVQKFLDTRDAEDRCHTFVN 349

Query: 341 QIITHLP-TSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +       SIT  P      SD  VR C +A EG  +   D    E RVLA ++ +Q  
Sbjct: 350 PLQARTSRMSITGIPAQTLPASDSTVRRCFLAEEGDVMASIDYQTQELRVLAALSNDQTM 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS----T 454
           ++AF+TG DL+  T         AQVT   R +GK+      Y GGAK   + A     T
Sbjct: 410 IEAFKTGADLHQMT------ADAAQVT---RKVGKMANFLTVYGGGAKTLAEQAKVDFPT 460

Query: 455 TGLNLNTFA 463
               L+ FA
Sbjct: 461 AKRTLDAFA 469


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 26/152 (17%)

Query: 291 LNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++TL + +N   GR+  +    G + TGR S      QNLP  S   +E+ + I      
Sbjct: 608 IDTLPKLVNPKTGRIHASFHQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------ 660

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +  DPD                    +V AD + IE R+LA ++G++  +KAFE G D++
Sbjct: 661 VPQDPDWW------------------IVSADYSQIELRILAHLSGDENLVKAFEEGIDVH 702

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             T +R +NV P +V ++ R +GK++  ++ Y
Sbjct: 703 TLTASRIYNVKPEEVNEEMRRVGKMVNFSIIY 734


>gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
 gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
          Length = 944

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  +V AD + IE R++A ++G+   ++AF  G+D++  T A  F V P +
Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 756

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT +QR   KV+   L Y  G  AF  +AS  G+ 
Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 788


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + IE R
Sbjct: 662 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 720

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  ++T +QR   K +   L Y  G  A
Sbjct: 721 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIY--GMSA 778

Query: 448 F 448
           F
Sbjct: 779 F 779


>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
 gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
          Length = 944

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  +V AD + IE R++A ++G+   ++AF  G+D++  T A  F V P +
Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 756

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT +QR   KV+   L Y  G  AF  +AS  G+ 
Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 788


>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
 gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
          Length = 946

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  +V AD + IE R++A ++G+   ++AF  G+D++  T A  F V P +
Sbjct: 699 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 758

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT +QR   KV+   L Y  G  AF  +AS  G+ 
Sbjct: 759 VTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 790


>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
          Length = 929

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 688 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 747

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+  TF
Sbjct: 748 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 786


>gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
 gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
          Length = 879

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 26/148 (17%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L +A++ DGR+R T +    + TGR S      QNLP                   I +D
Sbjct: 596 LEKAIDEDGRIRSTFR-QNIAATGRLSSQDPNLQNLP-------------------IKTD 635

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
              L      +R    A EGK L+ AD + IE R+LA ++G++  + AF+ G D++  T 
Sbjct: 636 EGRL------IRKAFRAEEGKILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTA 689

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ F+    +VTK QR+  K +   + Y
Sbjct: 690 SKVFHTDLDKVTKRQRSEAKAVNFGIIY 717


>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
          Length = 932

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + 
Sbjct: 655 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +Q  + AF  G+D++ +T A  F VA  +VT +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSQDQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
 gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
          Length = 928

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 687 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 746

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+  TF
Sbjct: 747 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 785


>gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100]
          Length = 864

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 133/307 (43%), Gaps = 50/307 (16%)

Query: 169 REIFKRL-EPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKL 218
           R++ K L E L++ +QE  Y D  +            G  VD      L ++ +    K+
Sbjct: 442 RDLVKVLTEKLAAAKQEELYYDLEVPLCLILARMEHEGIAVD---GEHLQELSNDYAAKI 498

Query: 219 DQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
           D+E+ +       S+  L   ++L+  LF +  L     T+T      +  +KLT Q   
Sbjct: 499 DEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTGYSTAAAELEKLTAQTNH 558

Query: 276 VFNNRMRASR---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            F   + A R        ++ L+EA+  DGR+  T    GA+ TGR S      QN+P  
Sbjct: 559 PFLAHLMAHREYQKMKTTIDGLIEAIGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIP-- 615

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                            + +D          +R+   A  G+ L+ AD + IE RV+A +
Sbjct: 616 -----------------VRTDA------GRRIRAAFHAGWGETLLTADYSQIEMRVMAHL 652

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---Q 449
           + ++  ++A+++GEDL+    +R F+V   QVT + R   K +   L Y  G  AF   Q
Sbjct: 653 SQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVKALSYGLVY--GLSAFGLSQ 710

Query: 450 KMASTTG 456
           ++  + G
Sbjct: 711 QLGISAG 717


>gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus parainfluenzae T3T1]
          Length = 932

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + 
Sbjct: 655 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +Q  + AF  G+D++ +T A  F VA  +VT +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSQDQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 7/164 (4%)

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
           R  LQ+   S+         P    P   R H   +Q +T      +SDP+ LQ I    
Sbjct: 589 RLLLQYRSISKLKSTYTDALPKLVAPATGRVHTSYNQAVTSTGRLSSSDPN-LQNIPIRG 647

Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   IA  G  ++ AD + IE RVLA ++G++   +AF  GED++  T +  F 
Sbjct: 648 EEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGEDIHRRTASEVFG 707

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + P  VT + R   KV+   + Y  GA +  K    T      F
Sbjct: 708 MFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAF 751


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I         +R   IA EG ++V AD + 
Sbjct: 655 PVSGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  LKAF  GED++  T A  F +   +VT +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSQDEGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q +T      +S+P+   I     +   +R   +   G KL+ AD   I
Sbjct: 645 PETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQI 704

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+LA ++G++   +AF  G+D++  T AR F V P QVT +QR   K++   + Y
Sbjct: 705 ELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPY 761


>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
 gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
          Length = 927

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G  +V AD + IE R++A ++G+   + AFE GED++  T +  F V   +
Sbjct: 688 IREAFIAPPGSSIVSADYSQIELRIMAHISGDASLMAAFEHGEDVHRATASEIFGVTRQE 747

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           VT +QR I KV+   L Y  G  AF  +AS  G+
Sbjct: 748 VTSEQRRIAKVINFGLIY--GMSAF-GLASNLGI 778


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q +T      +S+P+   I     +   +R   +   G KL+ AD   I
Sbjct: 645 PETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQI 704

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+LA ++G++   +AF  G+D++  T AR F V P QVT +QR   K++   + Y
Sbjct: 705 ELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPY 761


>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
          Length = 687

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 7/121 (5%)

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS------DCVRSCVIASEGKKLVVAD 380
           +++ + S+ H   +Q +T      +SDP+ LQ IS        +R   +A +G KL+ AD
Sbjct: 406 KHIQQDSKIHTCFNQAMTQTGRLSSSDPN-LQNISVRDEQGREIRKAFVAQKGYKLLSAD 464

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA MA E   ++AF+ G D++  T +  F+V+   VT D R + K +   + 
Sbjct: 465 YSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRVAKTVNFGIV 524

Query: 441 Y 441
           Y
Sbjct: 525 Y 525


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q +T      +S+P+   I     +   +R   +   G KL+ AD   I
Sbjct: 645 PETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQI 704

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+LA ++G++   +AF  G+D++  T AR F V P QVT +QR   K++   + Y
Sbjct: 705 ELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPY 761


>gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 880

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 97/211 (45%), Gaps = 34/211 (16%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+T LF E GL      ++      +S K L  +    F  ++ A R +  KL  +VE
Sbjct: 535 KQLQTVLFDELGLPKTKKIKSGYTTDAASLKGLLEKTGHEFLVQLMAHRESS-KLAQMVE 593

Query: 297 AMN----SDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            +      D R+  T  Q + A  TGR S      QN+P   RS E              
Sbjct: 594 TLKKSVADDARIHTTYAQNIAA--TGRISSNNPNLQNIP--VRSEE-------------- 635

Query: 352 SDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       VRS  + SEG + L+ AD + IE R++A ++G+Q  ++A++ GEDL+ 
Sbjct: 636 ---------GRRVRSIFMVSEGYECLLSADYSQIEMRIMAHLSGDQALIQAYKDGEDLHR 686

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
              AR FNV PA+VT   R+  K M   L Y
Sbjct: 687 FVGARIFNVEPAEVTSAMRSKVKAMSYGLAY 717


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +       +SDP+ LQ I         +R   I S G KLV AD + 
Sbjct: 642 PQTGRVHTSYHQAVAATGRLSSSDPN-LQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L AF  G+D++  T A  F VA   VT D R   K +   L Y  
Sbjct: 701 IELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDMRRSAKAINFGLIY-- 758

Query: 444 GAKAF 448
           G  AF
Sbjct: 759 GMSAF 763


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q+ T      +S+P+   I     +   +RSC  A+EG  LV AD + IE R
Sbjct: 736 GRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELR 795

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA M+ +   L AF  G D++  T    ++ AP  VT DQR   K +   L Y  G   
Sbjct: 796 VLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGP-- 853

Query: 448 FQKMASTTGLNLNTFAHLVK 467
            QK+     + +N     ++
Sbjct: 854 -QKLGQELRITVNEAKQFIE 872


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 4/96 (4%)

Query: 364 VRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   IA   + K++ AD + IE R++A MA +   +KAF+ GED++ +T A+ F VA  
Sbjct: 702 IRKAFIARNPEYKIISADYSQIELRLIAQMAQDPVMVKAFQDGEDIHASTAAKIFGVALD 761

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +VT++QR+  K +   + Y  G  AF  +A  TGL+
Sbjct: 762 EVTREQRSQAKTVNFGIIY--GVSAF-GLAQQTGLS 794


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 25/140 (17%)

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  +    G + TGR S      QNLP  S   +E+ + I      +  DP+      
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
                         +V AD + IE R+LA ++G++  LKAFE G D++  T +R FNV P
Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLTASRIFNVKP 714

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT++ R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 10/144 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +       +SDP+ LQ I         +R   IA +G K++
Sbjct: 645 LPEQINPRTGRIHTSYHQAVAATGRLSSSDPN-LQNIPVRTAEGRRIRQAFIAPKGYKML 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  + AF    D++  T A  F V    VT DQR   K +  
Sbjct: 704 AADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNT 461
            L Y  GA   QK+    G++  T
Sbjct: 764 GLIYGMGA---QKLGKDIGVDTKT 784


>gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
 gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
          Length = 602

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 156/391 (39%), Gaps = 70/391 (17%)

Query: 169 REIFKRLEPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           R+    L P+S++     E++L  +   +   G+ +DV     L+      R +LD+ + 
Sbjct: 203 RQKLSPLVPVSARGLVGYERDLAEVCSVMERTGFLLDVDYTRKLST-----RLRLDESVA 257

Query: 224 S---LTYGL--VSSSR----CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           S   L+YG   V+S+      LE++  W+   T    + + +T   ++     +     I
Sbjct: 258 SEIALSYGCENVNSTDQVADVLEQMGAWIPGRTPTGKKQVNDTLLAQLAKDGNEFARSVI 317

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
               +  +A +     ++  ++ ++ DGR   ++  L A RT R S    P Q LP    
Sbjct: 318 ----DAKKAGKWRKTWVDRFLQTVDPDGRCHASINPLQA-RTARMSITEIPAQTLPAGDW 372

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R C +A EG+ +   D    E RVLA ++G
Sbjct: 373 ----------------------------MIRRCFLADEGELIASVDYQAQELRVLAALSG 404

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMA 452
           +   ++AF  G+DL++ T   +F      +TKD  +R   KV+     Y GGAK    ++
Sbjct: 405 DPTMIRAFAEGQDLHLLTARAAFG---DHITKDDPERKYAKVVNFGRVYGGGAKT---VS 458

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             TGL       +V      + ++ A    R +     E A++   I T   RV      
Sbjct: 459 EQTGLGFMAAKQVV------DGFDKAYPGVRVLSHKLQEEAVKSGQIVTPTGRVLPV--- 509

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              R     N L Q+  + +  GKA+I   R
Sbjct: 510 DQDRAYAALNYLIQSTSRDV-TGKALIRLHR 539


>gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
 gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
 gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
 gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
          Length = 929

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLITAFQNGEDVHRRTAAEVFGIAPEN 748

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      ++  TF
Sbjct: 749 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKTF 787


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +       +SDP+ LQ I         +R   I S G KLV AD + 
Sbjct: 639 PQTGRVHTSYHQAVAATGRLSSSDPN-LQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQ 697

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L AF  G+D++  T A  F VA   VT D R   K +   L Y  
Sbjct: 698 IELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDMRRSAKAINFGLIY-- 755

Query: 444 GAKAF 448
           G  AF
Sbjct: 756 GMSAF 760


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLA 382
            P Q  P   R H +  QI          +P+  QI  +   RSC  A +G+KL++AD +
Sbjct: 378 IPAQIHPVTHRLHPKYMQIGAWSGRMSCYNPNIQQIPREADFRSCFTAPDGRKLILADYS 437

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RV A ++G+     A + GEDL+  T +   ++  +QVTK QR   K +   L + 
Sbjct: 438 QIELRVAAQISGDSRMKSACQKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFG 497

Query: 443 GGAKAFQKMASTT 455
            GA+  ++ A  +
Sbjct: 498 MGAEGLKQYAGQS 510


>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002]
 gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002]
          Length = 887

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           LQ+ G ++         P    P   R H    Q +       +SDP+ LQ I       
Sbjct: 587 LQYRGLAKLKSTYTDKLPSLIRPDTGRVHTNYAQAVAITGRLSSSDPN-LQNIPVRTAEG 645

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             VR   IA  G ++V AD + IE R++A ++ +   L AF +GED++ TT A  F V  
Sbjct: 646 RRVREAFIAPPGHRIVSADYSQIELRIMAHLSDDANMLAAFASGEDIHKTTAAEVFGVTR 705

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QVT +QR   K +   L Y  G  AF
Sbjct: 706 EQVTSEQRRAAKAINFGLIY--GMSAF 730


>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6]
 gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
          Length = 951

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H   +Q+        ++DP+ LQ I         +R   +A+ G + + AD + 
Sbjct: 664 PRTGRVHTTYNQVGAATGRLSSNDPN-LQNIPVRTQEGREIRRGFVAAPGHRFIAADYSQ 722

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA++  +   ++AF+ G+D++  T A+ F VA  QV K+QR I K +   + Y  
Sbjct: 723 IELRVLAYITKDPNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIY-- 780

Query: 444 GAKAF 448
           G  AF
Sbjct: 781 GISAF 785


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q+ T      +S+P+   I     +   +RSC  A+EG  LV AD + IE R
Sbjct: 736 GRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELR 795

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA M+ +   L AF  G D++  T    ++ AP  VT DQR   K +   L Y  G   
Sbjct: 796 VLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGP-- 853

Query: 448 FQKMASTTGLNLNTFAHLVK 467
            QK+     + +N     ++
Sbjct: 854 -QKLGQELRITVNEAKQFIE 872


>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
 gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
          Length = 928

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P+  R H    Q +       ++DP+ LQ I         VR   IA  G ++V
Sbjct: 644 LPTLIYPQTGRVHTTYAQAVAITGRLASNDPN-LQNIPVRTAEGRRVREAFIAPAGWQIV 702

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  LKAF +GED++  T A  F V  A VT DQR   K +  
Sbjct: 703 SADYSQIELRIMAHLSDDEGMLKAFASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINF 762

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 763 GLIY--GMSAF 771


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 25/140 (17%)

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  +    G + TGR S      QNLP  S   +E+ + I      +  DP+      
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
                         +V AD + IE R+LA ++G++  LKAFE G D++  T +R FNV P
Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLTASRIFNVKP 714

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT++ R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 931

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 15/209 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q+ T      +S P+   I     +   +R C  A+ G KLV AD + IE RV
Sbjct: 653 RIHTTFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNKLVAADYSQIELRV 712

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ +   +++F   ED++  T    ++V  A VT DQR   K +   L Y  G    
Sbjct: 713 LAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTINFGLIYGMGP--- 769

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
           QK+A    + LN     +      E +    +  +   +N  + A E  F+ T   R ++
Sbjct: 770 QKLAQELKVTLNEAKEFI------ERYFSKLSHLKEFYDNVEQSAREHGFVTTLAGR-RR 822

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKA 537
              + HS  ++L ++  +    T+  G A
Sbjct: 823 LLPEIHSDNNQLRSQARRQAINTVVQGSA 851


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      +SDP+ LQ I         +R   IA +G K+V 
Sbjct: 649 PQMINPATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPQGYKIVA 707

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  L AF  G+D++  T A  F +    VT +QR   K +   
Sbjct: 708 ADYSQIELRIMAHLSGDKGLLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFG 767

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 768 LIY--GMSAF 775


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q  T      +S+P+   I     +   +R+C IA  G+ LV AD + +E R
Sbjct: 643 GRIHTTFNQKATATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELR 702

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           VLA M+ +   L AF  GED++  T A  +++   +V+ DQR   K +   L Y  GA+
Sbjct: 703 VLAHMSQDAALLDAFRQGEDIHARTAALIYDLQAGEVSPDQRRNAKTINFGLIYGMGAQ 761


>gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5]
          Length = 124

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L K G+ +Y E  D  ++LFA+  D+ PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAV 112
            ALE+  V   A N+ FER  L           +    W C+++ + + GLP +L+ V
Sbjct: 61  LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 11/175 (6%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           ++  L + G S+         P Q   +  R H    Q +       ++DP+ LQ I   
Sbjct: 641 IQNVLDYRGLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLSSTDPN-LQNIPIR 699

Query: 361 ---SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 VR   I   E   L+ AD + IE R++A ++ E+  + AF++GED++ +T A+ 
Sbjct: 700 TERGRQVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMIAAFQSGEDIHASTAAKV 759

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           FNVA   VT++QR+  K +   + Y  G  AF  +++ T L+      L+ T  A
Sbjct: 760 FNVALEDVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLSRGEAKELIDTYYA 811


>gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 928

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q IT      +++P+ LQ I         VR   I   G K+V AD + I
Sbjct: 650 RSGRVHTSYHQAITATGRLSSTEPN-LQNIPIRTEQGRRVRQAFIPRPGYKIVAADYSQI 708

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  LKAF  G+D++  T A  FNV+  +VT +QR   K +   L Y  G
Sbjct: 709 ELRIMAHLSQDKGLLKAFSQGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINFGLIY--G 766

Query: 445 AKAF 448
             AF
Sbjct: 767 MSAF 770


>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 933

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA +G K++ AD + 
Sbjct: 656 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQ 714

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +Q  + AF  G+D++ +T A  F +   QVT +QR   K +   L Y  
Sbjct: 715 IELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIY-- 772

Query: 444 GAKAF 448
           G  +F
Sbjct: 773 GMSSF 777


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H    Q         +SDP+    P++  +S  +R+  +A  G +L+ AD + I
Sbjct: 621 PRDGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRAAFVAPPGWRLLSADYSQI 680

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA  + +   L+AF   ED++  T A +F VA  +VT D R I KV+   + Y  G
Sbjct: 681 ELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSDMRRIAKVLNFGIAY--G 738

Query: 445 AKAF 448
             AF
Sbjct: 739 LSAF 742


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 7/164 (4%)

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
           R  LQ+   S+         P    P   R H   +Q +T      +SDP+ LQ I    
Sbjct: 589 RLLLQYRSISKLKSTYTDALPKLVDPATGRVHTSYNQAVTSTGRLSSSDPN-LQNIPIRG 647

Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   IA  G  ++ AD + IE RVLA ++G++   +AF  GED++  T +  F 
Sbjct: 648 EEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGEDIHRRTASEVFG 707

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + P  VT + R   KV+   + Y  GA +  K    T      F
Sbjct: 708 MFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAF 751


>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
 gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
          Length = 911

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG +L+ AD + IE R++A ++ +   LKAF  G+D++  T A  F + P Q
Sbjct: 672 IRRAFIAEEGHQLLAADYSQIELRIMAHLSQDAGLLKAFAEGQDIHRATAAEVFGLDPEQ 731

Query: 424 VTKDQRAIGKVMELALGY 441
           V+ DQR   K +   L Y
Sbjct: 732 VSGDQRRAAKAINFGLIY 749


>gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
 gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
          Length = 858

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 7/114 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIIS------DCVRSCVIASEGKKLVVADLAGIEAR 387
           + H   +Q +T      +S+P+ LQ IS        +R   +A EG  L+ AD + IE R
Sbjct: 584 KIHTSFNQTMTQTGRLSSSEPN-LQNISIRDELGKEIRKAFVAQEGYHLLSADYSQIELR 642

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA MA E   +KAF  G D++  T    FN +P +V + +R I K +   + Y
Sbjct: 643 MLAHMANEDHMIKAFNEGLDIHTKTATLIFNCSPEEVDEHKRRIAKTVNFGIVY 696


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii]
          Length = 888

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P+  R H   +Q IT      +++P+    P+++ I   +R   +A E   LV AD + I
Sbjct: 610 PKTGRIHSSFNQTITTTGRISSTEPNMQNIPVRLEIGRELRKVFVAPEDMYLVDADYSQI 669

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+LA +A ++  + AF  G+D++  T +  FNV   +VTK+ R+  K +   + Y
Sbjct: 670 ELRILAHIANDEGLIDAFSKGDDIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVY 726


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P+  R H + +Q +T      +S+P+   I      S  +R   I  E   LV AD + I
Sbjct: 678 PKTDRIHTDFNQTLTSTGRLSSSNPNLQNIPVRTEFSQRIRRAFIPKENWVLVAADYSQI 737

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQG 443
           E R+L  ++ E   L+A++ GED++  T    F+  +P  VT  +R IGK++   + Y  
Sbjct: 738 ELRILTHLSQEPILLQAYQAGEDVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGM 797

Query: 444 GAKAFQKMASTT 455
           GA+ F + A  +
Sbjct: 798 GAQRFAREAGVS 809


>gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
          Length = 914

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +T      +SDP+ LQ I         +R   +A+ G KL+
Sbjct: 630 LPQQINPRTGRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTAEGRRIRQAFVAAPGYKLL 688

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A +A +   L AF+   D++  T A  F V   QV+ DQR   K +  
Sbjct: 689 AADYSQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINF 748

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 749 GLIY--GMSAF 757


>gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
 gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
          Length = 955

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 39/276 (14%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS----RCLE 237
           E  L Y+   +   G  V  AL + LN       +  +++ + L  G V+        ++
Sbjct: 540 ELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVK 599

Query: 238 KLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQ--------AIQVFNNRMRASR 285
           +L+T LF   GL     ++    T  + V     K++P+        A+Q + + ++  +
Sbjct: 600 QLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQ 659

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           +    +  L +A  +DGR+  T Q   AS TGR S      QN+P  +     +      
Sbjct: 660 T----VEGLQKAAVADGRVHTTFQQNAAS-TGRLSSTAPNLQNIPIRTDEGRRIRGAFIV 714

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            P            I D V       E + L+ AD + IE R++  +A ++  ++A+  G
Sbjct: 715 APK-----------ILDGV-------EYEGLLTADYSQIEMRIMVHLAADEKLIQAYADG 756

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           EDL+    +  F VAP +VT   RA  K M   L Y
Sbjct: 757 EDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAY 792


>gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 933

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA +G K++ AD + 
Sbjct: 656 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQ 714

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +Q  + AF  G+D++ +T A  F +   QVT +QR   K +   L Y  
Sbjct: 715 IELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIY-- 772

Query: 444 GAKAF 448
           G  +F
Sbjct: 773 GMSSF 777


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 9/122 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +       +SDP+ LQ I         +R+  IA  G  LV AD + IE 
Sbjct: 647 GRVHTSYAQAVAVTGRLASSDPN-LQNIPVRTAEGRRIRAAFIAPPGSSLVSADYSQIEL 705

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++ +   L+AF  GED++  T A  F V P  V  DQR + KV+   L Y  G  
Sbjct: 706 RIMAHLSEDARLLEAFAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIY--GMS 763

Query: 447 AF 448
           AF
Sbjct: 764 AF 765


>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
 gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
          Length = 929

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 10/141 (7%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +       +SDP+ LQ I         +R   IA  G KL+
Sbjct: 645 LPEQINPRTGRIHTSYHQAVASTGRLSSSDPN-LQNIPVRTAEGRRIRQAFIAPPGYKLL 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  L AF    D++  T A  F V    VT DQR   K +  
Sbjct: 704 AADYSQIELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLN 458
            L Y  GA   QK+    G++
Sbjct: 764 GLIYGMGA---QKLGKDIGVD 781


>gi|313631120|gb|EFR98660.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 80

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           PD   ++S  +R+  IA +G    + D + IEARV+AW+AGEQW+L  F +   +Y  + 
Sbjct: 7   PD---VLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASA 63

Query: 414 ARSFNVAPAQVTKDQR 429
           ++ F++   +V K+ R
Sbjct: 64  SQMFHIPIEEVDKNLR 79


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA     +V AD + IE R++A ++G+   L+AF  GED++  T A  F VAP++
Sbjct: 679 IRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLLEAFAEGEDVHRATAAEVFGVAPSE 738

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQK 450
           V+ +QR   KV+   L Y   A    K
Sbjct: 739 VSSEQRRYAKVINFGLIYGMSAHGLAK 765


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEG-KKLVVADLAGIEA 386
            R H   +QI+       +  P+    P++ +    +R   +   G + L+ AD + IE 
Sbjct: 624 GRIHTTFNQIVAATGRLSSEKPNLQNIPIRTVEGRRIRQGFVVGPGYETLLTADYSQIEL 683

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A ++G++  + AFE+G D + TT AR F++ P QVT + RA  K M   L Y
Sbjct: 684 RIMAHLSGDESLIAAFESGHDFHKTTAARVFDIEPEQVTGEMRAKIKAMNYGLAY 738


>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
 gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
          Length = 908

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L+TL   + +DGR+  T     A+ TGR S      QN+P                   +
Sbjct: 622 LDTLPTLVAADGRIHTTYH-QAATATGRLSSTDPNLQNIP-------------------V 661

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            +D      +   +R   +A+EG +LV AD + +E R+LA +A +   ++AF   ED++ 
Sbjct: 662 RTD------LGREIRRAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHT 715

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T A  F VA  QV ++QR + K++   + Y
Sbjct: 716 RTAAEVFGVAKEQVDREQRRVAKMVNFGIAY 746


>gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2]
          Length = 935

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q IT      ++DP+ LQ I         VR   +  EG K+V AD + I
Sbjct: 657 RTGRVHTSYHQAITATGRLSSTDPN-LQNIPIRNEEGRKVRQAFVPREGYKIVAADYSQI 715

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  L AF  G D++  T A  F V   +VT +QR   K +   L Y  G
Sbjct: 716 ELRIMAHLSGDEGLLDAFAHGRDIHKATAAEVFGVTLDEVTTEQRRSAKAINFGLIY--G 773

Query: 445 AKAF 448
             AF
Sbjct: 774 MSAF 777


>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
 gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
          Length = 937

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    PR +R H    Q +       +++P+ LQ I         VR    A +G  +V
Sbjct: 645 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 9/122 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      +SDP+ LQ I         +R   IA+ G +L+ AD + IE 
Sbjct: 636 GRVHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRRIRRAFIAASGHRLLAADYSQIEL 694

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G++  L AF  G+D++  T A    +AP  VT +QR   K +   L Y  G  
Sbjct: 695 RIMAHLSGDERLLAAFAGGQDIHRATAAEILGLAPEDVTGEQRRSAKAINFGLIY--GMS 752

Query: 447 AF 448
           AF
Sbjct: 753 AF 754


>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
 gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
          Length = 901

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD--PLQIISD---CVRSCVIASEGKKLVVADLAGI 384
           P   R H    Q +T      +SDP+   + I SD    +R   IA EG  ++ AD + I
Sbjct: 623 PDSKRVHTSYHQAVTSTGRLSSSDPNLQNIPIRSDEGRRIRQAFIAEEGYSILAADYSQI 682

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++   +AF+  +D++  T A  F+VAP  V ++QR   K +   L Y  G
Sbjct: 683 ELRIMAHLSQDERLQRAFQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIY--G 740

Query: 445 AKAF 448
             AF
Sbjct: 741 MSAF 744


>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
 gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
          Length = 929

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +       +SDP+ LQ I         +R   I   G ++V AD + I
Sbjct: 652 KTGRVHTSYAQAVAVTGRLASSDPN-LQNIPIRTPEGRRIREAFITPAGSRIVSADYSQI 710

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  LKAF  GED++  T A  F+VA   V+ +QR   KV+   L Y  G
Sbjct: 711 ELRIMAHLSGDEGLLKAFAAGEDIHRATAAEVFSVALDAVSSEQRRYAKVINFGLIY--G 768

Query: 445 AKAFQKMASTTGLNLNTFA 463
             A+   A    LN+ T A
Sbjct: 769 MSAYGLAAQ---LNIETSA 784


>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92]
 gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
          Length = 922

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   IA EG K+V AD + 
Sbjct: 644 PGTGRIHTSYHQAVTATGRLSSTDPN-LQNIPVRTQEGRRIRHAFIAPEGYKVVAADYSQ 702

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +Q  L AF  G D++  T A  F V   QV+ DQR   K +   L Y  
Sbjct: 703 IELRIMAHLSQDQGLLDAFSKGADIHRATAAEVFKVELDQVSDDQRRSAKAINFGLIY-- 760

Query: 444 GAKAF 448
           G  AF
Sbjct: 761 GMSAF 765


>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 930

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA +G  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARKGYSIVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  G  A
Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
 gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
          Length = 931

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +T      +SDP+ LQ I         +R   +A+ G KL+
Sbjct: 647 LPQQINPRTGRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTAEGRRIRQAFVAAPGYKLL 705

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A +A +   L AF+   D++  T A  F V   QV+ DQR   K +  
Sbjct: 706 AADYSQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINF 765

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 766 GLIY--GMSAF 774


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I         +R   +A  G K+V AD + 
Sbjct: 631 PSTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRTEEGRRIRQAFVADHGYKIVAADYSQ 689

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L+AF  G+D++  T A   N+ P  VT +QR   K +   L Y  
Sbjct: 690 IELRIMAHLSEDDGLLQAFAHGQDIHRATAAEIMNITPEAVTSEQRRNAKAINFGLIY-- 747

Query: 444 GAKAF 448
           G  AF
Sbjct: 748 GMSAF 752


>gi|332701547|ref|ZP_08421635.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
 gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
          Length = 882

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 152/417 (36%), Gaps = 118/417 (28%)

Query: 234 RCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           R  ++L   LF   GL  +  T    ++T   VL   +   P    +   RM     +  
Sbjct: 536 RSNQQLAQLLFDRLGLKAKGKTPGGAQSTANPVLEKLRNEHPVVADILEFRMLEKLRSTY 595

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            L  L +  +  GR+  T   L A+ TGR S      QN+P                   
Sbjct: 596 -LEPLPKLADEQGRIHTTFNQL-ATATGRLSSSAPNLQNIP------------------- 634

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
               P   ++     R+C  A  G  L  AD + IE RVLA M+ +   L+AF  G+D++
Sbjct: 635 -IRGPQGTRM-----RACFTAGPGCLLAAADYSQIELRVLAHMSQDPTLLEAFRHGQDIH 688

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T    F+    QV  D+R   K +   L Y  G    QK+A+  G+ L          
Sbjct: 689 ARTAGLIFDKDAGQVAPDERRSAKTINFGLLYGMGP---QKLAAELGIAL---------- 735

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                   A+ F            IE  F+G              S++ E ++ + +  E
Sbjct: 736 ------AQAKEF------------IERYFVGL-------------SKLKEFYDSIVKEAE 764

Query: 530 QTIENGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           Q   NG  + +  +RR +P ++ + D  NL       ++   R   N R           
Sbjct: 765 Q---NGSVVTMLGRRRLLPDIHSRND--NL-------KAQAVRQAINTR----------- 801

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
                        +Q  + DI+   M+ A         G  ++L VHDE++ ETP+ 
Sbjct: 802 -------------IQGSAADIIKLAMIRAHADEKIRALGGRLILQVHDELLLETPEA 845


>gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
 gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
          Length = 908

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   I +EG + L+  D + IE R++A ++G++  ++AF++GEDL+ T  AR FNV P 
Sbjct: 667 IRQGFIVTEGFETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFNVEPG 726

Query: 423 QVTKDQRAIGKVMELALGY 441
            V  +QR   K M   L Y
Sbjct: 727 SVDAEQRRRIKAMSYGLAY 745


>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
 gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
          Length = 930

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 748

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+   F
Sbjct: 749 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 787


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 25/140 (17%)

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  +    G + TGR S      QNLP  S   +E+ + I      +  DP+      
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
                         +V AD + IE R+LA ++G++  L+AFE G D++  T +R FNV P
Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT++ R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
 gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
          Length = 879

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 126/288 (43%), Gaps = 55/288 (19%)

Query: 188 LDQTINDRG-----YCVDVALAHTLNQI----VDVERTKLDQ---ELESLTYGLVSSSRC 235
           ++Q + D G     + ++V L H L ++    + V++  L++   + E+     V+++R 
Sbjct: 462 MNQELTDAGQAELYFSMEVPLTHILAEMEARGIAVDKAALEELAADYEAQIADEVTAARE 521

Query: 236 L-----------EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           L           ++L+  LF + GL     T+T      +  +KL  Q    F N + A 
Sbjct: 522 LAEDDQLNLSSPKQLQKVLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAH 581

Query: 285 R---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           R        ++ L+ A++ DGR+R T    GA+ TGR S      QN+P  + +  +   
Sbjct: 582 REYQKMKSTIDGLINAIDGDGRIRTTFNQKGAA-TGRLSSSEPNLQNIPVRTEAGRK--- 637

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +RS     EG + L+ AD + IE RV+A ++ +   ++
Sbjct: 638 ----------------------IRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIE 675

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A+  GEDL+    +R F+V   +VT + R   K +   L Y  G  AF
Sbjct: 676 AYRAGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVY--GLSAF 721


>gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
 gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
          Length = 901

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 29/150 (19%)

Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           L++A+  DGR+  TL Q + A  TGR S      QN+P   R+ E               
Sbjct: 616 LIKAVADDGRIHTTLHQTITA--TGRLSSVDPNLQNIP--VRTDE--------------- 656

Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R   +  EG  +L+ AD + IE R++A ++ ++  ++AF +G D +  
Sbjct: 657 --------GRRIREAFVVGEGYAELMTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAA 708

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           T AR F+V P +VT +QRA  K M   L Y
Sbjct: 709 TAARVFDVDPTEVTGEQRAKIKAMNYGLAY 738


>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
 gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
          Length = 881

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII---SDC---VRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I   S+    +R   IA +G +++ AD + 
Sbjct: 580 PHTGRIHTSYHQAVTSTGRLSSSDPN-LQNIPVRSEAGRRIRRAFIAEDGWQILAADYSQ 638

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L AF  G+D++  T A  F VAP  V+++QR   K +   L Y  
Sbjct: 639 IELRIMAHLSADPGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIY-- 696

Query: 444 GAKAF 448
           G  AF
Sbjct: 697 GMSAF 701


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +T      ++DP+ LQ I         VR   +  EG K V AD + I
Sbjct: 652 RTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRVRQAFVPREGNKFVAADYSQI 710

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  L AF  G+D++  T A  F V   +VT +QR   K +   L Y  G
Sbjct: 711 ELRIMAHLSGDKGLLDAFAHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIY--G 768

Query: 445 AKAF 448
             AF
Sbjct: 769 MSAF 772


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 7/114 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA +G K+V AD + IE R
Sbjct: 689 RVHTSYHQAVTTTGRLSSSDPN-LQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELR 747

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++A +A ++  + AF  G+D++  T A  F ++ A+VT +QR   K +   L Y
Sbjct: 748 IMAHLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLIY 801


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R   IA +G K+V AD + I
Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 24/170 (14%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q  T      +S+P+   I     +   +R   IA  G  L+  D + I
Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQI 684

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           + RVLA ++ +   ++AF++ +D++  T AR  NV+P++VTK+QR + K +   + Y   
Sbjct: 685 DLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNVSPSKVTKEQRRLAKTVNFGVIYG-- 742

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                   S+ GL   T   L          E+A+ F +   E +P  A+
Sbjct: 743 -------MSSYGLEQATELSL----------EEADKFIKAYFEKYPRVAV 775


>gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567]
 gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567]
          Length = 955

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 39/276 (14%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS----RCLE 237
           E  L Y+   +   G  V  AL + LN       +  +++ + L  G V+        ++
Sbjct: 540 ELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVK 599

Query: 238 KLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQ--------AIQVFNNRMRASR 285
           +L+T LF   GL     ++    T  + V     K++P+        A+Q + + ++  +
Sbjct: 600 QLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQ 659

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           +    +  L +A  +DGR+  T Q   AS TGR S      QN+P  +     +      
Sbjct: 660 T----VEGLQKAAVTDGRVHTTFQQNAAS-TGRLSSTAPNLQNIPIRTDEGRRIRGAFIV 714

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            P            + D V       E + L+ AD + IE R++  +A ++  ++A+  G
Sbjct: 715 APK-----------VLDGV-------EYEGLLTADYSQIEMRIMVHLAADEKLIQAYADG 756

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           EDL+    +  F VAP +VT   RA  K M   L Y
Sbjct: 757 EDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAY 792


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 25/140 (17%)

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  +    G + TGR S      QNLP  S   +E+ + I      +  DP+      
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
                         +V AD + IE R+LA ++G++  L+AFE G D++  T +R FNV P
Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT++ R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
 gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
          Length = 904

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q I       +SDP+    P++ +    VR   IA +G K++ AD + IE R+
Sbjct: 629 RVHTSYNQAIAITGRLASSDPNLQNIPIRTVEGRKVREAFIAPDGSKILSADYSQIELRI 688

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  + AF+  ED++  T    FN+  + V+ +QR   KV+   L Y  G    
Sbjct: 689 MAHLSKDKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKVINFGLIYGMGVYGL 748

Query: 449 QK 450
            K
Sbjct: 749 AK 750


>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
 gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
 gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
          Length = 942

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 42/222 (18%)

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G+   +  L KLK+  +  T   LE+L++            L P A  +   R + ++  
Sbjct: 600 GIDPRAHGLSKLKSGGYSITAEVLEELSQ------------LYPIAADILTYR-QLTKLK 646

Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++ L + +N   GR+  +   LGA+ TGR S      QN+P  +    E        
Sbjct: 647 STYIDALPDLVNPRTGRIHTSYNQLGAA-TGRLSSNNPNLQNIPVRTEEGRE-------- 697

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                            +R   +A  G + V AD + IE RVLA M+G++  + AF+ G 
Sbjct: 698 -----------------IRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGL 740

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           D++  T +R F V P  V K+QR + K +   + Y  G  AF
Sbjct: 741 DIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIY--GISAF 780


>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
 gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
          Length = 939

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q         +S+P+ LQ I         +R+  IA     +V AD + 
Sbjct: 661 PRTGRVHTSFSQATAVTGRLSSSEPN-LQNIPIRTPEGRRIRAAFIAPRDHLIVSADYSQ 719

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L+AF  GED++  T    F VAPA+VT +QR   KV+   L Y  
Sbjct: 720 IELRIMAHLSDDARLLEAFARGEDVHRATAGEVFGVAPAEVTSEQRRYAKVINFGLIYGM 779

Query: 444 GAKAFQK 450
            A    K
Sbjct: 780 SAHGLAK 786


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 25/140 (17%)

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  +    G + TGR S      QNLP  S   +E+ + I      +  DP+      
Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
                         +V AD + IE R+LA ++G++  L+AFE G D++  T +R FNV P
Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT++ R  GK++  ++ Y
Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734


>gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5]
 gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase
 gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5]
          Length = 595

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 187/487 (38%), Gaps = 109/487 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69
           +D    G+  Y++     L  FG  D     PVEL D   + V  ++   AL+     +V
Sbjct: 40  VDTETTGLDIYSDTFECRLVQFGTQDEAWVVPVELGDVFIEDV--RIAIGALKR----MV 93

Query: 70  AHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
             N+ F+  VL  CF +++     R + T +LA+    P   +A G    L        +
Sbjct: 94  LQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVD-PRPFEAGGFGHSL--------E 144

Query: 128 ELIARFCKGETHEC-------LYDRNKPNHREAWR---LFGE----YCKGDVTVTREIFK 173
           ELIA+F   +  E        L   +K    + W    LF      Y   D   T  + K
Sbjct: 145 ELIAKFISEDQAENVKKLMAKLAAEHKTTKAKIWSTIDLFHPEYLLYAGMDTIFTARVCK 204

Query: 174 RLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-ES 224
            L PL           E ++  +   I+ +G+ +DV  + +L      E+   DQE+ E+
Sbjct: 205 SLTPLVPDVSRSLVPYEHKISEICSYIDRQGFLLDVEYSRSL-----AEKWLADQEVWEA 259

Query: 225 LT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +    YG V      E L   L  E G+ +   TET  ++V   N  L  + ++   N +
Sbjct: 260 IAFTEYG-VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQV---NAALLDKLVED-GNEL 313

Query: 282 RASRSAVLKLNT--------LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            A      KL           ++  +S+ R    +  L A RT R S    P Q LP   
Sbjct: 314 AAIAQEAKKLGKWRKTWVQKFIDTRDSEDRCHTFINPLQA-RTSRMSITGIPAQTLPS-- 370

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                      SD  VR C IA  G  +   D    E RVLA +
Sbjct: 371 ---------------------------SDWIVRRCFIAEPGDVMASVDYQAQELRVLAAL 403

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  ++AFE G DL+  T         A   +  R +GK       Y GGAKA   +A
Sbjct: 404 SGDRNMIEAFENGADLHQMT---------ADAAQVPRKVGKTANFQKVYGGGAKA---LA 451

Query: 453 STTGLNL 459
              G+++
Sbjct: 452 EAVGISI 458


>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
 gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
          Length = 938

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  
Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K  S   ++   F
Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLSIDNISAKNF 788


>gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
 gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A+ GK LV AD + IE R+LA MAG+Q  ++ F +G D++  T ++ F V P Q
Sbjct: 661 LREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIEGFHSGADIHTITASQVFGVTPDQ 720

Query: 424 VTKDQRAIGKVMELALGY 441
           VT   R   K +   + Y
Sbjct: 721 VTPQMRRSAKAVNFGIVY 738


>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
 gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
          Length = 933

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I         +R   IA EG ++V AD + 
Sbjct: 654 PFSGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQ 712

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  LKAF  G+D++  T A  F V   +VT +QR   K +   L Y  
Sbjct: 713 IELRIMAHLSQDEGLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIY-- 770

Query: 444 GAKAF 448
           G  AF
Sbjct: 771 GMSAF 775


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLA 382
           F P   P   R H    QI          +P+  QI  D   R+C  A  G+KL++AD +
Sbjct: 303 FTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNIQQIPRDSEFRACFAAPPGRKLILADYS 362

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RV A ++G+   + A++ GEDL++ T +   +   A++T  +R   K +   L + 
Sbjct: 363 QIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNFGLIFG 422

Query: 443 GGAKAFQKMA 452
            GA   Q+ A
Sbjct: 423 MGAPGLQQYA 432


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q         +++P+ LQ I         +R   IA  G  +V AD + 
Sbjct: 661 PRTGRVHTSYGQATAVTGRLASTEPN-LQNIPVRTDEGRRIREAFIAEPGSVIVSADYSQ 719

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L+AF  GED++  T A  F V    V+ +QR   KV+   L Y  
Sbjct: 720 IELRIMAHISGDENLLRAFANGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIY-- 777

Query: 444 GAKAFQKMASTTGLNLNTFAHLV 466
           G  AF  +AS  G+  +   H +
Sbjct: 778 GMSAF-GLASNLGIERDAARHYI 799


>gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 878

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 43/255 (16%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFL------E 246
           G+  D  +   L + +D +  +L QE+  L+   + + S+ +  E L   L L      +
Sbjct: 496 GFVTDRKVLEELKEGIDADIDELTQEIYELSGSEFNINSTKQLGEVLFKDLELPVIKKTK 555

Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           TG      T+ +    L    ++ P+ I+ +    +  RS  ++   L +A++ DGR+R 
Sbjct: 556 TGFS----TDASVLEKLRDKHQIIPK-IERYRELFKL-RSTYIE--GLEKAIDYDGRIRS 607

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T +    + TGR S      QNLP                   I +D   L      +R 
Sbjct: 608 TFR-QNIAATGRLSSQDPNLQNLP-------------------IKTDEGRL------IRK 641

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
              A EGK L+ AD + IE R+LA ++G++  + AF   +D++  T ++ F+    +VTK
Sbjct: 642 AFKAEEGKILIDADYSQIELRILASLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTK 701

Query: 427 DQRAIGKVMELALGY 441
            QR+  K +   + Y
Sbjct: 702 RQRSEAKAVNFGIIY 716


>gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
          Length = 930

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII---SD---CVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I   SD    +R   IA  G ++V AD + 
Sbjct: 652 PLTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L+AF  G+D++  T A  F +    V+ DQR   K +   L Y  
Sbjct: 711 IELRIMAHLSGDKGLLQAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
 gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
          Length = 916

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +SDP+   I     +   V++   A EG   +  D + IE R
Sbjct: 641 GRVHTTYNQTITATGRLSSSDPNLQNIPTRSELGRTVKTAFSAGEGSVFLAVDYSQIELR 700

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++G++  ++AF  GED +  T AR F V  ++VT D R+  K +   + Y  G +A
Sbjct: 701 LLAHLSGDEHLVRAFNEGEDFHAETAARVFGVPVSEVTPDLRSRAKAVNFGIVY--GQQA 758

Query: 448 F 448
           +
Sbjct: 759 Y 759


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R   IA +G K+V AD + I
Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796


>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
 gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2]
 gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
 gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
 gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
          Length = 930

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    PR +R H    Q +       +++P+ LQ I         VR    A  G  +V
Sbjct: 645 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF++GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
 gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
          Length = 930

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    PR +R H    Q +       +++P+ LQ I         VR    A  G  +V
Sbjct: 645 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF++GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 10/144 (6%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382
           LPR  R H    Q +       ++DP+ LQ I         VR   IA+ G  +  AD +
Sbjct: 668 LPRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFIAAPGHVIASADYS 726

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G++  L+AF  G D++  T +  FNV   QV+ +QR   KV+   L Y 
Sbjct: 727 QIELRIMAHLSGDESLLRAFHEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIY- 785

Query: 443 GGAKAFQKMASTTGLNLNTFAHLV 466
            G  +F  +A   G+     A  +
Sbjct: 786 -GMSSF-GLAKNLGIETKAAAAYI 807


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII---SD---CVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      +SDP+ LQ I   SD    +R   IA  G ++V 
Sbjct: 647 PQMVNPLTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRSDEGRRIRQAFIAPAGSRIVA 705

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  L AF  G+D++  T A  F +    V+ DQR   K +   
Sbjct: 706 ADYSQIELRIMAHLSGDKGLLAAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFG 765

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 766 LIY--GMSAF 773


>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
 gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
          Length = 946

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L F G ++         P    P+  R H    Q         ++DP+ LQ I       
Sbjct: 638 LDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEG 696

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G  +V AD + IE R++A ++ ++  L+AF  G+D++  T A  F V P
Sbjct: 697 RRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFREGQDVHRATAAEVFGVTP 756

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +VT +QR   KV+   L Y  G  AF  +AS  G+ 
Sbjct: 757 LEVTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 790


>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
 gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
          Length = 938

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 136/356 (38%), Gaps = 92/356 (25%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV 378
            P Q  PR  R H   +Q  +      +SDP+   I     +   VR+  IA EG  L+ 
Sbjct: 650 LPQQVNPRTGRVHTRFNQTGSVTGRLASSDPNLQNIPTRTDLGRQVRNAFIADEGWVLLS 709

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
            D + IE R++A +A ++  L AF  G+D++  T A  + V    VT++ R   K +   
Sbjct: 710 VDYSQIELRIVAHVANDEAMLAAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFG 769

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y  G  AF       GL          + SA     +AENF +   E  P        
Sbjct: 770 LIY--GMSAF-------GL----------SRSADLTLAEAENFVKAYFEQFP-------- 802

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +R     R++ +R            E  +E    ++ R+R      Y    KN  
Sbjct: 803 ---GVKRFLDDLRRRAAR------------EGYVET---LLGRRR------YFPNLKN-- 836

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM---- 614
               P+  +L  R+    R  +N                    +Q  + DI+   M    
Sbjct: 837 ----PANPALKARE---EREAINAP------------------IQGTAADIIKLAMIRLP 871

Query: 615 --MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
             + A  +   ++L VHDE+V E P  +    A ++ H+M +  ++   +PL  E 
Sbjct: 872 EALRAAGSRARLLLQVHDELVLEVPREEMPGTAKLVQHVMET--AYPLQIPLTTEA 925


>gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
 gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
          Length = 1003

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 35/276 (12%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTL--------NQIVDVERTKLDQELESLTYGLVSSS 233
           E  L Y+   +   G  V  AL   L        NQ  D  RT +   +++       + 
Sbjct: 584 ELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQDAARTIIGDTVQTDDGEEPLNL 643

Query: 234 RCLEKLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +++L+T LF +  L     ++    T  + V     K++P++         A+    +
Sbjct: 644 ASVKQLQTVLFDKLALPHTRKIKSGYSTDAESVTELLAKISPESDGAAFLGALAAYRDNI 703

Query: 290 KLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           KL   VE +      DGR+  T Q  GA+ TGR S      QN+P  +     +      
Sbjct: 704 KLVQTVEGLQKAAADDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRTEEGRRIRGAFIV 762

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            P  +           D V       E + L+ AD + IE R++  +A ++  + A+E G
Sbjct: 763 APAPV-----------DGV-------EYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAG 804

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           EDL+    +  F VAP +VT +QR+  K M   L Y
Sbjct: 805 EDLHRYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAY 840


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R   IA +G K+V AD + I
Sbjct: 643 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 701

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 702 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 758


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R   IA +G K+V AD + I
Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796


>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02]
 gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
 gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
 gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19]
 gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11]
 gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18]
 gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1]
 gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
 gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332]
 gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679]
 gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035]
 gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 908

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    PR +R H    Q +       +++P+ LQ I         VR    A  G  +V
Sbjct: 623 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 681

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF++GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 682 SADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 741

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 742 GLIYGMGQYGLAKSLGIDNLSAKNF 766


>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
 gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
          Length = 898

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +       +SDP+ LQ I         +R   IA +G +L+  D + 
Sbjct: 620 PRTGRVHTSYRQAVAATGRLSSSDPN-LQNIPVRSPEGRRIRRGFIARQGYRLLAVDYSQ 678

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E R++A  +G++   +AF  GED++  T A  F  A  QVT +QR   K +   L Y  
Sbjct: 679 VELRIMAHFSGDERLHRAFAAGEDIHRATAAEVFATALEQVTAEQRRAAKAINFGLIY-- 736

Query: 444 GAKAFQKMASTTGLNLNTFAHLVK 467
           G  A+  +A   G+  +   H V+
Sbjct: 737 GMSAY-GLARQLGIERDAAQHYVE 759


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EGKK++ AD + IE R++A ++ ++  L AF  G+D++  T A  F+V  ++
Sbjct: 678 IRHAFIAPEGKKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSE 737

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT DQR   K +   L Y  G  AF
Sbjct: 738 VTTDQRRRAKAVNFGLIY--GMSAF 760


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R   IA +G K+V AD + I
Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796


>gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
 gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
          Length = 888

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 18/218 (8%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R SR H  L+ + T      +S+P+ LQ I         +R+C  A  G +LV AD + I
Sbjct: 611 RDSRIHTTLNNMATATGRLSSSNPN-LQNIPIRGEFGRRMRACFTAGPGNRLVAADYSQI 669

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++GE   L AF  G D++  T A  F+     +  D+R   K +   L Y  G
Sbjct: 670 ELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEAIAPDERRQAKTINFGLLYGMG 729

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
               QK++   G+ L+     +        +E       +  E   E A  D F+ T   
Sbjct: 730 P---QKLSRDLGIKLDAAKAFIA-----RYFERLPGLSAFY-EGIVEAAKRDGFVTTLAG 780

Query: 505 RVKKAWRQKHSRVSELWNEL-HQAFEQTIENGKAIIAR 541
           R ++      S  S+L ++   QA    ++ G A I +
Sbjct: 781 R-RRLLPDIGSANSQLSSQARRQAINTVVQGGAADIIK 817


>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
 gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
          Length = 941

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IAS G  +V AD + IE R++A ++G++  L+AF  GED++  T +  F V    
Sbjct: 702 IREAFIASPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATASEIFGVDREA 761

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           V+ +QR   KV+   L Y  G  AF  +AS  G+      H +
Sbjct: 762 VSSEQRRYAKVINFGLIY--GMSAF-GLASNLGIEREAAKHYI 801


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 30/178 (16%)

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P AI    N  +   + V KL+TL+    +DGR+  +      + TGR S      QN+P
Sbjct: 610 PAAIIAQRNLSKLKSTYVDKLSTLINP--ADGRIHTSFN-QTVTATGRLSSSNPNLQNIP 666

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              R+ E                          +R   IA+ G + + AD + I+ RVLA
Sbjct: 667 --VRTQE-----------------------GRRIRGAFIAAPGHRFLAADYSQIDLRVLA 701

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
             + +   L+AF+  +D++  T A  F V PA VT D R + K +   + Y  G  AF
Sbjct: 702 HYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVAKTINFGIIY--GMSAF 757


>gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173]
          Length = 169

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 1/107 (0%)

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           DP+ LQ I   +R    A EG   V+AD + IE R+ A   GE   +KAF+ G DL+  T
Sbjct: 1   DPN-LQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYT 59

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +         +TK++R + K +   L Y   AK   + A+T G++L
Sbjct: 60  ASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDL 106


>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
          Length = 959

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         ++DP+ LQ I         +R   +A  G  +V AD + 
Sbjct: 673 PQTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQ 731

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L+AF  G+D++  T A  F V P +VT +QR   KV+   L Y  
Sbjct: 732 IELRIMAHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIY-- 789

Query: 444 GAKAFQKMASTTGLN 458
           G  AF  +AS  G+ 
Sbjct: 790 GMSAF-GLASNLGIG 803


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +T      +SDP+ LQ I         +R   IA  G  L+
Sbjct: 617 LPLQVNPRTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRSAEGRRIRQAFIAPPGYCLL 675

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  L AFE GED++  T A  F      VT +QR   K +  
Sbjct: 676 AADYSQIELRIMAHLSDDEGLLAAFEAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINF 735

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            L Y   A     +A   G++ +   H ++
Sbjct: 736 GLIYGMSAHG---LAQQLGISRSAAQHYIE 762


>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
 gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
          Length = 938

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      ++   F
Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 788


>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640]
 gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
          Length = 932

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    PR  R H    Q +        ++P+ LQ I         VR    A  G  +V
Sbjct: 646 LPEMISPRDKRVHTTYAQAVAITGRLAGNNPN-LQNIPIRTEEGRKVRRAFTAPPGSVIV 704

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +  
Sbjct: 705 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINF 764

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 765 GLIYGMGQYGLAKSLGIDNLSAKNF 789


>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
 gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
          Length = 944

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L F G ++         P    P+  R H    Q         ++DP+ LQ I       
Sbjct: 636 LDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEG 694

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G  +V AD + IE R++A ++ ++  ++AF  G+D++  T A  F V P
Sbjct: 695 RRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLMRAFREGQDVHRATAAEVFGVTP 754

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +VT +QR   KV+   L Y  G  AF  +AS  G+ 
Sbjct: 755 LEVTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 788


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I        C+R   IA +G K++ AD + I
Sbjct: 676 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIKNEEGHCIRQAFIARKGYKIIAADYSQI 734

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ +   + AF  G+D++ +T A  F +   +VT +QR   K +   L Y  G
Sbjct: 735 ELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIY--G 792

Query: 445 AKAF 448
             +F
Sbjct: 793 MSSF 796


>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
 gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
          Length = 930

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      ++   F
Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 788


>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
 gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
          Length = 930

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 690 VRRAFTAPQGSIIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      ++   F
Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 788


>gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
          Length = 938

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      ++   F
Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 788


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R+  IA +G K++ AD + IE R++A ++ ++  LKAFE G D++  T A  F+V   
Sbjct: 676 SIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEGLLKAFEEGLDVHSATAAEVFDVPLD 735

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +VT +QR   K +   L Y  G  AF  +A     + NT    + T
Sbjct: 736 EVTSNQRRNAKAINFGLIY--GMSAF-GLAKQIDTDRNTAQDYINT 778


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H   +Q +T      +SDP+ LQ I         +R   +A EG K+V AD + I
Sbjct: 676 KTGRVHTSYNQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQI 734

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  + AF  G+D++  T A  F V   +VT +QR   K +   L Y  G
Sbjct: 735 ELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIY--G 792

Query: 445 AKAF 448
             +F
Sbjct: 793 MSSF 796


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H   +Q +T      +SDP+ LQ I         +R   +A EG K+V AD + I
Sbjct: 676 KTGRVHTSYNQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQI 734

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  + AF  G+D++  T A  F V   +VT +QR   K +   L Y  G
Sbjct: 735 ELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIY--G 792

Query: 445 AKAF 448
             +F
Sbjct: 793 MSSF 796


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 51/322 (15%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKRLEPLSSKEQELWYLDQTIND--- 194
           L D    N     R +G   K D      ++  +++ L P  ++E+ L +L + +     
Sbjct: 377 LLDPGNTNPEGVARRYGGEWKEDAAARALLSERLWQALYPRVAEEERLLWLYREVERPLA 436

Query: 195 --------RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                    G  +DV     L+Q V  E  +L+ E+  L  G   +    ++L+  LF E
Sbjct: 437 QVLAHMEATGVRLDVPYLEALSQEVAFELERLEAEVHRLA-GHPFNLNSRDQLERVLFDE 495

Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            GL     TE T +R                     ++ +AVL+L  L EA    GR+  
Sbjct: 496 LGLPPIGKTEKTGKR---------------------STSAAVLEL--LREAHPIVGRILE 532

Query: 307 TLQFLGASRTGRWSGCVFPPQNL--PRPSRSHEELDQIITHLPTSITSDPDPLQI----- 359
             + +    T      + P   L  P+  R H   +Q  T      +SDP+   I     
Sbjct: 533 YRELMKLKST-----YIDPLPRLVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTP 587

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +   +R   IA EG  LV  D + IE RVLA ++G++  ++ F  G+D++  T A  F V
Sbjct: 588 LGQRIRKAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGV 647

Query: 420 APAQVTKDQRAIGKVMELALGY 441
            P  V    R   K +   + Y
Sbjct: 648 PPEGVDGAMRRAAKTVNFGVLY 669


>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
 gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
          Length = 939

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    PR  R H    Q +        ++P+ LQ I         VR    A  G  +V
Sbjct: 646 LPEMISPRDKRVHTTYAQAVAITGRLAGNNPN-LQNIPIRTEEGRKVRRAFTAPPGSVIV 704

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +  
Sbjct: 705 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINF 764

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 765 GLIYGMGQYGLAKSLGIDNLSAKNF 789


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H   +Q +T      +SDP+ LQ I         +R   +A EG K+V AD + I
Sbjct: 676 KTGRVHTSYNQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQI 734

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  + AF  G+D++  T A  F V   +VT +QR   K +   L Y  G
Sbjct: 735 ELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIY--G 792

Query: 445 AKAF 448
             +F
Sbjct: 793 MSSF 796


>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 852

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 105/253 (41%), Gaps = 31/253 (12%)

Query: 192 INDRGYCVDVALAHTLNQIVDVE-RTKLDQ--ELESLTYGLVSSSRCLEKLKTWLFLETG 248
           +  +G  +D A+  TL+  VD E  TKL     L    + + S+ +  + L   L L   
Sbjct: 466 MEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLPI- 524

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
           L       +T Q VL    +  P    +   R   S+     L+TL   +  DGR+  T 
Sbjct: 525 LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKLKSTYLDTLPGLVAKDGRIHTTY 583

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P           + T L   I              R   
Sbjct: 584 H-QAATATGRLSSSDPNLQNIP-----------VRTELGREI--------------RRAF 617

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G +LV AD + +E R+LA +A +   L AF+  ED++  T A  F V P +V +DQ
Sbjct: 618 VAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQ 677

Query: 429 RAIGKVMELALGY 441
           R + K +   + Y
Sbjct: 678 RRVAKTVNFGIAY 690


>gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
          Length = 937

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 748

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      ++   F
Sbjct: 749 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 787


>gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 939

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A  G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 691 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 750

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+   F
Sbjct: 751 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 789


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q +T      +S+P+   I     +   +R   +ASEG +L+ AD + IE R
Sbjct: 597 GRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEVGRRIRQAFVASEGHRLLSADYSQIELR 656

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA ++ +Q  + AF  G D++ +T A  F V P  VT + R   KV+   + Y
Sbjct: 657 ILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEMRRRAKVINFGIVY 710


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      + DP+ LQ I         +R   IA +G K++ AD + 
Sbjct: 656 PKTGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRTEEGRRIRQAFIARKGYKVMAADYSQ 714

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F V   QVT DQR   K +   L Y  
Sbjct: 715 IELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLDQVTSDQRRSAKAINFGLIY-- 772

Query: 444 GAKAF 448
           G  AF
Sbjct: 773 GMSAF 777


>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
 gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
          Length = 957

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 678 PHTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQ 736

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF+ G+D++  T A    V+  QV+ +QR   K +   L Y  
Sbjct: 737 IELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIY-- 794

Query: 444 GAKAF 448
           G  AF
Sbjct: 795 GMSAF 799


>gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
          Length = 938

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P+  R H    Q +       +++P+ LQ I         VR    A +G  +V
Sbjct: 645 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTEEGRKVRRAFTAPQGSVIV 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I         +R   +A  G +LV AD + 
Sbjct: 644 PTTGRLHTSYHQAVTATGRLSSSDPN-LQNIPIRTEQGRRIRQAFVARPGYRLVAADYSQ 702

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G++  L AF  G D++  T A  F VA  +V+ +QR   K +   L Y
Sbjct: 703 IELRIMAHLSGDKGLLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIY 760


>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
 gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
          Length = 935

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 694 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 753

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      ++   F
Sbjct: 754 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 792


>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
 gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
          Length = 937

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    PR +R H    Q +       +++P+ LQ I         VR    A  G  +V
Sbjct: 645 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
          Length = 930

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P+  R H    Q +       +++P+ LQ I         VR    A +G  +V
Sbjct: 645 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      + DP+ LQ I         +R   IA EG K+V AD + 
Sbjct: 658 PKTKRVHTSYHQAVTATGRLSSRDPN-LQNIPVRTEEGRRIRQAFIAREGYKIVAADYSQ 716

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F V    VT +QR   K +   L Y  
Sbjct: 717 IELRIMAHLSQDKGLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINFGLIY-- 774

Query: 444 GAKAF 448
           G  AF
Sbjct: 775 GMSAF 779


>gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
          Length = 983

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P+  R H    Q +       +++P+ LQ I         VR    A +G  +V
Sbjct: 690 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTEEGRKVRRAFTAPQGSVIV 748

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 749 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 808

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 809 GLIYGMGQYGLAKSLGIDNLSAKNF 833


>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
 gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
          Length = 905

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 35/187 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           F   + A R A    + +  L+++++ DGR+  T Q   A+ TGR S      QN+P  +
Sbjct: 600 FLEHLLAHRDAAKLRVTVEGLLKSVHPDGRIHTTFQQTIAA-TGRLSSTEPNLQNIPIRT 658

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392
            +  +                         +R      EG + L+ AD + IE R++A +
Sbjct: 659 EAGRQ-------------------------IRRAFRVGEGFESLLTADYSQIEMRIMAHL 693

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---Q 449
           +G++  ++AF TGEDL+    +R F V PA VT + R+  K M   L Y  G  AF   Q
Sbjct: 694 SGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVKAMSYGLAY--GLSAFGLSQ 751

Query: 450 KMASTTG 456
           ++   TG
Sbjct: 752 QLGIATG 758


>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 929

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      + DP+ LQ I         +R   +A EG +++ 
Sbjct: 646 PQMVHPLTKRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNKEGRRIRQAFVAPEGYRIMA 704

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ +Q  LKAF  G+D++  T A  F +   QVT +QR   K +   
Sbjct: 705 ADYSQIELRIMAHLSQDQGLLKAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFG 764

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 765 LIY--GMSAF 772


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I        C+R   IA +G K++ AD + I
Sbjct: 676 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIKNEEGRCIRQAFIARKGYKIIAADYSQI 734

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ +   + AF  G+D++ +T A  F +   +VT +QR   K +   L Y  G
Sbjct: 735 ELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIY--G 792

Query: 445 AKAF 448
             +F
Sbjct: 793 MSSF 796


>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
          Length = 930

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P+  R H    Q +       +++P+ LQ I         VR    A +G  +V
Sbjct: 645 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
          Length = 916

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P+  R H    Q +       +++P+ LQ I         VR    A +G  +V
Sbjct: 623 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTEEGRKVRRAFTAPQGSVIV 681

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 682 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 741

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 742 GLIYGMGQYGLAKSLGIDNLSAKNF 766


>gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
          Length = 937

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F +AP  
Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 748

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      ++   F
Sbjct: 749 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 787


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EGKK++ AD + IE R++A ++ +   L AF  G+D++  T A  F+V  ++
Sbjct: 678 IRHAFIAPEGKKILAADYSQIELRIMAHLSQDTGLLTAFAEGKDIHKATAAEVFDVDFSE 737

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT DQR   K +   L Y  G  AF
Sbjct: 738 VTSDQRRRAKAVNFGLIY--GMSAF 760


>gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
 gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
          Length = 983

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  
Sbjct: 735 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 794

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+   F
Sbjct: 795 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 833


>gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
          Length = 931

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    PR +R H    Q +       +++P+ LQ I         VR    A  G  +V
Sbjct: 645 LPDMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
          Length = 930

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  
Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+   F
Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
          Length = 930

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  
Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+   F
Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
 gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
          Length = 934

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +T      + DP+ LQ I         +R   +A +G K++ AD + 
Sbjct: 656 PRTQRVHTSYHQAVTATGRLSSRDPN-LQNIPVRTEEGRRIRQAFVARDGYKVMAADYSQ 714

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F V   +VT DQR   K +   L Y  
Sbjct: 715 IELRIMAHLSQDKGLLTAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIY-- 772

Query: 444 GAKAF 448
           G  AF
Sbjct: 773 GMSAF 777


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 127/319 (39%), Gaps = 62/319 (19%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS--SNKKLTPQAIQVFNNRMRAS 284
           + + SS +  E L   L L TG   +    +T Q VL   S +     AI  F  ++   
Sbjct: 519 FNIRSSQQLAELLFGTLGLPTGGKTKGGQTSTAQDVLEKLSGRHPVVDAILEFR-KLEKL 577

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           RS  L+   L   ++  GR+  T   L A+ TGR S      QN+P              
Sbjct: 578 RSTYLE--PLPRLVDGAGRIHTTFNQL-ATATGRLSSSNPNLQNIP-------------- 620

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                +  D      +   +R+C  A+ G +LV AD + +E RVLA M+ +   L AF  
Sbjct: 621 -----VRGD------LGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFRE 669

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T +  ++VA  QV+ DQR   K +   L Y  G    QK+A    + L     
Sbjct: 670 GADIHSRTASLLYDVAQDQVSTDQRRNAKTINFGLIYGMGP---QKLAQELRIPLTEAKA 726

Query: 465 LV-----KTNSAPEEWEDAENFC-------------RWMQENHPEH----------AIED 496
            +     K     E +++AE                R + E H E+          AI  
Sbjct: 727 FIERYFSKLQKLREFYDEAETTARELGYVTTMAGRRRLLPEIHSENTQLKSQARRQAINT 786

Query: 497 LFIGTACERVKKAWRQKHS 515
           L  G+A + +K A    H+
Sbjct: 787 LIQGSAADIIKLAMLAAHA 805


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 11/152 (7%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376
            P +  P+  R H +  Q +       +++P+ LQ I        +  ++ V   E   L
Sbjct: 695 LPNEVNPKTGRIHTQYMQAVAATGRLSSNNPN-LQNIPIRTARGREVRKAFVPRDENHVL 753

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++ E+  + AF+ GED++ +T A+ FNV   +VT+DQR+  K + 
Sbjct: 754 LAADYSQIELRIIAALSEEENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVN 813

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + Y  G  AF  +++ T L+ +    L+ T
Sbjct: 814 FGIVY--GVSAF-GLSNQTDLSRSEAKELIDT 842


>gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
          Length = 975

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  
Sbjct: 735 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 794

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+   F
Sbjct: 795 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 833


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R   IA +G K+V AD + I
Sbjct: 674 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQI 732

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A +A ++  LKAF  G+D++ +T +  F V   +VT +QR   K +   L Y
Sbjct: 733 ELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIY 789


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +       +SDP+ LQ I         +R   +A +G KL+
Sbjct: 676 LPEQINPRTGRIHTSYHQAVAATGRLSSSDPN-LQNIPIRTAEGRRIRQAFVAPKGYKLM 734

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A +A ++  L AF    D++  T A  F V   QVT DQR   K +  
Sbjct: 735 AADYSQIELRIMAHLAKDEGLLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINF 794

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 795 GLIY--GMSAF 803


>gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
          Length = 908

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P+  R H    Q +       +++P+ LQ I         VR    A +G  +V
Sbjct: 623 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 681

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 682 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 741

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 742 GLIYGMGQYGLAKSLGIDNLSAKNF 766


>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 931

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 652 PHTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF+ G+D++  T A    V+  QV+ +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 899

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 104/253 (41%), Gaps = 31/253 (12%)

Query: 192 INDRGYCVDVALAHTLNQIVDVE-RTKLDQ--ELESLTYGLVSSSRCLEKLKTWLFLETG 248
           +  +G  +D A+  TL+  VD E  TKL     L    + + S+ +  + L   L L   
Sbjct: 513 MEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLPI- 571

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
           L       +T Q VL    +  P    +   R   S+     L+TL   +  DGR+  T 
Sbjct: 572 LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKLKSTYLDTLPGLVAKDGRIHTTY 630

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +    E                         +R   
Sbjct: 631 H-QAATATGRLSSSDPNLQNIPVRTELGRE-------------------------IRRAF 664

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G +LV AD + +E R+LA +A +   L AF+  ED++  T A  F V P +V +DQ
Sbjct: 665 VAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQ 724

Query: 429 RAIGKVMELALGY 441
           R + K +   + Y
Sbjct: 725 RRVAKTVNFGIAY 737


>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
 gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
          Length = 975

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  
Sbjct: 735 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 794

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+   F
Sbjct: 795 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 833


>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
 gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
          Length = 931

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 652 PHTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF+ G+D++  T A    V+  QV+ +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 24/170 (14%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q  T      +S+P+   I     +   +R   IA  G  L+  D + I
Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQI 684

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           + RVLA ++ +   ++AF++ +D++  T AR  N+ P++VTK+QR + K +   + Y   
Sbjct: 685 DLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPSKVTKEQRRLAKTVNFGVIYG-- 742

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                   S+ GL   T   L          E+A+ F +   E +P  A+
Sbjct: 743 -------MSSYGLEQATELSL----------EEADKFIKAYFEKYPRVAV 775


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R   IA +G K+V AD + I
Sbjct: 674 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQI 732

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A +A ++  LKAF  G+D++ +T +  F V   +VT +QR   K +   L Y
Sbjct: 733 ELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIY 789


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA+ G  +V AD + IE R++A ++G++  L+AF  GED++  T    F V    
Sbjct: 695 IREAFIAAPGNVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREA 754

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           V+ +QR   KV+   L Y  G  AF  +AS  G+      H +
Sbjct: 755 VSSEQRRYAKVINFGLIY--GMSAF-GLASNLGIEREAAKHYI 794


>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 838

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 134/355 (37%), Gaps = 114/355 (32%)

Query: 290 KLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           KLN+     +++ M+ DGR+R T    G + TGR S      QNLP              
Sbjct: 551 KLNSTFVKGILKHMDEDGRVRTTFIQTGTA-TGRLSSAEPNLQNLP-------------- 595

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                  SD      IS  +R  V A  G  LV AD + IE R+LA ++ ++  L+A+  
Sbjct: 596 ------VSDE-----ISKKIRYAVTAPAGYNLVWADYSQIELRILAHLSQDEKLLEAYRK 644

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T +  F ++  +V +  R I K +   + Y         ++   G+++     
Sbjct: 645 GRDIHTETASYLFGISAEEVDERLRRIAKTVNFGIIYGMSPHG---LSERLGISV----- 696

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                      E+AE +     E  P              +VK+           + N L
Sbjct: 697 -----------EEAEKYIDRYFEKFP--------------KVKEY----------IENTL 721

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A+E+     K I  RKR   PL  +K    N+            R  G  R+ +N T 
Sbjct: 722 REAYEKGY--VKTIFGRKR---PLPELKSSNKNI------------RSFG-ERAAVNAT- 762

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
                            +Q  + DI+   M+   K     G  +VL VHDEIV E
Sbjct: 763 -----------------IQGTAADIMKLAMVKLYKKLEKLGAYMVLQVHDEIVIE 800


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 32/165 (19%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L + +++DGR+R   + +G SR+GR S C  PP                           
Sbjct: 266 LKKFIDNDGRIRAHWRLIG-SRSGRMS-CNNPP--------------------------- 296

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
              LQ +    R   +A EG KL+ +D + IE RVLA ++ ++  +  F  G DL++ T 
Sbjct: 297 ---LQAMPGNSREFFVADEGYKLIGSDYSQIELRVLASISKDETLISYFNNGIDLHLGTA 353

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +  F     +++K++R + K +   + Y   A   QK    +G++
Sbjct: 354 SLIFKKPIDEISKEERQVAKSLNFGIVYGITAYGIQKNLRKSGVD 398


>gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
          Length = 931

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  
Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+   F
Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3]
 gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG+K++ AD + IE R++A ++ ++  L AF  G+D++  T A  F+V  ++
Sbjct: 676 IRHAFIAPEGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSE 735

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT DQR   K +   L Y  G  AF
Sbjct: 736 VTSDQRRRAKAVNFGLIY--GMSAF 758


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 125/307 (40%), Gaps = 78/307 (25%)

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            +R   +A EGKKL+ AD + IE R+LA +A      +AFE G D++  T +  F V   Q
Sbjct: 804  IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQ 863

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            +T D R   K +   + Y  G  AF  +A   G+                  E+A  F +
Sbjct: 864  MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
               E  P   I D +I T     K++ R+K   V+ L+  +                   
Sbjct: 905  QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                  Y +   NN     PS R+ V       R  +N   +         G   + I +
Sbjct: 940  ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973

Query: 604  AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGL 661
            A++R    E  + A K    ++L VHDE+V E PD DE  A++  + H+M   P+ A  L
Sbjct: 974  AMTR---MEDALGAEKLAARMLLQVHDELVFEVPD-DEVEATIPVIAHVMEEAPAPALSL 1029

Query: 662  --PLKAE 666
              PL  E
Sbjct: 1030 SVPLVVE 1036


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 4/106 (3%)

Query: 363 CVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IA  E   L+ AD + IE R++A + GE+  +KAF+  ED++ +T A+ FN+  
Sbjct: 709 LIRKAFIARDENYTLLSADYSQIELRIIAALCGEENMIKAFQNHEDIHKSTAAKVFNIPL 768

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            +VTK+QR+  K +   + Y  G  AF  +++ T L+    A L++
Sbjct: 769 DEVTKEQRSHAKTVNFGIIY--GVSAF-GLSNQTNLSRKESAELIE 811


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 11/152 (7%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIA-SEGKKL 376
            P +  P+  R H   +Q +       +++P+ LQ I         VR   I   E   L
Sbjct: 655 LPNEINPKTGRVHTIYNQAVAATGRLSSNNPN-LQNIPIRTERGQQVRKAFIPRDENHVL 713

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++G++  L AF+  ED++  T ++ FNV   +VT++QR   K + 
Sbjct: 714 MAADYSQIELRIIAALSGDEGMLSAFQNNEDIHSATASKVFNVPLEEVTREQRGNAKTVN 773

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + Y  G  AF  ++  T LN +    L++T
Sbjct: 774 FGIIY--GVSAF-GLSQQTNLNRSEAKELIET 802


>gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
 gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
          Length = 96

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1  MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
          M  L +D ET S ++L KCG+ KYAE  D  ++LF +  D   V++ D      +P+V+ 
Sbjct: 1  MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60

Query: 59 EALENTDVTIVAHNSYFERTVL 80
           AL +  VT  A N+ FER  L
Sbjct: 61 SALTDETVTKWAFNAQFERVCL 82


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q IT      ++DP+   I     +   +R   IA +   LV AD + +E
Sbjct: 603 KDGRIHSSFNQTITTTGRISSTDPNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVE 662

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA M+ +   ++AF +GED++  T ++ FNV   QVT + R+  K +   + Y
Sbjct: 663 LRVLAHMSQDPHMIEAFNSGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGIIY 718


>gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
 gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
          Length = 904

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 25/151 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L +A+++DGR+  T Q   A+ TGR S      QN+P  + +   + ++        
Sbjct: 616 VQGLQKAVDADGRIHTTYQQTIAA-TGRLSSVDPNLQNIPIRTEAGRRIREVF------- 667

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                            V+ S    L+ AD + IE R++A ++G++  ++AF  GEDL+ 
Sbjct: 668 -----------------VVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHR 710

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
              ++ F VAP +VT + RA  K M   L Y
Sbjct: 711 YVGSKVFQVAPEEVTAEMRAKVKAMSYGLAY 741


>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
 gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
          Length = 890

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 8/134 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q +T      +SDP+   I     +   +R C + + G+ LV AD + I
Sbjct: 612 PDTGRVHTSFNQCVTATGRLSSSDPNLQNIPVRGELGRRMRGCFVPAPGRLLVSADYSQI 671

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +   L+    G D++  T AR F+V P  VT++ R   K +   + Y  G
Sbjct: 672 ELRVLAHLSQDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLY--G 729

Query: 445 AKAFQKMASTTGLN 458
             AF ++A   G++
Sbjct: 730 MSAF-RLAREQGVS 742


>gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus]
          Length = 169

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           DP+ LQ I   +RS   A EGK LV++D + IE R+ +   G++  ++AF+ G DL+  T
Sbjct: 1   DPN-LQNIPRELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYT 59

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            +        +V+K++R + K +   L Y   AK   + A + G++L+
Sbjct: 60  ASILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLS 107


>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
 gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
          Length = 948

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS----- 361
            L + G S+         P Q   +  R H +  Q +       +++P+ LQ I      
Sbjct: 646 VLDYRGLSKLKSTYVDALPAQVNAKTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTER 704

Query: 362 --DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
                ++ V  +E   L+ AD + IE R++A ++ E+  +KAF+ GED++ +T A+ FNV
Sbjct: 705 GRQVRKAFVPRNEDYVLLAADYSQIELRIIAALSQEETMMKAFQEGEDIHASTAAKVFNV 764

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
              +VT++QR+  K +   + Y  G  AF  +++ T L  +    L+ T
Sbjct: 765 PIDEVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLTRSESKELIDT 810


>gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
          Length = 1030

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 35/179 (19%)

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLP 330
           Q I  +  RM+   +    L+ LV  + SDGR+  T  Q + A  TGR S      QN+P
Sbjct: 728 QLILDYRERMKIKNT---YLDALVHDIRSDGRIHSTFNQTIAA--TGRLSSSDPNLQNIP 782

Query: 331 -RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            R S  H                           VR   +       +  D + IE R+L
Sbjct: 783 TRSSLGHR--------------------------VRKAFVLPRNHLFLACDYSQIELRLL 816

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A ++ ++  + AF+TG D +  T AR F+V+P +VT   R+  K +   + Y  G +AF
Sbjct: 817 AHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNFGIVY--GQQAF 873


>gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 912

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 32/210 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+  LF E G+     T+T       + + L  +    F   +   R A  +L T VE
Sbjct: 567 KQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFEKTEHPFLQHLLEHRDAT-RLRTTVE 625

Query: 297 AM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +      DGR+  TLQ   A+ TGR S      QN+P   R+ E               
Sbjct: 626 GLIKSVADDGRIHTTLQQTIAA-TGRLSSIEPNLQNIP--VRTEE--------------- 667

Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R   +  +G  +L+ AD + IE R++A ++ ++  ++AF +GEDL+  
Sbjct: 668 --------GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTF 719

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             +R+F+V  A++T +QR   K M   L Y
Sbjct: 720 VASRAFSVPAAEITPEQRYRVKAMSYGLAY 749


>gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17]
 gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46]
 gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
 gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
          Length = 904

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 41/255 (16%)

Query: 196 GYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHL 251
           G  VD+ +   L +Q  D  R   D       YG++     L   ++L+  LF E G+  
Sbjct: 519 GIAVDLPMLTELQSQFGDQIRDAADA-----AYGVIGKQINLGSPKQLQVVLFDELGMPK 573

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL 308
              T+T       + + L  +    F   + A R      + ++ L++A+ +DGR+  T 
Sbjct: 574 TKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGLLQAVAADGRIHTTF 633

Query: 309 -QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
            Q + A  TGR S      QN+P                   I +D       S  +R  
Sbjct: 634 NQTIAA--TGRLSSTEPNLQNIP-------------------IRTD------ASRRIRDA 666

Query: 368 VIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            +  +G  +L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT 
Sbjct: 667 FVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTG 726

Query: 427 DQRAIGKVMELALGY 441
           + R   K M   L Y
Sbjct: 727 ELRRRVKAMSYGLAY 741


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H   +Q  T      +S P+ LQ I         +RS  IA++G  L+ AD + 
Sbjct: 616 PRTGRVHTSFNQCGTATGRLSSSSPN-LQNIPIRTEEGRRIRSAFIAADGCLLLAADYSQ 674

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           I+ RVLA  + ++  + AF+ G+D++  T A  FNV+P  VT + R + K +   + Y  
Sbjct: 675 IDLRVLAHYSQDRELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVY-- 732

Query: 444 GAKAF 448
           G  +F
Sbjct: 733 GMSSF 737


>gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp]
 gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp]
          Length = 931

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  PR  R H    Q +       +SDP+ LQ I         +R   +A +G K++
Sbjct: 647 LPEQINPRTGRIHTSYHQAVAATGRLSSSDPN-LQNIPIRTAEGRRIRQAFVAPKGYKMM 705

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A +A ++  L AF    D++  T A  F VA  +VT DQR   K +  
Sbjct: 706 AADYSQIELRIMAHLAKDEGLLDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINF 765

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 766 GLIY--GMSAF 774


>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
 gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
          Length = 938

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P+  R H    Q +       +++P+ LQ I         VR    A +G  +V
Sbjct: 645 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTEEGRKVRRAFTAPQGSVIV 703

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +  
Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINF 763

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            L Y  G     K      L+   F
Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGI 384
           P   R H    Q +T      +SDP+    P++   D  +R   IA EG ++V AD + I
Sbjct: 654 PVSGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEDRRIRQAFIAPEGYRIVAADYSQI 713

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ +   LKAF  G+D++  T A  F V   +V  +QR   K +   L Y  G
Sbjct: 714 ELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIY--G 771

Query: 445 AKAF 448
             AF
Sbjct: 772 MSAF 775


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA +G K++ AD + 
Sbjct: 673 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQ 731

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   + AF  G+D++ +T A  F +   QVT +QR   K +   L Y  
Sbjct: 732 IELRIMAHLSNDAGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIY-- 789

Query: 444 GAKAF 448
           G  +F
Sbjct: 790 GMSSF 794


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q  T      +S+P+   I     +   +R   IA +G  ++  D + I
Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQI 684

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + RVLA ++G+   ++AF   +D++  T AR  N+ P++VTK+QR + K +   + Y
Sbjct: 685 DLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIY 741


>gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
 gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
          Length = 930

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 8/149 (5%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV 378
            PP   P   R H   +Q +       + DP+   I     I   +R   +A+ GK LV 
Sbjct: 646 LPPLVNPHTGRIHTSFNQAVAATGRLSSQDPNLQNIPIRKDIGRRIRRAFVAAPGKTLVS 705

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
            D + IE RV+A ++G++  ++AF+   D++  T A  F++   ++  D+R + K +   
Sbjct: 706 IDYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDERRVAKAVNYG 765

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L Y  G   F  +A + G++    AH ++
Sbjct: 766 LMY--GQSEF-GLAQSLGISRAQAAHYME 791


>gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
           polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 43/287 (14%)

Query: 171 IFKRL-EPLSSKEQELWYLDQT----------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +F+ L E L  +E+ LW  ++           +   G  +DVA    L+  V+ E  +L+
Sbjct: 411 LFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQALSLEVEAEVRQLE 470

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +E+  L  G   +    ++L+  LF E GL     TE T +R  S+      +      +
Sbjct: 471 EEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVD 529

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R+   R      NT ++ +                          P    P+  R H   
Sbjct: 530 RILQYRELTKLKNTYIDPL--------------------------PALVHPKTGRLHTRF 563

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q  T      +SDP+   I     +   +R   +A EG  LVV D + IE RVLA ++G
Sbjct: 564 NQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSG 623

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++  ++ F+ G D++  T +  F V+P  V    R   K +   + Y
Sbjct: 624 DENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLMRRAAKTINFGVLY 670


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q  T      +S+P+   I     +   +R   IA +G  ++  D + I
Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQI 684

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + RVLA ++G+   ++AF   +D++  T AR  N+ P++VTK+QR + K +   + Y
Sbjct: 685 DLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIY 741


>gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92]
 gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054]
 gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
 gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
          Length = 904

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 35/223 (15%)

Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           YG++     L   ++L+  LF E G+     T+T       + + L  +    F   + A
Sbjct: 546 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 605

Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            R      + ++ L++A+ +DGR+  T  Q + A  TGR S      QN+P         
Sbjct: 606 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 654

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                     I +D       S  +R   +  +G  +L+ AD + IE R++A ++G++  
Sbjct: 655 ----------IRTD------ASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 698

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 699 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 741


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EGK+++ AD + IE R++A ++ ++  L+AF  G+D++  T A  F+VA   
Sbjct: 683 IRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRAFAEGKDIHRATAAEVFDVAFET 742

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 743 VTSEQRRRAKAVNFGLIY--GMSAF 765


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q  T      +S+P+   I     +   +R   IA +G  ++  D + I
Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQI 684

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + RVLA ++G+   ++AF   +D++  T AR  N+ P++VTK+QR + K +   + Y
Sbjct: 685 DLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIY 741


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
          Length = 985

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA +G K++ AD + 
Sbjct: 708 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQ 766

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   + AF  G+D++ +T A  F +   QVT +QR   K +   L Y  
Sbjct: 767 IELRIMAHLSNDAGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIY-- 824

Query: 444 GAKAF 448
           G  +F
Sbjct: 825 GMSSF 829


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 10/143 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +       ++DP+ LQ I         VR   IA  G  +  AD + 
Sbjct: 662 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFIAPPGSVIASADYSQ 720

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L+AF  G D++  T A  F   P QV+ +QR   KV+   L Y  
Sbjct: 721 IELRIMAHISGDESLLRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIY-- 778

Query: 444 GAKAFQKMASTTGLNLNTFAHLV 466
           G  +F  +A   G+     A  +
Sbjct: 779 GMSSF-GLARNLGIETKAAASYI 800


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379
           P+ +    R H    Q +T      ++DP+ LQ I         +R   +A EG KLV A
Sbjct: 637 PEMIQHTGRIHTSYHQAVTATGRLSSTDPN-LQNIPIRTQEGRRIRQAFVAPEGHKLVAA 695

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++ ++  L AF   ED++  T A  F VA   VT +QR   K +   L
Sbjct: 696 DYSQIELRIMAHLSQDKGLLDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAINFGL 755

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 756 IY--GMSAF 762


>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
 gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
          Length = 949

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +A  E   L+ AD + IE R++A ++GE+  + AF+ GED++  T A+ F+VA  
Sbjct: 709 IRKAFVARDENYTLISADYSQIELRIIAALSGEENMIAAFQNGEDIHRATAAKVFDVALE 768

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           +V+++QR+  K +   + Y  G  AF  +++ T L+ +  A L+
Sbjct: 769 EVSREQRSNAKTVNFGIIY--GVSAF-GLSNQTSLSRSESAALI 809


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G +L+ +D + IE R++A ++G+   LKAF  G+D++  T A  FN+   +
Sbjct: 700 IRQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGKDIHQATAAEIFNMPLEE 759

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 760 VTSEQRRSAKAVNFGLIY--GMSAF 782


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   IAS+G K+V AD + 
Sbjct: 649 PITGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIASKGHKIVAADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G D++  T A  F +A  +VT +QR   K +   L Y  
Sbjct: 708 IELRIMAHLSQDKGLLSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINFGLIY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 363 CVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   I  +E   L+ AD + IE R++A ++GE+  + AF+  +D++ +T A+ FNVA 
Sbjct: 707 LIRKAFIPRNENYTLISADYSQIELRIIAALSGEENMIAAFQNNQDIHKSTAAKVFNVAL 766

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
             VTK+QR+  K +   + Y  G  AF  +++ T L+    A L+
Sbjct: 767 EDVTKEQRSNAKTVNFGIIY--GVSAF-GLSNQTSLSRKESAELI 808


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +       ++DP+ LQ I         +R   I   G KLV AD + 
Sbjct: 638 PQTGRVHTSYHQAVAATGRLSSTDPN-LQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQ 696

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L AF  G+D++  T A  F VA   VT D R   K +   L Y  
Sbjct: 697 IELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKAINFGLIY-- 754

Query: 444 GAKAF 448
           G  AF
Sbjct: 755 GMSAF 759


>gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1]
 gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1]
          Length = 986

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 137/342 (40%), Gaps = 51/342 (14%)

Query: 171 IFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + K+LE L  KE            L++++Q     G CV     H   + + V+  +L+Q
Sbjct: 573 LMKKLEELDMKELFYTIEMPLIFSLFHMEQA----GICVKREELHDYGEKLRVQIERLEQ 628

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFN 278
           E+   T G   +    ++L   LF +  L     T+T         +KL P+   +Q   
Sbjct: 629 EIYGET-GEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKIL 687

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +  + ++      + L   +  DGR+ GT  Q + A  TGR S      QN+P       
Sbjct: 688 DYRQLTKLKSTYADGLAGYIREDGRIHGTFNQTITA--TGRLSSTEPNLQNIPVRMELGR 745

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           E                         +R   +  EG   V AD + IE RVLA M+G++ 
Sbjct: 746 E-------------------------IRRVFVPEEGSVFVDADYSQIELRVLAHMSGDER 780

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++A+   ED++  T +  F+V   +VT  QR   K +   + Y  G  AF     +  L
Sbjct: 781 LIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVY--GISAF---GLSEDL 835

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHAIEDLF 498
           ++     L   N   E + D + F  R ++E   +  +  +F
Sbjct: 836 SITRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVTTMF 877


>gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 857

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA-DLAGIEA 386
           R H   +Q++T      +SDP+ LQ I         +RS  +  EG    ++ D + +E 
Sbjct: 582 RVHTSFNQMVTATGRLSSSDPN-LQNIPVRTEEGKVIRSLFVPGEGYDFFISSDYSQVEL 640

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA M+G++  ++AFE  ED++  T +  F V   +VT +QR+  K +   + Y
Sbjct: 641 RVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIY 695


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 22/238 (9%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379
           P+ +   SR H   +Q+ T      +S P+ LQ I         +R+C IA  G  L  A
Sbjct: 605 PKLVGEDSRLHTHFNQLATATGRLSSSQPN-LQNIPIRGKHGPRMRACFIAGPGAMLAAA 663

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA  +G+   + AF   ED++  T A   +  P  V  D+R   K +   L
Sbjct: 664 DYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAALLTDKQPQDVLADERRNAKTINFGL 723

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G    QK+A    + +N     +      E + D     +   +   + A    F+
Sbjct: 724 IYGMGP---QKLARELDITVNQAKEFI------ERYFDKLATLKAYYDTIVKDAESHGFV 774

Query: 500 GTACERVKKAWRQKHSRVSELWNEL-HQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            T   R ++   + HSR ++L ++   QA    I+   A I +    + +V   KDK+
Sbjct: 775 TTLAGR-RRLLPELHSRNTQLVSQARRQAVNTVIQGSAADIIK----MAMVAAHKDKD 827


>gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 879

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 32/189 (16%)

Query: 264 SSNKKLTPQAIQVFNNRMRASRSA--VLKLNTLVE-AMNSDGRLRGTLQFLGASRTGRWS 320
           +S   L  QA   F N +   R A  ++++ T +E A++  GR+  T +  G+S TGR +
Sbjct: 561 ASLADLQEQAPHPFLNLLLQHRDATKLVQIITGIEKAIDDSGRVHTTYEQAGSS-TGRIA 619

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVA 379
                 QN+P  + +  +                         +RS   A  G   L+ A
Sbjct: 620 SNDPNLQNVPIKTATGRQ-------------------------IRSAFEAGAGFDTLLTA 654

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++G++  ++AF  GEDL+    +R F V PA+VT + R   K M   L
Sbjct: 655 DYSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGSRIFGVEPAEVTAEMRTKVKAMSYGL 714

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 715 AY--GLSAF 721


>gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
 gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
          Length = 857

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA-DLAGIEA 386
           R H   +Q++T      +SDP+ LQ I         +RS  +  EG    ++ D + +E 
Sbjct: 582 RVHTSFNQMVTATGRLSSSDPN-LQNIPVRTEEGKVIRSLFVPGEGYDFFISSDYSQVEL 640

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA M+G++  ++AFE  ED++  T +  F V   +VT +QR+  K +   + Y
Sbjct: 641 RVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIY 695


>gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
          Length = 930

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A  G  +V AD + IE R++A ++G++  + AF+ GED++  T A  F  AP  
Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           V+ +QR   K +   L Y  G     K      L+   F
Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 788


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR    H   +Q +T      +SDP+ LQ I         +R C I  +G     AD + 
Sbjct: 642 PRTGHIHTSFNQTVTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RV+A ++G++  ++AF+ G D++  T A+ +      VT+D+R   K     + Y  
Sbjct: 701 IELRVMAHLSGDKHMIEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIY-- 758

Query: 444 GAKAFQKMASTTGLNLNTFAHLV 466
           G   F  +A   G++ N    L+
Sbjct: 759 GITVF-GLAERLGIDRNEAKQLI 780


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +T      +SDP+ LQ I         +R   IA++G K+V AD + I
Sbjct: 633 RTQRVHTSYHQAVTATGRLSSSDPN-LQNIPIRSEEGRRIREAFIAADGYKIVAADYSQI 691

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  L AF  G D++  T A  F V   +VT D R   K +   L Y  G
Sbjct: 692 ELRIMAHLSQDKGLLSAFANGLDVHSATAAEVFGVELEEVTSDMRRKAKAVNFGLIY--G 749

Query: 445 AKAF 448
             AF
Sbjct: 750 MSAF 753


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
           R  L + G ++         P    P   R H    Q +       ++DP+ LQ I    
Sbjct: 595 RLILDYRGMAKLKNTYADALPQMINPDTGRVHTHFQQAVAATGRLSSNDPN-LQNIPVRT 653

Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   +A EG  L+ AD + IE R+LA ++G+   L+AF  GED++  T A  F+
Sbjct: 654 EQGRRIRQAFVAEEGHWLLSADYSQIELRILAHLSGDARLLQAFAEGEDIHAVTAAEVFD 713

Query: 419 VAPAQVTKDQRAIGKVMELALGY 441
           +AP  V    R   K +   L Y
Sbjct: 714 LAPEDVDSAARRAAKAINFGLIY 736


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q IT      ++DP+ LQ I         VR   +  +G K V AD + I
Sbjct: 652 RTGRVHTSYHQAITATGRLSSTDPN-LQNIPIRNEEGRRVRQAFVPRKGNKFVAADYSQI 710

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  L AF  G+D++  T +  F V   +VT +QR   K +   L Y  G
Sbjct: 711 ELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIY--G 768

Query: 445 AKAF 448
             AF
Sbjct: 769 MSAF 772


>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
 gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
          Length = 936

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 11/142 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      +SDP+ LQ I         +R   IA +G K+V AD + IE 
Sbjct: 660 GRVHTSYHQAVTVTGRLSSSDPN-LQNIPIRSEQGRRIRQAFIAPQGYKIVAADYSQIEL 718

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ---- 442
           R++A ++ ++  L+AF TG D++  T +  F+V+  +VT +QR   K +   L Y     
Sbjct: 719 RIMAHLSQDKGLLEAFSTGLDIHKATASEVFSVSVDEVTTNQRRSAKAINFGLIYGMSAF 778

Query: 443 GGAKAFQKMASTTGLNLNTFAH 464
           G AK  +   S   L ++ + H
Sbjct: 779 GLAKQLKISRSDAKLYMDKYFH 800


>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
 gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
          Length = 977

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +       +SDP+ LQ I         +R   IA  G +++ AD + 
Sbjct: 699 PKTGRVHTTYSQAVAITGRLASSDPN-LQNIPVRTPEGRRIREAFIAPPGHQMMSADYSQ 757

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   LKAF  GED++  T +  F V  A+V  +QR   KV+   L Y  
Sbjct: 758 IELRIMAHISQDAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAKVINFGLIY-- 815

Query: 444 GAKAFQKMASTTGL 457
           G  AF  +A+  G+
Sbjct: 816 GMSAF-GLAANLGI 828


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 11/172 (6%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-- 361
           +R  L++ G S+         P Q   R  R H +  Q +       +++P+ LQ I   
Sbjct: 639 IRNVLEYRGLSKLKSTYVDALPLQVEERTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIR 697

Query: 362 -----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                   ++ V   E   L+ AD + IE R++A ++ E   ++AF+ GED++ +T ++ 
Sbjct: 698 TERGRQVRKAFVPRDEDYTLLAADYSQIELRIIAALSEEDTMIEAFKNGEDIHASTASKV 757

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           F+V   +VT++QR+  K +   + Y  G  AF  +++ T L+      L++T
Sbjct: 758 FDVPLDEVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLSRTEAKELIET 806


>gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 879

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 33/164 (20%)

Query: 290 KLNTLVEAMNS----DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           KL  +++A+++    DGR+  T    G S+TGR S      QN+P   R+ E        
Sbjct: 586 KLKQIIDALDTATGPDGRIHTTYVQTG-SQTGRLSSTDPNLQNIP--IRTEE-------- 634

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                          S  +R+     EG + L+ AD + IE R++A ++G+   ++AF +
Sbjct: 635 ---------------SRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNS 679

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           GEDL+    AR F V PA+VT   R   K M   L Y  G  AF
Sbjct: 680 GEDLHRFVGARVFGVEPAEVTPAMRTKVKAMSYGLVY--GLSAF 721


>gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2]
 gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2]
          Length = 931

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382
           LP   R H    Q +       ++DP+ LQ I         VR   +A EGK +  AD +
Sbjct: 652 LPSDGRVHTHYAQAVAVTGRLSSNDPN-LQNIPVRTPEGRRVREAFVAPEGKLIASADYS 710

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R++A ++G++  L AF+ G D++  T A  F V+  +V+ +QR   KV+   L Y
Sbjct: 711 QIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIY 769


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 122/300 (40%), Gaps = 43/300 (14%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206
           F E       ++  +F+ L P  S E+ LW   +           +  RG  +DV L   
Sbjct: 400 FTEDAAERALLSERLFQTLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L+  ++ E  +L+ E+  L  G   +    ++L+  LF E GL       T   R   + 
Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           K+ T Q        + A R A    + +VE +         LQ+   S+         P 
Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381
              PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+ AD 
Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+D++  T A  F + PA V +  R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQKMRRAAKTVNFGVLY 671


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile]
          Length = 882

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P  +R H   +Q IT      +++P+    P+++ +   +R   IA +  KLV AD + +
Sbjct: 604 PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQV 663

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   K +   + Y
Sbjct: 664 ELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIY 720


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P+ +R H   +Q  T      +SDP+   I     +   +R   +A EG KLVV D + I
Sbjct: 553 PKTNRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWKLVVLDYSQI 612

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K +   + Y
Sbjct: 613 ELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLY 669


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R   I ++G K+V AD + I
Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFITNKGYKIVAADYSQI 739

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR   K +   L Y
Sbjct: 740 ELRIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P  +R H   +Q IT      +++P+    P+++ +   +R   IA +  KLV AD + +
Sbjct: 604 PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQV 663

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   K +   + Y
Sbjct: 664 ELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIY 720


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P  +R H   +Q IT      +++P+    P+++ +   +R   IA +  KLV AD + +
Sbjct: 604 PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQV 663

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   K +   + Y
Sbjct: 664 ELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIY 720


>gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
 gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
          Length = 911

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   I +  K  +  D + IE RVLA M+ E   +KAF    D+++      FN++  Q
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQNADIHLQAAKLIFNISDNQ 720

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +T +QR I KV    + Y  G   F  +A+   +N+N    ++K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLANDLNMNVNQAKQMIK 761


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +T      +S+P+ LQ I         +R   +A +G KL+ AD + I
Sbjct: 648 RTGRVHTSYHQAVTATGRLSSSEPN-LQNIPIRSEQGRRIRQAFVAEKGYKLLAADYSQI 706

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  L AF  GED++  T A  F V   +V  DQR   K +   L Y  G
Sbjct: 707 ELRIMAHLSEDKGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINFGLIY--G 764

Query: 445 AKAF 448
             AF
Sbjct: 765 MSAF 768


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 33/182 (18%)

Query: 281 MRASRSAVLK---LNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
           +R  R + LK   ++ L+E +N   GR+    + +GA  TGR S      QN+P  S   
Sbjct: 644 LRYRRLSKLKSTYVDALIELINQQTGRVHTQYRQIGAE-TGRLSSDSPNLQNIPVRSEEG 702

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            E                         +R   +A  G  L+ AD + IE RVLA +  + 
Sbjct: 703 RE-------------------------IRRAFVARPGHVLMTADYSQIELRVLAHITADP 737

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++ F+TG+D++  T AR F++   +V+K+QR I K+    + Y  G  +F  +A+ T 
Sbjct: 738 ALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIY--GISSF-GLAARTA 794

Query: 457 LN 458
           L+
Sbjct: 795 LS 796


>gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44]
 gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44]
          Length = 937

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382
           LP   R H    Q +       ++DP+ LQ I         VR   +A EGK +  AD +
Sbjct: 658 LPSDGRVHTHYAQAVAVTGRLSSNDPN-LQNIPVRTPEGRRVREAFVAPEGKLIASADYS 716

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R++A ++G++  L AF+ G D++  T A  F V+  +V+ +QR   KV+   L Y
Sbjct: 717 QIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIY 775


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206
           F E       ++  +F+ L P  S E+ LW   +           +  RG  +DV L   
Sbjct: 400 FTEDAAERALLSERLFQNLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L+  ++ E  +L+ E+  L  G   +    ++L+  LF E GL       T   R   + 
Sbjct: 459 LSFELEKEMERLEGEIFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           K+ T Q        + A R A    + +VE +         LQ+   S+         P 
Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381
              PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+ AD 
Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+D++  T A  F + PA V    R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P  +R H   +Q IT      +++P+    P+++ +   +R   IA +  KLV AD + +
Sbjct: 604 PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQV 663

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   K +   + Y
Sbjct: 664 ELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIY 720


>gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1]
 gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1]
          Length = 965

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 124/286 (43%), Gaps = 52/286 (18%)

Query: 170 EIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           ++F RLE PL      L  ++Q     G  +DV     L + +  E  +++Q++ ++  G
Sbjct: 549 DVFYRLEMPLVPV---LVRMEQA----GILLDVPYMRALGERMGRELEQIEQQIYAIA-G 600

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---------VFNN 279
              +    ++L   LF   G  + +L  T   R  +    LT QA++         +   
Sbjct: 601 QTFNINSGDQLSEVLF---GPKI-NLPTTGLDRTRTGRYSLTAQALEELQASDTTGIIEL 656

Query: 280 RMRASRSAVLK---LNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            +R  R + LK   ++ L   +N + GR+      LGA+ TGR S      QN+P  +R+
Sbjct: 657 ILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPNLQNIP--TRT 713

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
            E  +                       VR   IA+ G  L+ AD + IE RVLA M G+
Sbjct: 714 EEGRE-----------------------VRRGFIAAPGHLLIAADYSQIELRVLAHMTGD 750

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
              ++ F  G D++  T AR F V  + V K+QR I K +   + Y
Sbjct: 751 PNLIQTFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIY 796


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           P+ ++ H   +Q +       +S+P+   I + D     +R   IA  G  L+ AD + +
Sbjct: 671 PKTNKIHTSFNQTVVSTGRLSSSNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQV 730

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  L AF +G+D++  T AR F V   +VT D R   K     + Y  G
Sbjct: 731 ELRIMAHLSGDRNMLSAFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIY--G 788

Query: 445 AKAF 448
             AF
Sbjct: 789 ISAF 792


>gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1]
 gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1]
          Length = 937

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382
           LP   R H    Q +       ++DP+ LQ I         VR   +A EGK +  AD +
Sbjct: 658 LPSDGRVHTHYAQAVAVTGRLSSNDPN-LQNIPVRTPEGRRVREAFVAPEGKLIASADYS 716

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R++A ++G++  L AF+ G D++  T A  F V+  +V+ +QR   KV+   L Y
Sbjct: 717 QIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIY 775


>gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
 gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
          Length = 887

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 19/179 (10%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   IA  G K++  D + 
Sbjct: 608 PTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNQEGRRIRQAFIAPSGWKIMAVDYSQ 666

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L AF+ G+D++  T A    V+  QVT +QR   K +   L Y  
Sbjct: 667 IELRIMAHLSGDPALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNFGLIY-- 724

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA----IEDLF 498
           G  AF  +A   G+  +   H +      + +E      R+M+E     A    +E LF
Sbjct: 725 GMSAF-GLAKQLGIPRSEAQHYMD-----KYFERYPGVLRYMEETRSMAAEQGYVETLF 777


>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
 gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
          Length = 912

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 10/156 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G S+         P    P   R H    Q +       ++DP+ LQ I       
Sbjct: 612 LEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVAVTGRLASNDPN-LQNIPIRNAEG 670

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA+ G  +V AD + IE R++A ++G++  L+AF  GED++  T A  F V  
Sbjct: 671 RRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENMLQAFADGEDIHRATAAEIFGVER 730

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             V  +QR   KV+   L Y  G  AF  +A   G+
Sbjct: 731 RAVDSEQRRYAKVINFGLIY--GMSAF-GLAGNLGI 763


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A +G ++V AD + 
Sbjct: 649 PVSGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  GED++  T +  F V  ++VT +QR   K +   L Y  
Sbjct: 708 IELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A +G ++V AD + 
Sbjct: 649 PVSGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  GED++  T +  F V  ++VT +QR   K +   L Y  
Sbjct: 708 IELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
           polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206
           F E       ++  +F+ L P  S E+ LW   +           +  RG  +DV L   
Sbjct: 400 FTEDAAERALLSERLFQNLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L+  ++ E  +L+ E+  L  G   +    ++L+  LF E GL       T   R   + 
Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           K+ T Q        + A R A    + +VE +         LQ+   S+         P 
Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381
              PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+ AD 
Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+D++  T A  F + PA V    R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671


>gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii]
 gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii]
          Length = 881

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIASEGKKLVVADLAG 383
           P   R H  L+Q +       ++DP+ LQ I         +R   IA  G +L+ AD + 
Sbjct: 599 PETKRLHTSLNQTVAATGRLSSTDPN-LQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQ 657

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E R+LA ++ +   L+ FE GED+++ T    FN+   +VT+D R   K +   + Y  
Sbjct: 658 VEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVFGIVY-- 715

Query: 444 GAKAFQKMASTTGL 457
           G   F  +AS  G+
Sbjct: 716 GISPF-GLASNIGV 728


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   +A+ G KLV AD + IE R++A ++ +   L AF  G+D++  T A  F V   +
Sbjct: 687 VRQAFVAAPGCKLVAADYSQIELRIMAHLSEDPSLLAAFSAGQDIHRATAAEVFGVENEE 746

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           VT DQR   K +   L Y  G  AF  +A   G+N    A  ++
Sbjct: 747 VTIDQRRSAKAINFGLIY--GMSAF-GLARQLGINRKQAAEYIE 787


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 648 RVHTSYHQALTATGRLSSSDPNLQNIPIRGEIGRQIRKAFIAPEGRILLAADYSQIELRL 707

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + ++  L AF+ G+D++  T A   N+   +VT DQR   K +   L Y
Sbjct: 708 MAHFSQDEALLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNFGLLY 760


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +       +SDP+ LQ I         +R   +A  G KL+ AD + 
Sbjct: 634 PKTGRVHTSYHQAVAATGRLSSSDPN-LQNIPVRTAEGRRIRKAFVAEPGCKLLAADYSQ 692

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +E R++A ++G++   +AF  G D++  T A  F +AP +V  +QR   K +   L Y
Sbjct: 693 VELRIMAHLSGDEGLRQAFAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINFGLIY 750


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206
           F E       ++  +F+ L P  S E+ LW   +           +  RG  +DV L   
Sbjct: 400 FTEDAAERALLSERLFQNLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L+  ++ E  +L+ E+  L  G   +    ++L+  LF E GL       T   R   + 
Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           K+ T Q        + A R A    + +VE +         LQ+   S+         P 
Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381
              PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+ AD 
Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+D++  T A  F + PA V    R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EGKK++ AD + IE R++A ++ ++  L AF  G+D++  T A  F+V   +
Sbjct: 677 IRHAFIAREGKKVLAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFDVDFGE 736

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 737 VTTEQRRRAKAVNFGLIY--GMSAF 759


>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
 gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
          Length = 893

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 35/228 (15%)

Query: 221 ELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAI 274
           +LE + Y L  S   +   ++L   LF +  L +   T+T   T  +VL   +K  P   
Sbjct: 532 DLEKIIYELAGSEFNINSPKQLSKILFEDLKLPIIKKTKTGYSTNAQVLEKLRKKHPIIE 591

Query: 275 QVFNNR-MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           ++   R M   +S  L+  +L E ++ DGR+R T +    + TGR S      QNLP   
Sbjct: 592 KIERYREMYKLKSTYLE--SLEECIDEDGRIRSTFK-QNVTATGRLSSTEPNLQNLP--I 646

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           R+ E                          +R    A +GK L+ AD + IE RVLA +A
Sbjct: 647 RTEE-----------------------GRKIRKAFKADDGKVLIDADYSQIELRVLAHLA 683

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            ++   +AF    D++  T +  F+    +VTK QR+  K +   + Y
Sbjct: 684 NDKKMQEAFSKDIDIHTKTASEVFSTPIDEVTKLQRSEAKAVNFGIIY 731


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++ V   E   L+ AD + IE R++A ++ E+  ++AF+ GED++ +T A+ FNV   +V
Sbjct: 704 KAFVPRDENYVLLAADYSQIELRIIAALSNEENMIQAFKDGEDIHASTAAKVFNVPLEEV 763

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           T++QR+  K +   + Y  G  AF  +++ T L+ +    L+ T
Sbjct: 764 TREQRSNAKTVNFGIIY--GVSAF-GLSNQTSLSRSESKELIDT 804


>gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
 gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
          Length = 917

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 29/156 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++A+ SDGR+  T     A+ TGR S      QN+P  + +  +               
Sbjct: 632 LLKAVASDGRIHSTFNQTVAA-TGRLSSTDPNLQNIPVRTEAGRQ--------------- 675

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +A EG + L+ AD + IE R++A ++ ++  ++AF TGEDL+   
Sbjct: 676 ----------IRHAFVAGEGYETLMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFV 725

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A++F V   +VT D R   K M   L Y  G  AF
Sbjct: 726 GAKAFGVPIDEVTPDMRRRVKAMSYGLAY--GLSAF 759


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R + E  QI        +S+P+ +Q I   +RS   ASEG   V+AD + IE R+ A
Sbjct: 307 RNGRVYPEFRQIGAVTGRMSSSNPN-VQNIPRDMRSLFRASEGNLFVIADFSQIELRIAA 365

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
               ++  L+AF  G DL+  T +        ++TK++R + K M   L Y   A+   +
Sbjct: 366 EYVQDENMLRAFREGRDLHRYTASLVLEKPEEEITKEERQLAKAMNFGLIYGISARGLSE 425

Query: 451 MA-STTGLNLNTFA 463
            A S+ G+ L   A
Sbjct: 426 YARSSYGVELEIEA 439


>gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179]
 gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
          Length = 925

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVA 379
           PQ + P   R H    Q +T      +SDP+   I +       +R   IA +G K+V A
Sbjct: 643 PQMIDPNTGRVHTSYHQAVTITGRLSSSDPNLQNIPTRSEEGRKIRQAFIAPQGFKVVAA 702

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++ +     AF  G D++ +T A  F+V   QVT  QR   K +   L
Sbjct: 703 DYSQIELRIMAHLSADAGLAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAINFGL 762

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 763 IY--GMSAF 769


>gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 514

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 8/129 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380
           P  +   SR H   +QI T      +S+P+    P++      +R   +A EGK L+  D
Sbjct: 231 PNLVDSNSRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSID 290

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELAL 439
            + +E RVL  M+ ++  +KA+   +DL+  T  R FN++ +  VT++QR I K++  ++
Sbjct: 291 YSQVELRVLTSMSKDENLIKAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSI 350

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 351 IY--GKTAF 357


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 927

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR    H   +Q +T      +SDP+ LQ I         +R C I  EG +   AD + 
Sbjct: 649 PRTGHIHTSFNQAVTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RV+A ++ +   L AF  G D++  T A+ +N   ++VT+D+R   K     + Y
Sbjct: 708 IELRVMAHLSQDANMLDAFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGIIY 765


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +       ++DP+ LQ I         VR   +A  G+ +   D + 
Sbjct: 643 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G++  L+AF  G D++  T A  F VA  QVT +QR   KV+   L Y
Sbjct: 702 IELRIMAHISGDEALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIY 759


>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 927

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 648 PTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKIMAIDYSQ 706

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L+AF+ G+D++  T A    V  +QVT +QR   K +   L Y  
Sbjct: 707 IELRIMAHLSGDRALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNFGLIY-- 764

Query: 444 GAKAF 448
           G  AF
Sbjct: 765 GMSAF 769


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +       +SDP+ LQ I         +R   IA  G  +V AD + IE 
Sbjct: 632 GRVHTSYSQAVAVTGRLASSDPN-LQNIPIRSAEGRRIREAFIAPSGSCIVAADYSQIEL 690

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G+   L+AF   ED++  T A  F   P  VT +QR   KV+   L Y  G  
Sbjct: 691 RIMAHLSGDAGLLQAFAKNEDVHRATAAEIFMTTPVDVTTEQRRYAKVINFGLIY--GMS 748

Query: 447 AF 448
           AF
Sbjct: 749 AF 750


>gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 677

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 376 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 434

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 435 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 494

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QV+ +QR   K +   L Y  G  AF
Sbjct: 495 DQVSSEQRRRAKAVNFGLIY--GMSAF 519


>gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
 gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
          Length = 843

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    AS G+ LVVAD + IE R+LA M+ E   ++AF+ GED++  T A  F+V P  
Sbjct: 600 IRDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPES 659

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K++   + Y
Sbjct: 660 VTPELRRRAKMVNFGILY 677


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q +T      +SDP+ LQ I         +R+  IA  G  L+ AD + 
Sbjct: 633 PYTGRVHTSYNQAVTLTGRLSSSDPN-LQNIPIRTEEGRAIRTAFIAPAGWSLLAADYSQ 691

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA M       +AF  G D++  T A  F V  AQVT + R + K +   L Y
Sbjct: 692 IELRVLAHMGNVSRLKEAFHAGLDIHAATAAELFGVPLAQVTGEHRRMAKTINFGLVY 749


>gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 883

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q I       +++P+    P+++ I   +R   IA +G  LV +D + I
Sbjct: 605 PNTERIHSSFNQTIAATGRISSTEPNLQNIPVRLEIGRNLRKAFIARQGCVLVDSDYSQI 664

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ E+  ++AF    D++  T +  F V  ++VTK+QR   K +   + Y  G
Sbjct: 665 ELRVLAHISDEEALIQAFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVY--G 722

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
              F  +++  G+        +KT       +  +N  ++MQ+
Sbjct: 723 ISDF-GLSNNLGITKKKAGQYIKTY-----LDRYKNIEKYMQD 759


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +       ++DP+ LQ I         VR   +A  G+ +   D + 
Sbjct: 643 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G++  L+AF  G D++  T A  F VA  QVT +QR   KV+   L Y
Sbjct: 702 IELRIMAHISGDEALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIY 759


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAG 383
           P   + H    Q +T+     +SDP+    P+++     +R   I    + L++ AD + 
Sbjct: 601 PETGKLHTTFHQTVTNTGRLSSSDPNLQNIPIRLEAGRLIRKVFIPGRPENLLLTADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA ++G+   +KAF+ GED++  T A  F V P +VT++ R   K +   + Y
Sbjct: 661 IELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVY 718


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206
           F E       ++  +F+ L P  S E+ LW   +           +  RG  +DV L   
Sbjct: 400 FTEDAAERALLSERLFQNLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L+  ++ E  +L+ E+  L  G   +    ++L+  LF E GL       T   R   + 
Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           K+ T Q        + A R A    + +VE +         LQ+   S+         P 
Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381
              PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+ AD 
Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+D++  T A  F + PA V    R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671


>gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 898

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGI 384
           P   R H    Q        IT++PD    P++      VR   +   G KL+ AD + I
Sbjct: 618 PDSGRIHATFQQTAGVSGRLITTEPDLQRTPIKTPEGKRVRQAFVTRPGYKLISADWSQI 677

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV--APAQVTKDQRAIGKVMELALGYQ 442
           E R+LA  + +   ++AF  G D++  T A+ F V   P +V+++QR +GK++  A  Y 
Sbjct: 678 ELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEVGGGPEKVSREQRGVGKLVNFATIYG 737

Query: 443 GGAKAFQKM 451
            GA A  ++
Sbjct: 738 QGATALGQI 746


>gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2]
          Length = 892

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R  V+  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGVVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 836

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 365 RSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R C++   EG   V AD + IE RVLA ++GE+  ++AFE G D++  T +  + V P  
Sbjct: 600 RRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVHARTASWIYGVDPQA 659

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF-QKMA 452
           V+ +QR   KV+   L Y  GA    Q+M 
Sbjct: 660 VSPEQRRFAKVVNFGLLYGMGAHGLAQRMG 689


>gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
 gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 895

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 37/230 (16%)

Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           YG++     L   ++L+  LF E G+     T+T       + + L  +    F   M  
Sbjct: 539 YGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLE 598

Query: 284 SRSAV-LK--LNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            R A  LK  ++ LV+++  DGR+  TL Q + A  TGR S      QN+P   R+ E  
Sbjct: 599 HRDATRLKTTVDGLVKSIADDGRIHTTLNQTIAA--TGRLSSTEPNLQNIP--IRTEE-- 652

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                                   +R   +  EG  +L+ AD + IE R++A ++G++  
Sbjct: 653 ---------------------GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGL 691

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           ++AF TGEDL+    +R+F V   +V  + R   K M   L Y  G  AF
Sbjct: 692 IEAFRTGEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAY--GLSAF 739


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A++G ++V AD + 
Sbjct: 649 PISGRVHTSYHQAVTATGRLSSADPN-LQNIPVRNDEGRRIRQAFVAAKGHRIVAADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  GED++  T +  F VA  +V+ +QR   K +   L Y  
Sbjct: 708 IELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALDKVSGEQRRSAKAINFGLIY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10]
          Length = 986

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 136/340 (40%), Gaps = 51/340 (15%)

Query: 173 KRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           K+LE L  KE            L++++Q     G CV     H   + + V+  +L+QE+
Sbjct: 575 KKLEELDMKELFYTIEMPLIFSLFHMEQA----GICVKREELHDYGEKLRVQIERLEQEI 630

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNR 280
              T G   +    ++L   LF +  L     T+T         +KL P+   +Q   + 
Sbjct: 631 YGET-GEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDY 689

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            + ++      + L   +  DGR+ GT  Q + A  TGR S      QN+P       E 
Sbjct: 690 RQLTKLKSTYADGLAGYIREDGRIHGTFNQTITA--TGRLSSTEPNLQNIPVRMELGRE- 746

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +  EG   V AD + IE RVLA M+G++  +
Sbjct: 747 ------------------------IRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLI 782

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A+   ED++  T +  F+V   +VT  QR   K +   + Y  G  AF     +  L++
Sbjct: 783 EAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVY--GISAF---GLSEDLSI 837

Query: 460 NTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHAIEDLF 498
                L   N   E + D + F  R ++E   +  +  +F
Sbjct: 838 TRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVTTMF 877


>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
 gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
          Length = 901

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 15/167 (8%)

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------ 360
           TL  L ++ T R      P Q  P   R H    Q +T      +SDP+ LQ I      
Sbjct: 605 TLSKLKSTYTDR-----LPLQVNPHTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRTAE 658

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA  G +LV AD + IE R++A ++ ++  L AFE  ED++  T    F   
Sbjct: 659 GRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEVFRTP 718

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             +VT +QR   K +   L Y   A     +    G+N     H ++
Sbjct: 719 LEEVTPEQRRSAKAINFGLIYGMSAHG---LGRQLGINRTAAQHYIE 762


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 7/119 (5%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382
           LPR  R H    Q +       ++DP+ LQ I         VR   +A  G  +  AD +
Sbjct: 647 LPRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTAEGRRVREAFVAPPGCVIASADYS 705

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R++A ++G+   L AF  G D++  T A  F VA  QVT +QR   KV+   L Y
Sbjct: 706 QIELRIMAHISGDHALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIY 764


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +       ++DP+ LQ I         VR   +A  G  +  AD + 
Sbjct: 659 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFVAPAGSVIASADYSQ 717

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L+AF  G D++  T A  F   P QV+ +QR   KV+   L Y  
Sbjct: 718 IELRIMAHISGDESLLRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIY-- 775

Query: 444 GAKAFQKMASTTGLNLNTFAHLVK 467
           G  +F  +A   G+     A  ++
Sbjct: 776 GMSSF-GLAKNLGIETKAAASYIE 798


>gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 894

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 37/230 (16%)

Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           YG++     L   ++L+  LF E G+     T+T       + + L  +    F   M  
Sbjct: 538 YGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLE 597

Query: 284 SRSAV-LK--LNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            R A  LK  ++ LV+++  DGR+  TL Q + A  TGR S      QN+P   R+ E  
Sbjct: 598 HRDATRLKTTVDGLVKSIADDGRIHTTLNQTIAA--TGRLSSTEPNLQNIP--IRTEE-- 651

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                                   +R   +  EG  +L+ AD + IE R++A ++G++  
Sbjct: 652 ---------------------GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGL 690

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           ++AF TGEDL+    +R+F V   +V  + R   K M   L Y  G  AF
Sbjct: 691 IEAFRTGEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAY--GLSAF 738


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 10/136 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P+  R H + +Q +T      +S+P+    P++   S  +R   I  EG  LV AD + I
Sbjct: 674 PKTGRVHTDFNQTVTTTGRLSSSNPNLQNIPIKTEFSRQIRQAFIPEEGWLLVSADYSQI 733

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +  E   ++A++  +D++  T    F+   A +T ++R+IGK +   + Y  G
Sbjct: 734 ELRILAHLTQEPLLVEAYQNYQDVHRVTAQLLFD--KANITSEERSIGKTINFGVIYGMG 791

Query: 445 AKAFQKMASTTGLNLN 460
           A   Q+ A   GL++ 
Sbjct: 792 A---QRFARAFGLSVQ 804


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 170/412 (41%), Gaps = 59/412 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ +++  V  VAHN+ F+  VL           R+          GLP A       L
Sbjct: 406 LKDLMQDERVLKVAHNAKFDLEVLT----------RY----------GLPEAHPLYDTML 445

Query: 117 KLSSQKMEEG---KELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTV 167
                  ++G    EL     + +T    Y    P    A R      L  +Y   D  V
Sbjct: 446 AHYLIDADQGHSLDELAGGLLRYDT--IRYKDLAPQESFALRTDVDPKLLCDYASEDAYV 503

Query: 168 TREIF----KRLEP-----LSSKEQELWYLDQTINDRGYCVDV-ALAHTLNQIVDVERTK 217
           T  ++    K+L P     L+  E  L Y+   +  RG  +D+ AL  +  ++++    +
Sbjct: 504 TLRLYHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLE-SVLR 562

Query: 218 LDQELESLTY-GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP-QAIQ 275
           L++E++S +  GL       +++   LF E  + +E   +T     +++ + L P +++ 
Sbjct: 563 LEKEIQSYSSRGLNLKVNSPKQIGELLFDELKI-MEKPRKTKTGNYVTNEETLLPLRSLH 621

Query: 276 VFNNRMRASRSAVLKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                +   R A   LNT ++ +      DG+L  +      + TGR S      QN+P 
Sbjct: 622 PVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIPI 680

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE--GKKLVVADLAGIEARVL 389
            S     L +       +  +DP     +S C        E  G  L+ AD + +E RV+
Sbjct: 681 RSDLGRPLRR-------AFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADYSQVELRVM 733

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A ++ +   + +F +G+D++  T A+ F VAP +VT   R+  K     + Y
Sbjct: 734 AHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I         +R   +A EG++++ AD + 
Sbjct: 633 PDTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRRIRQAFVAPEGRRILAADYSQ 691

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L+AF  G D++  T A  F V    VT DQR   K +   L Y  
Sbjct: 692 IELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELNDVTVDQRRKAKAINFGLIY-- 749

Query: 444 GAKAF 448
           G  AF
Sbjct: 750 GMSAF 754


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206
           F E       ++  +F+ L P  S E+ LW   +           +  RG  +DV L   
Sbjct: 400 FTEDAAERALLSERLFQTLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L+  ++ E  +L+ E+  L  G   +    ++L+  LF E GL       T   R   + 
Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLEKVLFDELGL-------TPVGRTEKTG 510

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           K+ T Q        + A R A    + +VE +         LQ+   S+         P 
Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381
              PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+ AD 
Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++G++   + F  G+D++  T A  F + PA V    R   K +   + Y
Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671


>gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129]
 gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae]
          Length = 899

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 40/261 (15%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS----RCLEKLKTWLFLETGLHL 251
           G CVDVA   TL +  D+   ++ +E ES    L           ++L+  LF   GL  
Sbjct: 513 GICVDVA---TLREQRDIFVEQVKEE-ESAARELAGDETLNLSSPKQLQVVLFDTLGLPK 568

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR---SAVLKLNTLVEAMNSDGRLRGTL 308
              T+T         + L  +    F + + A R        L+ L++A+  DGR+  T 
Sbjct: 569 TKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHREFQKMKTTLDGLIKAVGDDGRIHTTF 628

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               AS TGR S      QN+P  + +  +                         +RS  
Sbjct: 629 NQTVAS-TGRLSSTEPNLQNIPVRTPAGRK-------------------------IRSAF 662

Query: 369 IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  +G K L+ AD + IE RV+A ++ +   ++A++TGEDL+    ++ F+V   QVT +
Sbjct: 663 VVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTGEDLHNFVGSKVFDVPVDQVTPE 722

Query: 428 QRAIGKVMELALGYQGGAKAF 448
            R   K M   L Y  G  AF
Sbjct: 723 LRRRVKAMSYGLVY--GLSAF 741


>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
          Length = 931

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 689 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QV+ +QR   K +   L Y  G  AF
Sbjct: 749 DQVSSEQRRRAKAVNFGLIY--GMSAF 773


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 10/156 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G S+         P    P   R H    Q +       ++DP+ LQ I       
Sbjct: 617 LEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTGRLSSNDPN-LQNIPIRNAEG 675

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA  G  +V AD + IE R++A ++ ++  L+AF  GED++  T A  F VA 
Sbjct: 676 RRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGEDIHRATAAEIFGVAR 735

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             V+ +QR   KV+   L Y  G  AF  +A   G+
Sbjct: 736 GDVSSEQRRYAKVINFGLIY--GMSAF-GLAGNLGI 768


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + IE 
Sbjct: 661 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIEL 719

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G++  L+AF+ G+D++  T A    VA  QVT +QR   K +   L Y  G  
Sbjct: 720 RIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIY--GMS 777

Query: 447 AFQKMASTTGLNLNTFAHLVKT 468
           AF  +A   G+      H + T
Sbjct: 778 AF-GLAKQLGIPRGEAQHYMDT 798


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L+++++ DGR+  T     A+ TGR S      QN+P   R+ E             
Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP--IRTEE------------- 654

Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +  EG + L+ AD + IE R++A ++G++  ++AF +G D +
Sbjct: 655 ----------GRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALIEAFNSGHDFH 704

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
             T +  F VA A+VT DQR   K M   L Y  G  AF
Sbjct: 705 AATASSVFEVAVAEVTPDQRRKIKAMNYGLAY--GLSAF 741


>gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411]
 gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411]
          Length = 801

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 6/128 (4%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQI------ISDCVRSCVIASEGKKLVVADLA 382
           + + +R H   +Q +T      +S+P+   +      +   +R  V+A +G KL+ +D +
Sbjct: 523 MDKSNRLHTTFNQTLTSTGRLSSSNPNLQNLPAGDDELHSGIRKSVVAPKGYKLICSDYS 582

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA M+ ++  ++ F+  ED++  T  + F V P+ V    R + K +   + Y 
Sbjct: 583 QIELRVLAQMSKDKTLIEIFKNNEDIHTQTAVKIFGVHPSMVDHHLRRMAKTINFGIIYG 642

Query: 443 GGAKAFQK 450
            G  +  K
Sbjct: 643 MGYVSLSK 650


>gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
 gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
          Length = 1040

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 134/308 (43%), Gaps = 48/308 (15%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV--DVERTKLDQELESLTYGL 229
           ++R+  L   E  L  L + + D G  VD  L    +Q +  +V+RT+     E++   +
Sbjct: 631 YRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEA-AAFEAIGREV 689

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTP----QAIQVFNNRMR 282
             SS   ++L+  LF + GL     T+T   T  + L       P    QA+  F +R  
Sbjct: 690 NLSSP--KQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDR-- 745

Query: 283 ASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340
              S +L++   L + + SDGR+  T     A+ TGR S      QN+P R        +
Sbjct: 746 ---SKLLQVVRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDGARIRE 801

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
             I  +P            +S              L+ AD + IE R++A ++G++  + 
Sbjct: 802 TFIAQMP-----------FVS--------------LMTADYSQIEMRIMAHLSGDEGLIA 836

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++GEDL+ +  A  F VAP  VT  QR   K     L Y  G  AF  +A    ++  
Sbjct: 837 AFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAY--GLSAF-GLAGQLRISQG 893

Query: 461 TFAHLVKT 468
              HL++T
Sbjct: 894 EAKHLMET 901


>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
 gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
          Length = 930

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 629 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 687

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +AS G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 688 RRIRQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             V+ +QR   K +   L Y  G  AF
Sbjct: 748 EDVSSEQRRRAKAVNFGLIY--GMSAF 772


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376
            PP   P   R H   +Q++T      +++P+ LQ I        +  R+ +  +E   L
Sbjct: 580 LPPMINPDTGRLHTSFNQMVTATGRLSSTEPN-LQNIPVRTDEGREIRRAFITENEDWVL 638

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RVLA ++ ++    AF TG+D++  T +  F V P +VT + R   KV+ 
Sbjct: 639 LAADYSQIELRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVIN 698

Query: 437 LALGY 441
             + Y
Sbjct: 699 FGIAY 703


>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
 gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
          Length = 931

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 689 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QV+ +QR   K +   L Y  G  AF
Sbjct: 749 DQVSSEQRRRAKAVNFGLIY--GMSAF 773


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 9/129 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379
           P+ + +  R H    Q +T      ++DP+ LQ I         +R   IA EG KL+ A
Sbjct: 643 PEMIQKTGRIHTSYHQAVTATGRLSSTDPN-LQNIPIRTAEGRRIRQAFIAPEGYKLIAA 701

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+++ ++ +   L+AF   +D++  T A  F VA  +VT +QR   K +   L
Sbjct: 702 DYSQIELRIMSHLSQDPGLLEAFANNKDVHKATAAEVFEVALDEVTGEQRRRAKAINFGL 761

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 762 IY--GMSAF 768


>gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
 gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 170/412 (41%), Gaps = 59/412 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ +++  V  VAHN+ F+  VL           R+          GLP A       L
Sbjct: 406 LKDLMQDERVLKVAHNAKFDLEVLT----------RY----------GLPEAHPLYDTML 445

Query: 117 KLSSQKMEEGK---ELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTV 167
                  ++G    EL     + +T    Y    P    A R      L  +Y   D  V
Sbjct: 446 AHYLIDADQGHSLDELAGGLLRYDT--IRYKDLAPQESFALRTDVDPKLLCDYASEDAYV 503

Query: 168 TREIF----KRLEP-----LSSKEQELWYLDQTINDRGYCVDV-ALAHTLNQIVDVERTK 217
           T  ++    K+L P     L+  E  L Y+   +  RG  +D+ AL  +  ++++    +
Sbjct: 504 TLRLYHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLE-SVLR 562

Query: 218 LDQELESLTY-GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP-QAIQ 275
           L++E++S +  GL       +++   LF E  + +E   +T     +++ + L P +++ 
Sbjct: 563 LEKEIQSYSSRGLNLKVNSPKQIGELLFDELKI-MEKPRKTKTGNYVTNEETLLPLRSLH 621

Query: 276 VFNNRMRASRSAVLKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                +   R A   LNT ++ +      DG+L  +      + TGR S      QN+P 
Sbjct: 622 PVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIPI 680

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE--GKKLVVADLAGIEARVL 389
            S     L +       +  +DP     +S C        E  G  L+ AD + +E RV+
Sbjct: 681 RSDLGRPLRR-------AFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADYSQVELRVM 733

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A ++ +   + +F +G+D++  T A+ F VAP +VT   R+  K     + Y
Sbjct: 734 AHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785


>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
 gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 628 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNDEG 686

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA  G K++  D + IE R++A ++G+Q  L AF+ G+D++  T A       
Sbjct: 687 RRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTTI 746

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QV+ +QR   K +   L Y  G  AF
Sbjct: 747 DQVSSEQRRRAKAVNFGLIY--GMSAF 771


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      ++DP+ LQ I         +R   IA   K++V 
Sbjct: 645 PQMINPITGRVHTSYHQAVTATGRLSSNDPN-LQNIPVRNEEGRRIRQAFIAGADKRIVA 703

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ ++  L AF  GED++  T +  F VA ++V+ +QR   K +   
Sbjct: 704 ADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFG 763

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 764 LIY--GMSAF 771


>gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
          Length = 930

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 629 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 687

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 688 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QV+ +QR   K +   L Y  G  AF
Sbjct: 748 DQVSSEQRRRAKAVNFGLIY--GMSAF 772


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P+ +R H   +Q  T      +SDP+   I     +   +R   +A EG +LVV D + I
Sbjct: 553 PKTNRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWRLVVLDYSQI 612

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K +   + Y
Sbjct: 613 ELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLY 669


>gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
 gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
          Length = 912

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 16/244 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387
           SR H   +QI T      +SDP+    P++      +R   +A EGK L+  D + +E R
Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELR 695

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446
           VL  M+ ++  ++A++  +DL+  T  R FN++ ++ V+++QR I K++  ++ Y  G  
Sbjct: 696 VLTSMSKDENLIEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            F  +A    + +   +  +K     E++    +F R + E   EH     ++ T   R 
Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTSFEREVIEFGEEHG----YVKTLFGR- 805

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K+      S+   + ++  +    T+  G A    K+  V +  + KDK ++ L+L    
Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHD 865

Query: 567 SLVY 570
            L++
Sbjct: 866 ELIF 869


>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 814

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 35/223 (15%)

Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           YG++     L   ++L+  LF E G+     T+T       + + L  +    F   + A
Sbjct: 529 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 588

Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            R      + ++ L++A+ +DGR+  T  Q + A  TGR S      QN+P         
Sbjct: 589 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 637

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                     I +D          +R   +  +G  +L+ AD + IE R++A ++G++  
Sbjct: 638 ----------IRTD------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 681

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 682 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 724


>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 930

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA EG +++ AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++ ++  + AF  G+D++ +T A  F +  AQV+ +QR   K +   L Y  G  +
Sbjct: 716 IMAHLSQDKGLINAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIY--GMSS 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
 gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
          Length = 865

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  +  +G KL+VAD + IE R+LA M+G++  ++AF  GED++  T A    V P  
Sbjct: 626 IRAAFVPRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLM 685

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT + R   K +   + Y  G  AF  +A+  G+ 
Sbjct: 686 VTPEARRDAKAVNFGIVY--GISAF-GLAAQLGIG 717


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-- 361
           ++  L F G S+         P Q      R H +  Q +       +++P+ LQ I   
Sbjct: 643 IQQVLDFRGLSKLKSTYVDALPLQVDESTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIR 701

Query: 362 -----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                   ++ V   E   L+ AD + IE R++A ++ E+  ++AF+ GED++ +T ++ 
Sbjct: 702 TERGRQVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKNGEDIHASTASKV 761

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           FNV   +VT++QR+  K +   + Y  G  AF  +++ T L+ +    L++T  A
Sbjct: 762 FNVPITEVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLSRSEAKELIETYYA 813


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G S+         P    P   R H    Q +       ++DP+ LQ I       
Sbjct: 611 LEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTGRLSSNDPN-LQNIPIRNAEG 669

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA  G  +V AD + IE R++A ++ ++  L+AF  GED++  T A  F VA 
Sbjct: 670 RRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGEDIHRATAAEIFGVAR 729

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             V+ +QR   KV+   L Y  G  AF
Sbjct: 730 GDVSSEQRRYAKVINFGLIY--GMSAF 754


>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 896

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------ 360
           +L  L ++ T +  G V P     +  R H    Q +       +SDP+ LQ I      
Sbjct: 600 SLSKLKSTYTDKLPGMVNP-----QTGRVHTSYHQAVAATGRLSSSDPN-LQNIPIRTEE 653

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA +G ++V AD + IE R++A ++ +   L AF+ G+D++  T A  F V+
Sbjct: 654 GRRIRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSLLTAFKEGQDVHRATAAEVFEVS 713

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAF 448
             +V+ DQR   K +   L Y  G  AF
Sbjct: 714 LDEVSGDQRRKAKAINFGLIY--GMSAF 739


>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
 gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
          Length = 875

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 26/160 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ +V+ +  DG++  T Q    ++TGR S      QN+P   R+ E             
Sbjct: 589 IDGMVDLIKKDGKIHTTFQ-QTIAQTGRISSTNPNLQNIP--IRTEE------------- 632

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   + SEG  L+ AD + IE RVLA +A ++  L AF+ G D++ 
Sbjct: 633 ----------GRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHR 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            T +  F V   +VT  QR+  K +   + Y  G  +  K
Sbjct: 683 KTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSLSK 722


>gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1]
 gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1]
          Length = 1040

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 134/308 (43%), Gaps = 48/308 (15%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV--DVERTKLDQELESLTYGL 229
           ++R+  L   E  L  L + + D G  VD  L    +Q +  +V+RT+     E++   +
Sbjct: 631 YRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEA-AAFEAIGREV 689

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTP----QAIQVFNNRMR 282
             SS   ++L+  LF + GL     T+T   T  + L       P    QA+  F +R  
Sbjct: 690 NLSSP--KQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDR-- 745

Query: 283 ASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340
              S +L++   L + + SDGR+  T     A+ TGR S      QN+P R        +
Sbjct: 746 ---SKLLQVVRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDGARIRE 801

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
             I  +P            +S              L+ AD + IE R++A ++G++  + 
Sbjct: 802 TFIAQMP-----------FVS--------------LMTADYSQIEMRIMAHLSGDEGLIA 836

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++GEDL+ +  A  F VAP  VT  QR   K     L Y  G  AF  +A    ++  
Sbjct: 837 AFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAY--GLSAF-GLAGQLRISQG 893

Query: 461 TFAHLVKT 468
              HL++T
Sbjct: 894 EAKHLMET 901


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   IA   K++V AD + 
Sbjct: 649 PVTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFIAGPDKRIVAADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  GED++  T +  F VA ++V+ +QR   K +   L Y  
Sbjct: 708 IELRIMAHLSQDKGLLAAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987]
 gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A]
 gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85]
 gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
 gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
          Length = 904

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 35/223 (15%)

Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           YG++     L   ++L+  LF E G+     T+T       + + L  +    F   + A
Sbjct: 546 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 605

Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            R      + ++ L++A+ +DGR+  T  Q + A  TGR S      QN+P         
Sbjct: 606 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 654

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                     I +D          +R   +  +G  +L+ AD + IE R++A ++G++  
Sbjct: 655 ----------IRTD------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 698

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 699 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 741


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EGKK++ AD + IE R++A ++ ++  L AF  G+D++  T A  F V  ++
Sbjct: 705 IRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVDFSE 764

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 765 VTTEQRRRAKAVNFGLIY--GMSAF 787


>gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 180

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  Q
Sbjct: 11  IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 70

Query: 424 VTKDQRAIGKVMELALGY 441
           VT +QR   K +   L Y
Sbjct: 71  VTSEQRRSAKAINFGLIY 88


>gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
          Length = 897

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 135/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++ TKL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA +
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LKAF    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11]
          Length = 912

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 16/244 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387
           SR H   +QI T      +SDP+    P++      +R   +A EGK L+  D + +E R
Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELR 695

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446
           VL  M+ ++  ++A++  +DL+  T  R FN++ ++ V+++QR I K++  ++ Y  G  
Sbjct: 696 VLTSMSKDENLIEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            F  +A    + +   +  +K     E++    +F R + E   EH     ++ T   R 
Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTSFEREVIEFGEEHG----YVKTLFGR- 805

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K+      S+   + ++  +    T+  G A    K+  V +  + KDK ++ L+L    
Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHD 865

Query: 567 SLVY 570
            L++
Sbjct: 866 ELIF 869


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EGKK++ AD + IE R++A ++ ++  L AF  G+D++  T A  F+V   +
Sbjct: 677 IRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGLLTAFAAGKDIHRATAAEVFDVDFDE 736

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 737 VTTEQRRRAKAVNFGLIY--GMSAF 759


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 4/106 (3%)

Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           VR   I  S+   L+ AD + IE R++A ++ E+  +KAF+ GED++ +T ++ FNV   
Sbjct: 701 VRKAFIPRSDDYVLLAADYSQIELRIIAALSEEETMIKAFKDGEDIHASTASQVFNVPLE 760

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +VT++QR+  K +   + Y  G  AF  +++ T L+ +    L+ T
Sbjct: 761 EVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTSLSRSESKELIDT 803


>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
 gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
          Length = 922

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379
           PQ +    R H    Q +T      +SDP+ LQ I         +R   IA EG KL+  
Sbjct: 639 PQLVKPSGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRTAEGRRIRQAFIAPEGYKLLAI 697

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++ ++  L+AF  G+D++  T A  F V    VT +QR   K +   L
Sbjct: 698 DYSQIELRIMAHLSQDKGLLEAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNFGL 757

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 758 IY--GMSAF 764


>gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1]
 gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1]
          Length = 912

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 16/244 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387
           SR H   +QI T      +SDP+    P++      +R   +A EGK L+  D + +E R
Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELR 695

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446
           VL  M+ ++  ++A++  +DL+  T  R FN++ ++ V+++QR I K++  ++ Y  G  
Sbjct: 696 VLTSMSKDENLIEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            F  +A    + +   +  +K     E++    +F R + E   EH     ++ T   R 
Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTSFEREVIEFGEEHG----YVKTLFGR- 805

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K+      S+   + ++  +    T+  G A    K+  V +  + KDK ++ L+L    
Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHD 865

Query: 567 SLVY 570
            L++
Sbjct: 866 ELIF 869


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLA 382
           F P   P   R H    QI          +P+  QI  D   R+C  A  G+KL++AD +
Sbjct: 308 FTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNIQQIPRDSEFRACFAAPPGRKLILADYS 367

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RV A ++G+   + A++ GEDL++ T +   +    +++  +R   K +   L + 
Sbjct: 368 QIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFG 427

Query: 443 GGAKAFQKMA 452
            GA   Q+ A
Sbjct: 428 MGAPGLQQYA 437


>gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
 gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
          Length = 909

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q I       ++DP+   I     +   +R   +A +G KLV AD + +
Sbjct: 631 PLDGRIHSSFNQAIATTGRISSTDPNMQNIPVRTDLGRQLRRVFVAGQGSKLVDADYSQV 690

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA M+G++  ++AF+ G D++  T ++ F V   +V+ + R+  K +   + Y
Sbjct: 691 ELRVLADMSGDEDMIEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGIIY 747


>gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
 gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
 gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503]
 gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A]
 gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85]
 gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
 gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
 gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
 gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
 gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
 gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv]
 gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
 gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
 gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
 gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
 gi|740010|prf||2004291B DNA polymerase I
          Length = 904

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 35/223 (15%)

Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           YG++     L   ++L+  LF E G+     T+T       + + L  +    F   + A
Sbjct: 546 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 605

Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            R      + ++ L++A+ +DGR+  T  Q + A  TGR S      QN+P         
Sbjct: 606 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 654

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                     I +D          +R   +  +G  +L+ AD + IE R++A ++G++  
Sbjct: 655 ----------IRTD------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 698

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 699 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 741


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 135/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++ TKL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA +
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LKAF    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
 gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
          Length = 903

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 35/223 (15%)

Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           YG++     L   ++L+  LF E G+     T+T       + + L  +    F   + A
Sbjct: 545 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 604

Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            R      + ++ L++A+ +DGR+  T  Q + A  TGR S      QN+P         
Sbjct: 605 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 653

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                     I +D          +R   +  +G  +L+ AD + IE R++A ++G++  
Sbjct: 654 ----------IRTD------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 697

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 698 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 740


>gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 882

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 34/211 (16%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+  LF E G+     T+T       + + L  +    F   M   R A  KL T VE
Sbjct: 537 KQLQVVLFDELGMPKTKRTKTGYTTDAEALQGLFEKTEHPFLQHMLEHRDAT-KLRTTVE 595

Query: 297 AM----NSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            +      DGR+  TL Q + A  TGR S      QN+P   R+ E              
Sbjct: 596 GLIKSVADDGRIHTTLLQTIAA--TGRLSSTEPNLQNIP--VRTEE-------------- 637

Query: 352 SDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       +R   +  EG  +L+ AD + IE R++A ++ ++  ++AF +GEDL+ 
Sbjct: 638 ---------GRRIRDAFVVGEGFTELMTADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHT 688

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
              +R+F++ P ++T + R   K M   L Y
Sbjct: 689 FVASRAFSMPPEEITPELRYRVKAMSYGLAY 719


>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
 gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
          Length = 933

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 21/155 (13%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L +++  DGR+  T Q + A+ TGR S      QN+P  +     + +     P +   D
Sbjct: 642 LRKSVADDGRIHTTYQQMIAA-TGRLSSTDPNLQNIPIRTEEGRRIREAFVVGPDAGAGD 700

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                   +C            L+ AD + IE R++A ++G++  + AF +GEDL+    
Sbjct: 701 G------YEC------------LLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVG 742

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +R F VAP  VT + RA  K M   L Y  G  AF
Sbjct: 743 SRVFGVAPVDVTPEMRAKIKAMSYGLAY--GLSAF 775


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 631 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 689

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA  G K++  D + IE R++A ++G++  L AF+ G+D++  T A    V  
Sbjct: 690 RRIRQAFIAPHGWKILAVDYSQIELRIMAHLSGDKALLDAFKNGKDIHAATAAEIIGVDI 749

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QVT +QR   K +   L Y  G  AF
Sbjct: 750 DQVTSEQRRRAKAINFGLIY--GMSAF 774


>gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 914

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 16/251 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380
           P  +   SR H   +QI T      +SDP+    P++      +R   IA EGK L+  D
Sbjct: 631 PLLVDENSRIHTSFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFIAGEGKVLMSID 690

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELAL 439
            + +E RVL  M+ ++  ++A+   +DL+  T  R FN+A ++ V+++QR I K++  ++
Sbjct: 691 YSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLADSETVSREQRTIAKIINFSI 750

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G   F  +A    + +   +  +K     E++     F + + E   EH     ++
Sbjct: 751 IY--GKTPFG-LAKELKIPVKDASEYIK--KYFEQYPRVTTFEKEVIEFGEEHG----YV 801

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T   R K+      S+   + ++  +    T+  G A    K+  V +  + KDK ++ 
Sbjct: 802 KTLFGR-KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIA 860

Query: 560 LMLPSGRSLVY 570
           L+L     L++
Sbjct: 861 LLLQVHDELIF 871


>gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 607

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 137/360 (38%), Gaps = 96/360 (26%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR +      QN+PRP                    D D  +I     R+  +   G
Sbjct: 317 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 351

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           K L   D +G E R++AW +G++  ++ F TG D++  T +     + A++ K +R   K
Sbjct: 352 KILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 411

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                + Y G                                               EHA
Sbjct: 412 AGNFGISYGG----------------------------------------------TEHA 425

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551
           ++  F      + K   R+     +++ N +  A+++  E  + I+  AR++  V  +Y 
Sbjct: 426 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 478

Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  + +LP   S   RD G+  R   NT  +    +     K+   I +++ +   
Sbjct: 479 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 529

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667
            EG+++   A  D++  +HDEI+ E  D  E   ++   +  +M   P     +P++AEG
Sbjct: 530 -EGVLSHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 586


>gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9]
          Length = 960

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 56/268 (20%)

Query: 201 VALAHTLNQIVDVERTKLDQELESLT-------------YGLVSSSRCLEKLKTWLFLET 247
           VAL H  +    V+R +LD+ LE  T              G   + +  ++L   LF E 
Sbjct: 559 VALFHMEHTGASVDRARLDELLEMFTDESNRMEQICYEAAGHEVNLQSPKQLGVVLFEEM 618

Query: 248 GLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLK----------LNTLV 295
           GL   + T+ T +   S+N K   T  A     +R      A+L+          + TL+
Sbjct: 619 GL---NPTKKTKRGSYSTNAKALTTLYATSEEGSRPNEFLGALLRHREVNKLRQIVQTLI 675

Query: 296 EAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           +A+N  DGR+  T     A+ TGR S      QN+P  + +  +                
Sbjct: 676 DAINPRDGRIHTTFTQTVAA-TGRLSSVDPNLQNIPNRNATGRD---------------- 718

Query: 355 DPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +RS  +  EG   L+ AD + +E R++A ++G++  +KAF++G D +    
Sbjct: 719 ---------IRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADFHRYVA 769

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +  + +   +VT DQR   K M   L Y
Sbjct: 770 SMVYGIPVDEVTPDQRNHVKAMSYGLAY 797


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
          Length = 930

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G K+V AD + IE R++A ++ ++  L AF  G+D++  T A  F V   +
Sbjct: 691 IRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGVPLDE 750

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT DQR   K +   L Y  G  AF
Sbjct: 751 VTSDQRRSAKAINFGLIY--GMSAF 773


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G K+V AD + IE R++A ++ ++  L AF TG+D++  T +  F+V   +
Sbjct: 698 IRQAFIAQPGYKIVAADYSQIELRIMAHLSQDKGLLDAFSTGKDIHKATASEVFSVPLDE 757

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 758 VTTEQRRSAKAINFGLIY--GMSAF 780


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           +V AD + IE RVLA M+ ++  L AFE   D++  T ++ FNV+   VT+D R IGK++
Sbjct: 666 IVGADYSQIELRVLAHMSEDEKLLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMI 725

Query: 436 ELALGYQGGAKAFQKMASTTGLNLN 460
             A+ Y  G   +  ++   GLN+N
Sbjct: 726 NFAIIY--GISPYG-LSRRIGLNVN 747


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNDEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA  G K++  D + IE R++A ++G++  L AF+ G+D++  T A    V  
Sbjct: 689 RRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIIGVDI 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QV+ +QR   K +   L Y  G  AF
Sbjct: 749 EQVSAEQRRRAKAVNFGLIY--GMSAF 773


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G +++ AD + 
Sbjct: 653 PISGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +Q  L AF  G+D++  T A  F +   +VT DQR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDQGLLTAFAAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G  +V AD + IE R++A ++G++  L+AF  GED++  T    F V    
Sbjct: 699 IREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREA 758

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           V+ +QR   KV+   L Y  G  AF  +A   G+      H +
Sbjct: 759 VSSEQRRYAKVINFGLIY--GMSAF-GLAGNLGIEREAAKHYI 798


>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
 gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
          Length = 908

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 3/98 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   +A +G KL+ AD + +E R++A ++ ++  LKAF+ G D++ +T +  F V  ++
Sbjct: 669 VRQAFVAEDGFKLMSADYSQVELRLMAHISNDEGMLKAFKEGADIHRSTASEVFGVPLSE 728

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           V   QR   K +   L Y  GA A   +A+  G++  T
Sbjct: 729 VDDSQRRAAKAINFGLIYGMGAFA---LANNLGISRET 763


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       +SDP+ LQ I         +R   IA  G  ++ AD + 
Sbjct: 632 PATGRVHTSYSQAVAITGRLASSDPN-LQNIPVRTAEGRRIREAFIAPPGASIISADYSQ 690

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  GED++  T A  F V   +V+ +QR   KV+   L Y  
Sbjct: 691 IELRIMAHLSQDEGLLSAFAKGEDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIY-- 748

Query: 444 GAKAF 448
           G  AF
Sbjct: 749 GMSAF 753


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      +SDP+ LQ I       
Sbjct: 621 LEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNAEG 679

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA  G K++  D + IE R++A ++G++  L+AF+ G+D++  T A    +  
Sbjct: 680 RRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPI 739

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             VT +QR   K +   L Y  G  AF  +A   G+  N
Sbjct: 740 ESVTTEQRRRAKAINFGLIY--GMSAF-GLAKQLGMGRN 775


>gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
 gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
          Length = 808

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 136/360 (37%), Gaps = 96/360 (26%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR +      QN+PRP                    D D  +I     R+  +   G
Sbjct: 518 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 552

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           K L   D +G E R++AW +G++  ++ F TG D++  T +     + A++ K +R   K
Sbjct: 553 KILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 612

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                + Y G                                               EHA
Sbjct: 613 AGNFGISYGG----------------------------------------------TEHA 626

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551
           ++  F      + K   R+     +++ N +  A+++  E  + I+  AR++  V  +Y 
Sbjct: 627 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 679

Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  + +LP   S   RD G+  R   NT  +    +     K+   I +++ +   
Sbjct: 680 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 730

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667
            EG++    A  D++  +HDEI+ E  D  E   ++   +  +M   P     +P++AEG
Sbjct: 731 -EGVLAHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 787


>gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 911

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   I +  K  +  D + IE RVLA M+ E   +KAF    D+++      FN++  Q
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQDADIHLQAAKLIFNLSDDQ 720

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +T +QR I KV    + Y  G   F  +A+   +N+N    ++K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLANDLNMNVNQAKQMIK 761


>gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 7/127 (5%)

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381
           Q+ P   R H    Q I       ++DP+   I     +   +R   IA +G+ ++ AD 
Sbjct: 644 QSDPATQRVHTSYHQAIAATGRLSSTDPNLQNIPIRGEVGRQIRQAFIAPKGRIILAADY 703

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R++A  + ++  LKAF  G D++  T A    +A   VT DQR   K +   L Y
Sbjct: 704 SQIELRLMAHFSQDEALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAINFGLLY 763

Query: 442 QGGAKAF 448
             G  AF
Sbjct: 764 --GMSAF 768


>gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6]
 gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6]
          Length = 628

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384
           P   R H +  QI +      +  P+  QI      +  +R     + GK+ V ADL+ I
Sbjct: 332 PLDGRVHPQYFQIPSSTGRISSRHPNAQQIPRRGDDAPAIRRLFRPAAGKRYVKADLSNI 391

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++   +AF  G DL+  T +R       +VT  QR   K M   L Y G 
Sbjct: 392 ELRIMARISGDEAMQEAFIKGIDLHRLTASRISGTPFEEVTDSQRQAAKAMNFLLIYGGS 451

Query: 445 AKAFQ 449
           AK+ Q
Sbjct: 452 AKSLQ 456


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG+K++ AD + IE R++A ++ ++  L AF  G+D++  T A  F+V  ++
Sbjct: 690 IRHAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSE 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 750 VTSEQRRRAKAVNFGLIY--GMSAF 772


>gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 889

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  +G + L+ AD + IE R++A ++G++  ++AF TGEDL+    AR F V P 
Sbjct: 648 IREVFVVGKGYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPE 707

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
            VT + R+  K M   L Y  G  AF
Sbjct: 708 DVTAEMRSKVKAMSYGLAY--GLSAF 731


>gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 932

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 653 PTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L+AF+ G+D++  T A    ++  QVT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
 gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
          Length = 808

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 136/360 (37%), Gaps = 96/360 (26%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR +      QN+PRP                    D D  +I     R+  +   G
Sbjct: 518 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 552

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           K L   D +G E R++AW +G++  ++ F TG D++  T +     + A++ K +R   K
Sbjct: 553 KILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 612

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                + Y G                                               EHA
Sbjct: 613 AGNFGISYGG----------------------------------------------TEHA 626

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551
           ++  F      + K   R+     +++ N +  A+++  E  + I+  AR++  V  +Y 
Sbjct: 627 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 679

Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  + +LP   S   RD G+  R   NT  +    +     K+   I +++ +   
Sbjct: 680 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 730

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667
            EG++    A  D++  +HDEI+ E  D  E   ++   +  +M   P     +P++AEG
Sbjct: 731 -EGVLAHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 787


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q+ T      ++DP+ LQ I         +R   +  EG  L+ AD + 
Sbjct: 651 PVSGRVHTHYGQVQTATGRLSSNDPN-LQNIPVRSAQGREIRKAFVPREGWTLLAADYSQ 709

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA +  ++  L AF  G D++  T A+ F V    V++DQR+  K++   + Y  
Sbjct: 710 IELRILAALTADEGLLTAFREGRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPY-- 767

Query: 444 GAKAF 448
           G  AF
Sbjct: 768 GISAF 772


>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
 gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
          Length = 930

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   IA E   +V AD + IE R++A ++G+   ++AF+ GED++  T A  F + P  
Sbjct: 689 VRRAFIAPENSVIVSADYSQIELRIMAHLSGDATLIEAFKNGEDVHRRTAAEVFGMQPEN 748

Query: 424 VTKDQRAIGKVMELALGY 441
           +T +QR   K +   L Y
Sbjct: 749 ITPEQRRYAKTINFGLIY 766


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H + +Q IT      +S+P+   I      S  +R   +  EG +LV AD + I
Sbjct: 626 PNTGRVHTDFNQAITTTGRLSSSNPNLQNIPTRTAFSRQIRQAFLPKEGWQLVAADYSQI 685

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E   +K +   ED++  T    F+    ++T ++R + KV+   + Y  G
Sbjct: 686 ELRILAHLSEEPILIKTYREDEDVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMG 745

Query: 445 AKAFQKMASTTGLNLNTF 462
           A  F +      L+  TF
Sbjct: 746 AARFAREMDIHRLDAKTF 763


>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
 gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
          Length = 932

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 653 PTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L+AF+ G+D++  T A    ++  QVT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
 gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
          Length = 920

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      +SDP+ LQ I         VR   +A +G K+V AD + IE 
Sbjct: 645 GRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRKVRQAFVARDGYKIVAADYSQIEL 703

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++ +   LKAF  G+D++  T A  F +   QV+ +QR   K +   L Y  G  
Sbjct: 704 RIMAHLSQDNGLLKAFAEGKDIHQATAAEVFGLELEQVSTEQRRRAKAINFGLIY--GMS 761

Query: 447 AF 448
           AF
Sbjct: 762 AF 763


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%)

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            +R   +A EGKKL+ AD + IE R+LA +A      +AFE G D++  T +  F VA  Q
Sbjct: 804  IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            +T D R   K +   + Y  G  AF  +A   G+                  E+A  F +
Sbjct: 864  MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
               E  P   I D +I T     K++ R+K   V+ L+  +                   
Sbjct: 905  QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                  Y +   NN     PS R+ V       R  +N   +         G   + I +
Sbjct: 940  ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973

Query: 604  AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658
            A++R    E  + A K    ++L VHDE+V E PD DE  A++  +  +M   P+ A
Sbjct: 974  AMTR---MEDALEAKKLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1026


>gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
 gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
          Length = 1041

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA     L+ AD + IE R+LA +  E   ++AF  GED++  T A  F+V   +
Sbjct: 795 IRRAFIADPSYVLLTADYSQIELRILANITNEPRLVEAFNQGEDIHTITAASLFSVPVEE 854

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           VT+DQR + K +  A+ Y  G  A+  ++  TG+     A  +K
Sbjct: 855 VTRDQRRLAKTVVYAVLY--GQSAY-GLSQVTGMRPGDAADFIK 895


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
          Length = 1047

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%)

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            +R   +A EGKKL+ AD + IE R+LA +A      +AFE G D++  T +  F VA  Q
Sbjct: 804  IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            +T D R   K +   + Y  G  AF  +A   G+                  E+A  F +
Sbjct: 864  MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
               E  P   I D +I T     K++ R+K   V+ L+  +                   
Sbjct: 905  QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                  Y +   NN     PS R+ V       R  +N   +         G   + I +
Sbjct: 940  ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973

Query: 604  AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658
            A++R    E  + A K    ++L VHDE+V E PD DE  A++  +  +M   P+ A
Sbjct: 974  AMTR---MEDALEAKKLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1026


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 161/418 (38%), Gaps = 77/418 (18%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110
           LK  LEN ++  V  N  ++ ++L            D  +  ++   V ++ N    ALK
Sbjct: 409 LKPLLENPEIKKVGQNLKYDMSILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALK 468

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +G        K    +E+  +  K  T   +          +  +   Y   D  +T  
Sbjct: 469 YLG-------HKNISFEEIAGKGAKQLTFNQI----------SLEVAAPYAAEDADITLR 511

Query: 171 IFKRLEPLSSKEQELWY--------LDQTIND---RGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P   KE EL          L Q ++D   +G  +D  L    ++    E  +  
Sbjct: 512 LHQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSE----ELARTI 567

Query: 220 QELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272
            ELE   Y +   S  L   ++L+   F + G  +   T     +T + VL       P 
Sbjct: 568 DELEQKAYEIAGESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 627

Query: 273 AIQVFNNRMRASRSAVL--KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
              +  +R  A   +    KL  +V A    GR+  +     A+ TGR S      QN+P
Sbjct: 628 PKIILQHRSLAKLKSTYTDKLPLMVNAQT--GRVHTSYHQANAA-TGRLSSSEPNLQNIP 684

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              R+ E                          +R   IA EG+K++ AD + IE R++A
Sbjct: 685 --IRTEE-----------------------GRRIRHAFIAREGRKVLAADYSQIELRIMA 719

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            ++ ++  L AF  G+D++  T A  F+V   +VT +QR   K +   L Y  G  AF
Sbjct: 720 HLSQDKGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIY--GMSAF 775


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 627 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEAG 685

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 686 RRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 745

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             V+ +QR   K +   L Y  G  AF
Sbjct: 746 EDVSSEQRRRAKAVNFGLIY--GMSAF 770


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q IT      +SDP+ LQ I         +R   +   G  LV AD + 
Sbjct: 613 PETGRIHTSFNQAITATGRLSSSDPN-LQNIPIRTNEGKMIREAFVPEPGHILVAADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA  A ++  +++F   ED++  T A  F   P  +T+D R   K +   + Y  
Sbjct: 672 IELRLLAHFAEDEILIQSFRNDEDIHTRTAAEVFQAFPEFITEDLRRQAKAINFGIMY-- 729

Query: 444 GAKAFQ 449
           G  AF+
Sbjct: 730 GMSAFK 735


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 104/506 (20%), Positives = 191/506 (37%), Gaps = 119/506 (23%)

Query: 158 GEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHT 206
           G YC   V  T ++ ++L             L   EQ L  +   +   G C++ A  H 
Sbjct: 519 GYYCCLQVHATFQLVQKLREELEKFPALHKLLLEVEQPLEAVLAEMEYTGVCINSAYLHE 578

Query: 207 LNQIVDVERTKLDQELESL---TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
           L+Q ++++  KL++   S+   T+ L S     ++L   LF + GL  +           
Sbjct: 579 LSQQLEIDLAKLEETATSIAGETFNLGSP----KQLSVILFDKLGLSTK----------- 623

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                        ++ +++   S  +     ++ ++  G +   +++   S+        
Sbjct: 624 -------------YSRKIKTGYSTDVATLEKLQEVDETGFVDAMMEYRTLSKLKSTYVDA 670

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV 378
            P    P   R H   +Q +T      +S+P+    P++   S  +R   +   G  +  
Sbjct: 671 LPALVRPDTQRLHTNFNQTVTATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGYLMAA 730

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++ E   L+A++  ED++  T    F    + +T D+R I K +   
Sbjct: 731 ADYSQIELRILAHLSQEPILLQAYQQNEDIHTVTARLVFE--KSDITSDERRIAKTINFG 788

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y  G+  F +   +TG++ +                 A  F +   E +P+       
Sbjct: 789 VIYGMGSLRFSR---STGIDKSI----------------ANEFIKRFNERYPQ------- 822

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR-DVPLVYMKKDKNN 557
           +    E VKK               + Q + +T      I+ R+R  D     ++K KN+
Sbjct: 823 VFAYLEGVKK-------------QAISQGYVET------ILGRRRYVDFKNDSLRKLKNS 863

Query: 558 LI--LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               + L   ++L   D G  RS  N                    +Q  S DI+   M+
Sbjct: 864 KPEDIDLSKLKNLGPEDAGLLRSAANAP------------------IQGSSADIIKIAMI 905

Query: 616 NA----TKAGYDIVLTVHDEIVCETP 637
                  K    ++L VHDE+V E P
Sbjct: 906 RMHEVLQKYQARLLLQVHDELVFEVP 931


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%)

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            +R   +A EGKKL+ AD + IE R+LA +A      +AFE G D++  T +  F VA  Q
Sbjct: 804  IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            +T D R   K +   + Y  G  AF  +A   G+                  E+A  F +
Sbjct: 864  MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
               E  P   I D +I T     K++ R+K   V+ L+  +                   
Sbjct: 905  QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                  Y +   NN     PS R+ V       R  +N   +         G   + I +
Sbjct: 940  ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973

Query: 604  AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658
            A++R    E  + A K    ++L VHDE+V E PD DE  A++  +  +M   P+ A
Sbjct: 974  AMTR---MEDALEAKKLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1026


>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
 gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
          Length = 938

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 659 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775

Query: 444 GAKAF 448
           G  AF
Sbjct: 776 GMSAF 780


>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
 gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
          Length = 938

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 659 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775

Query: 444 GAKAF 448
           G  AF
Sbjct: 776 GMSAF 780


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      ++DP+ LQ I         +R   IA++G K+V AD + I
Sbjct: 633 KTQRVHTSYHQAVTATGRLSSTDPN-LQNIPIRSEEGRRIREAFIAADGYKIVAADYSQI 691

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  L AF  G D++  T A  F V+  +VT D R   K +   L Y  G
Sbjct: 692 ELRIMAHLSQDKGLLSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNFGLIY--G 749

Query: 445 AKAF 448
             AF
Sbjct: 750 MSAF 753


>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 942

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   I +EG KL+ AD + 
Sbjct: 664 PKTGRVHTNFSQATAVTGRLASSDPN-LQNIPVRTEEGRRIREAFIPAEGCKLLSADYSQ 722

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A +A ++  L AF  G+D++  T A  F V    V+ +QR   KV+   L Y  
Sbjct: 723 IELRIMAHIAEDENLLTAFRDGKDVHQATAAEIFGVPLDDVSSEQRRYAKVINFGLIY-- 780

Query: 444 GAKAFQKMASTTGL 457
           G  AF  +A   G+
Sbjct: 781 GMSAF-GLAGNLGI 793


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 10/131 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+   I      S  +R   +   G  L+ AD + IE R
Sbjct: 694 GRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEAGWTLISADYSQIELR 753

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++GE+  +KA+++G+D++  T    F+    +VT D+R +GK +   + Y  G   
Sbjct: 754 ILAHLSGEEVLVKAYQSGDDVHALTARLLFD--KDEVTSDERRLGKTINFGVIYGMG--- 808

Query: 448 FQKMASTTGLN 458
            Q+ A  TG++
Sbjct: 809 VQRFARETGVS 819


>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
 gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
          Length = 875

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 26/160 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ +V+ +  DG++  T Q    ++TGR S      QN+P   R+ E             
Sbjct: 589 IDGMVDLIKEDGKIHTTFQ-QTIAQTGRISSTNPNLQNIP--IRTEE------------- 632

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   + SEG  L+ AD + IE RVLA +A ++  + AF+ G D++ 
Sbjct: 633 ----------GRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMIDAFKHGADIHR 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            T +  F V   +VT  QR+  K +   + Y  G  +  K
Sbjct: 683 KTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSLSK 722


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 125/308 (40%), Gaps = 50/308 (16%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRL-EPLSSKEQE--LWYLD-------QTINDRGYCVDVA 202
           A  L  +Y   D  V R ++  L E L  ++QE   W ++       + +   G  +DV 
Sbjct: 498 AEELLVDYAAEDADVVRRLYPLLREKLEQEQQEKLFWEVEMPLVGVLERMEREGVQLDVQ 557

Query: 203 LAHTLNQIVDVERTKLDQELESLTY---GLVSSSRCLEKLKTWLFLETGLHLEDL----- 254
             H +++ +    T   +E E   +   G   +    +++   LF E GLH +       
Sbjct: 558 RLHEVSEKL----TNDLRETEDAIFHWAGHSFNVSSPKQVGVVLFEELGLHAKGKKTKTN 613

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
           T +T + VLS      P   ++ + R             L E +  DGRLR +      +
Sbjct: 614 TYSTSEEVLSKCVDQHPIVQKILDYRGLKKLIGTYT-EALPELVYPDGRLRTSYN-QAVT 671

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P  S   +E                         +RS  +    +
Sbjct: 672 VTGRLSSSDPNLQNIPIRSAMGQE-------------------------IRSAFVPRSSE 706

Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
              + AD + IE R++A  + ++  +KAF  GED++ +T AR +NVAP +VT  QR+  K
Sbjct: 707 FTFLSADYSQIELRLMAHFSQDEHLIKAFVEGEDVHRSTAARIYNVAPEEVTPLQRSHAK 766

Query: 434 VMELALGY 441
                + Y
Sbjct: 767 TANFGIIY 774


>gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik]
 gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik]
          Length = 600

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 184/473 (38%), Gaps = 85/473 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV--TIVAH 71
           +D    G+  Y+      L  FG  D   E W    D    Q+ +E  E  D    IV  
Sbjct: 40  VDTETTGLDIYSSTFRCRLVQFGTQD---EAWVLPVDESPTQLQQETREALDKLGKIVMQ 96

Query: 72  NSYFERTVLKACFNLDIPIHRW---ICTLVLAR-SNGLPSALKAVGEALK------LSSQ 121
           N+ ++  VL  CF + +    W   + T +LA+  +  P      G +L+      +S  
Sbjct: 97  NASYDLQVLDHCFGIKME-DLWPKVLDTQILAKLVDPRPYGAGGFGHSLEELIAEFISKD 155

Query: 122 KMEEGKELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---FKRLE 176
           + ++ K L+A+  K    T   ++      H E    +  Y   D   T  I     RL 
Sbjct: 156 QAKDVKGLMAKLAKEHKTTKAKIWSTIDLFHPE----YLTYAGMDTIFTARICRKLTRLV 211

Query: 177 PLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL-- 229
           P  S+     E ++  +   I+ +G+ +DV  A  L+     E++  +  L +  YGL  
Sbjct: 212 PDVSRGLVPYEHKISEICSYIDRKGFQLDVEYAQELSDRWLYEKSVWEAILFT-EYGLDN 270

Query: 230 -VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-----NKKLTPQAIQVFNNRMRA 283
             S+ +C + ++     E G  ++  T+T  ++V +       KK TP+   +      A
Sbjct: 271 PNSNEQCADVIE-----EAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAALAAMIQEA 325

Query: 284 SRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +    +   +   +E  +SD R    +  L A RT R S    P Q LP    +     
Sbjct: 326 QKLGKWRNTWVQKFLEVKDSDDRCHTFVNPLQA-RTSRMSITGIPAQTLPAGDWT----- 379

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  VR C +A  G  +   D    E RVLA ++G++  ++
Sbjct: 380 -----------------------VRRCFLAEPGHVMSSIDYQTQELRVLAALSGDKTMIE 416

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           AF+TG DL+  T         A   +  R IGK+      Y GGAK   + A+
Sbjct: 417 AFKTGADLHQMT---------ADAAQVPRKIGKMANFLTVYGGGAKTLAEQAN 460


>gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80]
 gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80]
          Length = 525

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 246 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 304

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 305 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 362

Query: 444 GAKAF 448
           G  AF
Sbjct: 363 GMSAF 367


>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 149/356 (41%), Gaps = 56/356 (15%)

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSS 180
           +MEE  ELI R  K    +   DR      E  R+  +Y   DV  T  + + L P L +
Sbjct: 443 EMEEITELIGRGKK----QLTMDRA-----EIARV-TQYACADVEATYRLVEVLRPQLEA 492

Query: 181 KEQ-------ELWYLDQTIN--DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             Q       EL  +D  I+    G  +DV     L+ ++D +   L++ +  L  G   
Sbjct: 493 HNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA-GHPF 551

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L T LF E GL     T+T     Q VL + +   P    +   R       +
Sbjct: 552 NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ------L 605

Query: 289 LKL-NTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           LKL +T V+A+        GR+  T+     + TGR S      QN+P    +  EL   
Sbjct: 606 LKLKSTYVDALPRQVHPQTGRVH-TIFHQTVAATGRLSSSDPNLQNIP----ARGELGLA 660

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
           +                I+D      IA E   L+  D + IE R++A  + +   L+AF
Sbjct: 661 VRR------------AFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAF 708

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             G+D++  T +  F V    VT + R I KV+   + Y  G +A+  +A  TG++
Sbjct: 709 AEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMY--GMQAY-GLARDTGMS 761


>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
 gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
          Length = 916

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q IT      ++DP+ LQ I         +R   +A++G K+  AD + IE R
Sbjct: 641 RVHTSYHQAITATGRLSSTDPN-LQNIPIRTEEGRKIRQAFVAAKGYKIAAADYSQIELR 699

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++ ++  L AF  G D++  T A  F V+ A+VT D R   K +   L Y  G  A
Sbjct: 700 IMAHLSQDKGLLNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIY--GMSA 757

Query: 448 F 448
           F
Sbjct: 758 F 758


>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
 gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
          Length = 896

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P +  P+  R H   +Q +       +SDP+ LQ I         +R+  IA EG  ++
Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ +   L+AF  G D++  T +  F      V+K+QR   K +  
Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF 729

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            L Y  G  AF  +A   G+      H + T
Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757


>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
 gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
          Length = 917

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 149/356 (41%), Gaps = 56/356 (15%)

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSS 180
           +MEE  ELI R  K    +   DR      E  R+  +Y   DV  T  + + L P L +
Sbjct: 443 EMEEITELIGRGKK----QLTMDRA-----EIARV-TQYACADVEATYRLVEVLRPQLEA 492

Query: 181 KEQ-------ELWYLDQTIN--DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             Q       EL  +D  I+    G  +DV     L+ ++D +   L++ +  L  G   
Sbjct: 493 HNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA-GHPF 551

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L T LF E GL     T+T     Q VL + +   P    +   R       +
Sbjct: 552 NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ------L 605

Query: 289 LKL-NTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           LKL +T V+A+        GR+  T+     + TGR S      QN+P    +  EL   
Sbjct: 606 LKLKSTYVDALPRQVHPQTGRVH-TIFHQTVAATGRLSSSDPNLQNIP----ARGELGLA 660

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
           +                I+D      IA E   L+  D + IE R++A  + +   L+AF
Sbjct: 661 VRR------------AFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAF 708

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             G+D++  T +  F V    VT + R I KV+   + Y  G +A+  +A  TG++
Sbjct: 709 AEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMY--GMQAY-GLARDTGMS 761


>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 938

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 659 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775

Query: 444 GAKAF 448
           G  AF
Sbjct: 776 GMSAF 780


>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
 gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
          Length = 890

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 611 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 669

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 670 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 727

Query: 444 GAKAF 448
           G  AF
Sbjct: 728 GMSAF 732


>gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 317

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 38  PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 96

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 97  IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 154

Query: 444 GAKAF 448
           G  AF
Sbjct: 155 GMSAF 159


>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
 gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
          Length = 938

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 659 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775

Query: 444 GAKAF 448
           G  AF
Sbjct: 776 GMSAF 780


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + ++  + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 149/356 (41%), Gaps = 56/356 (15%)

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSS 180
           +MEE  ELI R  K    +   DR      E  R+  +Y   DV  T  + + L P L +
Sbjct: 443 EMEEITELIGRGKK----QLTMDRA-----EIARV-TQYACADVEATYRLVEVLRPQLEA 492

Query: 181 KEQ-------ELWYLDQTIN--DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             Q       EL  +D  I+    G  +DV     L+ ++D +   L++ +  L  G   
Sbjct: 493 HNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA-GHPL 551

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L T LF E GL     T+T     Q VL + +   P    +   R       +
Sbjct: 552 NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ------L 605

Query: 289 LKL-NTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           LKL +T V+A+        GR+  T+     + TGR S      QN+P    +  EL   
Sbjct: 606 LKLKSTYVDALPRQVHPQTGRVH-TIFHQTVAATGRLSSSDPNLQNIP----ARGELGLA 660

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
           +                I+D      IA E   L+  D + IE R++A  + +   L+AF
Sbjct: 661 VRR------------AFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAF 708

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             G+D++  T +  F V    VT + R I KV+   + Y  G +A+  +A  TG++
Sbjct: 709 AEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMY--GMQAY-GLARDTGMS 761


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 136/305 (44%), Gaps = 28/305 (9%)

Query: 155 RLFGEYCKGDVTVTREIF----KRLEP-----LSSKEQELWYLDQTINDRGYCVDV-ALA 204
           +L  +Y   D  VT  ++    K+L P     L+  E  L Y+   +  RG  +D+ AL 
Sbjct: 491 KLLCDYASEDAYVTLRLYQALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQ 550

Query: 205 HTLNQIVDVERTKLDQELESLTY-GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
            +  ++++    +L++E++S +  GL       +++   LF E  + +E   +T     +
Sbjct: 551 RSRQELLE-SVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELQI-MEKPRKTKTGSYV 608

Query: 264 SSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMN----SDGRLRGTLQFLGASRTGR 318
           ++ + L P +++      +   R A   LNT ++ +      DG+L  +      + TGR
Sbjct: 609 TNEETLLPLRSLHPVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAVTATGR 667

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC--VRSCVIASEGKKL 376
            S      QN+P  S     L +       +  +DP     +S C  V        G  L
Sbjct: 668 LSSSNPNLQNIPIRSDLGRPLRR-------AFVADPYYTPRLSACAPVDHTHEKPIGAVL 720

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + +E RV+A ++ +   + +F +G+D++  T A+ F VAP +VT   R+  K   
Sbjct: 721 LSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTAN 780

Query: 437 LALGY 441
             + Y
Sbjct: 781 FGINY 785


>gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 877

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 26/148 (17%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L  A++ DGR+R T +   AS TGR S      QNLP                   I +D
Sbjct: 594 LENAIDEDGRIRSTFRQNIAS-TGRLSSQEPNLQNLP-------------------IKTD 633

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                     +R    A EGK L+ AD + IE R+LA +A ++    AF  G D++  T 
Sbjct: 634 E------GRAIRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFNRGIDIHTQTA 687

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +  F+    +VTK QR+  K +   + Y
Sbjct: 688 SEVFHTPLDEVTKLQRSEAKAVNFGIIY 715


>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
 gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
          Length = 896

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P +  P+  R H   +Q +       +SDP+ LQ I         +R+  IA EG  ++
Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ +   L+AF  G D++  T +  F      V+K+QR   K +  
Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF 729

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            L Y  G  AF  +A   G+      H + T
Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757


>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
 gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
          Length = 896

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P +  P+  R H   +Q +       +SDP+ LQ I         +R+  IA EG  ++
Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ +   L+AF  G D++  T +  F      V+K+QR   K +  
Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF 729

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            L Y  G  AF  +A   G+      H + T
Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++ V   E   L+ AD + IE R++A ++ E   ++AF+ GED++ +T ++ FNV   QV
Sbjct: 708 KAFVPRDENYTLLAADYSQIELRIIAALSDETTMIEAFKNGEDIHASTASKVFNVPLDQV 767

Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448
           T++QR+  K +   + Y  G  AF
Sbjct: 768 TREQRSNAKTVNFGIIY--GVSAF 789


>gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3]
          Length = 857

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 31/181 (17%)

Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           A  KLN+     L++ +  DGR+  T     A RTGR S      QN+P           
Sbjct: 562 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIP----------- 609

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           I T L + +              R+  +A  G  LV AD + IE R+LA + G++   +A
Sbjct: 610 IRTELGSQL--------------RAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQQA 655

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  GED++ +T A+ + +  ++VT   R+  K +   + Y  GA +  K    T    + 
Sbjct: 656 FLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYSLSKDIGVTVKEADA 715

Query: 462 F 462
           F
Sbjct: 716 F 716


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 627 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743

Query: 444 GAKAF 448
           G  AF
Sbjct: 744 GMSAF 748


>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
          Length = 928

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 627 LEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEAG 685

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    +  
Sbjct: 686 RRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGLDI 745

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QV+ +QR   K +   L Y  G  AF
Sbjct: 746 EQVSSEQRRRAKAVNFGLIY--GMSAF 770


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA EG +++ AD + 
Sbjct: 333 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQ 391

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F ++  +VT +QR   K +   L Y  
Sbjct: 392 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIY-- 449

Query: 444 GAKAF 448
           G  AF
Sbjct: 450 GMSAF 454


>gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes
           HL025PA1]
          Length = 112

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET SP  L K G+  YAE  D  +++F +  D  PVE+ D      +P  + 
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLV 98
            AL +  V   AHN+ FER  L A      P           +W CT+V
Sbjct: 61  AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMV 109


>gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
 gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
          Length = 808

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 136/360 (37%), Gaps = 96/360 (26%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR +      QN+PRP                    D D  +I     R+  +   G
Sbjct: 518 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 552

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           K L   D +G E R++AW +G++   + F TG D++  T +     + A++ K +R   K
Sbjct: 553 KILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 612

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                + Y G                                               EHA
Sbjct: 613 AGNFGISYGG----------------------------------------------TEHA 626

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551
           ++  F      + K   R+     +++ N +  A+++  E  + I+  AR++  V  +Y 
Sbjct: 627 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 679

Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  + +LP   S   RD G+  R   NT  +    +     K+   I +++ +   
Sbjct: 680 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 730

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667
            EG+++   A  D++  +HDEI+ E  D  E   ++   +  +M   P     +P++AEG
Sbjct: 731 -EGVLSHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 787


>gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
 gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
          Length = 846

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 127/329 (38%), Gaps = 64/329 (19%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGD-----VTVTREIFKRLEPLSSKEQ---ELWYLDQTIN 193
           LYD   P + E       Y  GD     V+  +  +   E LS++ Q    LW+L + + 
Sbjct: 393 LYD---PANSEPASTVRRYGAGDLVADPVSHAQAAWLLWETLSARTQGDERLWWLYREVE 449

Query: 194 D-----------RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
                       RG  +DV     L++ +  E   L+ E+  L  G   +    ++L+  
Sbjct: 450 KPLAAVLAQMECRGVALDVPYLQELSEELGKELGYLEAEIHRLA-GHPFNVNSRDQLEAI 508

Query: 243 LFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           L+ E GL       TT +R     VL   + L P   ++ + R  A              
Sbjct: 509 LYDELGLQAGGKKTTTGKRSTAASVLEEMRSLHPIVGKILDYRELA-------------- 554

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                +L+GT  +L             P    P+  R H   +Q +       +SDP+  
Sbjct: 555 -----KLKGT--YLDP----------LPKLIHPKTGRLHTRFNQTVAATGRLSSSDPNLQ 597

Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I     +   +R   +A +G  LVVAD + IE R+LA ++G++   K F    D++  T
Sbjct: 598 NIPVRTEVGRKIRKAFVAEKGYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQT 657

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            A  F + P +V    R   K +   + Y
Sbjct: 658 AAWMFGLEPEKVDPQHRRAAKTINFGVLY 686


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 651 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 709

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 710 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 767

Query: 444 GAKAF 448
           G  AF
Sbjct: 768 GMSAF 772


>gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 911

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   I +  K  +  D + IE RVLA M+ E   + AF    D+++      FN++  Q
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +T +QR I KV    + Y  G   F  +AS   +N+N    ++K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNMNVNQAKQMIK 761


>gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15]
 gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
          Length = 892

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 9/169 (5%)

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V +L  L EA +    L   LQ+ G ++         P    P   R H   +Q +T+  
Sbjct: 574 VEELERLAEAGHEIAAL--ILQYRGLAKLKSTYTDALPKLVQPATGRVHTSYNQTVTNTG 631

Query: 348 TSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +S+P+ LQ I         +R   IA EG  L+ AD + IE RVLA  + ++    A
Sbjct: 632 RLSSSEPN-LQNIPVRTEEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVFCDA 690

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           F   ED++  T A  F + P  VT + R   K +   + Y  GA +  K
Sbjct: 691 FAKDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAK 739


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 627 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743

Query: 444 GAKAF 448
           G  AF
Sbjct: 744 GMSAF 748


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
 gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
          Length = 1040

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 130/327 (39%), Gaps = 40/327 (12%)

Query: 163 GDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           G V   R   + LE L  + E+ L  +   + + G  +D A    L++      T L+++
Sbjct: 617 GQVLAQRVAAEGLERLYDTLERPLIEILADMEEAGVALDRARLRQLSRDFSARLTDLERQ 676

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              L  G   +     +L+  LF   GL     T     +T Q VL     L  Q  +V 
Sbjct: 677 AHQLA-GEPFNLSSPPQLRVILFERLGLPPRGKTPKGEASTAQEVLEELAALH-QLPKVL 734

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
               R  +     L+ L    + DGR+R T    G + TGR S      QN+P   R+ E
Sbjct: 735 LEHRRIEKLKNTYLDALPNLTHPDGRIRATFN-QGVTATGRLSSSEPNLQNIP--VRTEE 791

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGE 395
                                     VR   +A +  +  L+ AD + IE RVLA  + +
Sbjct: 792 -----------------------GRQVRQAFVAGDPARQVLLTADYSQIELRVLAHFSRD 828

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AFE   D++    A+ F VA   VT DQR + K +   + Y   A     +AS  
Sbjct: 829 PALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNFGVIYGLSAHG---LASRL 885

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFC 482
           G++ +  A  +  N+  +++   E F 
Sbjct: 886 GISQSEAAAFI--NAYFDQYPHVEAFM 910


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
          Length = 949

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG K+V AD + IE R++A ++ ++  L AF  G+D++  T +  F +   +
Sbjct: 709 IRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLEE 768

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 769 VTSEQRRSAKAINFGLIY--GMSAF 791


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 655 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 627 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743

Query: 444 GAKAF 448
           G  AF
Sbjct: 744 GMSAF 748


>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891]
 gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891]
          Length = 931

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA  G K++  D + IE R++A ++G++  L+AF+ G+D++  T A       
Sbjct: 689 RRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIMGTTI 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QV+ +QR   K +   L Y  G  AF
Sbjct: 749 DQVSSEQRRRAKAVNFGLIY--GMSAF 773


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 627 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743

Query: 444 GAKAF 448
           G  AF
Sbjct: 744 GMSAF 748


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 669 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 728

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 729 DVSVAQRSKIKAMNYGLAY 747


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 7/127 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q +T      +SDP+ LQ I         +R   +   G+ L+ AD + 
Sbjct: 613 PDSGRIHTSFNQAVTATGRLSSSDPN-LQNIPIRSEEGRAIREAFVPDAGQVLLAADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RV+A MA E    ++F  GED++  T +  F+V P  V  + R   K +   + Y  
Sbjct: 672 IELRVMAHMADEPILQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAKTINFGVLYGM 731

Query: 444 GAKAFQK 450
           GA +  K
Sbjct: 732 GAFSLAK 738


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   +A  G ++V AD + IE R
Sbjct: 654 RLHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELR 712

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++A ++G++  L AF  G D++  T A  F VA   V+ +QR   K +   L Y
Sbjct: 713 IMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIY 766


>gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 131/317 (41%), Gaps = 80/317 (25%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+   I      S  +R   +  E  KL+ AD + IE R
Sbjct: 694 GRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLISADYSQIELR 753

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++GE+   +A++ G+D++  T      +    +  ++R +GK +   + Y  GA  
Sbjct: 754 ILAHLSGEEILQEAYKNGDDVH--TLTAKILLEKESINSNERRLGKTINFGVIYGMGA-- 809

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            Q+ A +TGLN                  +A++F    +E +P+     +F         
Sbjct: 810 -QRFARSTGLN----------------QSEAKDFLNRFKERYPK-----VF--------- 838

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            ++ +   R++     L + + QT      ++ R+R      Y   DKN L  +L S   
Sbjct: 839 -SFLELQERLA-----LSKGYVQT------LLGRRR------YFNFDKNGLGRLLGS--- 877

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMN-ATK---- 619
                       +N   ++  R      +L       +Q  S DI+   M+  ATK    
Sbjct: 878 ----------DPMNIDLKRARRAGMEAQQLRAAANAPIQGSSADIIKIAMVQLATKLKVS 927

Query: 620 -AGYDIVLTVHDEIVCE 635
               +++L VHDE+V E
Sbjct: 928 GVAANLLLQVHDELVLE 944


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
 gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
          Length = 896

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P +  P+  R H   +Q +       +SDP+ LQ I         +R+  IA EG  ++
Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ +   L+AF  G D++  T +  F      V+K+QR   K +  
Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF 729

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            L Y  G  AF  +A   G+      H + T
Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 42/219 (19%)

Query: 291 LNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPT 348
           ++ L E +  DGR+    +Q + A  TGR S      QN+P R  R  +           
Sbjct: 669 VDALPEQVEEDGRVHTDYMQTVAA--TGRLSSNNPNLQNIPIRTERGRQ----------- 715

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                           ++ V  +E   L+ AD + IE R++A ++ E   ++AF+ GED+
Sbjct: 716 --------------VRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEAFKNGEDI 761

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T A+ FNV   +VT++QR+  K +   + Y  G  AF  +++ T L  +    L+ T
Sbjct: 762 HASTAAKVFNVPINEVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLTRSESKDLIDT 818

Query: 469 --NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
              + P+         R    N  + A ED ++ T   R
Sbjct: 819 YYKTYPK--------LRNYMSNLVDDAREDGYVSTVLGR 849


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 611 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 669

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 670 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 727

Query: 444 GAKAF 448
           G  AF
Sbjct: 728 GMSAF 732


>gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
          Length = 857

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 31/181 (17%)

Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           A  KLN+     L++ +  DGR+  T     A RTGR S      QN+P           
Sbjct: 562 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIP----------- 609

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           I T L + +              R+  +A  G  LV AD + IE R+LA + G++   +A
Sbjct: 610 IRTELGSQL--------------RAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQQA 655

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  GED++ +T A+ + +  ++VT   R+  K +   + Y  GA +  K    T    + 
Sbjct: 656 FLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYSLSKDIGVTVKEADA 715

Query: 462 F 462
           F
Sbjct: 716 F 716


>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
 gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
          Length = 938

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 659 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775

Query: 444 GAKAF 448
           G  AF
Sbjct: 776 GMSAF 780


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 627 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743

Query: 444 GAKAF 448
           G  AF
Sbjct: 744 GMSAF 748


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
 gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
          Length = 916

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 8/129 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380
           P  +   SR H   +QI T      +S+P+    P++      +R   +A EGK L+  D
Sbjct: 633 PNLVDSNSRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSID 692

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELAL 439
            + +E RVL  M+ ++  ++A+   +DL+  T  R FN++ +  VT++QR I K++  ++
Sbjct: 693 YSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSI 752

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 753 IY--GKTAF 759


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 868

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380
           P+ + +  R H   +Q+ T      +S+P+   I     +   +RSC  AS+G  L+ AD
Sbjct: 582 PRLIGKDGRVHTTFNQLATATGRLSSSNPNLQNIPIRGSLGQRMRSCFTASQGNLLISAD 641

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + +E RVLA  + +   L AF  G D++  T +  +  +  +VT D+R   K +   L 
Sbjct: 642 YSQVELRVLAHYSKDPTLLTAFLEGADIHTRTASLLYEKSQEEVTADERRNAKTINFGLI 701

Query: 441 YQGGAKAFQKMASTTGLNLN 460
           Y  G    QK+A      LN
Sbjct: 702 YGMGP---QKLAQELNTTLN 718


>gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51]
 gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51]
          Length = 802

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 136/360 (37%), Gaps = 96/360 (26%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR +      QN+PRP                    D D  +I     R+  +   G
Sbjct: 512 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 546

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           K L   D +G E R++AW +G++   + F TG D++  T +     + A++ K +R   K
Sbjct: 547 KILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 606

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                + Y G                                               EHA
Sbjct: 607 AGNFGISYGG----------------------------------------------TEHA 620

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551
           ++  F      + K   R+     +++ N +  A+++  E  + I+  AR++  V  +Y 
Sbjct: 621 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 673

Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  + +LP   S   RD G+  R   NT  +    +     K+   I +++ +   
Sbjct: 674 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 724

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667
            EG+++   A  D++  +HDEI+ E  D  E   ++   +  +M   P     +P++AEG
Sbjct: 725 -EGVLSHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 781


>gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266]
          Length = 931

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 690 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 749

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 750 DVSVAQRSKIKAMNYGLAY 768


>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 896

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P +  P+  R H   +Q +       +SDP+ LQ I         +R+  IA EG  ++
Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ +   L+AF  G D++  T +  F      V+K+QR   K +  
Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF 729

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            L Y  G  AF  +A   G+      H + T
Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757


>gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
 gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
          Length = 916

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 8/129 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380
           P  +   SR H   +QI T      +S+P+    P++      +R   +A EGK L+  D
Sbjct: 633 PNLVDSNSRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSID 692

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELAL 439
            + +E RVL  M+ ++  ++A+   +DL+  T  R FN++ +  VT++QR I K++  ++
Sbjct: 693 YSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSI 752

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 753 IY--GKTAF 759


>gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q IT      ++DP+   I     +   +R   IA +G+ ++ AD + IE R+
Sbjct: 651 RVHTSYHQAITATGRLSSTDPNLQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A  + ++  LKAF  G D++  T A    +A   VT DQR   K +   L Y  G  AF
Sbjct: 711 MAHFSQDEALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAINFGLLY--GMSAF 768


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
          Length = 931

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 690 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 749

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 750 DVSVAQRSKIKAMNYGLAY 768


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVV 378
           P+ + +  R H +  Q +       +++P+ LQ I           ++ V   E   L+ 
Sbjct: 666 PEQVAQDGRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTERGRQVRKAFVPRDENHTLLA 724

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ E+  ++AF  GED++ +T A+ FNV   +VT++QR+  K +   
Sbjct: 725 ADYSQIELRIIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFG 784

Query: 439 LGYQGGAKAF 448
           + Y  G  AF
Sbjct: 785 IIY--GVSAF 792


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
          Length = 915

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 674 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 733

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 734 DVSVAQRSKIKAMNYGLAY 752


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNDEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA  G K++  D + IE R++A ++G++  L AF+ G+D++  T A       
Sbjct: 689 RRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIMGTTI 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            QV+ +QR   K +   L Y  G  AF
Sbjct: 749 DQVSSEQRRRAKAVNFGLIY--GMSAF 773


>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
 gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
          Length = 984

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P   LP   R H    Q +       +++P+ LQ I         VR    A EG+ +V
Sbjct: 699 LPEMILPATGRVHTNYAQAVAITGRLASNNPN-LQNIPIRTEQGRRVRRAFCAPEGQMMV 757

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G+     AF+  ED++  T A  F V P  +T +QR   K +  
Sbjct: 758 SADYSQIELRIMAHLSGDPTLQAAFQNNEDVHRRTAAEVFGVPPEHITAEQRRYAKTINF 817

Query: 438 ALGYQGGAKAFQKMASTTGLN 458
            L Y  G  +F  +A   G++
Sbjct: 818 GLIY--GMSSF-GLAKALGID 835


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 572 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 631 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 688

Query: 444 GAKAF 448
           G  AF
Sbjct: 689 GMSAF 693


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 607 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 665

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y  
Sbjct: 666 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 723

Query: 444 GAKAF 448
           G  AF
Sbjct: 724 GMSAF 728


>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
 gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
          Length = 921

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           LQ  G S+         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 619 LQHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQQAVTATGRLSSTDPN-LQNIPIRTAEG 677

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             VR   I  +G K+V  D + IE R++A ++ ++  LKAF  G D++  T A  F    
Sbjct: 678 RRVRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESLLKAFAEGLDIHRATAAEVFGCKA 737

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            +V+ DQR   K +   L Y  G  AF
Sbjct: 738 DEVSNDQRRQAKAVNFGLIY--GMSAF 762


>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVV 378
           P+ + +  R H +  Q +       +++P+ LQ I           ++ V   E   L+ 
Sbjct: 666 PEQVAQDGRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTERGRQVRKAFVPRDENHTLLA 724

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ E+  ++AF  GED++ +T A+ FNV   +VT++QR+  K +   
Sbjct: 725 ADYSQIELRIIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFG 784

Query: 439 LGYQGGAKAF 448
           + Y  G  AF
Sbjct: 785 IIY--GVSAF 792


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%)

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
           +Q I   +R    A EGK LV++D + IE R+ +   G++  +KAF  G+DL+  T +  
Sbjct: 332 VQNIPRDLRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGKDLHRYTASVL 391

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
                  ++K++R + K +   L Y   A+     A + G++L+ 
Sbjct: 392 LGKKEEDISKEERQLAKAVNFGLIYGISARGLSDYAKSYGIDLSV 436


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
          Length = 910

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 669 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 728

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 729 DVSVAQRSKIKAMNYGLAY 747


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 932

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA EG +++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F ++  +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1040

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 133/308 (43%), Gaps = 48/308 (15%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV--DVERTKLDQELESLTYGL 229
           ++R+  L   E  L  L + + D G  VD  L    +Q +  +V+RT+     E++   +
Sbjct: 631 YRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTE-TAAFEAIGREV 689

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTP----QAIQVFNNRMR 282
             SS   ++L+  LF + GL     T+T   T  + L       P    QA+  F +R  
Sbjct: 690 NLSSP--KQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDR-- 745

Query: 283 ASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340
              S +L++   L + +  DGR+  T     A+ TGR S      QN+P R        +
Sbjct: 746 ---SKLLQIVRNLGDRIAPDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDGARIRE 801

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
             I  +P            +S              L+ AD + IE R++A ++G++  + 
Sbjct: 802 TFIAQMP-----------FVS--------------LMTADYSQIEMRIMAHLSGDEGLIA 836

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++GEDL+ +  A  F VAP  VT  QR   K     L Y  G  AF  +A    ++  
Sbjct: 837 AFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAY--GLSAF-GLAGQLRISQG 893

Query: 461 TFAHLVKT 468
              HL++T
Sbjct: 894 EAKHLMET 901


>gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 864

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 31/169 (18%)

Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           A  KLN+     L++ +  DGR+  T     A RTGR S      QN+P           
Sbjct: 569 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIP----------- 616

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           I T L + +              R+  IA  G  LV AD + IE R+LA + G++   +A
Sbjct: 617 IRTELGSQL--------------RAYFIAKPGCVLVDADYSQIELRILAHITGDEHMQQA 662

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           F  GED++ +T A+ + +   +VT   R+  K +   + Y  GA +  K
Sbjct: 663 FLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINFGIMYGKGAYSLAK 711


>gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12]
 gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12]
          Length = 595

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 181/478 (37%), Gaps = 102/478 (21%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69
           +D    G+  Y++     L  FG        PVEL   +     P+ + EAL   D  +V
Sbjct: 40  VDTETTGLDIYSDTFRCRLVQFGTQSEAWVLPVELGGGI-----PENVIEALYEVD-KLV 93

Query: 70  AHNSYFERTVLK--ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
             N+ ++  VL       ++    + + T +LA+    P   +A G    L        +
Sbjct: 94  MQNASYDLQVLDQIGYAAMEDLWPKVLDTQILAKLVD-PRPFEAGGFGHSL--------E 144

Query: 128 ELIARFCKGETHEC-------LYDRNKPNHREAWRL-------FGEYCKGDVTVTREIFK 173
           ELIA F   E  E        L   +K    + W         +  Y   D   T  I  
Sbjct: 145 ELIAEFIDKEQAENVKGLMTKLAKEHKTTKAKIWSTIDLFHPEYLTYAGMDTIFTARICS 204

Query: 174 RLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +L PL           E +L  +   I+ +G+ +DV  A  L+     E++  D  +   
Sbjct: 205 KLAPLVPDVSRSLVPYEHKLSEICSYIDRKGFLLDVEYAQALSDKWLYEKSVWDA-IAFT 263

Query: 226 TYGLV---SSSRCLEKLKTWLFLETGLHLEDLTETTCQRV-------LSSNKKLTPQAIQ 275
            YGL    S+ +C + L+     E G+ ++  TE+  ++V       LS +       IQ
Sbjct: 264 EYGLENVNSTDQCADALE-----EMGVKIKGRTESGKRQVNDDLLQSLSDDGNELAAIIQ 318

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                 + +++ V K  ++ ++ +        LQ    +RT R S    P Q LP     
Sbjct: 319 EAKKLGKWNKTWVAKFLSVRDSEDRCHTFVNPLQ----ARTSRMSITGIPAQTLP----- 369

Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                    SD  VR C +A  G+ +   D    E RVLA ++G
Sbjct: 370 ------------------------ASDWIVRRCFVADPGQVMASVDYQTQELRVLAALSG 405

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +Q  ++AF+TG DL+  T         A  ++  R +GK+      Y GGAK   + A
Sbjct: 406 DQTMIEAFKTGADLHQMT---------ADASQVVRKVGKMANFLTVYGGGAKTLAEQA 454


>gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 649 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 708

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 709 DVSVAQRSKIKAMNYGLAY 727


>gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 11/145 (7%)

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGK-K 375
           V P    P   R H    Q  T      +SDP+ LQ +      S  +R  V+      K
Sbjct: 609 VLPKLVHPETGRIHSSFHQTGTATGRLSSSDPN-LQNLPSKQEESREIRKAVVPQRDSWK 667

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++ AD + IE RVLA ++ +Q  ++AF+  ED++  T +R F V   QVT   R+IGK++
Sbjct: 668 ILSADYSQIELRVLAHLSNDQNLIEAFKKDEDIHNFTSSRIFQVPENQVTPQMRSIGKMV 727

Query: 436 ELALGYQGGAKAFQKMASTTGLNLN 460
             ++ Y  G   +  ++  TGL+ +
Sbjct: 728 NFSVIY--GVSPY-GLSQRTGLSYD 749


>gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
 gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
          Length = 910

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VRS  +A +G K++ AD + IE R+L++ A  +     F  GED++ +T A+ F +   Q
Sbjct: 667 VRSAFVAPQGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQ 726

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT++ R   K +   + Y  G  AF
Sbjct: 727 VTEEHRRKAKAINFGVIY--GISAF 749


>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
 gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
          Length = 930

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   I  EG  +V AD + IE R
Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIPREGFTMVAADYSQIELR 715

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++ +Q  + AF  G+D++ +T A  F +   QVT +QR   K +   L Y  G  +
Sbjct: 716 IMAHLSKDQGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIY--GMSS 773

Query: 448 F 448
           F
Sbjct: 774 F 774


>gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 870

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 27/152 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L++A + DGR+  T     A+ TGR S      QN+P   RS E             
Sbjct: 582 VDGLLKATHEDGRIHTTYAQTVAA-TGRLSSLNPNLQNIP--VRSEE------------- 625

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +  EG + L+  D + IE R++A ++ ++  ++A++ GEDL+
Sbjct: 626 ----------GRRIRDVFMVGEGYQSLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLH 675

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
               +R FNV P +VT + R+  K M   L Y
Sbjct: 676 RYVGSRVFNVEPEEVTSEMRSKVKAMSYGLAY 707


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 932

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA EG +++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F ++  +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 932

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA EG +++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F ++  +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 894

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +RS +   EG + L+ AD + IE R++A ++G+   ++AF  GEDL+    +R F V PA
Sbjct: 653 IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIFGVEPA 712

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
            V+ + R   K M   L Y  G  AF
Sbjct: 713 DVSAEMRTKVKAMSYGLAY--GLSAF 736


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      +SDP+ LQ I       
Sbjct: 636 LEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNAEG 694

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA  G K++  D + IE R++A ++G++  L+AF+ G+D++  T A    +  
Sbjct: 695 RRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPI 754

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             VT +QR   K +   L Y  G  AF
Sbjct: 755 ESVTTEQRRRAKAINFGLIY--GMSAF 779


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTTILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++ TKL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA +
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LK F    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 107/259 (41%), Gaps = 51/259 (19%)

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L+T LF + GL + + T     +T + VL +     P    +  +R R S+      +
Sbjct: 554 KQLQTILFDDHGLPILEKTPKGQASTSENVLQALALTFPLPKIILKHR-RLSKLKSTYTD 612

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  T     A  TGR S      QN+P  +R+HE              
Sbjct: 613 KLPEQINPKTGRVH-TSYHQAAVVTGRLSSSDPNLQNIP--ARTHE-------------- 655

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   IA  G  ++ AD + IE R++A  + ++  LKAF  G D++  
Sbjct: 656 ---------GRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGLLKAFAQGLDIHQA 706

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A   N+   +VT +QR   K +   L Y  G  AF  +A   G++             
Sbjct: 707 TAAEVLNIPLERVTHEQRRSAKAINFGLMY--GMSAF-GLARQLGIS------------- 750

Query: 472 PEEWEDAENFCRWMQENHP 490
               EDA+N+     + +P
Sbjct: 751 ---REDAKNYIERYFDRYP 766


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 102/480 (21%), Positives = 196/480 (40%), Gaps = 47/480 (9%)

Query: 1   MATLFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + T   + ET + +  D+   G+  +  ++ +I  A    + PV L +        + L+
Sbjct: 56  LVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAA--PNRPVILIE-FRGITNKETLR 112

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSALKAVGEAL 116
             +E+  +  V HN  FE   L     ++     WI T+++++  + GLP  L+   +  
Sbjct: 113 RFIEHPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTG 172

Query: 117 KLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            L     ++ ++  K+L              +RN P      R+        +  + ++ 
Sbjct: 173 VLPIPDLTRSIKNKKKLKQEL----------NRNLPGSYSLMRVVARELGYSLDKSLQVS 222

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDV--ALAHTL--NQIVDVERTKLDQELESLTYG 228
              +PL+  +++L Y     ND    + +  AL + +  NQ+ D  + +L         G
Sbjct: 223 DWGKPLT--QEQLQY---AANDAAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMG 277

Query: 229 LVSSSRCLEKLKTW--LFLETGLHLEDLTETTCQRVLSSNKKLT----PQAIQVFNNRMR 282
           L+     L++   W  L  E     ED  +  CQ +   + +L       +I + +N   
Sbjct: 278 LMGMGLDLDR---WGELAKEIETRREDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQV 334

Query: 283 ASRSAVLKLNTLVEAMNSDGRLR-------GTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            +  A L ++T   + ++  +L          +++   S+     G   P    P   R 
Sbjct: 335 IAALARLGIHTDSTSKDTLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRI 394

Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           H  ++Q+         S+P+  QI  +   RSC + + G KL++AD + IE R+ A +A 
Sbjct: 395 HPNVNQMRAASGRFSFSNPNLQQIPRERQYRSCFVPAPGYKLIIADYSQIELRIAAEIAN 454

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + A+   +DL+  T A        +VTK +R +GK +   L Y  GA   +  A T
Sbjct: 455 DSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMGATKLRIYAET 514


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+    H   +Q +T      +SDP+ LQ I         +R C I  +G     AD + 
Sbjct: 642 PQTGHIHTSFNQTVTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RV+A ++G++  ++AF+ G D++  T A+ +      VT+D+R   K     + Y
Sbjct: 701 IELRVMAHLSGDKHMIEAFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIY 758


>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
 gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
          Length = 938

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 7/138 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H + +Q +T      +S+P+   I      S  +R   +   G  LV AD + I
Sbjct: 664 PRTDRVHTDFNQTVTTTGRLSSSNPNLQNIPVRTSFSRRIRRAFVPEPGWLLVAADYSQI 723

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +  E   L+AF+TG D++  T AR   +   +VT ++R + K++   + Y  G
Sbjct: 724 ELRILAHLTQEPVLLEAFQTGGDVHTLT-ARLL-LGREEVTSEERRLAKIINYGVVYGMG 781

Query: 445 AKAFQKMASTTGLNLNTF 462
           A+ F +    +      F
Sbjct: 782 ARRFARETGVSATEAEDF 799


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +  +   ++S+   LQ I         VR   +A  G+ +  AD + 
Sbjct: 649 PRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTAEGRRVREAFVAPPGRVIASADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  G D++  T A  F VA  QV+ +QR   KV+   L Y  
Sbjct: 708 IELRIMAHLSGDDALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIY-- 765

Query: 444 GAKAFQKMASTTGLN 458
           G  +F  +A   G++
Sbjct: 766 GMSSF-GLARNLGID 779


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
 gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 122/308 (39%), Gaps = 78/308 (25%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EGKKL+ AD + IE R+LA +A      +AFE G D++  T +  F V   Q
Sbjct: 242 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQ 301

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +T D R   K +   + Y  G  AF  +A   G+                  E+A  F +
Sbjct: 302 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 342

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              E  P   I D +I T     KK+ R+K   V+ L+  +                   
Sbjct: 343 QYFERFP--GIRD-YIDT----TKKSCREK-GYVTTLFGRVCH----------------- 377

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                 Y +   NN     PS R+ V R   N                   G   + I +
Sbjct: 378 ------YPQIRSNN-----PSERASVERQAINA---------------PIQGTAADIIRR 411

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGL 661
           A++R    E  + A +    ++L VHDE+V E PD DE  A++  +  +M   P+ A  L
Sbjct: 412 AMTR---MEAALEAKRLTARMLLQVHDELVFEVPD-DEVEATIPVIAEVMEQAPAPALTL 467

Query: 662 --PLKAEG 667
             PL  E 
Sbjct: 468 SVPLVVEA 475


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H    Q +T      ++DP+   I     I   +R   +A EG+ L+ AD + I
Sbjct: 644 PDTHRVHTSYHQALTATGRLSSTDPNLQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQI 703

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  L AF  G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 704 ELRLMAHLSQDEALLDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLY 760


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
 gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VRS  +A  G K++ AD + IE R+L++ A  +     F  GED++ +T A+ F +   Q
Sbjct: 646 VRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQ 705

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT++ R   K +   + Y  G  AF        LN++        N   +E+     +  
Sbjct: 706 VTEENRRKAKAINFGIIY--GISAF---GLAKQLNISNTEAAQYINHYFQEYPAIRQYMH 760

Query: 484 WMQENHPEHAIEDLFIGTAC 503
             ++   EH      IG  C
Sbjct: 761 ETKKFAVEHGYVKNMIGRRC 780


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 607 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 666

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 667 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 719


>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
 gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
          Length = 875

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 26/160 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ +V+ +  DG++  T Q    ++TGR S      QN+P   R+ E             
Sbjct: 589 IDGMVDLIKEDGKIHTTFQ-QTIAQTGRISSTNPNLQNIP--IRTEE------------- 632

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   + S+G  L+ AD + IE RVLA +A ++  + AF+ G D++ 
Sbjct: 633 ----------GRLIRKAFVPSQGSVLLDADYSQIELRVLADLANDEVMIDAFKNGADIHR 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            T +  F V   +VT  QR+  K +   + Y  G  +  K
Sbjct: 683 KTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSLSK 722


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R    A EG  LV AD + I
Sbjct: 639 KSQRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRKIRQAFEAPEGYTLVAADYSQI 697

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  L AF+ G+D++  T A    V  A V  +QR   K +   L Y  G
Sbjct: 698 ELRIMAHLSGDKGLLDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIY--G 755

Query: 445 AKAF 448
             AF
Sbjct: 756 MSAF 759


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A++G ++V AD + 
Sbjct: 649 PLSGRVHTSYHQAVTATGRLSSADPN-LQNIPVRNDEGRRIRQAFVAAKGYRIVAADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  GED++  T +  F V   +V+ +QR   K +   L Y  
Sbjct: 708 IELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVPLDKVSAEQRRSAKAINFGLIY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%)

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            +R   +A EGKKL+ AD + IE R+LA +A      +AFE G D++  T +  F VA  Q
Sbjct: 804  IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            +T D R   K +   + Y  G  AF  +A   G+                  E+A  F +
Sbjct: 864  MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
               E  P   I D +I T     K++ R+K   V+ L+  +                   
Sbjct: 905  QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                  Y +   NN     PS R+ V       R  +N   +         G   + I +
Sbjct: 940  ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973

Query: 604  AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658
            A++R    E  + A +    ++L VHDE+V E PD DE  A++  +  +M   P+ A
Sbjct: 974  AMTR---MEDALEAKRLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1026


>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
 gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 965

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 10/130 (7%)

Query: 326 PQNLPRPS-RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + R + R H    Q +T      +SDP+ LQ I         +R   IA +G K++ 
Sbjct: 683 PQMVNRKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFIARKGFKVIA 741

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ ++    AF  G+D++ +T A  F +A   VT +QR   K +   
Sbjct: 742 ADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVTAEQRRSAKAINFG 801

Query: 439 LGYQGGAKAF 448
           L Y  G  +F
Sbjct: 802 LIY--GMSSF 809


>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
 gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
          Length = 909

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +T      +SDP+ LQ I         +R   IA+EG ++V AD + 
Sbjct: 631 PRTGRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRRIRQAFIAAEGYQVVAADYSQ 689

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L+AF    D++  T A  F V+   V+ +QR   K +   L Y  
Sbjct: 690 IELRIMAHLSKDAGLLEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINFGLIY-- 747

Query: 444 GAKAF 448
           G  AF
Sbjct: 748 GMSAF 752


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
 gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
          Length = 930

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 629 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 687

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 688 RRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHTATAAEIMGVSI 747

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             V+ +QR   K +   L Y  G  AF
Sbjct: 748 EDVSSEQRRRAKAVNFGLIY--GMSAF 772


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++ TKL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA +
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LK F    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++ TKL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA +
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LK F    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763


>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
 gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
          Length = 930

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 651 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQ 709

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V+   V+ +QR   K +   L Y  
Sbjct: 710 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIY-- 767

Query: 444 GAKAF 448
           G  AF
Sbjct: 768 GMSAF 772


>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
 gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
          Length = 914

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  +V AD + IE R++A ++G+   L+AF  G D++  T A  F+   A 
Sbjct: 675 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDANMLRAFADGIDIHRATAAEIFSTGAAD 734

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   KV+   L Y  G  AF
Sbjct: 735 VTTEQRRYAKVINFGLIY--GMSAF 757


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +       +++P+ LQ I         VR   +A  G+ +  AD + 
Sbjct: 649 PRTGRVHTHYAQAVAVTGRLSSNEPN-LQNIPIRTSEGRRVREAFVAPPGRVIASADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   L+AF  G D++  T A  F VA  QV+ +QR   KV+   L Y  
Sbjct: 708 IELRIMAHLSGDDALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIY-- 765

Query: 444 GAKAFQKMASTTGLN 458
           G  +F  +A   G++
Sbjct: 766 GMSSF-GLARNLGID 779


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%)

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            +R   +A EGKKL+ AD + IE R+LA +A      +AFE G D++  T +  F VA  Q
Sbjct: 809  IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 868

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            +T D R   K +   + Y  G  AF  +A   G+                  E+A  F +
Sbjct: 869  MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 909

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
               E  P   I D +I T     K++ R+K   V+ L+  +                   
Sbjct: 910  QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 944

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                  Y +   NN     PS R+ V       R  +N   +         G   + I +
Sbjct: 945  ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 978

Query: 604  AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658
            A++R    E  + A +    ++L VHDE+V E PD DE  A++  +  +M   P+ A
Sbjct: 979  AMTR---MEDALEAKRLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1031


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++ TKL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA +
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LK F    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++ TKL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA +
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LK F    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 52/286 (18%)

Query: 170 EIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           ++F RLE PL      L  ++Q+    G  +DV     L + +  E  +++Q++ ++  G
Sbjct: 557 DMFYRLEMPLVPV---LVRMEQS----GILLDVPYMRALGERMGRELAQIEQQIFAIA-G 608

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---------VFNN 279
              +    ++L   LF   G  + +L  T  +R  +    LT QA++         +   
Sbjct: 609 KPFNINSGDQLSEVLF---GPKI-NLPTTGLERTRTGRYSLTAQALEELQASDTTGIIEL 664

Query: 280 RMRASRSAVLK---LNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            +R  R + LK   ++ L   +N + GR+      LGA+ TGR S      QN+P  +R+
Sbjct: 665 ILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPNLQNIP--TRT 721

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
            E  +                       VR   IA+ G  L+ AD + IE RVLA + G+
Sbjct: 722 EEGRE-----------------------VRRGFIAAPGHVLIAADYSQIELRVLAHITGD 758

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
              ++ F  G D++  T AR F V    V K+QR I K +   + Y
Sbjct: 759 PNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIY 804


>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
 gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
          Length = 930

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + 
Sbjct: 651 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQ 709

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  L AF  G+D++  T A    V+   V+ +QR   K +   L Y  
Sbjct: 710 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIY-- 767

Query: 444 GAKAF 448
           G  AF
Sbjct: 768 GMSAF 772


>gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes
           HL030PA1]
          Length = 112

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET SP  L K G+  YAE  D  +++F +  D  PVE+ D      +P  + 
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLV 98
            AL +  V   AHN+ FER  L A      P           +W CT+V
Sbjct: 61  AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQWRCTMV 109


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR    H   +Q +T      +SDP+ LQ I         +R C I  EG +   AD + 
Sbjct: 649 PRTGHIHTSFNQAVTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RV+A ++ +   L AF  G D++  T A+ ++   ++VT+D+R   K     + Y
Sbjct: 708 IELRVMAHLSQDANMLDAFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGIIY 765


>gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054]
          Length = 895

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q++       + DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 618 GRIHTTFNQMVAATGRLSSQDPN-LQNIPVRTEEGRAIRRAFVVGEGYETLLTADYSQIE 676

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            R++A ++ ++  ++AF +GEDL+ T  ++ F VAPA V  + R   K M   L Y
Sbjct: 677 LRIMAHLSEDEALIEAFTSGEDLHTTVASQVFAVAPADVDAEMRRKIKAMSYGLAY 732


>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
 gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
          Length = 937

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G KLV AD + IE R++A ++ +   L AFE G D++  T A  F VA   
Sbjct: 698 IRQAFIAPAGYKLVAADYSQIELRIMAHLSSDSGLLSAFEKGLDVHRATAAEVFGVALDS 757

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT + R   K +   L Y  G  AF
Sbjct: 758 VTPEMRRSAKAINFGLIY--GMSAF 780


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  P+  R H    Q +T      +++P+ LQ I         +R   IA +G  L+
Sbjct: 630 LPQQINPKTGRVHTSYHQAVTTTGRLSSTNPN-LQNIPIRSAEGRRIRQAFIAPKGYCLL 688

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  L A   GED++    A  F++A  +VT +QR   K +  
Sbjct: 689 AADYSQIELRIMAHLSEDEKLLSALTAGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVNF 748

Query: 438 ALGYQGGAKAF 448
            L Y  G +AF
Sbjct: 749 GLMY--GMQAF 757


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 35/195 (17%)

Query: 258 TCQRVLS--SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGAS 314
           T + +LS  +N+    +AI  F   ++   + V  L T++ +    G++  T  QF+ A 
Sbjct: 621 TGEEILSKLANEHEIARAILDFRQMVKLKSTYVDALPTMINS--KTGKIHTTYNQFVAA- 677

Query: 315 RTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
            TGR S      QN+P R  R  E                           ++ V   E 
Sbjct: 678 -TGRLSSINPNLQNIPIRTERGRE-------------------------IRKAFVPRDEN 711

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE R++A  +G++  ++AF+ G D++ TT A+ F V   +VT D R   K
Sbjct: 712 HILLAADYSQIELRIMAAFSGDESMIEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAK 771

Query: 434 VMELALGYQGGAKAF 448
                + Y  G  AF
Sbjct: 772 TANFGIIY--GISAF 784


>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
 gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
          Length = 924

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 28/144 (19%)

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPL 357
           +S GR+  T   +G + TGR S      QN+P R +   E                    
Sbjct: 646 DSQGRVHTTFHQVGTA-TGRLSSTNPNLQNIPVRTALGRE-------------------- 684

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R+  IA+ G+KL+ AD + IE R++A  + +   L A+ TG+D++  T +  F
Sbjct: 685 ------IRAAFIAAPGRKLLSADYSQIELRLMAHFSEDPLLLNAYSTGQDIHTLTASEVF 738

Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441
            VAP  + K+ R   K +   + Y
Sbjct: 739 GVAPEAMDKETRNRAKAVNFGIVY 762


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 106/485 (21%), Positives = 195/485 (40%), Gaps = 57/485 (11%)

Query: 1   MATLFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQ 55
           + T   + ET + +  D+   G+  +  ++ +I  A    + PV   E     H     +
Sbjct: 56  LVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAA--PNRPVILIEFRSITHK----E 109

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSALKAVG 113
            L+  +E+  +  V HN  FE   L     ++     WI T+++A+  + GLP  L+   
Sbjct: 110 SLRRFIEHHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDI 169

Query: 114 EALKLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +A  L     +Q ++  K+L              +RN P      R+        +  + 
Sbjct: 170 KAGVLPIPNLNQSIKNKKKLKQEL----------NRNLPGSYSLMRVAARELGYSLDKSL 219

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL------NQIVDVERTKLDQELE 223
           ++    +PL+  +++L Y     ND    V + L  T       NQ+ D  + +L     
Sbjct: 220 QVSDWGKPLT--QEQLQY---AANDA--AVVLPLRDTFRSKIIENQLADAIQVELGALAR 272

Query: 224 SLTYGLVSSSRCLEKLKTW--LFLETGLHLEDLTETTCQRVLSSNKKLT----PQAIQVF 277
               GL+     L++   W  L  E     ED  +  C+ +   + +L       +I + 
Sbjct: 273 VAQMGLMGMGLDLDR---WGELAKEIETRREDAAKIACEVLKPDHAQLNLFGGEASINLD 329

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLR-------GTLQFLGASRTGRWSGCVFPPQNLP 330
           +N    +  A L ++T   + ++  +L          +++   S+     G   P    P
Sbjct: 330 SNEQVIAALARLGIHTNSTSKDTLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNP 389

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVL 389
              R H  ++Q+         S+P+  QI  +   RSC + + G KL++AD + IE R+ 
Sbjct: 390 VTHRIHPNVNQMRAASGRFSFSNPNLQQIPRERQYRSCFVPASGYKLIIADYSQIELRIA 449

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A +   + A+   +DL+  T A        +VTK +R +GK +   L Y  GA   +
Sbjct: 450 AEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYGMGATKLR 509

Query: 450 KMAST 454
             A T
Sbjct: 510 IYAET 514


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H + +Q +T      +S+P+    P++   S  +R   +  EG +L+ AD + I
Sbjct: 703 PETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWQLISADYSQI 762

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+L  ++GE+  ++A+  G+D++  T AR   +   +VT D+R +GK +   + Y  G
Sbjct: 763 ELRILTHLSGEEVLVEAYANGDDVHALT-ARLL-LDKDEVTADERRLGKTINFGVIYGMG 820

Query: 445 AKAFQKMASTTGLN 458
           A   Q+ A  TG++
Sbjct: 821 A---QRFARETGVS 831


>gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7]
 gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
          Length = 860

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q         +SDP+ LQ I         VR+  +AS G ++V AD + 
Sbjct: 583 PRTGRVHTRYAQAAVITGRLASSDPN-LQNIPVRTPEGRRVRAAFVAS-GGQIVSADYSQ 640

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RV+A ++ ++   +AFE G+D++  T A  F  A A+V+ +QR   K +   L Y  
Sbjct: 641 IELRVMAHVSDDENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAINFGLIYGM 700

Query: 444 G 444
           G
Sbjct: 701 G 701


>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
 gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
          Length = 984

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 171/450 (38%), Gaps = 80/450 (17%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
            PV L     D   P  L+  LE+  VT +A N+ ++  VL                   
Sbjct: 446 EPVNLPPFDSDACAP--LRAMLEDPSVTKIAQNAKYDLLVL------------------- 484

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGK-----ELIARFCKGET---HECLYDRNK---P 148
            RS+G+  A   VG    L+S  ++ G+     +L+A    G T   ++ L  + K   P
Sbjct: 485 -RSSGVRVA--GVGFDTMLASYVLDPGRRSHGLDLLALEQLGHTMTAYDTLVGKGKTQLP 541

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND-----------RGY 197
                     +Y   DV +T  +  +LEP+ + E  L  L Q I              G 
Sbjct: 542 FDVAPVDTARDYSCEDVDITMRLRAKLEPMLA-EHALLSLFQEIEVPLVSVLAEMEWEGI 600

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +D+    +L      ER +++Q + +   G   +     KL+  LF + GL ++  T T
Sbjct: 601 AIDLDWFASLKARFAAERGRVEQAIYA-EAGEEFNINSNPKLRAILFEKLGLPVKKKTAT 659

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
                 S  ++L             A    VL   TL+       +L GT  ++ A    
Sbjct: 660 GPSTDASVLQEL-------------AEEGHVLP--TLLMEYREIFKLEGT--YIDA---- 698

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE 372
                  P    PR  R H    Q ++      + DP+   I     +   +R   +  E
Sbjct: 699 ------LPRLVHPRDRRLHTSYSQTVSATGRLSSHDPNLQNIPIRRELGRDIRRGFVPRE 752

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G +L+ AD + IE RVLA ++ +   + AF+ G D++  T A  F V    VT + RA  
Sbjct: 753 GWRLLSADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARA 812

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           K +  A  Y  GA A  +    T      F
Sbjct: 813 KTINFATIYGQGAHALSRQLRITNAEAKAF 842


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLYKL--------YCELEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++  KL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDAAKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKMGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA  
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAEN 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LKAF    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 31/159 (19%)

Query: 292 NTLVE-AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTS 349
           + LVE  + + GR+  +   +GAS TGR S      QN+P R S   +            
Sbjct: 686 DALVECILPATGRVHTSFSMVGAS-TGRLSSSDPNVQNIPIRTSEGRQ------------ 732

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R+  IA+EG KL+  D + IE R++A +AGEQ  ++AF+ G D++
Sbjct: 733 --------------IRTAFIAAEGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIH 778

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
             T +  F +   Q+  + R   K +   + Y  G  AF
Sbjct: 779 ARTASEVFGIPLDQMDSETRRRAKAINFGIIY--GISAF 815


>gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2]
 gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2]
          Length = 942

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +S+P+   I     +   V++   A EG   +  D + IE R
Sbjct: 667 GRVHTTYNQTITATGRLSSSNPNLQNIPTRSELGHTVKTAFSAGEGALFLAVDYSQIELR 726

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++G++  ++AF  GED +  T AR F V   +VT   R+  K +   + Y  G +A
Sbjct: 727 LLAHLSGDEHLIRAFREGEDFHAETAARVFGVPVDEVTPRLRSRAKAVNFGIVY--GQQA 784

Query: 448 F 448
           F
Sbjct: 785 F 785


>gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 542

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 11/141 (7%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382
           LPR  R H    Q +       ++DP+ LQ I         VR   +A+ G  +  AD +
Sbjct: 263 LPRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTAEGRRVREAFVAAPGCVIASADYS 321

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ +   L+AF  G D++  T A  F V   QV+ +QR   KV+   L Y 
Sbjct: 322 QIELRIMAHISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKVINFGLIY- 380

Query: 443 GGAKAFQKMASTTGLNLNTFA 463
            G  AF  +A   G++ NT A
Sbjct: 381 -GMSAF-GLARNLGID-NTAA 398


>gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08]
          Length = 920

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF +G+D +  T +  F VAP 
Sbjct: 679 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPE 738

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 739 DVSVAQRSKIKAMNYGLAY 757


>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
 gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
          Length = 902

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H   +Q +       +SDP+ LQ I         +RS  I + G  L+ AD + 
Sbjct: 623 PRTGRIHTSYNQTVAATGRLSSSDPN-LQNIPIRTEEGRKIRSAFIPAPGWLLLSADYSQ 681

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA  + ++  L+AF   ED++  T A  F V+P +VT + R   K +   + Y  
Sbjct: 682 IELRILAHCSKDEHLLEAFRDDEDIHRRTAAEMFGVSPIEVTPEMRRQAKTINFGIIYGM 741

Query: 444 G 444
           G
Sbjct: 742 G 742


>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
 gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
          Length = 927

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      +SDP+ LQ I         +R   IA     +V 
Sbjct: 644 PQMINPLSKRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPPDALIVA 702

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A +A +   L AF  G+D++  T A  F ++  +VT+DQR   K +   
Sbjct: 703 ADYSQIELRIMAHLARDPGLLNAFAAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINFG 762

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 763 LIY--GMSAF 770


>gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 987

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q +       +SDP+    P++  +   +R   +A  G  LV AD + I
Sbjct: 698 PRTKRIHASFNQTVAATGRLSSSDPNLQNIPIRTELGREIRKAFVAEPGHLLVAADYSQI 757

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ +   ++AF  G+D++    A+  +V  A+V+++QR   K++   + Y  G
Sbjct: 758 ELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKMVNFGIVY--G 815

Query: 445 AKAF 448
             AF
Sbjct: 816 VTAF 819


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA  G  +  AD + IE R++A ++ +   L+AFE G D++  T A  F V+P  
Sbjct: 688 IRAAFIAPPGHVIASADYSQIELRIMAHLSQDPALLRAFEQGLDVHRATAAEVFGVSPEH 747

Query: 424 VTKDQRAIGKVMELALGYQ----GGAKAFQKMASTT 455
           VT +QR   K +   L Y     G AKA    AS  
Sbjct: 748 VTPEQRRYAKTINFGLIYGMSPYGLAKALGIDASAA 783


>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
 gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
          Length = 916

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379
           P+ + +  R H    Q IT      ++DP+ LQ I         +R   IA +G KLV A
Sbjct: 634 PEMIQKTGRIHTSYHQAITATGRLSSTDPN-LQNIPIRSAEGRRIRQAFIAPKGYKLVAA 692

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + +E R++A ++ +   L AF    D++  T A  F V+  +VT +QR   K +   L
Sbjct: 693 DYSQVELRIMAHLSQDSGLLDAFTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGL 752

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 753 IY--GMSAF 759


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   I  +G + L+ AD + IE R++A ++G++  + AF +G D +  T AR F + P 
Sbjct: 654 IRKGFIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAARVFGLPPD 713

Query: 423 QVTKDQRAIGKVMELALGY 441
           QVT + RA  K M   L Y
Sbjct: 714 QVTPELRARIKAMNYGLAY 732


>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
 gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
          Length = 916

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G +++ AD + IE R++A ++ ++  LKAF  GED++  T A    +   Q
Sbjct: 677 IREAFIAPAGYRIISADYSQIELRIMAHISQDEGLLKAFAAGEDIHSATAAEILGIPLNQ 736

Query: 424 VTKDQRAIGKVMELALGY 441
           V ++QR   KV+   L Y
Sbjct: 737 VDQEQRRHAKVINFGLIY 754


>gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
 gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
          Length = 878

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 12/130 (9%)

Query: 329 LPR----PSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVV 378
           LPR      R H   +Q +T      +SDP+   I         +R C +   EG   V 
Sbjct: 594 LPRMRADDGRVHTHFNQTVTTTGRLSSSDPNLQNIPVRTDFGRRIRECFVPLHEGDVFVS 653

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++G++  + AF +G D +  T AR F+V   +VT   R+  K +   
Sbjct: 654 ADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVDEVTPQLRSRAKAVNFG 713

Query: 439 LGYQGGAKAF 448
           + Y  G +AF
Sbjct: 714 IVY--GQQAF 721


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARV 388
           P   R H    QI         S P+  Q+  +   R+C  A  G+ L+ AD + IE R+
Sbjct: 411 PLTGRIHPSWQQIGAESGRMSCSRPNLQQVPREPAYRACFQAPGGRVLIKADYSQIELRL 470

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A +AGE+  L+AFE GEDL+  T AR      A+ +++ R + K +   L Y  G++  
Sbjct: 471 AAQIAGEKRMLEAFEQGEDLHTLT-AR-LVTGKAEPSREDRQLAKALNFGLLYGMGSEGL 528

Query: 449 QKMA-STTGLNLN 460
           +  A +  GL L+
Sbjct: 529 RTYARANYGLELS 541


>gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF +G+D +  T +  F VAP 
Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPE 710

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLYKL--------YCELEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++  KL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDAAKLIQQSVSLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA  
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAEN 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LKAF    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+Q  + AF +G+D +  T +  F VAP 
Sbjct: 642 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPE 701

Query: 423 QVTKDQRAIGKVMELALGY 441
            V+  QR+  K M   L Y
Sbjct: 702 DVSVAQRSKIKAMNYGLAY 720


>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
 gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
          Length = 908

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA     +V AD + IE R++A ++ +   L++F  GED++  T A  F + P +
Sbjct: 669 IRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAEGEDVHRATAAEIFGMTPGE 728

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQK 450
           VT +QR   KV+   L Y   A    K
Sbjct: 729 VTSEQRRYAKVINFGLIYGMSAHGLAK 755


>gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63]
          Length = 854

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 47/266 (17%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTY---GLVSSSRCLEKLKTWLFLETGLHLE 252
           G CVD     +  +++  +     +ELE+  Y   G   +    ++L   LF   GL  +
Sbjct: 471 GVCVDRQGIESYGEMLSAQI----KELETAIYESAGCEFNINSPKQLGVVLFENLGLPCK 526

Query: 253 DLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT-----LVEAMNSDGRL 304
             T++   T   VL S +   P    V   R       + KLN+     L++ +  DGR+
Sbjct: 527 KKTKSGYSTNAEVLESLRYEHPVVEMVLRYR------TLSKLNSTYCEGLLKVIADDGRI 580

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
                    +RTGR S      QN+P  +    E+                         
Sbjct: 581 HSNFN-QTETRTGRISSTEPNLQNIPVRTELGREM------------------------- 614

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R    A +G  LV AD + IE RVLA ++G++  +KAF+  ED++  T ++ FN+    V
Sbjct: 615 RKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAITASQVFNMPLDMV 674

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQK 450
           T   R+  K +   + Y  GA +  K
Sbjct: 675 TPIMRSRAKAVNFGIVYGIGAFSLAK 700


>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
 gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
          Length = 1273

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P+  R H   +Q  T      + DP+   I     I   +R    A+ G +LVVAD + I
Sbjct: 566 PKTGRLHTRFNQTGTATGRLSSVDPNLQNIPVRTEIGRRIRKAFRAAPGMRLVVADYSQI 625

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           E RVLA ++G++  +  F  G D++  T A  F + P +V  +QR   K +
Sbjct: 626 ELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVGAEQRRAAKCL 676


>gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 893

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382
           P   R H   +Q +T      +SDP+ LQ I         VR+     EG   L+ AD +
Sbjct: 614 PDTGRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFEPGEGYDALLSADYS 672

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA M+G++  + AF  G+D++  T +  F V  A+VT  QR   K +   + Y
Sbjct: 673 QIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSAKAVNFGIVY 731


>gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured gamma proteobacterium HF0070_03O15]
          Length = 454

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 49/261 (18%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           + + SS + LEKL+  L L       D   +  +  L +    +P    +   + R  R 
Sbjct: 114 FNIKSSKQLLEKLE--LVLGYTPVNNDGKPSVAKDALKNCAADSPTIQTLMTWKRREKRR 171

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
            +++  ++ + M++DG +R +   LGA  TGR S      Q +PR S             
Sbjct: 172 QMIE--SIQDKMSNDGFVRASYMQLGAD-TGRMSSIKPNNQQIPRDSE------------ 216

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                             R CV A +G K+V AD + +E R+ A +A ++    AF+ GE
Sbjct: 217 -----------------FRQCVQAPQGWKIVDADFSQMELRLAAALAKDKNMTAAFQRGE 259

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL-NTFAHL 465
           DL+  T         A+     R I K     L Y  GA+  +K A ++G+ + N  A  
Sbjct: 260 DLHDYT---------AEQMGCDRQIAKSANFGLLYGAGAEGLRKYAGSSGVIMTNDEAVK 310

Query: 466 VKTN-----SAPEEWEDAENF 481
           ++ N     S   +W+   N+
Sbjct: 311 IRDNWLTTYSGIRDWQREMNY 331


>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
 gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
          Length = 944

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      +SDP+ LQ I         +R   IA EG +++ 
Sbjct: 661 PQMINPLTRRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFIAPEGYRILA 719

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ +   L+AF  G D++  T A  F +   +VT +QR   K +   
Sbjct: 720 ADYSQIELRIMAHLSRDAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFG 779

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 780 LIY--GMSAF 787


>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
 gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
          Length = 929

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      +SDP+ LQ I         +R   IA +G +++ 
Sbjct: 646 PQMINPLTKRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFIAPQGYQILA 704

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ +   LKAF  G D++  T A  F +   +VT +QR   K +   
Sbjct: 705 ADYSQIELRIMAHLSRDAGLLKAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINFG 764

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 765 LIY--GMSAF 772


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           L+TL   +N   GR+  +    G   TGR S      QNLP      +E           
Sbjct: 610 LDTLPTLVNPVTGRIHASYHQTGTG-TGRLSSSNPNMQNLPIKGEEGKE----------- 657

Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +R CV+  +   K++ AD + IE RVLA  + ++  + AF+ GED+
Sbjct: 658 --------------IRKCVVPQKSDWKIISADYSQIELRVLAHFSEDERLISAFKNGEDV 703

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +  T +R + V+   VT + R +GK++  ++ Y
Sbjct: 704 HALTASRLYGVSVKDVTPEMRQVGKMVNFSIIY 736


>gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58]
 gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58]
          Length = 878

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 6/134 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR------SCVIASEGKKLV 377
            P Q  P+  R H   +Q+ T        DP+   I     R      + ++  E    +
Sbjct: 595 LPRQVAPQTQRIHATFEQMGTATGRLACRDPNLQNIPKRSSRGLSLREAFLVPCETVSFL 654

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA ++ ++  L AF  GED++  T ++ F+V   QVTK QR   K +  
Sbjct: 655 AADYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKTVNF 714

Query: 438 ALGYQGGAKAFQKM 451
            + Y   A    K+
Sbjct: 715 GIIYGQQAYGLSKI 728


>gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 893

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382
           P   R H   +Q +T      +SDP+ LQ I         VR+     EG   L+ AD +
Sbjct: 614 PDTGRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFEPGEGYDALLSADYS 672

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA M+G++  + AF  G+D++  T +  F V  A+VT  QR   K +   + Y
Sbjct: 673 QIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSAKAVNFGIVY 731


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I         +R   +A  G K++  D + 
Sbjct: 644 PATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQ 702

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L AF  G+D++  T A    +   QV+ +QR   K +   L Y  
Sbjct: 703 IELRIMAHLSGDKALLDAFRHGKDIHAATAAEILGLDIEQVSSEQRRRAKAINFGLIY-- 760

Query: 444 GAKAF 448
           G  AF
Sbjct: 761 GMSAF 765


>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
 gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
          Length = 949

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q  T      +SDP+    P++  +   +R   +  +G  L+ AD A I
Sbjct: 670 PETGRLHTSFNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQI 729

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+LA M+G+      F+ G D++    AR + + P  VT +QR+  K +   + Y
Sbjct: 730 ELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPY 786


>gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 895

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+  LF E G+     T+T      +S   L  ++   F   +   R A  KL  +VE
Sbjct: 550 KQLQQVLFEELGMPKTRSTKTGYSTDAASLADLQEKSPHPFLGLLLQHRDAT-KLKQIVE 608

Query: 297 ----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
               ++  DGR+  T    G S TGR S      QN+P  +    E+             
Sbjct: 609 TLERSVTGDGRIHTTYDQTGTS-TGRISSNDPNLQNIPIRTEEGREIRS----------- 656

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                        S V   E + L+ AD + IE R++A ++ +   ++AF  GEDL+   
Sbjct: 657 -------------SFVSGGEDETLLTADYSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFV 703

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            +R F V P +VT   R   K M   L Y  G  AF
Sbjct: 704 GSRVFGVPPEEVTPLMRTKVKAMSYGLAY--GLSAF 737


>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
 gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
          Length = 904

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +       +SDP+ LQ I         +R   +AS G +L+ AD + +E 
Sbjct: 629 GRVHTSYHQAVAATGRLSSSDPN-LQNIPVRTPEGRRIRKAFVASPGHRLITADYSQVEL 687

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A ++G++   +AFE GED++  T A  F  A  +V  +QR   K +   L Y
Sbjct: 688 RIMAHLSGDEGLRRAFEQGEDIHRATAAEVF--AADEVNDEQRRAAKAINFGLIY 740


>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
 gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
          Length = 926

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q  T      +SDP+    P++  +   +R   +  +G  L+ AD A I
Sbjct: 647 PETGRLHTSFNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQI 706

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+LA M+G+      F+ G D++    AR + + P  VT +QR+  K +   + Y
Sbjct: 707 ELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPY 763


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H   +Q +T+     +S+P+ LQ I         +R   IA+EG  L+ AD + IE 
Sbjct: 617 GRVHTSYNQAVTNTGRLSSSEPN-LQNIPIRSEEGRSIRHAFIAAEGCLLLSADYSQIEL 675

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
           RVLA ++ ++    AF   ED++  T A  F + P  VT++ R   K +   + Y  GA
Sbjct: 676 RVLAHLSADRVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTINFGVIYGQGA 734


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      ++DP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 649 RVHTSYHQALTATGRLSSTDPNLQNIPIRTPIGRQIRKAFIAPEGRVLLAADYSQIELRL 708

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 709 MAHFSQDDALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 761


>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
 gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
          Length = 931

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I         +R   IA EG  +V AD + 
Sbjct: 652 PLTKRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFIAPEGYCIVAADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   LKAF  G D++  T A  F +   +VT +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSCDAGLLKAFSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G K+V AD + IE R++A ++ ++  L AF  G+D++  T +  F +   +
Sbjct: 692 IRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLDE 751

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 752 VTSEQRRSAKAINFGLIY--GMSAF 774


>gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4]
 gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4]
          Length = 899

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 11/132 (8%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIEA 386
           R H   +Q +       ++DP+ LQ I         +R   +  EG   L+ AD + IE 
Sbjct: 623 RIHTTFNQTVAATGRLSSTDPN-LQNIPVRTEDGRRIRGSFVVGEGYDCLLTADYSQIEM 681

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RV+A ++G+   ++AF TGEDL+    +R+F V   QVT + R   K M   L Y  G  
Sbjct: 682 RVMAHLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTPELRRRVKAMSYGLAY--GLS 739

Query: 447 AFQKMASTTGLN 458
           AF  +A+  G++
Sbjct: 740 AF-GLAAQLGIS 750


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 10/148 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS------ 361
           L++ G ++         P Q  P   R H +  Q +       +++P+ LQ I       
Sbjct: 648 LEYRGLAKLKSTYVDALPLQVEPATQRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTERG 706

Query: 362 -DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               ++ V   E   L+ AD + IE R++A ++ E+  ++AF+ GED++ +T ++ F+V 
Sbjct: 707 RQVRKAFVPRDENYVLLAADYSQIELRIIAALSQEETMMEAFKNGEDIHASTASKVFDVP 766

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAF 448
             +VT++QR+  K +   + Y  G  AF
Sbjct: 767 LEEVTREQRSNAKTVNFGIIY--GVSAF 792


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q +T      +S+P+ LQ I         +R   I  +G     AD + 
Sbjct: 654 PETGRIHTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCIFFSADYSQ 712

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF+ G+D++  T ++ + V   +VT++QR+  K     + Y
Sbjct: 713 IELRIMAHLSGDPHMIEAFQKGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIY 770


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 78/308 (25%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA++G KLV AD + IE RVLA MA      +AF  G D++  T +  FNV    
Sbjct: 735 IRTAFIAADGHKLVSADYSQIELRVLAHMADISQLKQAFADGIDIHAMTASEMFNVPVEG 794

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +    R   K +   + Y  G  AF  +A+  G++                  +A ++ +
Sbjct: 795 MDPSIRRQAKAINFGIIY--GISAF-GLANNLGIDRG----------------EASDYIK 835

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              E  P   I D    T      K + ++H  V  ++                    +R
Sbjct: 836 MYFERFP--GIRDYMDET------KKFAREHGYVETIFG-------------------RR 868

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
              P +   K  N      P  R+       N R+ +N   +         G   + I +
Sbjct: 869 AHYPEI---KSSN------PQMRAF------NERAAINAPIQ---------GSAADIIRR 904

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGL 661
           A++R    EG + A K    ++L VHDE++ E PD DE +A++  +  +M   P  A  L
Sbjct: 905 AMAR---MEGALAAEKLSAQMLLQVHDELIFEVPD-DEVDATIETVVKVMEDAPMPALSL 960

Query: 662 --PLKAEG 667
             PL+ + 
Sbjct: 961 SVPLQVDA 968


>gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
          Length = 950

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++A N SDGR+  T +   A+ TGR S      QN+P                   
Sbjct: 661 VQTLIDATNGSDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP------------------- 700

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
              DP   +I     RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G D 
Sbjct: 701 -NRDPAGREI-----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDF 754

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  + V   ++T DQR+  K M   L Y
Sbjct: 755 HKYVASLVYGVPVDEITSDQRSHVKAMSYGLAY 787


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q +T+     +S+P+ LQ I         +R   IA EG  ++ AD + 
Sbjct: 613 PASGRVHTSYNQTVTNTGRLSSSEPN-LQNIPVRTDEGRKIRRAFIAEEGHLILSADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA ++ ++    AF   ED++  T A  F + P  VT + R   K +   + Y  
Sbjct: 672 IELRVLAHLSEDRVFCDAFARDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQ 731

Query: 444 GAKAFQKMASTT 455
           GA +  K    T
Sbjct: 732 GAFSLAKQLGIT 743


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H + +Q +T      +S+P+    P++   S  +R   +   G +L+ AD + I
Sbjct: 726 PETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPEAGWQLISADYSQI 785

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++GE+  ++A++ G+D++  T AR   +   +V+ D+R +GK +   + Y  G
Sbjct: 786 ELRILAHLSGEEVLVQAYQQGDDVHALT-ARLL-LEKDEVSADERRLGKTINFGVIYGMG 843

Query: 445 AKAFQKMASTTGLN 458
           A   Q+ A  TG++
Sbjct: 844 A---QRFARETGVS 854


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I         +R   IA  G ++V AD + 
Sbjct: 654 PVSGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPAGYRIVAADYSQ 712

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T    F +   +VT +QR   K +   L Y  
Sbjct: 713 IELRIMAHLSQDRGLLNAFAAGKDIHRATAGEVFGLPLDKVTNEQRRSAKAINFGLIY-- 770

Query: 444 GAKAF 448
           G  AF
Sbjct: 771 GMSAF 775


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      + DP+ LQ I         +R   IA EG  ++ 
Sbjct: 649 PQMVNPLTKRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNDEGRRIRQAFIAPEGYCIMA 707

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ ++  L+AF  G+D++  T A  F V   +VT +QR   K +   
Sbjct: 708 ADYSQIELRIMAHLSQDKGLLEAFAQGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFG 767

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 768 LIY--GMSAF 775


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +       ++DP+ LQ I         VR   IA+ G  LV AD + I
Sbjct: 650 RTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRVREAFIAAPGCVLVSADYSQI 708

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  + AF  G D++  T +  F V   +VT D R   KV+   L Y  G
Sbjct: 709 ELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINFGLIY--G 766

Query: 445 AKAFQKMASTTGL 457
             AF  +A   G+
Sbjct: 767 MSAF-GLAGNLGI 778


>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 874

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382
           P   R H   +Q +T      +SDP+ LQ I         VR+     EG   L+ AD +
Sbjct: 595 PATGRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFTPGEGYDALLSADYS 653

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA M+G+   + AF  G+D++  T A  F V    VT +QR   K +   + Y
Sbjct: 654 QIELRILAHMSGDATLIDAFRQGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVY 712


>gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 937

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 25/219 (11%)

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           T G+  +    ++L+  LF    +     T+T     + S + L  Q    F   + A R
Sbjct: 578 TGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHR 637

Query: 286 SAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            A     T   L+E +  DGR+  T     A+ TGR S      QN+P  + +   +  +
Sbjct: 638 DATKLRQTVEGLLETVAPDGRIHTTYSQTAAA-TGRLSSLHPNLQNIPVRTEAGRRIRGV 696

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                            ++D V     A E   L+ AD + IE R++A ++ ++  ++AF
Sbjct: 697 F----------------VADEV-----AGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAF 735

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             GEDL+    ++ F V P +VT +QRA  K M   L Y
Sbjct: 736 REGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAY 774


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H    Q +T      ++DP+   I     I   +R   +A EG+ L+ AD + I
Sbjct: 644 PDTHRVHTSYHQALTATGRLSSTDPNLQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQI 703

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  L AF  G+D++  T A    +   +VT DQR   K +   L Y
Sbjct: 704 ELRLMAHLSQDEALLDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNFGLLY 760


>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
 gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
          Length = 935

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           ++  L F G ++         P    PR  R H   +Q +       +++P+ LQ I   
Sbjct: 629 IQTILNFRGLAKLKSTYVDALPKMVNPRTGRIHSSFNQALAATGRLSSNNPN-LQNIPVR 687

Query: 361 ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
               +   R+ +   +   L+ AD + IE R++A ++G+   L+AF+  +D++  T A+ 
Sbjct: 688 TPEGAKVRRAFIPRDDQHTLLSADYSQIELRLIADISGDVAMLEAFQNNQDIHTATAAKV 747

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           FNV    VT++QR   K +  ++ Y  GA    +  S
Sbjct: 748 FNVPFDLVTREQRYQAKTVNFSILYGAGATNLSRQLS 784


>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
 gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
          Length = 931

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + IE 
Sbjct: 655 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKIMAVDYSQIEL 713

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G+Q  L AF+ G+D++  T A        QV+ +QR   K +   L Y  G  
Sbjct: 714 RIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIY--GMS 771

Query: 447 AF 448
           AF
Sbjct: 772 AF 773


>gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12]
          Length = 894

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 35/268 (13%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   LFL+  L     T+T     +   + L+ Q  Q+ +N +   + A LK NT V+
Sbjct: 550 KQLGEILFLKLNLPTGKKTKTGFSTDVEVLEHLSSQGFQIASNLLEYRKLAKLK-NTYVD 608

Query: 297 ---AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
               M  +G    T      + TGR S      QN+P   ++ E +              
Sbjct: 609 PIPKMTGEGDRIHTCYHQIGTVTGRLSSSDPNLQNIP--VKTEEGIR------------- 653

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                     +R   IA EG KL+  D + +E RVLA ++ ++  LKA++  +DL+  T 
Sbjct: 654 ----------IRQGFIAREGWKLLSIDYSQVELRVLASLSKDENLLKAYQEKQDLHSVTA 703

Query: 414 ARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            R F +    +V+++QR + K++  ++ Y  G   F  +A   G+++      +K   A 
Sbjct: 704 KRIFELQEDEEVSREQRIMAKIINFSIIY--GKTPF-GLAKELGISVKDAGEYIKRYFA- 759

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIG 500
            ++     F R +     EH   + + G
Sbjct: 760 -QYPRVAQFERQVITFAEEHGYVETYFG 786


>gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 778

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 26/151 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L +L E ++ DGR+R T +    + TGR S      QNL  P R+ E             
Sbjct: 492 LESLEECIDGDGRIRSTFK-QNVTATGRLSSTEPNLQNL--PIRTEE------------- 535

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R    A   K L+ AD + IE RVLA +A ++   +AF    D++ 
Sbjct: 536 ----------GRKIRKAFKADNEKILIDADYSQIELRVLAHLANDKKMQEAFSHDIDIHT 585

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  FN    +VTK QR+  K +   + Y
Sbjct: 586 KTASEVFNTPIDEVTKLQRSEAKAVNFGIIY 616


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 131/316 (41%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDETLYKL--------YCEIEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++ TKL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++ + R+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDVNSRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA  
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAEN 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LKAF    D++  T A    +   +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQSLDIHSATAAEVLGIGIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
 gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
          Length = 928

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      +SDP+ LQ I         +R   IA EG  ++ 
Sbjct: 645 PQMINPLTKRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEQGRRIRQAFIAPEGYHILA 703

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ +   L+AF  G D++  T A  F +   +VT +QR   K +   
Sbjct: 704 ADYSQIELRIMAHLSRDAGLLRAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFG 763

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 764 LIY--GMSAF 771


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A +G  +V AD + IE R++A ++G+     AF+  ED++  T A  F VAP +
Sbjct: 687 VRRAFNAPDGYLIVSADYSQIELRIMAHLSGDATLQAAFQNNEDVHRRTAAEVFGVAPEK 746

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +T +QR   K +   L Y  G      +A + G++  + A  +K
Sbjct: 747 ITLEQRRYAKTINFGLIYGMGEYG---LAKSLGIDNVSAAMFIK 787


>gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
 gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
          Length = 859

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 31/169 (18%)

Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           A  KLN+     L++ +  DGR+        A RTGR S      QN+P           
Sbjct: 564 ACQKLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIP----------- 611

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           I T + + +              R+  +A  G  LV AD + IE R+LA + G+    +A
Sbjct: 612 IRTEMGSKL--------------RAYFVAKPGCVLVDADYSQIELRILAHVTGDAHMQEA 657

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           F +G D++ +T A+ +N+ P  VT   R+  K +   + Y  GA +  K
Sbjct: 658 FLSGADIHRSTAAKIYNIRPEDVTPRLRSSAKAINFGIMYGKGAYSLSK 706


>gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
          Length = 889

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 31/158 (19%)

Query: 289 LKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +KL  +V++++    SDGR+  T   + A+ TGR +      QN+P  +RS + +     
Sbjct: 595 IKLKQMVDSLSATVASDGRIHTTFSQVAAA-TGRLASSDPNLQNIP--ARSADGM----- 646

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R   +A EG + L+ AD + IE R++A ++G++  ++AF 
Sbjct: 647 ------------------RIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFN 688

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +GEDL+ T  +  F    A+V+ ++R+  K     L Y
Sbjct: 689 SGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAY 726


>gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 914

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 32/176 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           F   + A R A    + ++ L++ +  DGR+  T     A+ TGR S      QN+P  +
Sbjct: 609 FLEHLLAHRDATRLKVTVDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT 667

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392
            +  +                         +R   +  EG   L+ AD + IE R++A +
Sbjct: 668 DAGRQ-------------------------IRDGFVVGEGYDSLLTADYSQIEMRIMAHV 702

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +G++  ++AF TGEDL+    AR+F V   +VT + R   K M   L Y  G  AF
Sbjct: 703 SGDEGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAY--GLSAF 756


>gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
 gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
          Length = 887

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 36/246 (14%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A TL Q+ +    KL +ELE   YG       L   ++L   LF + GL +   T+T   
Sbjct: 508 ASTLIQLQNEFTVKL-KELEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 566

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  T
Sbjct: 567 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 623

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +   +++ +        + S+PD        + SC         
Sbjct: 624 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 662

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435
              D + +E RVLA ++G+Q   +AF+TG D++  T  + F++ +P QVT   R   K +
Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAV 719

Query: 436 ELALGY 441
              + Y
Sbjct: 720 NFGIVY 725


>gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3]
          Length = 829

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 26/157 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ +  DGR+  T +    +RTGR S      QN+P  +    E+ +  T         
Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRTPLGREMRRFFT--------- 595

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                           A +G  LV AD + IE RVLA ++G++   KAF  G D++  T 
Sbjct: 596 ----------------AKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTA 639

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           ++ FN     VT D R+  K +   + Y  GA +  K
Sbjct: 640 SQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSK 676


>gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
 gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
          Length = 888

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 27/152 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L++A+  DGR+  T     A+ TGR S      QN+P                   I
Sbjct: 600 VDGLLKAVADDGRIHTTFHQTIAA-TGRLSSTDPNLQNIP-------------------I 639

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            +D          +R   +   G  +L+ AD + IE R++A ++G++  ++AF +GEDL+
Sbjct: 640 RTDE------GRRIREGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLH 693

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
               +++F+V   +VT +QR   K M   L Y
Sbjct: 694 TFVASKAFSVPTGEVTAEQRRRVKAMSYGLAY 725


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 61/316 (19%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210
           +  +Y   D  +T  +F   + L  +++ L+ L        YC +++ L   LNQ+    
Sbjct: 462 IVAKYAAEDADITFRLFNYFKALLEQDKVLYKL--------YCELEMPLTIILNQMEKTG 513

Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257
           V ++  KL Q          ELES  Y L      L    +L+  LF + GL    + +T
Sbjct: 514 VKIDAAKLIQQSASLETSIKELESKCYNLAGQEFKLSSPVQLREILFEKLGL--PPVKKT 571

Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
              +V +S + L   A   ++    M+    + LK    + L + ++++GR+  +    G
Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                    P+  +I     R   IA  
Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAEN 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE R++A ++ ++  LKAF    D++  T A    ++  +V+ +QR   
Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725

Query: 433 KVMELALGYQGGAKAF 448
           K +   L Y  G  AF
Sbjct: 726 KAINFGLIY--GMSAF 739


>gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
          Length = 894

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +RS +   EG + L+ AD + IE R++A ++G+   ++AFE GEDL+    +  F V PA
Sbjct: 653 IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIFGVEPA 712

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
            V+   R   K M   L Y  G  AF
Sbjct: 713 DVSPAMRTKVKAMSYGLAY--GLSAF 736


>gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309]
 gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309]
          Length = 908

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 31/158 (19%)

Query: 289 LKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +KL  +V++++    SDGR+  T   + A+ TGR +      QN+P  +RS + +     
Sbjct: 614 IKLKQMVDSLSATVASDGRIHTTFSQVAAA-TGRLASSDPNLQNIP--ARSADGM----- 665

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R   +A EG + L+ AD + IE R++A ++G++  ++AF 
Sbjct: 666 ------------------RIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFN 707

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +GEDL+ T  +  F    A+V+ ++R+  K     L Y
Sbjct: 708 SGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAY 745


>gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
 gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
          Length = 903

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            + H  L+Q IT      +++P+    P++I +   +R   +  EG   V +D + IE R
Sbjct: 628 GKIHTTLNQTITATGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELR 687

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA ++G++  ++AF+ G+D++ +T +  F+    +VT  QR   K +   + Y  G  A
Sbjct: 688 VLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVY--GISA 745

Query: 448 F 448
           F
Sbjct: 746 F 746


>gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
          Length = 909

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 10/132 (7%)

Query: 329 LPRP-----SRSHEELDQIITHLPTSITSDPD--PLQIISD---CVRSCVIASEGKKLVV 378
           LPR       R H   +Q++T      +S+P+   + I S+   C+R   I  +G  ++ 
Sbjct: 625 LPRKIDLNTHRLHTSYNQVVTATGRLSSSNPNLQNIPIFSEQGSCIRGAFITGKGNVIIS 684

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++  ++ +Q  L+AF   +D++  T +  FN+   +VT + R   K +   
Sbjct: 685 ADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETASTMFNIPIDEVTSEYRRRAKAINFG 744

Query: 439 LGYQGGAKAFQK 450
           L Y   A    K
Sbjct: 745 LIYGMSAYGLAK 756


>gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a]
          Length = 829

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 26/157 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ +  DGR+  T +    +RTGR S      QN+P  +    E+ +  T         
Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRTPLGREMRRFFT--------- 595

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                           A +G  LV AD + IE RVLA ++G++   KAF  G D++  T 
Sbjct: 596 ----------------AKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTA 639

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           ++ FN     VT D R+  K +   + Y  GA +  K
Sbjct: 640 SQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSK 676


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   I ++G KL+ AD + 
Sbjct: 665 PKTGRIHTNFSQATAVTGRLASSDPN-LQNIPVRTEEGRRIREAFIPADGCKLLSADYSQ 723

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A +A ++  L AF+ G+D++  T A  F +    V  +QR   KV+   L Y  
Sbjct: 724 IELRIMAHIAEDENLLTAFKEGKDVHQATAAEIFGIPLDDVNSEQRRYAKVINFGLIY-- 781

Query: 444 GAKAFQKMASTTGL 457
           G  AF  +A   G+
Sbjct: 782 GMSAF-GLAGNLGI 794


>gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629]
 gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1]
          Length = 903

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            + H  L+Q IT      +++P+    P++I +   +R   +  EG   V +D + IE R
Sbjct: 628 GKIHTTLNQTITATGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELR 687

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA ++G++  ++AF+ G+D++ +T +  F+    +VT  QR   K +   + Y  G  A
Sbjct: 688 VLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVY--GISA 745

Query: 448 F 448
           F
Sbjct: 746 F 746


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382
           P   R H   +Q +T      +SDP+ LQ I         VR+     EG   L+ AD +
Sbjct: 595 PATGRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFTPGEGYDALLSADYS 653

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA M+G+   + AF  G+D++  T A  F V    VT +QR   K +   + Y
Sbjct: 654 QIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVY 712


>gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118]
          Length = 886

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 36/246 (14%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A TL Q+ +    KL +ELE   YG       L   ++L   LF + GL +   T+T   
Sbjct: 507 ASTLIQLQNEFAVKL-KELEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 565

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  T
Sbjct: 566 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 622

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +   +++ +        + S+PD        + SC         
Sbjct: 623 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 661

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435
              D + +E RVLA ++G+Q   +AF+TG D++  T  + F++ +P QVT   R   K +
Sbjct: 662 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAV 718

Query: 436 ELALGY 441
              + Y
Sbjct: 719 NFGIVY 724


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H   +Q++T      +++P+ LQ I         +R   +A E K+L+  D + 
Sbjct: 591 PKTERIHTSFNQLVTATGRLSSTEPN-LQNIPIRTEEGRRIRKVFVAEERKELLAVDYSQ 649

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA ++ ++  + A+  G+D++  T A  F +  ++V+  QR   K +   + Y
Sbjct: 650 IELRVLAHISQDENLIAAYREGQDIHTKTAAEVFGLEASEVSYQQRRRAKAINFGIAY 707


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G +++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPQGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +   +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 175/463 (37%), Gaps = 113/463 (24%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQV--------LKEALENTDVTIVAHNSYFERTVLKAC 83
           L   GF  HP + W   + P+  ++        +K   EN+ +    HN  ++  VL+  
Sbjct: 345 LVGIGFGIHPKKAW---YVPLNGKLGKQRVLEGVKPLFENSAIGFYGHNVKYDWHVLQ-- 399

Query: 84  FNLDIPIHRWICTLVLA--------RSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFC 134
            N  I I       +LA        R + L   AL+  G+     S+ + +GK +++   
Sbjct: 400 -NEGIQIQNICFDTILASYILNAHSRQHSLEVLALEYFGKVTIPISELIGKGKNVLSM-- 456

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN- 193
                     R+ P  R       EYC  DV  T  + + LE    KE++L  L   I  
Sbjct: 457 ----------RDVPIER-----VTEYCCEDVDFTCRLKEVLEK-QLKERDLLNLYHQIEL 500

Query: 194 ----------DRGYCVDVALAHTLNQIVDVERTKLDQELESL---TYGLVSSSRCL---E 237
                      RG  VD+     L++       +L QEL++L    Y +      L   +
Sbjct: 501 PLLVVLAKMERRGIYVDIPYLEQLSK-------ELTQELKTLQESIYTMAGEEFNLNSPK 553

Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           ++   LF++ G+     T T   T   VL   K   P A ++   R+             
Sbjct: 554 QVSELLFIKLGIPAPKKTATGHSTSAEVLEFLKNDYPLAGKILEYRLLE----------- 602

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                   +LR T  ++ A           P Q +PR  R H   +Q +       + DP
Sbjct: 603 --------KLRST--YVDA----------LPSQVIPRTHRIHSTFNQSVAATGRLSSQDP 642

Query: 355 DPLQI---------ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +   I         I    R      EG   + AD + IE R+LA ++ +   + AF+  
Sbjct: 643 NLQNIPIRTEEGRKIRGAFRP---EKEGWSFLSADYSQIELRLLAHLSQDPVLMAAFQNN 699

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           ED++  T A  F +   QV+K+QR   K +   + Y  G +AF
Sbjct: 700 EDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGIIY--GQQAF 740


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LV AD + IE R++A ++ E   ++AF+ GED++ +T ++ FNV   +VT++QR+  K +
Sbjct: 718 LVAADYSQIELRIIAALSEETTMIEAFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTV 777

Query: 436 ELALGYQGGAKAF 448
              + Y  G  AF
Sbjct: 778 NFGIIY--GVSAF 788


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   IA  G  ++ AD + IE R++A ++ +   LKAF  G D++  T +  FNV  A+
Sbjct: 698 VREAFIAPPGHVILSADYSQIELRIMAHISEDPGLLKAFAEGLDVHRATASEVFNVPVAE 757

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           V+ +QR   KV+   L Y  G  AF  +AS  G+
Sbjct: 758 VSSEQRRYAKVINFGLIY--GMGAF-GLASNLGI 788


>gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 103

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1  MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
          M  + ID +T S +++TKCG  KYAE  +  ++LF    D  PV ++D      +P+ + 
Sbjct: 2  MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61

Query: 59 EALENTDVTIVAHNSYFERTVL 80
           AL + +VT  A N+ FER  L
Sbjct: 62 AALSDENVTKWAFNASFERVCL 83


>gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
 gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
          Length = 932

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 32/210 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L+  LF E GL ++  T+T   T Q VL     L P   ++   R  A       L++
Sbjct: 588 KQLREVLFDEIGLPVQKRTKTGPSTDQSVLEKLAPLHPLPAKIIEYRQLAKLKGTY-LDS 646

Query: 294 LVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           L + +N   GR+  +   + A+ TGR S      QN+P                      
Sbjct: 647 LPKLINQQTGRIHASFNQVVAA-TGRLSSSDPNLQNIP--------------------IR 685

Query: 353 DPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            P+  Q     VR   I  E G +L+  D + IE RVLA  +G+    +AF++G+D++  
Sbjct: 686 TPEGRQ-----VRKAFIPGEPGWELLCCDYSQIELRVLAHFSGDAALQEAFQSGKDIHTA 740

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             A  F V  A V  D R + K +   + Y
Sbjct: 741 VAAEVFEVDEANVDSDMRRVAKAVNFGVIY 770


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 15/173 (8%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      +SDP+ LQ I         +R   IA  G +LV AD + IE R
Sbjct: 629 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRSTEGRRIRQAFIAPPGYRLVAADYSQIELR 687

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++ ++  L AFE  ED++  T    F      VT +QR   K +   L Y   A  
Sbjct: 688 IMAHLSEDEGLLAAFEAEEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAHG 747

Query: 448 FQKMASTTGLNLNTFAHLVKT--NSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
              +    G+N     H ++      P      EN C   Q+   +  +E LF
Sbjct: 748 ---LGRQLGINRTAAQHYIERYFQRYPGVKAYMENIC---QQARQKGYVETLF 794


>gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
 gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
          Length = 903

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 29/156 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++A+  DGR+  T +    + TGR S      QN+P   R+ E                
Sbjct: 618 LIKAVGPDGRIHTTFR-QDVAATGRLSSTDPNLQNIP--VRTEE---------------- 658

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                  +  +R   +  EG + L+ AD + IE R++A ++G++  ++AF TGEDL+   
Sbjct: 659 -------ARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFV 711

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            +R+F V   QV  + R   K M   L Y  G  AF
Sbjct: 712 ASRAFGVPIDQVGAELRRRVKAMSYGLAY--GLSAF 745


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 11/133 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIE 385
            R H   +Q++       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 629 GRIHTTFNQMVAATGRLSSTDPN-LQNIPIRTAEGRQIREGFVVGEGYECLLTADYSQIE 687

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  ++AF +G D +  T +R F + P Q+  + RA  K M   L Y  G 
Sbjct: 688 LRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIKAMNYGLAY--GL 745

Query: 446 KAFQKMASTTGLN 458
             F  +AS  G+ 
Sbjct: 746 SPF-GLASQLGIT 757


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+    H   +Q  T      +SDP+ LQ I         +R C I +EG     AD + 
Sbjct: 643 PKTGNIHTSFNQATTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPNEGCLFFSADYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G++  ++AF  G D++  T A+ +     +VT+D+R   K     + Y
Sbjct: 702 IELRIMAHLSGDENMIEAFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIY 759


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      +SDP+ LQ I         +R   IA +G  ++ AD + IE 
Sbjct: 680 GRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIEL 738

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A +A +   +KAF  G+D++ +T A  F V    VT +QR   K +   L Y
Sbjct: 739 RIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIY 793


>gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 914

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 637 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIE 695

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  + AF +GEDL+ T     FNV PA V  + R   K M   L Y  G 
Sbjct: 696 LRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPAAVDAEMRRKIKAMSYGLAY--GL 753

Query: 446 KAF 448
            AF
Sbjct: 754 SAF 756


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      +SDP+ LQ I         +R   IA +G  ++ AD + IE 
Sbjct: 680 GRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIEL 738

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A +A +   +KAF  G+D++ +T A  F V    VT +QR   K +   L Y
Sbjct: 739 RIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIY 793


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 30/186 (16%)

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330
           A+Q   +  +A+++    ++ L E +NS  G++  +L   GA  +GR+S C  P  Q +P
Sbjct: 403 AVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 460

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389
           R  R                            C V S  +A    K ++AD + IE R+ 
Sbjct: 461 RERR-------------------------FRACFVPSKTVAGRPGKFIIADFSQIELRIA 495

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A ++  ++A+  GEDL+  T +   N  P+ ++K  R + K +   L Y   A  F+
Sbjct: 496 ADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFR 555

Query: 450 KMASTT 455
             AS+ 
Sbjct: 556 GYASSA 561


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 38/211 (18%)

Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF   GL     T+T   T  RVL S +   P    +   R          L+T 
Sbjct: 544 QLAVVLFERLGLPAGRKTKTGYSTDARVLESLRDAHPIVAAILRFRELDK-----LLSTF 598

Query: 295 VEAMNS----DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            E + S    DGR+  T      +RTGR S      QN+P   R+ E             
Sbjct: 599 YEGLRSEIGADGRIHATFN-QAVARTGRISSERPNLQNIP--VRTDE------------- 642

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                         R   +A+EG  LV AD + IE RVLA ++G++  ++      D++ 
Sbjct: 643 ----------GKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHT 692

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
              AR F V   +VT  QR++ K++   L Y
Sbjct: 693 LVAARVFGVPAERVTPQQRSVAKMVTYGLSY 723


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 30/186 (16%)

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330
           A+Q   +  +A+++    ++ L E +NS  G++  +L   GA  +GR+S C  P  Q +P
Sbjct: 403 AVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 460

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389
           R  R                            C V S  +A    K ++AD + IE R+ 
Sbjct: 461 RERR-------------------------FRACFVPSKTVAGRPGKFIIADFSQIELRIA 495

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A ++  ++A+  GEDL+  T +   N  P+ ++K  R + K +   L Y   A  F+
Sbjct: 496 ADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFR 555

Query: 450 KMASTT 455
             AS+ 
Sbjct: 556 GYASSA 561


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   +A  G  +  AD + IE R++A ++G+   L AF  G D++  T +  F V  AQ
Sbjct: 718 VREAFVAPPGSVIASADYSQIELRIMAHISGDAALLLAFHDGIDVHRATASEIFGVDRAQ 777

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           VT +QR   KV+   L Y   A    K  S
Sbjct: 778 VTSEQRRYAKVINFGLIYGMSAYGLAKALS 807


>gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 627

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 16/251 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380
           P  +   SR H   +QI T      +SDP+    P++      +R   +A  GK L+  D
Sbjct: 344 PLLVDENSRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSID 403

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELAL 439
            + +E RVL  M+ ++  ++A+   +DL+  T  R FN++  + V+++QR I K++  ++
Sbjct: 404 YSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDTETVSREQRTIAKIINFSI 463

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G   F  +A    + +   +  +K     E++    +F R + E   EH     ++
Sbjct: 464 IY--GKTPFG-LAKELKIPVKDASEYIK--KYFEQYPKVTSFEREVIEFGEEHG----YV 514

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T   R K+      S+   + ++  +    T+  G A    K+  V +  + KDK ++ 
Sbjct: 515 KTLFGR-KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIT 573

Query: 560 LMLPSGRSLVY 570
           L+L     L++
Sbjct: 574 LLLQVHDELIF 584


>gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 911

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   I +  K  +  D + IE RVLA M+ E   + AF    D+++      FN++  Q
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +T +QR I KV    + Y  G   F  +AS   +++N    ++K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNISVNQAKQMIK 761


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 30/186 (16%)

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330
           A+Q   +  +A+++    ++ L E +NS  G++  +L   GA  +GR+S C  P  Q +P
Sbjct: 403 AVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 460

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389
           R  R                            C V S  +A    K ++AD + IE R+ 
Sbjct: 461 RERR-------------------------FRACFVPSKTVAGRPGKFIIADFSQIELRIA 495

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A ++  ++A+  GEDL+  T +   N  P+ ++K  R + K +   L Y   A  F+
Sbjct: 496 ADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFR 555

Query: 450 KMASTT 455
             AS+ 
Sbjct: 556 GYASSA 561


>gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684]
 gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684]
          Length = 884

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q+        +++P+    P++  +   +R+C +A  G  L+ AD + +
Sbjct: 606 PEDHRLHTTFNQVTAATGRLSSTNPNLQNIPIRTPLGREIRACFVAEPGNVLISADYSQV 665

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA +AGE+   + F  GED++  T A    + P Q+    R+  K++   + Y  G
Sbjct: 666 ELRVLAHIAGEEVLKEIFRRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVY--G 723

Query: 445 AKAF 448
             AF
Sbjct: 724 LSAF 727


>gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
 gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
          Length = 912

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 16/244 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387
           SR H   +QI T      +SDP+    P++      +R   +A  GK L+  D + +E R
Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELR 695

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446
           VL  M+ ++  ++A+   +DL+  T  R FN++ ++ V+++QR I K++  ++ Y  G  
Sbjct: 696 VLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            F  +A    + +   +  +K     E++    +F R + E   EH     ++ T   R 
Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPKVTSFEREVIEFGEEHG----YVKTLFGR- 805

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K+      S+   + ++  +    T+  G A    K+  V +  + KDK  + L+L    
Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQVHD 865

Query: 567 SLVY 570
            L++
Sbjct: 866 ELIF 869


>gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
 gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
          Length = 912

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 16/244 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387
           SR H   +QI T      +SDP+    P++      +R   +A  GK L+  D + +E R
Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELR 695

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446
           VL  M+ ++  ++A+   +DL+  T  R FN++ ++ V+++QR I K++  ++ Y  G  
Sbjct: 696 VLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            F  +A    + +   +  +K     E++    +F R + E   EH     ++ T   R 
Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPKVTSFEREVIEFGEEHG----YVKTLFGR- 805

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K+      S+   + ++  +    T+  G A    K+  V +  + KDK  + L+L    
Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQVHD 865

Query: 567 SLVY 570
            L++
Sbjct: 866 ELIF 869


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H    Q +       ++DP+ LQ I         VR   +A  G  +  AD + 
Sbjct: 666 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPVKTAEGRRVREAFVAPAGSVIASADYSQ 724

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++ ++  L+AF  G D++  T A  F VA  QV+ +QR   KV+   L Y
Sbjct: 725 IELRIMAHLSEDEALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIY 782


>gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 932

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++A N SDGR+  T +   A+ TGR S      QN+P                   
Sbjct: 643 VQTLIDATNRSDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP------------------- 682

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
              DP   +I     RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G D 
Sbjct: 683 -NRDPAGREI-----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDF 736

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  + V   ++T DQR+  K M   L Y
Sbjct: 737 HKYVASLVYGVPVDEITPDQRSHVKAMSYGLAY 769


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 36/198 (18%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T  +VLSS   + P  + +    +R  +    K   + E +  D RL    + +GA  T
Sbjct: 266 STDDKVLSSYAHVEPVRLLL---EIRKLKKLSDKFKEIKENLKGD-RLYPEFKQIGAV-T 320

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+PR  R+                                  A EG   
Sbjct: 321 GRMSSLKPNVQNVPREERA-------------------------------IFKAPEGNTF 349

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V+AD + IE R+ A    E+  ++AF  G+DL+  T +        ++TK++R + K + 
Sbjct: 350 VIADFSQIELRIAAEYVNEELMIRAFREGKDLHRYTASLVLGKREEEITKEERQLAKAIN 409

Query: 437 LALGYQGGAKAFQKMAST 454
             L Y   AK   + A T
Sbjct: 410 FGLIYGISAKGLAEYART 427


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P +  P+ +R H   +Q +T      +S+P+ LQ I         +R+  IA E   ++
Sbjct: 609 LPKKINPKTNRVHTSYNQAVTATGRLSSSEPN-LQNIPIRSEEGRLIRTAFIAPEDNIIL 667

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  LKAF  G D++  T +  F +   ++  +QR   K +  
Sbjct: 668 AADYSQIELRIMAHLSQDENLLKAFANGWDVHAATASEIFQIPLEEINNEQRRRAKAINF 727

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT--NSAPEEWEDAENFCRWMQENHPEHAIE 495
            L Y  G  +F  +A   G+      + + T     P+     E   R  Q+ H +  +E
Sbjct: 728 GLIY--GMSSF-GLAKQIGVERQDAQYYIDTYFQRYPKVL---EYMNRTRQQAHHQGYVE 781

Query: 496 DLF 498
            LF
Sbjct: 782 TLF 784


>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4]
 gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4]
          Length = 918

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       +SDP+ LQ I         +R   +A  G  +V AD + 
Sbjct: 640 PTTGRVHTSYSQAVAVTGRLSSSDPN-LQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQ 698

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L AF  GED++  T A  F V    V+ +QR   KV+   L Y  
Sbjct: 699 IELRIMAHLSQDDGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIY-- 756

Query: 444 GAKAF 448
           G  AF
Sbjct: 757 GMSAF 761


>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 924

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 27/194 (13%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           + L E +N + +   T   L A+ TGR +      QN+P  S   ++             
Sbjct: 632 DALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGKD------------- 678

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   IA +G  L+ AD   IE R+LA +A  +   KAF   ED++  
Sbjct: 679 ------------IRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDIHSL 726

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTN 469
           T ++ FNV   +V +D R   K +   + Y        K  + +    + F  A+ +K  
Sbjct: 727 TASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNAYFLKFP 786

Query: 470 SAPEEWEDAENFCR 483
                 ++   FCR
Sbjct: 787 EIKIYMDNTIKFCR 800


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 10/131 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+    P++   S  +R   +  E  KL+ AD + IE R
Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLLSADYSQIELR 754

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +L  ++GE+   +AF  G+D++  T AR   +   +V++D+R +GK +   + Y  GA+ 
Sbjct: 755 ILTHLSGEEVLQEAFRNGDDVHALT-ARLL-LDKDEVSEDERRLGKTINFGVIYGMGAQR 812

Query: 448 FQKMASTTGLN 458
           F +   +TGL+
Sbjct: 813 FSR---STGLS 820


>gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 911

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   I +  K  +  D + IE RVLA M+ E   + AF    D+++      FN++  Q
Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +T +QR I KV    + Y  G   F  +AS   +++N    ++K
Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNISVNQAKQMIK 761


>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
 gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
          Length = 918

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +       +SDP+ LQ I         +R   +A  G  +V AD + 
Sbjct: 640 PTTGRVHTSYSQAVAVTGRLSSSDPN-LQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQ 698

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L AF  GED++  T A  F V    V+ +QR   KV+   L Y  
Sbjct: 699 IELRIMAHLSQDDGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIY-- 756

Query: 444 GAKAF 448
           G  AF
Sbjct: 757 GMSAF 761


>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
 gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
          Length = 910

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 41/273 (15%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLN-QIVDVERTKLDQELESLTYGLVSSSRCL 236
           L+  E  L  +  T+ + G  VD      L  Q  D    K+ Q  E+  YG++     L
Sbjct: 507 LTDMELPLLGVLATLEEAGIAVDCEQLEALQRQFAD----KVAQAAEA-AYGVIGKQINL 561

Query: 237 ---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LK 290
              ++L+  LF E  +     T+T       + + L  +    F   + A R A    + 
Sbjct: 562 GSPKQLQVVLFDELDMPKTKRTKTGYTTDADALESLFEKTQHPFLEHLLAHRDATRLKVT 621

Query: 291 LNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++ L++++  DGR+  T  Q + A  TGR S      QN+P                   
Sbjct: 622 VDGLLKSVADDGRIHTTFNQTIAA--TGRLSSTEPNLQNIP------------------- 660

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           I +D          +R   +   G  +L+ AD + IE R++A ++G++  ++AF +GEDL
Sbjct: 661 IRTD------TGRMIRDTFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNSGEDL 714

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +++F++  A+V+ + R   K M   L Y
Sbjct: 715 HSFVASKAFDIPIAEVSPELRRRIKAMSYGLAY 747


>gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
 gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
          Length = 880

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      ++DP+   I     +   +R   IA EG  L+ AD + IE R
Sbjct: 605 GRIHGTFNQTITATGRISSTDPNLQNIPVRTELGRLLRKVFIAKEGYVLIDADYSQIELR 664

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA M+G++  + AF    D++  T ++ F++   +VT  QR   K +   + Y  G  A
Sbjct: 665 VLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEVTPLQRRNAKAVNFGIVY--GISA 722

Query: 448 F 448
           F
Sbjct: 723 F 723


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++ V   E   L+ AD + IE R++A ++ E   ++AF+ G D++ +T +R FNV   +V
Sbjct: 705 KAFVPRDENYVLLAADYSQIELRIIAALSKEDTMMQAFKDGADIHASTASRVFNVPLEEV 764

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           T++QR+  K +   + Y  G  AF  +++ T L  +    L+ T
Sbjct: 765 TREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLTRSESKELIDT 805


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 30/186 (16%)

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330
            A+Q   +  +A+++    ++ L E +NS  G++  +L   GA  +GR+S C  P  Q +P
Sbjct: 2278 AVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 2335

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389
            R  R                            C V S  +A    K ++AD + IE R+ 
Sbjct: 2336 RERR-------------------------FRACFVPSKTVAGRPGKFIIADFSQIELRIA 2370

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A +A ++  ++A+  GEDL+  T +   N  P+ ++K  R + K +   L Y   A  F+
Sbjct: 2371 ADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFR 2430

Query: 450  KMASTT 455
              AS+ 
Sbjct: 2431 GYASSA 2436


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
          Length = 921

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F     +
Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763


>gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
 gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
          Length = 946

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +RS  +   G   + AD A IE  VLA + G++   +AF  G+D++  T +  FNV P  
Sbjct: 707 IRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREAFLAGQDVHRHTASLIFNVKPED 766

Query: 424 VTKDQRAIGKVMELALGY 441
           VT DQR I K +   + Y
Sbjct: 767 VTPDQRRIAKTINFGVMY 784


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F     +
Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763


>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 924

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 27/194 (13%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           + L E +N + +   T   L A+ TGR +      QN+P  S   ++             
Sbjct: 632 DALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGKD------------- 678

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   IA +G  L+ AD   IE R+LA +A  +   KAF   ED++  
Sbjct: 679 ------------IRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDIHSL 726

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTN 469
           T ++ FNV   +V +D R   K +   + Y        K  + +    + F  A+ +K  
Sbjct: 727 TASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNAYFLKFP 786

Query: 470 SAPEEWEDAENFCR 483
                 ++   FCR
Sbjct: 787 EIKIYMDNTIKFCR 800


>gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 933

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG +LV  D + IE RVLA ++ +   +KAF  G D++  T A  F V  A+
Sbjct: 694 IRRGFVAPEGMQLVTLDYSQIELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAE 753

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR + K +   + Y  G  AF
Sbjct: 754 VTSEQRRVAKAVNFGVIY--GQSAF 776


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
          Length = 921

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F     +
Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763


>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
 gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
          Length = 918

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 127/311 (40%), Gaps = 54/311 (17%)

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWY--------LDQTIND---RGYCVDVALAHT 206
           G Y   D  +T  + + L P   KE EL          L + ++D   +G  +D  L   
Sbjct: 484 GPYAAEDADITLRLHQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSML--- 540

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTE----TTC 259
           L+Q       KLD +LE+  Y +      L   ++L+T  F + G  ++  T     +T 
Sbjct: 541 LSQQSGELAKKLD-DLENKAYEIAEEKFNLASPKQLQTLFFEKLGYPIKKKTPKGAPSTA 599

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVL--KLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           + VL       P    +  +R  A   +    KL  +V A  + GR+  +     A+ TG
Sbjct: 600 EDVLIELALDYPLPKVILEHRSLAKLKSTYTDKLPLMVNA--TTGRVHTSYHQANAA-TG 656

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P   R+ E                          +R   IA  G+K++
Sbjct: 657 RLSSSEPNLQNIP--IRTEE-----------------------GRRIRQAFIAPAGRKIL 691

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ +   L AF  G+D++  T A  F V   +VT +QR   K +  
Sbjct: 692 AADYSQIELRIMAHLSQDAGLLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNF 751

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 752 GLIY--GMSAF 760


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G +++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +   +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDEGLLAAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H + +Q +T      +S+P+    P++   S  +R   +  EG  L+ AD + I
Sbjct: 696 PETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWSLISADYSQI 755

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+L  + GE+  ++A+  G+D++  T AR   +    VT D+R +GK +   + Y  G
Sbjct: 756 ELRILTHLCGEEVLVEAYRNGDDVHALT-ARLL-LDKEAVTPDERRLGKTINFGVIYGMG 813

Query: 445 AKAFQKMASTTGLN 458
           A   Q+ A  TG++
Sbjct: 814 A---QRFARETGVS 824


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F     +
Sbjct: 695 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 754

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 755 VTTEQRRRAKAVNFGLIY--GMSAF 777


>gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183]
 gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175]
 gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183]
 gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175]
          Length = 921

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F     +
Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763


>gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 911

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 16/244 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387
           SR H   +QI T      +S+P+    P++      +R   IA EGK L+  D + +E R
Sbjct: 635 SRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELR 694

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446
           VL  M+ ++  ++A+   +DL+  T  R FN+  ++ V+++QR I K++  ++ Y  G  
Sbjct: 695 VLTSMSKDENLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIY--GKT 752

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            F  +A    + +   +  +K     E++     F + + E   EH     ++ T   R 
Sbjct: 753 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTTFEKEVIEFGEEHG----YVKTLFGR- 804

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K+      S+   + ++  +    T+  G A    K+  V +  + KDK ++ L+L    
Sbjct: 805 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHD 864

Query: 567 SLVY 570
            L++
Sbjct: 865 ELIF 868


>gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
 gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
          Length = 829

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 26/157 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ +  DGR+  T +    +RTGR S      QN+P  +    E+ +  T         
Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRTPLGREMRRFFT--------- 595

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                           A +G  LV AD + IE RVLA ++G++   KAF  G D++  T 
Sbjct: 596 ----------------AKDGCLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTA 639

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           ++ FN     VT D R+  K +   + Y  GA +  K
Sbjct: 640 SQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSK 676


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +T      ++DP+ LQ I         +R   +A +G +++ 
Sbjct: 674 PQMINPHTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVARDGYRIIA 732

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++    AF  G D++ +T +  F +    V+ +QR   K +   
Sbjct: 733 ADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQRRSAKAINFG 792

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 793 LIY--GMSAF 800


>gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478]
          Length = 900

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 32/210 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNT 293
           ++L+  LF E G+     T+T       + + L  +    F   + A R      + ++ 
Sbjct: 555 KQLQVVLFDELGMPKTKRTKTGYTTDADAVQGLFEKTGHPFLQHLLAHRDVTRLKVTVDG 614

Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           L+ ++ +DGR+  T  Q + A  TGR S      QN+P                   I +
Sbjct: 615 LLNSVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP-------------------IRT 653

Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           D          +R   +   G  +L+ AD + IE R++A ++G++  ++AF TGEDL+  
Sbjct: 654 DA------GRQIRDAFVVGAGYSELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSF 707

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             +R+F V   +VT + R   K M   L Y
Sbjct: 708 VASRAFGVPIDEVTGELRRRVKAMSYGLAY 737


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + IE 
Sbjct: 656 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIEL 714

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G++  L+AF+ G+D++  T A    V    VT +QR   K +   L Y  G  
Sbjct: 715 RIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNFGLIY--GMS 772

Query: 447 AFQKMASTTGLNLNTFAHLVKT 468
           AF  +A   G+      H + T
Sbjct: 773 AF-GLAKQLGIPRGEAQHYMDT 793


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A++G KL+ AD A IE  +LA  + ++  +KAF  G D++  T A  FNV    
Sbjct: 712 IRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAFRQGTDVHAATAALIFNVPVEN 771

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449
           V  D R I KV+   + Y  G  AF+
Sbjct: 772 VVPDMRRIAKVINFGVMY--GMSAFR 795


>gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 899

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 31/158 (19%)

Query: 289 LKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +KL   VE +     +DGR+  T Q   A+ TGR S      QN+P  +R+ E +     
Sbjct: 605 IKLRQTVEGLRKAVLADGRIHTTFQQTVAA-TGRLSSTDPNLQNIP--ARTEEGMR---- 657

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R      +G++ L+ AD + IE R++A ++G+Q  + AF 
Sbjct: 658 -------------------IREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFR 698

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +GEDL+    A    +  A VT +QR+  K M   L Y
Sbjct: 699 SGEDLHRYVAAMVHGIDVADVTAEQRSHVKAMSYGLAY 736


>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 911

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 16/244 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387
           SR H   +QI T      +S+P+    P++      +R   IA EGK L+  D + +E R
Sbjct: 635 SRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELR 694

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446
           VL  M+ ++  ++A+   +DL+  T  R FN+  ++ V+++QR I K++  ++ Y  G  
Sbjct: 695 VLTSMSKDENLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIY--GKT 752

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            F  +A    + +   +  +K     E++     F + + E   EH     ++ T   R 
Sbjct: 753 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTTFEKEVIEFGEEHG----YVKTLFGR- 804

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K+      S+   + ++  +    T+  G A    K+  V +  + KDK ++ L+L    
Sbjct: 805 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHD 864

Query: 567 SLVY 570
            L++
Sbjct: 865 ELIF 868


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H   +Q +       +SDP+ LQ I         +R   IA  G  +V AD + IE 
Sbjct: 667 GRVHTNYNQAVAITGRLASSDPN-LQNIPVRTAEGRRIREAFIAPPGSHIVSADYSQIEL 725

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++ +   L+AF   ED++  T A  F V  + V  +QR   KV+   L Y  G  
Sbjct: 726 RIMAHLSKDAGMLQAFANNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIY--GMS 783

Query: 447 AF 448
           AF
Sbjct: 784 AF 785


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I      S  +R   +  EG  L+ AD + IE 
Sbjct: 707 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIEL 765

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+ TG+D++  T AR   +   +V+ DQR +GK +   + Y  GA 
Sbjct: 766 RILTHLSGEEVLQEAYRTGDDVHALT-ARLL-LDKDEVSADQRRLGKTINFGVIYGMGA- 822

Query: 447 AFQKMASTTGLN 458
             Q+ A  TG++
Sbjct: 823 --QRFARETGVS 832


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      +SDP+ LQ I       
Sbjct: 622 LEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEG 680

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G++  L AF  G+D++  T A   ++  
Sbjct: 681 RRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDI 740

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            +V+ +QR   K +   L Y  G  AF
Sbjct: 741 EEVSSEQRRRAKAINFGLIY--GMSAF 765


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           L++L E +N   GR+  +    G   TGR S      QNLP      +E           
Sbjct: 611 LDSLPELVNKVTGRIHTSYHQTGTG-TGRLSSSNPNMQNLPIRDEEGKE----------- 658

Query: 350 ITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +R CVI  + G K+V AD + IE R+LA ++ ++  L AF+  +D+
Sbjct: 659 --------------IRKCVIPQKKGWKIVSADYSQIELRILAHLSQDKQLLDAFKNDKDV 704

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +  T +  + +  ++V+++QR IGK++  ++ Y
Sbjct: 705 HSLTASNLYGIKESEVSEEQRRIGKMINFSIIY 737


>gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
 gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
          Length = 848

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
           C+ A  G   V AD + IE RVLA ++GE+   + FE G D++  T A    +    VTK
Sbjct: 615 CLTAGPGGVFVAADYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMILGIPADSVTK 674

Query: 427 DQRAIGKVMELALGYQGGAKAF 448
           +QR + K +   L Y  G  AF
Sbjct: 675 EQRRMAKTVTFGLLY--GMSAF 694


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 16/181 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q +T      +S+P+   I      S  +R   I  E   LV AD + I
Sbjct: 680 PDTQRVHTNFNQTVTATGRLSSSNPNLQNIPIRTEFSRKIRQAFIPQENWLLVSADYSQI 739

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E   L+A+   +D++  T    F+     +T  +R +GK +   + Y  G
Sbjct: 740 ELRILAHLSQEVVLLEAYRNNQDVHSVTAKLLFD--KETITPQERNLGKTINFGVIYGMG 797

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A+ F + A  +     TF      N   + +    ++   M+    + AI D F+ T   
Sbjct: 798 AQRFAREAGVSAAEGKTF-----INKYRQRYAKVFDYLERMK----KEAIADGFVTTILG 848

Query: 505 R 505
           R
Sbjct: 849 R 849


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 10/131 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q IT      +S P+   I      S  +R   I   G  LV AD + IE R+
Sbjct: 671 RIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRI 730

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ E+  ++A+ T +D++  T    F+    ++T D+R +GK++   + Y  G++ F
Sbjct: 731 LAHLSQEKMLIEAYNTNQDVHSLTAQLLFD--KDEITADERRLGKIINFGVIYGMGSQRF 788

Query: 449 QK---MASTTG 456
            +   +++T G
Sbjct: 789 AREVGVSATAG 799


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 10/133 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+    P++   S  +R   I  EG  L  AD + IE R
Sbjct: 660 GRVHTDFNQTVTATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQEGWLLTAADYSQIELR 719

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++ E   L+ F +GED++  T AR   +   ++T ++R + K +   + Y  GA  
Sbjct: 720 ILAHLSQEPALLEGFRSGEDVHTLT-ARLL-LEKQEITSEERRLAKTINYGVIYGMGA-- 775

Query: 448 FQKMASTTGLNLN 460
            Q+ A T G++L+
Sbjct: 776 -QRFARTAGVSLS 787


>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
 gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
          Length = 891

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H   +Q +       +++P+ LQ I         VR   I++ G KL+ AD + 
Sbjct: 614 PKDGRVHTTFEQAVAVTGRLSSTNPN-LQNIPIRTEEGRKVREAFISASGCKLISADYSQ 672

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++ ++  ++AF+  ED++  T A  F     +VT + R I KV+   L Y
Sbjct: 673 IELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMY 730


>gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
 gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
          Length = 857

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 26/157 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           +++ +  DGR+         +RTGR S      QN+P  +    EL              
Sbjct: 573 MLKVIGPDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRTELGREL-------------- 617

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                      R   +A EG  LV AD + IE RVLA +A ++  +KAF+  ED++  T 
Sbjct: 618 -----------RKFFLAKEGWVLVDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITA 666

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           ++ F + P  VT   R+  K +   + Y  GA +  K
Sbjct: 667 SQVFGMPPEMVTPLMRSRAKAVNFGIVYGIGAFSLSK 703


>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
 gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
          Length = 886

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++A+ SDGR+  T     AS TGR S      QN+P  ++                
Sbjct: 598 LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTQDGRR------------ 644

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 645 -------------IRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLH 691

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F V   QVT + R   K M   L Y  G  AF
Sbjct: 692 NYVGSRVFEVPVDQVTPELRRRVKAMSYGLVY--GLSAF 728


>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 923

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      +SDP+ LQ I         +R   IA +G K++  D + 
Sbjct: 644 PATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPQGYKVLAIDYSQ 702

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++  L AF  G+D++  T A    +   QV+ +QR   K +   L Y  
Sbjct: 703 IELRIMAHLSGDKALLDAFCHGKDIHAATAAEILGLPLDQVSSEQRRRAKAINFGLIY-- 760

Query: 444 GAKAF 448
           G  AF
Sbjct: 761 GMSAF 765


>gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6]
          Length = 861

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 31/169 (18%)

Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           A  KLN+     L++ +  DGR+        A RTGR S      QN+P           
Sbjct: 566 AYQKLNSTYVEGLLKVIAEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIP----------- 613

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           I T L + +              R+  +A  G  LV AD + IE R+LA + G++   +A
Sbjct: 614 IRTELGSQL--------------RAYFVARPGCVLVDADYSQIELRILAHVTGDEHMQQA 659

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           F TGED++ +T A+ + +   QVT   R+  K +   + Y  GA +  K
Sbjct: 660 FLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAINFGIMYGKGAYSLSK 708


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      ++DP+   I     I   +R   IA +G+ L+ AD + IE R+
Sbjct: 649 RVHTSYHQALTATGRLSSTDPNLQNIPVREEIGRQIRKAFIAPQGRVLLAADYSQIELRL 708

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + ++  + AF+ G+D++  T A    VA   VT DQR   K +   L Y
Sbjct: 709 MAHFSQDEALVDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQAKAVNFGLLY 761


>gi|227489383|ref|ZP_03919699.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090561|gb|EEI25873.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 60

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           + R  TYGGKL ENIVQAV+RD+L   M    +AG+ IV+ V DE V
Sbjct: 2   IPRLETYGGKLVENIVQAVARDLLVRAMTLVAQAGHKIVMHVRDEPV 48


>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
 gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
          Length = 950

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H   +Q +       +++P+ LQ I         VR   I++ G KL+ AD + 
Sbjct: 673 PKDGRVHTTFEQAVAVTGRLSSTNPN-LQNIPIRTEEGRKVREAFISASGCKLISADYSQ 731

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++ ++  ++AF+  ED++  T A  F     +VT + R I KV+   L Y
Sbjct: 732 IELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMY 789


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G +++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +   +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
 gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
          Length = 875

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 26/160 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ +V+ +  DG++  T Q    ++TGR S      QN+P   R+ E             
Sbjct: 589 IDGMVDLIKKDGKIHTTFQ-QTIAQTGRISSTNPNLQNIP--IRTEE------------- 632

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   + S G  L+ AD + IE RVLA +A ++  + AF+ G D++ 
Sbjct: 633 ----------GRLIRKAFVPSGGNVLLDADYSQIELRVLADLANDEVMIDAFKHGADIHR 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            T +  F V   +VT  QR+  K +   + Y  G  +  K
Sbjct: 683 KTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSLSK 722


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++ V   E   L+ AD + IE R++A ++ E+  + AF+ GED++ +T A+ F V    V
Sbjct: 707 KAFVPKDENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDIHASTAAKVFGVDINDV 766

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           T++QR+  K +   + Y  G  AF  +++ T L+      L+ T
Sbjct: 767 TREQRSNAKTVNFGIVY--GVSAF-GLSNQTDLSRGEAKELIDT 807


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F      
Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 742 VTSEQRRRAKAVNFGLIY--GMSAF 764


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P  +R H    Q +T      + DP+ LQ I         +R   IA  G +++ 
Sbjct: 647 PQMVNPLTNRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPTGYRIMA 705

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ ++  L AF  G+D++  T A  F V    VT +QR   K +   
Sbjct: 706 ADYSQIELRIMAHLSQDKGLLAAFAQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFG 765

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 766 LIY--GMSAF 773


>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963]
          Length = 915

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 166/460 (36%), Gaps = 128/460 (27%)

Query: 192 INDRGYCVDVALAHTL-----NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           I   G  VD A  H L     +Q+ D   +  +   + +  G        ++L+  LF E
Sbjct: 526 IEATGIVVDSAHLHDLQSRFASQVADAANSAYEVIDKQINLG------SPKQLQVVLFEE 579

Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGR 303
             +     T+T       + + L  +    F   + A R A    + ++ L++A+  DGR
Sbjct: 580 LDMPKTKKTKTGYSTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVTVDGLLKAVAEDGR 639

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +  T     A+ TGR S      QN+P  + +  E                         
Sbjct: 640 IHTTFNQTVAA-TGRLSSTDPNLQNIPVRNDAGRE------------------------- 673

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  +G   L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   
Sbjct: 674 IRDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIE 733

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K M   L Y              GL+    A  +K ++            
Sbjct: 734 EVTPELRRRVKAMSYGLAY--------------GLSAYGLASQLKIST------------ 767

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIAR 541
                                E  K+      +R   + + LH   EQ  ++G  + +  
Sbjct: 768 ---------------------EEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLYG 806

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           +RR +P                                LN+  RQ  RE      L   I
Sbjct: 807 RRRYLP-------------------------------DLNSDNRQ-RREVAERAALNAPI 834

Query: 602 VQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635
            Q  + DI+   M+N  KA  D      ++L VHDE+V E
Sbjct: 835 -QGTAADIIKVAMINVQKALADAGLKSRMLLQVHDELVLE 873


>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301]
 gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301]
          Length = 928

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H   +Q +       +SDP+ LQ I         +R   IA +G  +V AD + IE 
Sbjct: 653 GRVHTSYNQAVAITGRLASSDPN-LQNIPVRSAEGRRIREAFIAPKGSHIVSADYSQIEL 711

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++ ++  L AF   ED++  T A  F V    V  +QR   KV+   L Y  G  
Sbjct: 712 RIMAHLSKDEGMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIY--GMS 769

Query: 447 AF 448
           AF
Sbjct: 770 AF 771


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
           polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   +A  G  LV  D + I
Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K +   + Y
Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673


>gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium pseudotuberculosis I19]
          Length = 886

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++A+ SDGR+  T     AS TGR S      QN+P  ++                
Sbjct: 598 LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTQDGRR------------ 644

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 645 -------------IRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLH 691

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F V   QVT + R   K M   L Y  G  AF
Sbjct: 692 NYVGSRVFEVPVDQVTPELRRRVKAMSYGLVY--GLSAF 728


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I     I   +R   IA  G+ L+ AD + IE R+
Sbjct: 647 RVHTSYHQALTATGRLSSSDPNLQNIPIRGEIGRQIRKAFIAPAGRVLLAADYSQIELRL 706

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   L AF  G+D++  T A    +A   VT DQR   K +   L Y
Sbjct: 707 MAHFSQDDALLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLY 759


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   +A  G  LV  D + I
Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K +   + Y
Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+    H   +Q +T      +S+P+ LQ I         +R   I  EG +   AD + 
Sbjct: 676 PKTGHIHTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRRAFIPDEGCEFFSADYSQ 734

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF+ G+D++  T A+ +      VT++QR+  K     + Y
Sbjct: 735 IELRIMAHLSGDPHMIEAFQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIY 792


>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 934

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   +A  G+KL+  D + 
Sbjct: 656 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQ 714

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AFE+G D++  T A  F      V+ D+R   K +   L Y  
Sbjct: 715 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMY-- 772

Query: 444 GAKAF 448
           G  AF
Sbjct: 773 GMSAF 777


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 119/320 (37%), Gaps = 77/320 (24%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV----- 213
           EY   D  +T ++     PL  KEQ               V+   A   N +V V     
Sbjct: 527 EYAAEDADITLQLKNVFLPLIKKEQ---------------VEKVFAEVENPLVKVLTNME 571

Query: 214 -ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
            E  ++D++     Y +V     +E  +  ++ + G+     +      VL    KL P+
Sbjct: 572 FEGIRIDEQFLK-DYSIVLQKDAME-FEQSVYEQAGVKFNLASPKQLGEVLFDKMKLDPK 629

Query: 273 AIQVFNNRMRASRSAVLKL--------------------NTLVEAM-----NSDGRLRGT 307
           A +    +       + KL                    NT V+A+     +  GR+  T
Sbjct: 630 AKKTKTGQYATGEDVLAKLANQHKICNDILSFRELTKLKNTYVDALPQLINSKTGRVH-T 688

Query: 308 LQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                 + TGR S      QN+P R  R  E                          +R 
Sbjct: 689 SYAQAVAVTGRLSSTNPNLQNIPVRTERGRE--------------------------IRK 722

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             I   E   LV AD + IE R++A ++ +    +AF+TG+D++  T A+ FNV  ++VT
Sbjct: 723 AFIPRDENHVLVSADYSQIELRIVAAISADVNMCEAFKTGKDIHTATAAKVFNVEESEVT 782

Query: 426 KDQRAIGKVMELALGYQGGA 445
           K+ R   K +   + Y  GA
Sbjct: 783 KEMRYKAKSVNFGIIYGQGA 802


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F      
Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 742 VTSEQRRRAKAVNFGLIY--GMSAF 764


>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
 gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G  ++ AD + IE R++A ++G+   + AF  G+D++  T A  F V   Q
Sbjct: 673 IREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLIHAFSEGQDIHRATAAEVFGVPVEQ 732

Query: 424 VTKDQRAIGKVMELALGY 441
           V  +QR   KV+   L Y
Sbjct: 733 VNPEQRRYAKVINFGLIY 750


>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 933

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 28/215 (13%)

Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300
            +R+L++ +K T  A + FN     +++A     LKL  +V              EA+  
Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIAD 624

Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
              L R  L++ G ++         P    P+  R H    Q         +SDP+ LQ 
Sbjct: 625 QHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683

Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +A  G+KL+  D + IE R++A ++G+   + AFE+G D++  T 
Sbjct: 684 IPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATA 743

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A  F      V+ D+R   K +   L Y  G  AF
Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   +A  G  LV  D + I
Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K +   + Y
Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   +A  G  LV  D + I
Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K +   + Y
Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   +A  G  LV  D + I
Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K +   + Y
Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673


>gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469]
 gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469]
          Length = 912

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H  L+Q +T      +SDP+   I     +   VR+     EG   +  D + IE R+
Sbjct: 638 RIHTTLNQTVTATGRLSSSDPNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRL 697

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ ++  + AF +G D +  T AR F V   +VT   R+  K +   + Y  G +AF
Sbjct: 698 LAHLSADEHLVAAFNSGADFHAATAARVFGVPVEEVTPALRSRAKAVNFGIVY--GQQAF 755


>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 934

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   +A  G+KL+  D + 
Sbjct: 656 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQ 714

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AFE+G D++  T A  F      V+ D+R   K +   L Y  
Sbjct: 715 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMY-- 772

Query: 444 GAKAF 448
           G  AF
Sbjct: 773 GMSAF 777


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G +++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F      
Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 742 VTSEQRRRAKAVNFGLIY--GMSAF 764


>gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
 gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
          Length = 882

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T      + TGR S      QN+P  + +  +            
Sbjct: 596 LEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEAGRQ------------ 642

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  I  EG ++L+ AD + IE RV+A ++ +   ++A++ GEDL+
Sbjct: 643 -------------IRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDLH 689

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F+V   QVT + R   K M   L Y  G  AF
Sbjct: 690 NFVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 726


>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
 gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
          Length = 904

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 30/166 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++A+  DGR+  T +    + TGR S      QN+P   R+ E                
Sbjct: 619 LIKAIGPDGRIHTTFR-QDVAATGRLSSTDPNLQNIP--VRTDE---------------- 659

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                  +  +R   +  EG + L+ AD + IE R++A ++G+   ++AF TGEDL+   
Sbjct: 660 -------ARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDDGLIEAFRTGEDLHNFV 712

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +R+F V   +V  + R   K M   L Y  G  AF  +AS  G++
Sbjct: 713 ASRAFGVPIDEVGAELRRRVKAMSYGLAY--GLSAF-GLASQLGVS 755


>gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
          Length = 898

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382
           P   + H   +Q +T      +++P+ LQ I        +  ++ + +SE    V AD +
Sbjct: 619 PVTGKIHSSFNQTVTATGRISSTEPN-LQNIPVRHEMGREIRKAFIPSSENAVFVDADYS 677

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE RVLA + G++  + AF  GED++  T +  F+VAP  VT + R   K +   + Y
Sbjct: 678 QIELRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELRRKAKAVNFGIVY 736


>gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10]
 gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10]
          Length = 896

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 45/332 (13%)

Query: 140 ECLYDRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPL--SSKEQELWY-----LDQT 191
           E LYD++     +   +   E C   V     + ++L P+   + + EL+Y     L + 
Sbjct: 446 EILYDKHGKRLEQGQDVSSSEVCAAAVNAIYGLTQKLRPIIRDNGQDELYYKIELPLVEV 505

Query: 192 IND---RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
           + +   RG+ VDV      ++ +D     L+ E+  +  G   +    ++L   LF + G
Sbjct: 506 LANMELRGFKVDVENLKAYSKELDSRLVILENEI-YMQAGETFNINSPKQLGVILFEKLG 564

Query: 249 LHLEDLTET---TCQRVLS--SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           L +   T+T   T   VL   S K    + I  +   M+   +     + L+  +  DG+
Sbjct: 565 LPVGKKTKTGYSTSAEVLEQLSYKHEIVERILEYRQLMKLKSTYA---DGLLSVLEQDGK 621

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +         + TGR S      QN+P       ++ ++   +PT+           SD 
Sbjct: 622 IHSNFN-QTVTATGRISSTEPNLQNIPVKLEMGRKIRKVF--IPTN-----------SDY 667

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           V           L+ AD + IE RVLA + G+   ++AF   ED++ TT ++ F + P +
Sbjct: 668 V-----------LLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVFGIPPEE 716

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           V+   R+  K +   + Y  G  +  K    T
Sbjct: 717 VSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVT 748


>gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
 gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
          Length = 885

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383
           P+  + +   +Q +T      +SDP+   I     +   +R   + S G +++V AD + 
Sbjct: 606 PKTHKIYSTFNQTVTATGRLSSSDPNLQNIPVKTEMGREIRKVFVPSAGDRVLVDADYSQ 665

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA ++G++  +  F   +D++  T +  FNV    V+++QR+  K +   L Y  
Sbjct: 666 IELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFNVPMDAVSREQRSHAKAINFGLIY-- 723

Query: 444 GAKAF 448
           G +AF
Sbjct: 724 GKQAF 728


>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
 gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
          Length = 901

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   IA+   ++V  D + IE R++A ++ +   L AF   ED++ +T +  FN   A 
Sbjct: 662 VREAFIANTDSQIVSCDYSQIELRIMAHLSKDPGLLDAFNQNEDIHRSTASAIFNTNDAS 721

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           V+ +QR   KV+   L Y  G  AF  ++ T  ++ N+  + +
Sbjct: 722 VSSEQRRFAKVINFGLIY--GMSAF-GLSQTLNIDRNSAKNFI 761


>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
 gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
          Length = 926

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   +A  G+KL+  D + 
Sbjct: 648 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQ 706

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AFE+G D++  T A  F      V+ D+R   K +   L Y  
Sbjct: 707 IELRIMAHLSGDPGLVSAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 764

Query: 444 GAKAF 448
           G  AF
Sbjct: 765 GMSAF 769


>gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896]
          Length = 872

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q +T      + +P+   I     +   +R   +A EG  LV AD + I
Sbjct: 594 PTSKRIHSTFNQTLTTTGRISSLEPNLQNIPVRTEMGRELRKVFVAKEGYVLVDADYSQI 653

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA MA E+  ++ F    D++  T +  F+V   +VTK+ R+  K +   + Y
Sbjct: 654 ELRVLAHMAQEKKMIEGFHGSMDIHTKTASEVFSVPVEEVTKELRSAAKAVNFGIVY 710


>gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
          Length = 885

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 27/158 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++A+  DGR+  T Q    S TGR S      QN+P  + + +++    T      
Sbjct: 597 LEGLIKAVGDDGRIHTTFQQTMTS-TGRLSSTDPNLQNIPIRTPAGKKIRSAFT------ 649

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                             + +  + L+ AD + IE RV+A ++ +   + A+  GEDL+ 
Sbjct: 650 ------------------VGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNGEDLHN 691

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
              A+ F+V P+ VT + R   KV  L+ G   G  AF
Sbjct: 692 YVGAKVFDVPPSGVTPELRR--KVKALSYGLVYGLSAF 727


>gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 882

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T      S TGR S      QN+P  + +  +            
Sbjct: 596 LEGLIKTVQPDGRIHTTFNQTVTS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 642

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  I  EG ++L+ AD + IE RV+A ++ +   ++A++ GEDL+
Sbjct: 643 -------------IRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDLH 689

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F+V   QVT + R   K M   L Y  G  AF
Sbjct: 690 NFVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 726


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380
           P+ +    R H   +Q+ T      +S+P+   I         +R+C   S+GK LV AD
Sbjct: 562 PRKVDVGGRLHTTFNQLATATGRLSSSNPNLQNIPIKGEFGPRMRACFKPSKGKLLVAAD 621

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA M+ +   L+AF   ED++  T    F+    +V++D+R   K +   L 
Sbjct: 622 YSQIELRILAHMSMDPNLLQAFGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTINFGLL 681

Query: 441 YQGGAKAFQKMASTT 455
           Y  G +   +  S +
Sbjct: 682 YGMGPQKLSRELSIS 696


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + IE 
Sbjct: 657 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIEL 715

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G++  L+AF+ G+D++  T A    V    VT +QR   K +   L Y  G  
Sbjct: 716 RIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIY--GMS 773

Query: 447 AFQKMASTTGLNLNTFAHLVKT 468
           AF  +A   G+      H + T
Sbjct: 774 AF-GLAKQLGIPRGEAQHYMDT 794


>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
 gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
          Length = 933

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   +A  G+KL+  D + 
Sbjct: 655 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AFE+G D++  T A  F      V+ D+R   K +   L Y  
Sbjct: 714 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
 gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
          Length = 907

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 116/287 (40%), Gaps = 68/287 (23%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLKL 291
           ++L   LF E GL +   T+T   T Q VL   +KL  QA  I +  N  + ++     +
Sbjct: 564 KQLGVILFEEMGLPVIKKTKTGYSTAQDVL---EKLAGQAPIIDLILNYRQLNKLQSTYV 620

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L E ++ DG++    Q    S TGR S      QN+P   RS E              
Sbjct: 621 EGLQEFIHEDGKIHSRFQQTLTS-TGRLSSADPNLQNIP--IRSEE-------------- 663

Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       +R   + S E   +  +D + IE RVLA ++G++   +AF   ED++ 
Sbjct: 664 ---------GRSIRKAFVPSHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHT 714

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL--NLNTFAHLVKT 468
           +T  + +NV   +VT + R   K +   + Y           S  GL  NLN        
Sbjct: 715 STAMKVYNVPKEEVTSNMRRNAKAVNFGIVYG---------ISDYGLSQNLNI------- 758

Query: 469 NSAPEEWEDAENFCRWMQENHP----------EHAIEDLFIGTACER 505
            S PE    A+NF     EN+P          E A ED ++ T   R
Sbjct: 759 -SRPE----AKNFIDTYLENYPGVQAYMKDVVEKAKEDGYVETLFNR 800


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   +A  G+KL+  D + 
Sbjct: 656 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQ 714

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AFE+G D++  T A  F      V+ D+R   K +   L Y  
Sbjct: 715 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMY-- 772

Query: 444 GAKAF 448
           G  AF
Sbjct: 773 GMSAF 777


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      ++DP+ LQ I         +R   +A  G K++  D + IE 
Sbjct: 657 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIEL 715

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G++  L+AF+ G+D++  T A    V    VT +QR   K +   L Y  G  
Sbjct: 716 RIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIY--GMS 773

Query: 447 AFQKMASTTGLNLNTFAHLVKT 468
           AF  +A   G+      H + T
Sbjct: 774 AF-GLAKQLGIPRGEAQHYMDT 794


>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
 gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
          Length = 901

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 25/148 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++++  DGR+  T Q   A+ TGR S      QN+P  + +   +              
Sbjct: 616 LLKSVADDGRIHTTFQQTIAA-TGRLSSTEPNLQNIPIRTEAGRRIR------------- 661

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                      R+ V+    + L+ AD + IE R++A ++G++  ++AF TGEDL+    
Sbjct: 662 -----------RAFVVGDGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVG 710

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +R F V  + VT   R+  K M   L Y
Sbjct: 711 SRVFQVETSAVTPAMRSKIKAMSYGLAY 738


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H   +Q  T      +SDP+ LQ I         +R   IA +G  LV AD + I
Sbjct: 662 RTGRIHTSFNQAGTTTGRLSSSDPN-LQNIPARTHEGKLIRKAFIAPQGYTLVSADYSQI 720

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A +A +   +KAF+ G D++  T A        +VT ++R+  K     L Y  G
Sbjct: 721 ELRLIAHIAKDPNLIKAFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLMYGMG 780

Query: 445 AKAFQKMASTTGLNL 459
           A     +++ TGL+ 
Sbjct: 781 AHG---LSAQTGLSF 792


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 9/122 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H    Q +T      +S+P+ LQ I         +R   +A  G KL+ AD + IE 
Sbjct: 666 GRVHSAFHQAVTATGRLSSSNPN-LQNIPIRSEEGRRIRQAFVADPGCKLISADYSQIEL 724

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++ ++    AF  GED++  T A  F V   +V+ +QR   K +   L Y  G  
Sbjct: 725 RIMAHLSEDERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINFGLIY--GMS 782

Query: 447 AF 448
           AF
Sbjct: 783 AF 784


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
           IT +P       D L      VR C +A EG+ +   D    E RVLA ++G++  ++AF
Sbjct: 360 ITGIPAQTLPSGDWL------VRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAF 413

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           + G DL++ T   ++     ++TKD  +R   K +     Y GGAK    +A  TGL++ 
Sbjct: 414 KDGADLHLMTARAAW--PDREITKDSPERKYAKTVNFGRVYGGGAKT---VAEQTGLDME 468

Query: 461 TFAHLV 466
               +V
Sbjct: 469 AAKQVV 474


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 8/150 (5%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVV 378
            P    P+  R H       T      +S+P+    P++ I    +R+  IASEG  L+ 
Sbjct: 680 LPSYISPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLS 739

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA +A      +AF  G+D++  T ++ F VA  +++ D R   K +   
Sbjct: 740 ADYSQIELRLLAHIADITALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFG 799

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + Y  G  AF  +A+  G++    +H ++ 
Sbjct: 800 IIY--GISAF-GLANQLGISREEASHYIRV 826


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 177/454 (38%), Gaps = 73/454 (16%)

Query: 30  VILFAFGFDDHPVELWDCVHD--PVMPQV----LKEALEN-TDVTIVAHNSYFERTVLKA 82
           ++ F+F F++         H    V PQV     K+A+E      IV  N  F+ ++L +
Sbjct: 352 MVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEAAKKAIEKLMRHRIVGQNLKFDLSLLYS 411

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              ++ PI     T++LA      S +     A K    +M+  KE +    KGE    +
Sbjct: 412 HLEME-PIEPEADTMILAWLLDPGSRVGLDILAQKFLGYQMKSFKETVK---KGEDFSSV 467

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-----------SSKEQELWYLDQT 191
                     A      Y   D   TR+++ RL  L            +KE E  +++  
Sbjct: 468 ----------ALEEAAFYAAEDAWATRQLYFRLTELFKKGGLEHLLKEAKEVEFPFINVL 517

Query: 192 I--NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
           I     G  VD     +L + +  E  +L QE+ +L  G   + +  ++L   LF   GL
Sbjct: 518 IAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLA-GTEFNIKSTQQLGNVLFGTLGL 576

Query: 250 HLEDLTET---TCQRVLSSNKKLTP--QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
                T+T   T + VL +     P  + I  +    +   + V  L  L E  + +GR+
Sbjct: 577 KGGKKTKTGYSTNESVLRNLIGEHPIVEKILEYREHQKMLSTYVDPLLKLAEK-DPEGRI 635

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T    G + TGR +      QN+P  S                          +   V
Sbjct: 636 HTTFVQTGTA-TGRLASKDPNLQNIPVRSE-------------------------LGRRV 669

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A EG +L   D + IE R+LA  +G+    +AFE GED+++ T  + F    A  
Sbjct: 670 RRAFVAQEGFRLASIDYSQIELRLLAHFSGDAALREAFEKGEDIHMATAIKLFGPEEAAA 729

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
              +R   K +   L Y  G++   K+A   G+ 
Sbjct: 730 ---KRNFAKSINFGLLYGMGSR---KLADELGIT 757


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G K++ AD + IE R++A ++G++  ++AF+ G D++  T +  F V   +
Sbjct: 661 IREAFVAEPGHKILAADYSQIELRIMAHLSGDETLIRAFKEGRDIHQATASEVFGVPLDE 720

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V  +QR   K +   L Y  G  AF  +A   G++
Sbjct: 721 VESEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIS 752


>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
 gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
          Length = 931

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      +SDP+ LQ I         +R   I   G K V  D + I
Sbjct: 653 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRAGEGRRIRQAFIPETGYKYVAVDYSQI 711

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  L AF  G+D++  T A  F+V    VT DQR   K +   L Y  G
Sbjct: 712 ELRIMAHLSQDKGLLTAFSEGKDIHRATAAEVFSVELDDVTSDQRRSAKAINFGLIY--G 769

Query: 445 AKAF 448
             AF
Sbjct: 770 MSAF 773


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389
           H   +Q +T      +S+P+ LQ I         +R   I  +G +   AD + IE R++
Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A ++G+   ++AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y
Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389
           H   +Q +T      +S+P+ LQ I         +R   I  +G +   AD + IE R++
Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A ++G+   ++AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y
Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809


>gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 650

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 36/246 (14%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A TL Q+ +    KL +ELE   YG       L   ++L   LF + GL +   T+T   
Sbjct: 271 ASTLIQLQNEFAVKL-KELEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 329

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  T
Sbjct: 330 TAVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 386

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +R+ EE  QI       + S+PD        + SC         
Sbjct: 387 GRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VPSEPDG------YIFSC--------- 425

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435
              D + +E RVLA ++G+Q   +AF+TG D++  T  + F++ +P +VT   R   K +
Sbjct: 426 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAV 482

Query: 436 ELALGY 441
              + Y
Sbjct: 483 NFGIVY 488


>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 933

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   +A  G+KL+  D + 
Sbjct: 655 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AFE+G D++  T A  F      V+ D+R   K +   L Y  
Sbjct: 714 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
 gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
          Length = 953

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+    P++   S  +R   +  EG  L  AD + IE R
Sbjct: 664 GRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADYSQIELR 723

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++ E   L+A+  G+D++  T +  F+    ++T ++R IGK++   + Y  GA+ 
Sbjct: 724 ILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR--EEITSEERRIGKIINFGVIYGMGAQR 781

Query: 448 FQKMASTT 455
           F +   ++
Sbjct: 782 FARETGSS 789


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389
           H   +Q +T      +S+P+ LQ I         +R   I  +G +   AD + IE R++
Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A ++G+   ++AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y
Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389
           H   +Q +T      +S+P+ LQ I         +R   I  +G +   AD + IE R++
Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A ++G+   ++AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y
Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809


>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
 gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
          Length = 933

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 28/215 (13%)

Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300
            +R+L++ +K T  A + FN     +++A     LKL  +V              EA+  
Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIAD 624

Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
              L R  L++ G ++         P    P+  R H    Q         +SDP+ LQ 
Sbjct: 625 QHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683

Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +A  G+KL+  D + IE R++A ++G+   + AFE+G D++  T 
Sbjct: 684 IPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATA 743

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A  F      V+ D+R   K +   L Y  G  AF
Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776


>gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
 gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
          Length = 964

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+    P++   S  +R   +  EG  L  AD + IE R
Sbjct: 675 GRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADYSQIELR 734

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++ E   L+A+  G+D++  T +  F+    ++T ++R IGK++   + Y  GA+ 
Sbjct: 735 ILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR--EEITSEERRIGKIINFGVIYGMGAQR 792

Query: 448 FQKMASTT 455
           F +   ++
Sbjct: 793 FARETGSS 800


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 132/327 (40%), Gaps = 71/327 (21%)

Query: 160 YCKGDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
           YC  DV +TR+++            K +E L   EQ L  +   +  RG  +D+     L
Sbjct: 536 YCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKEL 595

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDL--------TE 256
           +    +E  K  + +E   Y +  +   L   ++L   LF + GL  +          T+
Sbjct: 596 S----IELNKALKNIEKSAYKIAKTDFNLSSPKQLGEVLFEQLGLDKKKSRRTKTGWSTD 651

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                 L  +  + P  I+         R+    L+T VEA+            L  ++T
Sbjct: 652 ANVLERLQGDNPIVPLVIE--------HRTLSKLLSTYVEALPQ----------LVEAQT 693

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS 371
           GR                 H + +Q +T      +S+P+   I      S  +R   +  
Sbjct: 694 GRV----------------HTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPR 737

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EG +L+ AD + IE R+LA ++GE    +A+  G+D++  T     +     +T ++R +
Sbjct: 738 EGWQLLSADYSQIELRILAHLSGEASLQEAYRNGDDVHALTAKILLD--KESITSNERRL 795

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLN 458
           GK +   + Y  G    Q+ A +TG++
Sbjct: 796 GKTINFGVIYGMGV---QRFARSTGVS 819


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   I  +G K+V AD + IE R++A ++ ++  L AF  G+D++  T +  F +   +
Sbjct: 709 IRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLDE 768

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 769 VTAEQRRSAKAINFGLIY--GMSAF 791


>gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7]
 gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7]
          Length = 856

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 26/160 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L++ + SDGR+    +    +RTGR S      QN+P                    
Sbjct: 569 VDGLLKEVESDGRVHSVFK-QTETRTGRISSTEPNMQNIPVRKE---------------- 611

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                    I   +R   +A EG  L+ AD + IE RVLA + G++   K FE G D++ 
Sbjct: 612 ---------IGRNMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHA 662

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            T ++ F +    V  + R+  K +   + Y  GA +  K
Sbjct: 663 MTASQVFGIPADMVLPEMRSAAKAVNFGIIYGIGAFSLSK 702


>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
 gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
          Length = 914

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 32/176 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           F   + A R A    + ++ L++ +  DGR+  T     A+ TGR S      QN+P  +
Sbjct: 609 FLEHLLAHRDATRLKVTVDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT 667

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392
            +  +                         +R   +  EG   L+ AD + IE R++A +
Sbjct: 668 DAGRQ-------------------------IRDGFVVGEGYDSLLTADYSQIEMRIMAHV 702

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +G+   ++AF TGEDL+    AR+F V   +VT + R   K M   L Y  G  AF
Sbjct: 703 SGDAGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAY--GLSAF 756


>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
 gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
          Length = 928

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  LKAF  G+D++  T A  F +    V+ +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLKAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1]
 gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1]
          Length = 949

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++A N  DGR+  T +   A+ TGR S      QN+P  + +  E           
Sbjct: 660 VQTLIDATNPRDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE----------- 707

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G D 
Sbjct: 708 --------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDF 753

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  + +   ++T DQR+  K M   L Y
Sbjct: 754 HKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 786


>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 928

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT++QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
          Length = 927

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   +A  G+KL+  D + 
Sbjct: 649 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AFE+G D++  T A  F      V+ D+R   K +   L Y  
Sbjct: 708 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389
           H   +Q +T      +S+P+ LQ I         +R   I  +G +   AD + IE R++
Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A ++G+   ++AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y
Sbjct: 758 AHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809


>gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 437

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 231 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 289

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 290 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 347

Query: 444 GAKAF 448
           G  AF
Sbjct: 348 GMSAF 352


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAG 383
           +  R H   +Q++  +   ++SD   LQ I         +R   I  +    L+ AD + 
Sbjct: 664 KTKRIHTSFNQVVA-VTGRLSSDNPNLQNIPIRTERGRQIRKAFIPRDSDHVLLSADYSQ 722

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G++   +AF+ G+D++  T A+ F VA A VTK+ R   K +   + Y  
Sbjct: 723 IELRIVASISGDKNMCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVNFGIIYGQ 782

Query: 444 GA 445
           GA
Sbjct: 783 GA 784


>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
 gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
          Length = 923

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      +SDP+ LQ I       
Sbjct: 622 LEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEG 680

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G++  L AF  G+D++  T A   ++  
Sbjct: 681 RRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDI 740

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             V+ +QR   K +   L Y  G  AF
Sbjct: 741 ENVSSEQRRRAKAINFGLIY--GMSAF 765


>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
 gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
          Length = 927

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q         +SDP+ LQ I         +R   +A  G+KL+  D + 
Sbjct: 649 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AFE+G D++  T A  F      V+ D+R   K +   L Y  
Sbjct: 708 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v]
          Length = 605

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443

Query: 444 GAKAF 448
           G  AF
Sbjct: 444 GMSAF 448


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389
           H   +Q +T      +S+P+ LQ I         +R   I  +G +   AD + IE R++
Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A ++G+   ++AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y
Sbjct: 758 AHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809


>gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4]
 gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4]
          Length = 915

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 30/169 (17%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           F   + A R A    + ++ L++A+  DGR+  T     A+ TGR S      QN+P  +
Sbjct: 610 FLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRN 668

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392
            +  E                         +R   +  +G   L+ AD + IE R++A +
Sbjct: 669 DAGRE-------------------------IRDGFVVGQGFDVLLTADYSQIEMRIMAHV 703

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +G++  ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 704 SGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY 752


>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1]
          Length = 922

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG+K++ AD + IE R++A ++ +   L AF  G+D++  T A  F      
Sbjct: 682 IRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAFAEGKDIHRATAAEVFGTDFDS 741

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 742 VTSEQRRRAKAVNFGLIY--GMSAF 764


>gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
           Polymerase I Complexed With DTMP
 gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
           Polymerase I Complexed With Deoxynucleoside Triphosphate
           And Pyrophosphate
          Length = 605

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443

Query: 444 GAKAF 448
           G  AF
Sbjct: 444 GMSAF 448


>gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 913

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 31/158 (19%)

Query: 289 LKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +KL   VE    A+ SDGR+  T Q   A+ TGR S      QN+P  +R+ E +     
Sbjct: 619 IKLRQTVEGLRKAIQSDGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARNEEGM----- 670

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R      EG + L+ AD + IE R++A ++G+Q  ++AF 
Sbjct: 671 ------------------RIRQAFTVGEGYECLMTADYSQIEMRIMAHLSGDQALIEAFR 712

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +GEDL+    A    +    VT  QR+  K M   L Y
Sbjct: 713 SGEDLHRYVAALVHGIDVDDVTAQQRSHVKAMSYGLAY 750


>gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
           Manganese
 gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
           Only
 gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
           Manganese
 gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
 gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
           And Europium (Iii) Ion
 gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Short Dna Fragment Carrying 2'-0-
           Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
 gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna Tetramer Carrying
           2'-O-(3-Aminopropyl)- Rna Modification
           5'-D(Tt)-Ap(U)-D(T)-3'
 gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431]
 gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G]
 gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180]
 gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357]
 gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74]
          Length = 605

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443

Query: 444 GAKAF 448
           G  AF
Sbjct: 444 GMSAF 448


>gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227]
          Length = 605

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443

Query: 444 GAKAF 448
           G  AF
Sbjct: 444 GMSAF 448


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 21/138 (15%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII---SDC---VRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +       +SDP+ LQ I   SD    +R   +A  G  L+ AD + I
Sbjct: 615 RTGRVHTHYHQAVAATGRLSSSDPN-LQNIPVRSDLGRRIRQAFVAEPGHLLISADYSQI 673

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY--- 441
           E R++A ++G+    +AF  G D++  T A  F +   QVT +QR   K +   L Y   
Sbjct: 674 ELRIMAHLSGDAGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQT 733

Query: 442 -----------QGGAKAF 448
                      QG AKA+
Sbjct: 734 PYGLAQQLGVGQGEAKAY 751


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389
           H   +Q +T      +S+P+ LQ I         +R   I  +G +   AD + IE R++
Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A ++G+   ++AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y
Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809


>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
          Length = 605

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443

Query: 444 GAKAF 448
           G  AF
Sbjct: 444 GMSAF 448


>gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM
           22836]
          Length = 933

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           P+  + H   +Q +T      +++P+   I I D     +R   IA EG     AD + I
Sbjct: 655 PKDGKIHTSFNQTVTATGRLSSTNPNLQNIPIRDAQGREIRKSFIADEGCLFFSADYSQI 714

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ +   ++AF +GED++  T A+ + +   +VT D R   K     + Y
Sbjct: 715 ELRIMAHLSQDPSMVEAFNSGEDIHAATAAKIYKLKIDEVTSDMRRKAKTANFGIIY 771


>gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74]
          Length = 605

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443

Query: 444 GAKAF 448
           G  AF
Sbjct: 444 GMSAF 448


>gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 912

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 31/158 (19%)

Query: 289 LKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +KL   VE    A+ +DGR+  T Q   A+ TGR S      QN+P     HEE  +I  
Sbjct: 618 IKLRQTVEGLRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIPA---RHEEGMRI-- 671

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403
                               R      EG   L+ AD + IE R++A ++G+Q  ++AF 
Sbjct: 672 --------------------REAFTVGEGYDCLMTADYSQIEMRIMAHLSGDQALIEAFR 711

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +GEDL+    A    +    VT  QR+  K M   L Y
Sbjct: 712 SGEDLHRYVAALVHGIEVGDVTAQQRSHVKAMSYGLAY 749


>gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 297

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISD------CVRSCVIASEG-KKLVVADLA 382
           PR  R H    Q +       + DP+ LQ I +       +RS  +  EG   L+ AD +
Sbjct: 17  PRDGRIHTTFTQTVAATGRLSSVDPN-LQNIPNRNATGRDIRSAFVPGEGFADLLSADYS 75

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +E R++A ++G++  +KAF++G D +    +  + +   +VT DQR   K M   L Y
Sbjct: 76  QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAY 134


>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
 gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
          Length = 932

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EGK LV  D + IE R+LA +AG +   +AF  GED++  T +  F+V   +
Sbjct: 692 IREAFVAPEGKVLVSLDYSQIELRILAHVAGIESMKQAFRDGEDIHAATASEMFDVPLDE 751

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 752 MTPDVRRQAKAINFGVIY 769


>gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
 gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
          Length = 950

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++A N  DGR+  T +   A+ TGR S      QN+P  + +  E           
Sbjct: 661 VQTLIDATNPRDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE----------- 708

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G D 
Sbjct: 709 --------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDF 754

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  + +   ++T DQR+  K M   L Y
Sbjct: 755 HKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 787


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G +++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F     +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T]
 gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6]
          Length = 605

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443

Query: 444 GAKAF 448
           G  AF
Sbjct: 444 GMSAF 448


>gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
 gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
          Length = 887

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 135/370 (36%), Gaps = 117/370 (31%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           F   + A R A    + ++ L++A+  DGR+  T     A+ TGR S      QN+P  +
Sbjct: 582 FLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRN 640

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392
            +  E                         +R   +  +G   L+ AD + IE R++A +
Sbjct: 641 DAGRE-------------------------IRDGFVVGQGFDVLLTADYSQIEMRIMAHV 675

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  ++AF TGEDL+    +R+F V   +VT + R   K M   L Y           
Sbjct: 676 SGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY----------- 724

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              GL+    A  +K ++                                 E  K+    
Sbjct: 725 ---GLSAYGLASQLKIST---------------------------------EEAKQQMDA 748

Query: 513 KHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +R   + + LH   EQ  ++G  + +  +RR +P                        
Sbjct: 749 YFARFGGVRDYLHAVVEQARKDGYTSTLYGRRRYLP------------------------ 784

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IV 625
                   LN+  RQ  RE      L   I Q  + DI+   M+N  KA  D      ++
Sbjct: 785 -------DLNSDNRQ-RREVAERAALNAPI-QGTAADIIKVAMINVQKALADAGLKSRML 835

Query: 626 LTVHDEIVCE 635
           L VHDE+V E
Sbjct: 836 LQVHDELVLE 845


>gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 919

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 736 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIE 794

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  + AF +GEDL+ T     FNV P  V  + R   K M   L Y  G 
Sbjct: 795 LRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAY--GL 852

Query: 446 KAF 448
            AF
Sbjct: 853 SAF 855


>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna
          Length = 605

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443

Query: 444 GAKAF 448
           G  AF
Sbjct: 444 GMSAF 448


>gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 838

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 319 WSGCVFPPQNL--PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIA 370
            +G + P ++   P   R H +  Q +      ++S+P+ LQ I      ++ +R   I 
Sbjct: 550 LTGYLIPLRDYINPETKRIHTKWSQTVAGTGRIVSSEPN-LQNIPVKGEWAEFLREVFIP 608

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             G   + AD + IE R+LA M+ +   +KAF  G+D++  T +  F++    VT + R 
Sbjct: 609 ENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHTATASEIFSIPENAVTDEHRR 668

Query: 431 IGKVMELALGY 441
           I K +   + Y
Sbjct: 669 IAKTVNFGISY 679


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           LQ+ G ++         P    P+  R H    Q +T      ++DP+ LQ I       
Sbjct: 627 LQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEG 685

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +  
Sbjct: 686 RRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPL 745

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             V+ +QR   K +   L Y  G  AF
Sbjct: 746 ESVSNEQRRSAKAINFGLIY--GMSAF 770


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q +T      +SDP+ LQ I         +R   + +EG  L+ AD + 
Sbjct: 613 PDTGRIHTSFNQAVTATGRLSSSDPN-LQNIPIRTEEGRRIREAFVPAEGNLLLAADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E R+LA MA E    ++F  GED++  T +  F V    VT + R   K +   + Y  
Sbjct: 672 VELRILAHMADEPALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTINFGVLY-- 729

Query: 444 GAKAFQKMASTTGL 457
           G  AF  +A + G+
Sbjct: 730 GMSAF-GLAKSLGI 742


>gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
 gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
          Length = 902

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 105/238 (44%), Gaps = 39/238 (16%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLK--LNT 293
           ++L+  LF E GL      +T       + + L  Q  + V  + +R    A LK  ++ 
Sbjct: 557 KQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEHLLRHRDVAKLKTTVDG 616

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+++++ DGR+  T +   A+ TGR S      QN+P   R+ E                
Sbjct: 617 LLKSVSEDGRIHTTFKQTVAA-TGRLSSTDPNLQNIP--IRTEE---------------- 657

Query: 354 PDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  +G + L+ AD + IE R++A ++ +   ++AF +G D +  T
Sbjct: 658 -------GRRIRRAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGHDFHAAT 710

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---QKMASTT----GLNLNTFA 463
            +  F V  A+VT DQR   K M   L Y  G  AF   Q++  T     GL  N FA
Sbjct: 711 ASSVFGVPVAEVTADQRRKIKAMNYGLAY--GLSAFGLSQQLGITAEEARGLMDNYFA 766


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 365  RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
            R C +A +G K V+AD + IE R+ A +A +   ++A++   DL+  T +   N +  +V
Sbjct: 1553 RECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQNVDLHSLTASILKNKSINEV 1612

Query: 425  TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
             K++R + K +   L + G +    +M + TG NL
Sbjct: 1613 NKEERQLAKAVNFGLIF-GMSINGLRMYAETGYNL 1646


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G +++ AD + IE R++A ++ +   +KAF   +D++  T A  FNV+   
Sbjct: 681 IRQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIKAFTADKDIHRATAAEVFNVSVET 740

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
            T +QR   K +   L Y  G  AF
Sbjct: 741 ATDEQRRSAKAINFGLIY--GMSAF 763


>gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
 gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 937

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 25/219 (11%)

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           T G+  +    ++L+  LF    +     T+T     + S + L  Q    F   + A R
Sbjct: 578 TGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHR 637

Query: 286 SAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            A     T   L+E +  D R+  T     A+ TGR S      QN+P  + +   + ++
Sbjct: 638 DATKLRQTVEGLLETVAPDDRIHTTYSQTAAA-TGRLSSLHPNLQNIPVRTEAGRRIREV 696

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                            ++D V     A E   L+ AD + IE R++A ++ ++  ++AF
Sbjct: 697 F----------------VADEV-----AGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAF 735

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             GEDL+    ++ F V P +VT +QRA  K M   L Y
Sbjct: 736 REGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAY 774


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           P  L    R H   +Q+ T      + +P+ LQ +    R  ++A +G  L+  D + IE
Sbjct: 426 PHQLKADGRIHGSFNQVATVTGRFASREPN-LQNLPPRARRLIVAPKGWLLLGIDFSQIE 484

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
            R+LA M+G+    + +  GEDLY T  AR F V P     D     K+M++ L
Sbjct: 485 PRILAHMSGDPHFREPYLKGEDLYSTLAARVFKV-PLSECGDGSKYRKMMKIGL 537


>gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 895

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +  V+    + L+ AD + IE R++A ++ ++  ++AF +G D +  T AR F V P  V
Sbjct: 656 KGFVVGGGFESLMTADYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAV 715

Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448
           + +QRA  K M   L Y  G  AF
Sbjct: 716 SVEQRAKIKAMNYGLAY--GLSAF 737


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 58/311 (18%)

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLN 208
           Y   DV VT E+ K L+    +  +L  L Q +              G  +D  L +   
Sbjct: 485 YACEDVIVTHELNKVLDEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGLLNA-- 542

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTETTCQRVLSS 265
           Q +DV   K   E++S  + L   +  LE   +++  LF E GL LE   + T +   S+
Sbjct: 543 QQLDV--VKQMNEIQSQAFELAGDAFNLESPKQIQQILFSEEGLGLE-AKKKTPKGAPST 599

Query: 266 NKKLTPQAIQVFNN---RMRASRSAVLKLN-TLVEAMNSDGRLRG----TLQFLGASRTG 317
           N+    +A+++ ++    +  S   + KLN T +EA+     L      T      + TG
Sbjct: 600 NE----EALKLLDHPLVDLILSYRTLTKLNSTYLEALPKQIDLNTKRLHTSYHQAVTATG 655

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P           I T L   I              R   IA +G  ++
Sbjct: 656 RLSSSNPNLQNIP-----------IRTELGARI--------------RGAFIAGKGNVII 690

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  ++AF    D++  T +  FNV   +V KD R   K +  
Sbjct: 691 AADYSQIELRIMAHISQDKSLIEAFNNDVDVHSATASMMFNVPIEEVNKDHRRNAKAINF 750

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 751 GLIY--GMSAF 759


>gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
 gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
          Length = 864

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T     AS TGR S      QN+P  + S               
Sbjct: 578 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTESGR------------- 623

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  I  EG + L+ AD + IE RV+A ++ +   ++A++ GEDL+
Sbjct: 624 ------------TIRSAFIVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYKEGEDLH 671

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F+V   +VT + R   K M   L Y  G  AF
Sbjct: 672 NYVGSRVFDVPVDKVTSELRRRVKAMSYGLVY--GLSAF 708


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 11/152 (7%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIA-SEGKKL 376
            P Q  P   R H +  Q +       +++P+ LQ I         +R   I  S   +L
Sbjct: 657 LPQQVAPSTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTERGRQIRKAFIPRSPEYQL 715

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++ E   +++F+ GED++  T A+ F V   +VT++QR+  K + 
Sbjct: 716 LAADYSQIELRIIAALSEEDTMIESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVN 775

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + Y  G  AF  +++ T L+      L+ T
Sbjct: 776 FGIIY--GVSAF-GLSNQTNLSRTEAKELIDT 804


>gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis]
          Length = 1711

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 361  SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-ETGEDLYVTTYARSFNV 419
            S C+R+  +A  GK L+ AD + IE R+LA ++G++  + AF  +G D++ +  A  ++ 
Sbjct: 1445 SFCLRNIFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSGVDIFKSIAAMFYSE 1504

Query: 420  APA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN--------LNTFAHL---- 465
              +   VT  QR   K     + Y  GA+   +  +T+  +        +N++  +    
Sbjct: 1505 ISSIDDVTDKQRDTTKQTCYGILYGMGAQTLAQQMNTSETDAQNAMDSFMNSYPMVKVYF 1564

Query: 466  ------------VKTNSAPEEWEDAENFCRWMQENHPE-HAIEDLFIGTACERVKKAWRQ 512
                        ++T S    +       R    +H E  A+     G+A + VK A  +
Sbjct: 1565 NRLVAQCKEKGYIETISGRRRYLPEIKSVRLKMRSHAERQAVNSTIQGSAADIVKMATYK 1624

Query: 513  KHSRVSEL-WNELHQ 526
             H  V+ L WN LHQ
Sbjct: 1625 IHCAVASLGWNTLHQ 1639


>gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 815

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 25/219 (11%)

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           T G+  +    ++L+  LF    +     T+T     + S + L  Q    F   + A R
Sbjct: 578 TGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHR 637

Query: 286 SAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            A     T   L+E +  D R+  T     A+ TGR S      QN+P  + +   + ++
Sbjct: 638 DATKLRQTVEGLLETVAPDDRIHTTYSQTAAA-TGRLSSLHPNLQNIPVRTEAGRRIREV 696

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                            ++D V     A E   L+ AD + IE R++A ++ ++  ++AF
Sbjct: 697 F----------------VADEV-----AGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAF 735

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             GEDL+    ++ F V P +VT +QRA  K M   L Y
Sbjct: 736 REGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAY 774


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           + +R H    Q +T      ++DP+ LQ I         +R   IA +  K+V  D + I
Sbjct: 658 KTNRLHTSYHQAVTATGRLSSTDPN-LQNIPIRSEQGRKIRQAFIAPKDHKIVAIDYSQI 716

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  + AF  G+D++  T A  F V   +VT DQR   K +   L Y  G
Sbjct: 717 ELRIMAHLSNDKGLVTAFSEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIY--G 774

Query: 445 AKAF 448
             AF
Sbjct: 775 MSAF 778


>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 976

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q  T      +S+P+   I      S  +R   +  +G KL+ AD + IE
Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYSQIE 742

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A E+  + AF   +D++  T    F      +  D+R +GK +   + Y  G 
Sbjct: 743 LRILAHLANEEILINAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFGVIYGMGI 800

Query: 446 KAFQKMASTTGLN 458
           K F   A +TG++
Sbjct: 801 KKF---ARSTGVS 810


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           LQ+ G ++         P    P+  R H    Q +T      ++DP+ LQ I       
Sbjct: 666 LQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEG 724

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +  
Sbjct: 725 RRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPL 784

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             V+ +QR   K +   L Y  G  AF
Sbjct: 785 ESVSNEQRRSAKAINFGLIY--GMSAF 809


>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
 gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
          Length = 885

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H   +Q +T      +++P+ LQ I         +R  +++SEG  LV +D + I
Sbjct: 608 KTGRIHSRFNQTVTSTGRISSTEPN-LQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQI 666

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++ + + + AF  G D++  T +  F+    +V+ + R++ K +   + Y
Sbjct: 667 ELRVLASLSNDTYMINAFADGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVY 723


>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
 gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
          Length = 908

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 28/168 (16%)

Query: 277 FNNRMRASRSAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           F   + A R A+    T   L+ ++  DGR+R T Q   A+ TGR S      QN+P  +
Sbjct: 597 FLEHLLAHRDAIRLRQTVEGLLRSVADDGRIRTTFQQTIAA-TGRLSSADPNLQNIPIRT 655

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +  ++                         R+ V+      L+ AD + IE R++A ++
Sbjct: 656 DAGRQIR------------------------RAFVVGPGYATLLTADYSQIEMRIMAHLS 691

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           G++  + AF +GEDL+    +R F V   +VT   R+  K M   L Y
Sbjct: 692 GDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAMSYGLAY 739


>gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29]
 gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase
 gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29]
          Length = 607

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 9/121 (7%)

Query: 349 SITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           SIT  P      SD  VR C +A  G  +   D    E RVLA ++G++  ++AF+ G D
Sbjct: 363 SITGIPAQTLPASDWTVRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQAFKDGAD 422

Query: 408 LYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           L++ T   +F      +TKD  +R   K +     Y GGA     +A  TG+++ T   +
Sbjct: 423 LHLMTARAAFG---DHITKDDPERKYAKTVNFGRVYGGGANT---VAEQTGISIETAKQV 476

Query: 466 V 466
           V
Sbjct: 477 V 477


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32]
          Length = 891

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 9/155 (5%)

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360
           GRL   LQ+   S+         P        R H   +Q +T+     +S+P+ LQ I 
Sbjct: 587 GRL--ILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYNQAVTNTGRLSSSEPN-LQNIP 643

Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R   IA EG  ++ AD + IE RVLA ++ ++    AF   ED++  T A 
Sbjct: 644 IRSEEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDRVFCDAFAKDEDIHTRTAAE 703

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            F + P  VT + R   K +   + Y  G  +  K
Sbjct: 704 VFGLFPGMVTPEMRRQAKTINFGVIYGQGPFSLAK 738


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 25/148 (16%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  DG++         + TGR S      QN+P      +E+ +I           PD 
Sbjct: 599 VIEEDGKIHSNFN-QTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKIFI---------PDN 648

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                   R CVI S       AD + IE RVLA ++G++  + AF    D++  T +  
Sbjct: 649 --------RDCVILS-------ADYSQIELRVLAHISGDENLINAFINHNDIHTKTASEV 693

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGG 444
           FNV   +VT  QR+  K +   + Y  G
Sbjct: 694 FNVPLGEVTSTQRSNAKAVNFGIVYGIG 721


>gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
 gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
          Length = 880

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q IT      +++P+    P ++ +   +R   +  EG   V AD + IE RV
Sbjct: 606 RIHGKFNQTITATGRISSTEPNLQNIPARVELGRAIRKVFLPEEGYTFVDADYSQIELRV 665

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++G++  + A+E  +D++  T +  F V   QV+  QR   K +   + Y  G  AF
Sbjct: 666 LAHLSGDKNLIHAYEMEQDIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVY--GLSAF 723


>gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084]
 gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084]
          Length = 922

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 8/162 (4%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            TL +    DGR+R  L +   ++  + +     P ++ R  R H  L+Q +       +
Sbjct: 607 KTLEDLAQQDGRVRMILDYRERAKI-KSTYLDALPADIRRDGRIHTTLNQTVAATGRLSS 665

Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           S P+   I     +   VR+     EG   +  D + IE R+LA ++ +   + AF +G 
Sbjct: 666 SAPNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGA 725

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           D +  T AR F V   +VT   R+  K +   + Y  G +AF
Sbjct: 726 DFHAATAARVFGVPVEEVTPQLRSRAKAVNFGIVY--GQQAF 765


>gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
 gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
          Length = 891

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 113/281 (40%), Gaps = 34/281 (12%)

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           E LS  E  L ++   +   G  VDV    TL +    + T+  Q+      G   +   
Sbjct: 485 ELLSDIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVTQAQQDCWDAIGGDQINLGS 544

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            ++L+  LF   G+     T+T       +  +L  +    F   +   R A  KL   V
Sbjct: 545 PKQLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHPFLEALLRHRDAA-KLRVTV 603

Query: 296 EAM----NSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           E +    + DGR+  T LQ + A  TGR S      QN+P   R+ E             
Sbjct: 604 EGLQKSVSDDGRIHTTYLQTIAA--TGRLSSTEPNLQNVP--IRTEE------------- 646

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +  +G   L+ AD + IE RV+A ++G+   ++AF +GEDL+
Sbjct: 647 ----------GRRIRELFVVGDGYDALMSADYSQIEMRVMAHLSGDSGLIEAFRSGEDLH 696

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
               ++ F VAP  VT   R+  K M   L Y   A    K
Sbjct: 697 RFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYGLSAYGLSK 737


>gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 888

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 611 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 669

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  ++AF +GEDL+ T  ++ F V P  V  + R   K M   L Y  G 
Sbjct: 670 LRVMAHLSEDEGLIEAFTSGEDLHTTAASQVFAVEPTAVDAEMRRKIKAMSYGLAY--GL 727

Query: 446 KAF 448
            AF
Sbjct: 728 SAF 730


>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 885

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H   +Q +T      +++P+ LQ I         +R  +++SEG  LV +D + I
Sbjct: 608 KTGRIHSRFNQTVTSTGRISSTEPN-LQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQI 666

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++ + + + AF  G D++  T +  F+    +V+ + R++ K +   + Y
Sbjct: 667 ELRVLASLSNDTYMINAFADGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVY 723


>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
          Length = 928

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F++    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
 gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
          Length = 910

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 32/216 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT--- 293
           ++L+  LF + G+     T+T       +   L  +    F   + A R A+    T   
Sbjct: 565 KQLQEVLFDDLGMPKTRRTKTGYTTDADALADLYVKTEHPFLEHLLAHREAIRLRQTVEG 624

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+ ++  DGR+  T Q   A+ TGR S      QN+P   R+ E                
Sbjct: 625 LLRSVAPDGRIHTTFQQTIAA-TGRLSSADPNLQNIP--IRTEEGY-------------- 667

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+ AD + IE R++A ++G++  ++AF +GEDL+   
Sbjct: 668 ---------RIREGFVVGEGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYV 718

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            +R F V   +VT   R+  K M   L Y  G  AF
Sbjct: 719 GSRVFGVPTDEVTSAMRSKIKAMSYGLAY--GLSAF 752


>gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
 gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
          Length = 934

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVAD 380
           PQ   R  R H   +Q+ T      +++P+   I +       +R+  I +EG  L+ AD
Sbjct: 652 PQLADREGRVHTTFNQVGTATGRLSSTNPNLQNIPTRTALGREIRAAFIPAEGNVLLSAD 711

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R++A  + +   L A+ TG+D++  T A  F V P  + K+ R   K +   + 
Sbjct: 712 YSQIELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIV 771

Query: 441 Y 441
           Y
Sbjct: 772 Y 772


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+C IA  G +++ AD + IE R++A ++G+   L A+  GEDL+  T +        +
Sbjct: 361 MRACFIAPPGYQIIKADYSQIELRIVAEISGDAKMLDAYVKGEDLHTLTASLITGKLLEE 420

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           VT + R I K +   L Y  GA   Q  A
Sbjct: 421 VTTEDRRIAKSVNFGLIYGMGAAKLQAYA 449


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q  T      +S+P+   I      S  +R   +  +G KL+ AD + IE
Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYSQIE 742

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A E+  + AF   +D++  T    F      +  D+R +GK +   + Y  G 
Sbjct: 743 LRILAHLANEEILITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINFGVIYGMGI 800

Query: 446 KAFQKMASTTGLN 458
           K F   A +TG++
Sbjct: 801 KKF---ARSTGVS 810


>gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
 gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 16/191 (8%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +R  L++ G ++         P Q      R H +  Q +       +++P+ LQ I   
Sbjct: 648 IRNILEYRGLAKLKSTYVDALPLQVEESTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIR 706

Query: 361 ---SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 VR   I  ++   L+ AD + IE R++A ++ E+  ++AF+ GED++ +T ++ 
Sbjct: 707 TERGRQVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIEAFKNGEDIHASTASKV 766

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V   +VT+ QR+  K +   + Y  G  AF  +++ T L+      L+ T      +E
Sbjct: 767 FGVPIEEVTRAQRSNAKTVNFGIIY--GVSAF-GLSNQTDLSRGEAKELIDTY-----YE 818

Query: 477 DAENFCRWMQE 487
                 ++M E
Sbjct: 819 TYPKLKKYMSE 829


>gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG]
 gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF]
          Length = 914

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 637 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIE 695

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  + AF +GEDL+ T     FNV P  V  + R   K M   L Y  G 
Sbjct: 696 LRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAY--GL 753

Query: 446 KAF 448
            AF
Sbjct: 754 SAF 756


>gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82]
 gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82]
          Length = 930

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAG 383
           + +  R H   +Q IT      +++P+    P++I +   +R   +  EG + + AD + 
Sbjct: 651 IAKDGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA M+G++  ++A+   +D++  T ++ F++   +VT  QR   K +   + Y
Sbjct: 711 IELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVY 768


>gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
 gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
          Length = 878

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      ++DP+    P+++ +   +R   I  +G   V AD + IE R
Sbjct: 603 GRIHGTFNQTITATGRISSTDPNLQNIPMKLELGRLIRKAFIPEDGYVFVDADYSQIELR 662

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA ++ +Q    AF    D++ TT +  F+V   QVT  QR   K +   + Y  G  A
Sbjct: 663 VLAHLSEDQVMQNAFLNHVDIHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVY--GISA 720

Query: 448 F 448
           F
Sbjct: 721 F 721


>gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 920

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   +  EG   V AD + IE R
Sbjct: 645 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGREIRKVFVPKEGCVFVDADYSQIELR 704

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA M+G++  ++A+ + +D++  T +  F+V   +VT  QR   K +   + Y  G  A
Sbjct: 705 ILAHMSGDERLIEAYRSAQDIHAITASEVFHVPLGEVTPLQRRNAKAVNFGIVY--GISA 762

Query: 448 F 448
           F
Sbjct: 763 F 763


>gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 939

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 25/171 (14%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +TL   +N+  +   T   L A+ TGR +      QN+P  +   +E             
Sbjct: 649 DTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQNIPIKNIEGKE------------- 695

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +RS  ++ +  KL+ AD + IE R+LA M   +   KAF   ED++  
Sbjct: 696 ------------IRSAFVSDKNSKLISADYSQIEMRILAHMGDVKELKKAFLNKEDIHTL 743

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           T ++ F+V+  +V +D R   K +   + Y   +    K  S +      F
Sbjct: 744 TASQIFDVSLKKVDEDMRRKAKAINFGIIYGISSYGLAKQISVSNSEAENF 794


>gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4]
          Length = 930

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAG 383
           + +  R H   +Q IT      +++P+    P++I +   +R   +  EG + + AD + 
Sbjct: 651 IAKDGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA M+G++  ++A+   +D++  T ++ F++   +VT  QR   K +   + Y
Sbjct: 711 IELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVY 768


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q +T      +S+P+ LQ I         +R   I  EG +   AD + 
Sbjct: 653 PATGRIHTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDEGCEFFSADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++ +   ++AF+  +D++  T A+ + V   +VT++QR+  K     + Y
Sbjct: 712 IELRIMAHLSNDPHMIEAFQKDQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGIIY 769


>gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 477

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 200 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 258

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ +   ++AF +GEDL+ T  ++ F VA ++V  + R   K M   L Y  G 
Sbjct: 259 LRVMAHLSEDDGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMSYGLAY--GL 316

Query: 446 KAFQKMASTTGLNLNTFAHLVKT 468
            AF  ++   G+  +    L+ T
Sbjct: 317 SAF-GLSGQLGIGADEARRLMDT 338


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      ++DP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 649 RVHTSYHQALTATGRLSSTDPNLQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRL 708

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +    VT DQR   K +   L Y
Sbjct: 709 MAHFSQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY 761


>gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1]
          Length = 926

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAG 383
           + +  R H   +Q IT      +++P+    P++I +   +R   +  EG + + AD + 
Sbjct: 647 IAKDGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQ 706

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA M+G++  ++A+   +D++  T ++ F++   +VT  QR   K +   + Y
Sbjct: 707 IELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVY 764


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G +++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 10/135 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P+  R H + +Q +T      +S+P+   I      S  +R   I  +   LV AD + I
Sbjct: 674 PQTGRVHTDFNQAVTTTGRLSSSNPNLQNIPIRTEFSRQIRKAFITQDDWLLVSADYSQI 733

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E   L+A++  +D++  T    F+     +T ++R+IGK +   + Y  G
Sbjct: 734 ELRILAHLSQEPVLLEAYQNYQDVHRVTAQLLFD--KEVITSEERSIGKTINFGVIYGMG 791

Query: 445 AKAFQKMASTTGLNL 459
           A   Q+ A + GL+ 
Sbjct: 792 A---QRFARSMGLSF 803


>gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201]
 gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201]
          Length = 960

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 21/148 (14%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L +A+  DGR+  T Q   A+ TGR S      QN+P  +   + +  +       +  D
Sbjct: 671 LRDAIAEDGRIHTTYQQTVAA-TGRLSSTGPNLQNIPVRTEQGQRIRDVFV-----VGED 724

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
               Q   +C            L+ AD + IE R++A ++G++  ++AF  GEDL+    
Sbjct: 725 ---TQGPFEC------------LMTADYSQIEMRIMAHLSGDEGLIEAFRGGEDLHRFVG 769

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +R F+VAP  VT   R+  K M   L Y
Sbjct: 770 SRVFDVAPEDVTPQMRSKVKAMSYGLVY 797


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q  T      +S+P+   I      S  +R   +  +  KL+ AD + IE
Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNCKLLSADYSQIE 742

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A E+  + AF   +D++  T    F     Q++ D+R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFGVIYGMGI 800

Query: 446 KAFQKMASTTGLN 458
           K F   A +TG++
Sbjct: 801 KKF---ARSTGVS 810


>gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 462

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P   R H    Q         +SDP+ LQ I         +R   +A  G+KL+
Sbjct: 176 LPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN-LQNIPIRTDDGRRIRRAFVAPSGRKLI 234

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             D + IE R++A ++G+   + AFE+G D++    A  F     +VT ++R   K +  
Sbjct: 235 ACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF 294

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 295 GLIY--GMSAF 303


>gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 894

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADL 381
           Q +    R H   +Q IT      +++P+    P+++ +   +R   +  +G   + AD 
Sbjct: 613 QYISEDGRIHGTFNQTITATGRISSTEPNLQNIPIRMEMGKAIRKVFVPKDGFVFLDADY 672

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA M+G++  ++A+ +  D++  T A+ F V   +VT +QR   K +   + Y
Sbjct: 673 SQIELRILAHMSGDEKLIEAYNSSADIHRATAAQVFGVPLEEVTDEQRRNAKAVNFGIIY 732

Query: 442 QGGAKAF 448
             G  +F
Sbjct: 733 --GMSSF 737


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      ++DP+   I     I   +R   IA EG+ L+ AD + IE R+
Sbjct: 649 RVHTSYHQALTATGRLSSTDPNLQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRL 708

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A  + +   + AF+ G+D++  T A    +    VT DQR   K +   L Y
Sbjct: 709 MAHFSQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY 761


>gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 884

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382
           P   R H   +Q++T      +SDP+ LQ I         +R+     EG   LV AD +
Sbjct: 605 PETHRIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGEGFDTLVSADYS 663

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   + Y
Sbjct: 664 QIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIY 722


>gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
 gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
          Length = 895

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++A N  DGR+  T +   A+ TGR S      QN+P                   
Sbjct: 606 VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP------------------- 645

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
              DP   +I     RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G+D 
Sbjct: 646 -NRDPAGREI-----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDF 699

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  + +    +T DQR+  K M   L Y
Sbjct: 700 HKYVASLVYGIPVDDITSDQRSHVKAMSYGLAY 732


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGIE 385
           R  R H   +Q +       +S+P+    P++ +    +R   IA  G  +V AD + IE
Sbjct: 623 RTGRIHTSYNQTVAATGRLSSSNPNLQNIPIRTLEGKRIRQAFIAPPGWAIVSADYSQIE 682

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA ++ +   + AF  GED++  T A  F V P  +  + R   KV+   + Y  G 
Sbjct: 683 LRVLAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPEMINAEMRRQAKVINFGVLY--GM 740

Query: 446 KAF 448
            AF
Sbjct: 741 SAF 743


>gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
           IT +P       D L      VR C +A EG+ +   D    E RVLA ++G++  ++AF
Sbjct: 360 ITGIPAQTLPSGDWL------VRRCFLADEGELMASVDYQAQELRVLAALSGDRTMIQAF 413

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             G DL++ T   ++     ++TKD  +R   K +     Y GGAK    +A  TGL++ 
Sbjct: 414 RDGADLHLMTARAAW--PDREITKDSPERKYAKTVNFGRVYGGGAKT---VAEQTGLDME 468

Query: 461 TFAHLV 466
               +V
Sbjct: 469 AAKQVV 474


>gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 884

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382
           P   R H   +Q++T      +SDP+ LQ I         +R+     EG   LV AD +
Sbjct: 605 PETHRIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGEGFDTLVSADYS 663

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   + Y
Sbjct: 664 QIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIY 722


>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
 gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
 gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
 gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120]
          Length = 810

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 532 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 590

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 591 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 648

Query: 444 GAKAF 448
           G  AF
Sbjct: 649 GMSAF 653


>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
 gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G  ++ AD + IE R++A ++ +   ++AF  G+D++  T A  F ++  Q
Sbjct: 667 IREAFIAPSGWYIISADYSQIELRIMAHISQDAGLIRAFLGGQDIHSATAAEVFGISVGQ 726

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V  +QR   KV+   L Y  G   F  +A+  G++
Sbjct: 727 VNAEQRRYAKVINFGLIY--GMSEF-GLATQLGID 758


>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
 gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
 gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
           exonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
 gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Shigella flexneri 2930-71]
          Length = 884

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 606 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 664

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 722

Query: 444 GAKAF 448
           G  AF
Sbjct: 723 GMSAF 727


>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
 gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
 gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus]
          Length = 889

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T     AS TGR S      QN+P  + +  +            
Sbjct: 603 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 649

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  I  +G  +L+ AD + IE RV+A ++ +   ++A++ GEDL+
Sbjct: 650 -------------IRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLH 696

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F+V   QVT + R   K M   L Y  G  AF
Sbjct: 697 NYVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 733


>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
 gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
           exonuclease [Shigella flexneri 2a str. 301]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
 gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
 gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
 gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
 gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
 gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70]
 gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
          Length = 916

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 638 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 696

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 697 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 754

Query: 444 GAKAF 448
           G  AF
Sbjct: 755 GMSAF 759


>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
 gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
 gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
 gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
 gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
 gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
 gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
 gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
 gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
 gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
 gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli S88]
 gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
 gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
 gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
 gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
 gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
 gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
 gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
 gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
 gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933]
 gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
 gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
 gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
 gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
 gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
 gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
 gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
 gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
 gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
 gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
 gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
 gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
 gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
 gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
 gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
 gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
 gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
 gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
 gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9]
 gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B]
 gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
 gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736]
 gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
 gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
 gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
 gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
 gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
 gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K12 substr.
           W3110]
 gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
 gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
 gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
 gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
 gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
 gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
 gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
 gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli 55989]
 gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI1]
 gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
 gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Escherichia coli BL21(DE3)]
 gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
 gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
 gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
 gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
 gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
 gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
 gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
 gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
 gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
 gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
 gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
 gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
 gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
          Length = 884

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 606 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 664

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 722

Query: 444 GAKAF 448
           G  AF
Sbjct: 723 GMSAF 727


>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
 gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
 gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H   +Q +T      +S+P+ LQ I         +R   I  EG     AD + I
Sbjct: 643 RTGRIHTSFNQTVTATGRLSSSEPN-LQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQI 701

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RV+A ++G+   ++AF  G D++  T A+ +  A   VT+D+R   K     + Y
Sbjct: 702 ELRVMAHLSGDAHMIEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIY 758


>gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
 gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
          Length = 879

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T     AS TGR S      QN+P  + +  +            
Sbjct: 593 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 639

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  I  +G  +L+ AD + IE RV+A ++ +   ++A++ GEDL+
Sbjct: 640 -------------IRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLH 686

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F+V   QVT + R   K M   L Y  G  AF
Sbjct: 687 NYVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 723


>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
 gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli ED1a]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
 gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI39]
          Length = 928

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G+K++ AD + IE R++A ++ ++  L AF  G+D++  T A  F     +
Sbjct: 681 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGAHFEE 740

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAG 383
           PR    H   +Q +T      +S+P+       L++     ++ V    G+ L+ AD + 
Sbjct: 602 PRTGSLHTSFNQTVTATGRLSSSEPNLQNIPVRLELGRRLRKAFVPHGPGRLLLAADYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++G++  + AF  GED++  T A  F V   +VT   R   K +   + Y
Sbjct: 662 IELRILAHISGDEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNFGIVY 719


>gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
 gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
           [Shigella flexneri 2002017]
 gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671]
 gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71]
 gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
 gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024]
          Length = 881

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
 gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
 gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
 gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
 gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
 gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 7/122 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q +T      +S+P+ LQ I         +R   I  +G ++  AD + 
Sbjct: 611 PETGRVHTSFNQNVTATGRLSSSNPN-LQNIPIRTPEGKRIREAFIPRKGWEMFCADYSQ 669

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA ++ +++ ++ F++GED++  T +  F + P  VT + R   K +   + Y  
Sbjct: 670 IELRILAHLSQDEFLIELFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAINFGIIYGM 729

Query: 444 GA 445
           GA
Sbjct: 730 GA 731


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ +         +R   +  EG + L+ AD + IE
Sbjct: 635 GRIHTTFNQTVAATGRLSSTDPN-LQNVHVRTEEGRAIRRGFVVGEGFESLLTADYSQIE 693

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  ++AF +GEDL+ T  ++ F VA ++V  + R   K M   L Y  G 
Sbjct: 694 LRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMSYGLAY--GL 751

Query: 446 KAF 448
            AF
Sbjct: 752 SAF 754


>gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 884

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 606 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 664

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 722

Query: 444 GAKAF 448
           G  AF
Sbjct: 723 GMSAF 727


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 7/125 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISD----CVRSCVIASEGKKLVVADLAGI 384
           P   R H +L Q  T      + DP+   I I D     +RS  + +EG   + AD + I
Sbjct: 633 PETGRIHTQLIQTGTATGRLSSKDPNLQNIPIRDEDGRRIRSAFVPAEGNLFISADYSQI 692

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E  VLA ++ +    +AF +G D++  T +  F+V+ A V+ +QR I K +   + Y  G
Sbjct: 693 ELVVLAHLSEDPELSQAFRSGGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMY--G 750

Query: 445 AKAFQ 449
             AF+
Sbjct: 751 MSAFR 755


>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
 gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
          Length = 881

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 32/216 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L+  LF + G+     T+T   T  + +    K+ P     +  + R S+     +  
Sbjct: 536 KQLQEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYLLKFRESQKMKSTVEG 595

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++A+  DGR+  T     A+ TGR S      QN+P  +                    
Sbjct: 596 LIKAVADDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTE------------------- 635

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG  +L+ AD + IE RV+A ++ +   ++A+  GEDL+   
Sbjct: 636 ------FGRRIREAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEAYRQGEDLHNYV 689

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            ++ F V   +VT + R   K M   L Y  G  AF
Sbjct: 690 GSKVFGVGIDEVTPELRRRVKAMSYGLAY--GLSAF 723


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G +++ AD + IE R++A ++ +   LKAF  GED++  T +  F V    
Sbjct: 666 IREAFIAPSGYRIISADYSQIELRIMAHISQDAGLLKAFAQGEDIHRATGSEIFGVPLET 725

Query: 424 VTKDQRAIGKVMELALGY 441
           V  +QR   K++   L Y
Sbjct: 726 VNSEQRRYAKIINFGLIY 743


>gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
 gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
          Length = 948

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++A N  DGR+  T +   A+ TGR S      QN+P                   
Sbjct: 659 VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP------------------- 698

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
              DP   +I     RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G+D 
Sbjct: 699 -NRDPAGREI-----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDF 752

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  + +    +T DQR+  K M   L Y
Sbjct: 753 HKYVASLVYGIPVDDITSDQRSHVKAMSYGLAY 785


>gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 882

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T     AS TGR S      QN+P  + +  +            
Sbjct: 596 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 642

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  I  +G  +L+ AD + IE RV+A ++ +   ++A++ GEDL+
Sbjct: 643 -------------IRSVFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLH 689

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F+V   QVT + R   K M   L Y  G  AF
Sbjct: 690 NYVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 726


>gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEG-KKLVVADLAGIEA 386
            R H   +Q +       ++DP+   I     +   +R   +  EG ++L+ AD + IE 
Sbjct: 651 GRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDVGRRIRRAFVVGEGYEELLTADYSQIEL 710

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A ++GEQ  + AF +G D +    A+ F+V   QV  + R+  K M   L Y
Sbjct: 711 RIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSYGLAY 765


>gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
 gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 46/82 (56%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   +A  G  ++ AD + IE R++A ++ ++  L+AF  G D++  T A  F +  A+
Sbjct: 676 VRRAFVAPPGHVILSADYSQIELRIMAHISEDEGLLRAFSEGLDVHRATAAEVFGMPLAE 735

Query: 424 VTKDQRAIGKVMELALGYQGGA 445
           VT +QR   KV+   L Y  GA
Sbjct: 736 VTSEQRRYAKVINFGLIYGMGA 757


>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
 gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
          Length = 934

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      +SDP+ LQ I         +R   IA +   ++ AD + 
Sbjct: 655 PQSGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPKDYIILAADYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  LKAF  G+D++  T A  F     +V+ +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSKDEGLLKAFAEGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
 gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
          Length = 971

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
            R H   +Q+I       ++DP+ LQ I           R+ V+    + L+ AD + IE
Sbjct: 694 GRIHTTFNQMIAATGRLSSTDPN-LQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIE 752

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            R++A ++G+   ++AF +GEDL+    A++FN+  A+V  + R   K M   L Y
Sbjct: 753 MRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYGLAY 808


>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 933

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 28/215 (13%)

Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300
            +R+L++ +K T  A + FN     +++A     LKL  +V              EA+  
Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIAD 624

Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
              L R  L++ G S+         P    P+  R H    Q         +SDP+ LQ 
Sbjct: 625 QHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683

Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T 
Sbjct: 684 IPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATA 743

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A  F      V+ D+R   K +   L Y  G  AF
Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776


>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1]
 gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1]
          Length = 908

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 32/170 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
           F   + A R A    + ++ L+ A+ SDGR+  T  Q + A  TGR S      QN+P  
Sbjct: 603 FLQHLLAHRDATRLKVTVDGLLNAVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 660

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
           + +                            +R   +  +G  +L+ AD + IE R++A 
Sbjct: 661 TEAGRR-------------------------IRDAFVVGDGYGELMTADYSQIEMRIMAH 695

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ ++  ++AF TGEDL+    +R+F+V   +VT + R   K M   L Y
Sbjct: 696 LSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAY 745


>gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
 gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
          Length = 890

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 43/268 (16%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------VSSSRCLEKLKTWLFL 245
           + + G+ VDVA   T  +++ VE  ++ QE+    YG       ++S+R   +L   LF 
Sbjct: 503 MENEGFQVDVAGVRTFGEMLQVEIERITQEI----YGYAGEEFNINSTR---ELGAILFD 555

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           + GL     T+T     +   +KL P+   A  V   R + ++ +   +  L++    D 
Sbjct: 556 KLGLPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYR-KLTKLSSTYVTGLLKVTGPDQ 614

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R+    +    +RTGR S      QN+P           I T L + +            
Sbjct: 615 RVHSVFR-QTETRTGRISSTEPNMQNIP-----------IRTELGSQM------------ 650

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   +A  G  L+ AD + IE R+LA ++ +   + AF  G D++  T ++ F V   
Sbjct: 651 --RKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQVFGVPAE 708

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +  + R   K +   + Y  GA +  +
Sbjct: 709 VLPAELRRRAKAINFGIVYGIGAYSLSQ 736


>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
 gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
          Length = 945

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 27/151 (17%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L + +N D GR+  +    GAS TGR +      QN+P   RS E             
Sbjct: 658 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 701

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   IA EGK LV  D + IE R+LA +AG     +AF  G D++ 
Sbjct: 702 ----------GRRIREAFIAEEGKVLVALDYSQIELRILAHVAGIDSLKQAFRDGHDIHA 751

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  F+V   ++T D R   K +   + Y
Sbjct: 752 MTASEMFDVPLDEMTADVRRQAKAINFGVIY 782


>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 772

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 494 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 552

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 553 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 610

Query: 444 GAKAF 448
           G  AF
Sbjct: 611 GMSAF 615


>gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 913

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 29/156 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DGR+  T     A+ TGR S      QN+P   R+ E                
Sbjct: 628 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 668

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T 
Sbjct: 669 -------GRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTV 721

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            ++ F VA ++V  + R   K M   L Y  G  AF
Sbjct: 722 ASQVFGVATSEVDAEMRRKIKAMSYGLAY--GLSAF 755


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 6/138 (4%)

Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           VR   IA +    L+ AD + IE R++A ++ E   +++F  GED++  T A+ FNV   
Sbjct: 688 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIESFLHGEDIHRATAAKVFNVPLE 747

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT++QR+  K +   + Y  G  AF  +++ T L+ +    L+ T  A   + +  N+ 
Sbjct: 748 EVTREQRSHAKTVNFGIIY--GVSAF-GLSAQTDLSRSESKELIDTYYA--TYPNLRNYI 802

Query: 483 RWMQENHPEHAIEDLFIG 500
               E   EH   +  +G
Sbjct: 803 NRQIEFAREHGYVETILG 820


>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 928

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKSGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
 gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
          Length = 908

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 32/170 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
           F   + A R A    + ++ L+ A+ SDGR+  T  Q + A  TGR S      QN+P  
Sbjct: 603 FLQHLLAHRDATRLKVTVDGLLNAVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 660

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
           + +                            +R   +  +G  +L+ AD + IE R++A 
Sbjct: 661 TEAGRR-------------------------IRDAFVVGDGYGELMTADYSQIEMRIMAH 695

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ ++  ++AF TGEDL+    +R+F+V   +VT + R   K M   L Y
Sbjct: 696 LSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAY 745


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H + +Q  T      +S+P+   I      S  +R   +  EG  +V AD + I
Sbjct: 715 PDTGRVHTDFNQAATGTGRLSSSNPNLQNIPIRTEFSRQIRKAFLPKEGWLMVSADYSQI 774

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +  E   ++A++T +D++  T    F      VT D+R +GK +   + Y  G
Sbjct: 775 ELRILAHLTQEPVLVEAYKTNQDVHTVTAKLLFE--KETVTPDERRLGKTINFGVIYGMG 832

Query: 445 AKAFQK 450
           A+ F +
Sbjct: 833 AQRFAR 838


>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297]
 gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
          Length = 933

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 45/268 (16%)

Query: 192 INDRGYCVDVALAHTLN-----QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           I + G  +DV   H L+      + D+ER   D  L  + + L S     ++L   LF  
Sbjct: 543 IEENGVKLDVEFVHELSTRFKRDLEDIERQAHD--LAGVEFNLDSP----KQLADVLFER 596

Query: 247 TGLHLEDLTET----TCQRVLS--SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            GL ++  T +    T + VL+  + +   P+ I       +   +    L T+    + 
Sbjct: 597 MGLPVKSKTASGAPSTNEEVLTELAAEHELPRLILQSRRLRKLVGTYTDPLPTMTIDHDG 656

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           D RL  T    GA +TGR +      QN+P   RS E                       
Sbjct: 657 DQRLHTTYNQTGA-QTGRLNSNDPNLQNIP--VRSEE----------------------- 690

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   +A +G ++V AD + IE R++  ++ +   ++AF  G+D++  T A    + 
Sbjct: 691 GRSIRKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIE 750

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAF 448
             QV+ +QR   K +   L Y  G  AF
Sbjct: 751 EEQVSAEQRRSAKAINFGLIY--GMSAF 776


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F      
Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 742 VTTEQRRRAKAVNFGLIY--GMSAF 764


>gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
 gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
          Length = 915

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 35/252 (13%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLE 252
           G   D A   +L +  D +     Q+  +  Y ++     L   ++L+  LF + G+   
Sbjct: 524 GIATDGAYLSSLEKSFDAQV----QDAAAEAYAVIGREVNLGSPKQLQEVLFDQLGMPKT 579

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT---LVEAMNSDGRLRGTLQ 309
              +T      +S   L  +    F   + A R A+    T   L+ ++  DGR+  T Q
Sbjct: 580 KKIKTGYTTDAASLTDLFARTQHPFLEHLLAHRDAIRLRQTVEGLLRSVAPDGRIHTTFQ 639

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
              A+ TGR S      QN+P  + +  ++                         R+ V+
Sbjct: 640 QTIAA-TGRLSSADPNLQNIPIRTEAGRQIR------------------------RAFVV 674

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
               + L+ AD + IE R++A ++G++  + AF +GEDL+    +R F V   +VT   R
Sbjct: 675 GDGYETLLTADYSQIEMRIMAHLSGDEGLIDAFRSGEDLHSYVGSRVFGVPTDEVTPAMR 734

Query: 430 AIGKVMELALGY 441
           +  K M   L Y
Sbjct: 735 SKIKAMSYGLAY 746


>gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6]
          Length = 857

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGI 384
           P   R H    Q        I+++PD    P++      +R   I + G +++ AD + I
Sbjct: 579 PVTGRVHPTFQQTYAATGRLISTNPDIQKTPVRTPEGKRIRRAFIPAPGWRIISADWSQI 638

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA  + +   L+AF   ED++  T A  F   P  VT  QR++ K +  A  Y  G
Sbjct: 639 ELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDAQRSVAKTVNFATIYGQG 698

Query: 445 AKAF 448
           A A 
Sbjct: 699 ATAL 702


>gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 808

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 132/360 (36%), Gaps = 96/360 (26%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR +      QN+PRP                    D D  +I     R+  +   G
Sbjct: 518 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 552

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           K L   D +G E R++AW +G++   + F TG D++  T +        ++ K +R   K
Sbjct: 553 KILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKPEDEIVKKERTDAK 612

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                + Y G                                               EHA
Sbjct: 613 AGNFGISYGGT----------------------------------------------EHA 626

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551
           ++  F      + K   R+     +++ N +  A+++  E  + I+  AR++  V  +Y 
Sbjct: 627 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 679

Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  + +LP   S   RD G+  R   NT  +    +     K+   I +++ +   
Sbjct: 680 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 730

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS---MLYHLMTSNPSWAKGLPLKAEG 667
            EG++    A  D++  +HDEI+ E  D  E   +    +  +M   P     +P++AEG
Sbjct: 731 -EGVLAHGSA--DMIAQIHDEIIFEIDDDPEIVVAAEKQIKQVMEQPPVPGFPVPIEAEG 787


>gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
 gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
          Length = 961

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H +L+Q++T      +++P+    P+++ +   +R   +  EG   V AD + IE R+
Sbjct: 687 RIHCKLNQLVTATGRLSSTEPNLQNIPIRMELGKRIRKAFVPKEGYVFVDADYSQIELRI 746

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +A ++G++  +KA++  ED++  T +  F V   +VT  QR   K +   + Y
Sbjct: 747 MAHLSGDEELIKAYQGEEDIHRITASHVFGVPLDEVTDLQRRNAKAVNFGIIY 799


>gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1]
 gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1]
          Length = 923

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G+KL+  D + IE R++A ++G+   + AFE+G D++    A  F     +
Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT ++R   K +   L Y  G  AF
Sbjct: 742 VTPNERRAAKAINFGLIY--GMSAF 764


>gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 308

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
            T ++ +R  TYG KL ENIV+A SRD+LAE M         IV+ +HD  V + P
Sbjct: 4   NTVKKWSRIETYGAKLVENIVKAASRDLLAEAMRRLEATSNSIVMHIHDFAVIDAP 59


>gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
 gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
          Length = 1042

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 8/118 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIASEG-KKLVVADLAG 383
           R SR H   +Q +       ++DP+ LQ I +       +R   +AS+G + L+ +D + 
Sbjct: 763 RDSRIHTTFEQTVAATGRLSSTDPN-LQNIPNRNVEGREIRGAFVASDGFESLLSSDYSQ 821

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +E R++A ++G++  ++AF +G D +    +  + +   Q++ DQR+  K M   L Y
Sbjct: 822 VELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPIDQISSDQRSHIKAMSYGLAY 879


>gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 905

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 29/156 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DGR+  T     A+ TGR S      QN+P   R+ E                
Sbjct: 620 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 660

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T 
Sbjct: 661 -------GRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTV 713

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            ++ F VA ++V  + R   K M   L Y  G  AF
Sbjct: 714 ASQVFGVATSEVDAEMRRKIKAMSYGLAY--GLSAF 747


>gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F      
Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 742 VTTEQRRRAKAVNFGLIY--GMSAF 764


>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
 gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
          Length = 928

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTRRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 859

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 29/153 (18%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R+  IA   + ++ AD + IE R++A ++ ++  L AF  G D++  T A  F++A  
Sbjct: 618 LIRTAFIAPPEQVILAADYSQIELRIMAHLSQDENLLTAFANGWDIHTATAAEIFHIARE 677

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT +QR   K +   L Y  G  AF  +A   G+                E +DA+N+ 
Sbjct: 678 EVTSEQRRRAKAVNFGLIY--GMSAF-GLAKQIGV----------------ERQDAQNYI 718

Query: 483 RWMQENHP----------EHAIEDLFIGTACER 505
               + +P          + A E  ++ T C R
Sbjct: 719 DTYFQRYPKVLEYMNRTRQQAHEQGYVETLCGR 751


>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 933

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 28/215 (13%)

Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300
            +R+L++ +K T  A + FN     +++A     LKL  +V              EA+  
Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIAD 624

Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
              L R  L++ G S+         P    P+  R H    Q         +SDP+ LQ 
Sbjct: 625 QHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683

Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T 
Sbjct: 684 IPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATA 743

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A  F      V+ D+R   K +   L Y  G  AF
Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776


>gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 918

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 641 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFEALMTADYSQIE 699

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  + AF +GEDL+ T     F V PA V  + R   K M   L Y  G 
Sbjct: 700 LRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFGVEPAAVDAEMRRKIKAMSYGLAY--GL 757

Query: 446 KAF 448
            AF
Sbjct: 758 SAF 760


>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 923

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P   R H    Q         +SDP+ LQ I         +R   +A  G+KL+
Sbjct: 637 LPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN-LQNIPIRTDDGRRIRRAFVAPSGRKLI 695

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             D + IE R++A ++G+   + AFE+G D++    A  F     +VT ++R   K +  
Sbjct: 696 ACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF 755

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 756 GLIY--GMSAF 764


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G+K++ AD + IE R++A ++ +   LKAF  G+D++  T A  F      
Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 742 VTTEQRRRAKAVNFGLIY--GMSAF 764


>gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
 gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
          Length = 890

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +++P+    P+++ +   +R   +  EG  L+ AD + IE R
Sbjct: 615 GRIHGTFNQTITATGRISSTEPNLQNIPVRMELGREIRKVFVPQEGCVLLDADYSQIELR 674

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA M+G++  + A+   ED++  T +  F+V   +VT  QR   K +   + Y  G  A
Sbjct: 675 VLAHMSGDERLIDAYRMAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVY--GISA 732

Query: 448 F 448
           F
Sbjct: 733 F 733


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+    P++   S  +R   +  E  +L+ AD + IE R
Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWQLLSADYSQIELR 754

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +L  ++GE+   +AF  G+D++  T AR   +   +V+ D+R +GK +   + Y  GA  
Sbjct: 755 ILTHLSGEEVLQEAFRNGDDVHALT-ARLL-LDKDEVSSDERRLGKTINFGVIYGMGA-- 810

Query: 448 FQKMASTTGLN 458
            Q+ A +TG++
Sbjct: 811 -QRFARSTGVS 820


>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
 gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
          Length = 912

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+   ++AF TGEDL+    +R+F V   
Sbjct: 671 IRDGFVVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIE 730

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
           +VT + R   K M   L Y  G  AF
Sbjct: 731 EVTPELRRRVKAMSYGLAY--GLSAF 754


>gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4]
          Length = 877

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +++P+    P+++ +   +R   +   G   + AD + IE R
Sbjct: 602 GRIHSRFNQTITATGRISSTEPNLQNIPIRMELGREIRKVFVPRNGFLFLDADYSQIELR 661

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA M+G++  ++A++T +D++  T ++ F++   +VT  QR   K +   + Y  G  A
Sbjct: 662 VLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTPLQRRNAKAVNFGIVY--GISA 719

Query: 448 F 448
           F
Sbjct: 720 F 720


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD--PLQIISD---CVRSCVIASEGKKLVVADLAGIE 385
           +  R H    Q +       +SDP+   + I +D    +R   IA  G K+V AD + IE
Sbjct: 631 KTGRVHTSYHQAVAATGRLSSSDPNLQNIPIKTDEGRRIRQAFIAPAGYKMVAADYSQIE 690

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++ +    KAF  G D++ +T A  F  A   V+ +QR   K +   L Y  G 
Sbjct: 691 LRIMAHLSNDPGLQKAFAEGLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIY--GM 748

Query: 446 KAF 448
            AF
Sbjct: 749 SAF 751


>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 930

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   +  EG   V AD + IE R
Sbjct: 655 GRIHGKFNQTITATGRISSTEPNLQNIPVRMALGREIRKVFVPKEGCVFVDADYSQIELR 714

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA M+G++  ++A+ + +D++  T ++ F+V   +VT  QR   K +   + Y  G  A
Sbjct: 715 ILAHMSGDERLIEAYRSAQDIHAITASQVFHVPLDEVTPLQRRNAKAVNFGIVY--GISA 772

Query: 448 F 448
           F
Sbjct: 773 F 773


>gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 884

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 29/156 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DGR+  T     A+ TGR S      QN+P   R+ E                
Sbjct: 599 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 639

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T 
Sbjct: 640 -------GRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTV 692

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            ++ F VA ++V  + R   K M   L Y  G  AF
Sbjct: 693 ASQVFGVATSEVDAEMRRKIKAMSYGLAY--GLSAF 726


>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
 gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 923

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P   R H    Q         +SDP+ LQ I         +R   +A  G+KL+
Sbjct: 637 LPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN-LQNIPIRTDDGRRIRRAFVAPSGRKLI 695

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             D + IE R++A ++G+   + AFE+G D++    A  F     +VT ++R   K +  
Sbjct: 696 ACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF 755

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 756 GLIY--GMSAF 764


>gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis]
 gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis]
          Length = 267

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  +V AD + IE R++A ++ +   L AF   ED++  T A  F V  A 
Sbjct: 28  IREAFVAPPGSHIVSADYSQIELRIMAHLSQDAGMLSAFANNEDIHRATAAEIFGVERAA 87

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           V  +QR   KV+   L Y  G  AF
Sbjct: 88  VDSEQRRYAKVINFGLIY--GMSAF 110


>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
 gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
           exonuclease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 867

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q++T      ++DP+    P++  +    R   I  EG   + AD + +E R
Sbjct: 592 GRIHGHFNQMVTATGRISSTDPNLQNIPIRTEMGRRFRRVFIPKEGSIFIDADYSQVELR 651

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++G++  ++A++  +D++  T +  F+V  ++VT   R   K +   + Y  G  A
Sbjct: 652 ILAALSGDEKLIRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVY--GISA 709

Query: 448 F 448
           F
Sbjct: 710 F 710


>gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 884

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 606 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 664

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 722

Query: 444 GAKAF 448
           G  AF
Sbjct: 723 GMSAF 727


>gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 884

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 35/236 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   LFL+  L     T+T     +   + L+ Q  Q+  N +   + A LK NT V+
Sbjct: 540 KQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYRKLAKLK-NTYVD 598

Query: 297 AM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +      D R+      +G + TGR S      QN+P   ++ E +             
Sbjct: 599 PIPKMVKFDDRIHTCYHQIG-TVTGRLSSSDPNLQNIP--VKTEEGIR------------ 643

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      +R   IA +G KL+  D + +E RVLA ++ ++  +KA++  +DL+  T
Sbjct: 644 -----------IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVT 692

Query: 413 YARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + F +    +V+++QR + K++  ++ Y  G   F  +A   G+++   A  +K
Sbjct: 693 AKKIFELEEKEEVSREQRTMAKIINFSIIY--GKTPFG-LAKELGISVKDAAEYIK 745


>gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
 gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
          Length = 844

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           ++  R C++ +  K + + AD + IE RVLA + GE   ++AFE G D++  T +  + V
Sbjct: 602 AEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETASWVYGV 661

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF-QKMA 452
           A  +V+ +QR   KV+   L Y   A    Q+M 
Sbjct: 662 AAEEVSAEQRRFAKVVNFGLLYGMSAHGLAQRMG 695


>gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
 gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
          Length = 932

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +S+P+   I     +   V+      EG   V  D + IE R
Sbjct: 659 GRVHTTYNQTITATGRLSSSNPNLQNIPTRSELGHAVKKAFSVEEGSVFVAIDYSQIELR 718

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++G++  + AF  GED +  T AR F V   +VT   R+  K +   + Y  G +A
Sbjct: 719 LLAHLSGDEHLVGAFNEGEDFHAETAARVFGVPVEEVTPQLRSRAKAVNFGIVY--GQQA 776

Query: 448 F 448
           +
Sbjct: 777 Y 777


>gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S]
 gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S]
          Length = 912

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG + L+ AD + IE R++A ++G+   ++AF TGEDL+    +R+F V   
Sbjct: 671 IRDGFVVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIE 730

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
           +VT + R   K M   L Y  G  AF
Sbjct: 731 EVTPELRRRVKAMSYGLAY--GLSAF 754


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H   +Q IT      +SDP+ LQ I         +R   IA EG  L+ AD + IE 
Sbjct: 640 GRVHTSFNQAITTTGRLSSSDPN-LQNIPIRSAEGREIRKAFIAEEGHTLLAADYSQIEL 698

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A  +G+     AF  GED++  T A    +A   V+ + R   K +   + Y   A 
Sbjct: 699 RLMAHFSGDAALCAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSAF 758

Query: 447 AFQKMASTTGLNLNTF 462
              K  + +     TF
Sbjct: 759 GLAKQLNISRGEAQTF 774


>gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 882

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 35/236 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   LFL+  L     T+T     +   + L+ Q  Q+  N +   + A LK NT V+
Sbjct: 538 KQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYRKLAKLK-NTYVD 596

Query: 297 AM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +      D R+      +G + TGR S      QN+P   ++ E +             
Sbjct: 597 PIPKMVKFDDRIHTCYHQIG-TVTGRLSSSDPNLQNIP--VKTEEGIR------------ 641

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      +R   IA +G KL+  D + +E RVLA ++ ++  +KA++  +DL+  T
Sbjct: 642 -----------IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVT 690

Query: 413 YARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + F +    +V+++QR + K++  ++ Y  G   F  +A   G+++   A  +K
Sbjct: 691 AKKIFELEEKEEVSREQRTMAKIINFSIIY--GKTPFG-LAKELGISVKDAAEYIK 743


>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 870

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 10/131 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q +T      +S+P+   I      S  +R   +  EG  L  AD + IE R+
Sbjct: 658 RVHTSFNQTVTATGRLSSSNPNLQNIPIRSEFSRRIRQAFVPQEGWLLASADYSQIELRI 717

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ E   ++ F +GED++  T    F     +VT ++R + K +   + Y  GA   
Sbjct: 718 LAHLSQEPTLIECFRSGEDVHTLTARLLFE--KQEVTSEERRLAKTINYGVIYGMGA--- 772

Query: 449 QKMASTTGLNL 459
           Q+ A T G++L
Sbjct: 773 QRFARTAGVSL 783


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR    H   +Q IT      +SDP+ LQ I         +R C I   G     AD + 
Sbjct: 642 PRTGHIHTSFNQAITATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RV+A ++ ++  ++AF  G D++  T A+ +     +VT+D+R   K     + Y
Sbjct: 701 IELRVMAHLSSDKNMIEAFMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIY 758


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLV 377
           V P    P   R H E +Q +T      +S P+    P++   S  +R   I   G  LV
Sbjct: 643 VLPTLVRPDTGRVHTEFNQAVTATGRLSSSSPNLQNIPIRTEFSRQIRRAFIPEAGWLLV 702

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA ++ E   L A++ G D++  T    F +    ++  +R +GK++  
Sbjct: 703 AADYSQIELRILAHLSQEPALLAAYQEGADVHRLT--AQFLLEKTDISSSERRLGKMINF 760

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462
            + Y  G + F + A  +      F
Sbjct: 761 GVIYGMGPQRFAREAGVSVAEAKVF 785


>gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 887

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 36/246 (14%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A TL Q+ +    KL +ELE   Y        L   ++L   LF + GL +   T+T   
Sbjct: 508 ASTLIQLQNEFAVKL-KELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 566

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  T
Sbjct: 567 TSVEVLDQLKMQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 623

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +   +++ +        + S+PD        + SC         
Sbjct: 624 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 662

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435
              D + +E RVLA ++G+Q   +AF+TG D++  T  + F++ +P QVT   R   K +
Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAV 719

Query: 436 ELALGY 441
              + Y
Sbjct: 720 NFGIVY 725


>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
 gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
          Length = 928

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA +   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPQDHVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 929

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 13/178 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIA-SEGKKLVVADLA 382
           PR  R H    Q +       +++P+ LQ I         VR   IA ++   L+ AD +
Sbjct: 650 PRTGRVHTTYMQTVAATGRLSSNNPN-LQNIPIRTERGQRVRKAFIARNDDYILLSADYS 708

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ E   +++F  GED++  T A+ FNV    VT++QR+  K +   + Y 
Sbjct: 709 QIELRIIAALSEEHNMIESFLHGEDIHRATAAKVFNVPLEAVTREQRSHAKTVNFGIIY- 767

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
            G  AF  +++ T L+ +    L+ T  A   + +  N+ +       EH   +  +G
Sbjct: 768 -GVSAF-GLSAQTDLSRSQSKELIDTYYA--TYPNLRNYIQKQIHFAQEHGYVETVLG 821


>gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1]
 gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1]
          Length = 850

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q IT      +++P+    P+++ +   +R   +  EG   + AD + IE RV
Sbjct: 576 RIHGTFNQTITATGRISSTEPNLQNIPVRMELGREIRKVFVPQEGCVFIDADYSQIELRV 635

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           LA M+G+Q  + A++  ED++  T ++ F+V   +VT  QR   K +   + Y
Sbjct: 636 LAHMSGDQRLIGAYKQAEDIHAITASQVFHVPLHEVTPLQRRNAKAVNFGIVY 688


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 11/156 (7%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G S+         P    P   R H    Q         +SDP+ LQ I       
Sbjct: 606 LEYRGLSKLKSTYTDKLPRMINPATGRVHTRYSQAAVITGRLASSDPN-LQNIPVRTEAG 664

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             VR   IA +G  L+ AD + IE R++A ++ +     AF  GED++  T A  F VA 
Sbjct: 665 RRVREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQSAFAAGEDIHRATAAEVFGVAL 723

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           A V+ DQR   K +   L Y  G   F  +AS  G+
Sbjct: 724 ADVSTDQRRAAKAINFGLIY--GMGVF-GLASNLGI 756


>gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches]
 gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches]
          Length = 608

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 9/121 (7%)

Query: 349 SITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           SIT  P   L      +R C +A EG ++   D    E RVLA ++ +Q  ++AF    D
Sbjct: 359 SITGIPAQTLPAGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDAD 418

Query: 408 LYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           L++ T   +F      + KD  +R   KV+     Y GGAK    +A  TGL++ T   +
Sbjct: 419 LHLMTARAAFG---EHIQKDDPERKYAKVVNFGRVYGGGAKT---VAEQTGLDMATAQKV 472

Query: 466 V 466
           V
Sbjct: 473 V 473


>gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle]
          Length = 608

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 9/121 (7%)

Query: 349 SITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           SIT  P   L      +R C +A EG ++   D    E RVLA ++ +Q  ++AF    D
Sbjct: 359 SITGIPAQTLPAGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDAD 418

Query: 408 LYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           L++ T   +F      + KD  +R   KV+     Y GGAK    +A  TGL++ T   +
Sbjct: 419 LHLMTARAAFG---EHIQKDDPERKYAKVVNFGRVYGGGAKT---VAEQTGLDMATAQKV 472

Query: 466 V 466
           V
Sbjct: 473 V 473


>gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
 gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
          Length = 859

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L+EA+  DGR+  T    GA+ TGR S      QN+P  + +  +            
Sbjct: 571 IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTDAGRK------------ 617

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R+     EG + L+ AD + IE RV+A ++ +   ++A+ +GEDL+
Sbjct: 618 -------------IRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLH 664

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F+V   +VT + R   +V  L+ G   G  AF
Sbjct: 665 NYVGSRVFDVPVDEVTPELRR--RVKALSYGLVYGLSAF 701


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q +T      +S+P+   I I D     +R   I  +G +   AD + I
Sbjct: 674 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQI 733

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  + AF +G D++  T A+ + V  ++VT D R   K     + Y
Sbjct: 734 ELRIMAHLSQDRNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIY 790


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q +T      +S+P+   I I D     +R   I  +G +   AD + I
Sbjct: 674 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQI 733

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  + AF +G D++  T A+ + V  ++VT D R   K     + Y
Sbjct: 734 ELRIMAHLSQDRNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIY 790


>gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 99/246 (40%), Gaps = 42/246 (17%)

Query: 218 LDQELESLTYGLVSSS------RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267
           ++ +L+ LT  ++  +      R  ++L   LF + G+     T T    T  +VL   +
Sbjct: 520 VNAQLDELTRSIIGYAGEEFNIRSSQQLAVVLFDQLGIKAGSKTSTGLRSTANQVLEKIR 579

Query: 268 KLTPQAIQVFNNRMRAS-RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
              P    V   RM    RS  L+   L + +  DGRL      L ++ TGR S      
Sbjct: 580 DQHPIVDAVLEFRMLEKLRSTYLE--PLPKMVGEDGRLHTHFNQL-STATGRLSSSQPNL 636

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P              H P                +R+C  A+EG  L  AD + IE 
Sbjct: 637 QNIPIRG----------VHGPR---------------MRACFNAAEGNMLAAADYSQIEL 671

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA  + +   + AF   ED++  T A   +   + VT D+R   K +   L Y  G  
Sbjct: 672 RVLAHFSKDPELIDAFRHDEDIHARTAALIHDKDISAVTPDERRGAKTINFGLIYGMGV- 730

Query: 447 AFQKMA 452
             QK+A
Sbjct: 731 --QKLA 734


>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 924

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 27/194 (13%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++L E +N + +   T   L A+ TGR +      QN+P  S    +             
Sbjct: 632 DSLPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGRD------------- 678

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R    + +   L+ AD   IE R+LA +A  +   KAF+  ED++  
Sbjct: 679 ------------IRKAFTSRKNHLLISADYNQIEMRILADLADVKELKKAFKNDEDIHSL 726

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTN 469
           T ++ FNV   +V +DQR   K +   + Y        K  + +      F  A+  K  
Sbjct: 727 TASQIFNVDIKKVDQDQRRKAKAINFGIIYGISQYGLAKQINVSNYEAEEFLDAYFAKFP 786

Query: 470 SAPEEWEDAENFCR 483
                  D   FCR
Sbjct: 787 EIKIYMNDTIKFCR 800


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 27/194 (13%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++L E ++ + +   T   L A+ TGR +      QN+P  S+  +              
Sbjct: 635 DSLPEYIDKNTKRIHTSFLLAATSTGRLASADPNLQNIPIKSKEGK-------------- 680

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +RS  ++ +G  ++ AD + IE RVLA +A  +   KAF+  ED++  
Sbjct: 681 -----------LIRSAFVSEKGSSIISADYSQIEMRVLAHVADVKELKKAFKNNEDIHNI 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT--FAHLVKTN 469
           T ++ F     ++ +D R   K +   + Y   +    K  S +        F++  K  
Sbjct: 730 TASQIFECDIKKINEDMRRKAKAINFGIIYGISSYGLAKQISVSNPEAEQFLFSYFKKFP 789

Query: 470 SAPEEWEDAENFCR 483
              +  ++   FCR
Sbjct: 790 EIRDYMQETLEFCR 803


>gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411]
 gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411]
          Length = 859

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L+EA+  DGR+  T    GA+ TGR S      QN+P  + +  +            
Sbjct: 571 IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTDAGRK------------ 617

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R+     EG + L+ AD + IE RV+A ++ +   ++A+ +GEDL+
Sbjct: 618 -------------IRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLH 664

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +R F+V   +VT + R   +V  L+ G   G  AF
Sbjct: 665 NYVGSRVFDVPVDEVTPELRR--RVKALSYGLVYGLSAF 701


>gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
 gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
          Length = 931

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +S P+   I     +   V+      EG   V  D + IE R
Sbjct: 658 GRVHTTYNQTITATGRLSSSSPNLQNIPTRSELGHAVKRAFSVEEGSVFVAIDYSQIELR 717

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++G++  + AF  GED +  T AR F V   +VT   R+  K +   + Y  G +A
Sbjct: 718 LLAHLSGDEHLVSAFNEGEDFHAETAARVFGVPVDEVTPQLRSRAKAVNFGIVY--GQQA 775

Query: 448 F 448
           +
Sbjct: 776 Y 776


>gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV-VADLAGIEA 386
           + H   +Q+I       + DP+ LQ I         +R   + SE   ++  AD + IE 
Sbjct: 600 KIHTRFNQVIAQTGRLSSIDPN-LQNIPVRLDEGRKIRKAFVPSEPNSVIFAADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA + G++  L+AF  G D++  T  + FNV   +VT D R   K +   + Y
Sbjct: 659 RVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNFGIVY 713


>gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626]
 gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626]
          Length = 903

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q +       +SDP+   I     +   VR+      G   +  D + IE R+
Sbjct: 629 RIHTTFNQTVAATGRLSSSDPNLQNIPTRSELGHRVRTAFTVPSGHVFLACDYSQIELRL 688

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++G++  + AF++G D +  T +R+F V   +VT + R+  K +   + Y  G +A+
Sbjct: 689 LAHLSGDEHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGIVY--GQQAY 746


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
          Length = 888

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 26/151 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L+ ++E +  DGR+R + + +  + TGR S      QN+P   RS E             
Sbjct: 602 LDGILEYIMDDGRVRTSFKQM-ITATGRLSSVDPNLQNIP--IRSEE------------- 645

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +A + K  + AD + IE RVLA ++ +   + +F+   D++ 
Sbjct: 646 ----------GKNIRKVFVADKNKVFIDADYSQIELRVLAHLSKDSVMIDSFKNDLDIHY 695

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  F V   +VT +QR   K +   + Y
Sbjct: 696 KTASEVFGVPINEVTDNQRRSAKAVNFGIVY 726


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 555 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 614

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 615 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383
           P   + H   +Q +T      +++P+   I     +   +R   I S+ + L++ AD + 
Sbjct: 680 PVTGKIHTSFNQAVTATGRLSSTNPNLQNIPVRDELGRRIRKAFIPSDDEHLLLSADYSQ 739

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E R++A ++G++  + AFE GED++  T AR F    A+V  D+R   K     + Y  
Sbjct: 740 VELRLMAHLSGDESLIAAFEHGEDVHAATAARLFGKEVAEVDSDERRKAKTANFGIIY-- 797

Query: 444 GAKAF 448
           G  AF
Sbjct: 798 GISAF 802


>gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 885

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      ++DP+ LQ I         +R   +ASEG  LV AD + I
Sbjct: 608 KTKRIHSRFMQTVTATGRISSTDPN-LQNIPIKTEEGRLIRKAFLASEGGVLVDADYSQI 666

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++ ++  L AF+ G D++  T +  F+V   +V   QR   K +   + Y
Sbjct: 667 ELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDRQRYEAKAVNFGIVY 723


>gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29]
          Length = 478

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 110/269 (40%), Gaps = 51/269 (18%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++LK+ L    G+ LE +++      LS      P  +Q++ N  +A +   + + ++ E
Sbjct: 144 QQLKSKLSAVLGVKLESVSKN----ALSEFAGHHP-VVQMYLNWKKAEKRRQM-ITSIQE 197

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            M  DG ++ +   LGA  TGR +   F P N   P                        
Sbjct: 198 KMRPDGFVKASYMQLGAE-TGRMT--CFNPNNQQIPKDKQ-------------------- 234

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                   R CV A +G  +V AD   +E R+ A +A ++  ++AF+ GEDL+  T    
Sbjct: 235 -------FRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFKDGEDLHTVT---- 283

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW- 475
                A+     R I K     L Y  GAK  +  A+ + +++ T     K  S   +W 
Sbjct: 284 -----AEAIGCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM-TLEEAQKVRS---DWF 334

Query: 476 EDAENFCRW-MQENHPEHAIEDLFIGTAC 503
           ++ E   +W  +EN   +     F G  C
Sbjct: 335 QEFEGIAKWHKKENDKANNPNPRFKGKKC 363


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +R  L + G  +         P    PR    H   +Q +T      +SDP+ LQ I   
Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLSSSDPN-LQNIPVR 674

Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R C I  EG     AD + IE R++A ++ ++  ++AF  G D++  T A+ +
Sbjct: 675 TDDGKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAFREGHDIHRATAAKIW 734

Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441
           +V   +VT  QR   K     + Y
Sbjct: 735 HVDIDKVTDAQRKKAKQANFGIIY 758


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 29/155 (18%)

Query: 289 LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           + ++ L++++ +DGR+  T  Q + A  TGR S      QN+P  + +  E         
Sbjct: 612 VTVDGLLKSVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIPVRTEAGRE--------- 660

Query: 348 TSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                           +R   +   G ++L+  D + IE R++A ++ ++  ++AF TGE
Sbjct: 661 ----------------IRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGE 704

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           DL+    AR+F V   +VT + R   K M   L Y
Sbjct: 705 DLHSFVAARAFGVPIDEVTAELRRRVKAMSYGLAY 739


>gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 29/153 (18%)

Query: 291 LNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++TL+++ + DGR+  T +Q +    TGR S      QN+P                   
Sbjct: 604 IDTLIKSTSDDGRIHTTYVQTVAG--TGRLSSTDPNLQNIP------------------- 642

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
               P+  +I     R   +  EG + L+ AD + IE RV+A  +G++  + AF +G D 
Sbjct: 643 -IRTPEGRRI-----RDAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADF 696

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +  T +  F+V   QVT  QR+  K M   L Y
Sbjct: 697 HSMTASHVFDVPVEQVTPAQRSSVKQMNYGLAY 729


>gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 370

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY-VTTYARSFNVAPA 422
           +R+  +A EG  L+  D + IE RVLA ++ ++  +KA++  +DL+ +T     F     
Sbjct: 130 IRTGFVAKEGHSLISFDYSQIELRVLAELSKDRHLVKAYQDNQDLHDLTARKIFFKTEED 189

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           ++++ +R+I KV+  ++ Y  G   F  ++   G+ +   +  + T    EE+     F 
Sbjct: 190 EISRHERSIAKVINFSILY--GKTPF-GLSKELGITVQEASQYITT--YFEEYPRVRKFL 244

Query: 483 RWMQENHPEHAIEDLFIGT 501
             + E    H   + F GT
Sbjct: 245 DIVTETAKLHGFVETFYGT 263


>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
 gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
          Length = 956

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +T      +SDP+ LQ I         +R   +A +GKK+V  D + I
Sbjct: 679 RTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRSEEGRKIRQAFLAPKGKKIVACDYSQI 737

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++    AFE G D++  T A  +     +V+ + R   K +   L Y  G
Sbjct: 738 ELRIMAHLSGDKGLTDAFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIY--G 795

Query: 445 AKAFQKMASTTGL 457
             AF  +A   GL
Sbjct: 796 MSAF-GLAKQLGL 807


>gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902]
 gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902]
          Length = 998

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 12/132 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I      S  +R   +  EG  L+ AD + IE 
Sbjct: 707 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIEL 765

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+ TG+D++  T AR   +    V+ D+R +GK +   + Y  GA 
Sbjct: 766 RILTHLSGEEVLQEAYSTGDDVHALT-ARLL-LDKDDVSADERRLGKTINFGVIYGMGA- 822

Query: 447 AFQKMASTTGLN 458
             Q+ A  TG++
Sbjct: 823 --QRFARETGVS 832


>gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304]
 gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304]
          Length = 976

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++++N SDGR+  T +   A+ TGR S      QN+P  +    E           
Sbjct: 687 VQTLMDSVNTSDGRIHTTFEQTVAA-TGRLSSTDPNLQNIPNRNVEGRE----------- 734

Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +R+  + S+G   L+ +D + +E R++A ++G++  ++AF +G D 
Sbjct: 735 --------------IRAAFVPSDGYLSLLSSDYSQVELRLMAHLSGDEALIEAFRSGADF 780

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  + V   Q+T DQR+  K M   L Y
Sbjct: 781 HKYVASLVYQVPLDQITPDQRSHIKAMSYGLAY 813


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H   +Q +T      +SDP+ LQ I         +R   IA  G  ++ AD + I
Sbjct: 611 RQGRVHTSYNQAVTATGRLSSSDPN-LQNIPIRTDEGRRIREAFIAPPGCVILAADYSQI 669

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +     AF   ED++  T +  F + P  VT + R   K +   + Y  G
Sbjct: 670 ELRVLAHLSQDPVFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQG 729

Query: 445 AKAFQK 450
           A +  K
Sbjct: 730 AFSLAK 735


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q +T      +S+P+   I I D     +R   I  +G     AD + I
Sbjct: 686 PRTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 745

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  + AF +G D++  T A+ + V   +VT D R   K     + Y
Sbjct: 746 ELRIMAHLSKDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 802


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EGK +V  D + IE R+LA MAG     +AF  G+D++  T +  FNV   +
Sbjct: 695 IREAFVAPEGKTIVSLDYSQIELRILAHMAGIDALKEAFREGQDIHAMTASEMFNVPMEE 754

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 755 MTPEIRRQAKAINFGVIY 772


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 32/216 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLK--LNT 293
           ++L+  LF+E GL      +T       + + L  Q    V  + +R    A LK  ++ 
Sbjct: 554 KQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLGHLLRHRDVAKLKTTVDG 613

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+++++ DGR+  T     A+ TGR S      QN+P   R+ E                
Sbjct: 614 LLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP--IRTEE---------------- 654

Query: 354 PDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+ AD + IE R++A ++ +   + AF +G D +  T
Sbjct: 655 -------GRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSADDVLIDAFNSGRDFHAAT 707

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            +  F V   +VT DQR   K M   L Y  G  AF
Sbjct: 708 ASSVFQVPVEEVTTDQRRKIKAMNYGLAY--GLSAF 741


>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
 gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
          Length = 829

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 28/151 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++ ++  GR+ G     G + TGR S      QNLP                    
Sbjct: 550 VKALLKRIDETGRVHGNFIQTGTA-TGRLSSAEPNLQNLP-------------------- 588

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            SDP     +S  VR  V A EG  LV AD + +E R+LA ++ ++  ++AF  GED++ 
Sbjct: 589 VSDP-----LSLRVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHT 643

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T    F+    Q+T  +R + K +   + Y
Sbjct: 644 ETAKHLFHT--RQITDRERRVAKTVNFGIIY 672


>gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS]
 gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS]
          Length = 920

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 32/170 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
           F   + A R A    + ++ L+ ++ SDGR+  T  Q + A  TGR S      QN+P  
Sbjct: 615 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 672

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
           + +                            +R   +  +G  +++ AD + IE R++A 
Sbjct: 673 TEAGRR-------------------------IRDAFVVGDGYTEVMTADYSQIEMRIMAH 707

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ +   ++AF TGEDL+    +R+F+V   +VT D R   K M   L Y
Sbjct: 708 LSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAY 757


>gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
 gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
          Length = 896

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 136/332 (40%), Gaps = 45/332 (13%)

Query: 140 ECLYDRN-KPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--SSKEQELWY-----LDQT 191
           E LYD++ K   +E      E C   V     + ++L P+   + + EL+Y     L + 
Sbjct: 446 EILYDKHGKRLQQEQDISSSEVCAAAVNAIYVLIQKLRPIIRDNGQDELYYEIELPLVEV 505

Query: 192 IND---RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
           + D   RG+ VDV      ++ +D     L+ E+  +  G   +    ++L   LF + G
Sbjct: 506 LADMELRGFKVDVEGLQAYSKEMDSRLVILENEI-YMQAGETFNINSPKQLGVILFEKLG 564

Query: 249 LHLEDLTET---TCQRVLS--SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           L +   T+T   T   VL   S K    + I  +   M+   +     + L+  +  DG+
Sbjct: 565 LPVGKKTKTGYSTNAEVLEQLSYKHEIVERILEYRQLMKLKSTYA---DGLLSVLEQDGK 621

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +         + TGR S      QN+P       ++ ++   +PT+            D 
Sbjct: 622 IHSNFN-QTVTATGRISSTEPNLQNIPVKLEMGRKIRKVF--IPTN-----------QDY 667

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           V           L+ AD + IE RVLA +  +   ++AF   ED++ TT ++ F + P +
Sbjct: 668 V-----------LLDADYSQIELRVLAHITDDSNMIEAFLKNEDIHTTTASKVFGIPPEE 716

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           V+   R+  K +   + Y  G  +  K    T
Sbjct: 717 VSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVT 748


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 556 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 615

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 616 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 672


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 552 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 611

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 612 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 668


>gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
 gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
          Length = 878

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            + H    Q +T      +SDP+    P+++ +   +R   +   G   V AD + IE R
Sbjct: 603 GKIHSIFHQKVTATGRLSSSDPNLQNIPIRMPLGRAIRKVFVPDSGYVFVSADYSQIELR 662

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA MAG++  + A+  GED++  T ++ F V   +VT   R   K +   + Y  G  A
Sbjct: 663 VLAHMAGDEHLIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNFGIVY--GISA 720

Query: 448 F 448
           F
Sbjct: 721 F 721


>gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
 gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
          Length = 897

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGK-KLVVADLAG 383
           P   + H   +Q +T      +++P+    P+++ +   +R   +  +G  KLV AD + 
Sbjct: 618 PHTGKIHSSFNQTVTVTGRISSTEPNLQNIPIKLEMGRNIRKAFVPCDGNYKLVDADYSQ 677

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA +  ++  + AF   ED++ +T ++ F V   +VT   R+  K +   + Y  
Sbjct: 678 IELRVLAHITDDENMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAVNFGIVYGI 737

Query: 444 GAKAFQK 450
           G  +  K
Sbjct: 738 GDFSLSK 744


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I      S  +R   +  EG  L+ AD + IE 
Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIEL 753

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+ +G+D++  T AR   +   +V+ D+R +GK +   + Y  GA 
Sbjct: 754 RILTHLSGEEVLQEAYRSGDDVHALT-ARLL-LDKNEVSPDERRLGKTINFGVIYGMGA- 810

Query: 447 AFQKMASTTGLN 458
             Q+ A  TG++
Sbjct: 811 --QRFARETGVS 820


>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
 gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
          Length = 905

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 11/133 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEG-KKLVVADLAGIEA 386
           +R H   +Q+I       + DP+    P++ +    +R   IA  G + L+ AD + IE 
Sbjct: 628 TRIHTTYNQMIAATGRLSSVDPNLQNIPIRTLEGQQIRKAFIAGPGYESLMTADYSQIEM 687

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++ +   ++AF +GEDL+ T  A+ F+V    V  + R   K M   L Y  G  
Sbjct: 688 RIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAVEPEHRRRIKAMSYGLAY--GLS 745

Query: 447 AF---QKMASTTG 456
           AF   Q++   TG
Sbjct: 746 AFGLSQQLGIETG 758


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG  L+  D + IE R+LA MAG     +AF  G+D++  T +  F+V  A+
Sbjct: 696 IREAFVAGEGNVLLSLDYSQIELRILAHMAGIDALKQAFAEGQDIHAMTASEMFDVPMAE 755

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 756 MTPDIRRQAKAINFGVIY 773


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 33/173 (19%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   I  +G KLV  D + IE R+LA  + ++  ++AFE   D++  T  + F    A 
Sbjct: 662 IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDLDIHYQTAVKIFGEENA- 720

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL------------------------NL 459
             K++R I K +   L Y  G+K   K+  T G+                        ++
Sbjct: 721 --KEKRGIAKSINFGLLYGMGSK---KLGETLGIPSKEAKQYIDSYFEAFKSVKDYLKSI 775

Query: 460 NTFAHL---VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             FAH+   VKT    +   D  +    M+  +   A+  LF G+A + +K A
Sbjct: 776 EDFAHINGYVKTLLNRKRLFDFNSANAMMKAAYLREAVNTLFQGSAADLIKLA 828


>gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
 gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 908

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 32/170 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
           F   + A R A    + ++ L+ ++ SDGR+  T  Q + A  TGR S      QN+P  
Sbjct: 603 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 660

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
           + +                            +R   +  EG  +L+ AD + IE R++A 
Sbjct: 661 TEAGRR-------------------------IRDAFVVGEGYAELMTADYSQIEMRIMAH 695

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ +   ++AF TGEDL+    +R+F+V   +VT + R   K M   L Y
Sbjct: 696 LSRDAGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGLAY 745


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 555 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 614

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 615 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 10/131 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q IT      +S P+   I      S  +R   I   G  LV AD + IE R+
Sbjct: 476 RIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRI 535

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ E+  ++A+ T +D++  T    F+     +T ++R +GK++   + Y  GA+ F
Sbjct: 536 LAHLSQEKVLIEAYNTNQDVHSLTAKLLFD--RDGITPEERRLGKIINFGVIYGMGAQRF 593

Query: 449 QK---MASTTG 456
            +   +++T G
Sbjct: 594 AREVGVSATAG 604


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
           Polymerase I From Thermus Aquaticus
          Length = 538

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 261 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 320

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 321 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 377


>gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
           polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
           Orientation For The Structure-Specific Nuclease Domain
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 555 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 614

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 615 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  +V AD + IE RVLA ++ +   + AF TG+D++V T    F V  A 
Sbjct: 664 IRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDVHVRTAMEIFGVDQAG 723

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQK 450
           VT + R   K +   + Y  G  A  K
Sbjct: 724 VTAEMRRRSKTINFGVIYGMGESALAK 750


>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
 gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
          Length = 930

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSRDKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M]
 gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
          Length = 899

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 32/210 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNT 293
           ++L+  LF E G+     T+T       + + L  +    F   + A R      + ++ 
Sbjct: 554 KQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDG 613

Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           L+ ++  DGR+  T  Q + A  TGR S      QN+P  + +  +              
Sbjct: 614 LLNSVADDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIRTDAGRQ-------------- 657

Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R   +  +G  +L+ AD + IE R++A ++ ++  ++AF TGEDL+  
Sbjct: 658 -----------IRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSF 706

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             +R+F V   +VT + R   K M   L Y
Sbjct: 707 VASRAFGVPIDEVTGELRRRVKAMSYGLAY 736


>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
 gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
          Length = 923

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P    P   R H    Q         +SDP+ LQ I         +R   +A  G+KL+
Sbjct: 637 LPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN-LQNIPIRTDDGRRIRRAFVAPSGRKLI 695

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             D + IE R++A ++G+   + AFE+G D++    A  F     +VT ++R   K +  
Sbjct: 696 ACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINF 755

Query: 438 ALGYQGGAKAF 448
            L Y  G  AF
Sbjct: 756 GLIY--GMSAF 764


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 906

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 29/155 (18%)

Query: 289 LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           + ++ L+ ++ SDGR+  T  Q + A  TGR S      QN+P  + +            
Sbjct: 616 VTVDGLLASVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIRTEAGRR--------- 664

Query: 348 TSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                           +R   +  +G  +L+ AD + IE R++A ++ ++  ++AF TGE
Sbjct: 665 ----------------IRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGE 708

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           DL+    +R+F V   +VT + R   K M   L Y
Sbjct: 709 DLHSFVASRAFGVPIGEVTAELRRRVKAMSYGLAY 743


>gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 887

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 36/246 (14%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A TL Q+ +    KL ++LE   YG       L   ++L   LF + GL +   T+T   
Sbjct: 508 ASTLIQLQNEFAVKL-KKLEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 566

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  T
Sbjct: 567 TSVEVLDQLKTQSPIVSKILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 623

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +   +++ +        + S+PD        + SC         
Sbjct: 624 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 662

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435
              D + +E RVLA ++G+Q   +AF+TG D++  T  + F++ +P +VT   R   K +
Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAV 719

Query: 436 ELALGY 441
              + Y
Sbjct: 720 NFGIVY 725


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
           Large Fragment Of Dna Polymerase I From Thermus
           Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
           Wi Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
           Pol In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidies
          Length = 540

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 263 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 322

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 323 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 263 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 322

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 323 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
           From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 262 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 321

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 322 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 378


>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
          Length = 908

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 32/170 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
           F   + A R A    + ++ L+ ++ SDGR+  T  Q + A  TGR S      QN+P  
Sbjct: 603 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 660

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
           + +                            +R   +  +G  +L+ AD + IE R++A 
Sbjct: 661 TEAGRR-------------------------IRDAFVVGDGYSELMTADYSQIEMRIMAH 695

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ ++  ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 696 LSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAELRRRVKAMSYGLAY 745


>gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1]
 gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1]
          Length = 869

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 47/235 (20%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T Q +L   + L P    +   RM    S+   +  L E + +DG++  T+     ++T
Sbjct: 551 STSQDILEKIEGLHPIIPLIQKYRMLTKLSSTY-VKGLQEQVFADGKIH-TIYNQALTQT 608

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P   R  E                          +R   I S    L
Sbjct: 609 GRLSSIEPNLQNIP--VRQEE-----------------------GKLIRKAFIPSHDY-L 642

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V  D + IE R+LA +AG Q  ++AF   +D++  T A  F V   +VT + R   K + 
Sbjct: 643 VTFDYSQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRRQAKAVN 702

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             + Y  G   F K++   G++L                ++A+ F R   E +PE
Sbjct: 703 FGIIY--GMGEF-KLSQQIGVSL----------------KEAKEFIRRYFEEYPE 738


>gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
 gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
          Length = 877

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
           +R H + +Q IT      +++P+    P+++ +   +R   I  EG   + AD + IE R
Sbjct: 602 NRIHGKFNQTITATGRISSTEPNLQNIPVRMPLGREIRKVFIPKEGCVFIDADYSQIELR 661

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA M+ ++  + A+   +D++  T +  F+V   +VTK+QR+  K +   + Y  G  +
Sbjct: 662 ILAHMSDDKNLIDAYNHSKDIHAATASLVFHVPLEEVTKEQRSNAKAVNFGIVY--GISS 719

Query: 448 F 448
           F
Sbjct: 720 F 720


>gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
          Length = 952

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 37/251 (14%)

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLT 255
           + + +A   +Q+ D+ R  +DQ  E   +  +     L   ++L+T LF E  L      
Sbjct: 568 IGIDMARMDDQLADLARV-IDQAQEQ-AFAAIGHEVNLGSPKQLQTVLFEELQLPKTKKI 625

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS----DGRLRGTLQFL 311
           ++      +S K L  +    F  ++ A R A  KL  ++E++      DGR+  T    
Sbjct: 626 KSGYTTDAASLKNLLEKTGHEFLVQLMAHREAA-KLRQMLESLKKSVAEDGRIHTTYA-Q 683

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             + TGR S      QN+P   RS E                          VR   +  
Sbjct: 684 NVAATGRISSNNPNLQNIP--IRSEE-----------------------GRRVRGIFVVG 718

Query: 372 EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           EG + L+ AD + IE R++A ++G+Q  ++A++ GEDL+    +  F+V   +VT   R+
Sbjct: 719 EGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSAMRS 778

Query: 431 IGKVMELALGY 441
             K M   L Y
Sbjct: 779 KVKAMSYGLAY 789


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  P   R H   +Q +T      +++P+ LQ I         +R   IA  G ++V
Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K +  
Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736

Query: 438 ALGYQGGAKAF 448
            L Y  G  +F
Sbjct: 737 GLLY--GMSSF 745


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 266 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 325

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 326 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 382


>gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
           polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q  T      +SDP+   I     +   +R   +A  G  LV  D + I
Sbjct: 557 PNTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K +   + Y
Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673


>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
 gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
          Length = 924

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG +L+ AD + IE R++A ++ +   ++AFE G D++  T A  F     +
Sbjct: 685 IRRAFVAPEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEE 744

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT ++R   K +   L Y  G  AF  +A   G++
Sbjct: 745 VTPNERRAAKAINFGLMY--GMSAF-GLARNLGID 776


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  P   R H   +Q +T      +++P+ LQ I         +R   IA  G ++V
Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K +  
Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736

Query: 438 ALGYQGGAKAF 448
            L Y  G  +F
Sbjct: 737 GLLY--GMSSF 745


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 263 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 322

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 323 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  P   R H   +Q +T      +++P+ LQ I         +R   IA  G ++V
Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K +  
Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736

Query: 438 ALGYQGGAKAF 448
            L Y  G  +F
Sbjct: 737 GLLY--GMSSF 745


>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 930

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
 gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
          Length = 930

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           LQ+ G ++         P    P+ SR H    Q +       +++P+ LQ I       
Sbjct: 630 LQYRGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATGRLSSTEPN-LQNIPVRNEEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA +   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +  
Sbjct: 689 RRIRQAFIAPKDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             VT DQR   K +   L Y  G  AF
Sbjct: 749 DSVTNDQRRSAKAINFGLIY--GMSAF 773


>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
 gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
 gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli UMN026]
 gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
          Length = 928

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   I  E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  LV  D + I
Sbjct: 554 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGFLLVALDYSQI 613

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F  G+D++  T +  F V    V    R   K +   + Y
Sbjct: 614 ELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAAKTVNFGVLY 670


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGI 384
           P   R +   +Q IT      +S+P+    P+++   + +R   +   GK  + AD + I
Sbjct: 613 PETGRIYTSFNQTITATGRLSSSNPNMQNIPIRMEEGNRIRRAFVPEAGKVFLAADYSQI 672

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           + RVLA  +G+    +AF  G+D++  T A  F+V+   V  + R + K +   + Y  G
Sbjct: 673 DLRVLAHYSGDDALTRAFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVY--G 730

Query: 445 AKAF 448
             AF
Sbjct: 731 MSAF 734


>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
 gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
          Length = 930

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  P   R H   +Q +T      +++P+ LQ I         +R   IA  G ++V
Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K +  
Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736

Query: 438 ALGYQGGAKAF 448
            L Y  G  +F
Sbjct: 737 GLLY--GMSSF 745


>gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 933

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 28/215 (13%)

Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300
            +R+L++ +K T  A + FN     +++A     LKL  +V              EA+  
Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIAD 624

Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
              L R  L++ G ++         P    P+  R H    Q         +SDP+ LQ 
Sbjct: 625 QHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683

Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +A  G+KL+  D + IE R++A ++G+   + AF +G D++  T 
Sbjct: 684 IPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATA 743

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A  F      V+ D+R   K +   L Y  G  AF
Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776


>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
 gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
          Length = 929

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 27/151 (17%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L + +N+D GR+  +    GA+ TGR +      QN+P   RS E             
Sbjct: 642 DALQDHINADTGRVHTSYSIAGAN-TGRLASTDPNLQNIP--IRSEE------------- 685

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +A  GK LV  D + IE R+LA +AG      AF+ G+D++ 
Sbjct: 686 ----------GRRIREAFVAEPGKVLVALDYSQIELRILAHIAGIDALKDAFKDGQDIHA 735

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  FNV   ++T D R   K +   + Y
Sbjct: 736 ATASEMFNVPLEEMTPDVRRQAKAINFGVIY 766


>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 927

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 649 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 707

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y  
Sbjct: 708 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 765

Query: 444 GAKAF 448
           G  AF
Sbjct: 766 GMSAF 770


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q  T      +S+P+   I      S  +R   +  +  KL+ AD + IE
Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIE 742

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A E+  + AF   +D++  T    F     +++ D+R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGI 800

Query: 446 KAFQKMASTTGLN 458
           K F   A +TG++
Sbjct: 801 KKF---ARSTGVS 810


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 10/131 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+   I      S  +R   +  EG +L+ AD + IE R
Sbjct: 716 GRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQEGWQLLSADYSQIELR 775

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +L  ++GE+   +A+  G+D++  T AR   +   +V+ D+R +GK +   + Y  GA  
Sbjct: 776 ILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LEKDEVSADERRLGKTINFGVIYGMGA-- 831

Query: 448 FQKMASTTGLN 458
            Q+ A  TG++
Sbjct: 832 -QRFARETGVS 841


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASE-GKKLVVADLAG 383
           P+  R H    Q +T      +++P+    P+++ S   +R   +  + G  ++ AD + 
Sbjct: 601 PQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVFVPRQKGNLILTADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA M+ +   L+AF  G+D++  T A  F V   +VT D R+  K +   + Y
Sbjct: 661 IELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVNFGIVY 718


>gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
 gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
          Length = 876

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLA 382
           P   R +   +Q +T      +SDP+ LQ I         VR+     EG   L+ AD +
Sbjct: 597 PETGRVYTNFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFEPGEGYDVLLSADYS 655

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA M+G+   + AF  G+D++  T A  F V    VT +QR   K +   + Y
Sbjct: 656 QIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNFGIVY 714


>gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 854

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 361 SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           SD ++S +I  E G+  V AD + +E RVLA ++GE+     F +G D++  T +  F V
Sbjct: 613 SDRIKSSLIPREKGRCFVAADYSQVELRVLAHISGEKRLADIFRSGRDIHTETASMVFGV 672

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448
             + VTK+ R   K++   L Y  G  AF
Sbjct: 673 DSSMVTKELRRSAKMVTFGLLY--GMSAF 699


>gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
 gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
          Length = 871

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   I  EG + V AD + IE R
Sbjct: 596 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEEGYRFVDADYSQIELR 655

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA  +G++  ++A++   D++  T ++ F++   +VT  QR   K +   + Y
Sbjct: 656 VLAHCSGDEHLIQAYKEQSDIHRITASQVFHIPFDEVTPQQRRNAKAVNFGIVY 709


>gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 694

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 417 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 475

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ +   ++AF +GEDL+ T  ++ F V P  V  + R   K M   L Y  G 
Sbjct: 476 LRVMAHLSEDAGLIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGLAY--GL 533

Query: 446 KAF 448
            AF
Sbjct: 534 SAF 536


>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044]
 gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 930

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7]
          Length = 877

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H + +Q IT      +++P+    P+++ +   +R   +  E    V AD + I
Sbjct: 599 PDDQRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPKEDCIFVNADYSQI 658

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA MAG++  ++A++  +D++  T ++ F+    +VT  QR+  K +   + Y
Sbjct: 659 ELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVFHTPFDEVTPAQRSNAKAVNFGIVY 715


>gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
          Length = 928

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   I  E   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
 gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
          Length = 930

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + 
Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q +T      +S+P+   I I D     +R   I  +G     AD + I
Sbjct: 663 PRTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 722

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  + AF +G D++  T A+ + V   +VT D R   K     + Y
Sbjct: 723 ELRIMAHLSKDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 779


>gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
          Length = 887

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 36/246 (14%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A TL Q+ +    KL +ELE   Y        L   ++L   LF + GL     T+T   
Sbjct: 508 ASTLIQLQNEFAVKL-KELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 566

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A   +   +  L++ + SDGR+    LQ L A  T
Sbjct: 567 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQSDGRVHTRYLQTLTA--T 623

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +R+ EE  QI       + S+PD        + SC         
Sbjct: 624 GRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VPSEPDG------YIFSC--------- 662

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435
              D + +E RVLA ++G+Q   +AF+TG D++  T  + F++ +P +VT   R   K +
Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAV 719

Query: 436 ELALGY 441
              + Y
Sbjct: 720 NFGIVY 725


>gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01]
 gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01]
          Length = 682

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARV 388
           P   R H    QI           P+  Q+  D  +R      EG+ ++ AD + IE R+
Sbjct: 410 PATGRIHPSWQQIGAETGRMACRKPNLQQVPRDPALRRAFRPKEGRVMLKADFSQIELRI 469

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A +A E   L+AF  G+DL+  T +        +V K+ R + K +   L Y  GA+  
Sbjct: 470 AAAIAKEGRMLRAFREGKDLHALTASLVLGKPLEEVGKEDRQLAKALNFGLLYGLGAEGL 529

Query: 449 QKMASTT 455
           ++ A T 
Sbjct: 530 RRYALTA 536


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCVIASEGKKLVVADLA 382
           PR  R H    Q +T      ++ P+ LQ I       S   ++ V   E   L+ AD +
Sbjct: 652 PRTGRIHTTFMQAVTATGRLSSNQPN-LQNIPIRTPRGSQIRKAFVPRDENYTLLSADYS 710

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ E   ++AF  G+D++ +T A+ F V    VTK+QR+  K +   + Y 
Sbjct: 711 QIELRIIAALSEETHMIEAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYG 770

Query: 443 GGAKAFQKMASTT 455
             A    +  S +
Sbjct: 771 VSAIGLSQQTSLS 783


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T      +SDP+   I     +   +R   IA EG  LV  D + I
Sbjct: 277 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 336

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 337 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRTAKTINYGVLY 393


>gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
 gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
          Length = 861

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 31/170 (18%)

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++ +GR+  T    G + TGR S      QN+P  +R++E                    
Sbjct: 584 LSINGRIHTTYNQTGTA-TGRLSSSNPNLQNIP--TRTYE-------------------- 620

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R   IAS+G KLV  D + IE RVLA ++ ++  + A++   DL+  T  + F
Sbjct: 621 ---GTKIREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARKIF 677

Query: 418 NVA-PAQVTKDQRAIGKVMELALGYQ----GGAKAFQKMASTTGLNLNTF 462
            +    +V+K QR I KV+  ++ Y     G +K  +   S   L +NT+
Sbjct: 678 MLKDDEKVSKTQRNIAKVINFSVLYGKTPFGLSKELKITVSDAKLYINTY 727


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P Q  P   R H   +Q +T      +++P+ LQ I         +R   IA  G ++V
Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K +  
Sbjct: 677 AADYSQVELRIIAHVSKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736

Query: 438 ALGYQGGAKAF 448
            L Y  G  +F
Sbjct: 737 GLLY--GMSSF 745


>gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 931

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           P   + H   +Q +T      +S+P+   I I D     +R   IA E      AD + I
Sbjct: 653 PLDDKLHTSYNQTVTATGRLSSSNPNLQNIPIRDAQGKEIRKAFIADEACIFFSADYSQI 712

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ +   + AF +GED++  T A+ + +  ++VT D R   K     + Y
Sbjct: 713 ELRIMAHLSQDPTMIDAFNSGEDIHAATAAKIYKIPISEVTGDMRRKAKTANFGIIY 769


>gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505]
 gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505]
          Length = 946

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 31/159 (19%)

Query: 288 VLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +KL   VE    A+ +DGR+  T Q   A+ TGR S      QN+P     HEE  +I 
Sbjct: 651 AIKLRQTVEGLRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIPA---RHEEGMRI- 705

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF 402
                                R      EG + L+ AD + IE R++A ++ +Q  ++AF
Sbjct: 706 ---------------------REAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAF 744

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +GEDL+    A    +    VT  QR+  K M   L Y
Sbjct: 745 RSGEDLHRYVAALVHGIEVEDVTAQQRSHVKAMSYGLAY 783


>gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
 gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
          Length = 887

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 36/246 (14%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A TL Q+ +    KL +ELE   Y        L   ++L   LF + GL     T+T   
Sbjct: 508 ASTLIQLQNEFAVKL-KELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 566

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A   +   +  L++ + SDGR+    LQ L A  T
Sbjct: 567 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQSDGRVHTRYLQTLTA--T 623

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +R+ EE  QI       + S+PD        + SC         
Sbjct: 624 GRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VPSEPDG------YIFSC--------- 662

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435
              D + +E RVLA ++G+Q   +AF+TG D++  T  + F++ +P +VT   R   K +
Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAV 719

Query: 436 ELALGY 441
              + Y
Sbjct: 720 NFGIVY 725


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 9/130 (6%)

Query: 326 PQNLPRPS-RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV- 378
           PQ + R + R H   +Q +T      +++P+   I     +   +R   I S+   L++ 
Sbjct: 674 PQLVNRSTGRIHTSFNQAVTATGRLSSTNPNLQNIPVRDDMGRRIRKAFIPSDDDHLLLS 733

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E R++A ++G++  + AFE GED++  T A+ FN    +VT ++R   K     
Sbjct: 734 ADYSQVELRLMAHLSGDESLIAAFEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFG 793

Query: 439 LGYQGGAKAF 448
           + Y  G  AF
Sbjct: 794 IIY--GISAF 801


>gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 906

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H    QI+       ++DP+ LQ +         +R   +  EG + L+ AD + IE
Sbjct: 629 GRVHTSFSQIVAATGRLSSTDPN-LQNVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 687

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  ++AF +GEDL+ T  ++ F V   +V  + R   K M   L Y  G 
Sbjct: 688 LRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERGEVDPEMRRKIKAMSYGLAY--GL 745

Query: 446 KAF 448
            AF
Sbjct: 746 SAF 748


>gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a]
 gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a]
          Length = 884

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 11/132 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
            R H   +Q+I       ++DP+ LQ I           R+ V+    + L+ AD + IE
Sbjct: 607 GRIHTTFNQMIAATGRLSSTDPN-LQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIE 665

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  ++AF +GEDL+    A +F +  ++V  + R   K M   L Y  G 
Sbjct: 666 MRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAMSYGLAY--GL 723

Query: 446 KAFQKMASTTGL 457
            AF  +AS  G+
Sbjct: 724 SAF-GLASQLGI 734


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q  T      +S+P+   I      S  +R   +  +  KL+ AD + IE
Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIE 742

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A E+  + AF   +D++  T    F     +++ D+R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGI 800

Query: 446 KAFQKMASTTGLN 458
           K F   A +TG++
Sbjct: 801 KKF---ARSTGVS 810


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 7/173 (4%)

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ +++ G +   +++  +S+         P    P+  R H + +Q  T      +S+P
Sbjct: 654 LQEVDNTGFVDAIIEYRTSSKLKSTYVDALPALVHPQSQRLHTDFNQTATSTGRLSSSNP 713

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I      S  +R   +   G  +V AD + IE R+LA ++ E   ++A++  ED++
Sbjct: 714 NLQNIPIRTAFSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPVLVQAYKQNEDIH 773

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             T    F     +VT ++R   K +   + Y  G+  F +       N N F
Sbjct: 774 TVTAKLVFE--KDEVTSEERRFAKTINFGVIYGMGSLKFARSTGVDKANANEF 824


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 365  RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
            R C +A +G K V+AD + IE R+ A +A +   ++A++   DL+  T +   N     V
Sbjct: 1553 RECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQKVDLHSLTASILKNKNINDV 1612

Query: 425  TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
             K++R + K +   L + G +    +M + TG NL
Sbjct: 1613 NKEERQLAKAVNFGLIF-GMSINGLRMYAETGYNL 1646


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 10/131 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q IT      +S P+   I      S  +R   I   G  LV AD + IE R+
Sbjct: 685 RIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRI 744

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ E+  ++A+ T +D++  T    F+     +T ++R +GK++   + Y  GA+ F
Sbjct: 745 LAHLSQEKVLIEAYNTNQDVHSLTAKLLFD--RDGITPEERRLGKIINFGVIYGMGAQRF 802

Query: 449 QK---MASTTG 456
            +   +++T G
Sbjct: 803 AREVGVSATAG 813


>gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
 gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
          Length = 932

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
            R H   +Q+I       ++DP+ LQ I           R+ V+ +  + L+ AD + IE
Sbjct: 655 GRVHTTFNQMIAATGRLSSADPN-LQNIPVRTAEGRQIRRAFVVGAGYESLLTADYSQIE 713

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  + AF +GEDL+    A++F +   +V  + R   K M   L Y  G 
Sbjct: 714 MRIMAHLSGDKGLIGAFASGEDLHTFVAAQAFGIPVDEVDPELRRRIKAMSYGLAY--GL 771

Query: 446 KAF 448
            AF
Sbjct: 772 SAF 774


>gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470]
 gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470]
          Length = 858

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLA 382
           P   R H   +Q +T      +SDP+ LQ I         +RS  +   G    + +D +
Sbjct: 579 PETGRIHTSFNQTVTATGRLSSSDPN-LQNIPVRTAEGRQIRSLFVPGPGYDCFISSDYS 637

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +E RVLA M+G++  ++AF   ED++  T A    +   +VT +QR+  K +   + Y
Sbjct: 638 QVELRVLAHMSGDESLIRAFRNKEDIHRRTAAEVLGIPFEEVTSEQRSHAKAVNFGIIY 696


>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 887

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 27/152 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L+ ++  DGR+  T +   AS TGR S      QN+P  + + ++            
Sbjct: 601 LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTDAGKK------------ 647

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A++ GEDL+
Sbjct: 648 -------------IRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLH 694

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
               ++ F+V   +VT + R   K M   L Y
Sbjct: 695 NYVGSKVFDVGIDEVTPELRRRVKAMSYGLAY 726


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEAR 387
           R H   +Q IT      +++P+   I     I   +R   +A S    L+  D + IE R
Sbjct: 589 RIHSNFNQTITATGRISSTEPNLQNIPVKTDIGRKIRGVFVAESPEHVLLSGDYSQIELR 648

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA ++G++  ++AF  GED++  T +  F V P QVT   R   K +   + Y
Sbjct: 649 VLAHLSGDEGLIEAFIKGEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNFGIIY 702


>gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
 gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
          Length = 893

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 29/156 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++++  DGR+  T Q   A+ TGR S      QN+P  + +                  
Sbjct: 608 LLKSVADDGRVHTTFQQTVAA-TGRLSSTDPNLQNIPIRTETGRR--------------- 651

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG   L+ AD + IE R++A ++ +   + AF+ GEDL+   
Sbjct: 652 ----------IRQGFVVGEGLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGEDLHNFV 701

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            AR F V+  +VT   R+  K M   L Y  G  AF
Sbjct: 702 GARVFGVSIDEVTPQMRSKVKAMSYGLAY--GLSAF 735


>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
 gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
          Length = 924

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG +L+ AD + IE R++A ++ +   ++AFE G D++  T A  F     +
Sbjct: 685 IRRAFVAPEGCQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEE 744

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT ++R   K +   L Y  G  AF  +A   G++
Sbjct: 745 VTPNERRAAKAINFGLMY--GMSAF-GLARNLGID 776


>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 887

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 27/152 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L+ ++  DGR+  T +   AS TGR S      QN+P  + + ++            
Sbjct: 601 LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTDAGKK------------ 647

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A++ GEDL+
Sbjct: 648 -------------IRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLH 694

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
               ++ F+V   +VT + R   K M   L Y
Sbjct: 695 NYVGSKVFDVGIDEVTPELRRRVKAMSYGLAY 726


>gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
          Length = 908

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 37/197 (18%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQFLG 312
           +T + VL   +KL    +++ +  +   + A LK NT V+A+    +S  RL  T   +G
Sbjct: 587 STDEEVL---EKLKSDGVEIASYILEYRKYAKLK-NTYVDALPKLVDSKDRLHTTFNQIG 642

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P   ++ E +                        +R   IA  
Sbjct: 643 TT-TGRLSSSNPNLQNIP--VKTDEGMK-----------------------IRQGFIADS 676

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAI 431
           G  L+  D + IE RVLA ++ ++  + A++  EDL+  T  + F +    +V+++QR I
Sbjct: 677 GNVLMGIDYSQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIFELGEGEEVSREQRII 736

Query: 432 GKVMELALGYQGGAKAF 448
            K +  ++ Y  G  AF
Sbjct: 737 AKTINFSIIY--GKTAF 751


>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
          Length = 930

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           LQ+ G ++         P    P+  R H    Q +       ++DP+ LQ I       
Sbjct: 630 LQYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAATGRLSSTDPN-LQNIPVRNEEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA +   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +  
Sbjct: 689 RRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGQDIHRATAAEVFGLPL 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
             VT +QR   K +   L Y  G  AF
Sbjct: 749 ESVTNEQRRSAKAINFGLIY--GMSAF 773


>gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
 gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
          Length = 857

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 26/160 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++L++ + +DGR+R   +    +RTGR S      QN+P                    
Sbjct: 570 VDSLLKEVEADGRVRSVFK-QTETRTGRISSTEPNMQNIPVRKE---------------- 612

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                    I   +R   +A +G   + AD + IE RVLA + G++   K F  G D++ 
Sbjct: 613 ---------IGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIHT 663

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            T ++ F +    V  + R+  K +   + Y  GA +  K
Sbjct: 664 MTASQVFGIPADAVLPEMRSAAKAVNFGIIYGIGAFSLSK 703


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 36/181 (19%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L+++++ DGR+  T     A+ TGR S      QN+P   R+ E             
Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP--IRTEE------------- 654

Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +  EG + L+ AD + IE R++A ++ +   ++AF +G D +
Sbjct: 655 ----------GRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFH 704

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---QKMASTT----GLNLNTF 462
             T +  F V    VT DQR   K M   L Y  G  AF   Q++  +     GL  N F
Sbjct: 705 AATASSVFTVEVGDVTADQRRKIKAMNYGLAY--GLSAFGLSQQLGISAEEARGLMENYF 762

Query: 463 A 463
           A
Sbjct: 763 A 763


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 11/125 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG+ L+  D + IE R+LA  + +   L+AF+ G D+++ T  + F    A 
Sbjct: 653 IRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQKGRDIHMETAIKLFGKEHA- 711

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP-----EEWEDA 478
             K++R I K +   L Y  G++   K+A T G++      ++++  A         E  
Sbjct: 712 --KEKRNIAKSINFGLIYGMGSR---KLAETLGISTKEAKAIIESYFASFPTVKSYLESV 766

Query: 479 ENFCR 483
           ENF +
Sbjct: 767 ENFAK 771


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q  T      +S+P+   I      S  +R   +  +  KL+ AD + IE
Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIE 742

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A E+  + AF   +D++  T    F     +++ D+R +GK +   + Y  G 
Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGI 800

Query: 446 KAFQKMASTTGLN 458
           K F   A +TG++
Sbjct: 801 KKF---ARSTGVS 810


>gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)]
          Length = 1018

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387
           R H    Q +T      ++DP+ LQ I         +R   IA EG+ L+ AD + IE R
Sbjct: 735 RVHTSYHQALTSTGRLSSTDPN-LQNIPIRTKTGRLIRQAFIAPEGRVLLAADYSQIELR 793

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A  +G+    KAF  G D++  T A     +  +VT  +R   K +   L Y  G  A
Sbjct: 794 LMAHFSGDANLTKAFNEGLDIHTATAAEVLGKSVDEVTPTERRNAKAINFGLLY--GMSA 851

Query: 448 F 448
           F
Sbjct: 852 F 852


>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
 gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
          Length = 924

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG +L+ AD + IE R++A ++ +   + AFE G D++  T A  F     +
Sbjct: 685 IRRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLVGAFEQGADVHRATAAEVFGRTLEE 744

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT ++R   K +   L Y  G  AF  +A   G++
Sbjct: 745 VTPNERRAAKAINFGLMY--GMSAF-GLARNLGID 776


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +RS   A  G  L+ AD + IE  VLA ++G++    AF  G D++ +T A  + ++P Q
Sbjct: 690 IRSAFTAVPGTVLISADYSQIELVVLAHLSGDKNLCSAFINGIDVHKSTAALIYGISPEQ 749

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449
           V  +QR   K +   + Y  G  AF+
Sbjct: 750 VKPEQRRFAKTVNFGVMY--GMSAFR 773


>gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
 gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
          Length = 911

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIAS-EGKKLVVADLA 382
           P  S+ H    Q +T      + DP+ +Q I D       +R   + S EG ++  +D +
Sbjct: 631 PDDSKIHTRYLQTLTQTGRLSSVDPN-MQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYS 689

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
            IE RVLA + G++   KAFE+GED++  T    F ++  Q +T DQR   K +   + Y
Sbjct: 690 QIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 749


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 36/181 (19%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L+++++ DGR+  T     A+ TGR S      QN+P   R+ E             
Sbjct: 621 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP--IRTEE------------- 664

Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +  EG + L+ AD + IE R++A ++ +   ++AF +G D +
Sbjct: 665 ----------GRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFH 714

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---QKMASTT----GLNLNTF 462
             T +  F V    VT DQR   K M   L Y  G  AF   Q++  +     GL  N F
Sbjct: 715 AATASSVFTVEVGDVTADQRRKIKAMNYGLAY--GLSAFGLSQQLGISAEEARGLMENYF 772

Query: 463 A 463
           A
Sbjct: 773 A 773


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 36/223 (16%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD--PLQIISDC---VRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q +       +SDP+   + I  D    +R   +A  GK LV AD + I
Sbjct: 615 PETKRVHTSFNQTVAATGRLSSSDPNLQNIPIRGDAGKNIRKGFMAGSGKILVAADYSQI 674

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY--- 441
           E RV A  + +   + AF+  +D++  T          +VT + R I K +   + Y   
Sbjct: 675 ELRVFAHYSQDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFGIIYGMG 734

Query: 442 -------------------------QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                                      G K F++ A  T L       L        +  
Sbjct: 735 PQKLSEELSISKEAAQDYINAYYDRYKGVKRFKEKAIETALEKGYVTTLFNRRRYLPDIS 794

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              N  R   E     A+     GTA + +KKA  + H+R++E
Sbjct: 795 HNNNRIRSEAE---RMAVNTPIQGTAADLIKKAMIEIHNRLTE 834


>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
 gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
          Length = 904

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC 363
           L++ G S+         P    P   R H    Q         +SDP+    P++ ++  
Sbjct: 604 LEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTLAGR 663

Query: 364 -VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            VR   +A     LV AD + IE R++A ++ +    +AF  GED++  T A  F V   
Sbjct: 664 RVREAFVADGDGLLVSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATAAEVFGVPLP 723

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +VT +QR   K +   L Y  G   F  +AS  G+ 
Sbjct: 724 EVTSEQRRAAKAINFGLIY--GMGVF-GLASNLGIT 756


>gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 912

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 34/213 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT--- 293
           ++L+T LF E G+      +T       +   LT +    F  +++A R A     T   
Sbjct: 563 KQLQTVLFDELGMPKTKKIKTGFSTDAEALADLTTKHPHPFLLQLQAYRDATKLRQTVEG 622

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++++ SD R+  T      + TGR S      QN+P   RS E                
Sbjct: 623 LIKSIGSDTRVHTTYA-QNVAATGRLSSNNPNLQNIP--IRSEE---------------- 663

Query: 354 PDPLQIISDCVRSCVIASEG-----KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                     +R   +  +      + L+ AD + IE R++A ++G++  ++AF+ GEDL
Sbjct: 664 -------GRRIRGAFVVGQKSTKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDL 716

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  FNV P +VT   R+  K M   L Y
Sbjct: 717 HRFVGSHIFNVEPQEVTSAMRSKVKAMSYGLVY 749


>gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C]
 gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C]
          Length = 483

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 29/180 (16%)

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           T   + V   R R      + +  LV+++ +DGR+  +     A+ TGR S      QN+
Sbjct: 174 TDHELPVIMLRHREQAKLRVTVEGLVKSIAADGRVHTSFSQTTAA-TGRLSSTDPNLQNV 232

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388
           P   R+ E                          +R   +  EG + L+ AD + IE RV
Sbjct: 233 P--VRTDE-----------------------GRAIRRGFVVGEGYESLMTADYSQIELRV 267

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  ++AF +GEDL+ T  ++ F V  +QV  + R   K M   L Y  G  AF
Sbjct: 268 MAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERSQVDAEMRRKIKAMSYGLAY--GLSAF 325


>gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
 gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
          Length = 887

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 35/230 (15%)

Query: 220 QELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA 273
           ++LE   YG       L   ++L   LF + GL +   T+T   T   VL   K  +P  
Sbjct: 523 KKLEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIV 582

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRP 332
            ++ + R  A   +   +  L++ +  DGR+    LQ L A  TGR S      QN+P  
Sbjct: 583 SKILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--TGRLSSVDPNLQNIPTR 639

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +   +++ +        + S+PD        + SC            D + +E RVLA +
Sbjct: 640 TEEGKQIRKAF------VPSEPDG------YIFSC------------DYSQVELRVLAHV 675

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
           +G+Q   +AF+TG D++  T  + F++ +P +VT   R   K +   + Y
Sbjct: 676 SGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVY 725


>gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
 gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
          Length = 798

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 38/214 (17%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP---------QAIQVFNNRMRASRSA 287
           ++L+ +LF E G+     T+T       S + + P         + I V+    +   + 
Sbjct: 452 KQLQVFLFEELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLSTY 511

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
            L L   V A   DGR+  + +  G + TGR S      QN+P   +   +L        
Sbjct: 512 ALPLKDYVLA---DGRIHSSFRQTGTA-TGRLSSVNPNMQNIPMKGKWGVKL-------- 559

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                            R   I  EG   V  D + IE R+LA + G++   +A+   ED
Sbjct: 560 -----------------REAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNED 602

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++  T +  F VAP +V    R + K +   + Y
Sbjct: 603 IHTKTASGIFGVAPEKVDSGMRRLAKAVNFGILY 636


>gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
 gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
          Length = 911

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIAS-EGKKLVVADLA 382
           P  S+ H    Q +T      + DP+ +Q I D       +R   + S EG ++  +D +
Sbjct: 631 PDDSKIHTRYLQTLTQTGRLSSVDPN-MQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYS 689

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
            IE RVLA + G++   KAFE+GED++  T    F ++  Q +T DQR   K +   + Y
Sbjct: 690 QIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 749


>gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1]
 gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1]
          Length = 903

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIAS-EGKKLVVADLA 382
           P  S+ H    Q +T      + DP+ +Q I D       +R   + S EG ++  +D +
Sbjct: 623 PDDSKIHTRYLQTLTQTGRLSSVDPN-MQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYS 681

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
            IE RVLA + G++   KAFE+GED++  T    F ++  Q +T DQR   K +   + Y
Sbjct: 682 QIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 741


>gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
          Length = 925

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 30/209 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR---SAVLKLNT 293
           ++L+  LF +  L     T+T       + ++L  +    F + + A R     V  L+ 
Sbjct: 580 KQLQEVLFDKLELSKTKKTKTGYSTAAKAIERLAEKHPHPFLDHLLAHREYQKRVSTLDG 639

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++A+ SDGR+  T     A+ TGR S      QN+P  +   EE  QI           
Sbjct: 640 LIKAIASDGRIHTTFN-QTATATGRLSSTDPNLQNIPVRT---EEGRQI----------- 684

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      R+  +  EG + L+ AD + IE RV+A  + ++  ++A+ +GEDL+   
Sbjct: 685 -----------RAAFVPGEGYEALLTADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHNFV 733

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            ++ F+V   +VT + R   K +   L Y
Sbjct: 734 GSQVFDVPVNEVTPELRRRVKALSYGLVY 762


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A+ G +LV  D + IE R+LA +AG +   +AF  G D++  T +  FNV  A+
Sbjct: 694 IREAFVAAPGNRLVSLDYSQIELRILAHVAGIETLKQAFRDGHDIHAMTASEMFNVPLAE 753

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 754 MTPEIRRQAKAINFGVIY 771


>gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6]
 gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6]
          Length = 885

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q IT      +++P+    P +I +   +R C +  +G   V AD + IE R
Sbjct: 610 GRIHTTFKQTITATGRISSTEPNLQNIPTRIELGRQIRKCFVPQDGFVFVDADYSQIELR 669

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA ++G++  ++A+   ED++  T ++ F+V  ++VT   R   K +   + Y
Sbjct: 670 VLASLSGDEKLIEAYRDAEDIHAITASQVFHVPLSEVTPLMRRNAKAVNFGIVY 723


>gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612]
          Length = 421

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q  T      +S+P+   I      S  +R   +  +  KL+ AD + IE
Sbjct: 128 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIE 187

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A E+  + AF   +D++  T    F      ++ D+R +GK +   + Y  G 
Sbjct: 188 LRILAHLADEEILINAFHKNDDIHSLTAKLIFE--KEVISSDERRVGKTINFGVIYGMGI 245

Query: 446 KAFQKMASTTGLNL 459
           K F   A +TG+++
Sbjct: 246 KKF---ARSTGVSI 256


>gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 932

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++G++  L AF +GEDL+ +  A  + V P +VT  QR+  K  
Sbjct: 704 LMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKAT 763

Query: 436 ELALGY 441
              L Y
Sbjct: 764 SYGLAY 769


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVI-ASEGKKLVVADLA 382
           PR  R H +  Q++T      + DP+ LQ I         +R+  + ASE   ++ AD +
Sbjct: 667 PRDGRIHTQFHQMLTATGRLASQDPN-LQNIPVRTEQGRLIRTAFVPASEKYTMLSADYS 725

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G+     AF  G D++  T AR + +   QV    R   K +   + Y 
Sbjct: 726 QIELRIMAALSGDPAMCGAFREGRDIHTETAARVYGIPRDQVDAVMRRAAKTVNFGIIY- 784

Query: 443 GGAKAF 448
            G  AF
Sbjct: 785 -GISAF 789


>gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 908

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 32/216 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L+  LF E GL     T+T   T    L+     T   + V   R R      + +  
Sbjct: 563 KQLQEVLFGELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTVEG 622

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DGR+  +     A+ TGR S      QN+P   R+ E                
Sbjct: 623 LIKTIAADGRIHTSFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 663

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T 
Sbjct: 664 -------GRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTA 716

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A+ F V  + V  + R   K M   L Y  G  AF
Sbjct: 717 AAQVFGVEQSAVDAEMRRKIKAMSYGLAY--GLSAF 750


>gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium]
          Length = 283

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 46/81 (56%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++ V   E   L+ AD + IE R++A ++G+    +AF+ G+D++  T A+ +N+  A V
Sbjct: 43  KAFVPRDENHLLISADYSQIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNIEEADV 102

Query: 425 TKDQRAIGKVMELALGYQGGA 445
           TK+ R   K +   + Y  GA
Sbjct: 103 TKEMRYKAKSVNFGIIYGQGA 123


>gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 893

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 27/149 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+ A+ +DGR+  T Q   A+ TGR S      QN+P  +R+ E +              
Sbjct: 608 LISAVGADGRIHTTFQQTVAA-TGRLSSTEPNLQNIP--ARTAEGMR------------- 651

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +   G   L+ AD + IE R++A M+ ++  ++AF++GEDL+ T 
Sbjct: 652 ----------IRGAFVPGTGFDYLLTADYSQIEMRLMAHMSKDEALIEAFKSGEDLHRTM 701

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            A  F V   +VT   R+  K     L Y
Sbjct: 702 AAMVFAVPVEEVTPALRSQIKATSYGLAY 730


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 131/312 (41%), Gaps = 28/312 (8%)

Query: 145 RNKPNHREA-WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
           + + N R+    L  EY   D  +T ++ ++ EPL  +   L    +        V+  L
Sbjct: 482 KKQGNMRDVEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQE--------VEFPL 533

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
            + L++I   E+  +  +++ L+    +    +  L+  ++ + G+     +      VL
Sbjct: 534 VYVLSEI---EKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVL 590

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               +L P+A +    + +     +L L    + +      R  LQ L ++      G +
Sbjct: 591 FDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDILDFR-QLQKLKSTYVDALPGLI 649

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376
            P   L      H   +Q +       +++P+ LQ I        +  ++ +  SE   +
Sbjct: 650 NPTTGL-----IHTSYNQAVAATGRLSSTNPN-LQNIPIRTERGREVRKAFIPRSENNVI 703

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++ +   L+AF+ G D++  T A+ + +   +V+ DQR   K + 
Sbjct: 704 LSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVN 763

Query: 437 LALGYQGGAKAF 448
             + Y  G  AF
Sbjct: 764 FGIIY--GQSAF 773


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 942

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISD----CVRSCVIASEGKKLVVADLAGI 384
           P+  R H   +Q I       +++P+   I I D     +R   IA +G +++  D + I
Sbjct: 664 PKTKRIHTSYNQTIAATGRLSSTNPNLQNIPIKDEEGRLLRKGFIAKKGYEILSLDYSQI 723

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  + +   + A+ +G D++  T A  F V   QVT D R   KV+  ++ Y  G
Sbjct: 724 ELRIMAHFSNDPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIY--G 781

Query: 445 AKAF 448
             +F
Sbjct: 782 VTSF 785


>gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 885

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 336 HEELDQIITHLPTSITSDPD--PLQIISD---CVRSCVIASEGKKLVVADLAGIEARVLA 390
           H   +Q IT      +++P+   + I +D    +R   ++SEG  LV AD + IE RVLA
Sbjct: 613 HSHFNQTITSTGRISSTNPNLQNIPIKTDEGKLIRKAFLSSEGCVLVDADYSQIELRVLA 672

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            ++ ++  + AFE  +D++  T A+ F V    VT   R+  K +   + Y
Sbjct: 673 DISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFGIVY 723


>gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
 gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
          Length = 932

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++G++  L AF +GEDL+ +  A  + V P +VT  QR+  K  
Sbjct: 704 LMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKAT 763

Query: 436 ELALGY 441
              L Y
Sbjct: 764 SYGLAY 769


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+    H   +Q +T      +S+P+ LQ I         +R   I   G     AD + 
Sbjct: 643 PQTGHLHTTFNQAVTSTGRLSSSNPN-LQNIPVRGEDGREIRKAFIPEAGDVFFSADYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   ++AF+ GED++  T AR F    ++V++D+R   K     + Y  
Sbjct: 702 IELRIMAHLSKDPHLIEAFKKGEDIHAATAARIFKKDLSEVSRDERRKAKTANFGIIY-- 759

Query: 444 GAKAF 448
           G  AF
Sbjct: 760 GISAF 764


>gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
 gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
          Length = 885

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R C I    + L V AD + IE R+LA ++G+   + AF +G D +  T AR F V   
Sbjct: 645 IRECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFHSATAARVFGVPVE 704

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
           +VT + R+  K +   + Y  G +AF
Sbjct: 705 EVTPELRSRAKAVNFGIVY--GQQAF 728


>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
 gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
          Length = 934

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 633 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNKEG 691

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++ ++  L+AF  G+D++  T A    V+ 
Sbjct: 692 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAFSAGKDIHAATAAEVKGVSI 751

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            +VT + R   K +   L Y  G  AF
Sbjct: 752 EEVTSEDRRRAKAINFGLIY--GMSAF 776


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 99/429 (23%), Positives = 167/429 (38%), Gaps = 50/429 (11%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           IV  N  F+ ++L   + ++  +  +  T+++A      S +     A K     M+  K
Sbjct: 391 IVGQNLKFDLSLLYNQYGME-EVLPFADTMIMAWLTDPGSRVGLDSLAQKFFKYDMKPFK 449

Query: 128 ELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-SKEQE 184
           E++    KGE  +H  + D       +AW  F  Y  G +    E+      L  +K+ E
Sbjct: 450 EMVK---KGENFSHVNIADATFYAAEDAWMTFLLY--GAIKKKMELSSLTHLLKEAKDVE 504

Query: 185 LWYLDQTINDR--GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             +++  I     G  VD     TL + +  +  +L  E+  L+ G   + R  ++L   
Sbjct: 505 YPFINVLIRMERLGIKVDQVKLETLKKTLSEDLHRLTSEIHELS-GSEFNIRSTQQLGVV 563

Query: 243 LFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           LF   GL     T+T   T + VL S K   P   ++   R    +     +  L++   
Sbjct: 564 LFQHLGLKGGKKTKTGYSTNEAVLQSLKHEHPVIGKILEYR-EYHKMLSTYVEPLLKLAK 622

Query: 300 SDGRLRGTLQFL-GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            D + R    F+   + TGR S      QN+P  S                         
Sbjct: 623 KDEKSRIYTSFIQTGTATGRLSSKDPNLQNIPVRS------------------------- 657

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
            +   VR   +A EG KLV  D + IE R+LA  + +   ++AF  G D+++ T  + F 
Sbjct: 658 TLGRSVREAFVAKEGYKLVSIDYSQIELRLLAHFSKDAALMEAFNKGTDIHMATAVKLFG 717

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
              A   K +R   K +   L Y  G K   K++   G+       ++    A   +   
Sbjct: 718 EEEA---KAKRNFAKSVNFGLLYGMGPK---KLSDELGITSAEAKEIIANYFAS--FPTV 769

Query: 479 ENFCRWMQE 487
           +NF   +QE
Sbjct: 770 KNFLEGIQE 778


>gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
 gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
          Length = 870

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 41/309 (13%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQEL-ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
           G+ VD A      + +  +   ++QE+ +++ Y    +S   ++L   LF++ GL     
Sbjct: 487 GFLVDAAGIAAYGETLGKKLAAIEQEIVDAVGYPFNLNSP--KQLGEALFVKLGLPHGKK 544

Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+T   T   VL   +   P AI       + S+      + L++ +  DGR+  +   +
Sbjct: 545 TKTGWSTSADVLDKLRGAHP-AIDALLGYRKLSKLKSTYTDGLLKVIAPDGRIHSSFNQV 603

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             +RTGR S      QN+P  S    EL                         R   +A 
Sbjct: 604 -ETRTGRISSTEPNLQNIPVRSAEGREL-------------------------RRFFVAR 637

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
            G  LV AD + IE R+LA +A +   + AF   ED++  T ++ F + P  VT   R+ 
Sbjct: 638 PGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQVFGMPPEYVTPIMRSR 697

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTNSAPEEWEDAENFCRWMQENH 489
            K +   + Y  GA +  +    +    +++   +L K +   +  E      R ++E H
Sbjct: 698 AKAVNFGIVYGIGAFSLSQDIGVSVKEADSYIKGYLQKFSGVRDYME------RVIREAH 751

Query: 490 PEHAIEDLF 498
            +  +E LF
Sbjct: 752 EKGYVETLF 760


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +R  L + G  +         P    PR    H   +Q +T      +SDP+ LQ I   
Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLSSSDPN-LQNIPVR 674

Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R C I  +G     AD + IE R++A ++ ++  ++AF  G D++  T A+ +
Sbjct: 675 TDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAFREGHDIHRATAAKIW 734

Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441
           +V   +VT  QR   K     + Y
Sbjct: 735 HVDIDKVTDAQRKKAKQANFGIIY 758


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 16/169 (9%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q  T      +SDP+ LQ I         +R   +  EG  L+ AD + 
Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY-- 441
           IE R+LA ++ ++  + AF+   D++  T A  F V  A VT + R+  K +   + Y  
Sbjct: 631 IELRILAHISEDERLINAFKNNIDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGI 690

Query: 442 --QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
              G A+  +         +N +         P+  E  +N  R+ +EN
Sbjct: 691 SDYGLARDIKISRKEAAEFINKYFE-----RYPKVKEYLDNIVRFAREN 734


>gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC]
 gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC]
          Length = 868

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----L 376
            P Q      R H   +Q+ T        DP+ LQ I   S+  RS   A   KK     
Sbjct: 585 LPKQINAGTQRIHPTFNQVGTVTGRLSCQDPN-LQNIPVRSERGRSLREAFRVKKDNDYF 643

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R LA ++ ++   +AF +GED++  T ++ FNV   QVTK QR   K + 
Sbjct: 644 LAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN 703

Query: 437 LALGYQGGAKAFQKM 451
             L Y   A    K+
Sbjct: 704 FGLVYGQQAYGLSKI 718


>gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish]
 gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish]
          Length = 605

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 155/677 (22%), Positives = 235/677 (34%), Gaps = 185/677 (27%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           D+   G+ +  E  CV  FA+ +DD  +   L D V + +  Q   +  E  + TI+ HN
Sbjct: 40  DIETPGLDRAFEINCVT-FAWRWDDGSIHSVLLDPVGNTLHRQACIDLYERAE-TIILHN 97

Query: 73  SYFERTVLK--ACFNL--DIPIHRWICTLVLARSNGLPSALKAVGEALK------LSSQK 122
           + F+   L+    F    +I I++ + TL+LAR   LP     V ++L       L    
Sbjct: 98  APFDIPALRHAGLFGTSPNIAINKVVDTLLLARF-ALPDV--TVSKSLTALSIRYLGLSD 154

Query: 123 MEEGKELIARFCKGETHECLYDR---NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            ++G ++       +T +  Y+      P +R            D   T     +LEPL 
Sbjct: 155 FKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVG-------AMADTIATL----KLEPLL 203

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK- 238
                 W LD    D G   D      L     V R  L +  + L       +R  E+ 
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263

Query: 239 ---------LKTWLFLETGL--------HLEDLTETTCQ--RVLSSNKKLTPQAIQVFNN 279
                    L     LE G         +LE + +      R  +   K T   +  F++
Sbjct: 264 DAERIQHEALLAAHGLEGGAGKGKKIVEYLESIGQLPANWPRTPTGGLKATKDLLDGFDH 323

Query: 280 ------RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
                 R  A    VL   T VE   S  GR    +  LGAS TGR +  +   Q  P+ 
Sbjct: 324 PLTTAQRKLAEIDKVLGYLTKVERQASVTGRCHPQVGVLGASATGRMAYSMPELQQFPKD 383

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +R                                 +I  +G+ L   D + IE   +A M
Sbjct: 384 ARP--------------------------------IITDDGQGLTSIDWSQIEPVTMANM 411

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           AG+   L  FE GEDLY     RS  +    +TK+ R I KV+ LA  Y           
Sbjct: 412 AGDVGFLIPFEAGEDLY-EPIQRSCGLP---MTKEGRDIAKVVLLATMY----------- 456

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+ +N  A  +K N      E A+   R M    PE A                W  
Sbjct: 457 ---GMGVNGLA--LKIN---HTVESAQQIRRQMLAAMPESA---------------KWMA 493

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +   +++             + G+ I A  R                 +LP     V+R 
Sbjct: 494 RVQGIAD-------------QYGRIITAAGR-----------------ILPVDDGGVFRA 523

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHD 630
           V                 YT         VQ  + D+L + ++   +AG   ++ + +HD
Sbjct: 524 V----------------NYT---------VQGSALDVLHDTIVRMERAGLADELHVAMHD 558

Query: 631 EIVCETPDTDEFNASML 647
           E++  TP  DE    ML
Sbjct: 559 ELIVSTPVADEVQQIML 575


>gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276]
 gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s]
 gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768]
 gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222]
 gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074]
 gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301]
          Length = 866

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----L 376
            P Q      R H   +Q+ T        DP+ LQ I   S+  RS   A   KK     
Sbjct: 583 LPKQINAGTQRIHPTFNQVGTVTGRLSCQDPN-LQNIPVRSERGRSLREAFRVKKDNDYF 641

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R LA ++ ++   +AF +GED++  T ++ FNV   QVTK QR   K + 
Sbjct: 642 LAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN 701

Query: 437 LALGYQGGAKAFQKM 451
             L Y   A    K+
Sbjct: 702 FGLVYGQQAYGLSKI 716


>gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G  ++ AD + 
Sbjct: 471 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 529

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L AF  G+D++  T A  F     +VT +QR   K +   L Y  
Sbjct: 530 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 587

Query: 444 GAKAF 448
           G  AF
Sbjct: 588 GMSAF 592


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASE-GKKLVVADLAG 383
           P+  R H    Q +T      +++P+    P+++     +R   I  + G  ++ AD + 
Sbjct: 602 PQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLETGRKIRKVFIPRQRGNLILTADYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA M+ ++  L AF  G+D++  T +  F V   QVT + R+  K +   + Y
Sbjct: 662 IELRVLAHMSQDESFLDAFRQGQDIHTRTASEVFGVPMDQVTSEMRSRAKAVNFGIVY 719


>gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS]
 gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS]
          Length = 929

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 29/213 (13%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNT 293
           ++L+  LF E  +     T+T       + + L  +    F   + A R A    + ++ 
Sbjct: 575 KQLQAVLFDELAMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDG 634

Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           L+ ++ SDGR+  T  Q + A  TGR S      QN+P  + +   +             
Sbjct: 635 LLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIRTEAGRRIRDAF--------- 683

Query: 353 DPDPLQIISDCVRSCVIASEG----KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                      V S    S G     +L+ AD + IE R++A ++ +   ++AF TGEDL
Sbjct: 684 ----------VVESRPPGSGGGAVFTELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDL 733

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +R+F+V   +VT D R   K M   L Y
Sbjct: 734 HSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAY 766


>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 537

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H    Q +       + DP+    P++  +   +R   +A  G  +V AD + I
Sbjct: 365 PGTGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQI 424

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +   + AF  G+D++V T    F V  A VT + R   K +   + Y  G
Sbjct: 425 ELRVLAHLSKDPVLVDAFRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMG 484

Query: 445 AKAFQK 450
             A  K
Sbjct: 485 ESALAK 490


>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
 gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
          Length = 927

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G+KLV  D + IE R++A ++ +   L AF +G D++  T A  F     +
Sbjct: 688 IRRAFVAPPGRKLVACDYSQIELRIMAHLSQDPGLLGAFASGADIHRATAAEVFGRPLEE 747

Query: 424 VTKDQRAIGKVMELALGYQGGA 445
           VT ++R   K +   L Y  GA
Sbjct: 748 VTVNERRAAKAINFGLMYGMGA 769


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
           SR H   +Q +       ++DP+ LQ I         +R   +  +G + L+ AD + IE
Sbjct: 643 SRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGDGFESLMTADYSQIE 701

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  ++AF +GEDL+ T  ++ F+V  + V  + R   K M   L Y  G 
Sbjct: 702 LRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEMRRKIKAMSYGLAY--GL 759

Query: 446 KAF 448
            AF
Sbjct: 760 SAF 762


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 12/132 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I      S  +R   +  EG  L+ AD + IE 
Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIEL 753

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+  G+D++  T AR   +   +V+ D+R +GK +   + Y  GA 
Sbjct: 754 RILTHLSGEKVLQEAYRGGDDVHALT-ARLL-LDKDEVSPDERRLGKTINFGVIYGMGA- 810

Query: 447 AFQKMASTTGLN 458
             Q+ A  TG++
Sbjct: 811 --QRFARETGVS 820


>gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 317

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++G++  L AF +GEDL+ +  A  + V P +VT  QR+  K  
Sbjct: 89  LMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKAT 148

Query: 436 ELALGY 441
              L Y
Sbjct: 149 SYGLAY 154


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G  ++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L AF  G+D++  T A  F     +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
 gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
          Length = 941

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EGK LV  D + IE R+LA +A      +AF  G D++  T +  FNV   +
Sbjct: 701 IREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDE 760

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 761 MTPDVRRQAKAINFGVIY 778


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 124/323 (38%), Gaps = 80/323 (24%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q +T      +S+P+   I      S  +R   I  +   LV AD + IE
Sbjct: 679 KTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYSQIE 738

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA ++ E   L A++  ED++  T    F     ++T  +R +GK +   + Y  G+
Sbjct: 739 LRILAHLSQESVLLNAYQNAEDVHTVTAKLLFE--KEEITPQERNLGKTINFGVIYGMGS 796

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           + F + A                 SA E  E                     FI      
Sbjct: 797 QRFAREAGV---------------SATEGKE---------------------FIN----- 815

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILMLP 563
               +RQ++++V E    + +   + I NG    I+ R+R      Y     +NL     
Sbjct: 816 ---KYRQRYAKVFEYLENMKK---EAIANGYVTTILGRRR------YFNFFDDNLYRF-- 861

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNA 617
             R    + +  N+  +N    QL R            +Q  S DI+   M      +N 
Sbjct: 862 --RGHDPQTIDLNKLNINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILNY 913

Query: 618 TKAGYDIVLTVHDEIVCETPDTD 640
            +A  +++L VHDE+V E P+ +
Sbjct: 914 YQA--NLLLQVHDELVFEIPEKE 934


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 932

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G  ++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L AF  G+D++  T A  F     +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G  ++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L AF  G+D++  T A  F     +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 16/182 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q +T      +S+P+ LQ I         +R+  +A+ G   + AD + 
Sbjct: 631 PADGRVHTTFNQTVTATGRLSSSNPN-LQNIPIRTPEGRRLRAAFVAAAGHLFLAADYSQ 689

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           I+ RVLA  +G+    +AF   +D++  T A  F V    V+ D R + K +   + Y  
Sbjct: 690 IDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGM 749

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A    +    +     TF            +E  +   R+MQE   E A  D ++GT  
Sbjct: 750 SAFGLAEQLRCSRKEAQTFID--------RYFELYQGVLRFMQEIV-EQARRDGWVGTLL 800

Query: 504 ER 505
            R
Sbjct: 801 NR 802


>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238]
 gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238]
          Length = 928

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EGK LV  D + IE R+LA +A      +AF  G D++  T +  FNV   +
Sbjct: 688 IREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDE 747

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 748 MTSDVRRQAKAINFGVIY 765


>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
 gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
          Length = 1024

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG KL+ AD + IE R+LA +A      +AF  G D++  T +  F V   Q
Sbjct: 781 IRQAFVADEGHKLISADYSQIELRLLAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQ 840

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +T D R   K +   + Y  G  AF  +A   G+     A  +K
Sbjct: 841 MTPDLRRRAKTINFGIIY--GISAF-GLADRLGIPQGEAAAFIK 881


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386
            + H   +Q +T      ++DP+    P+++     +R   +AS EG K+V AD + IE 
Sbjct: 601 GKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVASKEGWKIVAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA ++G++   +AF TG D++  T    F+V   +VT   R   K +   + Y
Sbjct: 661 RVLAHISGDERMKEAFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIVY 715


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G  ++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L AF  G+D++  T A  F     +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 850

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q  T      +SDP+ LQ I         +R   +  EG  L+ AD + 
Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++ ++  + AF+   D++  T A  F V  A VT + R+  K +   + Y
Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVY 688


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA +G  ++ AD + 
Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L AF  G+D++  T A  F     +VT +QR   K +   L Y  
Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769

Query: 444 GAKAF 448
           G  AF
Sbjct: 770 GMSAF 774


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +R  L + G  +         P    PR    H   +Q  T      +SDP+ LQ I   
Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQTSTGRLSSSDPN-LQNIPVR 674

Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R C I  +G     AD + IE R++A ++G++  ++AF  G D++  T A+ +
Sbjct: 675 TDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIW 734

Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441
           +    +VT  QR   K     + Y
Sbjct: 735 HEDIEKVTDAQRKKAKQANFGIIY 758


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P   LP+  R H       T      +S+P+ LQ I         +R+  IAS+G  L+
Sbjct: 637 LPSYILPKTGRVHTNYSLATTSTGRLSSSEPN-LQNIPVRTAEGRKIRTAFIASKGYLLL 695

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA  A      +AF  G+D++  T A+ F VA   ++ + R   K +  
Sbjct: 696 SADYSQIELRVLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINF 755

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            + Y  G   F  +A+  G++    +H ++
Sbjct: 756 GIIY--GISPF-GLANQLGISRKEASHYIQ 782


>gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
 gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
          Length = 902

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 30/209 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+  LF E G+     T+T       +   L  Q    F   +   R  V +L   VE
Sbjct: 557 KQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHRD-VTRLKVTVE 615

Query: 297 AM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +      DGR+  T Q   A+ TGR S      QN+P                   I +
Sbjct: 616 GLRKSVGDDGRIHTTFQQTVAA-TGRLSSTEPNLQNIP-------------------IRT 655

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           D   L       R+ V   +   L+ AD + IE R++A ++ ++  ++AF +GEDL+   
Sbjct: 656 DEGRL-----IRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEGLIEAFRSGEDLHTFV 710

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
             ++F +   QVT + R   K M   L Y
Sbjct: 711 AMKAFGLPAEQVTPELRRRIKAMSYGLAY 739


>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
 gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Vibrio fischeri ES114]
          Length = 932

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 631 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 689

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++ ++  L AF  G+D++  T A    V+ 
Sbjct: 690 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSI 749

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            +VT + R   K +   L Y  G  AF
Sbjct: 750 EEVTSEDRRRAKAINFGLIY--GMSAF 774


>gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
 gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
          Length = 959

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA  G KL+ AD + IE R+LA +   +   KAF  G+D++  T +  F V  A 
Sbjct: 716 IRTAFIAKPGCKLISADYSQIELRLLAHIGDIEQLKKAFSDGQDIHAMTASEMFGVPMAD 775

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +T + R   K +   + Y  G   F  +A+  G++    +  +KT
Sbjct: 776 MTSEIRRRAKAINFGIIY--GISGF-GLANQLGIDQGEASRYIKT 817


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 9/133 (6%)

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKL 376
           V P    P   R H    Q+ T      + DP+ LQ I         +R   +   G   
Sbjct: 612 VLPGLVNPETGRLHTWFSQVGTATGRLSSKDPN-LQNIPIKTEEGRRIREAFVPQRGWWF 670

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE  +LA ++G+    +AF  GED++  T +  F V P  VT +QR I K + 
Sbjct: 671 LSADYSQIELVILAHLSGDPALCRAFREGEDVHRATGSLLFGVPPETVTPEQRRIAKTIN 730

Query: 437 LALGYQGGAKAFQ 449
             + Y  G  AF+
Sbjct: 731 FGVIY--GMSAFR 741


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 175/479 (36%), Gaps = 93/479 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAH 71
           +D    G+  Y +D  + L  FG   +P E W        V       AL+      V H
Sbjct: 40  LDTETTGLNIYQDDFGIRLIQFG---NPWESWVLPVERGGVFVGAAATALQKVQ-RFVIH 95

Query: 72  NSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL--PSALKAVGEALKLSS-------- 120
           N+ F+  V++    L +P+ + W         + L  P A K  G   KL          
Sbjct: 96  NAAFDLQVIERT--LGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDP 153

Query: 121 QKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
              EE K  +AR  K           L D + P++         Y   D  +   +  ++
Sbjct: 154 VTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYEL-------YAGMDTILVSRLLGKV 206

Query: 176 EPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            PL  +        E +L  +   +   G+ +DV  +  L++ + + + +    +    Y
Sbjct: 207 APLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSEDM-LRKAEHYTAVARYAY 265

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G V S    EKL   L   TG+ ++  T T  ++V   N +L     +  N   +A+  A
Sbjct: 266 G-VDSVNSTEKLADGL-ERTGVKIKGRTATNKRQV---NAELLEALAEEGNALAKAAIEA 320

Query: 288 V-------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                     +   +E  +++ R+   +  L A RTGR S      QNLP          
Sbjct: 321 KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW------ 373

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  VR C +A  G+ +   D    E RVLA ++G+Q  L+
Sbjct: 374 ----------------------MVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTMLR 411

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           AFE   DL+  T         A      R IGK+    + Y GGA    K+A+  G+  
Sbjct: 412 AFEEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAG---KLATNAGITF 458


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H   +Q +T      +S+P+   I      S  +R   I  +   LV AD + IE
Sbjct: 292 KTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYSQIE 351

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA ++ E   L A++  ED++  T    F     ++T  +R +GK +   + Y  G+
Sbjct: 352 LRILAHLSQEPVLLNAYQNTEDVHTVTAKLLFE--KEKITSQERNLGKTINFGVIYGMGS 409

Query: 446 KAFQKMASTTG 456
           + F + A  T 
Sbjct: 410 QRFAREAGVTA 420


>gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
          Length = 888

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIAS-EGKKLVVADLAGIE 385
           ++ H   +Q IT      +S+P+ LQ I         +R   I+S E   LV AD + IE
Sbjct: 612 NKIHSTFNQTITTTGRISSSNPN-LQNIPVRTEEGRIIRKVFISSSENNVLVDADYSQIE 670

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA ++ ++  + +F+  ED++  T +  FNV   +VT + R+  K +   + Y
Sbjct: 671 LRVLAHISKDEKLINSFKNNEDIHTRTASEVFNVPIDEVTSEMRSSAKAVNFGIVY 726


>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
 gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
          Length = 924

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   +A EG  +V  D + IE R++A ++ +   L+AF  G+D++  T +  F  +  +
Sbjct: 683 VRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDASLLRAFAQGQDIHRATASEVFGCSLEE 742

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 743 VTDEQRRRAKAVNFGLIY--GMSAF 765


>gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 908

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 631 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIE 689

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  ++AF +GEDL+ T  A+ F V  + V  + R   K M   L Y  G 
Sbjct: 690 LRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAMSYGLAY--GL 747

Query: 446 KAF 448
            AF
Sbjct: 748 SAF 750


>gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
          Length = 850

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q  T      +SDP+ LQ I         +R   +  EG  L+ AD + 
Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++ ++  + AF+   D++  T A  F V  A VT + R+  K +   + Y
Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVY 688


>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
 gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
          Length = 932

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G ++         P    P   R H    Q +T      ++DP+ LQ I       
Sbjct: 631 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 689

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++ ++  L AF  G+D++  T A    V+ 
Sbjct: 690 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSI 749

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448
            +VT + R   K +   L Y  G  AF
Sbjct: 750 EEVTSEDRRRAKAINFGLIY--GMSAF 774


>gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 907

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 630 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 688

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ ++  ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y  G 
Sbjct: 689 LRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAY--GL 746

Query: 446 KAF 448
            AF
Sbjct: 747 SAF 749


>gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
 gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
          Length = 894

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 32/210 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+T LF E  L      ++      +S K L  +    F  ++ A R A  KL  ++E
Sbjct: 549 KQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLEKTGHEFLVQLMAHREAA-KLRQMIE 607

Query: 297 AMNS----DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           ++      DGR+  T      + TGR S      QN+P   RS E               
Sbjct: 608 SLKKSVAEDGRIHTTYA-QNVAATGRISSNNPNLQNIP--IRSEE--------------- 649

Query: 353 DPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      VR   + S+G + L+ AD + IE R++A ++G+   ++A++ GEDL+  
Sbjct: 650 --------GRRVRGIFVVSDGYECLLSADYSQIEMRIMAHLSGDAGLIQAYKDGEDLHRF 701

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             +  F+V   QVT   R+  K M   L Y
Sbjct: 702 VGSNIFHVPTDQVTSAMRSKVKAMSYGLAY 731


>gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
 gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
          Length = 933

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  GK LV  D + IE R+LA +AG     +AF +G+D++  T +  FNV   +
Sbjct: 693 IREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHAATASEMFNVPLEE 752

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 753 MTPDVRRQAKAINFGVIY 770


>gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
 gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
          Length = 910

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q++       + DP+ LQ I         +R   +  +G + L+ AD + IE
Sbjct: 633 GRIHTTFNQMVAATGRLSSQDPN-LQNIPIRTAEGRRIRQAFVVGKGYEALLTADYSQIE 691

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            R++A ++ +Q  ++AF +G D +  T A  F V P QV  + R   K M   L Y
Sbjct: 692 MRIMAHLSQDQALIEAFRSGFDFHAATAASVFGVRPEQVDAEMRRRVKAMNYGLAY 747


>gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN]
          Length = 870

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 140/353 (39%), Gaps = 56/353 (15%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           LS  E  L  +  ++   G  +DV     L  + + E   L +E+  L+ G   + +  +
Sbjct: 473 LSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELAVLTEEIYDLS-GRPFNIKSPK 531

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   L+ E GL   D  ++T   VL + +   P        ++ A R+    L+T V+A
Sbjct: 532 QLSDILYNELGLRPIDKAKSTRAEVLEALRSEHP-----IIEKLLAFRTIEKLLSTYVKA 586

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +                          P Q      R H   DQ  T        DP+  
Sbjct: 587 L--------------------------PKQVDSHTQRIHPSFDQTGTVTGRLACRDPNLQ 620

Query: 358 QIISDCVRSCVI------ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I     R  ++      + +    + AD + IE R LA ++ ++    AFE+GED++  
Sbjct: 621 NIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAF 680

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T ++ F+V   QV+K+QR   K +   + Y  G +AF  +A    +++     L++   +
Sbjct: 681 TASQVFHVPLEQVSKEQRMQAKTVNFGIVY--GQQAF-GLAKVLKISVGEAQELIQAYFS 737

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
              + +  +F     E   + A +DL + T   R          R+ + WNE 
Sbjct: 738 --RYPEIAHFV----EETIQQAAKDLRVTTMLGR---------ERIIDSWNEF 775


>gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L]
 gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L]
          Length = 996

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q +T      +S P+    P++   S  +R   I   G  LV AD + IE R+
Sbjct: 707 RVHTDFNQTVTTTGRLSSSSPNLQNIPIRTDFSRQIRKGFIPESGWLLVSADYSQIELRI 766

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ E   ++A++T  D++  T    F+     +T ++R +GK++   + Y  GA+ F
Sbjct: 767 LAHLSQEPVLVEAYQTQADVHTLTAQMLFD--KEDITAEERRLGKIINFGVIYGMGAQRF 824

Query: 449 QKMASTT 455
            + A  +
Sbjct: 825 AREAKVS 831


>gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4]
          Length = 901

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 32/215 (14%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF + G+     T+T   T   VL       P    +   R  A   +    + 
Sbjct: 559 KQLGVILFEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQLAKLKSTYA-DG 617

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   ++ DGR+R T      + TGR S      QN+P       E+ ++    P      
Sbjct: 618 LAACVDEDGRIRSTF-MQTVTATGRISSTEPNLQNIPIRMELGREIRKVF--YPKK---- 670

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                   DCV            + AD + IE RVLA M+G++  + AF+ G+D++ +T 
Sbjct: 671 --------DCV-----------FLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTA 711

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +  FN    +VT  QR   K +   + Y  G  AF
Sbjct: 712 SLVFNTPFDEVTDLQRRRAKAVNFGIVY--GISAF 744


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 32/170 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
           F   + A R A    + ++ L+ ++ SDGR+  T  Q + A  TGR S      QN+P  
Sbjct: 608 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 665

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
           + +                            +R   +  +G  +L+ AD + IE R++A 
Sbjct: 666 TEAGRR-------------------------IRDAFVVGDGYAELMTADYSQIEMRIMAH 700

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ +   ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 701 LSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAY 750


>gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3]
 gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3]
          Length = 945

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
            R H   +Q I       ++DP+ LQ I           R+ V+ +  + L+ AD + IE
Sbjct: 668 GRIHTTFNQTIAATGRLSSADPN-LQNIPIRTAEGRQIRRAFVVGAGYETLLTADYSQIE 726

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  ++AF +GEDL+    A +F +  ++V  + R   K M   L Y  G 
Sbjct: 727 MRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAMSYGLAY--GL 784

Query: 446 KAF 448
            AF
Sbjct: 785 SAF 787


>gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E]
 gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I
 gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
 gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]
 gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
 gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
 gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22]
          Length = 867

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   ED++  T  + FN+   +
Sbjct: 630 IREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQIFNLKKHE 689

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +T + R   K +   + Y  G  AF
Sbjct: 690 LTSEHRRKAKAINFGIIY--GISAF 712


>gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f]
 gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f]
          Length = 891

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
            R H   +Q+I       ++DP+ LQ I           R+ V+    + L+ AD + IE
Sbjct: 614 GRIHTTFNQMIAATGRLSSTDPN-LQNIPIRTPQGRQIRRAFVVGPGYETLLTADYSQIE 672

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G+   ++AF +GEDL+    A++F++  ++V  + R   K M   L Y  G 
Sbjct: 673 MRLMAHLSGDAGLIEAFASGEDLHTFVAAQAFDLPVSEVDPELRRRIKAMSYGLAY--GL 730

Query: 446 KAF 448
            AF
Sbjct: 731 SAF 733


>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans]
          Length = 922

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 28/219 (12%)

Query: 255 TETTCQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------E 296
           ++   QR+L++ +K    A + FN     +++A     LKL  L+              E
Sbjct: 550 SQVLSQRMLAAQQKAVALAGRSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEEALE 609

Query: 297 AMNSDGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           A+     L R  L++ G ++         P    P   R H    Q         +SDP+
Sbjct: 610 AIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAATGRLSSSDPN 669

Query: 356 PLQII------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            LQ I         +R   +A  G+KL+  D + IE R++A ++ +   L+AF  G D++
Sbjct: 670 -LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSEDPGLLRAFSQGVDVH 728

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
             T A  F     QV+ ++R   K +   L Y  G  AF
Sbjct: 729 RATAAEVFGRTLEQVSANERRAAKAINFGLMY--GMSAF 765


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 136/352 (38%), Gaps = 83/352 (23%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P   LP   R H     + T L   ++S    LQ I         +R+  +AS+G  L+
Sbjct: 680 LPSYILPTTGRVHTNYS-LATTLTGRLSSSEPNLQNIPVRTAEGRKIRAAFVASKGHLLL 738

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA +A      +AF  G+D++  T ++ F VA   +T + R   K +  
Sbjct: 739 SADYSQIELRILAHVADITALKEAFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINF 798

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y  G   F  +AS  G++                 ++A ++ +   E  P   IED 
Sbjct: 799 GIIY--GISPF-GLASQLGIS----------------RKEASDYIQLYFERFP--GIEDY 837

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 ER K   R             H  + +TI           R +    +K DK  
Sbjct: 838 M-----ERTKIFAR-------------HYGYVETIFG---------RRIHYPEIKTDK-- 868

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                P  RS       N R+ +N   +         G   + I +A+   I  E  +  
Sbjct: 869 -----PQIRSF------NERAAINAPIQ---------GSAADIIRRAM---IQMENALEK 905

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN---PSWAKGLPLKAE 666
            +    ++L VHDE++ E P ++    ++L   +  N   P+ +  +PL+ +
Sbjct: 906 ERLSAKMLLQVHDELIFEVPKSESKKTTILIKKVMENATMPALSLSVPLEVK 957


>gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
 gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
          Length = 978

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H + +Q  T      +S+P+    P++   S  +R   +   G  +V AD + I
Sbjct: 685 PDTQRVHTDFNQAATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPEAGWLMVAADYSQI 744

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E   ++A++  ED++  T    F     ++T ++R I K +   + Y  G
Sbjct: 745 ELRILAHLSQEPILVQAYQQNEDVHTVTGRLVFE--KEKITSEERGIAKTINFGVIYGMG 802

Query: 445 AKAFQKMASTTGLNLNTFAHLVK 467
           +  F +   +TG++ N     +K
Sbjct: 803 SLRFSR---STGIDKNIANEFIK 822


>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
 gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
          Length = 928

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   IA +   +  AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPQDYVIASADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLESVTAEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 10/132 (7%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCVIASEGKKL 376
            P    P   R H    Q +T      +++P+ LQ I        +  R+ +  S+  +L
Sbjct: 666 LPTMKDPVDGRVHTSYMQTVTATGRLSSNNPN-LQNIPIRSERGKEIRRAFIARSKDFQL 724

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A +A +   ++AF+   D++  T A+ F+V    VTKDQR+  K + 
Sbjct: 725 MSADYSQIELRIIAALADDTNMIQAFKDKVDIHRATAAKVFHVELDDVTKDQRSAAKAVN 784

Query: 437 LALGYQGGAKAF 448
             + Y  G  AF
Sbjct: 785 FGIIY--GQSAF 794


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P   LP+  R H      IT      +S+P+ LQ I         +R+  IA +G  L+
Sbjct: 680 LPSYILPKTGRVHTNYSLAITSTGRLSSSEPN-LQNIPVRTAEGRKIRTAFIAPKGHVLL 738

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA +A  +   +AF  G D++  T ++ F VA   +  D R   K +  
Sbjct: 739 SADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINF 798

Query: 438 ALGYQGGAKAFQKMASTTGLN 458
            + Y  G  AF  +A+  G++
Sbjct: 799 GIIY--GISAF-GLANQLGIS 816


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCVIASEGKKLVVADLA 382
           P+  R H   +Q++       +SDP+ LQ I       S   R+ V      +LV AD +
Sbjct: 676 PQSGRIHTSFNQVVAATGRLSSSDPN-LQNIPIRTPEGSRIRRAFVSCDPEWRLVCADYS 734

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA  + +   + AFE GED++    A+   VA   VT D R I K +   + Y
Sbjct: 735 QIELRMLAHFSQDPALVSAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMY 793


>gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70]
 gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s]
 gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923]
 gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2]
 gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150]
 gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023]
          Length = 866

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----L 376
            P Q      R H   +Q+ T        DP+ LQ I   S+  RS   A   KK     
Sbjct: 583 LPKQINAGTQRIHPTFNQVGTVTGRLSCQDPN-LQNIPVRSERGRSLREAFRVKKDNDYF 641

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R LA ++ ++   +AF +GED++  T ++ FNV   QVTK QR   K + 
Sbjct: 642 LAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN 701

Query: 437 LALGYQGGAKAFQKM 451
             L Y   A    K+
Sbjct: 702 FGLVYGQQAYGLSKI 716


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q +T      + DP+ LQ I         +R   IA  G  ++ AD + 
Sbjct: 655 PISGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPAGYCILAADYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 714 IELRIMAHLSQDKGLLAAFAEGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIY-- 771

Query: 444 GAKAF 448
           G  AF
Sbjct: 772 GMSAF 776


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 32/170 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
           F   + A R A    + ++ L+ ++ SDGR+  T  Q + A  TGR S      QN+P  
Sbjct: 614 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 671

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
           + +                            +R   +  +G  +L+ AD + IE R++A 
Sbjct: 672 TEAGRR-------------------------IRDAFVVGDGYAELMTADYSQIEMRIMAH 706

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ +   ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 707 LSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAY 756


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P   L +  R H      IT      +S+P+ LQ I         +R+  IA +G  L+
Sbjct: 680 LPSYILSKTGRIHTNYSLAITSTGRLSSSEPN-LQNIPVRTTEGRKIRTAFIAPKGHMLL 738

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA +A      +AF  G+D++  T ++ F VA   +  D R   K +  
Sbjct: 739 SADYSQIELRILAHIADIIALKEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAINF 798

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            + Y  G  AF  +A+  GL+    +H ++
Sbjct: 799 GIIY--GISAF-GLANQLGLSRQEASHYIQ 825


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q +T      +++P+    P+++ +   +R   +A+E  + + AD + +
Sbjct: 619 PETGRIHSNFNQTVTTTGRISSTEPNLQNIPIKLEMGRRLRKVFVANENHQFIDADYSQV 678

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA +  ++  L AF   +D++  T A  F+V   +VT   R+  K +   + Y
Sbjct: 679 ELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDSMRSSAKAVNFGIVY 735


>gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183]
 gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183]
          Length = 870

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 108/488 (22%), Positives = 185/488 (37%), Gaps = 79/488 (16%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSAL 109
           ++P +LK+     D+T   +N   +R    A  N  I I      L LA   +NG     
Sbjct: 352 ILP-ILKDFFLREDLTFYGYN--LKRDC-HALLNAGIVIREISYDLALAEHLTNG----- 402

Query: 110 KAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
              G  +   S  +  G  E   RF K   +  L     P   E +  FGE+      + 
Sbjct: 403 ---GGKISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQY--FGEFVAYLPIIK 457

Query: 169 REIFKRL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             I + +        LS  E  L  +  ++   G  +DV     L  + + E   L +E+
Sbjct: 458 DAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEI 517

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
             L+ G  +  +  ++L   L+ E GL   D  ++T   VL + +   P        ++ 
Sbjct: 518 YDLSGGPFNI-KSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHP-----IIEKLL 571

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A R+    L+T V+A+                          P Q      R H   DQ 
Sbjct: 572 AFRTIEKLLSTYVKAL--------------------------PKQVDSHTQRIHPSFDQT 605

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLVVADLAGIEARVLAWMAGEQ 396
                     DP+   I     R  ++      + +    + AD + IE R LA ++ ++
Sbjct: 606 GAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQDK 665

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               AFE+GED++  T ++ F+V   QV+K+QR   K +   + Y  G +AF  +A    
Sbjct: 666 SLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVY--GQQAF-GLAKVLK 722

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +++     L++   +   + +  +F     E   + A +DL + T   R          R
Sbjct: 723 ISIGEAQELIQAYFS--RYPEIAHFV----EETIQQAAKDLRVTTMLGR---------ER 767

Query: 517 VSELWNEL 524
           + + WNE 
Sbjct: 768 IIDSWNEF 775


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 30/186 (16%)

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330
            A+Q   +  +A+++    ++ L + +NS  G++  +L   GA  +GR+S C  P  Q +P
Sbjct: 1914 AVQALRDYRKAAKAITTFVDKLPQHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 1971

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389
            R  R                            C V S  +A    K ++AD + IE R+ 
Sbjct: 1972 RERR-------------------------FRACFVPSAKVAGRPGKFIIADFSQIELRIA 2006

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A +A ++  ++A++ GEDL+  T +   N   + ++K  R + K +   L Y   A  F+
Sbjct: 2007 ADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQLAKAVNFGLIYGMSADRFR 2066

Query: 450  KMASTT 455
              AS+ 
Sbjct: 2067 GYASSA 2072


>gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
          Length = 925

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382
           LP+  R H    Q +       +++P+ LQ I         VR    A +   +V AD +
Sbjct: 644 LPQTGRVHTNYAQAVAITGRLASNNPN-LQNIPIRTEQGRRVRRAFTAPQNCVIVSADYS 702

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R++A ++G+     AF   ED++  T A  F +AP  +T +QR   K +   L Y
Sbjct: 703 QIELRIMAHLSGDTTLQAAFHNNEDVHRRTAAEVFGMAPEHITSEQRRYAKTINFGLIY 761


>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
 gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
          Length = 928

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + I
Sbjct: 651 KTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQI 709

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  G
Sbjct: 710 ELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIY--G 767

Query: 445 AKAF 448
             AF
Sbjct: 768 MSAF 771


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A +GK L+ AD A IE  +LA ++ ++  ++AF+ G D++  T A  F +   +
Sbjct: 703 IRKAFQAEKGKNLISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFGMPIGE 762

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449
           V  D R I K +   + Y  G  AF+
Sbjct: 763 VLPDMRRIAKTINFGVMY--GMSAFR 786


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG  L+  D + IE R+LA +AG     +AF  G+D++  T +  FNV  ++
Sbjct: 709 IREAFVAEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSE 768

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 769 MTPDIRRQAKAINFGVIY 786


>gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
 gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
          Length = 811

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +++P+    P+++ +   +R   +  +G   + AD + IE R
Sbjct: 536 GRIHSTFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPEDGYVFLDADYSQIELR 595

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA M+G++  ++A+   ED++  T ++ F+V   +VT  QR   K +   + Y
Sbjct: 596 VLAHMSGDEKLIQAYREAEDIHRLTASQVFHVPFDEVTDLQRRNAKAVNFGIVY 649


>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
 gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
          Length = 944

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H     +        ++DP+    P++  I   +R   +A EG  L+ AD + I
Sbjct: 665 PRSGRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDAFVAEEGNVLLAADYSQI 724

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+ A MA      +AF  GED++  T    F     +VT+D RA  K +  A+ Y
Sbjct: 725 ELRLAAHMADVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILY 777


>gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 849

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +++P+    P+++ +   +R   +  EG   + AD + IE R
Sbjct: 574 GRIHSTFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPEEGYVFLDADYSQIELR 633

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA M+G++  ++A++  +D++  T +  F+V   +VT  QR   K +   + Y
Sbjct: 634 VLAHMSGDEKLIQAYKEAQDIHRHTASEVFHVPFDEVTDLQRRNAKAVNFGIVY 687


>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
 gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
          Length = 935

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 27/151 (17%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L E +N D GR+  +    GA+ TGR S      QN+P   RS E             
Sbjct: 648 DALQEHINKDTGRVHTSYVISGAN-TGRLSSTDPNLQNIP--VRSEE------------- 691

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +A EGK +V  D + IE R+LA MA      +AF  G+D++ 
Sbjct: 692 ----------GRRIREAFVAPEGKTIVALDYSQIELRILAHMAEIDALKQAFRDGQDIHA 741

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  FNV   ++T + R   K +   + Y
Sbjct: 742 MTASEMFNVPMDEMTSEIRRQAKAINFGVIY 772


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+   I      S  +R   +   G +L+ AD + IE R
Sbjct: 705 GRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQAGWQLLSADYSQIELR 764

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +L  ++GE+   +A+  G+D++  T AR   +    VT D+R +GK +   + Y  GA  
Sbjct: 765 ILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LEKKAVTADERRLGKTINFGVIYGMGA-- 820

Query: 448 FQKMASTTGLN 458
            Q+ A  TG++
Sbjct: 821 -QRFARETGVS 830


>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS]
          Length = 904

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 11/157 (7%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G S+         P    P   R H    Q         +SDP+ LQ I       
Sbjct: 605 LEYRGLSKLKSTYTDKLPRMISPATGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAG 663

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             VR   IA +GK L+ AD + IE R++A ++ +    +AF  GED++  T +  F V  
Sbjct: 664 RRVREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPL 722

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           A+V  +QR   K +   L Y  G   F  +AS  G+ 
Sbjct: 723 AEVGAEQRRAAKAINFGLIY--GMGVF-GLASNLGIT 756


>gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 897

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 29/180 (16%)

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           T   + V   R R      + +  L++++ +DGR+  T     A+ TGR S      QN+
Sbjct: 588 TDHELPVIMLRHREQAKLRVTVEGLIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNI 646

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388
           P   R+ E                          +R   +  EG + L+ AD + IE RV
Sbjct: 647 P--VRTDE-----------------------GRAIRRGFVVGEGYESLMTADYSQIELRV 681

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y  G  AF
Sbjct: 682 MAHLSQDEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAY--GLSAF 739


>gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
 gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
          Length = 904

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +A EG + L+ AD + IE R++A ++ +   ++AF +GEDL+    +R F V+P 
Sbjct: 663 IRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDLHNFVASRVFGVSPD 722

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
            V    R+  K +   L Y  G  AF
Sbjct: 723 AVDPAMRSKTKAVSYGLAY--GLSAF 746


>gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 863

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T     AS TGR S      QN+P  + +  +            
Sbjct: 577 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 623

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  I  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 624 -------------IRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLH 670

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               ++ F+V   +VT + R   K M   L Y  G  AF
Sbjct: 671 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLVY--GLSAF 707


>gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 908

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 29/180 (16%)

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           T   + V   R R      + +  L++++ +DGR+  T     A+ TGR S      QN+
Sbjct: 599 TDHELPVIMLRHREQAKLRVTVEGLIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNI 657

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388
           P   R+ E                          +R   +  EG + L+ AD + IE RV
Sbjct: 658 P--VRTDE-----------------------GRAIRRGFVVGEGYESLMTADYSQIELRV 692

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y  G  AF
Sbjct: 693 MAHLSQDEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAY--GLSAF 750


>gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
 gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
          Length = 1046

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 112/253 (44%), Gaps = 39/253 (15%)

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQF 310
           T      ++++N++LT    ++   ++   R+    L+T +E +    + + R+  T   
Sbjct: 720 TNVEVLEMIANNRELTEDK-RMIGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHTTFNQ 778

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
            G S TGR S      QN+P                   + +D D ++I     R+  ++
Sbjct: 779 NGTS-TGRLSSANPNLQNIP-------------------VRTD-DGIRI-----RTGFVS 812

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS--FNVAPAQVTKDQ 428
            EG  L+  D + IE RVLA ++ ++  ++A++  +DL+  T AR   F     ++++ +
Sbjct: 813 KEGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLT-ARKIFFKTEEDEISRHE 871

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R+I KV+  ++ Y  G   F  ++   G+ +   +  + T    EE+     F   + E 
Sbjct: 872 RSIAKVINFSILY--GKTPFG-LSKELGITVQEASQYITT--YFEEYPRVRKFLDIVTET 926

Query: 489 HPEHAIEDLFIGT 501
              H   + F GT
Sbjct: 927 AKLHGFVETFYGT 939


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H   +Q +T      +SDP+ LQ I         +R C I   G     AD + 
Sbjct: 642 PRTGRIHTSFNQTVTATGRLSSSDPN-LQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++ ++  ++AF  G D++  T AR ++    +VT  +R   K     + Y
Sbjct: 701 IELRIMAHLSEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIY 758


>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
 gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
          Length = 899

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD--PLQIISDC---VRSCVIASEG-KKLVVADLAGIEA 386
            R H   +Q I       +++P+   + I +D    +R   +  +G  +L+ AD + IE 
Sbjct: 622 GRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVGDGYSELMTADYSQIEM 681

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A ++ ++  ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 682 RIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 736


>gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
 gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
          Length = 420

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q IT      +++P+    P ++ +   +R   +  EG   V AD + IE RV
Sbjct: 146 RIHGKFNQTITATGRISSTEPNLQNIPARVELGRAIRKVFLPEEGYTFVDADYSQIELRV 205

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ ++  + A+E  +D++  T +  F V   QV+  QR   K +   + Y  G  AF
Sbjct: 206 LAHLSRDKNLIHAYEMEQDIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVY--GLSAF 263


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +R  L + G  +         P    PR    H   +Q  T      +SDP+ LQ I   
Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLSSSDPN-LQNIPVR 674

Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R C I  +G     AD + IE R++A ++G++  ++AF  G D++  T A+ +
Sbjct: 675 TDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIW 734

Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441
           +    +VT  QR   K     + Y
Sbjct: 735 HEDIDKVTDAQRKKAKQANFGIIY 758


>gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10]
          Length = 887

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 36/246 (14%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A TL Q+ +    KL Q+LE   Y        L   ++L   LF + GL +   T+T   
Sbjct: 508 ASTLIQLQNEFAVKL-QDLEKKIYQQAGEEFNLNSPKQLGHILFEKLGLPVLKKTKTGYS 566

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  T
Sbjct: 567 TSVEVLDQLKTQSPIVKEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 623

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +   +++ +        + SDPD        + SC         
Sbjct: 624 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSDPDG------YIFSC--------- 662

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435
              D + +E RVLA ++G+    +AF+TG D++  T  + F++ +P +VT   R   K +
Sbjct: 663 ---DYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAMKIFHLDSPDKVTPLMRRHAKAV 719

Query: 436 ELALGY 441
              + Y
Sbjct: 720 NFGIVY 725


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 10/131 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q +T      +S+P+   I      S  +R   +  +  KL+ AD + IE R+
Sbjct: 696 RVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQKDWKLLSADYSQIELRI 755

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           L  ++GE+    A+   ED++  T    F      +  D+R IGK +   + Y  GA   
Sbjct: 756 LTHLSGEEVLKNAYLKNEDVHSLTAKLLFE--KDAIDADERRIGKTINFGVIYGMGA--- 810

Query: 449 QKMASTTGLNL 459
           Q+ A +TG++L
Sbjct: 811 QRFARSTGVSL 821


>gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
 gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   + S G   +  D + IE R+LA  + +   L+AF+ GED++  T A  F + P  
Sbjct: 653 LRQAFLPSSGYIFISGDYSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPEL 712

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           V+++ R   KV+   + Y  G  AF
Sbjct: 713 VSREMRRQAKVINFGIIY--GMSAF 735


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382
           LP   R H   +Q  T      ++DP+ LQ I         +R   +   G   V AD +
Sbjct: 613 LPETGRIHTSFNQTATATGRLSSTDPN-LQNIPIRTEEGRQIRKAFVPRPGWTFVSADYS 671

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +E R+LA  + +   ++AFE  ED++  T +  F + P  +T+D R   K +   + Y
Sbjct: 672 QVELRILAHYSQDPILIEAFENDEDIHTRTASEVFQLFPEMITEDVRRQAKAINFGIVY 730


>gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029]
 gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138]
 gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029]
 gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138]
          Length = 870

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 108/488 (22%), Positives = 185/488 (37%), Gaps = 79/488 (16%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSAL 109
           ++P +LK+     D+T   +N   +R    A  N  I I      L LA   +NG     
Sbjct: 352 ILP-ILKDFFLREDLTFYGYN--LKRDC-HALLNAGIVIREISYDLALAEHLTNG----- 402

Query: 110 KAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
              G  +   S  +  G  E   RF K   +  L     P   E +  FGE+      + 
Sbjct: 403 ---GGKISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQY--FGEFVAYLPIIK 457

Query: 169 REIFKRL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             I + +        LS  E  L  +  ++   G  +DV     L  + + E   L +E+
Sbjct: 458 DAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEI 517

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
             L+ G   + +  ++L   L+ E GL   D  ++T   VL + +   P        ++ 
Sbjct: 518 YDLS-GRPFNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHP-----IIEKLL 571

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A R+    L+T V+A+                          P Q      R H   DQ 
Sbjct: 572 AFRTIEKLLSTYVKAL--------------------------PKQVDSHTQRIHPSFDQT 605

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLVVADLAGIEARVLAWMAGEQ 396
                     DP+   I     R  ++      + +    + AD + IE R LA ++ ++
Sbjct: 606 GAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQDK 665

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               AFE+GED++  T ++ F+V   QV+K+QR   K +   + Y  G +AF  +A    
Sbjct: 666 SLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVY--GQQAF-GLAKVLK 722

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +++     L++   +   + +  +F     E   + A +DL + T   R          R
Sbjct: 723 ISIGEAQELIQAYFS--RYPEIAHFV----EETIQQAAKDLRVTTMLGR---------ER 767

Query: 517 VSELWNEL 524
           + + WNE 
Sbjct: 768 IIDSWNEF 775


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS------EGKKLVVADLAG 383
           P   R H  L Q +       + DP+   I         I S      EG KL+ AD + 
Sbjct: 679 PVTGRVHTSLKQDVAATGRLSSQDPNLQNIPVRTAEGRAIRSAFQPGIEGWKLMAADYSQ 738

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA  +G+    +AF +  D++    ++ + VAP  VT + R   K +   + Y  
Sbjct: 739 IELRVLAHFSGDAALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSAKAINFGVIY-- 796

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           G   F  +A + G+  +  A  +    A  ++   ++F R
Sbjct: 797 GQSPF-GLARSLGIENDEAAAFISAYFA--QYPGVDDFMR 833


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H   +Q +T      +SDP+ LQ I         +R C I   G     AD + 
Sbjct: 642 PRTGRIHTSFNQTVTATGRLSSSDPN-LQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++ ++  ++AF  G D++  T AR ++    +VT  +R   K     + Y
Sbjct: 701 IELRIMAHLSEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIY 758


>gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
 gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
          Length = 886

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF+ GED++  T  R FN+A P  VT + R 
Sbjct: 654 EDSVLLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRR 713

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 714 NAKAVNFGVVY 724


>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
 gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
          Length = 928

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +T      ++DP+ LQ I         +R   I  +   +V AD + 
Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIPPKDHVIVSADYSQ 708

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIY-- 766

Query: 444 GAKAF 448
           G  AF
Sbjct: 767 GMSAF 771


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           P+  R H   +Q +T      +S+P+   I I D     +R   I  +G     AD + I
Sbjct: 657 PKTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 716

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  + AF +G D++  T A+ + V   +VT D R   K     + Y
Sbjct: 717 ELRIMAHLSEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 773


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           P+  R H   +Q +T      +S+P+   I I D     +R   I  +G     AD + I
Sbjct: 663 PKTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 722

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  + AF +G D++  T A+ + V   +VT D R   K     + Y
Sbjct: 723 ELRIMAHLSEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 779


>gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20]
          Length = 945

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 67/158 (42%), Gaps = 31/158 (19%)

Query: 289 LKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +KL   VE    A+  DGR+  T Q   A+ TGR S      QN+P     HEE  +I  
Sbjct: 651 IKLRQTVEGLRKAIQPDGRIHTTFQQTIAA-TGRLSSTDPNLQNIPA---RHEEGMRI-- 704

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403
                               R      EG + L+ AD + IE R++A ++ +Q  + AF 
Sbjct: 705 --------------------REAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIDAFR 744

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +GEDL+    A    +    VT  QR+  K M   L Y
Sbjct: 745 SGEDLHRYVAALVHGIDVEDVTAQQRSHVKAMSYGLAY 782


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 8/124 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAGI 384
           R  R H   +Q +T      +++P+   I     +   +R   I S+ + L++ AD + +
Sbjct: 680 RTGRIHTSFNQAVTATGRLSSTNPNLQNIPVREEMGRRIRRAFIPSDEEHLLLSADYSQV 739

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G++  + AF  GED++  T A+ FN    +VT ++R   K     + Y  G
Sbjct: 740 ELRLMAHLSGDESLIAAFAHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIY--G 797

Query: 445 AKAF 448
             AF
Sbjct: 798 ISAF 801


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P     H   +Q IT      +S+P+ LQ I         +R   I   G +   AD + 
Sbjct: 645 PETGHIHTSFNQTITTTGRLSSSNPN-LQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQ 703

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF  G D++  T A+ +     +VT+++R+  K     + Y
Sbjct: 704 IELRIMAHLSGDPHMIEAFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANFGIIY 761


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +R  L + G  +         P    PR    H   +Q  T      +SDP+ LQ I   
Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLSSSDPN-LQNIPVR 674

Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R C I  +G     AD + IE R++A ++G++  ++AF  G D++  T A+ +
Sbjct: 675 TDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIW 734

Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441
           +    +VT  QR   K     + Y
Sbjct: 735 HEDIDKVTDAQRKKAKQANFGIIY 758


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 28/157 (17%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +TL   M+ +GR+  +   + ++ TGR S      QN+P   R+ E              
Sbjct: 682 DTLPHHMDENGRIHTSFS-MASTTTGRLSSSEPNLQNIP--VRTEE-------------- 724

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R+  +A +GKKL+ AD + IE R+LA +A       AF+ G D++  
Sbjct: 725 ---------GRAIRTAFVAPKGKKLLSADYSQIELRILAHIADIPQLKDAFQNGVDIHAM 775

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           T +  FNV    +    R   K +   + Y  G  AF
Sbjct: 776 TASEMFNVPVEGMEPSVRRRAKAINFGIIY--GISAF 810


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 12/132 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I      S  +R   +  +G  L+ AD + IE 
Sbjct: 703 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQDGWTLLSADYSQIEL 761

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+  G+D++  T AR   +   +V+ D+R +GK +   + Y  GA 
Sbjct: 762 RILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LDKDEVSPDERRLGKTINFGVIYGMGA- 818

Query: 447 AFQKMASTTGLN 458
             Q+ A  TG++
Sbjct: 819 --QRFARETGVS 828


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           P+  R H   +Q +T      +S+P+   I I D     +R   I  +G     AD + I
Sbjct: 663 PKTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 722

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  + AF +G D++  T A+ + V   +VT D R   K     + Y
Sbjct: 723 ELRIMAHLSEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 779


>gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4]
 gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4]
          Length = 868

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 364 VRSCVIASEGKKLVV--ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   +A EG   V+  AD + IE RVLA ++ +    +AF  GED++  T A  F V+P
Sbjct: 623 IRQAFVA-EGPDYVLLSADYSQIELRVLAHLSEDPGLCEAFVKGEDIHARTAAEIFGVSP 681

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT + RA  KV+   + Y
Sbjct: 682 QEVTPEMRAKAKVVNFGIVY 701


>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
          Length = 875

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF---QKMASTTG 456
           +T + R   K +   + Y  G  AF   +++ +T G
Sbjct: 698 LTSEHRRKAKAINFGIIY--GISAFGLAKQLNATNG 731


>gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
 gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
          Length = 909

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 32/170 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
           F   + A R A    + ++ L+ ++ +DGR+  T  Q + A  TGR S      QN+P  
Sbjct: 604 FLQHLLAHRDATRLKVTVDGLLNSVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 661

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
           + +                            +R   +  EG   L+ AD + IE R++A 
Sbjct: 662 TEAGRR-------------------------IRDGFVVGEGYADLMTADYSQIEMRIMAH 696

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ +   ++AF TGEDL+    +R+F+V   +VT + R   K M   L Y
Sbjct: 697 LSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYGLAY 746


>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
 gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
          Length = 928

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 9/124 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           +  R H    Q +T      ++DP+ LQ I         +R   IA E   +V AD + I
Sbjct: 651 KTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQI 709

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  G
Sbjct: 710 ELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY--G 767

Query: 445 AKAF 448
             AF
Sbjct: 768 MSAF 771


>gi|226323296|ref|ZP_03798814.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
 gi|225208486|gb|EEG90840.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
          Length = 162

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQG 443
           RV+A +A E W+ + F+ G D+Y T+ ++ F+V P +   +    R  GK+ +LALGY G
Sbjct: 35  RVIAHLARESWRAEVFKNGGDIYCTSASQMFHV-PVEKHGINGHLRQKGKIADLALGYGG 93

Query: 444 GAKAFQKMAS 453
              A + M +
Sbjct: 94  SVGALKAMGA 103


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 14/188 (7%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      ++DP+    P+++ +   +R   I  +G   V AD + +E R
Sbjct: 611 GRIHGTFNQTITATGRISSTDPNLQNIPMRMELGRLIRKAFIPQDGFVFVDADYSQVELR 670

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA ++ +     AF+   D++ TT +  F V   +VT  QR   K +   + Y  G  A
Sbjct: 671 VLAHLSDDSVMKNAFQNNIDIHSTTASEVFGVPIDEVTPLQRRHAKAVNFGIVY--GISA 728

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
           F  ++   G++    +  +      E++ D     +   +   + A E+ ++ T   R++
Sbjct: 729 F-GLSEDLGISRKEASDFI------EKYYDTYKSIKTYLDGQVKFAKENGYVKTMFGRIR 781

Query: 508 KAWRQKHS 515
                K S
Sbjct: 782 PIPELKSS 789


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H + +Q  T      +S+P+   I      S  +R   +   G  +  AD + I
Sbjct: 684 PDTQRVHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMAAADYSQI 743

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E   ++A++  ED++  T    F      V  D+R I K +   + Y  G
Sbjct: 744 ELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVFE--KEDVNSDERRIAKTINFGVIYGMG 801

Query: 445 AKAFQKMASTTGLNLNTFAHLVK 467
           +  F +   +TG++ N     +K
Sbjct: 802 SLKFSR---STGIDKNVANEFIK 821


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P     H   +Q +T      +S+P+ LQ I         +R   I  EG +   AD + 
Sbjct: 645 PETGHIHTSFNQTVTATGRLSSSNPN-LQNIPVRNEDGKEIRKAFIPDEGCEFFSADYSQ 703

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF   +D++  T A+ +      VT++QR+  K     + Y
Sbjct: 704 IELRIMAHLSGDPHMIEAFRANQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIY 761


>gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 950

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++G++  ++AF +G D +   
Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYV 758

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787


>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
 gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
          Length = 904

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 11/157 (7%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G S+         P    P   R H    Q         +SDP+ LQ I       
Sbjct: 605 LEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAG 663

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             VR   IA +GK L+ AD + IE R++A ++ +    +AF  GED++  T +  F V  
Sbjct: 664 RRVREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPL 722

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           A+V  +QR   K +   L Y  G   F  +AS  G+ 
Sbjct: 723 AEVGAEQRRAAKAINFGLIY--GMGVF-GLASNLGIT 756


>gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 334 RSHEELDQIITHLPTSITSDPDP-LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           R H +  QI    PT   S   P LQ I   +R     S+G  ++VAD + IE R+ A  
Sbjct: 110 RIHSQFRQI--GAPTGRMSSSKPNLQNIPPELRVLFRPSKGYSMIVADYSQIELRIAAEY 167

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             ++  + AF+ G+DL+  T +     +  ++TK++R + K +   L Y
Sbjct: 168 TNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQLAKAINFGLIY 216


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
          Length = 861

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS------DCVRSCVIASEGKKLVVAD 380
           +++ +  + H   +QI T      +S+P+ LQ IS        +R   +AS    L+ AD
Sbjct: 580 KHILKDGKIHTIFNQIQTQTGRLSSSEPN-LQNISVRDEEGKVIRKAFVASPQHTLMSAD 638

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA MA E+  ++AF  G D++  T  + F+V    V  + R   K +   + 
Sbjct: 639 YSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNMRRSAKTVNFGIV 698

Query: 441 Y 441
           Y
Sbjct: 699 Y 699


>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
 gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
          Length = 904

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q         +SDP+ LQ I         VR   IA +GK L+ AD + 
Sbjct: 627 PATGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAGRRVREAFIAEQGK-LLSADYSQ 684

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +    +AF  GED++  T +  F V  A+V  +QR   K +   L Y  
Sbjct: 685 IELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIY-- 742

Query: 444 GAKAFQKMASTTGLN 458
           G   F  +AS  G+ 
Sbjct: 743 GMGVF-GLASNLGIT 756


>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 907

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 630 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 688

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ +    +AF +GEDL+ T  A+ F+V  + V  + R   K M   L Y  G 
Sbjct: 689 LRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAY--GL 746

Query: 446 KAF 448
            AF
Sbjct: 747 SAF 749


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q +T      +S+P+   I I D     +R   I   G +   AD + I
Sbjct: 673 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQI 732

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  ++AF +G D++  T A+ + +    VT D R   K     + Y
Sbjct: 733 ELRIMAHLSEDKNMIEAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIY 789


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 10/126 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382
           P+  R H   +Q +       +++P+ LQ I        +  ++ +   E   L+ AD +
Sbjct: 660 PKTGRVHTSFNQAVAATGRLSSNNPN-LQNIPIRTERGREVRKAFIPRDENHILLSADYS 718

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ E+  L AF+ G D++  T AR + +A  +VT  QR   K +   + Y 
Sbjct: 719 QIELRIIADISKEENMLDAFKNGIDIHTATAARVYGIAIEEVTPTQRRNAKAVNFGIIY- 777

Query: 443 GGAKAF 448
            G  AF
Sbjct: 778 -GQSAF 782


>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 930

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H    Q +       ++DP+ LQ I         +R   IA +   +V AD + 
Sbjct: 652 PKTGRVHTSYHQAVAATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y  
Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINFGLIY-- 768

Query: 444 GAKAF 448
           G  AF
Sbjct: 769 GMSAF 773


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 10/131 (7%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q +T      +S+P+   I      S  +R   +  +  KL+ AD + IE R+
Sbjct: 696 RVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQKDWKLLSADYSQIELRI 755

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           L  ++GE+    A+   ED++  T    F      +  D+R IGK +   + Y  GA   
Sbjct: 756 LTHLSGEEVLKNAYLKNEDVHSLTAKILFE--KDAIDADERRIGKTINFGVIYGMGA--- 810

Query: 449 QKMASTTGLNL 459
           Q+ A +TG++L
Sbjct: 811 QRFARSTGVSL 821


>gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
 gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 880

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T      + TGR S      QN+P  + +  +            
Sbjct: 594 LEGLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEAGRQ------------ 640

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 641 -------------IRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLH 687

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               ++ F+V   +VT + R   K M   L Y  G  AF
Sbjct: 688 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLVY--GLSAF 724


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 32/157 (20%)

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           D R+  +    G + TGR S      QN+P  S S+ +                      
Sbjct: 625 DNRIHTSFLHTGTA-TGRLSSKNPNLQNIPTKSDSNIQ---------------------- 661

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   I  +G KLV  D + IE R+LA  + ++  ++AFE   D++  T  + F   
Sbjct: 662 ---IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDLDIHYQTAVKIFGEE 718

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            A   K++R I K +   L Y  G+K   K+  T G+
Sbjct: 719 NA---KEKRGIAKSINFGLLYGMGSK---KLGETLGI 749


>gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 835

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T      S TGR S      QN+P  + +  +            
Sbjct: 549 LEGLIKTIQPDGRIHTTFNQTVTS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 595

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 596 -------------IRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLH 642

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               ++ F+V   +VT + R   K M   L Y  G  AF
Sbjct: 643 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLVY--GLSAF 679


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 10/126 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382
           P+  R H   +Q +       +++P+ LQ I        +  R+ +   E   L+ AD +
Sbjct: 658 PKTGRVHTSYNQAVAATGRLSSNNPN-LQNIPIRTERGREVRRAFIPRDENHVLLSADYS 716

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ E+  L+AF  G D++  T A+ + VA  +VT  QR   K +   + Y 
Sbjct: 717 QIELRIIADISKEENMLQAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKAVNFGIIY- 775

Query: 443 GGAKAF 448
            G  AF
Sbjct: 776 -GQSAF 780


>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
          Length = 888

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 27/170 (15%)

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
           Q +  + +  +  ++ V  L T+ E    DGR+  T Q   A+ TGR S      QN+P 
Sbjct: 585 QHLLAYRDSTKLKQTVVGLLKTVAE----DGRIHTTYQQTVAA-TGRLSSLDPNLQNIPV 639

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + S   + +I         +DP     + D            +L+ AD + IE R++A 
Sbjct: 640 RTESGRRIREIFI-------ADPH----VDDA-----------RLLTADYSQIEMRIMAH 677

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++G+   ++AF+ GEDL+    ++ F V   +V    R+  K M   L Y
Sbjct: 678 LSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVY 727


>gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 955

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++G++  ++AF +G D +   
Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYV 763

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCVIASEGKKLVVADLA 382
           P   R H    Q +T      ++ P+ LQ I       S   ++ V  +E   L+ AD +
Sbjct: 650 PHTGRIHTTFMQAVTATGRLSSNQPN-LQNIPIRTPRGSQIRKAFVPRNEDYTLLSADYS 708

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ E   ++AF  G+D++ +T A+ F V    VTK+QR+  K +   + Y 
Sbjct: 709 QIELRIIAALSEEDHMIEAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYG 768

Query: 443 GGAKAFQKMASTT 455
             A    +  S +
Sbjct: 769 VSAIGLSQQTSLS 781


>gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
 gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
          Length = 886

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 36/246 (14%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A TL Q+ +    KL +ELE   Y        L   ++L   LF + GL +   T+T   
Sbjct: 507 ASTLIQLQNEFAVKL-KELEDKIYEQAGERFNLNSPKQLGHILFEKLGLPVLKKTKTGYS 565

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  T
Sbjct: 566 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 622

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +   +++ +        + S+PD        + SC         
Sbjct: 623 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 661

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435
              D + +E RVLA ++G+    +AF+TG D++  T  + F++ +P QVT   R   K +
Sbjct: 662 ---DYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAV 718

Query: 436 ELALGY 441
              + Y
Sbjct: 719 NFGIVY 724


>gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
 gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
          Length = 951

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++A N +D R+  T +   A+ TGR S      QN+P  +    E           
Sbjct: 662 VQTLIDATNKADERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAVGRE----------- 709

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +RS  +  EG + L+  D + +E R++A ++G++  ++AF +G D 
Sbjct: 710 --------------IRSVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADF 755

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  + V   Q+T DQR+  K M   L Y
Sbjct: 756 HKYVASMVYGVPVDQITGDQRSHVKAMSYGLAY 788


>gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
 gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
          Length = 909

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q IT      +++P+    P+++ +   +R   +  EG   + AD + IE RV
Sbjct: 635 RIHGKFNQTITATGRISSTEPNLQNIPIRMELGRAIRKVFLPEEGYIFLDADYSQIELRV 694

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ ++  + A+E  +D++  T +  F +   +VT  QR   K +   + Y  G  AF
Sbjct: 695 LAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRRDAKAVNFGIIY--GLSAF 752


>gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1]
          Length = 850

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +  V   EG   V AD + IE RVLA M+ E   ++AF  G D++  T +  F++AP  V
Sbjct: 617 QGLVPVREGNVFVAADYSQIELRVLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFV 676

Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448
           T + R + K++   L Y  G  AF
Sbjct: 677 TPELRRVAKMINFGLLY--GMSAF 698


>gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 882

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDP-LQII------SDCVRSCVIASEG-KKLVVADLA 382
           R  R H    Q  T   T   S  DP LQ I         +R+  +  EG + ++ AD +
Sbjct: 605 RDGRIHTTFQQ--TAAATGRLSSTDPNLQNIHARTAEGRSIRAAFVPGEGYESIMTADYS 662

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G+   ++AF  G DL+    +R + V   +VT D R+  K M   L Y 
Sbjct: 663 QIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVPEEKVTADDRSHIKAMSYGLAYG 722

Query: 443 GGAKAFQK 450
             A    K
Sbjct: 723 LSAYGLSK 730


>gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington]
 gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I
 gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
 gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 872

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G KL+ AD + IE R+L+ +A      +AF   ED++  T  + FN+   +
Sbjct: 635 IRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQIFNLQKHE 694

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +T + R   K +   + Y  G  AF
Sbjct: 695 LTSEHRRKAKAINFGIIY--GISAF 717


>gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 888

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 611 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIE 669

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ +    +AF +GEDL+ T  A+ F+V  + V  + R   K M   L Y  G 
Sbjct: 670 LRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAY--GL 727

Query: 446 KAF 448
            AF
Sbjct: 728 SAF 730


>gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole]
          Length = 609

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAW 391
           R H  ++ +        TS+P    + S    VR C +A  G+ +   D    E RVLA 
Sbjct: 343 RVHPGINPLQARTGRMSTSNPSAQNLPSGDWMVRRCFLADPGQIIASVDYRAQELRVLAA 402

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G+Q  L+AFE   DL+  T         A      R IGK+    + Y GGA    K+
Sbjct: 403 LSGDQTMLRAFEEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAG---KL 450

Query: 452 ASTTGLNL 459
           A+  G+  
Sbjct: 451 ATNAGITF 458


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 12/132 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I      S  +R   +   G  L+ AD + IE 
Sbjct: 690 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQAGWTLLSADYSQIEL 748

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+ +G+D++  T AR   +   +V+ D+R +GK +   + Y  GA 
Sbjct: 749 RILTHLSGEEVLQEAYRSGDDVHALT-ARLL-LDKDEVSADERRLGKTINFGVIYGMGA- 805

Query: 447 AFQKMASTTGLN 458
             Q+ A  TG++
Sbjct: 806 --QRFARETGVS 815


>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
          Length = 897

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 14/126 (11%)

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P       E  + I H   +    P P+ + S  +       E + 
Sbjct: 623 TGRLSSTDPNLQNIP----VRTEAGRQIRH---AFVVAPGPVAVGSGNI-------EFES 668

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++ ++  ++AF TGEDL+    +R+F V   QV    R+  K M
Sbjct: 669 LMTADYSQIEMRIMAHLSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAM 728

Query: 436 ELALGY 441
              L Y
Sbjct: 729 SYGLAY 734


>gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
 gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
          Length = 887

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 35/230 (15%)

Query: 220 QELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA 273
           +ELE   Y        L   ++L   LF + GL +   T+T   T   VL   K  +P  
Sbjct: 523 KELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIV 582

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRP 332
            ++ + R  A   +   +  L++ +  DGR+    LQ L A  TGR S      QN+P  
Sbjct: 583 SEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--TGRLSSVDPNLQNIP-- 637

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +R+ EE  QI       + S+PD        + SC            D + +E RVLA +
Sbjct: 638 TRT-EEGKQIRKAF---VPSEPDG------YIFSC------------DYSQVELRVLAHV 675

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
           +G+Q   +AF+TG D++  T  + F++ +P  VT   R   K +   + Y
Sbjct: 676 SGDQNMQEAFKTGYDIHSHTAMKIFHLDSPKDVTPLMRRHAKAVNFGIVY 725


>gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
 gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
          Length = 997

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 115/312 (36%), Gaps = 88/312 (28%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA +G +LV AD + IE RVLA +A      +AF  G D++  T +  FNV    
Sbjct: 754 IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 813

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +  + R   K +   + Y  G  AF                L    S P   E+A N+ +
Sbjct: 814 MPSEVRRRAKAINFGIIY--GISAF---------------GLANQLSIPR--EEASNYIK 854

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              E  P   I D    T      KA+ ++H  V  ++                      
Sbjct: 855 KYFERFP--GIRDYIEET------KAYAREHGFVETIF---------------------- 884

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                                GR + Y D+ ++    N + R      +   +L     Q
Sbjct: 885 ---------------------GRRIHYPDIRSS----NPSIRAFNERASINARL-----Q 914

Query: 604 AVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSN 654
             + DI+   M      +   K    ++L VHDE++ ET D + E    ++ H+M   + 
Sbjct: 915 GTAADIIRRAMVRMDEALEKAKLSARMLLQVHDELIFETVDAEVEATIPIVRHVMENAAM 974

Query: 655 PSWAKGLPLKAE 666
           P+ +  +PL  +
Sbjct: 975 PAVSMSVPLHVD 986


>gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
 gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
          Length = 932

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EGK LV  D + IE R+LA +A      +AFE G+D++  T +  F+V   Q
Sbjct: 692 IREAFVAPEGKVLVALDYSQIELRILAHIAQIDALKEAFERGDDIHAMTASEMFDVPMDQ 751

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 752 MTPEIRRNAKAINFGVIY 769


>gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168]
 gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A  G +L+ AD + IE  +LA ++G+     AF  G D++  T A  F V P  
Sbjct: 687 IRLAFTAEPGCQLISADYSQIELVILAHLSGDPNLCAAFSGGTDVHRATAALIFGVQPDA 746

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           VT D R   K +   + Y  G  AF ++A   G+     A  ++
Sbjct: 747 VTPDMRRTAKTINFGVMY--GMSAF-RLAGALGIPRTQAAEFIE 787


>gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus]
 gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus]
          Length = 605

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 153/677 (22%), Positives = 235/677 (34%), Gaps = 185/677 (27%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           D+   G+ +  E  CV  FA+ +DD  +   L D V + +  Q   +  E  + TI+ HN
Sbjct: 40  DIETPGLDRAFEINCVT-FAWRWDDGSIHSVLLDPVGNTLHRQACIDLYERAE-TIILHN 97

Query: 73  SYFERTVLK--ACFNL--DIPIHRWICTLVLARSNGLPSALKAVGEALK------LSSQK 122
           + F+   L+    F    +I I++ + TL+LAR + LP     V ++L       L    
Sbjct: 98  APFDIPALRHAGLFGTSPNIAINKVVDTLLLARFS-LPDV--TVSKSLTALSIRYLGLSD 154

Query: 123 MEEGKELIARFCKGETHECLYDR---NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            ++G ++       +T +  Y+      P +R            D   T     +LEPL 
Sbjct: 155 FKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVG-------AMADTIATL----KLEPLL 203

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK- 238
                 W LD    D G   D      L     V R  L +  + L       +R  E+ 
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263

Query: 239 ---------LKTWLFLETGL--------HLEDLTETTCQ--RVLSSNKKLTPQAIQVFNN 279
                    L     LE G         +L ++ +      R  +   K T   +  F++
Sbjct: 264 DAERIQHEALLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGFDH 323

Query: 280 ------RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
                 R  A    VL   T VE   +  GR    +  LGAS TGR +  +   Q  P+ 
Sbjct: 324 PLTIAQRKLAEVDKVLGYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPELQQFPKD 383

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +R                                 +I  +G+ L   D + IE   +A M
Sbjct: 384 ARP--------------------------------IITDDGQGLTSIDWSQIEPVTMANM 411

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           AG+   L  FE GEDLY     RS  +    +TK+ R I KV+ LA  Y           
Sbjct: 412 AGDVGFLIPFEAGEDLY-EPIQRSCGL---PMTKEGRDIAKVVLLATMY----------- 456

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+ +N  A  +K        E A+   R M    PE A                W  
Sbjct: 457 ---GMGVNGLALKIKHTV-----ESAQQIRRQMLAAMPESA---------------KWMA 493

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +   +++             + G+ I A  R                 +LP     V+R 
Sbjct: 494 RVQGIAD-------------QYGRIITAAGR-----------------ILPVDDGGVFRA 523

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHD 630
           V                 YT         VQ  + D+LA  ++   +AG    + L +HD
Sbjct: 524 V----------------NYT---------VQGSAYDVLASTIVRMERAGLGDHLQLAMHD 558

Query: 631 EIVCETPDTDEFNASML 647
           E++ +T  +DE    ML
Sbjct: 559 ELIVDTEVSDEVQQIML 575


>gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
 gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
          Length = 886

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 29/187 (15%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASR 315
           +T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  
Sbjct: 565 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQRDGRVHTRYLQTLTA-- 621

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +   +++ +        + S+PD        + SC        
Sbjct: 622 TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPD------GYIFSC-------- 661

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
               D + +E RVLA ++G+Q   +AF+TG D++  T  R F++ +P +VT   R   K 
Sbjct: 662 ----DYSQVELRVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKA 717

Query: 435 MELALGY 441
           +   + Y
Sbjct: 718 VNFGIVY 724


>gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 923

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P     H   +Q IT      +S+P+ LQ I         +R   I   G +   AD + 
Sbjct: 645 PETGHIHTSFNQTITTTGRLSSSNPN-LQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQ 703

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF  G D++  T A+ +     +VT+++R+  K     + Y
Sbjct: 704 IELRIMAHLSGDPHMIEAFREGHDIHAATAAKIYKKPLEEVTREERSKAKTANFGIIY 761


>gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 112/290 (38%), Gaps = 88/290 (30%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   + S+   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  A+
Sbjct: 637 IRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAE 696

Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R   K +   + Y  G   F  +A   G+                  +DA+N+ 
Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E +P        I T  E + +  R K              F +T       ++ +
Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +              + R+   R     R+ +N+                   +
Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP--DTDEFNA 644
           Q  + DIL   M+N  KA         ++L VHDEI+ + P  + DE  A
Sbjct: 798 QGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKA 847


>gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
 gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
          Length = 907

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 37/197 (18%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQFLG 312
           +T + VL   +KL    +++ +  +   + A LK NT V+A+    +S  RL  T   +G
Sbjct: 586 STDEEVL---EKLKNDGVEIASYILEYRKYAKLK-NTYVDALPKLADSRDRLHTTFNQIG 641

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P   ++ E +                        +R   IA  
Sbjct: 642 TT-TGRLSSSNPNLQNIP--VKTDEGMK-----------------------IRQGFIADN 675

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAI 431
           G  L+  D + IE RVLA ++ ++  + A++  EDL+  T  + F +    +V+++QR I
Sbjct: 676 GNVLMGIDYSQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIFELEDGEEVSREQRII 735

Query: 432 GKVMELALGYQGGAKAF 448
            K +  ++ Y  G  AF
Sbjct: 736 AKTINFSIIY--GKTAF 750


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 117/294 (39%), Gaps = 41/294 (13%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ---ELESLTYGLVSSSRCLEK 238
           EQ L  +  T+   G  +D A  H L+Q ++++  KL +   EL    + L S     ++
Sbjct: 561 EQPLESVLATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQATELAGEKFNLGSP----KQ 616

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   LF + GL  +                        ++ +++   S        ++ +
Sbjct: 617 LSYILFEKLGLSTK------------------------YSRKIQTGYSTDAATLEKLQEV 652

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD--- 355
           +  G +    ++   S+         P    P   R H + +Q  T      +S+P+   
Sbjct: 653 DETGFVNAITEYRTLSKLKSTYVDALPALVRPDTQRVHTDFNQTATSTGRLSSSNPNLQN 712

Query: 356 -PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
            P++   S  +R   +   G  +  AD + IE R+LA ++ E   ++A++  ED++  T 
Sbjct: 713 IPIRTAFSRQIRKAFLPKSGWLMAAADYSQIELRILAHLSQEPLLVQAYQQNEDIHTVTA 772

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
              F      +  D+R I K +   + Y  G+  F +   +TG++ N     +K
Sbjct: 773 KLVFE--KDDINSDERRIAKTINFGVIYGMGSLKFSR---STGIDKNVANEFIK 821


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 518 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 577

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 578 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 637

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 638 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 693

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 694 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 728

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 729 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 786

Query: 445 AKAF 448
             AF
Sbjct: 787 MSAF 790


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 112/290 (38%), Gaps = 88/290 (30%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   + S+   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  A+
Sbjct: 637 IRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAE 696

Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R   K +   + Y  G   F  +A   G+                  +DA+N+ 
Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E +P        I T  E + +  R K              F +T       ++ +
Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +              + R+   R     R+ +N+                   +
Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP--DTDEFNA 644
           Q  + DIL   M+N  KA         ++L VHDEI+ + P  + DE  A
Sbjct: 798 QGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKA 847


>gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 27/143 (18%)

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           SDGR+  T +   A+ TGR S      QN+P                      DP   +I
Sbjct: 13  SDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP--------------------NRDPAGREI 51

Query: 360 ISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G D +    +  + 
Sbjct: 52  -----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYG 106

Query: 419 VAPAQVTKDQRAIGKVMELALGY 441
           V   ++T DQR+  K M   L Y
Sbjct: 107 VPVDEITPDQRSHVKAMSYGLAY 129


>gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 242

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F+V   
Sbjct: 1   IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60

Query: 423 QVTKDQRAIGKVMELALGY 441
           +VT + R   K M   L Y
Sbjct: 61  EVTPELRRRVKAMSYGLAY 79


>gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17]
 gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17]
          Length = 943

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 41/218 (18%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLK----- 290
           ++L+  LF + GL  +   +T      ++   L   A++ V N R     +A+L+     
Sbjct: 591 KQLQAVLFDDMGL--KPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETN 648

Query: 291 -----LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                + +L++A+N  DGR+  T +   A+ TGR S      QN+P  +    E      
Sbjct: 649 KLKQIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGRE------ 701

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +RS  +  EG + L+ +D + +E R++A ++G+   ++AF 
Sbjct: 702 -------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFR 742

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +G D +    +  + +    +T DQR   K M   L Y
Sbjct: 743 SGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 780


>gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
 gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
          Length = 955

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++G++  ++AF +G D +   
Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYV 763

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +RS V A +    L+ AD + IE RVLA +  ++  + AF  GED++  T A  F V   
Sbjct: 665 IRSTVKAQKDDYVLLSADYSQIELRVLAHLTNDETLINAFNNGEDIHALTAAAIFGVKID 724

Query: 423 QVTKDQRAIGKVMELALGY 441
            V  + R +GKV+  +L Y
Sbjct: 725 DVDYNMRRVGKVVNFSLVY 743


>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
          Length = 875

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +T + R   K +   + Y  G  AF
Sbjct: 698 LTSEHRRKAKAINFGIIY--GISAF 720


>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
 gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
          Length = 883

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCV-IASEGKKLV 377
            P +  P+  R H   +Q +         DP+  QI     +   VR       +G   +
Sbjct: 599 LPKEINPKTGRIHPTFNQSVAATGRLSCQDPNLQQIPIRTPLGREVRKAFRPEKQGWSYL 658

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA  + +   + AFE  ED++  T A   N+   QVTK+QR   K +  
Sbjct: 659 SADYSQIELRLLAHFSEDPTLISAFENNEDIHTHTAATVLNIPLEQVTKEQRRQAKAVNF 718

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            + Y  G +A+  ++   G++L   +  +KT
Sbjct: 719 GILY--GQQAW-GLSKELGISLEEASAFIKT 746


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q +T      +S+P+   I I D     +R   I   G +   AD + I
Sbjct: 673 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQI 732

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  + AF +G D++  T A+ + +    VT D R   K     + Y
Sbjct: 733 ELRIMAHLSEDKNMIDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIY 789


>gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24]
 gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24]
          Length = 955

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           VR   + SEG + L+ AD + IE R++A ++G+   ++A+  GEDL+    +  F+V   
Sbjct: 714 VRGIFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTD 773

Query: 423 QVTKDQRAIGKVMELALGY 441
           QVT   R+  K M   L Y
Sbjct: 774 QVTSAMRSKVKAMSYGLAY 792


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382
           P+  + H   +Q +T      +++P+ LQ I           R+ V +  G KL  AD +
Sbjct: 599 PKTGKIHTIFNQAVTQTGRLSSTEPN-LQNIPVRLEEGRKIRRAFVPSKPGSKLFAADYS 657

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE RVLA ++ ++  + AF+ G D++  T +  F V   +VT + R   K +   + Y
Sbjct: 658 QIELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAVNFGIVY 716


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 580

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789

Query: 445 AKAF 448
             AF
Sbjct: 790 MSAF 793


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ + +    H   +Q+ T      + +P+ LQ +    R  ++A E   ++  D + IE
Sbjct: 431 PQLIKKDGLLHGSFNQVATVTGRFASREPN-LQNLPPRARRLIVAPEDSLILGVDFSQIE 489

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGY 441
            RVLA M+G+    + +  G+DLY T  +R F V+  +   D   R + KV  LA+ Y
Sbjct: 490 PRVLAHMSGDPHLQEPYLKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMY 547


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379
           P+ L    R H   +Q  T      +SDP+ LQ I         +R   IA +   +V A
Sbjct: 613 PKMLDVNGRVHTSYNQTGTVTGRLSSSDPN-LQNIPIKSPEGRKIRQAFIAEQEFCVVAA 671

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++ ++  LKAF  G D++  T A    ++   VT +QR   K +   L
Sbjct: 672 DYSQIELRIMAHLSKDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGL 731

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 732 IY--GMSAF 738


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGIE 385
           R  R H   +Q +T      +S+P+   I I D     +R   I  +G +   AD + IE
Sbjct: 676 RTGRIHTSFNQAVTSTGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIE 735

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            R++A ++ ++  + AF +G D++  T A+ + +   +VT D R   K     + Y
Sbjct: 736 LRIMAHLSEDKNMIDAFLSGHDIHAATAAKIYKIDIEEVTSDMRRKAKTANFGIIY 791


>gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010]
 gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010]
          Length = 944

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 41/218 (18%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLK----- 290
           ++L+  LF + GL  +   +T      ++   L   A++ V N R     +A+L+     
Sbjct: 592 KQLQAVLFDDMGL--KPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETN 649

Query: 291 -----LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                + +L++A+N  DGR+  T +   A+ TGR S      QN+P  +    E      
Sbjct: 650 KLKQIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGRE------ 702

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +RS  +  EG + L+ +D + +E R++A ++G+   ++AF 
Sbjct: 703 -------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFR 743

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +G D +    +  + +    +T DQR   K M   L Y
Sbjct: 744 SGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 781


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q +T      +S+P+   I I D     +R   I   G +   AD + I
Sbjct: 680 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQI 739

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  + AF +G D++  T A+ + +    VT D R   K     + Y
Sbjct: 740 ELRIMAHLSEDKNMIDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIY 796


>gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec]
 gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec]
          Length = 911

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q+I       ++DP+ LQ I         +R   +  +G + L+ AD + IE
Sbjct: 634 GRIHTTFNQMIAATGRLSSTDPN-LQNIPIRTPQGRQIRQAFVVGQGYETLLTADYSQIE 692

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G+   ++AF +GEDL+    A++F +  ++V  + R   K M   L Y  G 
Sbjct: 693 MRLMAHLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLAY--GL 750

Query: 446 KAF 448
            AF
Sbjct: 751 SAF 753


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 117/310 (37%), Gaps = 45/310 (14%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDV 201
           A  +   Y   D  +T  +F R     +++    Q L++L+         +   G  +D 
Sbjct: 515 AMDVASHYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574

Query: 202 ALAHTLNQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
                L+   D +   L  E E +    + L S  +  E L   L +  G   +     T
Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            + VLS   K+    I V       S+      +TL  A +  GR+  T      + TGR
Sbjct: 635 SEAVLS---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGR 690

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            S      QN+P                   I +D   L      +R   IA +G+ ++ 
Sbjct: 691 LSSSDPNLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILA 725

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   
Sbjct: 726 ADYSQIELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFG 785

Query: 439 LGYQGGAKAF 448
           L Y  G  AF
Sbjct: 786 LLY--GMSAF 793


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 518 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 577

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 578 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 637

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 638 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 693

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 694 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 728

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 729 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 786

Query: 445 AKAF 448
             AF
Sbjct: 787 MSAF 790


>gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
          Length = 882

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 37/237 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   LFL+  L     T+T     +   + L+ Q  Q+  N +   + A LK NT V+
Sbjct: 538 KQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYRKLAKLK-NTYVD 596

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +                           P+ +    R H    QI T      +SDP+ 
Sbjct: 597 PI---------------------------PKMVKFGDRIHTCYHQIGTVTGRLSSSDPNL 629

Query: 357 LQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   IA +G KL+  D + +E RVLA ++ ++  +KA++  +DL+  
Sbjct: 630 QNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSV 689

Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           T  + F +    +V+++QR + K++  ++ Y  G   F  +A   G+++   A  +K
Sbjct: 690 TAKKIFELEEKEEVSREQRTMAKIINFSIIY--GKTPF-GLAKELGISVKDAAEYIK 743


>gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331]
          Length = 903

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 626 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIE 684

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ +   ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y  G 
Sbjct: 685 LRVMAHLSEDAGLIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAY--GL 742

Query: 446 KAF 448
            AF
Sbjct: 743 SAF 745


>gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50]
          Length = 263

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    
Sbjct: 24  IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 83

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 84  VTSEQRRSAKAINFGLIY--GMSAF 106


>gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
 gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
          Length = 982

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIASEG-KKLVVADLA 382
           P   R H   +Q +       + DP+ LQ I +       +RS  +  EG + L+  D +
Sbjct: 702 PADERIHTTFEQTVAATGRLSSVDPN-LQNIPNRNAAGREIRSAFVPGEGFESLMSCDYS 760

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +E R++A ++G++  ++AF++G D +    +    V   Q+T DQR+  K M   L Y
Sbjct: 761 QVELRIMAHLSGDESLIEAFKSGADFHKYVASLVHGVPVDQITPDQRSHVKAMSYGLAY 819


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 580

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789

Query: 445 AKAF 448
             AF
Sbjct: 790 MSAF 793


>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
 gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
          Length = 875

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +T + R   K +   + Y   A    K  + T
Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 518 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 577

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 578 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 637

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 638 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 693

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 694 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 728

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 729 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 786

Query: 445 AKAF 448
             AF
Sbjct: 787 MSAF 790


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  L+ AD + IE R+LA +A       AF  GED++  T A  F +AP +
Sbjct: 729 IRRAFVAEPGHVLLAADYSQIELRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDK 788

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           V K+ R   K +   + Y  G  AF  +A+  G+ 
Sbjct: 789 VDKEARRRAKTINFGIIY--GMSAF-GLAARLGIG 820


>gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
 gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
          Length = 903

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 29/180 (16%)

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           T   + V   R R      + +  L++ + +DGR+  T     A+ TGR S      QN+
Sbjct: 594 TEHELPVLMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNI 652

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388
           P   R+ E                          +R   +  EG + L+ AD + IE RV
Sbjct: 653 P--VRTDE-----------------------GRAIRRGFVVGEGFETLMTADYSQIELRV 687

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ +   ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y  G  AF
Sbjct: 688 MAHLSEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAY--GLSAF 745


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 518 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 577

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 578 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 637

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 638 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 693

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 694 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 728

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 729 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 786

Query: 445 AKAF 448
             AF
Sbjct: 787 MSAF 790


>gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
          Length = 878

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA-DLA 382
           P+  R H    Q +T      ++DP+ LQ I      S  +R   +   G  L+++ D +
Sbjct: 599 PKTGRIHTHFQQTVTVTGRLSSTDPN-LQNIPARTEESRQIRRIFVPGAGYDLLMSCDYS 657

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +E R+LA +A ++  L+AF  G+D++  T A  F V   +VT   R+  K +   + Y
Sbjct: 658 QVELRILACIAQDELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRSRAKAVNFGIVY 716


>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
 gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
          Length = 875

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +T + R   K +   + Y   A    K  + T
Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 629 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIE 687

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ +   ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y  G 
Sbjct: 688 LRVMAHLSEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAY--GL 745

Query: 446 KAF 448
            AF
Sbjct: 746 SAF 748


>gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE]
 gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE]
          Length = 903

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 626 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIE 684

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ +   ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y  G 
Sbjct: 685 LRVMAHLSEDAGLIEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAY--GL 742

Query: 446 KAF 448
            AF
Sbjct: 743 SAF 745


>gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614]
 gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614]
          Length = 889

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +   G + L+ AD + IE R++A ++ +   ++AF++G D +  T AR F+V   
Sbjct: 648 IREGFVVGPGYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFHSITAARVFDVPAD 707

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
            VT + RA  K M   L Y  G  AF
Sbjct: 708 DVTVEMRAKIKAMNYGLAY--GLSAF 731


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLD-------QTINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQL 580

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789

Query: 445 AKAF 448
             AF
Sbjct: 790 MSAF 793


>gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
          Length = 948

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 11/157 (7%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G S+         P    P   R H    Q         +SDP+ LQ I       
Sbjct: 649 LEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAG 707

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             VR   IA +G  L+ AD + IE R++A ++ +    +AF  GED++  T +  F VA 
Sbjct: 708 RRVREAFIAEQGL-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVAL 766

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           A V+ +QR   K +   L Y  G   F  +AS  G+ 
Sbjct: 767 ADVSSEQRRAAKAINFGLIY--GMGVF-GLASNLGIT 800


>gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
 gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
          Length = 907

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +++P+    P++I +   +R   + ++G   + AD + IE R
Sbjct: 632 GRIHTSFNQTITVTGRLSSTEPNLQNIPMRIELGRLIRKAFLPAKGCVFMDADYSQIELR 691

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA M+G++  ++A+   +D++  T ++ F++   +VT  QR   K +   + Y
Sbjct: 692 VLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVY 745


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A +G+ L+ AD + IE  +LA ++ +Q  ++AF TG D++  T +  F V    
Sbjct: 697 IREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNTGIDVHAKTASLIFAVDIKD 756

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           V++D R I K +   + Y  G  AF+  +S
Sbjct: 757 VSQDMRRIAKTINFGVMY--GMSAFRLASS 784


>gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
          Length = 921

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 684 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +T + R   K +   + Y   A    K  + T
Sbjct: 744 LTNEHRRKAKAINFGIIYGISAFGLAKQLNVT 775


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 580

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789

Query: 445 AKAF 448
             AF
Sbjct: 790 MSAF 793


>gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 866

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R C+I S+ G     AD + IE RVLA ++G+   ++ F +  D++  T A  F +   
Sbjct: 630 IRECLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHTETAAMIFGLPAD 689

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
            VTK+ R   K +   L Y  G   F  +AS  G + NT
Sbjct: 690 AVTKELRRSAKTVSFGLIY--GMSVF-GLASRLGTDRNT 725


>gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
          Length = 943

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 41/218 (18%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLK----- 290
           ++L+  LF + GL  +   +T      ++   L   A++ V N R     +A+L+     
Sbjct: 591 KQLQAVLFDDMGL--KPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETN 648

Query: 291 -----LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                + +L++A+N  DGR+  T +   A+ TGR S      QN+P  +    E      
Sbjct: 649 KLKQIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGRE------ 701

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +RS  +  EG + L+ +D + +E R++A ++G+   ++AF 
Sbjct: 702 -------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFR 742

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +G D +    +  + +    +T DQR   K M   L Y
Sbjct: 743 SGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 780


>gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672]
          Length = 791

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           S GR+    +  G + TGR S      QN+P+      E                     
Sbjct: 514 STGRIHTQFKQTGTA-TGRLSSVNPNLQNIPQKGELGSE--------------------- 551

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +RS  ++ EG   +  D + IE R+LA ++ ++    AFE   D++  T  + F +
Sbjct: 552 ----IRSAFVSKEGYSFLSIDYSQIELRILAHISDDENLKIAFEQDFDIHTMTAMKVFGL 607

Query: 420 APAQVTKDQRAIGKVMELALGY 441
             +++T+D R I K +   + Y
Sbjct: 608 LESEITRDIRRIAKAVNFGIIY 629


>gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
          Length = 975

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 13/145 (8%)

Query: 331 RPSRSHEELDQIITHL-----PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           R S  H  +  I  H      P S   + D L I     R+  ++SEG   + AD + IE
Sbjct: 566 RLSAKHPNIQGISKHPIQITKPQSFKGEEDELSI---SPRTAFVSSEGYTFLAADFSQIE 622

Query: 386 ARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            R+LA ++G+   LK F+  E  D++ T  ++  +V+P +VT   R   K +  A+ Y  
Sbjct: 623 LRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYGA 682

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKT 468
           G    +++A+  G+ +   A  +++
Sbjct: 683 GK---ERLAACLGVPVREAARFLES 704


>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
 gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
          Length = 932

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 9/125 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q         +SDP+ LQ I         VR   +A  G  +V AD + 
Sbjct: 654 PDTGRVHTHYSQASVVTGRLASSDPN-LQNIPIRTDEGRRVREAFVAPAGSCIVSADYSQ 712

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+   + AF  G D++  T +  F V    V+ +QR   K +   L Y  
Sbjct: 713 IELRIMAHLSGDAGLIAAFREGRDIHRATASEVFGVPLEAVSAEQRRYAKTINFGLIY-- 770

Query: 444 GAKAF 448
           G  AF
Sbjct: 771 GMSAF 775


>gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss]
 gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14]
 gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg]
          Length = 866

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           E    + AD + +E R LA ++ ++   +AF++GED++  T ++ FNV   QVT+ QR  
Sbjct: 637 ENDYFLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQ 696

Query: 432 GKVMELALGYQGGAKAFQK 450
            K +   L Y   A    K
Sbjct: 697 AKAVNFGLAYGQQAYGLSK 715


>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
 gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
 gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
          Length = 875

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +T + R   K +   + Y   A    K  + T
Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 580

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789

Query: 445 AKAF 448
             AF
Sbjct: 790 MSAF 793


>gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
 gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
          Length = 903

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 27/139 (19%)

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           RL  T    GA+ TGR S      QN+P  S      D+ I                   
Sbjct: 630 RLHTTFNQTGAA-TGRLSSSNPNLQNIPVKS------DEGIK------------------ 664

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   I+ +G  L+  D + IE RVLA ++ ++  +KA+  G DL+  T  + F++   
Sbjct: 665 -IRRGFISDKGNTLLAIDYSQIELRVLAELSKDETLIKAYSDGLDLHDLTAKKIFDI-DT 722

Query: 423 QVTKDQRAIGKVMELALGY 441
            VT+ QR + K++  ++ Y
Sbjct: 723 DVTRSQRTMAKIVNFSIIY 741


>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 913

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 32/170 (18%)

Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
           F   + A R A    + ++ L+ ++ SDGR+  T  Q + A  TGR S      QN+P  
Sbjct: 608 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 665

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
           + +                             R   +  +G  +L+ AD + IE R++A 
Sbjct: 666 TEAGRR-------------------------TRDAFVVGDGYAELMTADYSQIEMRIMAH 700

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           ++ +   ++AF TGEDL+    +R+F V   +VT + R   K M   L Y
Sbjct: 701 LSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAY 750


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 29/146 (19%)

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           E   SDGRL G      A+ TGR S      QN+P    +  EL  +             
Sbjct: 551 EGRGSDGRLHGQFNQTVAA-TGRLSSSRPNLQNIP----ARTELGLL------------- 592

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   VR C +A +G  L+ AD + IE R+LA  +G+ +  +AF  GED++  T A 
Sbjct: 593 --------VRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAAL 644

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGY 441
            F      VT + R   K +   + Y
Sbjct: 645 LFG---EPVTSESRRRAKTINFGILY 667


>gi|238899051|ref|YP_002924733.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466811|gb|ACQ68585.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 130

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           R +  +++  K   L   + +D R  G L + GAS TGRWSG  F PQNLPRPS
Sbjct: 41  RQQLGKTSTAKYAALKALVMNDHRAHGLLMYHGAS-TGRWSGRHFQPQNLPRPS 93


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLD-------QTINDRGYCVDVALAHTL 207
           +Y   D  +T  +F R     +++    Q L++L+         +   G  +D      L
Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQL 580

Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           +   D +   L  E E +    + L S  +  E L   L +  G   +     T + VLS
Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K+    I V       S+      +TL  A +  GR+  T      + TGR S    
Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P                   I +D   L      +R   IA +G+ ++ AD + I
Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  +G++  ++AF    D++  T A       ++VT  +R   K +   L Y  G
Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789

Query: 445 AKAF 448
             AF
Sbjct: 790 MSAF 793


>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
 gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
          Length = 905

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 11/156 (7%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361
           L++ G S+         P    P   R H    Q         +SDP+ LQ I       
Sbjct: 606 LEYRGLSKLKSTYTDKLPRMINPNTGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAG 664

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             VR   IA +G  L+ AD + IE R++A ++ +    +AFE GED++  T +  F V+ 
Sbjct: 665 RRVREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQRAFEAGEDIHRATASEVFGVSL 723

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             V+ +QR   K +   L Y  G   F  +AS  G+
Sbjct: 724 EDVSTEQRRAAKAINFGLIY--GMGVF-GLASNLGI 756


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 108/281 (38%), Gaps = 86/281 (30%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   + S+   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  A+
Sbjct: 637 IRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAE 696

Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R   K +   + Y  G   F  +A   G+                  +DA+N+ 
Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E +P        I T  E + +  R K              F +T       ++ +
Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +              + R+   R     R+ +N+                   +
Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
           Q  + DIL   M+N  KA         ++L VHDEI+ + P
Sbjct: 798 QGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILDVP 838


>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
 gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
          Length = 872

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 635 IRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTACQIFNLQKHE 694

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +T + R   K +   + Y  G  AF
Sbjct: 695 LTSEHRRKAKAINFGIIY--GISAF 717


>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
 gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
 gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
          Length = 875

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +T + R   K +   + Y   A    K  + T
Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   IA +G+K++ AD + IE R++A  A +   ++AF+ G D++  T A     A  
Sbjct: 699 LIRGAFIAPKGRKVLSADYSQIELRLMAHFANDPVLIRAFQEGHDIHRATAAEILGKAFD 758

Query: 423 QVTKDQRAIGKVMELALGY 441
            VT ++R   K +   L Y
Sbjct: 759 DVTSEERRQAKAVNFGLLY 777


>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
 gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
          Length = 875

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +T + R   K +   + Y   A    K  + T
Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729


>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
 gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
 gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
          Length = 875

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +T + R   K +   + Y   A    K  + T
Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729


>gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2]
 gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2]
          Length = 935

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A +G++LV  D + IE R+LA +A      +AF  G+D++  T +  FNV   Q
Sbjct: 695 IREAFVAPKGRRLVSLDYSQIELRILAHVADIPALKQAFREGQDIHAMTASEMFNVPLDQ 754

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 755 MTPDIRRQAKAINFGVIY 772


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 27/155 (17%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   ++ DGR+         + TGR S      QN+P       E+ ++           
Sbjct: 672 LKNVIDEDGRIHSNFN-QTVTTTGRLSSTDPNLQNIPIRHELGREIRKVFI--------- 721

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
             PLQ             EG  LV  D + IE RVLA +AG++  + AF+   D++  T 
Sbjct: 722 --PLQ-------------EGDTLVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIHTKTA 766

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +  F V    VT   R+  K +   + Y  G  AF
Sbjct: 767 SEVFKVPVEDVTSLMRSRAKAVNFGIVY--GISAF 799


>gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
          Length = 879

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +++P+    P+++ I   +R   +   G   + AD + IE R
Sbjct: 604 GRIHGHFNQTITATGRISSTEPNLQNIPVRMEIGRQIRKVFVPKPGCVFLDADYSQIELR 663

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA M+ +   + A+ T +D++  T ++ F+V   +VT+ QR+  K +   + Y
Sbjct: 664 ILAHMSQDDKLIAAYNTAQDIHAITASQVFHVPLDEVTRTQRSNAKAVNFGIIY 717


>gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20]
 gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20]
          Length = 894

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAG 383
           P   + H   +Q +T      +++P+    P+++ +S  +R   I S+   L++ AD + 
Sbjct: 615 PYTGKIHSSFNQTVTATGRISSTEPNLQNIPIKLEMSRKIRKVFIPSDENYLLLDADYSQ 674

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA +  ++  + AF   ED++ +T A  F +   +VT   R+  K +   + Y  
Sbjct: 675 IELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGI 734

Query: 444 GAKAFQK 450
           G  +  K
Sbjct: 735 GDFSLAK 741


>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
 gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
 gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
          Length = 922

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 685 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 744

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +T + R   K +   + Y  G  AF
Sbjct: 745 LTSEHRRKAKAINFGIIY--GISAF 767


>gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 936

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 27/152 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++L+ ++  DGR+  T   + A+ TGR +      QN+P  +RS + +           
Sbjct: 648 VDSLIASVADDGRIHTTFSQVAAA-TGRLASADPNLQNIP--ARSADGMR---------- 694

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +A  G + L+ AD + IE R++A ++ ++  + AF +GEDL+
Sbjct: 695 -------------IRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLH 741

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T  +  F    A+VT  QR+  K     L Y
Sbjct: 742 RTMASMVFGTPVAEVTAQQRSRIKATSYGLAY 773


>gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 288

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF  G+D++++T A  F V+  +VT +QR   K +   L Y  
Sbjct: 1   IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY-- 58

Query: 444 GAKAF 448
           G  AF
Sbjct: 59  GMSAF 63


>gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 945

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 107/258 (41%), Gaps = 34/258 (13%)

Query: 196 GYCVDVA-LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
           G  VDVA L   L   +D + T+ ++    L      +    ++L+T LF   G+     
Sbjct: 559 GIAVDVATLEEQLETFID-QVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKK 617

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRS---AVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+T      +  + L  +    F + + A R        L  L+ ++ SDGR+  T    
Sbjct: 618 TKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLIRSVGSDGRIHTTFNQT 677

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            AS TGR S      QN+P  + +  +                         +RS  +  
Sbjct: 678 VAS-TGRLSSTDPNLQNIPVRTEAGRK-------------------------IRSGFVVG 711

Query: 372 EG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+    ++ F+V    VT + R 
Sbjct: 712 EGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRR 771

Query: 431 IGKVMELALGYQGGAKAF 448
             K M   L Y  G  AF
Sbjct: 772 RVKAMSYGLVY--GLSAF 787


>gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
 gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
           P +  +  +R+C + + G +L+VAD A IE RV A +A        F  G D +  T A 
Sbjct: 343 PSEYTAPGLRACFVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVFRAGRDPHRATAAT 402

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLN 460
                  +V   +R + K +     +  GA+ F+  A++  GL+L+
Sbjct: 403 LTGKPEPEVESHERKLAKAVNFGFLFGMGARRFRSYAASGYGLDLD 448


>gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1]
 gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 866

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----L 376
            P Q      R H   +Q+ T        DP+ LQ I   S+  RS   A   KK     
Sbjct: 583 LPKQINAGTQRIHPTFNQVGTVTGRLSCQDPN-LQNIPVRSERGRSLREAFRVKKDNDYF 641

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R LA ++ ++   +AF +GED++  T ++ FNV   QVTK +R   K + 
Sbjct: 642 LAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQAKAVN 701

Query: 437 LALGYQGGAKAFQKM 451
             L Y   A    K+
Sbjct: 702 FGLVYGQQAYGLSKI 716


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376
            PP       + H   +Q++T      +++P+ LQ I        +  ++ + +S+   L
Sbjct: 587 LPPLINSETGKIHTSFNQMVTATGRLSSTNPN-LQNIPIRTEEGREIRKAFIPSSDNMIL 645

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE RV A ++G++   +AF +G D++  T +  F V   QV+ + R   KV+ 
Sbjct: 646 LAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVIN 705

Query: 437 LALGYQGGA 445
             L Y   A
Sbjct: 706 FGLAYGMSA 714


>gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 889

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385
            R H   +Q +       ++DP+ LQ I         +R   +  EG + L+ AD + IE
Sbjct: 612 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 670

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ +   ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y  G 
Sbjct: 671 LRVMAHLSEDAGLIEAFTSGEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAY--GL 728

Query: 446 KAF 448
            AF
Sbjct: 729 SAF 731


>gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 903

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 29/180 (16%)

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           T   + V   R R      + +  L++ + +DGR+  T     A+ TGR S      QN+
Sbjct: 594 TEHELPVLMLRHREQAKLRVTVEGLIKTIATDGRIHTTFNQTVAA-TGRLSSTDPNLQNI 652

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388
           P   R+ E                          +R   +  EG + L+ AD + IE RV
Sbjct: 653 P--VRTDE-----------------------GRAIRRGFVVGEGFETLMTADYSQIELRV 687

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ +   ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y  G  AF
Sbjct: 688 MAHLSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAY--GLSAF 745


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 353  DPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            DP+  Q+  D   R C +   G+ LV AD + IE R+ A + G++  L A++ GEDL+ T
Sbjct: 1213 DPNLQQLPRDPRFRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQKGEDLHTT 1272

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            T AR+  +    VTK  R + K +   L Y  GAKA  
Sbjct: 1273 T-ARAV-LGKTDVTKADRQLSKSLNFGLLYGMGAKALA 1308


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 130/352 (36%), Gaps = 83/352 (23%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P   LP   R H     + T L   ++S    LQ I         +R   +AS+G  L+
Sbjct: 680 LPSYILPTTGRVHTNYS-LATTLTGRLSSSEPNLQNIPVRTAEGRKIRKAFVASKGYLLL 738

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA +A      +AF  G+D++  T ++ F VA   +T + R   K +  
Sbjct: 739 SADYSQIELRILAHVADITALKEAFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINF 798

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y  G   F  +AS  G++                 ++A ++ +   E  P   IED 
Sbjct: 799 GIIY--GISPF-GLASQLGIS----------------RKEASDYIQLYFERFP--GIEDY 837

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 ER K   R             H  + +TI                         
Sbjct: 838 M-----ERTKIFAR-------------HHGYVETI------------------------- 854

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR + Y ++   +S +     +        G   + I +A+   I  E  +  
Sbjct: 855 ------FGRRIHYPEIKTAKSQIRAFNERAAINAPIQGSAADIIRRAM---IQMENALEK 905

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN---PSWAKGLPLKAE 666
            +    ++L VHDE++ E P ++    ++L   +  N   P+ +  +PL+ +
Sbjct: 906 ERLSAKMLLQVHDELIFEVPKSESTKTAILIKKVMENATMPALSLSVPLEVK 957


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379
           P+ L    R H   +Q  T      +SDP+ LQ I         +R   +A +   +V A
Sbjct: 613 PKMLDVNGRVHTSYNQTGTVTGRLSSSDPN-LQNIPIKSPEGRKIRQAFVAEQEFCVVAA 671

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++ ++  LKAF  G D++  T A    ++   VT +QR   K +   L
Sbjct: 672 DYSQIELRIMAHLSKDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGL 731

Query: 440 GYQGGAKAF 448
            Y  G  AF
Sbjct: 732 IY--GMSAF 738


>gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 880

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +++P+   I     +   +R   I  +G   + AD + IE R
Sbjct: 605 GRIHSTFNQTITATGRISSTEPNLQNIPVRTELGRLLRKVFIPKDGFIFLDADYSQIELR 664

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA M+G++  ++A++  +D++  T ++ F++   +VT  QR   K +   + Y
Sbjct: 665 VLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTPLQRRNAKAVNFGIVY 718


>gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
 gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
          Length = 871

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   I  +G   V AD + IE R
Sbjct: 596 GRIHSKFNQTITATGRLSSTEPNLQNIPIRVELGRLIRKVFIPEDGFVFVDADYSQIELR 655

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA  +G+   ++A++  +D++  T ++ F++   +VT  QR   K +   + Y
Sbjct: 656 VLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFDEVTDQQRRNAKAVNFGIVY 709


>gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583]
 gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583]
          Length = 880

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +++P+   I     +   +R   I  +G   + AD + IE R
Sbjct: 605 GRIHSTFNQTITATGRISSTEPNLQNIPVRTELGRLLRKVFIPKDGFIFLDADYSQIELR 664

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA M+G++  ++A++  +D++  T ++ F++   +VT  QR   K +   + Y
Sbjct: 665 VLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTPLQRRNAKAVNFGIVY 718


>gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 903

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 29/180 (16%)

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           T   + V   R R      + +  L++ + +DGR+  T     A+ TGR S      QN+
Sbjct: 594 TEHELPVLMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNI 652

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388
           P   R+ E                          +R   +  EG + L+ AD + IE RV
Sbjct: 653 P--VRTDE-----------------------GRAIRRGFVVGEGFETLMTADYSQIELRV 687

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ +   ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y  G  AF
Sbjct: 688 MAHLSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAY--GLSAF 745


>gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
 gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
          Length = 960

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 28/153 (18%)

Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++A+N +DG +  T +   A+ TGR S      QN+P  +R+ E  D         
Sbjct: 671 VQTLIDAINRTDGHIHTTFEQTVAA-TGRLSSTDPNLQNIP--NRNAEGRD--------- 718

Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                          RS  I +EG   L+ AD + +E R++A  +G++  + AF++G D 
Sbjct: 719 --------------TRSAFIPAEGFDALLSADYSQVELRLMADFSGDEALIDAFKSGADF 764

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +    +  + +    ++ DQR+  K M   L Y
Sbjct: 765 HRYVASLVYGIPVDDISGDQRSHVKAMSYGLAY 797


>gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 904

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L+ ++ SDGR+  T     AS TGR S      QN+P  + +  +            
Sbjct: 616 LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 662

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 663 -------------IRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 709

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               ++ F+V    VT + R   K M   L Y  G  AF
Sbjct: 710 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVY--GLSAF 746


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKK-LVVADLAGIEA 386
            R H   +Q +T      +S+P+   I     I   +R   +   G   ++ AD + IE 
Sbjct: 598 GRIHTHFNQTVTATGRLSSSEPNLQNIPIRTEIGRRIRELFVPGPGYDWIMSADYSQIEL 657

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA M+G+   + AF   +D++  T A  F V  A+VT   RA  K +   + Y
Sbjct: 658 RVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRARAKAVNFGIVY 712


>gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
 gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
          Length = 873

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAG 383
           +  R H   +Q++T      +SDP+ LQ I         +R+      G   LV AD + 
Sbjct: 595 KTKRIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQ 653

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++G++  +KAF  G+D++  T A     A   VT ++R+  K +   + Y
Sbjct: 654 IELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGKAQEDVTSEERSHAKAINFGIIY 711


>gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
 gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
          Length = 847

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC IA EG   +  D + IE R+LA  + ++  L AF+  ED++  T    F     + 
Sbjct: 617 KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHARTAIMIF----GES 672

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R+I K +   L Y  G K   K       NL   A+L KT
Sbjct: 673 NYETRSIAKSINFGLIYGMGYKTLSK-------NLKIEANLAKT 709


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 122/300 (40%), Gaps = 27/300 (9%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           L  EY   D  +T ++ ++ EPL  +   L    +        V+  L + L++I   E+
Sbjct: 494 LIKEYASEDADITLQLKEKFEPLLEETATLKLAQE--------VEFPLVYVLSEI---EK 542

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             +  +++ L+    +    +  L+  ++ + G+     +      VL    +L P+A +
Sbjct: 543 NGVKIDVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVLFDKLQLDPKAKK 602

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
               + +     +L L       N    ++  L F    +         P    P     
Sbjct: 603 TKTGQYKTGEDVLLTL------ANKSDIVQDILDFRQLQKLKSTYVDALPSLINPNTGLI 656

Query: 336 HEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIEARV 388
           H   +Q +       +++P+ LQ I        +  ++ +  SE   ++ AD + IE R+
Sbjct: 657 HTSYNQAVAATGRLSSTNPN-LQNIPIRTERGREVRKAFIPRSENNVILSADYSQIELRL 715

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ +   L+AF+ G D++  T A+ + +   +V+ DQR   K +   + Y  G  AF
Sbjct: 716 MAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIY--GQSAF 773


>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
 gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
 gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
 gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
 gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
 gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
          Length = 911

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 28/156 (17%)

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           + ++ L+ A+ +DGR+  T     A+ TGR S      QN+P  + +  ++         
Sbjct: 618 VTVDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQNIPIRTNAGRQIRD------- 669

Query: 349 SITSDPDPLQIISDCVRSCVIASEGK---KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            + V+ SE     +L+ AD + IE R++A ++ ++  ++AF TG
Sbjct: 670 -----------------AFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLIEAFHTG 712

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           EDL+    +R+F +    +T + R   K M   L Y
Sbjct: 713 EDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAY 748


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+    H   +Q IT      +SDP+ LQ I         +R   I   G     AD + 
Sbjct: 643 PKTGHIHTSFNQTITATGRLSSSDPN-LQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RV+A ++ +   +K F  G+DL+  T A  +     +VT+D+R   K     + Y
Sbjct: 702 IELRVMAHLSQDAEMIKVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIY 759


>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
          Length = 907

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 28/156 (17%)

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           + ++ L+ A+ +DGR+  T     A+ TGR S      QN+P  + +  ++         
Sbjct: 614 VTVDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQNIPIRTNAGRQIRD------- 665

Query: 349 SITSDPDPLQIISDCVRSCVIASEGK---KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            + V+ SE     +L+ AD + IE R++A ++ ++  ++AF TG
Sbjct: 666 -----------------AFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLIEAFHTG 708

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           EDL+    +R+F +    +T + R   K M   L Y
Sbjct: 709 EDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAY 744


>gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14]
          Length = 871

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   +  EG   V AD + IE R
Sbjct: 596 GRIHSKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPKEGCVFVDADYSQIELR 655

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA  +G++  ++A+    D++  T ++ F+V   +VT  QR   K +   + Y
Sbjct: 656 ILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVY 709


>gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 352

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 16/182 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q +T      +S+P+ LQ I         +R+  +A+     + AD + 
Sbjct: 73  PADGRVHTTFNQTVTATGRLSSSNPN-LQNIPIRTPEGRRLRAAFVAAAEHLFLAADYSQ 131

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           I+ RVLA  +G+    +AF   +D++  T A  F V    V+ D R + K +   + Y  
Sbjct: 132 IDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGM 191

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A    +    +     TF            +E  +   R+MQE   E A  D ++GT  
Sbjct: 192 SAFGLAEQLRCSRKEAQTFID--------RYFELYQGVHRFMQEI-VEQARRDGWVGTLL 242

Query: 504 ER 505
           +R
Sbjct: 243 QR 244


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 19/257 (7%)

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           V++ L H L+   D+ERT +  ++E+L     +  + L K +  +F   G+     +   
Sbjct: 532 VELPLVHVLS---DMERTGVKIDVEALHDLSNTLQKDLAKTQEDIFQLAGMEFNVGSPKQ 588

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              +L  + K+  +  +    +           + LV        +R  L F   S+   
Sbjct: 589 LGEILFEHMKIDEKPKKTPTGQYATGE------DILVNYEADHEIVRKILDFRELSKLKS 642

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIAS 371
                 P     R  R H   +Q +       +++P+ LQ I        +  ++ +   
Sbjct: 643 TYVDALPTLISKRTGRIHTTYNQAVAATGRLSSTNPN-LQNIPIRTERGREIRKAFIPGG 701

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           E   ++ AD + IE R++A  +G++  L+AF+ G D++  T ++ F V+  +V  D R  
Sbjct: 702 EEFTILSADYSQIELRIMADFSGDESMLEAFDNGMDIHAATASKVFGVSLEEVNSDMRRK 761

Query: 432 GKVMELALGYQGGAKAF 448
            K++   + Y  G  AF
Sbjct: 762 AKMVNFGIIY--GISAF 776


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q  T      +SDP+ LQ I         +R   I  EG  L+ AD + 
Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++ ++  + AF+   D++  T A  F V    VT + R+  K +   + Y
Sbjct: 631 IELRILAHISEDERLINAFKNNVDIHSQTAAEVFGVDIDDVTPEMRSQAKAVNFGIVY 688


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 11/139 (7%)

Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378
           PQ + P   R H    Q +       ++DP+ LQ I         +R   IA +G  +  
Sbjct: 652 PQMINPDTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPKGWLIAS 710

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           +D + IE R++A ++ +   L AF  GED++  T A  F V P +V+ DQR + KV+   
Sbjct: 711 SDYSQIELRIMAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTPLEVSSDQRRMAKVINFG 770

Query: 439 LGYQGGAKAFQKMASTTGL 457
           L Y  G  AF  +A   GL
Sbjct: 771 LIY--GMSAF-GLARNLGL 786


>gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 916

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 29/156 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DGR+  T     A+ TGR S      QN+P   R+ E                
Sbjct: 631 LIKTIGADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 671

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+ AD + IE RV+A ++ +   ++AF +GEDL+ T 
Sbjct: 672 -------GRAIRHGFVVGEGFEALMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTV 724

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            ++ F V  + V  + R   K M   L Y  G  AF
Sbjct: 725 ASQVFGVERSAVDAEMRRKIKAMSYGLAY--GLSAF 758


>gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
 gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
          Length = 879

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC IA EG   +  D + IE R+LA  + ++  L AF+  ED++  T    F     + 
Sbjct: 649 KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHARTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R+I K +   L Y  G K   K       NL   A+L KT
Sbjct: 705 NYETRSIAKSINFGLIYGMGYKTLSK-------NLKIEANLAKT 741


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 13/136 (9%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382
           P   R H    Q++       ++DP+ LQ I        +  ++ V   EG  L+ AD +
Sbjct: 691 PLTHRVHTTFHQLMAATGRMASTDPN-LQNIPIRTDQGREIRKAFVPEKEGWVLMSADYS 749

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RV+A ++ +   ++AF+ G D++  T A+ + VA  +V  + R   K++   + Y 
Sbjct: 750 QIELRVMAELSADPAMMEAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIY- 808

Query: 443 GGAKAF---QKMASTT 455
            G  AF   Q++ +T+
Sbjct: 809 -GISAFGLSQRLGNTS 823


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P  +R H   +Q +T      +++P+    P+++ +   +R   I+ EG + + AD + I
Sbjct: 616 PVTNRIHSSFNQTVTATGRISSTEPNLQNIPVRLEMGRRLRKVFISKEGHEFIDADYSQI 675

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA +A +   + AF   +D++  T +  F V   +VT   R   K +   + Y
Sbjct: 676 ELRVLAHIAKDDNLIDAFIKNQDIHTRTASEIFEVPMEEVTSLMRGDAKAVNFGIVY 732


>gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805]
 gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805]
          Length = 988

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 12/132 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I      S  +R   +  E   L+ AD + IE 
Sbjct: 697 GRVHTDFNQAVTATGRLSSSNPN-LQNIPIRTEYSRRIRKAFLPQEHWTLLSADYSQIEL 755

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+  G+D++  T AR   +   ++T D+R +GK +   + Y  GA 
Sbjct: 756 RILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LDKDEITADERRLGKTINFGVIYGMGA- 812

Query: 447 AFQKMASTTGLN 458
             Q+ A  TG++
Sbjct: 813 --QRFARETGVS 822


>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
 gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
          Length = 1003

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 115/307 (37%), Gaps = 78/307 (25%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA +G +LV AD + IE RVLA +A      +AF  G D++  T +  FNV    
Sbjct: 760 IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 819

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +  + R   K +   + Y  G  AF                L    S P   E+A N+ +
Sbjct: 820 MPSEVRRRAKAINFGIIY--GISAFG---------------LANQLSIPR--EEASNYIK 860

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              E  P   I D    T      KA+ ++H  V  ++                      
Sbjct: 861 KYFERFP--GIRDYIEET------KAYAREHGFVETIF---------------------- 890

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                                GR + Y D+ ++    N + R      +   +L      
Sbjct: 891 ---------------------GRRIHYPDIRSS----NPSIRAFNERASINARLQGTAAD 925

Query: 604 AVSRDIL-AEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWAK 659
            + R ++  E  ++  K    ++L VHDE++ ET + + E    ++ H+M   + P+ + 
Sbjct: 926 IIRRAMVRMEEALDRAKLSARMLLQVHDELIFETVEAEVEATIPVVRHVMENAAMPAVSM 985

Query: 660 GLPLKAE 666
            +PL  +
Sbjct: 986 SVPLHVD 992


>gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
 gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
          Length = 878

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + SE G  +V AD + IE RVLA M+ ++  ++AF+   D++ TT +  F+V   
Sbjct: 638 IRKAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTASDVFHVTEE 697

Query: 423 QVTKDQRAIGKVMELALGY 441
           +VT D R   K +   + Y
Sbjct: 698 EVTSDMRRAAKAVNFGIVY 716


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 97/440 (22%), Positives = 169/440 (38%), Gaps = 62/440 (14%)

Query: 30  VILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
           +I  AF F+           DP     + Q  +   EN  +  V HN  ++  VLK    
Sbjct: 392 LIGLAFAFEKQKGFYVAVPADPEEAREILQEFRAVFENEQIQKVGHNLKYDLAVLKWH-- 449

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
             + +H  +   +LA S   P     +     +S   +      I +    E  + L   
Sbjct: 450 -GVGVHGKLFDTMLAHSLIEPEMRHGMD---YMSEVYLGYSPISITKLIGDEKSKQLNMA 505

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSSKEQELWYLDQTINDRGYCVDVALA 204
           + P  + A     EY   D  VT +++++LEP L  K QE  +         Y V+  L 
Sbjct: 506 DVPVAKVA-----EYAAEDADVTWQLWEKLEPLLKEKGQERVF---------YEVEAPLI 551

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV-L 263
             L        T ++ E      G+   +  L +  T L  E   H + +     Q   L
Sbjct: 552 PVL--------TAMEYE------GIKVDASALAEFSTQLSKEMANHEQTIYRLAGQEFNL 597

Query: 264 SSNKKLTPQAIQVFNNRMRASRSA--------VLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +S ++L     ++  ++++ S +A             TL++       ++  L + GA++
Sbjct: 598 NSPRQLG----EILFDKLKISENAKKTKTGQYATNEQTLMDLAADHEIVQRLLDYRGATK 653

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCV 368
                    P        R H   +Q +T      + +P+ LQ I        +  ++ V
Sbjct: 654 LKSTYADALPGTIWKPTGRVHTTFNQAVTTTGRLNSQNPN-LQNIPIRTEQGKEIRKAFV 712

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
             +E   L+ AD + IE R++A ++ EQ  L+ F    D++  T AR + V   QVT + 
Sbjct: 713 PRNEDYVLLSADYSQIELRIIAALSHEQGMLEDFGRKLDIHTATAARVYGVPLDQVTPEM 772

Query: 429 RAIGKVMELALGYQGGAKAF 448
           R   K++   + Y  G  AF
Sbjct: 773 RRKAKMVNYGIAY--GISAF 790


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 29/175 (16%)

Query: 276 VFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           V  + +R    A LK  ++ L+++++ DGR+  T     A+ TGR S      QN+P  +
Sbjct: 594 VLGHLLRHRDVAKLKTTVDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT 652

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                +                         R+ V+ +  + L+ AD + IE R++A ++
Sbjct: 653 EEGRRIR------------------------RAFVVGTGYECLLTADYSQIEMRIMAHLS 688

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            ++  + AF +G D +  T +  F V    VT DQR   K M   L Y  G  AF
Sbjct: 689 ADEALIDAFNSGLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGLAY--GLSAF 741


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 35/178 (19%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT----------- 412
           +RS   A +G KL+VAD   +E R+LA M   +  ++AF+ G D +  T           
Sbjct: 721 IRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEAFKMGGDFHSRTAMGMYPKLKEE 780

Query: 413 ---------YARSFNVAPAQVTKD----QRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                    + +S    PA + KD    +R   K+M  ++ Y   A  F K  + +    
Sbjct: 781 IEKGELLLEWDKSQGEPPAPLLKDKYSSERKKAKMMNFSIAYGKSAHGFSKDWNCS---- 836

Query: 460 NTFAHLVKTNSAPEEW-EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                + +   A + W  D +    W QEN  + A+E  +  T   R +   R  HS+
Sbjct: 837 -----MKEAQEALDAWFADRKEVKEW-QENTKKIALEHGYTQTMMGRYRNLERLTHSK 888


>gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 879

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q IT      +++P+    P+++ +   +R   +  +G   + AD + IE RV
Sbjct: 605 RIHGKFNQTITATGRISSTEPNLQNIPIRMELGRAIRKVFLPEDGYVFLDADYSQIELRV 664

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ ++  + A+E  +D++  T +  F +   +VT  QR   K +   + Y  G  AF
Sbjct: 665 LAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRRDAKAVNFGIIY--GLSAF 722


>gi|332259946|ref|XP_003279044.1| PREDICTED: DNA polymerase nu-like [Nomascus leucogenys]
          Length = 1502

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            R S  H  +  I  H P  IT+  +      +I++   R+  ++S+G   + AD + IE 
Sbjct: 1173 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 1231

Query: 387  RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
            R+LA ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G
Sbjct: 1232 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 1291

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 1292 K---ERLAACLGIPVQEAAQFLE--SFLQKYKKIKDFAR 1325


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T D R I K +   + Y+
Sbjct: 729 ITPDLRRIAKSINFGIIYR 747


>gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
 gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
          Length = 898

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  +G   L+ AD + IE R++A ++G+   + AF  G DL+    +R F VA +
Sbjct: 657 IREVFVPGDGYDYLMTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAES 716

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
           +VT  QR+  K M   L Y  G  AF
Sbjct: 717 EVTPAQRSKIKAMSYGLVY--GLSAF 740


>gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1]
 gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1]
          Length = 887

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 29/187 (15%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASR 315
           +T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA-- 622

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +   +++ +        + ++PD        + SC        
Sbjct: 623 TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VPTEPD------GYIFSC-------- 662

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
               D + +E RVLA ++G+Q   +AF+TG D++  T  R F++ +P +VT   R   K 
Sbjct: 663 ----DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKA 718

Query: 435 MELALGY 441
           +   + Y
Sbjct: 719 VNFGIVY 725


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q  T      +SDP+ LQ I         +R   I  EG  L+ AD + 
Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++ ++  + AF+   D++  T A  F V    VT + R+  K +   + Y
Sbjct: 631 IELRILAHISEDERLINAFKNNVDIHSQTAAEIFGVDIDDVTPEMRSQAKAVNFGIVY 688


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 650 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 709

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T D R I K +   + Y+
Sbjct: 710 ITPDLRRIAKSINFGIIYR 728


>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
 gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
          Length = 932

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EGK LV  D + IE R+LA +A      +AF  G D++  T +  F+V   Q
Sbjct: 692 IREAFIAEEGKVLVALDYSQIELRILAHVADIPSLKQAFADGMDIHAMTASEMFDVPLDQ 751

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 752 MTSDIRRQAKAINFGVIY 769


>gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
 gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
          Length = 863

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H   +Q +T      ++ P+ LQ I         VR   IA+   KL+  D + 
Sbjct: 590 PKDERVHTSFNQALTTTGRLSSTQPN-LQNIPIRTARGQQVRKAFIAAPRMKLLSVDYSQ 648

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA ++ +    KAF    D++  T A  F V    VT + R   K +   + Y  
Sbjct: 649 IELRILAHISEDPNLCKAFAEDLDIHAATAAEVFGVPLKDVTAEHRRSAKAVNFGIAYGQ 708

Query: 444 GA 445
           GA
Sbjct: 709 GA 710


>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
 gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
          Length = 877

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGI 384
           +  + H   +Q +T      ++DP+    P+++     +R   + SE G  +  AD + I
Sbjct: 599 KTGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKGWVIFAADYSQI 658

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA +AG++  ++AF   +D++  T    F+V+  +VT + R   K +   + Y
Sbjct: 659 ELRVLAHIAGDEKLIEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAVNFGIVY 715


>gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
 gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
          Length = 887

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 29/187 (15%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASR 315
           +T   VL   K  +P   ++ + R  A   +   +  L++ +  DGR+    LQ L A  
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA-- 622

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +R+ EE  QI       + ++PD        + SC        
Sbjct: 623 TGRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VPTNPD------GYIFSC-------- 662

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
               D + +E RVLA ++G+Q   +AF+TG D++  T  R F++ +P +VT   R   K 
Sbjct: 663 ----DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKA 718

Query: 435 MELALGY 441
           +   + Y
Sbjct: 719 VNFGIVY 725


>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
          Length = 876

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 13/119 (10%)

Query: 336 HEELDQIITHLPTSIT-----SDPDP-LQII------SDCVRSCVIAS-EGKKLVVADLA 382
           HE+ D++ T    ++T     S  DP LQ I         +R   + S EG  +  AD +
Sbjct: 596 HEDSDKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWVIFAADYS 655

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE RVLA ++G++  ++AF+  ED++  T    F+V+   VT + R   K +   + Y
Sbjct: 656 QIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAVNFGIVY 714


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G+KL+ AD + IE RVLA MA      KAFE G D++  T +  F      
Sbjct: 758 IRQAFIAEKGQKLISADYSQIELRVLAHMADIPQLKKAFEDGLDIHAMTASEMFGTPIEG 817

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    R   K +   + Y  G  AF  +A+  G++       +KT
Sbjct: 818 MDPMVRRQAKAINFGIIY--GISAF-GLANQLGISRGEAGDYIKT 859


>gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 909

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 29/156 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DGR+  T     A+ TGR S      QN+P   R+ E                
Sbjct: 624 LIKTIAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 664

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+ AD + IE RV+A ++ +   ++AF +GEDL+ T 
Sbjct: 665 -------GRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDLGLIEAFTSGEDLHTTV 717

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            ++ F+V  + V  + R   K M   L Y  G  AF
Sbjct: 718 ASQVFSVERSAVDAEMRRKIKAMSYGLAY--GLSAF 751


>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
 gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
          Length = 905

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGK-KLVVADLAG 383
           R  + H    Q++T      +++P+ LQ I         +R   + S G  +L  AD + 
Sbjct: 625 RDGKVHTTFQQMVTATGRLSSTEPN-LQNIPIRMEEGRKLRKVFVPSRGGWELFSADYSQ 683

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA  + +    ++F+TGED++  T +  F V   QVT D R   K +   L Y
Sbjct: 684 IELRVLAHYSQDPILCQSFQTGEDVHARTASEVFGVPLEQVTPDMRRKAKAVNFGLMY 741


>gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 882

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 36/190 (18%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-----DGRLRGTLQFL 311
           +T Q VL   +KL  ++  +  N +   +   LK NT ++ + +      GR+       
Sbjct: 562 STAQDVL---EKLVDES-PIIENILEYRKLTKLK-NTYIDGLKALINEKTGRIHSRFNQT 616

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           G S TGR S      QN+P   RS E                          +R   +AS
Sbjct: 617 GTS-TGRISSTEPNLQNIP--IRSEE-----------------------GRLIRGAFLAS 650

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           E   LV  D + IE RVLA ++ +   ++AFE G D++  T +  F+V    VT   R+ 
Sbjct: 651 EDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHGMDIHTKTASEVFHVDKEDVTDLLRSR 710

Query: 432 GKVMELALGY 441
            K +   + Y
Sbjct: 711 AKAVNFGIVY 720


>gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
 gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
          Length = 854

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +G   V AD + +E RVLA +  E+   +AFE   D++  T +  FNV P  VT + R  
Sbjct: 626 DGNIFVAADYSQVELRVLAHLCDEKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRF 685

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLN 458
            KV+   L Y  G  +F  +AS  G+ 
Sbjct: 686 AKVVNFGLLY--GMSSF-GLASRLGIG 709


>gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 145

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    
Sbjct: 7   IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 66

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 67  VTGEQRRSAKAINFGLIY--GMSAF 89


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +RS  IA+ GKKL+ AD + IE RVLA MA       AF  G D++  T +  F V    
Sbjct: 766 IRSAFIAAPGKKLISADYSQIELRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKD 825

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 826 MPGEVRRRAKAI 837


>gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer]
 gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer]
          Length = 605

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 125/521 (23%), Positives = 188/521 (36%), Gaps = 113/521 (21%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           D+   G+ +  E  CV  FA+ +DD  +   L D V + +  Q   +  E  + TI+ HN
Sbjct: 40  DIETPGLDRAFEINCVT-FAWRWDDGSIHSVLLDPVGNTLHRQACIDLYERAE-TIILHN 97

Query: 73  SYFERTVLK--ACFNL--DIPIHRWICTLVLARSNGLPSALKAVGEALK------LSSQK 122
           + F+   L+    F    +I I++ + TL+LAR + LP     V ++L       L    
Sbjct: 98  APFDIPALRHAGLFGTSPNIAINKVVDTLLLARFS-LPDV--TVSKSLTALSIRYLGLSD 154

Query: 123 MEEGKELIARFCKGETHECLYDR---NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            ++G ++       +T +  Y+      P +R            D   T     +LEPL 
Sbjct: 155 FKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVG-------AMADTIATL----KLEPLL 203

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK- 238
                 W LD    D G   D      L     V R  L +  + L       +R  E+ 
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQEIVHRVMLRRTGKGLAVDHEYLTRYQEEK 263

Query: 239 ---------LKTWLFLETGL--------HLEDLTETTCQ--RVLSSNKKLTPQAIQVFNN 279
                    L     LE G         +L ++ +      R  +   K T   +  F++
Sbjct: 264 DAERIQHEALLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGFDH 323

Query: 280 ------RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
                 R  A    VL   T VE   +  GR    +  LGAS TGR +  +   Q  P+ 
Sbjct: 324 PLTIAQRKLAEVDKVLGYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPELQQFPKD 383

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +R                                 +I  +G+ L   D + IE   +A M
Sbjct: 384 ARP--------------------------------IITDDGQGLTSIDWSQIEPVTMANM 411

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           AG+   L  FE GEDLY     RS  +    +TK+ R I KV+ LA  Y           
Sbjct: 412 AGDVGFLIPFEAGEDLY-EPIQRSCGL---PMTKEGRDIAKVVLLATMY----------- 456

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
              G+ +N  A  +K        E A+   R M    PE A
Sbjct: 457 ---GMGVNGLALKIKHTV-----ESAQQIRRQMLAAMPESA 489


>gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon]
 gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon]
          Length = 609

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAW 391
           R H  ++ +        TS+P    + S    VR C +A  G+ +   D    E RVLA 
Sbjct: 343 RVHPGINPLQARTGRMSTSNPSAQNLPSGDWMVRRCFLADPGQIIASVDYRAQELRVLAA 402

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G+Q  L+AF+   DL+  T         A      R IGK+    + Y GGA    K+
Sbjct: 403 LSGDQTMLRAFKEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAG---KL 450

Query: 452 ASTTGLNL 459
           A+  G+  
Sbjct: 451 ATNAGITF 458


>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
 gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
          Length = 934

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG  LV  D + IE R+LA MA      +AF  G D++  T +  FNV   +
Sbjct: 694 IREAFVAPEGHTLVSLDYSQIELRILAHMADIDALKQAFRDGLDIHAMTASEMFNVPLDE 753

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 754 MTPDIRRQAKAINFGVIY 771


>gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 870

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   I  EG   V AD + IE R
Sbjct: 595 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEEGYVFVDADYSQIELR 654

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA  +G+Q  + A+   +D++  T ++ F+    +VT+ QR   K +   + Y
Sbjct: 655 ILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVY 708


>gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008]
 gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008]
          Length = 873

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIEA 386
           R H   +Q++T      +SDP+ LQ I         +R+      G   LV AD + IE 
Sbjct: 598 RIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIEL 656

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R+LA ++G++  +KAF  G+D++  T A     A   VT ++R+  K +   + Y
Sbjct: 657 RILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQDDVTSEERSHAKAINFGIIY 711


>gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 138

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    
Sbjct: 5   IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 64

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT +QR   K +   L Y  G  AF
Sbjct: 65  VTGEQRRSAKAINFGLIY--GMSAF 87


>gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 887

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV-------RSCVIASEGKKLVV 378
           P  +    + H    Q +T      ++DP+ LQ I   +       ++ V A EG +L  
Sbjct: 603 PTYIKEDGKIHSRFVQTLTQTGRLSSADPN-LQNIPARIEEGRRIRQAFVPAHEGWQLFG 661

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           AD + IE RVLA +A +Q  + AF++GED++  T  R F + P  V
Sbjct: 662 ADYSQIELRVLAHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTV 707


>gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
 gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
          Length = 937

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +  EG  L+  D + IE R+LA +AG     +AF  G+D++  T +  FNV   +
Sbjct: 697 IREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEE 756

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 757 MTSDIRRQAKAINFGVIY 774


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H   +Q  T        DP+   I     +   +R   IA EG  LV  D + I
Sbjct: 555 PRTGRLHTRFNQTATATGRLCCCDPNLQNIPVRTPLGQRIRRGFIAEEGWLLVALDYSQI 614

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA ++G++  ++ F+ G D++  T +  F V    V    R   K +   + Y
Sbjct: 615 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +  EG  L+  D + IE R+LA +AG     +AF  G+D++  T +  FNV   +
Sbjct: 697 IREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEE 756

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 757 MTSDIRRQAKAINFGVIY 774


>gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
 gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
          Length = 871

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   I  +G   + AD + IE R
Sbjct: 596 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEDGYVFIDADYSQIELR 655

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA  +G++  + A++  +D++  T ++ F+V   +VT  QR   K +   + Y
Sbjct: 656 VLAHCSGDEQLINAYKEQKDIHRITASQVFHVPFGEVTDLQRRNAKAVNFGIVY 709


>gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 870

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   I  EG   V AD + IE R
Sbjct: 595 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEEGYVFVDADYSQIELR 654

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA  +G+Q  + A+   +D++  T ++ F+    +VT+ QR   K +   + Y
Sbjct: 655 ILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVY 708


>gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
 gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
          Length = 882

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 169/427 (39%), Gaps = 73/427 (17%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLD-IPIHRWICTLVLARS 102
           WD   D     VL E LE+     + H+S  F+  +LK    L+ +    +I   +L  +
Sbjct: 349 WDLT-DTEAKAVLIEFLESATYQKIVHDSKNFKHELLKVGLGLNGVCFDTFIAAYLLHPT 407

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
           N   S   A  E L ++ Q +   + L+ +    +T   L D  + N+       G+  +
Sbjct: 408 N--KSYDLAELEELFINKQSLMNLENLLGKGKSQKTWLQLEDEERINN------LGKRSQ 459

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE- 221
             ++VT  + + L+            +Q +    Y +++ L   L  + +VE  K+D E 
Sbjct: 460 LALSVTEAMKEALQ------------EQNMTRLFYDIEMPLIDVLFDM-EVEGIKVDPEG 506

Query: 222 -----------LESLTYGLVSSS------RCLEKLKTWLFLETGLHLEDLTET---TCQR 261
                      L++LT  +  ++         ++L   LF + G+     T+T   T   
Sbjct: 507 LRSYGEELQGLLDTLTTSIYEAAGESFNINSPKQLGVILFEKLGIPCAKKTKTGYSTAAE 566

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL + K   P   Q+   R  A   +   ++ L+  +    ++  T      + TGR S 
Sbjct: 567 VLEALKNDYPIVAQILEYRQYAKLKSTY-VDGLLNVLTEQNKIHSTFN-QTITATGRLSS 624

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P      +++ Q+                         V +SE    +  D 
Sbjct: 625 TEPNLQNIPVKFEMGKKIRQLF------------------------VPSSENHIFLDGDY 660

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA M+G+   +KAF+   D++  T ++ F+V    VT  QR+  K +   + Y
Sbjct: 661 SQIELRVLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFEDVTSMQRSNAKAVNFGIVY 720

Query: 442 QGGAKAF 448
             G  AF
Sbjct: 721 --GISAF 725


>gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM]
 gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM]
          Length = 933

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  GK+LV  D + IE R+LA +AG     +AF  G D++  T +  F V   +
Sbjct: 693 IREAFVADAGKRLVSLDYSQIELRILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLDE 752

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 753 MTSDVRRRAKAINFGVIY 770


>gi|332818964|ref|XP_001147379.2| PREDICTED: DNA polymerase nu isoform 3 [Pan troglodytes]
          Length = 1502

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            R S  H  +  I  H P  IT+  +      +I++   R+  ++S+G   + AD + IE 
Sbjct: 1173 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 1231

Query: 387  RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
            R+LA ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G
Sbjct: 1232 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 1291

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 1292 K---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 1325


>gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
          Length = 880

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            PP      ++ H   +Q++T      +++P+ LQ I         +R   I S    ++
Sbjct: 587 LPPLINDETAKIHTSFNQMVTATGRLSSTEPN-LQNIPIRTEEGREIRKAFIPSRSDMIL 645

Query: 378 VA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +A D + IE RV A ++G+Q   +AF    D++  T A  F V    VT D R   KV+ 
Sbjct: 646 LAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTETAAEVFEVKAEAVTPDLRRHAKVIN 705

Query: 437 LALGYQGGA 445
             + Y   A
Sbjct: 706 FGIAYGMSA 714


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 867

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   I+S +G  +V AD + IE RVLA ++ +   +++F   ED+++ T +  F +AP 
Sbjct: 627 IRKAFISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPE 686

Query: 423 QVTKDQRAIGKVMELALGY 441
           +VT + R   K +   + Y
Sbjct: 687 EVTGEMRRRAKAVNFGIVY 705


>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
 gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
          Length = 912

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 25/151 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L+  ++  GR+  T Q   A+ TGR S      QN+P  +     + Q         
Sbjct: 624 IDGLIPMVDDGGRIHTTFQQTIAA-TGRLSSIDPNLQNIPIRTAEGRRIRQ--------- 673

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                          + V+ S  + L+ AD + IE R++A ++G+   ++AF +GEDL+ 
Sbjct: 674 ---------------AFVVGSGHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHS 718

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
              +R++++    V  + R   K M   L Y
Sbjct: 719 FVASRAYDIPIEDVDPEMRRRIKAMSYGLAY 749


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 328 NLP-----RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKL 376
           NLP     R    H   +Q +T      +SDP+ LQ I         +R C I   G   
Sbjct: 635 NLPTLINKRTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRTDDGKEIRKCFIPEPGCLF 693

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + IE R++A ++G++  ++AF  G D++  T A+ ++    +VT  QR   K   
Sbjct: 694 FSADYSQIELRIMAHLSGDENMIEAFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQAN 753

Query: 437 LALGY 441
             + Y
Sbjct: 754 FGIIY 758


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 42/189 (22%)

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330
           + IQ++    R  +   + + ++ E M+  G +R +   LGA  +GR S C+ P  Q +P
Sbjct: 342 EVIQIYLEWKRCEKRRQM-IESIQEKMDGTGFVRASYMQLGAE-SGRMS-CIKPNNQQIP 398

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  +                              RSCV A EG  LV AD   +E R+ A
Sbjct: 399 RDKQ-----------------------------FRSCVEAPEGWLLVDADFGQMELRLAA 429

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +A ++  + AF+ GED +  T         A+     R   K     L Y  GA   + 
Sbjct: 430 AVADDERMIAAFQAGEDPHTVT---------AKAIGCDRQTAKSANFGLLYGSGATGLRN 480

Query: 451 MASTTGLNL 459
            A   G+ +
Sbjct: 481 YAGGMGITM 489


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 6/138 (4%)

Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           VR   IA +    L+ AD + IE R++A ++ E   + +F   ED++ +T A+ F+V   
Sbjct: 692 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLE 751

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT++QR+  K +   + Y  G  AF  +++ T L+ +    L+ T  A   + +  N+ 
Sbjct: 752 EVTREQRSHAKTVNFGIIY--GVSAF-GLSAQTNLSRSESKELIDTYYA--TYPNLRNYI 806

Query: 483 RWMQENHPEHAIEDLFIG 500
               +   EH   +  +G
Sbjct: 807 SKQIQFAQEHGYVETVLG 824


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R    H   +Q +T      +SDP+ LQ I         +R C +   G     AD + I
Sbjct: 643 RTQHIHTSFNQALTATGRLSSSDPN-LQNIPVRSEDGKEIRKCFVPEPGCLFFSADYSQI 701

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++G++  ++AF  G D++  T A+ ++   A VT ++R   K     + Y
Sbjct: 702 ELRIMAHLSGDENMIEAFREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIY 758


>gi|313631118|gb|EFR98659.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 56

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
           G+   Y   T +   ++YTYGGKL ENIVQA++RD LA  +     AG
Sbjct: 6   GHQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAVSLRRIEDAG 53


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 27/151 (17%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L + +N D GR+  +    GAS TGR +      QN+P   RS E             
Sbjct: 646 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 689

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +A EGK LV  D + IE R+LA +A       AF+ G+D++ 
Sbjct: 690 ----------GRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKAAFDDGQDIHA 739

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  F+V   ++T + R   K +   + Y
Sbjct: 740 MTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770


>gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
 gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
          Length = 871

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   +  EG   V AD + IE R
Sbjct: 596 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPKEGCVFVDADYSQIELR 655

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA  +G++  ++A+    D++  T ++ F+V   +VT  QR   K +   + Y
Sbjct: 656 ILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVY 709


>gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus]
 gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus]
          Length = 943

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 25/164 (15%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           N L+  +N++     T      + TGR S      QN+P  +R+H+              
Sbjct: 657 NKLISMVNTESNRIHTSYNQTRTATGRLSSANPNLQNIP--NRNHD-------------- 700

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   IA     +V AD + IE R++A ++ +   +  F +G+D++ T
Sbjct: 701 ---------GRKIRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFLSGKDIHTT 751

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           T +  F  +   VT +QR   K +   L Y   A    K  S T
Sbjct: 752 TASEIFVTSLNLVTNEQRHQAKTINFGLIYGMSAFGLSKQLSVT 795


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 6/138 (4%)

Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           VR   IA +    L+ AD + IE R++A ++ E   + +F   ED++ +T A+ F+V   
Sbjct: 692 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLE 751

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT++QR+  K +   + Y  G  AF  +++ T L+ +    L+ T  A   + +  N+ 
Sbjct: 752 EVTREQRSHAKTVNFGIIY--GVSAF-GLSAQTNLSRSESKELIDTYYA--TYPNLRNYI 806

Query: 483 RWMQENHPEHAIEDLFIG 500
               +   EH   +  +G
Sbjct: 807 SKQIQFAQEHGYVETVLG 824


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 373 GKKLVV--ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           G + V+  AD + IE R++A  +G+Q  L+AF  G D++  T ++ F+V   +VT D R 
Sbjct: 792 GPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIHTQTASKVFHVGLDEVTSDMRR 851

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 852 KAKTINFGIIY 862


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASE-GKKLVVADLA 382
           P   + H   +Q +T      +++P+ LQ I         +R   + SE G  ++ AD +
Sbjct: 603 PVTGKVHTTFNQTVTATGRLSSTEPN-LQNIPIRMEEGRRIRKAFVPSEPGWIILSADYS 661

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA ++G++  ++AF   ED++  T A  F V+  +VT + R+  K +   + Y
Sbjct: 662 QIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAVNFGIVY 720


>gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 552

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA E   LV AD +  E R+ A MAG++  +  F    D++  T +  + +   Q
Sbjct: 471 IRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQ 530

Query: 424 VTKDQRAIGKVMELALGY 441
           VT +QR   KV+   + Y
Sbjct: 531 VTSNQRRNAKVINFGVLY 548


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
           bacterium]
          Length = 894

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q +       +S+P+   I     +   +R   +A     L+ AD + +E RV
Sbjct: 620 RVHTSFNQTVAATGRLSSSNPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADYSQVELRV 679

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ ++  + AF+ GED++  T    F   P ++  + R + K +   + Y  G  AF
Sbjct: 680 LAHLSEDEALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNFGIVY--GLSAF 737


>gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
 gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
          Length = 867

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 32/166 (19%)

Query: 288 VLKLN-TLVEAM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           + K+N T VE +    + DGR+         + TGR S      QN+P       E+ ++
Sbjct: 572 ITKINSTYVEGLKNVVDEDGRIHSNFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKV 630

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +P   T          D + SC            D + IE RVLA +AG++  + AF
Sbjct: 631 F--IPMEET----------DILVSC------------DYSQIELRVLAHIAGDENMIDAF 666

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           E   D++  T +  F V   +VT   R+  K +   + Y  G  AF
Sbjct: 667 EHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIVY--GISAF 710


>gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
 gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
          Length = 873

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIEA 386
           R H   +Q++T      +SDP+ LQ I         +R+      G   LV AD + IE 
Sbjct: 598 RIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIEL 656

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   + Y
Sbjct: 657 RILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIY 711


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 42/79 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D+++ T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHIETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIE 385
            R H   +Q +T      +SDP+ LQ I         +R+     EG   L+ AD + IE
Sbjct: 602 GRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRMIRALFEPGEGYDYLLSADYSQIE 660

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            R+LA M+G++  +  F+ G+D++  T A  F +   +VT + R   K +   + Y
Sbjct: 661 LRLLAHMSGDENFIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNFGIVY 716


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 635

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+ +  ++   +V AD + IE RVLA ++ ++  ++AF   ED+++ T +  F V P  V
Sbjct: 397 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 456

Query: 425 TKDQRAIGKVMELALGY 441
           T + R   KV+   + Y
Sbjct: 457 TPEMRRAAKVVNFGIIY 473


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG  L+  D + IE R+LA +AG     +AF  G D++  T +  F+V   +
Sbjct: 695 IREAFVADEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEE 754

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 755 MTPDIRRKAKAINFGVIY 772


>gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44]
 gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44]
          Length = 877

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIEA 386
           R H   +Q++T      +SDP+ LQ I         +R+      G   LV AD + IE 
Sbjct: 602 RIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   + Y
Sbjct: 661 RILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIY 715


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q  T      +SDP+ LQ I         +R   +   G  L+ AD + 
Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++ ++  + AF+   D++  T A  F V  A VT + R+  K +   + Y
Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVY 688


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I      S  +R   +  +   L+ AD + IE 
Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTAYSRQIRKAFLPQKDWTLLSADYSQIEL 753

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  + GE+  ++A+ +G+D++  T AR   +  ++V+ ++R +GK +   + Y  GA 
Sbjct: 754 RILTHLCGEEALVEAYNSGDDVHALT-ARLL-LDKSEVSDEERRLGKTINFGVIYGMGA- 810

Query: 447 AFQKMASTTGLN 458
             Q+ A  TG++
Sbjct: 811 --QRFARATGVS 820


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q  T      +SDP+ LQ I         +R   +   G  L+ AD + 
Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++ ++  + AF+   D++  T A  F V  A VT + R+  K +   + Y
Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVY 688


>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
 gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
          Length = 936

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG  L+  D + IE R+LA MAG +   +AF  G+D++  T +  F V   +
Sbjct: 696 IREAFVAEEGNVLLSLDYSQIELRILAHMAGIETLQQAFAEGQDIHALTASEMFGVPLEE 755

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 756 MTPEIRRQAKAINFGVIY 773


>gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 311

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 17/168 (10%)

Query: 328 NLPR------PSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLV 377
           +LPR      PS S     Q I+  P  IT+  +      +I++   R+  ++S+G   +
Sbjct: 92  SLPRTGLQKYPSTSEAVNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFL 151

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            AD + IE R+LA ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +
Sbjct: 152 AADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKV 211

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
             A+ Y  G    +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 212 VYAVVYGAGK---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 254


>gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 887

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 10/126 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382
           P   + +   +Q +T      +SDP+ LQ I        +  R  V +S    LV AD +
Sbjct: 608 PETEKIYSHFNQTVTATGRISSSDPN-LQNIPVRTDLGREIRRVFVPSSPMCVLVDADYS 666

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA +  ++  L+AF   +D++  T +  F V    VT++QR+  K +   L Y 
Sbjct: 667 QIELRVLAHLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIY- 725

Query: 443 GGAKAF 448
            G +AF
Sbjct: 726 -GKQAF 730


>gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 896

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 27/152 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++L+  + +D R+  T   + A+ TGR +      QN+P  +RS               
Sbjct: 608 VDSLIATVGADERIHTTFSQVAAA-TGRLASSDPNLQNIP--ARS--------------- 649

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              PD ++I     R       G   L+ AD + IE R++A ++G++  ++AF +GEDL+
Sbjct: 650 ---PDGMRI-----RGAFTPGPGYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLH 701

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T  +  F     QV+ ++R+  K     L Y
Sbjct: 702 RTMASMVFGTPVEQVSGEERSRIKATSYGLAY 733


>gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium glutamicum ATCC 13032]
          Length = 905

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L+  +  DGR+  T     AS TGR S      QN+P  + +  +            
Sbjct: 617 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 663

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 664 -------------IRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 710

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               ++ FNV    VT + R   K M   L Y  G  AF
Sbjct: 711 NYVGSKVFNVPIDGVTPELRRQVKAMSYGLVY--GLSAF 747


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382
           PR  R H   +Q +T      +S+P+ LQ I         +R+    S+G   L+ AD +
Sbjct: 587 PRTKRIHTSFNQTVTATGRLSSSEPN-LQNIPVRTEEGRQIRALFEPSDGYDALMSADYS 645

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA ++ ++  L+AF  G+D++  T +  F V    VT D R   K +   + Y
Sbjct: 646 QIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVY 704


>gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q  T      +SDP+ LQ I         +R   +   G  L+ AD + 
Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++ ++  + AF+   D++  T A  F V  A VT + R+  K +   + Y
Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVY 688


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382
           PR  R H   +Q +T      +S+P+ LQ I         +R+    S+G   L+ AD +
Sbjct: 588 PRTKRIHTSFNQTVTATGRLSSSEPN-LQNIPVRTEEGRQIRALFEPSDGYDALMSADYS 646

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA ++ ++  L+AF  G+D++  T +  F V    VT D R   K +   + Y
Sbjct: 647 QIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVY 705


>gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 833

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)

Query: 336 HEELDQIITHLPTSITSDPDPLQIIS------DCVRSCVIASEGKKLVVADLAGIEARVL 389
           H   +Q  T      +SDP+ LQ IS        +R   +ASEG  L+  D + IE RVL
Sbjct: 566 HTSFNQHATQTGRLSSSDPN-LQNISVRDEETRMIRKAFVASEGCTLMSIDYSQIELRVL 624

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +++A E+  ++AF  G D++  T    F V    VT   R   K +   + Y
Sbjct: 625 SYLADEKRMMEAFNGGHDIHSETAKAIFGV--DDVTSTMRRQAKSVNFGIVY 674


>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 875

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +T + R   K +   + Y  G  AF
Sbjct: 698 LTSEHRRKAKAINFGIIY--GISAF 720


>gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27]
 gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27]
          Length = 877

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIEA 386
           R H   +Q++T      +SDP+ LQ I         +R+      G   LV AD + IE 
Sbjct: 602 RIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGTGYDTLVSADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   + Y
Sbjct: 661 RILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIY 715


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G   V  D + IE R++A ++ E   + AF+ GED++  T A  F V   +
Sbjct: 616 IRRAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDE 675

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           V    R+  K +   + Y   +    + AS T
Sbjct: 676 VDDLLRSRAKAVNFGIIYGISSFGLSETASIT 707


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P   LP+  R H      IT      +S+P+ LQ I         +R+  +A +   L+
Sbjct: 680 LPSYILPKTGRVHTNYSLAITSTGRLSSSEPN-LQNIPVRTAEGRKIRTAFVAPKRHVLL 738

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA +A      +AF  G+D++  T ++ F VA   +  D R   K +  
Sbjct: 739 SADYSQIELRILAHIANITALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINF 798

Query: 438 ALGYQGGAKAFQKMASTTGLN 458
            + Y  G  AF  +A+  GL+
Sbjct: 799 GIIY--GISAF-GLANQLGLS 816


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 27/151 (17%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L + +N D GR+  +    GAS TGR +      QN+P   RS E             
Sbjct: 646 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 689

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +A EGK LV  D + IE R+LA +A       AF+ G+D++ 
Sbjct: 690 ----------GRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKTAFDDGQDIHA 739

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  F+V   ++T + R   K +   + Y
Sbjct: 740 MTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 34/217 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNT 293
           ++L+  LF E G+     T+T       +   L  Q    F   +   R A    + ++ 
Sbjct: 594 KQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHRDATRLKVTVDG 653

Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           L++++ +DGR+  T  Q + A  TGR S      QN+P  + +                 
Sbjct: 654 LLKSIAADGRIHTTYSQTIAA--TGRLSSTEPNLQNVPIRTAAGRR-------------- 697

Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R+  +  +G  +L+ AD + IE R++A ++ +   ++AF +  D +  
Sbjct: 698 -----------IRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRDFHSE 746

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           T ++ F V  A V+ +QRA  K M   L Y  G  AF
Sbjct: 747 TASKVFGVDAADVSPEQRAKIKAMNYGLAY--GLSAF 781


>gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 598

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q IT      +++P+    P+++ +   +R   +  +G   + AD + IE RV
Sbjct: 324 RIHGTFNQTITATGRISSTEPNLQNIPVRMELGREIRKIFVPEDGYVFIDADYSQIELRV 383

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           LA M+G++  + A+   ED++  T +  F+    +VT  QR   K +   + Y
Sbjct: 384 LAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKAVNFGIVY 436


>gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122]
 gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122]
          Length = 905

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 336 HEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVL 389
           H   +Q +T      +SDP+   I         +R C +    G   + AD + IE R+L
Sbjct: 632 HTHFNQTVTTTGRLSSSDPNLQNIPVRTEFGRRIRGCFVPLRTGDLFMSADYSQIELRLL 691

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ ++  + AF +G D + +T AR F V   +VT   R+  K +   + Y  G +AF 
Sbjct: 692 AHLSRDEHLVHAFCSGADFHASTAARVFGVPLEEVTPSMRSRAKAVNFGIVY--GQQAF- 748

Query: 450 KMASTTGLNL 459
            +A   G+  
Sbjct: 749 GLAQNLGIGF 758


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 86/281 (30%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   + S+   L+ +D + IE RVLA ++ ++  + AF+ G D++ +T  R F +  A+
Sbjct: 637 IRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGIEKAE 696

Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R   K +   + Y  G   F  +A   G+                  +DA+N+ 
Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E +P        I T  E + +  R K              F +T       ++ +
Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +              + R+   R     R+ +N+                   +
Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637
           Q  + DIL   M+N  KA  +      ++L VHDEI+ + P
Sbjct: 798 QGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVP 838


>gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5]
 gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5]
          Length = 871

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   +  EG   + AD + IE R
Sbjct: 596 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPKEGYVFIDADYSQIELR 655

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA  +G++  ++A++   D++  T ++ F+    +VT+ QR   K +   + Y
Sbjct: 656 ILAHCSGDEQLIQAYKDARDIHRMTASQVFHTPFEEVTELQRRNAKAVNFGIVY 709


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 86/281 (30%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   + S+   L+ +D + IE RVLA ++ ++  + AF+ G D++ +T  R F +  A+
Sbjct: 637 IRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAE 696

Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R   K +   + Y  G   F  +A   G+                  +DA+N+ 
Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E +P        I T  E + +  R K              F +T       ++ +
Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +              + R+   R     R+ +N+                   +
Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637
           Q  + DIL   M+N  KA  +      ++L VHDEI+ + P
Sbjct: 798 QGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVP 838


>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 862

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 32/158 (20%)

Query: 290 KLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           KLN+     L+  ++ DGR+  +      + TGR S      QN+P              
Sbjct: 569 KLNSTYVEGLIHVIDQDGRIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYE---------- 617

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFE 403
                          +   +R   + ++ + L++ AD + IE RVLA MA ++    A+ 
Sbjct: 618 ---------------MGRAIRKVFVPNDEESLILSADYSQIELRVLAHMADDENMKTAYL 662

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
              D++  T +  FN+   QVTK++R+  K +   + Y
Sbjct: 663 EHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVY 700


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+ +  ++   +V AD + IE RVLA ++ ++  ++AF   ED+++ T +  F V P  V
Sbjct: 633 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 692

Query: 425 TKDQRAIGKVMELALGY 441
           T + R   KV+   + Y
Sbjct: 693 TPEMRRAAKVVNFGIIY 709


>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 849

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 27/149 (18%)

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           L++A+NS  GR+       G + TGR +      QN+P                   +  
Sbjct: 565 LMQAINSVTGRVHSNFIQTGTA-TGRLASAESNLQNIP-------------------VKY 604

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           D   L      +R   I  EG  L+ AD + IE R+LA ++ ++  + AF+   D++  T
Sbjct: 605 DEGRL------IRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQT 658

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            A  F V  +QVT   R+  K +   + Y
Sbjct: 659 AAEIFGVDVSQVTPTMRSQAKAVNFGIIY 687


>gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313]
          Length = 894

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAG 383
           P   + H   +Q +T      +++P+    P+++ +   +R   I S+   L++ AD + 
Sbjct: 615 PYTGKIHSSFNQTVTATGRISSTEPNLQNIPIKLEMGRKIRKVFIPSDENYLLLDADYSQ 674

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA +  ++  + AF   ED++ +T A  F +   +VT   R+  K +   + Y  
Sbjct: 675 IELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGI 734

Query: 444 GAKAFQK 450
           G  +  K
Sbjct: 735 GDFSLAK 741


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IASEG  L+ AD + IE R+LA  A      +AF  G+D++  T ++ F VA   
Sbjct: 725 IRAAFIASEGHILLSADYSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEG 784

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +  D R   K +   + Y  G  +F  +A+  G++
Sbjct: 785 MPSDIRQRAKAINFGIIY--GISSF-GLANQLGIS 816


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 122/310 (39%), Gaps = 48/310 (15%)

Query: 159 EYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           EY   D  VT  ++  L+P            + E+ L  +   +   G  VD  +   L+
Sbjct: 552 EYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLS 611

Query: 209 QIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRV 262
                   +L++E+  L    + L S  +  E L   L L  G   +     T       
Sbjct: 612 HAFAQRTVRLEEEINGLVGHKFNLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLDD 671

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLK---LNTLVEAMNSD-GRLRGTLQFLGASRTGR 318
           L++N+++   A ++ N  +   +   LK    + L   +N++ GR+  T   LGA+ TGR
Sbjct: 672 LAANEEIDGDARRLINTMLEWRQMTKLKSTYTDALPAYINAETGRIH-TSYALGATTTGR 730

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            +      QN+P  ++   E                         +R+  IA +G +L+ 
Sbjct: 731 LASSDPNLQNIPIRTKEGRE-------------------------IRTAFIADKGMQLIS 765

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A      KAF  G D++  T +  F V    +  + R   K +   
Sbjct: 766 ADYSQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFG 825

Query: 439 LGYQGGAKAF 448
           + Y  G  AF
Sbjct: 826 IIY--GISAF 833


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V   E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  
Sbjct: 642 KAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPED 701

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 702 VTPNDRRNAKAVNFGVVY 719


>gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 873

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAG 383
           +  R H   +Q++T      +SDP+ LQ I         +R+      G   LV AD + 
Sbjct: 595 KTKRIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQ 653

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA ++G++  +KAF  G+D++  T A     +   VT ++R+  K +   + Y
Sbjct: 654 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQEDVTSEERSHAKAINFGIIY 711


>gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
          Length = 867

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 114/299 (38%), Gaps = 51/299 (17%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +D+ +   +++  D    KL  ++  ++ G   +    ++L   LF + GL     T
Sbjct: 486 GTEIDLDVLKEMDEAFDETIEKLSNDIYRIS-GTTFNISSPKQLGQVLFEDLGLKGGKKT 544

Query: 256 ET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +T   T Q VL       P    V   RM    S+   L  L E +  D ++  T+    
Sbjct: 545 KTGYSTSQDVLEKIIDAHPVVPLVLEYRMLTKLSSTY-LKGLQEQVFPDNKIH-TIYKQT 602

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P   RS E                          +R   ++  
Sbjct: 603 LTHTGRLSSVDPNLQNIP--VRSEE-----------------------GKLIRKAFVSHN 637

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  LV  D + IE R+LA MA     + AF  G+D++  T A  F V   +VT   R+  
Sbjct: 638 GY-LVSFDYSQIELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQA 696

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
           K +   + Y  G   F +++   G+++                 +A NF     E +PE
Sbjct: 697 KAVNFGIIY--GMSEF-RLSKDIGMSI----------------AEARNFINKYFETYPE 736


>gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
          Length = 878

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q IT      +++P+    P+++ +   +R   +  EG   + AD + IE R
Sbjct: 603 GRIHSTFHQTITATGRISSTEPNLQNIPIRMELGRLIRKVFVPREGCIFLDADYSQIELR 662

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA M+G++  ++A+   +D++  T ++ F+    +VT  QR   K +   + Y
Sbjct: 663 VLAHMSGDEKLIQAYREAQDIHRLTASQVFHTPFEEVTDLQRRNAKAVNFGIVY 716


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 41/85 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +RS  +   G   + AD + IE  VLA MA +     AF  G D++ +T +  F+V   Q
Sbjct: 709 IRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAFAAGIDVHSSTASLIFDVPLDQ 768

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VT  QR I K +   + Y  G  + 
Sbjct: 769 VTPVQRRIAKTINFGVMYGMGTHSL 793


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+ +  ++   +V AD + IE RVLA ++ ++  ++AF   ED+++ T +  F V P  V
Sbjct: 633 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 692

Query: 425 TKDQRAIGKVMELALGY 441
           T + R   KV+   + Y
Sbjct: 693 TPEMRRAAKVVNFGIIY 709


>gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032]
          Length = 880

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L+  +  DGR+  T     AS TGR S      QN+P  + +  +            
Sbjct: 592 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 638

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 639 -------------IRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 685

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               ++ FNV    VT + R   K M   L Y  G  AF
Sbjct: 686 NYVGSKVFNVPIDGVTPELRRQVKAMSYGLVY--GLSAF 722


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 86/281 (30%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   + S+   L+ +D + IE RVLA ++ ++  + AF+ G D++ +T  R F +  A+
Sbjct: 637 IRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAE 696

Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R   K +   + Y  G   F  +A   G+                  +DA+N+ 
Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E +P        I T  E + +  R K              F +T       ++ +
Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +              + R+   R     R+ +N+                   +
Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637
           Q  + DIL   M+N  KA  +      ++L VHDEI+ + P
Sbjct: 798 QGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVP 838


>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 906

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A +   ++ AD + IE R++A ++ ++  L AF   +D++  T +  FN+   +
Sbjct: 670 IRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHDKDVHSVTASTMFNMPINE 729

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           VTK  R   K +   L Y  G  AF
Sbjct: 730 VTKKHRRRSKAINFGLIY--GMSAF 752


>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
 gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
          Length = 949

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 18/174 (10%)

Query: 289 LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------ 341
           + ++ L++++  DGR+  T  Q + A  TGR S      QN+P  + +  E+ Q      
Sbjct: 622 VTVDGLLKSVADDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPVRTAAGREIRQGFIVGA 679

Query: 342 ------IITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
                        S  S PD +   S          +G   L+ AD + IE R++A ++ 
Sbjct: 680 GSGASGDGGVGAGSGASGPDGVGAGSGSSGHDGGTGDGFDCLMTADYSQIEMRIMAHLSE 739

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +   ++AF TGEDL+    +R+F V   +VT + R   K M   L Y  G  AF
Sbjct: 740 DAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTTEMRHRVKAMSYGLAY--GLSAF 791


>gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
 gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
          Length = 559

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           I   +R CV A  G  LVVAD A +E RVLA ++G++ +L       DLY +     F  
Sbjct: 317 IPKLLRGCVRADPGWTLVVADAAQLEPRVLAALSGDR-RLAEVSADADLYTSLTHTLFGR 375

Query: 420 APAQVTKDQRAIGKVMELALGYQG 443
            P    +D RA  K+  L+  Y G
Sbjct: 376 TP---IEDDRARAKIAMLSAMYGG 396


>gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
 gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
          Length = 887

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-Q 423
           ++ V A EG  ++ +D + IE RVLA + G+Q   +AF+ GED++ TT  + F +  A +
Sbjct: 648 QAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDIHATTAVKIFGLKDASE 707

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 708 VTPNIRRQAKAVNFGIVY 725


>gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 930

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIIS--DCVRSCVIASEGKKLVVADLAGIEAR 387
           + H   +Q IT      ++DP+    P+++       +  VI +  +  + AD + IE R
Sbjct: 647 KIHTTYNQTITATGRLSSTDPNLQNIPIKLEEGRKIRKGFVIQNSDQLFLAADYSQIELR 706

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA ++ +   ++AF+  +D++  T A+ F V   QVT++ R+  K +   + Y
Sbjct: 707 ILAHVSEDTNLIQAFQEQQDIHTQTAAQVFEVESTQVTREMRSHAKAVNFGIVY 760


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G  +V  D + +E R+LA +  +   +  + +G DL+    + +F VA  +V+KDQR 
Sbjct: 627 GDGGVIVQFDYSQLELRILAVITQDPTLIDLYRSGADLHKAVASDAFGVAIEEVSKDQRT 686

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             K ++  + YQ  A+   +     G+ ++
Sbjct: 687 ASKKIQFGIVYQESARGLSEDLRAEGITMS 716


>gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R]
 gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 880

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L+  +  DGR+  T     AS TGR S      QN+P  + +  +            
Sbjct: 592 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 638

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 639 -------------IRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 685

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               ++ FNV    VT + R   K M   L Y  G  AF
Sbjct: 686 NYVGSKVFNVPIDGVTPELRRQVKAMSYGLVY--GLSAF 722


>gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513]
 gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513]
          Length = 872

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
           +R H    Q++T      +++P+ LQ I           R+ +  ++   +V AD + IE
Sbjct: 596 NRVHSNFKQMVTSTGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 654

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA ++G++  +++F   ED+++ T +  F V   +VT + R + K +   + Y
Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRVAKAVNFGIIY 710


>gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes]
          Length = 900

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           R S  H  +  I  H P  IT+  +      +I++   R+  ++S+G   + AD + IE 
Sbjct: 571 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 629

Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           R+LA ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G
Sbjct: 630 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 689

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
               +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 690 K---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 723


>gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A +G+ L+ AD + IE  +LA ++ +Q  ++AF  G D++  T +  F V    
Sbjct: 705 IREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIFAVDIKD 764

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           V++D R I K +   + Y  G  AF+  +S
Sbjct: 765 VSQDMRRIAKTINFGVMY--GMSAFRLASS 792


>gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23]
 gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23]
          Length = 888

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423
           ++ V + EG ++  +D + +E RVLA + G++   + F+ GED++ +T  R F++AP A+
Sbjct: 648 KAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAE 707

Query: 424 VTKDQRAIGKVMELALGY 441
           + ++ R   K +   + Y
Sbjct: 708 IDRNMRRRAKAVNFGIVY 725


>gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
 gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
          Length = 888

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423
           ++ V + EG ++  +D + +E RVLA + G++   + F+ GED++ +T  R F++AP A+
Sbjct: 648 KAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAE 707

Query: 424 VTKDQRAIGKVMELALGY 441
           + ++ R   K +   + Y
Sbjct: 708 IDRNMRRRAKAVNFGIVY 725


>gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
 gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
          Length = 740

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q IT      +++P+    P++  +   +R   +  E      AD + IE R+
Sbjct: 466 RIHTSFNQTITATGRISSTEPNLQNIPMRTELGRLIRKVFVPKEDHVFADADYSQIELRI 525

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           LA M+ +Q  + A+  G+D++  T ++ F+V   +VT  QR   K +   + Y
Sbjct: 526 LAHMSEDQELIAAYHEGKDIHGITASKVFHVPFEEVTPLQRRNAKAVNFGIVY 578


>gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
 gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
          Length = 888

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423
           ++ V + EG ++  +D + +E RVLA + G++   + F+ GED++ +T  R F++AP A+
Sbjct: 648 KAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAE 707

Query: 424 VTKDQRAIGKVMELALGY 441
           + ++ R   K +   + Y
Sbjct: 708 IDRNMRRRAKAVNFGIVY 725


>gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 656

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 40/226 (17%)

Query: 218 LDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT------ 270
           L  E+  LT G+ + ++      K +L+ + GL +   TE   +    +  +L       
Sbjct: 252 LKAEINELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTEKNQEAADDAAMQLLEEYCAQ 311

Query: 271 --PQAIQVFNNRMRASRSAVLK---LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVF 324
             P+ +++F       +   LK   ++  ++ +NS  GR+   L  LG + TGRW+    
Sbjct: 312 HRPELVRLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIHPDLMPLG-TDTGRWAARNP 370

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN PR +                     DP+ I     R+ ++A  G+ ++  D + I
Sbjct: 371 NMQNAPRKTN--------------------DPIGI-----RNFIVAPPGQIIMSLDFSQI 405

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           E RV A+   +   L+ + +G D++  T +  F V P +V  D+ A
Sbjct: 406 ELRVGAFYCRDPKMLETYRSGGDIHAQTTSVVFGV-PFEVAVDKNA 450


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 28/165 (16%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I      S  +R   +  E   L+ AD + IE 
Sbjct: 705 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEHWTLLSADYSQIEL 763

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+   +A+  G+D++  T AR   +    V+ D+R +GK +   + Y  GA 
Sbjct: 764 RILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LEKDDVSADERRLGKTINFGVIYGMGA- 820

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             Q+ A  TG++                  DA+ F    +E +P+
Sbjct: 821 --QRFARETGVS----------------QTDAKEFLSKYRERYPK 847


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H      IT      ++DP+ LQ I         +R   IA  GKKL+ AD + I
Sbjct: 687 RDDRVHTSFQMAITSTGRLSSTDPN-LQNIPVRTEEGTRIRQAFIAPSGKKLISADYSQI 745

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           E R+LA +A      +AF+ G+D++  T +  FN+
Sbjct: 746 ELRLLADVANIPALREAFQLGQDIHARTASEVFNI 780


>gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 607

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  GK LV  D + IE R+LA +A      +AF+ G D++  T +  FNV   Q
Sbjct: 367 IRGAFVAPAGKVLVSLDYSQIELRILAQIAQIDALKEAFQQGLDIHAATASEMFNVPLDQ 426

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +T + R   K +   + Y  G  AF
Sbjct: 427 MTPEIRRQAKAINFGVIY--GISAF 449


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R + E  QI        +  P+ LQ I   ++      EG K +VAD + IE R+ A
Sbjct: 319 RNKRVYGEFKQIGAATGRMSSLRPN-LQNIPKNLKYLFKPKEGYKFIVADYSQIELRIAA 377

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
               ++  + AF  G+DL+  T +     +  ++TK++R + K +   L Y    K+  +
Sbjct: 378 QYTKDENMITAFNEGKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLIE 437

Query: 451 MA-STTGLNLN 460
            A +  G+++N
Sbjct: 438 YAKANYGVSIN 448


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 319 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 378

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 379 MPGEVRRRAKAI 390


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 752 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 811

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 812 MPGEVRRRAKAI 823


>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
 gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
 gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
          Length = 871

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A +G KL+ AD + IE R+L+ +A  +   +AF   +D++  T  + FN+   +
Sbjct: 634 IRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIFNLQKEE 693

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +T + R   K +   + Y  G  AF
Sbjct: 694 LTSEHRRKAKAINFGIIY--GISAF 716


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 752 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 811

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 812 MPGEVRRRAKAI 823


>gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99]
          Length = 875

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++ AD + IE RVLA + G+    +AF   ED++ TT  + FNVA  +VT   R   K +
Sbjct: 648 ILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAV 707

Query: 436 ELALGY 441
              + Y
Sbjct: 708 NFGIVY 713


>gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
 gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
          Length = 886

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 38/247 (15%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A  LNQ+ +    KL QELE   Y        L   ++L   LF + GL     T+T   
Sbjct: 507 ASVLNQLGNDFAVKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 565

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A       +  L+E +  DGR+    LQ L A  T
Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLECIQPDGRIHTRYLQTLTA--T 622

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +R++E                          +R   + S     
Sbjct: 623 GRLSSVDPNLQNIP--TRTNE-----------------------GKQIRKAFVPSTKDGY 657

Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
           + + D + +E RVLA ++G++   +AF++G D++  T  + F++ +P +VT   R   K 
Sbjct: 658 IFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKA 717

Query: 435 MELALGY 441
           +   + Y
Sbjct: 718 VNFGIVY 724


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++V T ++ F     +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHVETASKLFKTEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 771 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 831 MPGEVRRRAKAI 842


>gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
 gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
          Length = 881

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V   E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  
Sbjct: 642 KAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPED 701

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 702 VTPNDRRNAKAVNFGVVY 719


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 754 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 813

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 814 MPGEVRRRAKAI 825


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
          Length = 881

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V   E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  
Sbjct: 642 KAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPED 701

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 702 VTPNDRRNAKAVNFGVVY 719


>gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 886

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 38/247 (15%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A  LNQ+ +    KL QELE   Y        L   ++L   LF + GL     T+T   
Sbjct: 507 ASVLNQLGNDFAVKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 565

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A       +  L+E +  DGR+    LQ L A  T
Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLECIQPDGRIHTRYLQTLTA--T 622

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +R++E                          +R   + S     
Sbjct: 623 GRLSSVDPNLQNIP--TRTNE-----------------------GKQIRKAFVPSTKDGY 657

Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
           + + D + +E RVLA ++G++   +AF++G D++  T  + F++ +P +VT   R   K 
Sbjct: 658 IFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKA 717

Query: 435 MELALGY 441
           +   + Y
Sbjct: 718 VNFGIVY 724


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 771 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 831 MPGEVRRRAKAI 842


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EGKKL+  D + IE R+LA  + +   + AF   +D+++ T    F    A 
Sbjct: 670 IREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKDIHLQTAIALFGEEEA- 728

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
               +RA+ K +   L Y  G K   K++ T G+
Sbjct: 729 --PSKRAVAKTVNFGLLYGMGQK---KLSETLGI 757


>gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 880

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 30/149 (20%)

Query: 301 DGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           DGR+ GT  Q + A  TGR S      QN+P           + T + + I         
Sbjct: 604 DGRIHGTFNQTITA--TGRISSTEPNLQNIP-----------VRTEMGSKI--------- 641

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
                R   +   G   V AD + IE RVLA ++G++  ++++ +  D++  T ++ F+V
Sbjct: 642 -----RDIFVPKPGYVFVDADYSQIELRVLASLSGDEKLIESYHSAADIHAATASQVFHV 696

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448
              +VT + R   K +   + Y  G  AF
Sbjct: 697 PLEEVTPELRRNAKAVNFGVVY--GISAF 723


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 12/138 (8%)

Query: 328 NLP-----RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377
           NLP     +  R H   +Q +T      +S P+   I     +S  +R   I+ +   LV
Sbjct: 656 NLPTLVSNQTHRIHTSFNQSVTSTGRLSSSKPNLQNIPIRTELSRKIRKAFISPKKWLLV 715

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA ++ E   +KA+   +D++  +    F+    ++T ++R +GK +  
Sbjct: 716 SADYSQIELRILAHLSQEPLLVKAYCDCQDIHTLSAQLLFD--KEEITIEERNLGKTINF 773

Query: 438 ALGYQGGAKAFQKMASTT 455
            + Y  G++ F + A  T
Sbjct: 774 GVIYGMGSQRFAREAGVT 791


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383
           P+  + H   +Q +T      +++P+   I     +   +R   I      L   AD + 
Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF++G D++  T A+ + +   +VT D R   K     + Y
Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIY 759


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 754 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 813

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 814 MPGEVRRRAKAI 825


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383
           P+  + H   +Q +T      +++P+   I     +   +R   I      L   AD + 
Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF++G D++  T A+ + +   +VT D R   K     + Y
Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIY 759


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +  EG  L+ AD + IE R+LA ++ ++  + AF+   D++  T A  F V  +
Sbjct: 609 LIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668

Query: 423 QVTKDQRAIGKVMELALGY 441
           QVT   R+  K +   + Y
Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  L+ AD + IE R+LA +A +    +AF  G D++  T A+   +A   
Sbjct: 670 IRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREGADIHRRTAAQVLGLAEDA 729

Query: 424 VTKDQRAIGKVMELALGY 441
           +T +QR   K +   + Y
Sbjct: 730 ITPNQRRAAKTVNFGVLY 747


>gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 537

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEG------KKLVVADL 381
            R H    Q I       ++DP+    P++  +   +R   +   G       +L+ AD 
Sbjct: 255 GRIHTTYSQTIAATGRLSSTDPNLQNVPIRTAAGRRIRDAFVVGTGPEGGAYAELMTADY 314

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R++A ++ ++  ++AF +  D +  T AR F V  A V+ +QRA  K M   L Y
Sbjct: 315 SQIEMRIMAHLSEDEALIEAFRSQHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGLAY 374


>gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix
           jacchus]
          Length = 965

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 10/144 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           R S  H  +  I  H P  IT   +      +I++ C R+  ++S+G   + AD + IE 
Sbjct: 634 RLSAKHPNIQGISKH-PIQITKPKNFKGKEDEILTICPRAMFVSSKGHTFLAADFSQIEL 692

Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           R+LA ++G+   LK F+  E  D++ T  ++  +V    VT   R   K +  ++ Y  G
Sbjct: 693 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEHVTHADREQTKKVVYSVVYGAG 752

Query: 445 AKAFQKMASTTGLNLNTFAHLVKT 468
               +++A+  G+ +   A  +++
Sbjct: 753 K---ERLAACLGVPVQEAAQFLES 773


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++ V  S   +++ AD + IE R++A  +G+    +AF  G D++ TT ++ F V   +V
Sbjct: 725 KAFVPDSADFQILSADYSQIELRIMAAFSGDASMTEAFNQGRDIHATTASKVFQVPLEEV 784

Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448
           T D R   K++   + Y  G  AF
Sbjct: 785 TSDMRRKSKMVNFGIIY--GISAF 806


>gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 361

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 2/112 (1%)

Query: 339 LDQIITHLPTSITSDPDPLQ--IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           + ++  + P +++S P P+     + C+R+     +G  ++ AD + +E R+LA +A ++
Sbjct: 55  MTRVGAYTPLTMSSGPTPMPGPKFAVCIRNVFCPFKGGLMLAADYSQLELRLLAHLAKDR 114

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
             +    +G D++    A+  +V    VT +QR   K M   + Y  GA+A 
Sbjct: 115 CLMSILNSGSDVFKQIAAKWKHVDVDSVTAEQRQQAKQMCYGMIYGIGARAL 166


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R    H   +Q +T      +SDP+ LQ I         +R C +  +      AD + I
Sbjct: 643 RTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQI 701

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++G++  ++AF  G D++  T A+ ++   A VT ++R   K     + Y
Sbjct: 702 ELRIMAHLSGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIY 758


>gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 49  IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 108

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 109 MPGEVRRRAKAI 120


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR   +A EG  L+  D + IE R+LA  + ++  +KAF  G+D++  T  + F     Q
Sbjct: 652 VRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDIHYETALKLFG---EQ 708

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
               +R++ K +   L Y  G K   +++ T G+++
Sbjct: 709 EAASKRSVAKSINFGLLYGMGPK---RLSETLGISM 741


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 487 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 546

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 547 MPGEVRRRAKAI 558


>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
 gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
          Length = 943

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 27/165 (16%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + LVE +N++ GR+  +   +GA+ TGR S      QN+P   R+ E             
Sbjct: 653 DALVETINAETGRVHTSYSMVGAA-TGRLSSNDPNLQNIP--IRTEE------------- 696

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R+  +A  G  L+  D + IE R++A +AG +   KAF  G D++ 
Sbjct: 697 ----------GRKIRTAFVAEPGNVLLSVDYSQIELRLVADIAGIESLRKAFLDGIDIHA 746

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            T +  F V  +++T D R   K +   + Y        +  ST+
Sbjct: 747 QTASEVFGVPLSEMTPDIRRKAKAINFGIIYGISGFGLARQLSTS 791


>gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217]
 gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217]
          Length = 936

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A+ G +LV  D + IE R+LA +A  +   +AF  G D++  T +  FNV   Q
Sbjct: 696 IREAFVAASGHRLVSLDYSQIELRILAHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQ 755

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 756 MTPEIRRQAKAINFGVIY 773


>gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
 gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
          Length = 950

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++ ++  ++AF +G D +   
Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 758

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787


>gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
          Length = 950

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++ ++  ++AF +G D +   
Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 758

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787


>gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 886

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 32/216 (14%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSA 287
           ++S++ L K+   LF +  L +   T+T     +   +KL PQA  V N     + S+  
Sbjct: 536 INSTKQLGKI---LFEKLKLPVIKKTKTGYSTAVDVLEKLAPQAPIVENILQYRQISKLQ 592

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ ++S  +   T      ++TGR S      QN+P               LP
Sbjct: 593 STYIKGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIP-------------VRLP 639

Query: 348 TSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                           +R   + S EG ++  +D + +E RVLA + G+    + F+ GE
Sbjct: 640 EG------------RLIRQAFVPSHEGWQIFSSDYSQVELRVLAHITGDHNLQEDFKNGE 687

Query: 407 DLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
           D++ +T  R F++ P Q + ++ R   K +   + Y
Sbjct: 688 DIHASTARRIFHLKPDQEIDRNMRRRAKAVNFGIVY 723


>gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
 gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
          Length = 234

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 54  PQVLKEALENT-DVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLA--RSNGLP 106
           P++++  L+   D  IVAHN+ F+R      L  C   ++P HRWI TL LA  R  G+ 
Sbjct: 74  PEIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWIDTLALAKQRFPGMH 133

Query: 107 SALKAVGEALKLSSQKMEEGKELI 130
           ++L A+ +  K+S  + E+   LI
Sbjct: 134 NSLDALCKRFKISLAEREKHGALI 157


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 6/173 (3%)

Query: 326  PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAG 383
            PQ++  + ++ H   +Q+ T      +  P+  QI     +R   I  +    ++AD   
Sbjct: 1586 PQHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPQKDNIFIIADFRQ 1645

Query: 384  IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            IE ++ A +  +   LKA+    DL+  T +     A A V K+ R I K +   L Y  
Sbjct: 1646 IELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAIADVNKEDRHIAKAINFGLIYGM 1705

Query: 444  GAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                 +  A+T   LN+N    L   NS  E +   +   RW  +     A+E
Sbjct: 1706 NYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHY---KGIYRWHNQIKQMRALE 1755


>gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 45.8 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +Q
Sbjct: 2   IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61

Query: 429 RAIGKVMELALGYQGGAKAF 448
           R   K +   L Y  G  AF
Sbjct: 62  RRSAKAINFGLIY--GMSAF 79


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R    H   +Q +T      +SDP+ LQ I         +R C +  +      AD + I
Sbjct: 643 RTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQI 701

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++G++  ++AF  G D++  T A+ ++   A VT ++R   K     + Y
Sbjct: 702 ELRIMAHLSGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIY 758


>gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 950

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++ ++  ++AF +G D +   
Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 758

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787


>gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8]
          Length = 955

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++ ++  ++AF +G D +   
Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 763

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792


>gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 950

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++ ++  ++AF +G D +   
Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 758

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787


>gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 955

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++ ++  ++AF +G D +   
Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 763

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792


>gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii]
          Length = 241

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASE-GKKLVVADLA 382
           P   + H    Q +T      + DP+ LQ I         +R   +  + G KL  +D +
Sbjct: 42  PETGKIHTRYQQTLTQTGRLSSVDPN-LQNIPIRMEEGRKIRQAFVPQQAGWKLFASDYS 100

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
            IE RVLA ++G++   +AF  G+D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 101 QIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAVNFGVVY 160


>gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bifidobacterium longum DJO10A]
          Length = 682

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 337 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 396

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 397 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 440

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++ ++  ++AF +G D +   
Sbjct: 441 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 490

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 491 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 519


>gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
 gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
          Length = 880

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 107/262 (40%), Gaps = 36/262 (13%)

Query: 188 LDQTIND---RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L Q + D   RG  VDVA    +N ++     +L+ E+++L  G   +    ++L   LF
Sbjct: 485 LAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLA-GQAFNPNSPKQLGEILF 543

Query: 245 LETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
              GL +   T+T   T   VL   K   P    +   R  A       L  L + + +D
Sbjct: 544 ERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQLAKLQGTY-LAGLPKFIQAD 602

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G++  T      ++TGR S      QN+P   R  E                        
Sbjct: 603 GKIH-TRFVQTLTQTGRLSSADPNLQNIP--IRMEE-----------------------G 636

Query: 362 DCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   + SE G +L  AD + IE RVLA ++G+    +AF  G+D++  T  R F +A
Sbjct: 637 RKIRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHAATARRVFGLA 696

Query: 421 PAQ-VTKDQRAIGKVMELALGY 441
             + V  D R   K +   + Y
Sbjct: 697 EDEAVNSDMRRQAKAVNFGIVY 718


>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705]
 gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705]
          Length = 955

 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294
            ED+     +R  S +      A+Q      V N R      A+L+          + TL
Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++A N SD R+  T +   A+ TGR S      QN+P  + +  E               
Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713

Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  EG + L+  D + +E R++A ++ ++  ++AF +G D +   
Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 763

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  + +   Q+T DQR+  K M   L Y
Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA +G  L+ AD + IE R+LA +A  +   +AF  G D++  T ++ F VA   
Sbjct: 726 IRTAFIAPKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEG 785

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +  D R   K +   + Y  G  AF  +A+  G++
Sbjct: 786 MHSDIRRRAKAINFGIIY--GISAF-GLANQLGIS 817


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKL 376
           V P    P   R H    Q+ T      + DP+ LQ I         +R   +   G   
Sbjct: 612 VLPGLVNPGTGRLHTWFSQVGTATGRLSSKDPN-LQNIPIKTEEGRRIREAFVPQRGWWF 670

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE  +LA ++ +    +AF  GED++  T +  F V P  VT +QR I K + 
Sbjct: 671 LSADYSQIELVILAHLSEDPALCRAFREGEDVHRATGSLLFGVPPEAVTPEQRRIAKTIN 730

Query: 437 LALGYQGGAKAFQ 449
             + Y  G  AF+
Sbjct: 731 FGVIY--GMSAFR 741


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 7/144 (4%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +R  L + G  +         P     R    H   +Q +T      +SDP+ LQ I   
Sbjct: 616 VRNILNYRGMKKLLSTYVEALPKLINSRTGHIHTSFNQALTATGRLSSSDPN-LQNIPVR 674

Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R C I  EG     AD + IE R++A ++ +   ++AF  G D++  T A+ +
Sbjct: 675 TDDGKEIRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDNMMEAFREGYDIHRATAAKIW 734

Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441
           + A   VT  QR   K     + Y
Sbjct: 735 HEALDDVTDAQRKKAKQANFGIIY 758


>gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 957

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 19/184 (10%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  +A+EG +++ AD + +E R+LA +A      +AF  G D++  T +  F V    
Sbjct: 714 IRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFAEGVDIHAATASDMFGVPVGA 773

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV-----KTNSAPEEWEDA 478
           V  + R   K +   + Y  G  AF  +A   G+     A  +     +     +  E  
Sbjct: 774 VPGELRRRAKTINFGIVY--GISAF-GLADRLGIGRQEAAEFIARYFERFPGIRDYVEGT 830

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           + FCR       EH     F+ T   RV          VSE      QA    I+   A 
Sbjct: 831 KTFCR-------EHG----FVRTLFGRVCHYPGITSGNVSERMGVERQAVNAPIQGTAAD 879

Query: 539 IARK 542
           I R+
Sbjct: 880 IIRR 883


>gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli]
 gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli]
 gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli]
 gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli]
 gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli]
 gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli]
 gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli]
 gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli]
 gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli]
 gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli]
 gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli]
 gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli]
 gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli]
 gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli]
 gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli]
 gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli]
 gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli]
 gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli]
 gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli]
 gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli]
 gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli]
 gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli]
 gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli]
 gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli]
 gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli]
 gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli]
 gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli]
 gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli]
 gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli]
 gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli]
 gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli]
 gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli]
 gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli]
 gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli]
 gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli]
 gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli]
 gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli]
 gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli]
 gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli]
 gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli]
 gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli]
 gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli]
 gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli]
 gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli]
 gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli]
 gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli]
 gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli]
 gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli]
 gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli]
 gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli]
 gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli]
 gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli]
 gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli]
 gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli]
 gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli]
 gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli]
 gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli]
 gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli]
 gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli]
 gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli]
 gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli]
 gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli]
 gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli]
 gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli]
 gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli]
 gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli]
 gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli]
 gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +Q
Sbjct: 2   IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61

Query: 429 RAIGKVMELALGYQGGAKAF 448
           R   K +   L Y  G  AF
Sbjct: 62  RRSAKAINFGLIY--GMSAF 79


>gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +Q
Sbjct: 2   IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61

Query: 429 RAIGKVMELALGYQGGAKAF 448
           R   K +   L Y  G  AF
Sbjct: 62  RRSAKAINFGLIY--GMSAF 79


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G  +V  D + +E R+L       + +  + +G DL+    + +F VA  +V+KDQR 
Sbjct: 626 GDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRT 685

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             K ++  + YQ  A+   +     G+ ++
Sbjct: 686 ASKKIQFGIVYQESARGLSEDLRAEGITMS 715


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEILIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 44/90 (48%)

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G  +V  D + +E R+L       + +  + +G DL+    + +F VA  +V+KDQR 
Sbjct: 626 GDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRT 685

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             K ++  + YQ  A+   +     G+ ++
Sbjct: 686 ASKKIQFGIVYQESARGLSEDLRAEGITMS 715


>gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702]
          Length = 901

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 29/159 (18%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L+EA+  DGR+  T    GA+ TGR S      QN+P  + +               
Sbjct: 613 IDGLIEAVADDGRIHTTFNQRGAA-TGRLSSSDPNLQNIPVRTEAGRR------------ 659

Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R       G   L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 660 -------------IRGAFRVGTGYATLITADYSQIEMRVMAHLSQDPGLIEAYRAGEDLH 706

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               ++ F+V    VT + R   K M   L Y  G  AF
Sbjct: 707 NYVGSKVFDVPVEHVTPELRRRVKAMSYGLVY--GLSAF 743


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 668 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHAETASKLFKIEEKE 727

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 728 ITPNLRRIAKSINFGIIYR 746


>gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP]
 gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP]
          Length = 897

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 330 PRPSRSHEELDQ--IITHLPTSITSDPDPLQIISD---CVRSCVIASEGKKLVVADLAGI 384
           PR  R H    Q  + T   +S+  +   + I S+    +R   IA  G +LV AD + +
Sbjct: 621 PRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEEGRQIRKGFIADGGFRLVAADYSQL 680

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A +AG++   +AF+ G D++  T A+   +  + V  +QR   K +   + Y
Sbjct: 681 ELRLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDESTVDVNQRRAAKTVNFGVLY 737


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H    Q   +     ++DP+ LQ I         +R   IA EGK L+  D + 
Sbjct: 656 PETGRVHTSYQQTGANTGRLASTDPN-LQNIPVRSEEGRRIREAFIAEEGKVLLSLDYSQ 714

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+LA +A      +AF+ G+D++  T +  F V   ++T + R   K +   + Y
Sbjct: 715 IELRILAHIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIY 772


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 27/151 (17%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L + +N D GR+  +    GAS TGR +      QN+P   RS E             
Sbjct: 644 DALQDHINKDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 687

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +A EGK LV  D + IE R+LA +A      +AF+ G D++ 
Sbjct: 688 ----------GRRIREAFVAEEGKVLVALDYSQIELRILAHIADIPELKQAFKDGIDIHA 737

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  F V   ++T D R   K +   + Y
Sbjct: 738 LTASEMFGVPLDEMTPDIRRQAKAINFGVIY 768


>gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
 gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
          Length = 875

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   +  +G   V AD + IE R
Sbjct: 600 GRIHSKFNQTITATGRISSTEPNLQNIPVRVELGRLIRKVFVPEDGYIFVDADYSQIELR 659

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA  +G+   ++A+   +D++  T ++ F++   +VT  QR   K +   + Y
Sbjct: 660 VLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVTPLQRRNAKAVNFGIVY 713


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +  EG  L+ AD + IE R+LA ++ ++  + AF+   D++  T A  F V  +
Sbjct: 609 LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668

Query: 423 QVTKDQRAIGKVMELALGY 441
           QVT   R+  K +   + Y
Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687


>gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 328 NLPR------PSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLV 377
           +LPR      PS S     Q I+  P  IT+  +      +I++   R+  ++S+G   +
Sbjct: 93  SLPRTGLQKYPSTSEAVNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFL 152

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            AD + IE R+L  ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +
Sbjct: 153 AADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKV 212

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
             A+ Y  G    +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 213 VYAVVYGAGK---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 255


>gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX]
 gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX]
          Length = 929

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII---SDC---VRSCVIASEG-KKLVVADLAGIE 385
            R H    Q +T      +++P+ LQ I   +D    +R   +  EG ++L+ AD + IE
Sbjct: 652 GRIHTTFHQTVTATGRLSSAEPN-LQNIPVRTDAGRRIRRAFVVGEGYEQLLTADYSQIE 710

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            R++A ++ ++  ++AF +G D +    +R F +   QV  + RA  K M   L Y
Sbjct: 711 LRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKAMNYGLAY 766


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 11/133 (8%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----LVVADLAGIEA 386
           R H   +Q  T      +SDP+ LQ +   SD  +   +A + +K    ++ AD + IE 
Sbjct: 626 RVHASFNQTGTATGRLSSSDPN-LQNLPGRSDEGKEIRMAVKPQKDGWYILGADYSQIEL 684

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA +  +   + AF+  +D+++ T  + F V+   +T++ R IGK++  A+ Y  G  
Sbjct: 685 RVLAHITEDPNLINAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFAIVY--GVS 742

Query: 447 AFQKMASTTGLNL 459
            +  +A  TGL++
Sbjct: 743 PYG-LAKRTGLDV 754


>gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
 gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
          Length = 789

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 36/212 (16%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--- 290
           ++L   LF + GL     T+T   T +  L   K   P  +++ +  ++    + LK   
Sbjct: 444 KQLSFILFEKLGLEPAKKTKTGFSTSEEALQELKFKNPGHVELIDYILKYRELSKLKSTY 503

Query: 291 -LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            LN L+  M  D R+  T +  G + TGR S      QN+P  S                
Sbjct: 504 TLN-LLNYMADDKRIHTTFKQTGTA-TGRISSINPNLQNIPVGS---------------- 545

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    I    +R C  A +G + V  D + IE R+LA ++ ++  + AF   ED++
Sbjct: 546 ---------IYGKRIRECFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFINDEDIH 596

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             T    F V   +V    R + K +   + Y
Sbjct: 597 NKTAKEIFGV--EEVDPKHRRLAKAVNFGIIY 626


>gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
 gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
          Length = 853

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 25/139 (17%)

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR +      QN+PRP                    D D  +I     RS      GK 
Sbjct: 553 TGRLNSFKPNGQNVPRP--------------------DNDDFKI-----RSFFAPKPGKI 587

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L   D +G E R++AW + ++  ++ F T  D++  T +       + +TK +R   K  
Sbjct: 588 LFFIDFSGFELRLIAWKSNDEVMIELFNTNGDMHRRTASALTGKPESDITKIERTNAKAG 647

Query: 436 ELALGYQGGAKAFQKMAST 454
              + Y G   A QK   T
Sbjct: 648 NFGIAYGGTEYALQKTFKT 666


>gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2]
 gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2]
          Length = 938

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A +GK +V  D + IE R+LA +AG     +AF  G D++  T +  F+V   +
Sbjct: 698 IREAFVAEDGKVIVSLDYSQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDE 757

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 758 MTPDVRRQAKAINFGVIY 775


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A +G+KL+ AD + IE RVLA MA      +AF  G D++  T +  F V    
Sbjct: 751 IRKAFVADKGRKLISADYSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEG 810

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    R   K +   + Y  G  AF  +A+  GL+       +KT
Sbjct: 811 MDPMVRRRAKAINFGIIY--GISAF-GLAAQLGLSRGEAGDYIKT 852


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +  EG  L+ AD + IE R+LA ++ ++  + AF+   D++  T A  F V  +
Sbjct: 609 LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668

Query: 423 QVTKDQRAIGKVMELALGY 441
           QVT   R+  K +   + Y
Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H      IT      ++DP+ LQ I         +R   IA  GKKL+ AD + I
Sbjct: 655 RNDRVHTSFQMAITSTGRLSSTDPN-LQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQI 713

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           E R+LA +A      +AF+ G+D++  T +  FN+
Sbjct: 714 ELRLLADVANIPALREAFQLGQDIHARTASEVFNI 748


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+    ++G   + AD + IE  +LA ++ ++  ++AF   +D+++ T ++ F V  A 
Sbjct: 682 IRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTHKKDIHIQTASKLFKVDEAN 741

Query: 424 VTKDQRAIGKVMELALGYQGGA 445
           +T   R I K +   + Y+  A
Sbjct: 742 ITPSMRRIAKSINFGIIYRMSA 763


>gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
 gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
          Length = 921

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q +       +SDP+ LQ I         +R   +A +G+K+V  D + I
Sbjct: 644 RTGRVHTSYHQAVAATGRLSSSDPN-LQNIPVRSEEGRKIRQAFLAPKGRKIVACDYSQI 702

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++    AFE G D++  T A  +     +V+ + R   K +   L Y  G
Sbjct: 703 ELRIMAHLSDDKGLTDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIY--G 760

Query: 445 AKAFQKMASTTGL 457
             AF  +A   GL
Sbjct: 761 MSAF-GLAKQLGL 772


>gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13]
          Length = 851

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 31/166 (18%)

Query: 290 KLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           KLN+     L++ +  DGR+    +    +RTGR S      QN+P  +   +E+     
Sbjct: 558 KLNSTYVAGLLKTVAPDGRIHTCFK-QTETRTGRISSTEPNMQNIPVRTELGKEM----- 611

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                               R   +A  G+ L+ AD + IE R+LA +  +    +AF +
Sbjct: 612 --------------------RKFFVAPRGRILLDADYSQIELRILANLCEDANMQQAFLS 651

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           G D++ +T A+ F V    VT   R+  K +   + Y  GA +  +
Sbjct: 652 GADIHASTAAQVFGVPREAVTPQMRSAAKAVNFGIIYGIGAYSLSQ 697


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383
           P+  + H   +Q +T      +++P+   I     +   +R   I      L   AD + 
Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF++G D++  T A+ + +   +VT D R   K     + Y
Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 759


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+ +  S+   L+ AD + IE R++A  + +   +KAF+ GED++ TT ++ + V   QV
Sbjct: 712 RAFIPRSDEFVLLAADYSQIELRIMAEFSQDATMIKAFQNGEDIHATTASKIYKVPLDQV 771

Query: 425 TKDQRAIGKVMELALGY 441
             D R   K     + Y
Sbjct: 772 DSDMRRKAKTANFGIIY 788


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 34/251 (13%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLD-----QELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
           G  +D A  H ++  V++ER  L       EL  + + + S  +  + L   L L +G  
Sbjct: 483 GVGIDPAALHEMS--VELERRILQVSQEIYELAGMQFNISSPKQLGDVLFGKLGLPSGKK 540

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            +    +T   VL       P A +V + R          ++ L + +  DGR+  T   
Sbjct: 541 TKSGGYSTDAEVLEELAAAYPIAARVLDYRTLTKLKGTY-VDALGQLIARDGRIHTTFAQ 599

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A  TGR S                   D  + ++P  I             +R   +A
Sbjct: 600 TVAE-TGRLSSK-----------------DPNLQNIPIRIEE--------GRRIRKAFVA 633

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             G  L+ AD + IE RV+A  +G+    +AF   +D++  T A  F V   QVT + R 
Sbjct: 634 RPGCVLLSADYSQIELRVVAHFSGDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRR 693

Query: 431 IGKVMELALGY 441
             K +   L Y
Sbjct: 694 QAKAVNFGLIY 704


>gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 561

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
           +R H    Q++T      +++P+ LQ I           R+ +  ++   +V AD + IE
Sbjct: 285 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 343

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA ++G++  +++F   ED+++ T A  F V   +VT + R   K +   + Y
Sbjct: 344 LRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGIIY 399


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
          Length = 881

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   +  E    L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  
Sbjct: 639 LIRKAFVPEEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEK 698

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P  VT + R   K +   + Y
Sbjct: 699 PEDVTPNDRRNAKAVNFGVVY 719


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H   +Q +T      +SDP+ LQ I         +R C I         AD + I
Sbjct: 668 RTGRIHTSFNQALTATGRLSSSDPN-LQNIPVRTDDGKEIRKCFIPEPECVFFSADYSQI 726

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  ++AF +G D++  T A+ +++    VT  QR   K     + Y
Sbjct: 727 ELRIMAHLSKDENMIEAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANFGIIY 783


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +GKKL+ AD + IE RVLA MA      +AF  G D++  T +  F V    
Sbjct: 737 IRQAFIAEKGKKLISADYSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEG 796

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    R   K +   + Y  G  AF  +A+  G+        +KT
Sbjct: 797 MDPMVRRRAKAINFGIIY--GISAF-GLANQLGIARGEAGDYIKT 838


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   I         AD + IE R++A ++G++  L+AF +G D++  T A+ + +   +
Sbjct: 710 IRKAFIPDADCLFFSADYSQIELRIMAHLSGDKNMLEAFNSGHDIHTATAAKIYKIPLEE 769

Query: 424 VTKDQRAIGKVMELALGY 441
           VT D R   K     + Y
Sbjct: 770 VTSDMRRKAKTANFGIIY 787


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383
           P+  + H   +Q +T      +++P+   I     +   +R   I      L   AD + 
Sbjct: 646 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQ 705

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF++G D++  T A+ + +   +VT D R   K     + Y
Sbjct: 706 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 763


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A +G KL+ AD + IE RVLA MA      KAFE G D++  T +  F      
Sbjct: 550 IRQAFVAEKGMKLISADYSQIELRVLAHMADIPQLKKAFEEGLDIHAMTASEMFGTPIEG 609

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    R   K +   + Y  G  AF  +A+  G++    +  +KT
Sbjct: 610 MDPMVRRQAKAINFGIIY--GISAF-GLAAQLGISRGEASDYIKT 651


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383
           P+  + H   +Q +T      +++P+   I     +   +R   I      L   AD + 
Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF++G D++  T A+ + +   +VT D R   K     + Y
Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 759


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G KL+ AD + IE RVLA MA      KAF+ G D++  T +  F      
Sbjct: 753 IRKAFIAEKGHKLISADYSQIELRVLAHMADIPQLKKAFDDGLDIHAMTASEMFGTPIEG 812

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    R   K +   + Y  G  AF  +A+  G++       +KT
Sbjct: 813 MDPMVRRRAKAINFGIIY--GISAF-GLANQLGISRGEAGDYIKT 854


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A +G KLV  D + IE RVLA+ +G++    A++ G+DLY    ++ + V    
Sbjct: 461 IRKIFKARDGYKLVGGDFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVYGVPYED 520

Query: 424 V------------TKDQRAIGKVMELALGYQGGAKAF 448
                         K +R   K + L + Y+ GA+A 
Sbjct: 521 CREFYPDGTVNPEGKHRRTTMKSVLLGIMYERGAQAI 557


>gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
 gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
          Length = 880

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ SDG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIASDGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383
           P+  + H   +Q +T      +++P+   I     +   +R   I      L   AD + 
Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQ 701

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++G+   ++AF++G D++  T A+ + +   +VT D R   K     + Y
Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 759


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+    ++G   + AD + IE  +LA ++ ++  ++AF   +D+++ T ++ F V  A 
Sbjct: 682 IRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTHKKDIHIQTASKLFKVDEAN 741

Query: 424 VTKDQRAIGKVMELALGYQGGA 445
           +T   R I K +   + Y+  A
Sbjct: 742 ITPSMRRIAKSINFGIIYRMSA 763


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D++  T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728

Query: 424 VTKDQRAIGKVMELALGYQ 442
           +T + R I K +   + Y+
Sbjct: 729 ITPNLRRIAKSINFGIIYR 747


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   AHL K+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++ +   +KAF + ED++  T +  F+V   QV+ +QR   K +   
Sbjct: 668 ADYSQIELRLLAHLSEDPVLIKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFG 727

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L Y  G +AF  +A   G++  T A  ++
Sbjct: 728 LIY--GQQAF-GLAHELGIDTKTAAAFIQ 753


>gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1264

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 316  TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S CV P  QNLPR                  ITS  +  +      R C +A+ G 
Sbjct: 982  TGRLS-CVEPNLQNLPR----------------NGITSTEEEGEEDLLGFRRCFVAAAGC 1024

Query: 375  KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             L+  D   IE RVLA + G+   +KA  +  D++ T     F   P  V+ ++R++ K 
Sbjct: 1025 VLLSIDYQQIELRVLAHLCGDPALVKALTSSADIHQTIAEVVFKKKP--VSTEERSLAKR 1082

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK--TNSAP 472
            +   + Y  G K    +A+  G+ ++   H+    TN+ P
Sbjct: 1083 VVFGVLYGAGPKT---LATHMGVTVDRALHITSLLTNAFP 1119


>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
 gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
          Length = 891

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 32/210 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+  LF E G+     T+T       + + L  +    F   + A R  V +L   VE
Sbjct: 546 KQLQVVLFDELGMPRTKRTKTGYTTDADALQGLFAKTQHPFLEHLLAHRD-VTRLRQTVE 604

Query: 297 AMNS----DGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            +      DGR+  T  Q + A  TGR S      QN+P  + S   + +          
Sbjct: 605 GLQKTVAPDGRIHTTYAQTIAA--TGRLSSADPNLQNIPIRTESGRRIREAF-------- 654

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      CV         + L+ AD + IE R++A ++ +   ++AF TGED +  
Sbjct: 655 -----------CVGPGF-----ETLLTADYSQIEMRIMAHLSEDAGLIEAFRTGEDFHTV 698

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             A+ F+  P  +    RA  K M   L Y
Sbjct: 699 MAAKVFDRDPGDIDGGLRARIKAMNYGLAY 728


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   AHL K+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741


>gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
 gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
          Length = 872

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q IT      +++P+    P+++ +   +R   I  +G   V AD + IE R
Sbjct: 597 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEDGYVFVDADYSQIELR 656

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA  +G++  + A++   D++  T ++ F+    +VT  QR   K +   + Y  G  +
Sbjct: 657 ILAHCSGDEQLINAYKEARDIHRITASQVFHTPFEEVTDLQRRNAKAVNFGIVY--GISS 714

Query: 448 F 448
           F
Sbjct: 715 F 715


>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
 gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
          Length = 948

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R  R H    Q         +SDP+ LQ I         VR   +A  G  LV AD + I
Sbjct: 672 RTGRVHTHYSQAAVVTGRLASSDPN-LQNIPVRTEAGRRVREAFVAEHGV-LVSADYSQI 729

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ +    +AF  G+D++  T +  F VA  +V  DQR   K +   L Y  G
Sbjct: 730 ELRIMAHVSDDANLQQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIY--G 787

Query: 445 AKAFQKMASTTGLN 458
              F  +AS  G+ 
Sbjct: 788 MGVF-GLASNLGIT 800


>gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
 gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
          Length = 884

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASE-GKKLVVADLA 382
           P  S+ H    Q +T      + DP+ LQ I         +R   I S  G ++  +D +
Sbjct: 606 PDDSKVHTRYLQTLTQTGRLSSVDPN-LQNIPVRSEEGRLIRQAFIPSHPGWQIFSSDYS 664

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
            IE RVLA +  +Q    AF+ GED++ TT  R F + +  +VT + R   K +   + Y
Sbjct: 665 QIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQAKAVNFGIVY 724

Query: 442 QGGAKAFQKMASTTGL 457
             G   F  +AS TG+
Sbjct: 725 --GISDF-GLASNTGI 737


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 110/485 (22%), Positives = 177/485 (36%), Gaps = 105/485 (21%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT------ 67
           +D    G+  Y +D  + L  FG   +P E W      V+P     A     VT      
Sbjct: 40  LDTETTGLNIYQDDFGIRLIQFG---NPWESW------VLPVERGGAFVGAAVTALQKVQ 90

Query: 68  -IVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL--PSALKAVGEALKL----- 118
             V HN+ F+  V++    L +P+ + W         + L  P A K  G   KL     
Sbjct: 91  RFVIHNAAFDLQVIERT--LGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTK 148

Query: 119 ---SSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                   EE K  +AR  K           L D + P++         Y   D  +   
Sbjct: 149 FYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYEL-------YAGMDTILVSR 201

Query: 171 IFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +  ++ PL  +        E +L  +   +   G+ +DV  +  L+  + + +++    +
Sbjct: 202 LLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADM-LRKSEHYTAV 260

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
               YG V S    EKL   L   TG+ ++  T T  ++V   N +L     +  N   +
Sbjct: 261 ARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQV---NAELLEALAEEGNALAK 315

Query: 283 ASRSAV-------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           A+  A          +   +E  +++ R+   +  L A RT R S      QNLP     
Sbjct: 316 AAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLP----- 369

Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                    +D  VR C +A  G+ +V  D    E RVLA +A 
Sbjct: 370 ------------------------ANDWMVRRCFLADPGQLMVSVDYQAQELRVLAALAN 405

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AFE   DL+  T         A      R +GK+      Y GGA    K+A+ 
Sbjct: 406 DRTMIRAFEEEADLHQVT---------ADAAGMDRKVGKMANFLTVYGGGAG---KLATN 453

Query: 455 TGLNL 459
            G+  
Sbjct: 454 AGITF 458


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
           +R H    Q++T      +++P+ LQ I           R+ +  ++   +V AD + IE
Sbjct: 557 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 615

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA ++G++  +++F   ED+++ T A  F V   +VT + R   K +   + Y
Sbjct: 616 LRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGIIY 671


>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
 gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
          Length = 946

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 121/303 (39%), Gaps = 54/303 (17%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLN 208
           EY   D  VT  +++ L+P  S+E          + L  +   +   G  VD A    L+
Sbjct: 511 EYAAEDADVTLRLYRMLKPRLSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARLAKLS 570

Query: 209 QIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV--- 262
           +        L++E+  +    + + S  +  E L   +  + G   +    +T Q V   
Sbjct: 571 EEFATTTASLEKEIHEIAGQQFAVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQSVLEN 630

Query: 263 LSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
           L+ ++   P A +V      ++++++ +  L+     E     GR+  +   +GA +TGR
Sbjct: 631 LAKDEAAKPIADKVLEWRHLSKLKSTYTDALQAQINPET----GRVHTSYSLVGA-QTGR 685

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            S      QN+P           I T               I   +R   +  +G  L+ 
Sbjct: 686 LSSTDPNLQNIP-----------IRTE--------------IGRTIREAFVPEDGNVLLA 720

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+ A MA      +AF  GED++  T    F     +VT+D RA  K +  A
Sbjct: 721 ADYSQIELRLAAHMADVDTLKEAFANGEDIHARTATEMF----GEVTRDTRARAKTINFA 776

Query: 439 LGY 441
           + Y
Sbjct: 777 ILY 779


>gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON]
 gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON]
          Length = 850

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383
           P   + H + +Q +T      +++P+   I     +   +R   + S    L++ AD + 
Sbjct: 571 PITHKIHSKFNQTVTVTGRISSTEPNLQNIPVKTELGHQIRKAFVPSSSDYLLLDADYSQ 630

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA M+ +Q  + AF  G+D++  T +  F +   QVT   R+  K +   + Y
Sbjct: 631 IELRVLAHMSQDQNMIDAFLKGQDIHARTASEVFGIPLEQVTPLMRSRAKAVNFGIVY 688


>gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 875

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++ AD + IE RVLA + G+    +AF   ED++ TT  + FNVA  +VT   R   K +
Sbjct: 648 ILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAV 707

Query: 436 ELALGY 441
              + Y
Sbjct: 708 NFGIVY 713


>gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
 gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
          Length = 873

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q IT      +++P+    P+++ +   +R   +  +G   + AD + IE R+
Sbjct: 599 RIHSTFNQTITATGRISSTEPNLQNIPIRMELGRKIRKVFVPEDGFIFMDADYSQIELRL 658

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA M+G+   ++A+    D++  T ++ F     +VT  QR+  K +   + Y  G  +F
Sbjct: 659 LAHMSGDDTLIEAYNEDRDIHKITASKVFKTPLDEVTPRQRSNAKAVNFGIVY--GISSF 716


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 110/485 (22%), Positives = 177/485 (36%), Gaps = 105/485 (21%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT------ 67
           +D    G+  Y +D  + L  FG   +P E W      V+P     A     VT      
Sbjct: 40  LDTETTGLNIYQDDFGIRLIQFG---NPWESW------VLPVERGGAFVGAAVTALQKVQ 90

Query: 68  -IVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL--PSALKAVGEALKL----- 118
             V HN+ F+  V++    L +P+ + W         + L  P A K  G   KL     
Sbjct: 91  RFVIHNAAFDLQVIERT--LGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTK 148

Query: 119 ---SSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                   EE K  +AR  K           L D + P++         Y   D  +   
Sbjct: 149 FYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYEL-------YAGMDTILVSR 201

Query: 171 IFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +  ++ PL  +        E +L  +   +   G+ +DV  +  L+  + + +++    +
Sbjct: 202 LLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADM-LRKSEHYTAV 260

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
               YG V S    EKL   L   TG+ ++  T T  ++V   N +L     +  N   +
Sbjct: 261 ARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQV---NAELLEALAEEGNALAK 315

Query: 283 ASRSAV-------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           A+  A          +   +E  +++ R+   +  L A RT R S      QNLP     
Sbjct: 316 AAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLP----- 369

Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                    +D  VR C +A  G+ +V  D    E RVLA +A 
Sbjct: 370 ------------------------ANDWMVRRCFLADPGQLMVSVDYQAQELRVLAALAN 405

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AFE   DL+  T         A      R +GK+      Y GGA    K+A+ 
Sbjct: 406 DRTMIRAFEEEADLHQVT---------ADAAGMDRKVGKMANFLTVYGGGAG---KLATN 453

Query: 455 TGLNL 459
            G+  
Sbjct: 454 AGITF 458


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  GKKL+  D + IE R+LA  + +   + AF  G D+++ T    F    A+
Sbjct: 674 IREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNEGHDIHMQTAIALFG---AE 730

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
               +R I K +   L Y  G K   K++ T G+
Sbjct: 731 DASRKRNIAKTVNFGLLYGMGQK---KLSDTLGI 761


>gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18]
 gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18]
          Length = 890

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 614 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 673

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 674 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
           +R H    Q++T      +++P+ LQ I           R+ +  ++   +V AD + IE
Sbjct: 596 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 654

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA ++G++  +++F   ED+++ T A  F V   +VT + R   K +   + Y
Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGIIY 710


>gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4]
 gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4]
          Length = 884

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   I S EG  +  AD + IE 
Sbjct: 608 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIEL 667

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 668 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 722


>gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3]
 gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3]
          Length = 890

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 614 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 673

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 674 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
          Length = 1036

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +RS   A EG   +  D + IE R++A ++ +   L+AF    D++  T +  F    ++
Sbjct: 797 IRSAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLEAFNNDFDVHTHTASLVFETELSE 856

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQK 450
           VTK QR   K +   + +  G     K
Sbjct: 857 VTKQQRYAAKAVNFGIMFGQGPYGLAK 883


>gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis]
          Length = 241

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382
           P   + H    Q +T      + DP+ LQ I           ++ V   EG KL  +D +
Sbjct: 42  PETGKIHTRYQQTLTQTGRLSSVDPN-LQNIPIRMEEGRKIRQAFVPQQEGWKLFASDYS 100

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            IE RVLA ++G++   +AF  G+D++ +T    F +  P  VT + R   K +   + Y
Sbjct: 101 QIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAVNFGVVY 160


>gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 921

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 31/151 (20%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L+  +N + GR+  +   +GA +TGR S      QN+P               + T I
Sbjct: 634 DALIGKINPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIP---------------IRTEI 677

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             +          +R+  IA +G  L+ AD + IE R+ A +A E+  L+AF+  ED++ 
Sbjct: 678 GRE----------IRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHA 727

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T  + F      V ++ RA  K +  A+ Y
Sbjct: 728 LTAKQLFG----HVDRESRARAKTINFAILY 754


>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
 gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
          Length = 875

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAGIEA 386
           ++ H   +Q +T      ++DP+    P+++     +R   I SE   L+  AD + IE 
Sbjct: 599 NKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSEKNWLMFAADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +AG++  + AF  G D++  T    F+V    VT + R   K +   + Y
Sbjct: 659 RVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAVNFGIVY 713


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
          Length = 878

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%)

Query: 237 EKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++L T LF + GL LE   +T     T   VL     + P   ++   R      +   +
Sbjct: 532 KQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVV 591

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L +A+  DG++  T      ++TGR S      QN+P        L+Q          
Sbjct: 592 G-LQDAILEDGKIH-TRYVQDLTQTGRLSSTDPNLQNIPV------RLEQ---------- 633

Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       +R   + S E   L+ +D + IE RVLA ++ +Q  ++AF+ G D++ 
Sbjct: 634 ---------GRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHT 684

Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
           +T  R F +  A+ VT + R   K +   + Y
Sbjct: 685 STAMRVFGIEKAEYVTPNDRRNAKAVNFGVVY 716


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V ++E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 700 VTPNDRRNAKAVNFGIVY 717


>gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29]
 gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29]
          Length = 890

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 614 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 673

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 674 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728


>gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17]
 gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17]
          Length = 877

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   I S EG  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 715


>gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
 gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
          Length = 877

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   I S EG  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 715


>gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 874

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 27/152 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++A+  +GR+  T +   AS TGR S      QN+P  + +  +            
Sbjct: 588 IEGLIKAVADNGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 634

Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS      G + L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 635 -------------IRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDLH 681

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
               +R F+V   QVT + R   K M   L Y
Sbjct: 682 NFVGSRVFDVPIDQVTPELRRRVKAMSYGLVY 713


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
          Length = 879

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V ++E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 700 VTPNDRRNAKAVNFGIVY 717


>gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44]
 gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44]
          Length = 884

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   I S EG  +  AD + IE 
Sbjct: 608 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSTEGWVMYAADYSQIEL 667

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 668 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFGIVY 722


>gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens]
          Length = 900

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           R S  H  +  I  H P  IT+  +      +I++   R+  ++S+G   + AD + IE 
Sbjct: 571 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 629

Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           R+L  ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G
Sbjct: 630 RILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 689

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
               +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 690 K---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 723


>gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b]
 gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b]
          Length = 864

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 122/313 (38%), Gaps = 91/313 (29%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R    ASE G  L   D + IE R++A M+ ++  + AF   ED++ +T A  F V+  
Sbjct: 624 IRKAFTASEPGWVLYAVDYSQIELRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAE 683

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT   R   K +   + Y           S  GL+ N    L  T       ++A+ F 
Sbjct: 684 EVTSLMRRQAKAVNFGIIYG---------ISDYGLSQN----LGITR------KEAQTFI 724

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E  P       F+  A ER ++                   F +T       + ++
Sbjct: 725 DTYFEQFPGVKT---FMDAAIERARE-----------------HGFVET-------MLKR 757

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR++P ++               R+   R     R+ +NT                   +
Sbjct: 758 RRNIPDIH--------------SRNFNLRGFA-ERTAINTP------------------I 784

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS--N 654
           Q  + DI+ + M      +NA+K    ++L VHDE++ E P T+E  A  L  L+T    
Sbjct: 785 QGTAADIIKKAMIDVDHALNASKLQSKLLLQVHDELIFEGP-TEEMEA--LEKLVTEAME 841

Query: 655 PSWAKGLPLKAEG 667
            +    +PL+A+G
Sbjct: 842 QTVTLDVPLRADG 854


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   AHL K+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741


>gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 873

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVA-DLAG 383
           P   R H   +Q+ T      ++DP+   I     +   +R   +  +G  L+++ D + 
Sbjct: 594 PNTGRIHTHFNQMATVTGRLSSTDPNLQNIPTRTEVGKQMRRMFVPGKGYDLLMSCDYSQ 653

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +E RV+A +AG++  + AF  G+D++  T +  F V    VT   R+  K +   + Y
Sbjct: 654 VELRVMASIAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGIIY 711


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   AHL K+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   IA  GK L+VAD   +E R+LA M+G +  L+AFE G D +  T   + N+ P
Sbjct: 522 IRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRT---ALNMYP 576


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   IA  GK L+VAD   +E R+LA M+G +  L+AFE G D +  T   + N+ P
Sbjct: 522 IRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRT---ALNMYP 576


>gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii]
          Length = 1585

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 14/160 (8%)

Query: 331  RPSRSHEELDQIITH-----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            R S  H  +  I  H      P +     D    IS   R+  ++S+G   + AD + IE
Sbjct: 1256 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKTLTISP--RAMFVSSKGHTFLAADFSQIE 1313

Query: 386  ARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
             R+LA ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  
Sbjct: 1314 LRILAHLSGDPELLKLFQEAERDDVFSTLTSQWKDVPMEQVTHADREQTKKVVYAVVYGA 1373

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            G    +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 1374 GK---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 1408


>gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
 gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
          Length = 905

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380
           P+      R H   +QI T      +SDP+    P++      +R   +A +   L+  D
Sbjct: 622 PKLRDEKDRVHTTFNQIGTTTGRLSSSDPNLQNIPVKTDEGIKIRQGFVAEKNSVLMGID 681

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + IE RVLA ++G++   +A++   DL+  T  + F ++   +V++++R I K +  ++
Sbjct: 682 YSQIELRVLAQLSGDENLREAYQNSMDLHSLTARKIFELSDEEEVSREERIIAKTINFSI 741

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G  AF  +A   G++    +  +  +    ++   + F + + E   +H   + F 
Sbjct: 742 IY--GKTAFG-LAKELGISQKEASEYI--DRYFNQYPKVKGFEKEIVEFTEKHGYTETFF 796

Query: 500 G 500
           G
Sbjct: 797 G 797


>gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28]
 gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28]
          Length = 890

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 614 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIIYAADYSQIEL 673

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 674 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728


>gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens]
 gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu
 gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens]
 gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct]
          Length = 900

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           R S  H  +  I  H P  IT+  +      +I++   R+  ++S+G   + AD + IE 
Sbjct: 571 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 629

Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           R+L  ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G
Sbjct: 630 RILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 689

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
               +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 690 K---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 723


>gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem]
 gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem]
          Length = 608

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 116/494 (23%), Positives = 178/494 (36%), Gaps = 111/494 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET      T  GI  Y  D  + L  FG   +P E W      V+P     A   
Sbjct: 38  LGLDTET------TDLGI--YKPDFGIRLIQFG---NPWESW------VLPVERGGAFVG 80

Query: 64  TDVT-------IVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL--PSALKAVG 113
             VT        V HN+ F+  V++    L +P+ + W         + L  P A K  G
Sbjct: 81  AAVTALQKVQRFVIHNAAFDLQVIERT--LGVPMEQMWPKVEDTKIYSHLVDPRAYKEGG 138

Query: 114 EALKL--------SSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEY 160
              KL             EE K  +AR  K           L D + P++         Y
Sbjct: 139 TGHKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYEL-------Y 191

Query: 161 CKGDVTVTREIFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
              D  +   +  ++ PL  +        E +L  +   +   G+ +DV  +  L+  + 
Sbjct: 192 AGMDTILVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADM- 250

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
           + + +    +    YG V S    EKL   L   TG+ ++  T T  ++V   N +L   
Sbjct: 251 LRKAEHYTAVARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQV---NAELLEA 305

Query: 273 AIQVFNNRMRASRSAV-------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             +  N   +A+  A          +   +E  ++D R+   +  L A RTGR S     
Sbjct: 306 LAEEGNALAKAAIEAKKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTGRMSTSNPS 364

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QNLP                                 VR C +A  G+ +V  D    E
Sbjct: 365 AQNLPSGDW----------------------------MVRRCFLADPGQLMVSVDYQAQE 396

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA +A ++  ++AFE   DL+  T         A      R +GK+      Y GGA
Sbjct: 397 LRVLAALANDRTMIRAFEEEADLHQVT---------ADAAGMDRKVGKMANFLTVYGGGA 447

Query: 446 KAFQKMASTTGLNL 459
               K+A+  G+  
Sbjct: 448 G---KLATNAGITF 458


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAGI 384
           R  + H   +Q  T      +S+P+    P+++ +   +R   I S G   +V AD + I
Sbjct: 553 RTGKLHTTFNQTGTLTGRLASSEPNLQNIPIRLELGRKLRKMFIPSPGYDYIVSADYSQI 612

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+LA  + E   ++A++ GED++  T +  F V+  +VT + RA  K +   + Y
Sbjct: 613 ELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVNFGIVY 669


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   AHL K+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741


>gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 330

 Score = 44.7 bits (104), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 41/175 (23%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSI 350
           + L   ++ DGRLRG    +G ++T R S C  P  Q++P+  + + +            
Sbjct: 59  DKLKNQLSKDGRLRGHWNLIG-TKTSRMS-CQKPNFQSIPKEMKKYFQ------------ 104

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                              A E    ++ D + IE R+LA +   Q  + AF  G DL+V
Sbjct: 105 -------------------AEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHV 145

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---QKMASTTGLNLNTF 462
            T     N     ++  +R +GKV+   L Y  G   F   +K+ +  G N++ +
Sbjct: 146 ETAKAILN--QESISDSERKLGKVVNFGLIY--GLTPFGLKEKINAIPGFNISEY 196


>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC]
 gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC]
          Length = 869

 Score = 44.7 bits (104), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLV 377
            P Q  P  SR H   +Q+ T        DP+   I     R  ++        +    +
Sbjct: 586 LPRQVDPSTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCNTHQNNYFL 645

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R LA ++ ++    AFE+ ED++  T ++ F+V   +VTK QR   K +  
Sbjct: 646 SADYSQIELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVNF 705

Query: 438 ALGYQGGAKAFQKM 451
            + Y   A    K+
Sbjct: 706 GIIYGQQAYGLSKI 719


>gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678]
          Length = 880

 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 40/240 (16%)

Query: 215 RTKLDQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET-----TCQRVL 263
           +T+ ++ LESLT   Y L      +   ++L T LF + GL LE   +T     T   VL
Sbjct: 506 QTENEKTLESLTQEIYDLAGQEFNINSPKQLGTVLFEDMGLPLEYTKKTKTGYSTAVDVL 565

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                + P   ++   R + S+     +  L EA+ +DG++  T      ++TGR S   
Sbjct: 566 ERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQDLTQTGRLSSVD 623

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLA 382
              QN+P        L+Q                      +R   +       L+ +D +
Sbjct: 624 PNLQNIPV------RLEQ-------------------GRLIRKAFVPEWADSVLLSSDYS 658

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
            IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R   K +   + Y
Sbjct: 659 QIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVY 718


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%)

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA ++ ++  LKAF+   D++  T A+ F V+   V++  R +GK++  A
Sbjct: 671 ADYSQIELRVLAHVSKDENLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFA 730

Query: 439 LGY 441
           + Y
Sbjct: 731 IIY 733


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 27/151 (17%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L + +N D GR+  +    GAS TGR +      QN+P   RS E             
Sbjct: 645 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 688

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +A  GK LV  D + IE R+LA +A      +AF+ G D++ 
Sbjct: 689 ----------GRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELKQAFQDGIDIHA 738

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  F V   ++T D R   K +   + Y
Sbjct: 739 LTASEMFGVPLDEMTSDVRRQAKAINFGVIY 769


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 27/151 (17%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L + +N D GR+  +    GAS TGR +      QN+P   RS E             
Sbjct: 645 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 688

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +A  GK LV  D + IE R+LA +A      +AF+ G D++ 
Sbjct: 689 ----------GRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELKQAFQDGIDIHA 738

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T +  F V   ++T D R   K +   + Y
Sbjct: 739 LTASEMFGVPLDEMTSDVRRQAKAINFGVIY 769


>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 867

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 364 VRSCVIASEG---KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
           +RS   A++    + L+  D + IE R++A ++G++  ++AF+ GEDL+     + F V 
Sbjct: 624 IRSVFQAAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVP 683

Query: 421 PAQVTKDQRAIGKVMELALGY 441
              VT  QR+  K M   L Y
Sbjct: 684 IEDVTDQQRSKVKAMSYGLVY 704


>gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens]
          Length = 891

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           R S  H  +  I  H P  IT+  +      +I++   R+  ++S+G   + AD + IE 
Sbjct: 571 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 629

Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           R+L  ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G
Sbjct: 630 RILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 689

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
               +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 690 K---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 723


>gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens]
          Length = 579

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           R S  H  +  I  H P  IT+  +      +I++   R+  ++S+G   + AD + IE 
Sbjct: 204 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 262

Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           R+L  ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G
Sbjct: 263 RILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 322

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
               +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 323 K---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 356


>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 921

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 31/151 (20%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L+  +N + GR+  +   +GA +TGR S      QN+P               + T I
Sbjct: 634 DALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIP---------------IRTEI 677

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             +          +R+  IA +G  L+ AD + IE R+ A +A E+  L+AF+  ED++ 
Sbjct: 678 GRE----------IRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHA 727

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T  + F      V ++ RA  K +  A+ Y
Sbjct: 728 LTAKQLFG----HVDRESRARAKTINFAILY 754


>gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa]
          Length = 1413

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 341  QIITHLPTSITSDPDPLQIISDCV----RSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            Q I+ LP  I +  +      D +    RS  ++ EG+  + AD + IE R+LA ++G+ 
Sbjct: 1079 QGISKLPIQIGAPRNAKGEAGDALTVSARSLFVSPEGRSFLAADFSQIELRILAHLSGDP 1138

Query: 397  WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
              LK F+  E  D++    ++   ++P  VT+  R   K +  A+ Y  G    +++A+ 
Sbjct: 1139 ELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVVYGAGR---ERLAAC 1195

Query: 455  TGLNLNTFAHL 465
             G+ L   A  
Sbjct: 1196 LGVTLREAARF 1206


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+C ++ +G   V  D + IE R+LA  + ++  L+AF   ED++  T    F  +   
Sbjct: 644 MRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFREDEDIHSRTAISIFGTS--- 700

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             K++RA+ K +   L Y  GA    K+++  G+
Sbjct: 701 -DKEKRAVAKTINFGLIYGMGA---SKLSNELGI 730


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 38/277 (13%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           KR +     E+ L ++   +  RG  +D A    L+  +     +LD  ++ L  G   S
Sbjct: 451 KRAQLYKDVERPLAHVLARMEVRGVRLDSAYLRGLSDSLGARAQELDARIQELA-GHPFS 509

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRV--------LSSNKKLTPQAIQVFNNRMRAS 284
               ++L++ L+ E GL     T+ T +R         L     + P  ++ +    +  
Sbjct: 510 VNSRDQLESVLYDELGLASGKKTKLTGKRSTAVSALEPLRDEHPIIPLLLE-YRELTKLK 568

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
            + +  L  LV  +   GRL  T      + TGR S      QN+P  S +  E      
Sbjct: 569 GTYLDPLPNLVNPLT--GRLHTTFAQTAVA-TGRLSSLNPNLQNIPIRSETGRE------ 619

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R   IA +G  L+ AD + IE R+LA +A +    +AF  
Sbjct: 620 -------------------IRKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVG 660

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           G D++  T A+   V    VT +QR   K +   + Y
Sbjct: 661 GADIHRRTAAQVLGVMEDLVTPNQRRAAKTVNFGVLY 697


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V ++E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 700 VTPNDRRNAKAVNFGIVY 717


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 1/122 (0%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R + E  QI        +  P+ LQ I   ++      EG K +VAD + IE R+ A
Sbjct: 320 RNERVYGEFKQIGAATGRMSSLRPN-LQNIPKNLKYLFKPKEGYKFIVADYSQIELRIAA 378

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
               ++  + AF  G+DL+  T +     +  ++TK++R + K +   L Y    K+  +
Sbjct: 379 QYTKDENMITAFNEGKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLVE 438

Query: 451 MA 452
            A
Sbjct: 439 YA 440


>gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri]
          Length = 869

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           V++S    L+  D + IE R+LA M+ +Q  + AF   ED++  T  + FN++  ++T +
Sbjct: 634 VVSSPDNILLSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKDEITPN 693

Query: 428 QRAIGKVMELALGY 441
            R   K +   + Y
Sbjct: 694 IRRSAKAVNFGIIY 707


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%)

Query: 237 EKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++L T LF E GL LE   +T     T   VL     + P   ++   R      +   +
Sbjct: 532 KQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVV 591

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L +A+  DG++  T      ++TGR S      QN+P        L+Q          
Sbjct: 592 G-LQDAILEDGKIH-TRYVQDLTQTGRLSSTDPNLQNIPV------RLEQ---------- 633

Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       +R   + S E   L+ +D + IE RVLA ++ ++  ++AF+ G D++ 
Sbjct: 634 ---------GRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHT 684

Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
           +T  R F +  A+ VT + R   K +   + Y
Sbjct: 685 STAMRVFGIEKAEDVTPNDRRNAKAVNFGVVY 716


>gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1]
 gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC]
          Length = 869

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLV 377
            P Q  P  SR H   +Q+ T        DP+   I     R  ++        +    +
Sbjct: 586 LPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFRDTRQNNYFL 645

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R LA ++ ++    AFE+ ED++  T ++ F+V   +VTK QR   K +  
Sbjct: 646 SADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNF 705

Query: 438 ALGYQGGAKAFQKM 451
            + Y   A    K+
Sbjct: 706 GIIYGQQAYGLSKI 719


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
          Length = 878

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%)

Query: 237 EKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++L T LF E GL LE   +T     T   VL     + P   ++   R      +   +
Sbjct: 532 KQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVV 591

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L +A+  DG++  T      ++TGR S      QN+P        L+Q          
Sbjct: 592 G-LQDAILEDGKIH-TRYVQDLTQTGRLSSTDPNLQNIPV------RLEQ---------- 633

Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       +R   + S E   L+ +D + IE RVLA ++ ++  ++AF+ G D++ 
Sbjct: 634 ---------GRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHT 684

Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
           +T  R F +  A+ VT + R   K +   + Y
Sbjct: 685 STAMRVFGIEKAEDVTPNDRRNAKAVNFGVVY 716


>gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5]
 gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5]
          Length = 856

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPAQVTKD 427
           IAS G  L+  D + IE R+LA  + +Q  LKAFE  ED+++ T    F N A A     
Sbjct: 627 IASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQAQA----- 681

Query: 428 QRAIGKVMELALGYQGGAKAFQKMAST 454
           +R I K +   L Y  GA+   K+A T
Sbjct: 682 KRPIAKAINFGLIYGMGAR---KLAQT 705


>gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
 gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
          Length = 856

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPAQVTKD 427
           IAS G  L+  D + IE R+LA  + +Q  LKAFE  ED+++ T    F N A A     
Sbjct: 627 IASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQAQA----- 681

Query: 428 QRAIGKVMELALGYQGGAKAFQKMAST 454
           +R I K +   L Y  GA+   K+A T
Sbjct: 682 KRPIAKAINFGLIYGMGAR---KLAQT 705


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EG  L+  D + IE R+LA +AG     +AF  G D++  T +  F+V   +
Sbjct: 695 IREAFVAEEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEE 754

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 755 MTPEIRRKAKAINFGVIY 772


>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
          Length = 955

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P+ +R H     +        ++DP+    P++  I   +R   +A EG  L+ AD + I
Sbjct: 671 PKTNRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGREIRQAFVADEGNVLLAADYSQI 730

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R+ A MA      +AF  GED++  T    F      V +D RA  K +  A+ Y
Sbjct: 731 ELRLAAHMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILY 783


>gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg]
 gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg]
          Length = 994

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 33/270 (12%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L Y    +  RG  VD       +  + V   +L++++  L  G+  +    ++L  
Sbjct: 598 EMPLVYTLYDMEQRGIRVDTNGLKDYSDQLGVSIVELEKQIFELV-GVEFNINSPKQLGE 656

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLNTLVEAMN 299
            LF   GL     T+T         +KL+ +   I++     + ++      + LV  + 
Sbjct: 657 ILFQRLGLSYGKKTKTGYSTSAEVLEKLSSEHPVIKLILQYRQLTKLKSTYADGLVSYVE 716

Query: 300 SDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            DGR+ GT  Q + A  TGR S      QN+P           I   L   I        
Sbjct: 717 GDGRIHGTFNQTIAA--TGRLSSTEPNLQNIP-----------IRMELGRKI-------- 755

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 R   I  +G   + AD + IE R+LA M+ +   ++A+   +D++  T +  F+
Sbjct: 756 ------RKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVFH 809

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               +VT  QR+  K +   + Y  G  +F
Sbjct: 810 TPFDEVTSAQRSNAKAVNFGIVY--GISSF 837


>gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
 gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
          Length = 872

 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
           +R H    Q++T      +++P+ LQ I           R+ +  S    +V AD + IE
Sbjct: 596 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIE 654

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA ++G++  +++F   ED+++ T +  F V   +VT + R   K +   + Y
Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIY 710


>gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta]
          Length = 1484

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            R S  H  +  I  H P  IT   +      +I++   R+  ++S+G   + AD + IE 
Sbjct: 1173 RLSAKHPNIQGISKH-PIQITKPKNFKGKEDEILTISPRAMFVSSKGHTFLAADFSQIEL 1231

Query: 387  RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
            R+LA ++G+   LK F+  E  D++ T  ++  +V    VT   R   K +  A+ Y  G
Sbjct: 1232 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPMEHVTHADREQTKRVVYAVVYGAG 1291

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                +++A+  G+ +   A  ++  S  ++++  ++F R
Sbjct: 1292 K---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 1325


>gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72]
          Length = 880

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 565

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
           I   VR  V+A  G +LVVAD A +E R+LA +AG+   L      +DLY     R+F
Sbjct: 325 IPKVVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 382


>gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018]
 gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
 gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
          Length = 1033

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 14/146 (9%)

Query: 309 QFLGA----SRTGRWSGCVFPPQNLPR--PSRSHEELDQIITHLPTSITSDPDPLQ---- 358
           QFLGA      T +    V    +  R    R H   +Q I       +SDP+ LQ    
Sbjct: 726 QFLGALLKHRETNKLKQIVQSLIDSARYEDGRIHTTFEQTIAATGRLSSSDPN-LQNIPN 784

Query: 359 --IISDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
             ++   +R+  I  ++  +L+  D + +E R++A  + ++  +KAF++G D +    + 
Sbjct: 785 RNVVGREIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVASL 844

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGY 441
            + +   QV+ DQR+  K M   L Y
Sbjct: 845 VYKIPVEQVSPDQRSHVKAMSYGLAY 870


>gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta]
 gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta]
          Length = 2037

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 38/229 (16%)

Query: 236  LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + KL+T +F + G      +     +VL  ++K+        N R+  SR  + KLNT +
Sbjct: 1665 VRKLETKIFEQHGSRFNLGSSQAVAKVLGLHRKI--------NGRVTTSRQVLEKLNTPI 1716

Query: 296  EAMNSDGRLRGTLQFLGASR-TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              M            LG  +  G  +  + P     +  R H    Q IT+  T   S  
Sbjct: 1717 SHM-----------ILGYRKLAGLLAKSIQPLLKCCQADRIH---GQSITYTATGRISMA 1762

Query: 355  DP----------LQIISDCVR-SC----VIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            +P          +Q+ SD V  SC    ++  E + L+ AD   +E R+LA ++ ++  L
Sbjct: 1763 EPNLQNVAKEFCIQVGSDAVNISCRLPFMLKDEDRCLLSADFCQLEMRILAHLSQDKGLL 1822

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            K   + +DL++   A    +  ++V+++ R   K +   + Y  G ++ 
Sbjct: 1823 KVMNSSQDLFIAIAAHWNKIEESEVSQNLRNSTKQVCYGIVYGMGMRSL 1871


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 109/493 (22%), Positives = 194/493 (39%), Gaps = 114/493 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           FID ET +P D+               LF  G +  P+ + D +     P+++K+ +   
Sbjct: 26  FIDTET-TPKDIR--------------LFQVGLESGPIYVIDFLFVKRAPELIKDIIAKK 70

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAV-----GEALKL 118
            V    HN  ++   LK     DI  +    T+V A+  GL   +L +V     GE++  
Sbjct: 71  GVA--GHNLKYD---LKYLMKYDIHPYTTFDTMVGAQLIGLNRVSLASVYNHFTGESI-- 123

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
                 + KE  + +   E  E              ++F  Y   DV V R ++++L   
Sbjct: 124 ------DKKEQFSNWSSKELTES-------------QIF--YAAKDVEVLRLLYEKLKNE 162

Query: 176 ---EPL------SSKEQELWYLDQT--INDRGYCVDVA-LAHTLNQIVDVERTKLDQELE 223
              EP        S+  +++ L+ T  I + G+  ++A + HT   I   E   + ++L+
Sbjct: 163 LNKEPTIIEILQKSRVAKVFGLESTYAIIEMGFVQELAKIEHTGIGIDTKEIETMKKQLQ 222

Query: 224 SLTYGLVSSSRCLEKL------KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
             T  L  +     ++      K   FLE  L++  L  T    +++ +  L  + +   
Sbjct: 223 KKTQELAMNFYIKYRIDISSPKKVGEFLENHLNI-SLPRTDKDNIITDDSVLI-EHLDYE 280

Query: 278 NNRMRASRSAVL---KLNTLVEAM------NSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           N + +   S+VL   KL+ L E +      N + R+      +GA  TGR S      QN
Sbjct: 281 NEKAKDVISSVLEFRKLHKLQEKLSEILEYNENNRIHPEFWQIGAV-TGRMSSSRPNVQN 339

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +PR                                +RS + A +G   V+AD + IE R+
Sbjct: 340 IPRE-------------------------------LRSILKAKDGYVFVIADFSQIELRI 368

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A    ++  +     GEDL+  T +     +   +TK++R   K     L Y    K+ 
Sbjct: 369 AAEYVKDEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKSL 428

Query: 449 QKMA-STTGLNLN 460
              A ++ G++++
Sbjct: 429 SLYARNSYGIDMS 441


>gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 872

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
           +R H    Q++T      +++P+ LQ I           R+ +  S    +V AD + IE
Sbjct: 596 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIE 654

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA ++G++  +++F   ED+++ T +  F V   +VT + R   K +   + Y
Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIY 710


>gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026]
          Length = 886

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 99/454 (21%), Positives = 167/454 (36%), Gaps = 122/454 (26%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A  LNQ+ +    KL QELE   Y        L   ++L   LF + GL     T+T   
Sbjct: 507 ASVLNQLGNDFAVKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 565

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   K  +P   ++ + R  A       +  L++ +  DGR+  T      + TG
Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLDCIQPDGRIH-TRYLQTLTTTG 623

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  +   EE  QI                      ++ V +++   + 
Sbjct: 624 RLSSVDPNLQNIPTKT---EEGKQI---------------------RKAFVPSTKDGYIF 659

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVME 436
             D + +E RVLA ++G++   +AF++G D++  T  + F++ +P +VT   R   K + 
Sbjct: 660 SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVN 719

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y           S  GL+ N                                    
Sbjct: 720 FGIVYG---------ISDYGLSKN------------------------------------ 734

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDK 555
             +G + ++ K        +  ++ N + +A ++  ENG A  I  +RR +P ++ K   
Sbjct: 735 --LGISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKN-- 790

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                              N RS+   T                + +Q  + DI+   M+
Sbjct: 791 ------------------FNVRSFAERTA-------------INSPIQGSAADIIKIAMI 819

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFN 643
           N  K          +VL VHDE++ + P  DE N
Sbjct: 820 NMQKKLDELHLKTKMVLQVHDELIFDVP-KDELN 852


>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 872

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
           +R H    Q++T      +++P+ LQ I           R+ +  ++   +V AD + IE
Sbjct: 596 NRVHSNFKQMVTSTGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 654

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA ++G++  +++F   ED+++ T +  F V   +VT + R   K +   + Y
Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIY 710


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A EG   +  D + IE R+LA  + ++  L AF   ED++V T    F     + 
Sbjct: 649 KSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHVRTAMMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   A L K+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEASLAKS 741


>gi|333025332|ref|ZP_08453396.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332745184|gb|EGJ75625.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 555

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
           I   VR  V+A  G +LVVAD A +E R+LA +AG+   L      +DLY     R+F
Sbjct: 315 IPKVVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 372


>gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 352 SDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
           SDP+  Q+      R C  A     LV AD +  E R+ A +A E+  + A+  G DL+ 
Sbjct: 125 SDPNLQQVPRGSAHRRCFTARPEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLHA 184

Query: 411 TTYARSFNVAPAQVTKDQRAIGK 433
            T AR  N     VTKD R + K
Sbjct: 185 LTAARVLNKDEDAVTKDDRQLAK 207


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score = 44.3 bits (103), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R    H   +Q IT      +SDP+ LQ I         +R C I   G     AD + I
Sbjct: 646 RTGHIHASFNQAITATGRLSSSDPN-LQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQI 704

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ +   ++AF  G D++  T A+ ++    +VT  QR   K     + Y
Sbjct: 705 ELRIMAHLSQDPNMVEAFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIY 761


>gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 565

 Score = 44.3 bits (103), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
           I   VR  V+A  G +LVVAD A +E R+LA +AG+   L      +DLY     R+F
Sbjct: 325 IPKVVRRAVVADPGWRLVVADAAQMEPRILAAVAGDAGLLDVAAKADDLYAAVSDRAF 382


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score = 44.3 bits (103), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 115/306 (37%), Gaps = 76/306 (24%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 742 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 801

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +  + R   K +   + Y  G  AF                L    S P   E+A  + R
Sbjct: 802 MPSEVRRRAKAINFGIIY--GISAF---------------GLANQLSIPR--EEAGQYIR 842

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              E  P   I+D    T      KA+ ++H  V  ++                    +R
Sbjct: 843 TYFERFP--GIKDYMEAT------KAFAREHGYVETIFG-------------------RR 875

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
              P +             P  R+       N R+ +N   +         G   + I +
Sbjct: 876 AHYPDIRASN---------PQIRAF------NERAAINAPIQ---------GSAADIIRR 911

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWAKG 660
           A+ R    E  +   K    ++L VHDE++ E P+ + E   S++ H+M   + P+ +  
Sbjct: 912 AMIR---MEDALAKEKLAARMLLQVHDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLA 968

Query: 661 LPLKAE 666
           +PL  +
Sbjct: 969 VPLHVD 974


>gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 849

 Score = 44.3 bits (103), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 110/318 (34%), Gaps = 89/318 (27%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P   R H      +T      +S P+ LQ I       + +R   IA +G K++ AD + 
Sbjct: 571 PLDGRIHTNFSTTVTATGRLSSSSPN-LQNIPIRSKEGNLIRQTFIAPKGYKIISADYSQ 629

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA +A      +AF  G+D++  T  + F V    +  D++   K   +  G   
Sbjct: 630 IELRLLAHVANVTAFKEAFANGKDIHGITAGQVFGVQK-DMEVDEQLRRKAKSINFGIMY 688

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
           G   F  +A   G+ +                E+A  +  +    +PE       I    
Sbjct: 689 GISQF-GLAKRLGITI----------------EEAAEYINYYFSCYPE-------IKVYM 724

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           E+V    RQ H  V  L+                                          
Sbjct: 725 EKVVSTARQ-HGYVETLF------------------------------------------ 741

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM---NATKA 620
            GR    +D+ N   YL    RQ          L     Q  + DI+   M+   +  KA
Sbjct: 742 -GRRCFVKDINNTIPYL----RQFAERAAINAPL-----QGTAADIIKCAMIQLFDQLKA 791

Query: 621 GYDIVLTVHDEIVCETPD 638
           G  I+L VHDE++ E  +
Sbjct: 792 G-KIILQVHDELLVEVEN 808


>gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp.
           SA3_actG]
          Length = 555

 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
           I   VR  V+A  G +LVVAD A +E R+LA +AG+   L      +DLY     R+F
Sbjct: 315 IPKVVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 372


>gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERENLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K]
 gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K]
          Length = 1072

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 22/173 (12%)

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGR-LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           ++  M+  R++  K   L+  +N   R L G+    G + T R S      QNLP    +
Sbjct: 698 YHASMQTKRNSFTK--KLLNMINKQKRTLHGSFSETG-TETSRLSSSNPNLQNLP----A 750

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           H              TSD +         RS V   E   L+ +D + +E R++     +
Sbjct: 751 H--------------TSDVNKFDYKHPIKRSFVSRFENGVLLGSDYSALEMRIIGLFTKD 796

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
              L++F  GED++  T +  +N    +VTK++R   K +   L +     +F
Sbjct: 797 PDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESPFSF 849


>gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b]
          Length = 190

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380
           P+ + +  R H   +Q +       ++ P+   I     +   +R+  IA E   LV AD
Sbjct: 58  PKLVDKNYRLHTTFNQDVVSTGRLSSTHPNLQNIPIRSTLGKKIRNAFIADEDNILVSAD 117

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            +  E R+ A MAG++  +  F    D++  T +  + +   QVT +QR   KV+   + 
Sbjct: 118 YSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVTSNQRRNAKVINFGVL 177

Query: 441 Y 441
           Y
Sbjct: 178 Y 178


>gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score = 44.3 bits (103), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++ V + EG  ++ AD + IE R+LA ++  +  ++AF+ GED++  T    F V+  ++
Sbjct: 640 KAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEM 699

Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448
           T D R   K +   + Y  G  AF
Sbjct: 700 TSDLRRSAKAINFGIIY--GMSAF 721


>gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
 gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243]
 gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243]
          Length = 875

 Score = 44.3 bits (103), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 12/130 (9%)

Query: 329 LPR----PSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVV 378
           LPR      R H   ++ +T      +S+P+   I         +R C +   EG   + 
Sbjct: 591 LPRMRADDGRVHTSFNETVTTTGRLSSSEPNLQNIPVRTEFGRQIRECFVPLEEGHAFLS 650

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++ ++  + AF +G D +  T +R F +    V+ + R+  K +   
Sbjct: 651 ADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVSPELRSRAKAVNFG 710

Query: 439 LGYQGGAKAF 448
           + Y  G +AF
Sbjct: 711 IVY--GQQAF 718


>gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
          Length = 872

 Score = 44.3 bits (103), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385
           +R H    Q++T      +++P+ LQ I           R+ +  ++   +V AD + IE
Sbjct: 596 NRVHSNFKQMVTSTGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 654

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            RVLA ++G++  +++F   ED+++ T +  F V   +VT + R   K +   + Y
Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIY 710


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++ V + EG  ++ AD + IE R+LA ++  +  ++AF+ GED++  T    F V+  ++
Sbjct: 640 KAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEM 699

Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448
           T D R   K +   + Y  G  AF
Sbjct: 700 TSDLRRSAKAINFGIIY--GMSAF 721


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 24/111 (21%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT----------- 412
           +R   IA +G KL+VAD   +E RVLA M   +  + AF  G D +  T           
Sbjct: 592 IRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVITMFPHIQEE 651

Query: 413 ---------YARSFNVAPAQVTKD----QRAIGKVMELALGYQGGAKAFQK 450
                    + +S   APA + KD    +R   KV+  ++ Y   A  F K
Sbjct: 652 IDKGELLIEWDKSKGKAPAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAK 702


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 24/111 (21%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT----------- 412
           +R   IA +G KL+VAD   +E RVLA M   +  + AF  G D +  T           
Sbjct: 592 IRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVITMFPHIQEE 651

Query: 413 ---------YARSFNVAPAQVTKD----QRAIGKVMELALGYQGGAKAFQK 450
                    + +S   APA + KD    +R   KV+  ++ Y   A  F K
Sbjct: 652 IDKGELLIEWDKSKGKAPAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAK 702


>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
 gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
          Length = 875

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   I  +G KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+   +
Sbjct: 638 IRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDDIHTQTACQIFNLPKDK 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +T   R   K +   + Y  G  AF
Sbjct: 698 LTSKHRRKAKAINFGIIY--GISAF 720


>gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1]
 gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I
 gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1]
          Length = 956

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G  L+ AD + IE R+LA +A +    +AF  G D++  T A+   +  A 
Sbjct: 719 IRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGLDEAT 778

Query: 424 VTKDQRAIGKVMELALGY 441
           V  +QR   K +   + Y
Sbjct: 779 VDANQRRAAKTVNFGVLY 796


>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
 gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
          Length = 936

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A+ G  +V  D + IE R+LA +AG     +AF  G D++  T +  F+V   Q
Sbjct: 696 IREAFVAAPGNVIVSLDYSQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQ 755

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 756 MTPDIRRQAKAINFGVIY 773


>gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 12/97 (12%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R    A +G K V  D + IE RVL++++G++   +A+  G+DLY    ++ + V    
Sbjct: 460 IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYED 519

Query: 421 -----PAQVT----KDQRAIGKVMELALGYQGGAKAF 448
                P        K +R   K + L + Y+ GAKA 
Sbjct: 520 CREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAI 556


>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
 gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVY 729


>gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 12/97 (12%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R    A +G K V  D + IE RVL++++G++   +A+  G+DLY    ++ + V    
Sbjct: 460 IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYED 519

Query: 421 -----PAQVT----KDQRAIGKVMELALGYQGGAKAF 448
                P        K +R   K + L + Y+ GAKA 
Sbjct: 520 CREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAI 556


>gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3]
 gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
 gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
          Length = 877

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
            + H   +Q +T      ++DP+    P+++     +R   + SE G  +  +D + +E 
Sbjct: 599 GKVHTRFNQALTQTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPSEEGWLIFSSDYSQVEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA ++G++  ++AF  G D++  T    F+V   +VT + R   K +   + Y
Sbjct: 659 RVLAHISGDEKLIEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNFGIVY 713


>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVY 729


>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
 gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
 gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
 gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI]
 gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
          Length = 877

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%)

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A  G  ++ AD + IE RVLA +  ++  +KAF  G D++  T  + F V P +V    R
Sbjct: 643 AEPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMR 702

Query: 430 AIGKVMELALGY 441
              K +   + Y
Sbjct: 703 RQAKAVNFGIVY 714


>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 877

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
 gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
 gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
          Length = 877

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 877

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160]
 gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1]
 gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
 gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
 gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
          Length = 865

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + SE G  L  AD + IE RV+A M+ ++  ++AF    D++  T +  F VAP 
Sbjct: 625 IRKAFVPSEPGWSLYAADYSQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSVFGVAPN 684

Query: 423 QVTKDQRAIGKVMELALGY 441
            VT + R   K +   + Y
Sbjct: 685 DVTGNMRRQAKAVNFGIIY 703


>gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
 gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   +++DG +  T      + TGR S      QN+P       E+ ++           
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                         +   EG  L+ AD + IE RVLA ++G++  + AF    D++  T 
Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           +  F V   +VT   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
 gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   +++DG +  T      + TGR S      QN+P       E+ ++           
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                         +   EG  L+ AD + IE RVLA ++G++  + AF    D++  T 
Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           +  F V   +VT   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
 gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
 gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
          Length = 881

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  ++AF  G D++ +T  R FN+  P  VT + R 
Sbjct: 649 EDSVLLSSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRR 708

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 709 NAKAVNFGVVY 719


>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 877

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
 gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
 gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
          Length = 866

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   +++DG +  T      + TGR S      QN+P       E+ ++           
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                         +   EG  L+ AD + IE RVLA ++G++  + AF    D++  T 
Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           +  F V   +VT   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli]
 gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 44.3 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           I  E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +Q
Sbjct: 2   IGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61

Query: 429 RAIGKVMELALGYQGGAKAF 448
           R   K +   L Y  G  AF
Sbjct: 62  RRSAKAINFGLIY--GMSAF 79


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IASEG  L+  D + IE R+LA  + +   + AF+ G D++  T  + F    A 
Sbjct: 664 IRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKKIFGEREA- 722

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
             K  R I K +   L Y  G++   K++ T  ++       + +  A   +   ++F +
Sbjct: 723 --KAHRGIAKTINFGLIYGMGSR---KLSETLRISPKEAKGYIDSYFA--SFPTVKSFLK 775

Query: 484 WMQENHPEHAIEDLFIG 500
             +E   EH   +  +G
Sbjct: 776 AQEEFALEHGYTETLLG 792


>gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1]
 gi|737486|prf||1922368A DNA polymerase I
          Length = 921

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +G  L+ AD + IE R+LA +A +    +AF  G D++  T A+   +  A 
Sbjct: 684 IRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGLDEAT 743

Query: 424 VTKDQRAIGKVMELALGY 441
           V  +QR   K +   + Y
Sbjct: 744 VDANQRRAAKTVNFGVLY 761


>gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150]
          Length = 880

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 842

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS--FNVAP 421
           +R   I+ EG  LV  D + IE RVLA ++ ++  + A++  +DL+  T AR   F    
Sbjct: 662 IRKGFISEEGWSLVSFDYSQIELRVLAELSKDENLVLAYKKDKDLHDLT-ARKIFFKADE 720

Query: 422 AQVTKDQRAIGKVMELALGY 441
            QVT+++R+I KV+  ++ Y
Sbjct: 721 EQVTREERSIAKVINFSILY 740


>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 891

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
 gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
          Length = 882

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q +T      +++P+    P ++ +   +R   +  EG   V AD + IE RV
Sbjct: 608 RIHGKFNQTVTATGRISSTEPNLQNIPARVELGRLIRKVFVPEEGYVFVDADYSQIELRV 667

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           LA  +G+   ++A+   +D++  T ++ F+    +VT  QR   K +   + Y
Sbjct: 668 LAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTDLQRRNAKAVNFGIVY 720


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 43/82 (52%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R      +G   + AD + IE  +LA ++ ++  ++AF+  +D+++ T ++ F V   +
Sbjct: 679 IREAFKPEKGNIFISADYSQIELVILAHLSEDESLIEAFKNKKDIHIKTASQLFKVDEEK 738

Query: 424 VTKDQRAIGKVMELALGYQGGA 445
           VT   R I K +   + Y+  A
Sbjct: 739 VTSSMRRIAKSINFGIIYRMSA 760


>gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
 gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
          Length = 866

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   +++DG +  T      + TGR S      QN+P       E+ ++           
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                         +   EG  L+ AD + IE RVLA ++G++  + AF    D++  T 
Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           +  F V   +VT   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
 gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
          Length = 877

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
 gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
 gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
          Length = 877

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
 gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
          Length = 866

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   +++DG +  T      + TGR S      QN+P       E+ ++           
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                         +   EG  L+ AD + IE RVLA ++G++  + AF    D++  T 
Sbjct: 631 --------------IPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           +  F V   +VT   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
 gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
          Length = 877

 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
 gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
          Length = 877

 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36]
 gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains,
           putative [Streptococcus sanguinis SK36]
          Length = 880

 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
 gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bacillus anthracis str. A2012]
 gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
 gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
 gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
 gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
 gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
 gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
 gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
 gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
 gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
 gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
 gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
          Length = 877

 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score = 43.9 bits (102), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           + SR + E  QI        +  P+ LQ I   ++S   A +G   ++AD + IE R+ A
Sbjct: 319 KNSRVYGEFKQIGASTGRMSSYKPN-LQNIPKNLKSIFRAPDGYLFIIADYSQIELRIAA 377

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
               ++  +KAF+  +DL+  T +        ++TK++R + K +   L Y    K+  +
Sbjct: 378 EYTKDKSMIKAFQEKKDLHKLTASVITGKDYQEITKEERNLAKAINFGLIYGISPKSLVE 437

Query: 451 MA 452
            A
Sbjct: 438 YA 439


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score = 43.9 bits (102), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 6/165 (3%)

Query: 326  PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAG 383
            PQ++  + ++ H   +Q+ T      +  P+  QI     +R   I  +    ++AD   
Sbjct: 1587 PQHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPQKDNIFIIADFKQ 1646

Query: 384  IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            IE ++ A +  +   LKA+    DL+  T +       A V K+ R I K +   L Y  
Sbjct: 1647 IELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKPIADVNKEDRHIAKAINFGLIYGM 1706

Query: 444  GAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
                 +  A+T   LN+N    L   NS  E +   +   RW  +
Sbjct: 1707 NYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHY---KGIYRWHNQ 1748


>gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score = 43.9 bits (102), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   +++DG +  T      + TGR S      QN+P       E+ ++           
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                         +   EG  L+ AD + IE RVLA ++G++  + AF    D++  T 
Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           +  F V   +VT   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101]
 gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101]
          Length = 866

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   +++DG +  T      + TGR S      QN+P       E+ ++           
Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                         +   EG  L+ AD + IE RVLA ++G++  + AF    D++  T 
Sbjct: 631 --------------IPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           +  F V   +VT   R+  K +   + Y  G
Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q +T      ++DP+    P+++     +R   I SE G K++ AD + IE 
Sbjct: 599 SKIHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFIPSEEGWKILAADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F+V+   VT   R   K +   + Y
Sbjct: 659 RVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEEDVTSMMRRSAKAVNFGIVY 713


>gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis]
          Length = 158

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 8/133 (6%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A EG  ++ AD + IE R++A    ++  +KAF+  +DL+  T +        +
Sbjct: 4   LRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKNYEE 63

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTFAHLVKTNSAPEE-WEDAENF 481
           +TK++R + K +   L Y    K+    AS+  G+N+     L + N   +  +E  ++ 
Sbjct: 64  ITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINIT----LPEANKFHKNFFEFYKDI 119

Query: 482 CRWMQE--NHPEH 492
            +W +E  NH  H
Sbjct: 120 KKWHEETKNHLNH 132


>gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159]
 gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159]
          Length = 878

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  VT + R   K 
Sbjct: 650 LLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKA 709

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHA 493
           +   + Y  G   F  +A+  G++     + ++T    E +   +N+  R ++E   +  
Sbjct: 710 VNFGVVY--GISDF-GLANNLGISRKAAKNYIETYF--ERYPGIKNYMDRVVREARDKGY 764

Query: 494 IEDLF 498
           +E LF
Sbjct: 765 VETLF 769


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 39/234 (16%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTET---TCQRVLSSNKKLTP 271
           +L QE+  +  G V +    ++L   LF  ++  LHL   T+T   T   VL     + P
Sbjct: 521 ELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAVDVLERLAPIAP 579

Query: 272 QAIQVFNNRM--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
              ++ + R   +   + V+ L   + A   DGR+  T      ++TGR S      QN+
Sbjct: 580 IVAKILDYRQITKLQSTYVIGLQDYIMA---DGRIH-TRYLQDLTQTGRLSSVDPNLQNI 635

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARV 388
           P        L+Q                      +R     S +   L+ +D + IE RV
Sbjct: 636 PI------RLEQ-------------------GRLIRKAFTPSHDDAVLLSSDYSQIELRV 670

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
           LA ++G++  + AF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 671 LAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVY 724


>gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
 gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
          Length = 887

 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 27/152 (17%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++ ++ DGR+  T     AS TGR S      QN+P  + +               
Sbjct: 595 IEGLIKTVHDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRR------------ 641

Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS     +G + L+ AD + IE RV+A ++ +   ++A++ GEDL+
Sbjct: 642 -------------IRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDLH 688

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
               +R F+V    VT + R   K M   L Y
Sbjct: 689 NFVGSRVFDVPIDDVTPELRRRVKAMSYGLVY 720


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA+ G KLV AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 797 IRTAFIATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEG 856

Query: 421 -PAQVTKDQRAI 431
            P+++ +  +AI
Sbjct: 857 MPSEIRRRAKAI 868


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA+ G KL+ AD + IE RVLA +A      KAF  G D++  T +  F V    
Sbjct: 734 IRTAFIAAPGYKLISADYSQIELRVLAHVADIPELKKAFAEGMDIHAMTASEMFGVPVEG 793

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 794 MPGEVRRRAKAI 805


>gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
          Length = 964

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IAS G  L+ AD + IE R+LA +       +AF++G D++  T +  F V    
Sbjct: 721 IRQAFIASPGHVLISADYSQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEG 780

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  + R   K +   + Y  G  AF  +A+  G++       +KT
Sbjct: 781 MPSETRRRAKAINFGIIY--GISAF-GLAAQLGIDQGEAGAYIKT 822


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC IA +G   +  D + IE R+LA  + ++  L+AF+  ED++  T    F     + 
Sbjct: 649 KSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEAFKNDEDIHARTAIMIF----GEN 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   A L KT
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEASLAKT 741


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 2/148 (1%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            + ++ H   +Q+ T      +  P+  QI     +R   I ++    ++AD   IE ++ 
Sbjct: 1748 KTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPNDNNIFIIADFKQIELKIA 1807

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A +  ++  LKA+    DL+  T +         + K+ R I K +   L Y       +
Sbjct: 1808 AEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLK 1867

Query: 450  KMAST-TGLNLNTFAHLVKTNSAPEEWE 476
              A+T  GLN++    L   NS  E ++
Sbjct: 1868 NYANTYYGLNMSLDQCLYFYNSFFEHYK 1895


>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 921

 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 31/151 (20%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L+  +N + GR+  +   +GA +TGR S      QN+P               + T I
Sbjct: 634 DALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIP---------------IRTEI 677

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             +          +R+  IA +G  L+ AD + IE R+ A +A E+  L+AF   ED++ 
Sbjct: 678 GRE----------IRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFREKEDIHA 727

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T  + F      V ++ RA  K +  A+ Y
Sbjct: 728 LTAKQLFG----HVDRESRARAKTINFAILY 754


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  L+  D + IE R+LA  + +   ++AF    D+++ T  + F    AQ
Sbjct: 657 IREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSAMIEAFHKEADIHLETAKKIFGEELAQ 716

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
              ++R++ K +   L Y  GA+   K++ T  +N
Sbjct: 717 ---EKRSVAKSINFGLIYGMGAR---KLSETLQIN 745


>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13]
 gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13]
          Length = 866

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 25/148 (16%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T      + TGR S      QN+P       E+ ++              
Sbjct: 585 VIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF------------- 630

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                      +   EG  L+ AD + IE RVLA ++G++  + AF    D++  T +  
Sbjct: 631 -----------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEV 679

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGG 444
           F V   +VT   R+  K +   + Y  G
Sbjct: 680 FKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR    A EG   V  D + IE R+LA  + ++  LKAFE  ED++  T    F  A  Q
Sbjct: 648 VRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALLKAFENDEDIHARTAISIFGSADGQ 707

Query: 424 VTKDQRAIGKVMELALGYQGGA 445
                RA+ K +   L Y  G+
Sbjct: 708 ----NRAVAKSINFGLIYGMGS 725


>gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025]
 gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025]
          Length = 878

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  VT + R   K 
Sbjct: 650 LLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKA 709

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHA 493
           +   + Y  G   F  +A+  G++     + ++T    E +   +N+  R ++E   +  
Sbjct: 710 VNFGVVY--GISDF-GLANNLGISRKAAKNYIETYF--ERYPGIKNYMDRVVREARDKGY 764

Query: 494 IEDLF 498
           +E LF
Sbjct: 765 VETLF 769


>gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621]
 gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A +   ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 59/297 (19%), Positives = 124/297 (41%), Gaps = 27/297 (9%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +Y   D  +T ++ +  EP+  K +         +   + V+  L   L   VD+ER  +
Sbjct: 495 DYAAEDADITLQLKEIFEPMLIKVEA--------DKLAHEVEFPLVPVL---VDMERVGV 543

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             ++++L+   ++    ++ L+  ++ + G+     +      VL    +L P+A +   
Sbjct: 544 RIDVKALSDFSLAIQNEVQILEARIYEKAGVPFNIASPKQLGEVLFDKLQLDPKAKKTKT 603

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            + +     ++ L       N    ++  L++    +         P     +  R H  
Sbjct: 604 GQYQTGEDVLMAL------ANKSDIVQDILEYRQLQKLRSTYVDALPQLINTKTGRVHTS 657

Query: 339 LDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV-ADLAGIEARVLAW 391
            +Q +       +++P+ LQ I         VR   IA + + +++ AD + IE R++A 
Sbjct: 658 YNQAVAATGRLSSNNPN-LQNIPIRTERGREVRKAFIARDDEHVILSADYSQIELRLIAE 716

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           ++ +   L AF  G D++  T A+ + V   +VT +QR   K +   + Y  G  AF
Sbjct: 717 ISKDANMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKAVNFGIIY--GQSAF 771


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DGRL  +        TGR S      QN+P  +    E+ +    +PT      D   I+
Sbjct: 668 DGRLHTSYN-QAVVATGRLSSTNPNLQNIPIKTAKGREIRK--AFIPTD-----DDFVIL 719

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
           S                 AD + IE R++A  + ++  ++AF  G D++  T ++ + + 
Sbjct: 720 S-----------------ADYSQIELRLIAAFSQDETMMEAFNNGTDIHTATASKIYKID 762

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAF 448
             +VT D R + K    A+ Y  G+ AF
Sbjct: 763 IQEVTADMRRMAKTANFAILY--GSSAF 788


>gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
 gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 25/148 (16%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T      + TGR S      QN+P       E+ ++              
Sbjct: 585 VIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF------------- 630

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                      +   EG  L+ AD + IE RVLA ++G++  + AF    D++  T +  
Sbjct: 631 -----------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEV 679

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGG 444
           F V   +VT   R+  K +   + Y  G
Sbjct: 680 FKVPVEEVTPLMRSRAKAVNFGIVYGIG 707


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R      EG   + AD + IE  +LA  + +   ++AF+  ED+++ T ++ F V   +
Sbjct: 665 IREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEAFKNKEDIHIKTASQLFKVDTDK 724

Query: 424 VTKDQRAIGKVMELALGYQGGA 445
           VT   R + K +   + Y   A
Sbjct: 725 VTPSMRRVAKSINFGIIYNMSA 746


>gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
 gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
          Length = 871

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q IT      +++P+    P+++ +   +R   +  EG   + AD + IE R
Sbjct: 596 GRIHGTFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPQEGYVFIDADYSQIELR 655

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +LA  +G+   ++A+   +D++  T ++ F     +VT  QR   K +   + Y
Sbjct: 656 ILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTDLQRRNAKAVNFGIVY 709


>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
 gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2]
 gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2]
          Length = 608

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            VR C +A  G+ +V  D    E RVLA +A ++  ++AFE   DL+  T         A
Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVT---------A 424

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                 R +GK+      Y GGA    K+A+  G+  
Sbjct: 425 DAAGMDRKVGKMANFLTVYGGGAG---KLATNAGITF 458


>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
 gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVDAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 856

 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            + AD + IE RVLA ++G++   +AFE G D++  T A  F V   +V+ + R + K++
Sbjct: 630 FIAADYSQIELRVLAHISGDKKLCEAFERGRDIHAETAAWIFGVDTEKVSPELRRMAKMI 689

Query: 436 ELALGY 441
              L Y
Sbjct: 690 NFGLLY 695


>gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
 gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
          Length = 877

 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A +   ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 715


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 899

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 39/234 (16%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTET---TCQRVLSSNKKLTP 271
           +L QE+  +  G V +    ++L   LF  ++  LHL   T+T   T   VL     + P
Sbjct: 534 ELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAVDVLERLAPIAP 592

Query: 272 QAIQVFNNRM--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
              ++ + R   +   + V+ L   + A   DGR+  T      ++TGR S      QN+
Sbjct: 593 IVAKILDYRQITKLQSTYVIGLQDYIMA---DGRIH-TRYLQDLTQTGRLSSVDPNLQNI 648

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARV 388
           P        L+Q                      +R     S +   L+ +D + IE RV
Sbjct: 649 PI------RLEQ-------------------GRLIRKAFTPSHDDAVLLSSDYSQIELRV 683

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
           LA ++G++  + AF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 684 LAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVY 737


>gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus]
          Length = 172

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           DP+ LQ I   +R     ++   ++VAD + IE R+ A    +Q  + AF+ G DL+  T
Sbjct: 1   DPN-LQNIPTSLRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLDLHRFT 59

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            +         +TK++R + K +   L Y    ++  + AS++
Sbjct: 60  ASLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSS 102


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 39/234 (16%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTET---TCQRVLSSNKKLTP 271
           +L QE+  +  G V +    ++L   LF  ++  LHL   T+T   T   VL     + P
Sbjct: 521 ELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAVDVLERLAPIAP 579

Query: 272 QAIQVFNNRM--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
              ++ + R   +   + V+ L   + A   DGR+  T      ++TGR S      QN+
Sbjct: 580 IVAKILDYRQITKLQSTYVIGLQDYIMA---DGRIH-TRYLQDLTQTGRLSSVDPNLQNI 635

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARV 388
           P        L+Q                      +R     S +   L+ +D + IE RV
Sbjct: 636 PI------RLEQ-------------------GRLIRKAFTPSHDDAVLLSSDYSQIELRV 670

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
           LA ++G++  + AF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 671 LAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVY 724


>gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334]
          Length = 881

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   + S EG ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F + +
Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P QVT D R   K     + Y
Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719


>gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W]
 gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II]
          Length = 881

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   + S EG ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F + +
Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P QVT D R   K     + Y
Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719


>gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273]
 gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273]
          Length = 891

 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A +   ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729


>gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 881

 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   + S EG ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F + +
Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P QVT D R   K     + Y
Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719


>gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 881

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   + S EG ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F + +
Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P QVT D R   K     + Y
Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719


>gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
 gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
          Length = 881

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   + S EG ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F + +
Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P QVT D R   K     + Y
Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719


>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
 gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
          Length = 891

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
 gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
          Length = 877

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
 gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
          Length = 891

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193]
 gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193]
          Length = 935

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +  +G  L+  D + IE R+LA +AG      AF  G+D++  T +  F+V   +
Sbjct: 695 IREAFVPEQGNVLLSLDYSQIELRILAHVAGIDALKAAFAAGQDIHAMTASEMFDVPMEE 754

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 755 MTADIRRQAKAINFGVIY 772


>gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
 gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
          Length = 881

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   + S EG ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F + +
Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P QVT D R   K     + Y
Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719


>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
 gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
          Length = 877

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 26/163 (15%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q +T      +S+P+    P++   S  +R+  I      L+ AD + IE R+
Sbjct: 666 RIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRAAFIPESSWILMAADYSQIELRI 725

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ E   L+A+  G+D++  T      +   Q+  ++R + K++   + Y  G   F
Sbjct: 726 LAHLSQEPRLLEAYRNGQDVHTLT--AQLLLEKDQIAAEERRLAKIINFGVIYGMGPHRF 783

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            + A                     ++ +A++F +   + +PE
Sbjct: 784 AREAGV-------------------KYSEAKDFIQRFYDRYPE 807


>gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
 gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
          Length = 886

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 34/245 (13%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A  LNQ+ +    KL QELE   Y        L   ++L   LF + GL     T+T   
Sbjct: 507 ASVLNQLGNDFAVKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 565

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   K  +P   ++ + R  A       +  L++ +  DGR+  T      + TG
Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLDCIQPDGRIH-TRYLQTLTTTG 623

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  +   EE  QI                      ++ V +++   + 
Sbjct: 624 RLSSVDPNLQNIPTKT---EEGKQI---------------------RKAFVPSTKDGYIF 659

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVME 436
             D + +E RVLA ++G++   +AF++G D++  T  + F++ +P +VT   R   K + 
Sbjct: 660 SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVN 719

Query: 437 LALGY 441
             + Y
Sbjct: 720 FGIVY 724


>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
 gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
          Length = 891

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
 gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
          Length = 864

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  L+  D + IE RVLA M+ +   ++AF +GED++  T +  F V P +VT   R   
Sbjct: 635 GHVLLSGDYSQIELRVLAHMSQDPGLIEAFVSGEDIHRRTASEVFGVPPEEVTPLLRDKA 694

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 695 KAVNFGIIY 703


>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 891

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 117/309 (37%), Gaps = 80/309 (25%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  IA  G KLV AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 733 IRTAFIAEPGNKLVSADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 792

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +  + R   K +   + Y  G  AF                L    S P   E+A  + R
Sbjct: 793 MPSEVRRRAKAINFGIIY--GISAF---------------GLANQLSIPR--EEAGQYIR 833

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              E  P   I+D    T      KA+ +++  V  ++                    +R
Sbjct: 834 TYFERFP--GIKDYMEAT------KAFARENGYVETIFG-------------------RR 866

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
              P +             P  R+       N R+ +N   +         G   + I +
Sbjct: 867 AHYPDIRASN---------PQVRAF------NERAAINAPIQ---------GSAADIIRR 902

Query: 604 AVSR--DILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWA 658
           A+ R  D LAE  + A      ++L VHDE++ E PD + E    ++ H+M   + P+ +
Sbjct: 903 AMIRMEDALAEQNLAAR-----MLLQVHDELIFEVPDNEVEKTIPVVRHIMENAAMPAVS 957

Query: 659 KGLPLKAEG 667
             +PL  + 
Sbjct: 958 LAVPLHVDA 966


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R   +A+ GK L+ AD + IE R+LA +       KAF+ G D++  T +  FNV    
Sbjct: 730 IRKAFVAAPGKVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFNVPIEG 789

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 790 MPSEVRRRAKAI 801


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G      D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 649 KSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNAFTNDEDIHARTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   AHL K+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   ++ +G  LV  D + IE R++A ++ E   + AF+ GED++  T +  F V   +
Sbjct: 617 IRRAFVSEDGYFLVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEE 676

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           V    R+  K +   + Y   +    +  S T
Sbjct: 677 VDDLLRSRAKAVNFGIIYGISSFGLSETVSIT 708


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLA 382
           + +  + H   +Q +T      +++P+   I     +   +R   +  +   +++ AD +
Sbjct: 600 IDKDGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFVPEDENSIILSADYS 659

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA +A ++  + AF    D++  T +  F V   QVTK QR+  K +   + Y 
Sbjct: 660 QIELRVLAHIADDENLIDAFLNHSDIHTKTASEVFKVPIDQVTKLQRSNAKAVNFGIVYG 719

Query: 443 GG 444
            G
Sbjct: 720 IG 721


>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
 gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
          Length = 891

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni]
 gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 92  KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 147

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   AHL K+
Sbjct: 148 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 184


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R   IA+ G KLV AD + IE R+LA +A      +AF+ G D++  T +  F V    
Sbjct: 738 IRKAFIAAPGHKLVSADYSQIELRLLAEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEG 797

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 798 MPGEVRRRAKAI 809


>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
 gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
          Length = 853

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           +R   +A EG KLV AD + +E +++A +AG Q    AF  G+D+++ T  + F 
Sbjct: 615 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG 669


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVV-ADLAGIEAR 387
           + H   +Q +T      ++DP+    P+++     +R   + SE   ++  AD + IE R
Sbjct: 601 KVHTRFNQALTQTGRLSSADPNLQNIPIRLEEGRKIRQAFVPSEKDWVIFSADYSQIELR 660

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA ++G+Q  ++AF    D++  T    F+V   +VT + R   K +   + Y
Sbjct: 661 VLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKEEVTSNMRRQAKAVNFGIVY 714


>gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
 gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
          Length = 864

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           +R   +A EG KLV AD + +E +++A +AG Q    AF  G+D+++ T  + F 
Sbjct: 626 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG 680


>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
 gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
          Length = 864

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           +R   +A EG KLV AD + +E +++A +AG Q    AF  G+D+++ T  + F 
Sbjct: 626 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG 680


>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
          Length = 850

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           +R   +A EG KLV AD + +E +++A +AG Q    AF  G+D+++ T  + F 
Sbjct: 612 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG 666


>gi|333023285|ref|ZP_08451349.1| putative gp44 [Streptomyces sp. Tu6071]
 gi|332743137|gb|EGJ73578.1| putative gp44 [Streptomyces sp. Tu6071]
          Length = 624

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD-QRAIGKVMELA 438
           D + +E RV+A  +G+   L AF  G DL+  T   +F   P  +TK  +R  GK    A
Sbjct: 407 DFSNMELRVMAAASGDPVMLDAFNRGIDLHNITAIAAFGPMPEGMTKHPKRKAGKGTNFA 466

Query: 439 LGYQGGAKA 447
           +G+ GG KA
Sbjct: 467 VGFGGGWKA 475


>gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
           [Deinococcus deserti VCD115]
          Length = 923

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 330 PRPSRSHEELDQ--IITHLPTSITSDPDPLQIISDC---VRSCVIASEGKKLVVADLAGI 384
           PR  R H    Q  + T   +S+  +   + I S+    +R   IA +G  L+ AD + I
Sbjct: 647 PRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQI 706

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +A +    +AF  G D++  T A+   +    VT  QR   K +   + Y   
Sbjct: 707 ELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMS 766

Query: 445 AKAFQKMASTTGLNLNTFAHLVKT 468
           A    ++++  G++    A  ++T
Sbjct: 767 A---HRLSNELGISYVEAAGFIET 787


>gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
 gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
          Length = 891

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A +   ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729


>gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
          Length = 913

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   I+ EG  L+  D + IE R+LA    +   +++F   +D++  T AR F     Q
Sbjct: 680 IRQAFISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLFG---EQ 736

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN-----------SAP 472
               +R I K +   L Y  G+K   K++ T  + L      +++            +A 
Sbjct: 737 EAMQKRFIAKSINFGLIYGMGSK---KLSQTLQIPLKQAKEYIESYFALFPTIKDFLNAQ 793

Query: 473 EE----------------WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           EE                + D +    +M+ N     I  +F G+A + +K +  + H R
Sbjct: 794 EEFLLENGYSQTLLGHRRYFDFKRATDFMKANFLREGINSIFQGSAADLIKLSMCEIHKR 853

Query: 517 VSE 519
            ++
Sbjct: 854 YAK 856


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V +++   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 700 VTPNDRRNAKAVNFGIVY 717


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 1015

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A+ G +L+ AD   IE  VLA ++ ++  L AF    D++  T A  FNV+   
Sbjct: 776 IRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 835

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449
           V    R I K +   + Y  G  AF+
Sbjct: 836 VQPAMRRIAKTINFGIVY--GMSAFR 859


>gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
 gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
          Length = 910

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q +T      +++P+    P+++ +   +R    A EG   V +D + IE R
Sbjct: 635 GRIHSSFQQTVTATGRLSSTEPNLQNIPIRMELGKEIRRVFPAMEGCVFVDSDYSQIELR 694

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA ++ +   ++A+  G+D++  T +  F+    +VT  QR+  K +   + Y  G  A
Sbjct: 695 VLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAKAVNFGIVY--GISA 752

Query: 448 F 448
           F
Sbjct: 753 F 753


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A +G  +  +D + IE R++A ++ +   L AF  GED++  T A  F V   +
Sbjct: 684 IREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTSLE 743

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           V+ DQR + KV+   L Y  G  AF  +A   GL
Sbjct: 744 VSSDQRRMAKVINFGLIY--GMSAF-GLARNLGL 774


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG
           18311]
          Length = 879

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V +++   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 700 VTPNDRRNAKAVNFGIVY 717


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A       AFE G D++  T +  F V    
Sbjct: 755 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEG 814

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 815 MPSEVRRRAKAI 826


>gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115]
          Length = 926

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 330 PRPSRSHEELDQ--IITHLPTSITSDPDPLQIISDC---VRSCVIASEGKKLVVADLAGI 384
           PR  R H    Q  + T   +S+  +   + I S+    +R   IA +G  L+ AD + I
Sbjct: 650 PRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQI 709

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +A +    +AF  G D++  T A+   +    VT  QR   K +   + Y   
Sbjct: 710 ELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMS 769

Query: 445 AKAFQKMASTTGLNLNTFAHLVKT 468
           A    ++++  G++    A  ++T
Sbjct: 770 A---HRLSNELGISYVEAAGFIET 790


>gi|37626128|gb|AAQ96504.1| hypothetical protein [Vibrio phage VP16T]
          Length = 62

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           M      GY +V+  HDE++ E P+ D  +   +  LMT    W    P++A G++  RY
Sbjct: 1   MKKCENNGYPVVMHTHDELIAEVPE-DFGSVEEMAALMTEREPWRAWWPIRAAGWQDDRY 59

Query: 674 RK 675
           +K
Sbjct: 60  QK 61


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A       AFE G D++  T +  F V    
Sbjct: 752 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFGVPVEG 811

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 812 MPSEVRRRAKAI 823


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V +++   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 700 VTPNDRRNAKAVNFGIVY 717


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A+ G +L+ AD   IE  VLA ++ ++  L AF    D++  T A  FNV+   
Sbjct: 758 IRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 817

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449
           V    R I K +   + Y  G  AF+
Sbjct: 818 VQPAMRRIAKTINFGIVY--GMSAFR 841


>gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
          Length = 1004

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  +A+ G KLV AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820

Query: 421 -PAQVTKDQRAI 431
            P+++ +  +AI
Sbjct: 821 MPSEIRRRAKAI 832


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433
           K++ +D + IE RVLA +AG++  ++AF+   D++  T  R F ++ P  VT + R   K
Sbjct: 655 KILSSDYSQIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQAK 714

Query: 434 VMELALGY 441
            +   + Y
Sbjct: 715 AVNFGIVY 722


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  +A+ G KLV AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820

Query: 421 -PAQVTKDQRAI 431
            P+++ +  +AI
Sbjct: 821 MPSEIRRRAKAI 832


>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
 gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
          Length = 891

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEAR 387
           + H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE R
Sbjct: 616 KIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELR 675

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 676 VLAHIANDKGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729


>gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 930

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 19/160 (11%)

Query: 316 TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
           TGR S CV P  QNLPR       +   +         D D L       R C +A+ G 
Sbjct: 642 TGRLS-CVEPNLQNLPR-----NGITAAVAGNDAEEDGDDDLLGF-----RRCFVAAGGC 690

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+  D   IE RVLA + G+   ++A  T  D++       F   P  V+ ++R++ K 
Sbjct: 691 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP--VSTEERSLAKR 748

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK--TNSAP 472
           +   + Y  G K    +A+  G+ ++   H+    TN+ P
Sbjct: 749 VVFGVLYGAGPK---TLATHMGVTVDRALHITSLLTNAFP 785


>gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83]
          Length = 1004

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  +A+ G KLV AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820

Query: 421 -PAQVTKDQRAI 431
            P+++ +  +AI
Sbjct: 821 MPSEIRRRAKAI 832


>gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 375

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 13/105 (12%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMA----GEQWKLKAFETGEDLYVTTYARSFNV 419
           VR+C I  +G   V ADL  IE R++A +     G+    + F  G DLY T   ++F +
Sbjct: 39  VRNCFIPRKGFTFVGADLGQIEPRIMAHIMHTKYGDNSMRQIFMDGVDLYTTGAMQTFGL 98

Query: 420 APAQV---------TKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                         T + R + K  +LA+ Y    K+F K  + T
Sbjct: 99  EEKYCLDEAYDPTGTFEPRKLMKTGQLAVSYDQSPKSFAKKMNVT 143


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 15/141 (10%)

Query: 329 LPRPSRS-----HEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV 378
           +PR  RS     H   +Q  T      +S+P+   I      S  +R   +  +   LV 
Sbjct: 747 IPRLVRSDTQRVHTNFNQTQTDTGRLSSSEPNLQNIPIGTKFSRQIRQAFLPKKDWLLVA 806

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++ E   ++A++  +D++  T    F     +++ ++R +GK +   
Sbjct: 807 ADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAKLLFE--KEEISSEERRVGKTINFG 864

Query: 439 LGYQGGAKAFQKMASTTGLNL 459
           + Y  GA   QK+A +  + +
Sbjct: 865 VIYGMGA---QKLARSVKITV 882


>gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603]
 gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603]
          Length = 838

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      +++P+    P+++     +R   I SE G  +  AD + IE 
Sbjct: 562 SKIHTRFNQVLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEEGWIMYAADYSQIEL 621

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 622 RVLAHIAKDEGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 676


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384
           R    H   +Q +T      +SDP+ LQ I         +R C I         AD + I
Sbjct: 643 RTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRTDDGKEIRKCFIPEPKCLFFSADYSQI 701

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E R++A ++ ++  ++AF +G D++  T A+ ++V   +V+  QR   K     + Y
Sbjct: 702 ELRIMAHLSQDENMMEAFRSGHDIHRATAAKIWHVPMEEVSDAQRKKAKQANFGIIY 758


>gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
 gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
          Length = 974

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVV--ADLAGIEA 386
            R H    Q +T      +S+P+    P+++        V     K  V+  AD + IE 
Sbjct: 698 GRVHTRFHQTLTATGRLSSSEPNLQNIPIRLEEGRRLRRVFEPTYKDWVIFAADYSQIEL 757

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R+LA ++G++  + AF    D++  T A  F V P QVT   R   K +   + Y
Sbjct: 758 RILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVY 812


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-P 421
           VRS  + S  + KL+ +D + IE RVLA MA +   ++AF+   D++  T  R F +  P
Sbjct: 642 VRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNP 701

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT   R   K +   + Y
Sbjct: 702 EEVTSSMRRQAKAVNFGIVY 721


>gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056]
          Length = 880

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  ++ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKSEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 774

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    AS G  L+VAD   +E R+LA M G +  ++AFE G D +  T    F+   A+
Sbjct: 505 IRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKAK 564

Query: 424 V 424
           V
Sbjct: 565 V 565


>gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 28/137 (20%)

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           ++ L  N  + P+A QV    +   R A  ++N+ +E +  DGR+ G +   GA  TGR 
Sbjct: 89  EKTLKENSHV-PEAAQVLEYLLLQKRYA--QVNSWLEHVQDDGRVHGRVTTNGAV-TGR- 143

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
                                  +TH   ++   P       +  R+C I  EG+KLV  
Sbjct: 144 -----------------------MTHQNPNMAQVPSVNSEYGEDCRNCWIVPEGRKLVGV 180

Query: 380 DLAGIEARVLAWMAGEQ 396
           D +G+E R+LA   G++
Sbjct: 181 DASGLELRMLAHYMGDE 197


>gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912]
 gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912]
          Length = 890

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV------RSCVIASE-GKKLVVADLA 382
           P   + H    Q +T      ++DP+ LQ I   V      R   I SE G K+V AD +
Sbjct: 611 PETGKIHTCFQQAVTATGRLSSTDPN-LQNIPVRVEEGRRLRQAFIPSESGWKIVSADYS 669

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE RVLA  + +   ++AF    D++  T A  F V   QVT   R   K +   + Y
Sbjct: 670 QIELRVLAHFSKDPALVQAFRDDLDIHARTAAEVFEVPQEQVTPGMRRQAKAVNFGIVY 728


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           +  AD + IE RVLA +AG++  +KAF+   D++  T    F+V   +VT + R   K +
Sbjct: 653 MFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAV 712

Query: 436 ELALGY 441
              + Y
Sbjct: 713 NFGIVY 718


>gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048]
 gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048]
          Length = 891

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A +   ++AF    D++  T    F V   +VT + R   K +   + Y
Sbjct: 675 RVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   A+L K+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEANLAKS 741


>gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
 gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
          Length = 880

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQVENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLSLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +   + VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  +A+ G KLV AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820

Query: 421 -PAQVTKDQRAI 431
            P ++ +  +AI
Sbjct: 821 MPGEIRRRAKAI 832


>gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 416

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421
           +R   + S  G ++  +D + IE RVLA ++ ++   +AF+ G D++ +T  R FNV +P
Sbjct: 175 IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSP 234

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT + R   K +   + Y
Sbjct: 235 DEVTPNMRRQAKAVNFGIVY 254


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +A+  + ++  AD + IE RVLA +A ++  + AF+  +D++  T +  F V   
Sbjct: 641 IRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITASEVFRVPVE 700

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQK 450
           +VT   R+  K +   + Y  GA +  K
Sbjct: 701 EVTPLMRSNAKAVNFGIVYGIGAFSLSK 728


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   A+L K+
Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEANLAKS 741


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVA-DLAG 383
           P   R H   +Q+ T      +++P+   I     +   +R   +  EG  L+++ D + 
Sbjct: 593 PATGRIHTHFNQMATVTGRLSSTEPNLQNIPTRTEVGKRMREMFVPGEGYDLLMSCDYSQ 652

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +E RV+A +A ++  L +F  G+D++  T +  F V   QVT   R+  K +   + Y
Sbjct: 653 VELRVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIY 710


>gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100]
          Length = 702

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 19/143 (13%)

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           N DGR+ G+    G + T R S      Q LP                  + TSDP    
Sbjct: 348 NKDGRVHGSFNATG-TETTRLSSNNPNMQQLP------------------AKTSDPKRFD 388

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 R    A E   L+  D + +E R+LA  AG++   +AF  G DL+  T +  + 
Sbjct: 389 YQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWG 448

Query: 419 VAPAQVTKDQRAIGKVMELALGY 441
           +   +V  + R   K +   + Y
Sbjct: 449 MPVDKVPAEFRKKAKAVNFGIAY 471


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
 gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
          Length = 885

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 32/210 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF + GL     T+T   T   VL   K+ +P   +V + R  A   +   +  
Sbjct: 541 KQLGQILFEKLGLPPIKKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQIAKIQSTY-VKG 599

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ +  DGR+    Q    + TGR S      QN+P   R  E                
Sbjct: 600 LLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIP--VRLEE---------------- 640

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   + S     + + D + +E RVLA ++G++   +AF+TG D++  T
Sbjct: 641 -------GKKIRKAFVPSNSDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHT 693

Query: 413 YARSFNV-APAQVTKDQRAIGKVMELALGY 441
             + F++ +P +VT + R   K +   + Y
Sbjct: 694 AMKIFHLDSPNEVTPNMRRHAKAVNFGIVY 723


>gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 34/212 (16%)

Query: 237 EKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++L   LF E GL LE   +T     T   VL     + P   ++   R      +   +
Sbjct: 532 KQLGIILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVV 591

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L +A+  DG++  T      ++TGR S      QN+P        L+Q          
Sbjct: 592 G-LQDAILEDGKIH-TRYVQDLTQTGRLSSTDPNLQNIPV------RLEQ---------- 633

Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       +R   + S E   L+ +D + IE RVLA ++ ++  ++AF+ G D++ 
Sbjct: 634 ---------GRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHT 684

Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
           +T  R F +  A+ VT + R   K +   + Y
Sbjct: 685 STAMRVFGIEKAEDVTPNDRRNAKAVNFGVVY 716


>gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 871

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +++P+    P+++ +   +R   +  E    V AD + IE R
Sbjct: 596 GRIHGKFNQTVTATGRLSSTEPNLQNIPVRMELGRMIRKVFVPKEDCVFVDADYSQIELR 655

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA  +G++  +KA+    D++  T ++ F+    +VT  QR   K +   + Y
Sbjct: 656 VLAHCSGDEQLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIVY 709


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 811 MPSEVRRRAKAI 822


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++ V   E  +L+ AD + IE R++A  + ++  ++AF+ G D++ TT A+ F V    V
Sbjct: 698 KAFVPRDENYQLMAADYSQIELRIMAAFSQDEAMMEAFKNGRDIHATTAAKVFGVDLDDV 757

Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448
               R   K  E+  G   G  AF
Sbjct: 758 DPGMRR--KAKEVNFGIIYGISAF 779


>gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 645

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 34/159 (21%)

Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++  +E +NS  GR+   +  LG + TGR++      QN PR                  
Sbjct: 336 IDGYLEYINSVTGRIHPDMFPLG-TETGRFAARNPNLQNCPR------------------ 376

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              D DP+      VR+  IA +GK L+  D + IE RV A+   ++  L+ + TG D++
Sbjct: 377 --KDNDPVG-----VRNFFIAPKGKALLSLDFSQIELRVGAFYCRDERMLETYRTGGDIH 429

Query: 410 VTTYARSFNVA-------PAQVTKDQRAIGKVMELALGY 441
             T +  + +         AQ  K++RAI K     + Y
Sbjct: 430 AQTTSVIYRIPFEEAADKSAQHYKERRAIAKNCNFGVFY 468


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 811 MPSEVRRRAKAI 822


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 811 MPSEVRRRAKAI 822


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 811 MPSEVRRRAKAI 822


>gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
 gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
          Length = 892

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421
           +R   + S  G ++  +D + IE RVLA ++ ++   +AF+ G D++ +T  R FNV +P
Sbjct: 651 IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSP 710

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT + R   K +   + Y
Sbjct: 711 DEVTPNMRRQAKAVNFGIVY 730


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 736 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 795

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 796 MPSEVRRRAKAI 807


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
 gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
          Length = 1033

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R   IAS G KLV AD + IE R+L+ +A      KAF+ G D++  T +  F V    
Sbjct: 790 IRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDIHAMTASEMFGVPVEG 849

Query: 421 -PAQVTKDQRAI 431
            P+++ +  +AI
Sbjct: 850 MPSEIRRRAKAI 861


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 811 MPSEVRRRAKAI 822


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 811 MPSEVRRRAKAI 822


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
          Length = 892

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421
           +R   + S  G ++  +D + IE RVLA ++ ++   +AF+ G D++ +T  R FNV +P
Sbjct: 651 IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSP 710

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT + R   K +   + Y
Sbjct: 711 DEVTPNMRRQAKAVNFGIVY 730


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR C  A EG   V  D + IE R+LA  + +   L+AF+  ED++  T    F  +  Q
Sbjct: 647 VRECFEAREGYSFVGLDYSQIELRLLAHFSRDPALLEAFKNDEDIHARTAISIFGSSDGQ 706

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                RA+ K +   L Y  G+       + T
Sbjct: 707 ----NRAVAKSINFGLIYGMGSSKLANQVNIT 734


>gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
 gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
          Length = 811

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 351 TSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403
           +SDP+ LQ I         +R   + SE    L+ +D + IE RVLA ++ ++  + AF+
Sbjct: 621 SSDPN-LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFK 679

Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
            G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 680 EGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVY 718


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 752 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 811

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 812 MPSEVRRRAKAI 823


>gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118]
 gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118]
          Length = 892

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421
           +R   + S  G ++  +D + IE RVLA ++ ++   +AF+ G D++ +T  R FNV +P
Sbjct: 651 IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSP 710

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +VT + R   K +   + Y
Sbjct: 711 DEVTPNMRRQAKAVNFGIVY 730


>gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
 gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 513

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           I   +RS VIA  G   V+AD   +E R+LA M+G+  ++ A    +DLY    A +F+
Sbjct: 285 IPKPLRSSVIADPGHTFVIADAGQLEPRILAAMSGDA-RMVAAAGADDLYAPVAAETFD 342


>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
 gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
          Length = 849

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 45/213 (21%)

Query: 220 QELESLTYGL------VSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKK 268
           + LE   YGL      V+S+R L KL   LF   GL      +   + +T   VL+   +
Sbjct: 484 RSLEREIYGLAGCKFNVASARQLGKL---LFERMGLSSSTKKMPSGSYSTNAEVLT---E 537

Query: 269 LTPQAIQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
           L  + +++ +  ++    + LK   ++ L+  + +      T   + A+ TGR S     
Sbjct: 538 LAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTERVHTSYSMVATATGRISSSNPN 597

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S+   E                         +R   +A EG KLV AD + +E
Sbjct: 598 LQNIPIRSKEGTE-------------------------IRKAFVAREGHKLVSADYSQME 632

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
            +++A +AG Q    AF  G+D++  T  + F 
Sbjct: 633 LKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFG 665


>gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3]
 gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3]
          Length = 869

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLV 377
            P Q  P  SR H   +Q+ T        DP+   I     R  ++        +    +
Sbjct: 586 LPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTRQNNYFL 645

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R LA ++ ++    AF + ED++  T ++ F+V   +VTK QR   K +  
Sbjct: 646 SADYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNF 705

Query: 438 ALGYQGGAKAFQKM 451
            + Y   A    K+
Sbjct: 706 GIIYGQQAYGLSKI 719


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKK-LVVADLAG 383
           P+  R H   +Q I       +S+P+    P++  I   +R   + S+    L+ AD + 
Sbjct: 650 PKTGRIHTSFNQHIAATGRLSSSNPNLQNIPIRTEIGREIRGAFVPSDAHHTLLSADYSQ 709

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+ A ++G+   L AF+  ED++ TT    F     +VTKD R   K +   + Y
Sbjct: 710 IELRIAAELSGDPTMLGAFQNREDIHSTTAKLIFET--DEVTKDMRRKAKEVNFGVLY 765


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 755 IRTAFISTPGHKLISADYSQIELRVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEG 814

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 815 MPSEVRRRAKAI 826


>gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
 gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
          Length = 1003

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 15/145 (10%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA++G KLV AD + IE R+LA +A      +AF+ G D++  T +  F V    
Sbjct: 760 IRRAFIAAKGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 819

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN----SAPEEWEDA- 478
           +  + R   K +   + Y  G  AF  +A+  G+        +K           + DA 
Sbjct: 820 MPGEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIKKYFERFPGIRAYMDAT 876

Query: 479 ENFCRWMQENHPEHAIEDLFIGTAC 503
            +FCR       EH       G  C
Sbjct: 877 RDFCR-------EHGYVTTLFGRKC 894


>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
          Length = 877

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386
           S+ H   +Q++T      +++P+    P+++     +R   I S EG  +  AD + IE 
Sbjct: 601 SKIHTRFNQVLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSQEGWVMYAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNFGIVY 715


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      ++DP+    P+++     +R   + SE   L+  AD + 
Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA ++ +Q  ++AF    D++  T    F+VA  +VT   R   K +   + Y
Sbjct: 661 IELRVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNFGIVY 718


>gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
 gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
          Length = 1025

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R   +A+ G KLV AD + IE R+L+ +A      KAF+ G D++  T +  F V    
Sbjct: 782 IRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 841

Query: 421 -PAQVTKDQRAI 431
            P+++ +  +AI
Sbjct: 842 MPSEIRRRAKAI 853


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            + ++ H   +Q+ T      +  P+  QI     +R   I +E    ++AD   IE ++ 
Sbjct: 1540 KTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPTENNIFIIADFKQIELKIA 1599

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A +  ++  LKA+    DL+  T +        ++ K+ R + K +   L Y       +
Sbjct: 1600 AEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINKEDRHVAKAINFGLLYGMNYVNLR 1659

Query: 450  KMAST 454
              A+T
Sbjct: 1660 TYANT 1664


>gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
 gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R   IA+ G KLV AD + IE R+LA +A      +AF+ G D++  T +  F V    
Sbjct: 778 IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKD 837

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 838 MPSEVRRRAKAI 849


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC IA +G   +  D + IE R+LA  + ++  L+AF+  ED++  T    F     + 
Sbjct: 649 KSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEAFKNDEDIHARTAIMIF----GEN 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQK 450
             + R++ K +   L Y  G K   +
Sbjct: 705 NYETRSVAKSINFGLIYGMGYKTLSQ 730


>gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4]
 gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4]
          Length = 513

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           I   +RS VIA  G   V+AD   +E R+LA M+G+  ++ A    +DLY    A +F+
Sbjct: 285 IPKPLRSSVIADPGHTFVIADAGQLEPRILAAMSGDT-RMVAAAGADDLYAPVAAETFD 342


>gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
 gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
          Length = 1025

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R   +A+ G KLV AD + IE R+L+ +A      KAF+ G D++  T +  F V    
Sbjct: 782 IRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 841

Query: 421 -PAQVTKDQRAI 431
            P+++ +  +AI
Sbjct: 842 MPSEIRRRAKAI 853


>gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 880

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 351 TSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403
           +SDP+ LQ I         +R   + SE    L+ +D + IE RVLA ++ ++  + AF+
Sbjct: 621 SSDPN-LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFK 679

Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
            G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 680 EGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVY 718


>gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 868

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q++T      +++P+   I     +    RS  I  EG   + AD + +E R+
Sbjct: 594 RIHGSFQQMVTATGRLSSTEPNLQNIPIRTEMGRVFRSVFIPKEGSVFLDADYSQVELRL 653

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ ++  ++A+    D++  T +  F+V   +VT + R   K +   + Y  G  AF
Sbjct: 654 LASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAVNFGIVY--GISAF 711


>gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14]
 gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14]
          Length = 1014

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA+ G KLV AD + IE R+LA +A      +AF  G D++  T +  F V    
Sbjct: 771 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVTG 830

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN----SAPEEWEDA- 478
           +  + R   K +   + Y  G  AF  +A+  G+        +K           + DA 
Sbjct: 831 MPGEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGTYIKKYFERFPGIRAYMDAT 887

Query: 479 ENFCRWMQENHPEHAIEDLFIGTAC 503
            +FCR       EH   +   G  C
Sbjct: 888 RDFCR-------EHGYVETLFGRKC 905


>gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
 gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
          Length = 873

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 38/269 (14%)

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           EPLS    E+         +G  VDV       + + VE  +L+QE+ +   G   +   
Sbjct: 475 EPLSPILAEM-------EKQGIAVDVQRLQEFGRELTVELQRLEQEIYA-DAGETFNINS 526

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            ++L   LF + GL     T+T       + ++L  Q   V   R+   R     ++T V
Sbjct: 527 PQQLGHILFEKLGLPPMKKTKTGYSTDADTLEELRDQHSIV--ERVLDYRQLSKLMSTYV 584

Query: 296 EAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             + +   +GR+  T Q    + TGR S      QN+P        L ++ T  PT    
Sbjct: 585 NGLLAQIHEGRVHTTFQ-QTVTATGRLSSTEPNLQNIPIRLELGRLLRKVFT--PTQ--- 638

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                              EG  L+ AD + IE R+LA  + ++   ++F   +D++  T
Sbjct: 639 -------------------EGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRT 679

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +  F +  A+VTKD R   K +   L Y
Sbjct: 680 ASEVFGIPMAEVTKDMRRKAKAVNFGLIY 708


>gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813]
          Length = 880

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D++ +T  R F +  
Sbjct: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P  VT + R   K +   + Y
Sbjct: 698 PENVTPNDRRNAKAVNFGIVY 718


>gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515]
 gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515]
          Length = 880

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 351 TSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403
           +SDP+ LQ I         +R   + SE    L+ +D + IE RVLA ++ ++  + AF+
Sbjct: 621 SSDPN-LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFK 679

Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
            G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 680 EGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVY 718


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 24/132 (18%)

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P      +E+ +I   +P +                 CVI S 
Sbjct: 610 VTTTGRLSSTEPNLQNIPIKYEMGKEIRKIF--VPEN---------------EDCVILS- 651

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
                 AD + IE RVLA +A ++  + AF    D++  T +  F V   +VT  QR+  
Sbjct: 652 ------ADYSQIELRVLAHIADDENLISAFINHSDIHTKTASEVFKVPIDEVTSAQRSNA 705

Query: 433 KVMELALGYQGG 444
           K +   + Y  G
Sbjct: 706 KAVNFGIVYGIG 717


>gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255]
 gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255]
          Length = 1010

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 108/301 (35%), Gaps = 90/301 (29%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA+ G KLV AD + IE R+LA +A      +AF  G D++  T +  F V    
Sbjct: 767 IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVQG 826

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN----SAPEEWEDA- 478
           +  + R   K +   + Y  G  AF  +A+  G+     A  +K           + DA 
Sbjct: 827 MPGEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAAAYIKKYFERFPGIRAYMDAT 883

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
             FCR       EH       G  C          H    +  N  H+AF          
Sbjct: 884 REFCR-------EHGYVTTLFGRKC----------HYPDIKSPNPSHRAF---------- 916

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                               N R+ +N   +         G   
Sbjct: 917 ------------------------------------NERAAINARLQ---------GSAA 931

Query: 599 ENIVQAVSR--DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSN 654
           + I +A++R  D LA   ++A      ++L VHDE++ E PD DE  A++  + H+M   
Sbjct: 932 DIIRRAMARMDDALAARNLSAR-----MLLQVHDELIFEVPD-DEVAATLPVVQHVMQDA 985

Query: 655 P 655
           P
Sbjct: 986 P 986


>gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
 gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
          Length = 1020

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA+ G KLV AD + IE R+LA +A      +AF+ G D++  T +  F V    
Sbjct: 777 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 836

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +  + R   K +   + Y  G  AF
Sbjct: 837 MPSEVRRRAKAINFGIIY--GISAF 859


>gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1]
 gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1]
          Length = 880

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D++ +T  R F +  
Sbjct: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P  VT + R   K +   + Y
Sbjct: 698 PENVTPNDRRNAKAVNFGIVY 718


>gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
 gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
          Length = 878

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD--CVRSCVIASEGKKLVVADLAGIEA 386
            R H   +Q +T      +++P+    P+++       R+ V   +G  L+ AD + IE 
Sbjct: 599 GRIHTHFNQTVTATGRLSSTEPNLQNIPIRLEEGRRVRRAFVPGKKGNLLLSADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R+LA ++ +   + +F   ED++  T A  F V P  VT + R   K +   + Y
Sbjct: 659 RILAHVSKDPVLIDSFRKEEDIHRRTAAEVFGVLPEDVTPELRDRAKAVNFGIVY 713


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 40/78 (51%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   I  +    + AD + IE R++A ++ ++  L+AF  G+D++    +  F V  A+
Sbjct: 689 IRRVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAE 748

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K+    + Y
Sbjct: 749 ITCDMRRKAKITNFGIIY 766


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++   KL+ AD + IE RVLA +A      KAFE G D++  T +  F V    
Sbjct: 771 IRTAFISTPRHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830

Query: 421 -PAQVTKDQRAI 431
            P +V +  +AI
Sbjct: 831 MPGEVRRRAKAI 842


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 12/101 (11%)

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
           PLQ  S   R+ + A EG+++   D + IE   +A +AG+   L  F  G DLY     R
Sbjct: 374 PLQQFSGPARAILTADEGQRMWSVDWSQIEPVTMALLAGDSEFLAPFAAGADLY-EPIMR 432

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
           +  +        +R + KV+ L   Y  GA    K+A T G
Sbjct: 433 AAGI--------ERKVAKVLLLQTMYGSGAA---KIAETIG 462


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1047

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 38/200 (19%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF------ 417
           +R   +AS G  LVVAD   +E R+LA + G +  ++AF+ G D +  T    +      
Sbjct: 780 IRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHIREA 839

Query: 418 ----------------NVAPAQVTKD----QRAIGKVMELALGYQGGAKAFQKMASTTGL 457
                           +  P  + KD    +R   K++  ++ Y   A          GL
Sbjct: 840 VENGQVILEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTA---------IGL 890

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           + +    + +     + W +     R  QE   + AIED ++ T   R ++  R K SR 
Sbjct: 891 SRDWKVSVEEAQDTVKLWYNDRQEVRKWQERRKKEAIEDGYVRTLLGRSRRFPRYK-SRA 949

Query: 518 SELWNELHQAFEQTIENGKA 537
            +  N + +A   T   G A
Sbjct: 950 QK--NHIQRAAINTPVQGSA 967


>gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
 gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
          Length = 885

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL   K  +P   +V + R  A   +   +  L++ +  DGR+    Q    + T
Sbjct: 564 STSVEVLEQLKDQSPIVQKVLDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYQ-QTLTAT 621

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P   R  E                          +R   I S     
Sbjct: 622 GRLSSVDPNLQNIP--VRLEE-----------------------GKKIRKAFIPSNKDGY 656

Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
           + + D + +E RVLA ++G++   +AF+TG D++  T  + F++ +P +VT + R   K 
Sbjct: 657 IFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTPNMRRHAKA 716

Query: 435 MELALGY 441
           +   + Y
Sbjct: 717 VNFGIVY 723


>gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 696

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H       T      +SDP+ LQ I         +R+  IA  G KL+ AD + 
Sbjct: 414 PQTKRVHTSYAMASTSTGRLSSSDPN-LQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQ 472

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA----PAQVTKDQRAI 431
           IE RVLA +A      +AF  G D++  T +  F V     P++V +  +AI
Sbjct: 473 IELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAI 524


>gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
 gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
          Length = 877

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLSQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYLQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
 gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
 gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 867

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   ++S    L++ AD + IE RVLA ++ ++  +++F   ED+++ T +  F V+  
Sbjct: 627 IRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFKVSKE 686

Query: 423 QVTKDQRAIGKVMELALGY 441
           +VT + R   K +   + Y
Sbjct: 687 EVTSEMRRRAKAVNFGIVY 705


>gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51]
 gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 873

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 36/268 (13%)

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           EPLS    E+         +G  VDV       + + VE  +L+QE+ +   G   +   
Sbjct: 475 EPLSPILAEM-------EKQGIAVDVQRLQEFGRELTVELQRLEQEIYA-DAGETFNINS 526

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLNT 293
            ++L   LF + GL     T+T       + ++L  Q   ++   +  + S+     +N 
Sbjct: 527 PQQLGHILFEKLGLPPMKKTKTGYSTDADTLEELRDQHSIVERVLDYRQLSKLMSTYVNG 586

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+  ++ +GR+  T Q    + TGR S      QN+P        L ++ T  PT     
Sbjct: 587 LLAQIH-EGRVHTTFQ-QTVTATGRLSSTEPNLQNIPIRLELGRLLRKVFT--PTQ---- 638

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                             EG  L+ AD + IE R+LA  + ++   ++F   +D++  T 
Sbjct: 639 ------------------EGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTA 680

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +  F +  A+VTKD R   K +   L Y
Sbjct: 681 SEVFGIPMAEVTKDMRRKAKAVNFGLIY 708


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE R+LA +A      +AF  G D++  T +  F V    
Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 811 MPSEVRRRAKAI 822


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+  R H       T      +SDP+ LQ I         +R+  IA  G KL+ AD + 
Sbjct: 406 PQTKRVHTSYAMASTSTGRLSSSDPN-LQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQ 464

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA----PAQVTKDQRAI 431
           IE RVLA +A      +AF  G D++  T +  F V     P++V +  +AI
Sbjct: 465 IELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAI 516


>gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
          Length = 975

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R+   A  EG  L+ AD + IE RVLA  +G++  + A+    D++    A    +  
Sbjct: 729 AIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHTRVAAEVNGIEE 788

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++VT D R I K +   + Y  G   F  +A T G++
Sbjct: 789 SEVTSDLRRIAKTINFGIVY--GQSPF-GLAKTLGIS 822


>gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
          Length = 885

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL   K  +P   +V + R  A   +   +  L++ +  DGR+    Q    + T
Sbjct: 564 STSVEVLEQLKDQSPIVQKVLDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYQ-QTLTAT 621

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P   R  E                          +R   I S     
Sbjct: 622 GRLSSVDPNLQNIP--VRLEE-----------------------GKKIRKAFIPSNKDGY 656

Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
           + + D + +E RVLA ++G++   +AF+TG D++  T  + F++ +P +VT + R   K 
Sbjct: 657 IFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTTNMRRHAKA 716

Query: 435 MELALGY 441
           +   + Y
Sbjct: 717 VNFGIVY 723


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            + ++ H   +Q+ T      +  P+  QI     +R   I +E    ++AD   IE ++ 
Sbjct: 1545 KTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPTENNIFIIADFKQIELKIA 1604

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A +  ++  LKA+    DL+  T +        ++ K+ R + K +   L Y       +
Sbjct: 1605 AEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINKEDRHVAKAINFGLLYGMNYVNLR 1664

Query: 450  KMAST 454
              A+T
Sbjct: 1665 TYANT 1669


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  IA  G KL+ AD + IE R+LA +A      +AF  G D++  T +  F V    
Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 795 MPSEVRRRAKAI 806


>gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 30/159 (18%)

Query: 288 VLKLN-TLVEAM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           + KLN T VE +    +SDG +  +      + TGR S      QN+P       E+ ++
Sbjct: 575 ITKLNSTYVEGLKNVIDSDGHIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKV 633

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                      PD                EG  L+  D + IE RVLA M+ ++  + AF
Sbjct: 634 FI---------PD---------------EEGDILLSCDYSQIELRVLAHMSNDENMIDAF 669

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +   D++  T +  F V    VT   R+  K +   + Y
Sbjct: 670 KHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIVY 708


>gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368]
          Length = 877

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYLQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301]
          Length = 877

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYLQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 942

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           +  AD + IE R+LA ++G++  + AF    D++  T A  F V P QVT   R   K +
Sbjct: 715 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 774

Query: 436 ELALGY 441
              + Y
Sbjct: 775 NFGIVY 780


>gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
 gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
          Length = 869

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 124/309 (40%), Gaps = 48/309 (15%)

Query: 157 FGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
           FGE+     T+   + K L+         + E  L  +  TI   G  +DV     L +I
Sbjct: 445 FGEFVSHLPTIKETLLKELKSKNIEDIFFNMEMPLEKVLFTIERNGMPLDVEDLQNLEKI 504

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           +  E   L  ++ +L  G   + +  ++L   L+ + GL   D   +T   VL +   +T
Sbjct: 505 LSEELAILADDIYALA-GSPFNIKSPKQLAEVLYNKLGLTPVDKARSTKAEVLEA---MT 560

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            +   +   ++ A RS    L+T V A+         R+  T   +G + TGR + C  P
Sbjct: 561 GEHDVI--EKILAFRSVEKLLSTYVRALPKQVDPCTFRIHPTFNQMG-TVTGRLA-CQDP 616

Query: 326 P-QNLPRPSRSHEELDQII--THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
             QN+P  S     L +    TH  T   S                          AD +
Sbjct: 617 NLQNIPIRSERGRLLRKAFCDTHQNTYFLS--------------------------ADYS 650

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R LA ++ ++    AFE+ ED++  T ++ F+V   +VTK QR   K +   + Y 
Sbjct: 651 QIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAKTVNFGIIYG 710

Query: 443 GGAKAFQKM 451
             A    K+
Sbjct: 711 QQAYGLSKI 719


>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
 gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
          Length = 937

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +R   +A +GK LV  D + IE R+LA +A      +AF  G D++  T A  FNV
Sbjct: 697 IREAFVAPKGKLLVSVDYSQIELRILAHIADIPALKQAFREGHDIHAMTAAEMFNV 752


>gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
 gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
          Length = 520

 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 12/92 (13%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           I   +RS V+A  G   VVAD   +E R+LA M+G++ ++ A    +DLY    A +F  
Sbjct: 290 IPKTMRSSVVADPGHVFVVADAGQLEPRILAAMSGDR-RMMAAAGDDDLYALVGAEAFG- 347

Query: 420 APAQVTKDQRAIGKVMELALGY---QGGAKAF 448
                    RA  KV  L + Y    G AKA 
Sbjct: 348 -------GDRAKAKVAILGVLYGATAGEAKAL 372


>gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645]
 gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645]
          Length = 880

 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGK-KLVVADLAG 383
           +  R H   +Q++       ++DP+ LQ I      S  +RS  I      KL+ AD + 
Sbjct: 594 KTDRVHTSFNQVVAATGRLSSNDPN-LQNIPIRTQESREIRSAFIPGTPDWKLLCADYSQ 652

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA  +G+   +++++  ED++    +  + V   QVT   R   K +   + Y
Sbjct: 653 IELRVLAHFSGDPALMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVY 710


>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
 gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +R   IA EG  LV AD + IE R+LA MA      +AF+ G D++  T +  F V
Sbjct: 687 IRQAFIAEEGNVLVSADYSQIELRILAHMADIPALKQAFKDGLDIHAMTASEMFGV 742


>gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
 gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
          Length = 1027

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R   +A+ G KLV AD + IE R+L+ +A      KAF+ G D++  T +  F V    
Sbjct: 784 IRRAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 843

Query: 421 -PAQVTKDQRAI 431
            P+++ +  +AI
Sbjct: 844 MPSEIRRRAKAI 855


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGIE 385
           +  + H   +Q +T      +S+P+   I I D     +R   I  +      AD + IE
Sbjct: 651 KTGKIHTSFNQTVTATGRLSSSNPNLQNIPIRDSDGKEIRKAFIPDQDSLFFSADYSQIE 710

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            R++A ++ +   ++AF  G+D++  T A+ +      +T DQR   K     + Y
Sbjct: 711 LRIMAHLSHDNNMMEAFLHGDDIHAATAAKVYKQDINTITSDQRRKAKTANFGIIY 766


>gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
 gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
          Length = 877

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
           ++ V   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 638 KAFVPEREDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 698 VTANDRRNAKAVNFGVVY 715


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R       G   + AD + IE  +LA ++ ++  +KAFE  +D+++ T ++ F +   +
Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDETLIKAFENNKDIHIETASKLFKIEEKE 728

Query: 424 -VTKDQRAIGKVMELALGYQ 442
            +T + R I K +   + Y+
Sbjct: 729 KITPNLRRIAKSINFGIIYR 748


>gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain
           Friedlin]
 gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major]
 gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major
           strain Friedlin]
          Length = 931

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 23/227 (10%)

Query: 316 TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
           TGR S CV P  QNLPR           IT       ++ D  + +    R C +A++G 
Sbjct: 643 TGRLS-CVEPNLQNLPRNG---------ITAAVAGNDAEEDGEEDLLG-FRRCFVATDGC 691

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+  D   IE RVLA + G+   ++A  T  D++       F   P  V+ ++R + K 
Sbjct: 692 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP--VSTEERRLAKR 749

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   L Y  G K    +A+  G+ ++   H+    +      DA       Q    E A 
Sbjct: 750 VVFGLLYGAGPKT---LATHMGVTVDRALHITSLLANAFPGIDA------YQRRVIEEAR 800

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            + F+ T   R++     + + +S       QAF   ++   A + +
Sbjct: 801 TNGFVRTLSGRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMK 847


>gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum]
          Length = 872

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I         +R C IA E + L+ AD + IE 
Sbjct: 598 GRLHGQFNQTVTATGRLSSSNPN-LQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIEL 656

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA  + +   +  FE  ED++  T AR     P  VT + R   K +   + Y  G  
Sbjct: 657 RLLAHFSEDPELMAVFERNEDIHART-ARLLFGDP--VTPETRRKAKTINFGILY--GMS 711

Query: 447 AF 448
           AF
Sbjct: 712 AF 713


>gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 1025

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVI-ASEGKKLVVADLAGIEA 386
           R H   +Q I       ++DP+ LQ I +       +R+  I   E + L+  D + +E 
Sbjct: 749 RIHTTFEQTIAATGRLSSADPN-LQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A  + ++  ++AF +G D +    +  + +   QVT DQR+  K M   L Y
Sbjct: 808 RIMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAY 862


>gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
 gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
          Length = 886

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 38/247 (15%)

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257
           A  LNQ+ +    KL QELE   Y        L   ++L   LF +  L     T+T   
Sbjct: 507 ASVLNQLGNDFALKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLNLPPIKKTKTGYS 565

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316
           T   VL   K  +P   ++ + R  A       +  L+E +  DGR+    LQ L A  T
Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLECIQPDGRIHTRYLQTLTA--T 622

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +R+ E                          +R   + S     
Sbjct: 623 GRLSSVDPNLQNIP--TRTDE-----------------------GKQIRKAFVPSTKDGY 657

Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
           + + D + +E RVLA ++G++   +AF++G D++  T  + F++ +P +VT   R   K 
Sbjct: 658 IFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKA 717

Query: 435 MELALGY 441
           +   + Y
Sbjct: 718 VNFGIVY 724


>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
 gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
          Length = 1027

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R+   A  EG  L+ AD + IE RVLA  +G++  + A+    D++    A    +  
Sbjct: 781 AIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHTRVAAEVNGIEE 840

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++VT D R I K +   + Y  G   F  +A T G++
Sbjct: 841 SEVTSDLRRIAKTINFGIVY--GQSPF-GLAKTLGIS 874


>gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
 gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
          Length = 885

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423
           ++ V + EG ++  +D + +E RVLA + G++   + F+ GED++ +T  R F++ A A+
Sbjct: 646 KAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAE 705

Query: 424 VTKDQRAIGKVMELALGY 441
           + ++ R   K +   + Y
Sbjct: 706 IDRNMRRRAKAVNFGIVY 723


>gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48]
 gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48]
          Length = 953

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R+  +A  G KL+ AD + IE R+LA +       KAF+ G D++  T +  F V    
Sbjct: 710 IRTAFVARAGHKLISADYSQIELRLLAHIGDIGQLKKAFQDGIDIHALTASEMFGVPVEG 769

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  + R   K +   + Y  G  AF  + +  G++       +KT
Sbjct: 770 MPSEVRRRAKAINFGIIY--GISAF-GLGNQLGIDNQEAGRYIKT 811


>gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 516

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 11/93 (11%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           I   +RS V+A  G   VVAD   +E R+LA M+G++ ++ A    +DLY    A +F  
Sbjct: 290 IPKTMRSSVVADPGHVFVVADAGQLEPRILAAMSGDR-RMMAAAGDDDLYALVGAEAFG- 347

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
                    RA  KV  L + Y  GA A +  A
Sbjct: 348 -------GDRAKAKVAILGVLY--GATAGEAKA 371


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  ++AF  G D++ +T  R F +  P  VT + R   K 
Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRRNAKA 712

Query: 435 MELALGY 441
           +   + Y
Sbjct: 713 VNFGVVY 719


>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
 gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
          Length = 853

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 25/108 (23%)

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
           + A+ TGR S      QN+P  S+  E+                         +RS  IA
Sbjct: 587 MTATATGRLSSSNPNLQNIPIRSKDGEK-------------------------IRSAFIA 621

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
            +G KL+ AD + +E ++LA +A  +   +AF  G D++V T  + F 
Sbjct: 622 EKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIFG 669


>gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031]
 gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031]
          Length = 877

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYMQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG']
          Length = 872

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386
            R H + +Q +T      +S+P+ LQ I         +R C IA E + L+ AD + IE 
Sbjct: 598 GRLHGQFNQTVTATGRLSSSNPN-LQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIEL 656

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA  + +   +  FE  ED++  T AR     P  VT + R   K +   + Y  G  
Sbjct: 657 RLLAHFSEDPELMAVFERNEDIHART-ARLLFGDP--VTPETRRKAKTINFGILY--GMS 711

Query: 447 AF 448
           AF
Sbjct: 712 AF 713


>gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545]
          Length = 877

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYMQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA   KKL+ AD + IE R+LA +A      +AF+   D++    +  F V   +
Sbjct: 484 IRRAFIAPPTKKLISADYSQIELRILAHVAQINPLYQAFKNSLDIHTLVASEIFGVKIEE 543

Query: 424 VTKDQRAIGKVMELALGY 441
           V+   R   K +  ++ Y
Sbjct: 544 VSSHMRQHAKTINFSIIY 561


>gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 895

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           +  AD + IE R+LA ++G++  + AF    D++  T A  F V P QVT   R   K +
Sbjct: 668 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 727

Query: 436 ELALGY 441
              + Y
Sbjct: 728 NFGIVY 733


>gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA]
 gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA]
          Length = 877

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYMQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|194432078|ref|ZP_03064367.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
 gi|194419607|gb|EDX35687.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
          Length = 72

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 4  LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
          L+ D ET   I +T  G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 6  LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAI 62


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382
           P   R H   +Q++       +SDP+ LQ I           ++ +   E  +L+ AD +
Sbjct: 614 PETGRIHASFNQVVAATGRLSSSDPN-LQNIPVRTQEGRQIRKAFIPQDENWRLLCADYS 672

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+LA ++ +    +AF  G D++    +  F V   QV  D R   K +   + Y
Sbjct: 673 QIELRILAHLSQDVALSQAFREGADIHTAVASDIFRVPHDQVDSDMRRTAKAVNFGVIY 731


>gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104]
 gi|332204058|gb|EGJ18123.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47901]
          Length = 877

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYMQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 474

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IAS  +  L+  D + IE R+LA  + ++  ++AF  G D+++ T    F    
Sbjct: 236 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 292

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             + K++R+I K +   L Y  G+K   K++ T  ++LN
Sbjct: 293 GDLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 328


>gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278]
 gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA+ G KLV AD + IE R+LA +A      +AF+ G D++  T +  F V    
Sbjct: 791 IRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 850

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +  + R   K +   + Y  G  AF
Sbjct: 851 MPSEVRRRAKAINFGIIY--GISAF 873


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 25/157 (15%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   ++ DG++  +      + TGR S      QN+P       E+ ++   +P +    
Sbjct: 597 LKHVIDEDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF--VPNN---- 649

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                         VI S       AD + IE RVLA +A ++  + AF+  +D++  T 
Sbjct: 650 -----------EESVIFS-------ADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITA 691

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           +  F V   +VT   R+  K +   + Y  GA +  K
Sbjct: 692 SEVFKVHIDEVTPLMRSNAKAVNFGIVYGIGAFSLSK 728


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 27/180 (15%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A EGKKL+  D + IE R+LA    ++  ++AF   +D+++ T    F    A 
Sbjct: 667 IREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFMQDKDIHMQTAIALFGEEDAP 726

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTG------------------------LNL 459
           +   +R + K +   L Y  G K   +    T                         ++ 
Sbjct: 727 L---KRNVAKTVNFGLLYGMGQKKLSETLKITTAEAKEIIERYFSSFPSVKSYFRSIVDF 783

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +  A  V+T      + D E+     +  +   A+  +F G+A + +K +  + H  + +
Sbjct: 784 SKEAGYVETLLKRRRYFDYESASPMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIED 843


>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
 gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
          Length = 875

 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 44/214 (20%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A++ DG++         + TGR S      QN+P       E                  
Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634

Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I + G  +++ AD + IE RVLA ++ ++  + AF   +D++  T + 
Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R   K +   + Y  G       + +  LN+        T    +++
Sbjct: 688 VFKVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734

Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505
            DA  E +   +   EN  E AIE  ++ T   R
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAIEKGYVSTILNR 768


>gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597]
 gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 116/278 (41%), Gaps = 41/278 (14%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +LE L   EQ L ++   +   G  V    +    T N++V +E  KL QE+  L  G  
Sbjct: 469 QLELLYDMEQPLAFVLAKMEIAGITVKKETLLEMQTENELV-IE--KLTQEIYELA-GEE 524

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
            +    ++L   LF + GL LE   +T     T   VL     + P   ++ + R  A  
Sbjct: 525 FNINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKI 584

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L + + +DG++  T      ++TGR S      QN+P        L+Q    
Sbjct: 585 QSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPV------RLEQ---- 632

Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                             +R   +   E   L+ +D + IE RVLA ++ ++  +KAF+ 
Sbjct: 633 ---------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQE 677

Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
           G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 678 GADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVY 715


>gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 1/112 (0%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVL 389
           + ++ H   +Q+ T      +  P+  QI     +R   I SE    ++AD   IE ++ 
Sbjct: 19  QTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQQNIREIFIPSENNIFIIADFKQIELKIA 78

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           A +  ++  LKA+    DL+  T +        ++ K+ R + K +   L Y
Sbjct: 79  AEITNDEIMLKAYNNNIDLHTLTASIITKKGIDEINKEDRHVAKAINFGLLY 130


>gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
 gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
          Length = 643

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 86/228 (37%), Gaps = 42/228 (18%)

Query: 294 LVEAMNSDGRLRGTLQFLGASR-----------TGRWSGCVFPPQNLPRPSRSHEELDQI 342
           L+E       +  +  FLG +R           TGR S      QN+PR   SHE  D  
Sbjct: 328 LLEYFRPQNGVSESCNFLGKNRLYTVWNQTMTVTGRLSSSNPNLQNIPR---SHEFEDLG 384

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
           +  L  +  S   P+ + S C            LV  D   +E RVLA   G     ++F
Sbjct: 385 VISLRKAFIS---PI-LDSHC------------LVSVDYRQVEIRVLAHFVGPGALRRSF 428

Query: 403 ET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
              G D+Y    A     A   VTK++R   KV  LAL Y  G     +    T      
Sbjct: 429 SVDGADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVYGSGIHLLARQMGVTTTVAQG 488

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE-DLFIGTACERVKK 508
           F    + N A  E E      RWM      HA +   ++ T C+R +K
Sbjct: 489 FKR--QFNYAFPELE------RWMVRVW--HAAKGKKYVETICKRRRK 526


>gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
          Length = 875

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 44/214 (20%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A++ DG++         + TGR S      QN+P       E                  
Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634

Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I + G  +++ AD + IE RVLA ++ ++  + AF   +D++  T + 
Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R   K +   + Y  G       + +  LN+        T    +++
Sbjct: 688 VFKVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734

Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505
            DA  E +   +   EN  E AIE  ++ T   R
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAIEKGYVSTILNR 768


>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255]
 gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
          Length = 932

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDP----LQIISDC---VRSCVIASEGKKLVVADLA 382
           P   R H     +I+   T   S  DP    + I S+    +R   IA EG  L+  D +
Sbjct: 653 PNTGRVHTSY--VISGASTGRLSSTDPNLQNIPIRSEAGRKIREAFIAEEGNVLLSLDYS 710

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            IE R+LA +A      +AF  G+D++  T ++ FNV
Sbjct: 711 QIELRILAHIAKIDTLKQAFHEGQDIHALTASQMFNV 747


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 9/131 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377
            P   LP   R H       T      +S+P+ LQ I         +R+  IA +G  L+
Sbjct: 680 LPYYILPETGRVHTNYSLATTSTGRLSSSEPN-LQNIPIRTPEGRKIRTAFIAPKGCVLL 738

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA +A      +AF   +D++  T ++ F VA   +  D R   K +  
Sbjct: 739 SADYSQIELRILAHIANITALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINF 798

Query: 438 ALGYQGGAKAF 448
            + Y  G  AF
Sbjct: 799 GIIY--GISAF 807


>gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
 gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
          Length = 987

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  L+  D + IE R++A MAG     +AF  G D++  T ++ F V   Q
Sbjct: 748 IRRAFVARPGHLLLSVDYSQIELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQ 807

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 808 MTSEIRRKAKAINFGIIY 825


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 30/144 (20%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +TL   M++ GR+  T   + ++ TGR S      QN+P   R+ E              
Sbjct: 687 DTLPGHMDAQGRIH-TSYSMASTTTGRLSSSEPNLQNIP--VRTEE-------------- 729

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R+  +A  G  LV AD + IE R+LA +A      +AF  G D++  
Sbjct: 730 ---------GRAIRTAFVAPAGHSLVSADYSQIELRILAHIADIPQLKEAFREGLDIHAM 780

Query: 412 TYARSFNVA----PAQVTKDQRAI 431
           T +  F V     P+++ +  +AI
Sbjct: 781 TASEMFGVPVEGMPSEIRRRAKAI 804


>gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
 gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421
           +R   + S EG K+  +D + IE RVL  ++ ++   +AF  G+D++ +T  R F + +P
Sbjct: 645 IRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSP 704

Query: 422 AQVTKDQRAIGKVMELALGY 441
            +V+ + R   K +   + Y
Sbjct: 705 EEVSSEMRRRAKAVNFGIVY 724


>gi|332364956|gb|EGJ42724.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK355]
          Length = 880

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +D ++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADSKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 129/339 (38%), Gaps = 49/339 (14%)

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           LK  + ++EE   LI    KG    C+ D   P          EY   D  +T ++    
Sbjct: 476 LKYKTVRIEE---LIG--PKGRKQLCMRDVPIPQ-------VAEYAAEDADITLKLKNYF 523

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI----VDVERTKLDQELESLTYGLVS 231
            P   KE         +    Y +++ L + L ++    V ++   L Q  E LT     
Sbjct: 524 APCLDKE--------GLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELT----- 570

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
               L+KL+  ++   G+     +      VL  + K+  +A +        S   + K+
Sbjct: 571 --TALKKLEKEIYELAGIKFNINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKM 628

Query: 292 NT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            +   +VE +         L++ G  +         P    P   + H   +Q +T    
Sbjct: 629 RSKHPVVEKL---------LEYRGLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGR 679

Query: 349 SITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             +++P+   I     +   +R    A +E      AD + IE R++A ++ +   ++AF
Sbjct: 680 LSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIEAF 739

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            +G D++  T A+ + +   +VT D R   K     + Y
Sbjct: 740 RSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 778


>gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046]
          Length = 876

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434
           L  AD + IE RVLA M G++  ++AF+ G D++  T    FN+  P +VT   R   K 
Sbjct: 648 LFAADYSQIELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKA 707

Query: 435 MELALGY 441
           +   + Y
Sbjct: 708 VNFGIVY 714


>gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75]
          Length = 893

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IAS  +  L+  D + IE R+LA  + ++  ++AF  G D+++ T    F    
Sbjct: 655 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 711

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             + K++R+I K +   L Y  G+K   K++ T  ++LN
Sbjct: 712 GDLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 747


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++C +A EG   +  D + IE R+LA  + ++  L+AF   ED++  T    F     + 
Sbjct: 649 KTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDEDIHAKTAIMIF----GES 704

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQK 450
               R+I K +   L Y  G K   +
Sbjct: 705 NYHTRSIAKSINFGLIYGMGYKTLSQ 730


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 24/119 (20%)

Query: 4   LFIDFETRSPIDLTKC--GICKYAEDVCVILFA-------------FGFDDHPVELWDCV 48
           L IDFET +    + C  G+C+  E+  V+  A             F    H +   D V
Sbjct: 8   LAIDFETANEQRASACSIGLCR-VENGRVVRTAEYLIRPPELRFTPFTIAIHGIRPEDVV 66

Query: 49  HDPVMPQV---LKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
             P  P +   ++  LE     ++AHN+ F+ +VL+A    + L +P H ++CTLV AR
Sbjct: 67  DAPEFPDIWDAMRPELEGA--VLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVAAR 123


>gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
 gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
          Length = 889

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 524 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 582

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 583 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 640

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 641 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 675

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 676 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 727


>gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397]
 gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715


>gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
 gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
          Length = 887

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715


>gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455]
 gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455]
          Length = 870

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 505 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 563

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 564 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 621

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 622 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 656

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 657 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 708


>gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585]
 gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715


>gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
 gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae
           TIGR4]
 gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I
 gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715


>gi|332638560|ref|ZP_08417423.1| DNA polymerase I [Weissella cibaria KACC 11862]
          Length = 904

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASE-GKKLVVADLAGIEA 386
           S+ H    Q +T      + DP+    P++I     +R   +  E G +++ AD + IE 
Sbjct: 627 SKVHTRYLQTLTQTGRLSSVDPNLQNIPVRIEEGRRIRKAFVPREKGWRILSADYSQIEL 686

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           RVLA + G++   +AF  GED++  T  R F + P
Sbjct: 687 RVLAHITGDKHLQEAFINGEDIHAATARRIFGIGP 721


>gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6]
 gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715


>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
 gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
          Length = 875

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A++ DG++         + TGR S      QN+P       E                  
Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634

Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I + G  +++ AD + IE RVLA ++ ++  + AF   +D++  T + 
Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R+  K +   + Y  G       + +  LN+        T    +++
Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734

Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505
            DA  E +   +   EN  E A+E  ++ T   R
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768


>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
 gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
          Length = 875

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A++ DG++         + TGR S      QN+P       E                  
Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634

Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I + G  +++ AD + IE RVLA ++ ++  + AF   +D++  T + 
Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R+  K +   + Y  G       + +  LN+        T    +++
Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734

Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505
            DA  E +   +   EN  E A+E  ++ T   R
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768


>gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1]
 gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1]
          Length = 765

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 350 ITSDPDPLQII---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            +SD   LQ I   +  +R   I  +G  L+  D +  E R LA M+G++  +KA++ G+
Sbjct: 425 FSSDSPNLQNIPSHNKDIRKMFIPDDGNILIGGDYSQQEPRSLAHMSGDEKMIKAYKNGK 484

Query: 407 DLYVTTYARSFNV 419
           D+Y T  +  + V
Sbjct: 485 DIYATIASYVYKV 497


>gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
 gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
          Length = 889

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 524 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 582

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 583 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 640

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 641 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 675

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 676 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 727


>gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974]
 gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
 gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
          Length = 875

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A++ DG++         + TGR S      QN+P       E                  
Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634

Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I + G  +++ AD + IE RVLA ++ ++  + AF   +D++  T + 
Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R+  K +   + Y  G       + +  LN+        T    +++
Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734

Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505
            DA  E +   +   EN  E A+E  ++ T   R
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768


>gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39]
 gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I
 gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
 gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
          Length = 889

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 717 NAKAVNFGVVY 727


>gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 562

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           I   VR  V+A  G +LVVAD   +E RVLA ++ +   ++   +G DLY T   R+F+
Sbjct: 315 IPKVVRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGSGRDLYATLSDRAFS 373


>gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 92  KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 147

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             + R++ K +   L Y  G K       T   NL   A+L K+
Sbjct: 148 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEANLAKS 184


>gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715


>gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
 gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
          Length = 889

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 717 NAKAVNFGVVY 727


>gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
 gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
          Length = 870

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 505 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 563

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 564 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 621

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 622 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 656

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 657 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 708


>gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
 gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
          Length = 870

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 505 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 563

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 564 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 621

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 622 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 656

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 657 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 708


>gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1]
 gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1]
          Length = 899

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IAS  +  L+  D + IE R+LA  + ++  ++AF  G D+++ T    F    
Sbjct: 661 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 717

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             + K++R+I K +   L Y  G+K   K++ T  ++LN
Sbjct: 718 GDLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 753


>gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
 gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
          Length = 640

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 21/135 (15%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR-------S 416
           VR  +IA EG ++  AD +G E+R++A  + +   ++ F    + +  T A         
Sbjct: 383 VRKSMIAPEGYEIYEADASGQESRLMALRSKDPVMIEIFSKDMNFHSMTGASIIGEDYSD 442

Query: 417 FNVA------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA---STTGLNLNTFAHLVK 467
           F V             +QR +GK+  L+  Y+ G KA  + A     T L + T   LV+
Sbjct: 443 FQVKYKAEGDEGGYYTEQRQLGKLTNLSCNYRIGGKALSQKAFLDYDTFLTVQTGLFLVQ 502

Query: 468 T-----NSAPEEWED 477
           T        P+ WED
Sbjct: 503 TFNRTYKGVPQYWED 517


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 113/295 (38%), Gaps = 33/295 (11%)

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI----VDV 213
            EY   D  +T ++     P   KE         +    Y +++ L + L ++    V +
Sbjct: 506 AEYAAEDADITLKLKNYFTPCLEKE--------GLESLFYDIEMPLIYVLAEMEYTGVTL 557

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           +   L Q  E LT         L+KL+  ++   G+     +      VL  + K+  +A
Sbjct: 558 DTVALKQSSEELT-------TALKKLEKEIYELAGMKFNINSARQVGEVLFDHLKIEEKA 610

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332
            +        S         ++E M S   + G L ++ G  +         P    P  
Sbjct: 611 RKTKTGSYSTSEE-------ILEKMRSKHPVVGKLLEYRGLKKLLSTYIDALPELINPET 663

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEA 386
            + H   +Q +T      +++P+   I     +   +R    A +E      AD + IE 
Sbjct: 664 GKIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIEL 723

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A ++ +   ++AF +G D++  T A+ + +   +VT D R   K     + Y
Sbjct: 724 RIMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 778


>gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 924

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQ 428
           + E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A+ VT + 
Sbjct: 690 SQEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAEDVTAND 749

Query: 429 RAIGKVMELALGY 441
           R   K +   + Y
Sbjct: 750 RRNAKAVNFGIVY 762


>gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
 gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 645 ENSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRR 704

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 705 NAKAVNFGVVY 715


>gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
 gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
          Length = 889

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IAS  +  L+  D + IE R+LA  + ++  ++AF  G D+++ T    F    
Sbjct: 651 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 707

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             + K++R+I K +   L Y  G+K   K++ T  ++LN
Sbjct: 708 GDLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 743


>gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54]
 gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715


>gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
 gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA- 420
            +R   +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  
Sbjct: 635 LIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIER 694

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P  VT + R   K +   + Y
Sbjct: 695 PEDVTPNDRRNAKAVNFGVVY 715


>gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 10/125 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PL--QIISDCVRSCVIASEGKKLVVADLAG 383
           P   R H   +Q IT      +S+P+    P+  ++  +  R+ + ++ G  L+ AD + 
Sbjct: 669 PLTGRVHTSFNQSITATGRLSSSNPNLQNIPIRTELGKEIRRAFIPSNPGNLLLSADYSQ 728

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+ A ++G+   ++AF   ED++  T    F+    ++T D R   K  E+  G   
Sbjct: 729 IELRIAAELSGDPMLIEAFRNHEDIHAATARVIFDT--KEITPDMRR--KAKEVNFGVLY 784

Query: 444 GAKAF 448
           G + F
Sbjct: 785 GIQPF 789


>gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457]
 gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457]
          Length = 575

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 210 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 268

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 269 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIP- 325

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 326 -----ARLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 361

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 362 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 413


>gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141]
          Length = 877

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           KL QE+  L  G   +    ++L   LF + GL LE   +T     T   VL     + P
Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A   +   +  L + + +DG++  T      ++TGR S      QN+P 
Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
                  L+Q                      +R   +   E   L+ +D + IE RVLA
Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
            ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y
Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715


>gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus]
          Length = 848

 Score = 41.2 bits (95), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422
           R+  ++SEG   + AD + IE R+LA ++G+   LK F+  E  D++ T  ++  ++   
Sbjct: 591 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 650

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +VT   R   K +  ++ Y  G    +++A+  G+ +    H ++
Sbjct: 651 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 692


>gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 889

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 717 NAKAVNFGVVY 727


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           PR  R H      +T      +SDP+ LQ I         +R   IA  G  L+ AD + 
Sbjct: 647 PRTGRVHTSFALALTTTGRLSSSDPN-LQNIPIRSEEGRKIRHAFIAEPGHVLLSADYSQ 705

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           IE R++A +A  +  ++AF  G D++  T A+ F V
Sbjct: 706 IELRLVAHVACIKGLIQAFHDGADIHAITAAQVFGV 741


>gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 871

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 57/113 (50%), Gaps = 5/113 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q +T      +++P+    P+++ +   +R   +  E    V AD + IE R+
Sbjct: 597 RIHGKFNQTVTATGRISSTEPNLQNIPVRMELGRLIRKVFVPEEDYVFVDADYSQIELRI 656

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           LA  +G++  + A++   D++  T ++ F++   +VT  +R   K +   + Y
Sbjct: 657 LAHCSGDESLISAYKEARDIHRITASQVFHIPFDEVTDLERRNAKAVNFGIVY 709


>gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302]
 gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302]
          Length = 680

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 448 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 507

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 508 NAKAVNFGVVY 518


>gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 566

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT------TY 413
           I   +RSC  A  G KLVVAD A +E RVL  ++G++ +L       DLY        + 
Sbjct: 312 IPRALRSCASADPGWKLVVADGAQLEPRVLTALSGDR-RLAEVAAATDLYARLAEALFSG 370

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            R   + P   T+D R+  K+  L+  Y G
Sbjct: 371 TRYVPLRPGD-TRDDRSRAKIAMLSAMYGG 399


>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
 gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
          Length = 1023

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R   IA+ G KLV AD + IE R+LA +A      +AF  G D++  T +  F V    
Sbjct: 780 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPIKG 839

Query: 421 -PAQVTKDQRAI 431
            P+++ +  +AI
Sbjct: 840 MPSEIRRRAKAI 851


>gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
 gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q IT      ++DP+   I     +   +R   +   G   V AD + IE RV
Sbjct: 606 RIHGSFNQTITATGRISSTDPNLQNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRV 665

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA M+G++  ++++ T  D++  T A+ F+V   +VT + R   K +   + Y  G  AF
Sbjct: 666 LASMSGDEKLIESYHTAADIHAATAAQVFHVPLDKVTPELRRNAKAVNFGVVY--GISAF 723


>gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
 gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
          Length = 889

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 717 NAKAVNFGVVY 727


>gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321]
 gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321]
          Length = 877

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA- 420
            +R   +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  
Sbjct: 635 LIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIER 694

Query: 421 PAQVTKDQRAIGKVMELALGY 441
           P  VT + R   K +   + Y
Sbjct: 695 PEDVTANDRRNAKAVNFGVVY 715


>gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 45/250 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLE--DLT 255
           + VER  L       ++ LESLT   Y L      +   ++L T LF + GL LE    T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 256 ETTCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           +T     +   ++L P A  +       + S+     +  L EA+ +DG++  T      
Sbjct: 555 KTGYSTAVDVLERLAPIASIVSKILEYRQISKLQSTYIIGLQEAIAADGKIH-TRYVQDL 613

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P        L+Q                      +R   +    
Sbjct: 614 TQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEWA 648

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAI 431
              L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R  
Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708

Query: 432 GKVMELALGY 441
            K +   + Y
Sbjct: 709 AKAVNFGVVY 718


>gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300]
 gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300]
          Length = 889

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 717 NAKAVNFGVVY 727


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           ++  I  E   L+ AD + IE RVLA +  E    +AF    D++  T +R F V    V
Sbjct: 679 KNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAFSRDIDIHALTASRLFGVPIESV 738

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             + R +GK +   + Y  G   F ++A  TGL
Sbjct: 739 DDNMRRMGKTINFGIIY--GMSGF-RLARDTGL 768


>gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus]
          Length = 900

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARS 416
           I++   R+  ++SEG   + AD + IE R+LA ++G+   LK F+  E  D++ T  ++ 
Sbjct: 603 ILTISPRTMFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQW 662

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            ++    VT  +R   K +  ++ Y  G    +++A+  G+ +   A  ++
Sbjct: 663 KDIPSECVTHVEREQTKKVVYSVVYGAGK---ERLAACLGVTVQEAARFLE 710


>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
 gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
          Length = 875

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A++ DG++         + TGR S      QN+P       E                  
Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634

Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I + G  +++ AD + IE RVLA ++ ++  + AF   +D++  T + 
Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R+  K +   + Y  G       + +  LN+        T    +++
Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734

Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505
            DA  E +   +   EN  E A+E  ++ T   R
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768


>gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
 gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
          Length = 944

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 31/158 (19%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L + +NS+ GR+  T   + ++ TGR S      QN+P   RS E             
Sbjct: 659 DALGKQINSNSGRIH-TFYSMISTATGRLSSSNPNLQNIP--IRSEE------------- 702

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                      + +R   +A +G KLV AD + IE R++A +AG Q    AF   +D++ 
Sbjct: 703 ----------GNAIRRAFVARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQDIHS 752

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            T  + F      + K+ R   K +   + Y  G  AF
Sbjct: 753 ITAEQIF--CTQSLDKNLRRKAKSINFGIIY--GMSAF 786


>gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334]
 gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334]
          Length = 889

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRR 716

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 717 NAKAVNFGVVY 727


>gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
 gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
          Length = 1025

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVI-ASEGKKLVVADLAGIEA 386
           R H   +Q I       ++DP+ LQ I +       +R+  I   E + L+  D + +E 
Sbjct: 749 RIHTTFEQTIAATGRLSSADPN-LQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A  + ++  ++AF +G D +    +  + +   QVT DQR+  K M   L Y
Sbjct: 808 RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAY 862


>gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143]
 gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143]
          Length = 877

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 645 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 704

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 705 NAKAVNFGVVY 715


>gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu
          Length = 864

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422
           R+  ++SEG   + AD + IE R+LA ++G+   LK F+  E  D++ T  ++  ++   
Sbjct: 607 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 666

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +VT   R   K +  ++ Y  G    +++A+  G+ +    H ++
Sbjct: 667 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 708


>gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster]
          Length = 2059

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 41/266 (15%)

Query: 199  VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            +++ +  TL Q+  V      Q L+ L   +V+    ++K++T ++ + G      +   
Sbjct: 1653 IEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVA---VMKKVETKIYEQHGSRFNLGSSQA 1709

Query: 259  CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR-TG 317
              +VL  ++K           R+  SR  + KLN+ +  +            LG  + +G
Sbjct: 1710 VAKVLGLHRKA--------KGRVTTSRQVLEKLNSPISHL-----------ILGYRKLSG 1750

Query: 318  RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP----------LQIISDCVR-S 366
              +  + P     +  R H    Q IT+  T   S  +P          +Q+ SD V  S
Sbjct: 1751 LLAKSIQPLMECCQADRIH---GQSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHIS 1807

Query: 367  C----VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            C    +   E + L+ AD   +E R+LA M+ ++  L+  ++ +DL++   A    +  +
Sbjct: 1808 CRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEES 1867

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAF 448
            +VT+D R   K +   + Y  G ++ 
Sbjct: 1868 EVTQDLRNSTKQVCYGIVYGMGMRSL 1893


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I++ G KL+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 747 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 806

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 807 MPSEVRRRAKAI 818


>gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus]
          Length = 866

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422
           R+  ++SEG   + AD + IE R+LA ++G+   LK F+  E  D++ T  ++  ++   
Sbjct: 609 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 668

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +VT   R   K +  ++ Y  G    +++A+  G+ +    H ++
Sbjct: 669 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 710


>gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus]
 gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus]
          Length = 866

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422
           R+  ++SEG   + AD + IE R+LA ++G+   LK F+  E  D++ T  ++  ++   
Sbjct: 609 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 668

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +VT   R   K +  ++ Y  G    +++A+  G+ +    H ++
Sbjct: 669 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 710


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  LV  D + IE R+LA +A      +AF  G+D++  T +  F+V   +
Sbjct: 698 IREAFVAEPGNVLVSLDYSQIELRILAHIADIDALRQAFRDGQDIHAMTASEMFDVPLDE 757

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 758 MTPEIRRQAKAINFGVIY 775


>gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Streptococcus pyogenes M49 591]
          Length = 418

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 186 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 245

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 246 NAKAVNFGIVY 256


>gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
 gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
          Length = 889

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 717 NAKAVNFGVVY 727


>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 997

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  I  +  +LV AD + IE RVLA +A      +AF  G D++  T +  FNV    
Sbjct: 754 IRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 813

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 814 MPSEVRRRAKAI 825


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster]
 gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster]
          Length = 2059

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 41/266 (15%)

Query: 199  VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            +++ +  TL Q+  V      Q L+ L   +V+    ++K++T ++ + G      +   
Sbjct: 1653 IEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVA---VMKKVETKIYEQHGSRFNLGSSQA 1709

Query: 259  CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR-TG 317
              +VL  ++K           R+  SR  + KLN+ +  +            LG  + +G
Sbjct: 1710 VAKVLGLHRKA--------KGRVTTSRQVLEKLNSPISHL-----------ILGYRKLSG 1750

Query: 318  RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP----------LQIISDCVR-S 366
              +  + P     +  R H    Q IT+  T   S  +P          +Q+ SD V  S
Sbjct: 1751 LLAKSIQPLMECCQADRIH---GQSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHIS 1807

Query: 367  C----VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            C    +   E + L+ AD   +E R+LA M+ ++  L+  ++ +DL++   A    +  +
Sbjct: 1808 CRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEES 1867

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAF 448
            +VT+D R   K +   + Y  G ++ 
Sbjct: 1868 EVTQDLRNSTKQVCYGIVYGMGMRSL 1893


>gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7]
          Length = 885

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IAS  +  L+  D + IE R+LA  + ++  ++AF  G D+++ T    F    
Sbjct: 647 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 703

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            ++ K++R+I K +   L Y  G+K   K++ T  + LN
Sbjct: 704 GELAKEKRSIAKSINFGLVYGMGSK---KLSETLNIPLN 739


>gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
 gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
          Length = 889

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 717 NAKAVNFGVVY 727


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR C  A      V  D + IE R+LA  + ++  L+AF   ED++  T    F  A  Q
Sbjct: 632 VRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALLRAFANDEDIHARTAISIFGSAEGQ 691

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                RA+ K +   L Y  G+       S T
Sbjct: 692 ----NRAVAKSINFGLIYGMGSSKLANQVSIT 719


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 19/144 (13%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   + S+    L+ AD + IE R++A  + ++  ++AF+ G+D++  T ++ F V  
Sbjct: 694 AIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEAFKAGKDIHTATASKLFKVPL 753

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV +  R   K     + Y  G   F  +A   G++                 E     
Sbjct: 754 EQVDESMRRQAKTANFGIIY--GISGF-GLAQRLGIS---------------RSEAIATI 795

Query: 482 CRWMQENHPEHAIEDLFIGTACER 505
             + QE H   A  D  IG A E+
Sbjct: 796 QAYFQEFHAIKAYMDRVIGQAREQ 819


>gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24]
          Length = 905

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IAS  +  L+  D + IE R+LA  + ++  ++AF  G D+++ T    F    
Sbjct: 667 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 723

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            ++ K++R+I K +   L Y  G+K   K++ T  + LN
Sbjct: 724 EELAKEKRSIAKSINFGLVYGMGSK---KLSETLNIPLN 759


>gi|167763751|ref|ZP_02435878.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
 gi|167697867|gb|EDS14446.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
          Length = 163

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95
           H + L D    PV P V +E     + +T+VAHN  F+ + LKA F    +D P + + C
Sbjct: 55  HGLTLADTSRSPVFPAVWQEIAPRIEGLTLVAHNKAFDESCLKAVFRMYGMDYPDYDFRC 114

Query: 96  TLVLARS--NGLP 106
           TL  +R    GLP
Sbjct: 115 TLQASRRAIKGLP 127


>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
          Length = 875

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A++ DG++         + TGR S      QN+P       E                  
Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634

Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I + G  +++ AD + IE RVLA ++ ++  + AF   +D++  T + 
Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R+  K +   + Y  G       + +  LN+        T    +++
Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734

Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505
            DA  E +   +   EN  E A+E  ++ T   R
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
           pyogenes SSI-1]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      ++DP+    P+++     +R   + SE   L+  AD + 
Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K +   + Y
Sbjct: 661 IELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVY 718


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      ++DP+    P+++     +R   + SE   L+  AD + 
Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K +   + Y
Sbjct: 661 IELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVY 718


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      ++DP+    P+++     +R   + SE   L+  AD + 
Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K +   + Y
Sbjct: 661 IELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVY 718


>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
 gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
          Length = 871

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 24/129 (18%)

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P      +E+ ++       I  D D      D + SC     
Sbjct: 605 VTTTGRLSSTEPNLQNIPIKYEMGKEIRKVF------IPQDSD------DILISC----- 647

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
                  D + IE RVLA +A ++  + AFE   D++  T +  F V   +VT   R+  
Sbjct: 648 -------DYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNA 700

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 701 KAVNFGIVY 709


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386
            + H   +Q +T      ++DP+    P+++     +R   + SE G  +  AD + IE 
Sbjct: 601 GKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADYSQIEL 660

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  ++AF    D++  T    F+V   +VT + R   K +   + Y
Sbjct: 661 RVLAHIANDEKLIEAFIEDMDIHTKTAMEVFHVNANEVTSNMRRHAKAVNFGIVY 715


>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
 gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
          Length = 875

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 44/214 (20%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A++ DG++         + TGR S      QN+P       E                  
Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634

Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I + G  +++ AD + IE RVLA ++ ++  + AF   +D++  T + 
Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R   K +   + Y  G       + +  LN+        T    +++
Sbjct: 688 VFKVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734

Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505
            DA  E +   +   EN  E A+E  ++ T   R
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVNTILNR 768


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
 gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
          Length = 871

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 24/129 (18%)

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P      +E+ ++       I  D D      D + SC     
Sbjct: 605 VTTTGRLSSTEPNLQNIPIKYEMGKEIRKVF------IPQDSD------DILISC----- 647

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
                  D + IE RVLA +A ++  + AFE   D++  T +  F V   +VT   R+  
Sbjct: 648 -------DYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNA 700

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 701 KAVNFGIVY 709


>gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      ++DP+    P+++     +R   + SE   L+  AD + 
Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K +   + Y
Sbjct: 661 IELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVY 718


>gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
 gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           +R   +A++G  L+VAD   +E R+LA +A  +  L AF+ G D +  T
Sbjct: 883 IRQAFVAAQGNSLIVADYGQLELRILAHLANRKSMLDAFKAGGDFHSRT 931


>gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
 gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score = 40.8 bits (94), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 292 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 351

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 352 NAKAVNFGVVY 362


>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 871

 Score = 40.8 bits (94), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 24/129 (18%)

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P      +E+ ++       I  D D      D + SC     
Sbjct: 605 VTTTGRLSSTEPNLQNIPIKYEMGKEIRKVF------IPQDSD------DILISC----- 647

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
                  D + IE RVLA +A ++  + AFE   D++  T +  F V   +VT   R+  
Sbjct: 648 -------DYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNA 700

Query: 433 KVMELALGY 441
           K +   + Y
Sbjct: 701 KAVNFGIVY 709


>gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 893

 Score = 40.8 bits (94), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 37/213 (17%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   LF + GL +   T+T     +   +KL PQA  + ++ ++  + A LK +T ++
Sbjct: 548 KQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQA-PIVDHILQYRQLAKLK-STYID 605

Query: 297 AMNS-----DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + S     D ++    LQ L  ++TGR S      QN+P   RS E             
Sbjct: 606 GLLSVIYPKDSKIHTRFLQTL--TQTGRLSSVDPNLQNIPM--RSEE------------- 648

Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R+  + S    ++  AD + IE RVLA + G++   KAF  GED++
Sbjct: 649 ----------GRLIRTAFVPSHPNWQIFGADYSQIELRVLAHVTGDKNMQKAFLNGEDIH 698

Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
             T    F +A  A V   +R   K +   + Y
Sbjct: 699 AETARAVFGLADDAVVDPLKRRTAKAVNFGIVY 731


>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
           HF4000_APKG10H12]
          Length = 891

 Score = 40.8 bits (94), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384
           P   R H   +Q +       +SDP+    P++  +   +R   +A +G  L+ AD + I
Sbjct: 615 PDTGRVHTSFNQAVAATGRLSSSDPNLQNIPIRTPLGREIRRAFVARDGHVLISADYSQI 674

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +    +AF   ED++  T    F         + R   K++  AL Y  G
Sbjct: 675 ELRVLAHLSADTALTQAFIRNEDIHDKTALHVFGPDSGLDAHELRRRAKIINYALLY--G 732

Query: 445 AKAF 448
             AF
Sbjct: 733 KTAF 736


>gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511]
 gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511]
          Length = 730

 Score = 40.8 bits (94), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 19/143 (13%)

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           N DGR+ G+    G + T R S      Q LP                  + TS+P    
Sbjct: 376 NKDGRVHGSFNATG-TETTRLSSNNPNMQQLP------------------AKTSNPKRFD 416

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 R    A E   L+  D + +E R+LA  AG++   +AF  G DL+  T +  + 
Sbjct: 417 YQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWG 476

Query: 419 VAPAQVTKDQRAIGKVMELALGY 441
           +   +V  + R   K +   + Y
Sbjct: 477 MPVDKVPAEFRKKAKAVNFGIAY 499


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score = 40.8 bits (94), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 574 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 633

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 634 NAKAVNFGIVY 644


>gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317]
          Length = 877

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 645 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRR 704

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 705 NAKAVNFGVVY 715


>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
 gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
          Length = 932

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  LV  D + IE R+LA +AG      AF  G D++  T +  F+V   +
Sbjct: 692 IREAFVAEPGHVLVSLDYSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDE 751

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 752 MTPEVRRQAKAINFGVIY 769


>gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
 gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
          Length = 880

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDKHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 34/122 (27%)

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P+A+ +        RSA++K    ++A  SDGR+ G +   G + TGR           
Sbjct: 98  VPEAVLILEYLTLGKRSAMVK--GWLDAYESDGRIHGYVNSNG-TVTGR----------- 143

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARV 388
                        +TH      S+P+  QI S    RSC +  +G+KLV  D +G+E R+
Sbjct: 144 -------------MTH------SNPNMAQIPSGAEYRSCFVVPQGRKLVGVDASGLELRM 184

Query: 389 LA 390
           LA
Sbjct: 185 LA 186


>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
 gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
          Length = 920

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383
           P+    H   +Q +T      +SDP+ LQ I         +R C I         AD + 
Sbjct: 642 PQTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRTDDGKEIRKCFIPEPDCLFFSADYSQ 700

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R++A ++ ++  ++AF  G D++  T A+ ++     VT  QR   K     + Y
Sbjct: 701 IELRIMAHLSEDENMMEAFRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIY 758


>gi|319900813|ref|YP_004160541.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
 gi|319415844|gb|ADV42955.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
          Length = 165

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95
           H + L D    PV P V +E     + + +VAHN  F+ + LKA F    +D P + + C
Sbjct: 55  HGLTLADTAQAPVFPDVWREISPRIEGLPLVAHNKAFDESCLKAVFRTYGMDYPDYDFYC 114

Query: 96  TLVLARS--NGLP 106
           TL  +R    GLP
Sbjct: 115 TLQASRRVIKGLP 127


>gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 883

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 38/254 (14%)

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           ++ ++E+T   +  E    G        ++L   LF +  L +   T+T     +   +K
Sbjct: 518 RLAEIEQTIFQEAGEEFNIG------SPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEK 571

Query: 269 LTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           L P A  V N  N  + S+     ++ L++ ++ +     T      ++TGR S      
Sbjct: 572 LAPDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNL 631

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385
           QN+P   RS E                          +R   I S E  ++  +D + IE
Sbjct: 632 QNIP--VRSEE-----------------------GRLIRQAFIPSHENWQIWSSDYSQIE 666

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGG 444
            RVLA + G++   +AF  GED++ TT  R F +A    VT + R   K +   + Y  G
Sbjct: 667 LRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVY--G 724

Query: 445 AKAFQKMASTTGLN 458
              +  +A+ TG++
Sbjct: 725 ISDY-GLANNTGIS 737


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  ++ AD + IE R+ A MA      +AF  GED++  T  + F     +
Sbjct: 688 IRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHAATAQQLFG----E 743

Query: 424 VTKDQRAIGKVMELALGY 441
           V +D R   K +  A+ Y
Sbjct: 744 VNRDTRGRAKTINFAILY 761


>gi|189465280|ref|ZP_03014065.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
 gi|189437554|gb|EDV06539.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
          Length = 164

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFN---LDIPIHRWIC 95
           H + L D    PV P V +E     + + +VAHN  F+ + LKA F    LD P + + C
Sbjct: 55  HGLTLADTAEAPVFPVVWQEIAPLIEGLPLVAHNKGFDESCLKAVFKTYCLDYPDYEFHC 114

Query: 96  TLVLARS--NGLPS 107
           TL  AR    GLPS
Sbjct: 115 TLSTARRRIKGLPS 128


>gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS]
 gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS]
          Length = 880

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQ 428
           + E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + 
Sbjct: 646 SHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAADVTAND 705

Query: 429 RAIGKVMELALGY 441
           R   K +   + Y
Sbjct: 706 RRNAKAVNFGIVY 718


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   I SE   ++  AD + IE RVLA +A ++  + AF  G D++  T    F+V+  
Sbjct: 638 IRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKE 697

Query: 423 QVTKDQRAIGKVMELALGY 441
           +VT + R   K +   + Y
Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716


>gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 883

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 38/254 (14%)

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           ++ ++E+T   +  E    G        ++L   LF +  L +   T+T     +   +K
Sbjct: 518 RLAEIEQTIFQEAGEEFNIG------SPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEK 571

Query: 269 LTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           L P A  V N  N  + S+     ++ L++ ++ +     T      ++TGR S      
Sbjct: 572 LAPDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNL 631

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385
           QN+P   RS E                          +R   I S E  ++  +D + IE
Sbjct: 632 QNIP--VRSEE-----------------------GRLIRQAFIPSHENWQIWSSDYSQIE 666

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGG 444
            RVLA + G++   +AF  GED++ TT  R F +A    VT + R   K +   + Y  G
Sbjct: 667 LRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVY--G 724

Query: 445 AKAFQKMASTTGLN 458
              +  +A+ TG++
Sbjct: 725 ISDY-GLANNTGIS 737


>gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 893

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 37/213 (17%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   LF + GL +   T+T     +   +KL PQA  + ++ ++  + A LK +T ++
Sbjct: 548 KQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQA-PIVDHILQYRQLAKLK-STYID 605

Query: 297 AMNS-----DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + S     D ++    LQ L  ++TGR S      QN+P   RS E             
Sbjct: 606 GLLSVIYPKDSKIHTRFLQTL--TQTGRLSSVDPNLQNIPM--RSEE------------- 648

Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R+  + S    ++  AD + IE RVLA + G++   KAF  GED++
Sbjct: 649 ----------GRLIRTAFVPSHPNWQIFGADYSQIELRVLAHVTGDKNMQKAFLNGEDIH 698

Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
             T    F +A  A V   +R   K +   + Y
Sbjct: 699 AETARAVFGLADDAVVDPLKRRTAKAVNFGIVY 731


>gi|281424653|ref|ZP_06255566.1| exonuclease [Prevotella oris F0302]
 gi|281401241|gb|EFB32072.1| exonuclease [Prevotella oris F0302]
          Length = 162

 Score = 40.8 bits (94), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 46  DCVHDPVMPQVLK--EALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           D  H P+ P+V +  E+L   D+ +VAHN  F+ + LKA   C+ +D P + + CTL  +
Sbjct: 61  DTNHAPIFPEVWRKVESLI-VDLPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYCTLAQS 119

Query: 101 R 101
           R
Sbjct: 120 R 120


>gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 876

 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R    +S+   ++  AD + IE RVLA +  ++   +AF   ED++  T  + FNV P 
Sbjct: 636 IRKAFKSSDDNNVIFSADYSQIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPD 695

Query: 423 QVTKDQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 696 EVDSLMRRQAKAVNFGIVY 714


>gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   I SE   ++  AD + IE RVLA +A ++  + AF  G D++  T    F+V+  
Sbjct: 638 IRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKE 697

Query: 423 QVTKDQRAIGKVMELALGY 441
           +VT + R   K +   + Y
Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716


>gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
 gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 36/190 (18%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   LF + GL +   T+T     +   +KL  QA  + ++ ++  + A LK +T VE
Sbjct: 548 KQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQA-PIVDHILQYRQLAKLK-STYVE 605

Query: 297 AM-----NSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            +     + D ++    LQ L  ++TGR S      QN+P  +   EE  QI        
Sbjct: 606 GLLTVVHDQDSKIHTRFLQTL--TQTGRLSSVDPNLQNIPMRT---EEGRQI-------- 652

Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         R+  + SE   ++V AD + IE RVLA M G++   +AF  GED++
Sbjct: 653 --------------RTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGEDIH 698

Query: 410 VTTYARSFNV 419
             T    F +
Sbjct: 699 AETARAVFGL 708


>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
 gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I
 gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
          Length = 574

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           +  R + E  QI        ++ P+ +Q I   +R    A EG   V++D + IE R+ A
Sbjct: 305 KNGRVYPEFKQIGAVTGRMSSAHPN-IQNIHRDMRGIFKAEEGNTFVISDFSQIELRIAA 363

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
               +   L AF+ G+D++  T +        ++TK++R + K +   L Y   AK   +
Sbjct: 364 EYVKDPLMLDAFKKGKDMHRYTASVVLGKKEEEITKEERQLAKAINFGLIYGISAKGLAE 423

Query: 451 MA 452
            A
Sbjct: 424 YA 425


>gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 798

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
           A  G KLV ADL+ IE R+ AWMA E   L+ +    D++ +T A
Sbjct: 681 ARPGYKLVSADLSQIELRIAAWMANEPEMLRIYRADGDIHASTGA 725


>gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA
           polymerase [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   +AS G  LVVAD   +E R+LA + G +  ++AF+ G D +  T   + N+ P
Sbjct: 783 IRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRT---AMNMYP 837


>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
 gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
          Length = 928

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  ++ AD + IE R+ A MA      +AF  GED++  T  + F     +
Sbjct: 688 IRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHAATAQQLFG----E 743

Query: 424 VTKDQRAIGKVMELALGY 441
           V +D R   K +  A+ Y
Sbjct: 744 VNRDTRGRAKTINFAILY 761


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   +AS G  LVVAD   +E R+LA + G +  ++AF+ G D +  T   + N+ P
Sbjct: 782 IRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRT---AMNMYP 836


>gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1]
 gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1]
          Length = 608

 Score = 40.4 bits (93), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            VR C +A  G+ +V  D    E RVLA +A ++  ++AF+   DL+  T         A
Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIQAFKDNADLHQIT---------A 424

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             +   R +GK++  A  +  G       A  T
Sbjct: 425 DASGVDRKVGKMVNFAYVFGSGPSTIAAQAGIT 457


>gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
 gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
          Length = 829

 Score = 40.4 bits (93), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R    A EG   + AD + IE R+LA++A  +    A  +G DL+  T ++ F     +
Sbjct: 580 IRKIFTAKEGHHFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQIFKT--DK 637

Query: 424 VTKDQRAIGKVMELALGY 441
           +T D R   K +   + Y
Sbjct: 638 ITPDLRNKAKAVNFGIVY 655


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score = 40.4 bits (93), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 156/416 (37%), Gaps = 74/416 (17%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWIC---TLVLARSN-GLPS-ALK 110
           LK  LE+  V  +AHN  ++  VL A + +D+ PI   +    TL   R+N GL    LK
Sbjct: 470 LKPLLEDDAVLKIAHNMKYDLLVL-ARYGVDVAPIEDTMLISYTLDTGRNNHGLDELTLK 528

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +G      S     G+  I  F +        DR             EY   D  VT  
Sbjct: 529 HLGHENIPFSAVAGSGRNFIG-FAR-----VALDRAT-----------EYATEDADVTLR 571

Query: 171 IFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +++ L+P            + E+ +      +  RG  +D A+   L+     +  +L+ 
Sbjct: 572 LWRALKPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRLSGEFAQDMARLEA 631

Query: 221 ELESL---TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           ++  L   T+ L S     ++L   LF + GL     T T      +S  +        F
Sbjct: 632 DIFDLAGETFNLGSP----KQLGDILFGKMGLPGAKKTATGAWSTSASVLEDLANEGNDF 687

Query: 278 NNRMRASRSAVLKLNTLVEAM-----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             R+   R      +T  +A+        GR+  T   L A+ TGR S      QN+P  
Sbjct: 688 ARRILDWRQLSKLKSTYTDALPGFVNKETGRVH-TSYALAATTTGRLSSSDPNLQNIPVR 746

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           + +  +                         +R   +AS G  L+ AD + IE R+LA +
Sbjct: 747 NEAGRK-------------------------IRKAFVASPGHVLISADYSQIELRLLAHI 781

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A      KAF  G D++  T +  F V    +  + R   K +   + Y  G  AF
Sbjct: 782 ADIPQLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIY--GISAF 835


>gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I
          Length = 891

 Score = 40.4 bits (93), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IAS  +  L+  D + IE R+LA  + ++  ++AF  G D+++ T    F    
Sbjct: 653 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 709

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             + K++R+I K +   L Y  G+K   K++ T  ++LN
Sbjct: 710 EYLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 745


>gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
 gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
          Length = 892

 Score = 40.4 bits (93), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IAS  +  L+  D + IE R+LA  + ++  ++AF  G D+++ T    F    
Sbjct: 654 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 710

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             + K++R+I K +   L Y  G+K   K++ T  ++LN
Sbjct: 711 EYLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 746


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +   A VT + R 
Sbjct: 648 EDAVLLGSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGIVY 718


>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
 gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
          Length = 948

 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 31/151 (20%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L +A+N D GR+  +   +GA +TGR S      QN+P                P   
Sbjct: 661 DALQQAINPDTGRVHTSYSLVGA-QTGRLSSTDPNLQNIP-------------IRTP--- 703

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                    I   +R   +   G  L+ AD + IE R+ A MA      +AF  GED++ 
Sbjct: 704 ---------IGRQIREAFVPENGNVLLAADYSQIELRLAAHMADVPELKEAFAEGEDIHA 754

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            T    +     +  +D RA  K +  A+ Y
Sbjct: 755 RTAREMYG----EADRDTRARAKTINFAILY 781


>gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba]
 gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba]
          Length = 2043

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 38/229 (16%)

Query: 236  LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + KL+T ++ + G      +  T  +VL  ++K         N R+  SR  + K+N+ +
Sbjct: 1671 MRKLETKIYEQHGSRFNLGSSQTVAKVLGLHRKA--------NGRVTTSRQVLEKINSPI 1722

Query: 296  EAMNSDGRLRGTLQFLGASRT-GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              +            LG  +  G  +  + P        R H    Q IT+  T   S  
Sbjct: 1723 SQL-----------ILGYRKVAGLLAKSIQPLLKCCEADRIH---GQSITYTATGRISMT 1768

Query: 355  DP----------LQIISDCVR-SC----VIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            +P          +Q+ SD +R +C    V   E + L+ AD   +E R+LA M+ ++  L
Sbjct: 1769 EPNLQNVAKEFCIQVGSDALRIACRLPFVPKDEDRCLLSADFCQLEMRILAHMSQDKALL 1828

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            +   + +DL++   A    +  ++V++D R   K +   + Y  G ++ 
Sbjct: 1829 EVMNSPQDLFIAIAAHWNKIEESEVSQDLRNSTKHVCYGIVYGMGMRSL 1877


>gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus]
          Length = 467

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422
           R+  ++SEG   + AD + IE R+LA ++G+   LK F+  E  D++ T  ++  ++   
Sbjct: 210 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 269

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +VT   R   K +  ++ Y  G    +++A+  G+ +    H ++
Sbjct: 270 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 311


>gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 261

 Score = 40.4 bits (93), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R C I     K   AD + IE R++A ++ ++  ++AF  G D++  T ++ +  A  +
Sbjct: 22  IRKCFIPEPSCKFFSADYSQIELRIMAHLSCDENMMEAFREGFDIHRATASKIWKEAMDE 81

Query: 424 VTKDQRAIGKVMELALGY 441
           VT  QR   K     + Y
Sbjct: 82  VTDSQRKQAKQANFGIIY 99


>gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353]
          Length = 880

 Score = 40.4 bits (93), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 47/251 (18%)

Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257
           + VER  L       ++ LESLT   Y L      +   ++L T LF +  L LE   +T
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMRLPLEYTKKT 554

Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                T   VL     + P   ++   R + S+     +  L EA+ +DG++  T     
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P        L+Q                      +R   +   
Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430
               L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +  A+ VT + R 
Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDRR 707

Query: 431 IGKVMELALGY 441
             K +   + Y
Sbjct: 708 NAKAVNFGVVY 718


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            VR C +A  G+ +V  D    E RVLA +A ++  ++AF+   DL+  T         A
Sbjct: 374 MVRRCFLADSGQLMVSVDYQAQELRVLAALANDRTMIQAFKDNADLHQIT---------A 424

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             +   R +GK++  A  +  G       A  T
Sbjct: 425 DASGVDRKVGKMVNFAYVFGSGPSTIAAQAGIT 457


>gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7]
 gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7]
          Length = 870

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            + H   +Q +T      ++DP+    P++     +       E   LV  D + IE RV
Sbjct: 596 GKIHTIYNQALTQTGRLSSTDPNLQNIPVKTPEGKLIRKAFVPEYDYLVSFDYSQIELRV 655

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +AG +  +KAF   +D++  T +  F V   QV    R   K +   + Y  G   F
Sbjct: 656 LAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFGIIY--GMSDF 713

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             +A   G+++                 +A  F +   EN+PE
Sbjct: 714 -GLAEQVGVSVG----------------EAREFIKRYFENYPE 739


>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
 gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
          Length = 945

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           I   +R   +A  G  L+ AD + IE R+ A MA      +AF  GED++  T    F  
Sbjct: 701 IGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMADVPALKEAFAAGEDIHARTAMEMFGT 760

Query: 420 APAQVTKDQRAIGKVMELALGY 441
               V +D R   K +  A+ Y
Sbjct: 761 ----VDRDTRGRAKTINFAILY 778


>gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
 gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
          Length = 886

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 37/238 (15%)

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           Q+ ++E+T  ++  E    G        ++L   LF + GL +   T+T     +   +K
Sbjct: 521 QLAEIEQTIYNEAGEEFNIG------SPKQLGHILFEKMGLPVIKKTKTGYSTAVGVLEK 574

Query: 269 LTPQAIQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
           L  +A  +  N ++  + A ++   +  L++ ++ D +   T      ++TGR S     
Sbjct: 575 LAAEA-PIAENILKYRKIAKIQSTYVEGLLKVIHPDDQKVHTRYLQTLTQTGRLSSVDPN 633

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384
            QN+P   R+ E                          +R   + S    ++  +D + I
Sbjct: 634 LQNIP--VRNEE-----------------------GRAIRKAFVPSHPDWEIFSSDYSQI 668

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGY 441
           E RVLA M+ ++   +AF  G+D++  T  R F + P  +VT + R   K +   + Y
Sbjct: 669 ELRVLAHMSHDKQMQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVNFGIVY 726


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   +AS G  LVVAD   +E R+LA + G +  ++AF+ G D +  T   + N+ P
Sbjct: 782 IRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRT---AMNMYP 836


>gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum]
 gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            infantum JPCM5]
          Length = 1257

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 316  TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S CV P  QNLPR        + I   +  +   +     ++    R C +A+ G 
Sbjct: 969  TGRLS-CVEPNLQNLPR--------NGIAAAVAGNDAEEDGEEDLLG--FRRCFVATGGC 1017

Query: 375  KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             L+  D   IE RVLA + G+   + A  T  D++       F   P  V+ ++R++ K 
Sbjct: 1018 VLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP--VSTEERSLAKR 1075

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK--TNSAP 472
            +   + Y  G K    +A+  G+ ++   H+    TN+ P
Sbjct: 1076 VVFGVLYGAGPK---TLATHMGVTVDRALHITSLLTNAFP 1112


>gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1257

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 316  TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S CV P  QNLPR        + I   +  +   +     ++    R C +A+ G 
Sbjct: 969  TGRLS-CVEPNLQNLPR--------NGIAAAVAGNDAEEDGEEDLLG--FRRCFVATGGC 1017

Query: 375  KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             L+  D   IE RVLA + G+   + A  T  D++       F   P  V+ ++R++ K 
Sbjct: 1018 VLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP--VSTEERSLAKR 1075

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK--TNSAP 472
            +   + Y  G K    +A+  G+ ++   H+    TN+ P
Sbjct: 1076 VVFGVLYGAGPK---TLATHMGVTVDRALHITSLLTNAFP 1112


>gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564]
 gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564]
          Length = 877

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 35/275 (12%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +LE L   EQ L ++   +   G  V       +    D+   KL QE+  L  G   + 
Sbjct: 469 QLELLYDMEQPLAFVLAKMEIAGITVKKETLLEMQAENDLVIEKLTQEIYELA-GEEFNI 527

Query: 234 RCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              ++L   LF + GL LE   +T     T   VL     + P   ++ + R  A   + 
Sbjct: 528 NSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQST 587

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L + + +DG++  T      ++TGR S      QN+P        L+Q       
Sbjct: 588 YVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPV------RLEQ------- 632

Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D
Sbjct: 633 ------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGAD 680

Query: 408 LYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441
           ++ +T  R F +  ++ VT + R   K +   + Y
Sbjct: 681 IHTSTAMRVFGIERSEDVTANDRRNAKAVNFGVVY 715


>gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
 gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
          Length = 1012

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA+ G KLV AD + IE R+L+ +A       AF+ G D++  T +  F V    
Sbjct: 769 IRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIHAMTASEMFGVPVKD 828

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +  + R   K +   + Y  G  AF
Sbjct: 829 MPGEVRRRAKAINFGIIY--GISAF 851


>gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2]
 gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2]
          Length = 1008

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 23/149 (15%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R   IA +G KLV AD + IE R+LA +A      +AF    D++  T +  F V    
Sbjct: 765 IRRAFIAEKGHKLVSADYSQIELRLLAEIADIPVLKQAFHDKLDIHAMTASEMFGVPVKD 824

Query: 421 -PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN----SAPEEW 475
            PA+V +  +AI        G   G  AF  +A+  G+        +K           +
Sbjct: 825 MPAEVRRRAKAIN------FGIIYGISAF-GLANQLGIPREEAGAYIKKYFERFPGIRAY 877

Query: 476 EDA-ENFCRWMQENHPEHAIEDLFIGTAC 503
            DA  +FCR       EH   +   G  C
Sbjct: 878 MDATRDFCR-------EHGYVETLFGRKC 899


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420
           +R+  +A  G  L+ AD + IE RVLA +A      +AF  G D++  T +  F V    
Sbjct: 737 IRTAFVAEPGNVLISADYSQIELRVLAHVANIPQLTQAFADGVDIHAMTASEMFGVPIEG 796

Query: 421 -PAQVTKDQRAI 431
            P++V +  +AI
Sbjct: 797 MPSEVRRRAKAI 808


>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 858

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           + +R   IA +G K++ AD + IE R+LA +A      +AF  G+D++  T  + F V
Sbjct: 606 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV 663


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASE-GKKLVVADLAGIE 385
            R H   +Q +T      +++P+ LQ I         +R   IA E G  L+ AD + IE
Sbjct: 650 GRIHTSFNQSVTATGRLSSTEPN-LQNIPVRLEQGRHIRKAFIAPEPGWTLLAADYSQIE 708

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            R+LA ++ +     AF   +D++  T +  F+V    VT++ R   K +   + Y
Sbjct: 709 LRILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMGNVTREMRRRAKAVNFGIVY 764


>gi|294673890|ref|YP_003574506.1| exonuclease [Prevotella ruminicola 23]
 gi|294473761|gb|ADE83150.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 51  PVMPQVLKEALENTD-VTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGLP 106
           P+ P+V K+     + + +VAHN  F+ + LKA   C+ +D P +++ CT V +R     
Sbjct: 66  PIFPEVWKQIEPMIEGLPLVAHNKAFDESCLKAVFRCYQMDYPDYQFYCTCVASRKAFPN 125

Query: 107 SALKAVGEALKLSSQKMEEGKELIA 131
           +A   +    KL   ++E     +A
Sbjct: 126 AANHQLHTISKLCGYELENHHHALA 150


>gi|329964271|ref|ZP_08301372.1| exonuclease [Bacteroides fluxus YIT 12057]
 gi|328525576|gb|EGF52619.1| exonuclease [Bacteroides fluxus YIT 12057]
          Length = 168

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95
           H + L D    PV P V +E     + + +VAHN  F+ + LKA F   ++D P + + C
Sbjct: 55  HGLTLADTAGAPVFPDVWREIAPRIEGLPLVAHNKAFDESCLKAVFRTYSMDYPDYDFYC 114

Query: 96  TLVLARS--NGLP 106
           TL  +R    GLP
Sbjct: 115 TLQASRRVIKGLP 127


>gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
 gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
          Length = 115

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 1  MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
          M TL ID ET S + L K G  +Y E  +  ++LFA+  D+ PV++ D      +P+ + 
Sbjct: 1  MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60

Query: 59 EALEN 63
           ALE+
Sbjct: 61 LALED 65


>gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
 gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
          Length = 873

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            + H   +Q +T      ++DP+    P++     +       E   LV  D + IE RV
Sbjct: 599 GKIHTIYNQALTQTGRLSSTDPNLQNIPVKTAEGKLIRKAFIPEYDYLVSFDYSQIELRV 658

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A  +  +KAF   +D++  T +  F V   +V    R   K +   + Y  G   F
Sbjct: 659 LAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNFGIIY--GMSDF 716

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             +A   G+ +N                +A NF +   EN+PE
Sbjct: 717 G-LAEQVGVPVN----------------EARNFIKRYFENYPE 742


>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
 gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
          Length = 876

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVVA-DLAGIEA 386
            + H   +Q +T      ++DP+    P+++     +R   + SE    ++A D + IE 
Sbjct: 600 GKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVPSEKDWFILAADYSQIEL 659

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA  A ++  ++AF    D++  T    F+V+  +VT + R   K +   + Y
Sbjct: 660 RVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAVNFGIVY 714


>gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 558

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN  R  R   E     T     +T+    LQI    +R  V+A  G  LVVAD A +E 
Sbjct: 280 QNWVRDGRFRPEFHAHGTVTGRWVTNGGGALQI-PKVIRRAVVADPGHCLVVADAAQLEP 338

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           RVLA ++ +   ++     +DLY +   R+F+   AQ
Sbjct: 339 RVLAAISRDPGLMEVAARADDLYQSVSERAFSGDRAQ 375


>gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 889

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 33/211 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF + GL +   T+T   T   VL+  K+ +P    +   R + S+     +  
Sbjct: 544 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 602

Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           L++ ++  DGR+    LQ L A  TGR S      QN+P  +   +++ +        + 
Sbjct: 603 LLDVIDKRDGRIHTRYLQTLTA--TGRLSSVDPNLQNIPARTEEGKQIRKAF------VP 654

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           S PD        + SC            D + IE RVLA ++ +    +AF+TG D++  
Sbjct: 655 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 696

Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441
           T  + F+++   +VT  QR   K +   + Y
Sbjct: 697 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 727


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 11/143 (7%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G KLV AD + IE R+LA +A      +AF  G D++  T +  F V    
Sbjct: 777 IRRAFVAVPGTKLVSADYSQIELRLLAEIAEIPALRQAFRDGIDIHAMTASEMFGVPVEG 836

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +  + R   K +   + Y  G  AF  +A+  G+  +     +K       +E       
Sbjct: 837 MPSEVRRRAKAINFGIIY--GISAF-GLANQLGIPRDEAGQYIK-----RYFERFPGIRA 888

Query: 484 WMQENHP---EHAIEDLFIGTAC 503
           +M E      EH   +   G  C
Sbjct: 889 YMDETRAYCREHGYVETLFGRRC 911


>gi|196004142|ref|XP_002111938.1| hypothetical protein TRIADDRAFT_55451 [Trichoplax adhaerens]
 gi|190585837|gb|EDV25905.1| hypothetical protein TRIADDRAFT_55451 [Trichoplax adhaerens]
          Length = 1053

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 28/111 (25%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-YGLVSSSRCLEKLKTWLFL 245
           YL+   N RG          L  IVD  +  L Q LESLT YGL+SS             
Sbjct: 430 YLESDRNRRG----------LKDIVDEAKNSLRQHLESLTSYGLLSSE------------ 467

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
                 +D+T+++     S +  + P  IQ F NR + S+SA LK N L +
Sbjct: 468 ----DKDDVTDSSTLEASSVDLNINPTIIQCFQNRQQ-SQSAYLKKNHLYD 513


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 10/125 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAG 383
           PR  R H   +Q IT      +S+P+    P++  +   +R   I ++ + L++ AD + 
Sbjct: 659 PRTGRVHTSFNQHITATGRLSSSNPNLQNIPIRTPLGREIRKAFIPTDPRNLLLSADYSQ 718

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+ A ++G+   ++AF   ED++  T    F+     +T D R   K  E+  G   
Sbjct: 719 IELRIAAEISGDGKLIEAFRNREDIHSATARVIFDT--PDITPDMRR--KAKEVNFGVLY 774

Query: 444 GAKAF 448
           G + F
Sbjct: 775 GIQPF 779


>gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
 gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
          Length = 875

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386
           S+ H    Q +T      ++DP+    P+++     +R   + S E   L  AD + IE 
Sbjct: 599 SKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEDWILFSADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA M+ +Q  ++AF  G D++  T    F+V+  +V  + R   K +   + Y
Sbjct: 659 RVLAHMSEDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVY 713


>gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
 gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
          Length = 885

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + S EG  ++ +D + IE RVLA + G+    +AF+  ED++ +T  R F +  A
Sbjct: 644 IRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDA 703

Query: 423 -QVTKDQRAIGKVMELALGY 441
            +VT + R   K +   + Y
Sbjct: 704 SEVTPNIRRQAKAVNFGIVY 723


>gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 1015

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVI-ASEGKKLVVADLAGIEA 386
           R H   +Q I       ++DP+ LQ I +       +R+  I   E + L+  D + +E 
Sbjct: 739 RIHTTFEQTIAATGRLSSADPN-LQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 797

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R++A  + ++  ++AF +G D +    +  + +   QV+ DQR+  K M   L Y
Sbjct: 798 RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYGLAY 852


>gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 883

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 38/254 (14%)

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           ++ ++E+T   +  E    G        ++L   LF +  L +   T+T     +   +K
Sbjct: 518 RLAEIEQTIFQEAGEEFNIG------SPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEK 571

Query: 269 LTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           L P A  V N  N  + S+     ++ L++ ++ +     T      ++TGR S      
Sbjct: 572 LAPDAPIVQNVLNYRQISKLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGRLSSVDPNL 631

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385
           QN+P   RS E                          +R   + S E  ++  +D + IE
Sbjct: 632 QNIP--VRSEE-----------------------GRLIRQAFVPSHEDWQIWSSDYSQIE 666

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGG 444
            RVLA + G++   +AF  GED++ TT  R F +A    VT + R   K +   + Y  G
Sbjct: 667 LRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVY--G 724

Query: 445 AKAFQKMASTTGLN 458
              +  +A+ TG++
Sbjct: 725 ISDY-GLANNTGIS 737


>gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J]
 gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J]
          Length = 881

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423
           ++   +SE   L+ +D + IE RVLA ++G+Q  + AF    D++ +T  R F +   + 
Sbjct: 642 KAFTASSEDALLLSSDYSQIELRVLAHISGDQHLITAFNEDADIHTSTAMRVFAIDKEED 701

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 702 VTANDRRNAKAVNFGIVY 719


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 33/211 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF + GL +   T+T   T   VL+  K+ +P    +   R + S+     +  
Sbjct: 542 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 600

Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           L++ ++  DGR+    LQ L A  TGR S      QN+P  +   +++ +        + 
Sbjct: 601 LLDVIDERDGRIHTRYLQTLTA--TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VP 652

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           S PD        + SC            D + IE RVLA ++ +    +AF+TG D++  
Sbjct: 653 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 694

Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441
           T  + F+++   +VT  QR   K +   + Y
Sbjct: 695 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 725


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + SE G  ++ AD + IE RVLA ++G++   +AF TG D++  T    F V+  
Sbjct: 663 IRKAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSED 722

Query: 423 QVTKDQRAIGKVMELALGY 441
           +V    R   K +   + Y
Sbjct: 723 RVDARMRRQAKAVNFGIIY 741


>gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4]
 gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4]
          Length = 885

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + S EG  ++ +D + IE RVLA + G+    +AF+  ED++ +T  R F +  A
Sbjct: 644 IRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDA 703

Query: 423 -QVTKDQRAIGKVMELALGY 441
            +VT + R   K +   + Y
Sbjct: 704 SEVTPNIRRQAKAVNFGIVY 723


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPA 422
           +R   +A +GKKL+VAD + +E R+LA +   +  ++AF  G D +  T    + NVA A
Sbjct: 584 IRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYDNVAKA 643


>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 886

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 33/211 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF + GL +   T+T   T   VL+  K+ +P    +   R + S+     +  
Sbjct: 541 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 599

Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           L++ ++  DGR+    LQ L A  TGR S      QN+P  +   +++ +        + 
Sbjct: 600 LLDVIDERDGRIHTRYLQTLTA--TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VP 651

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           S PD        + SC            D + IE RVLA ++ +    +AF+TG D++  
Sbjct: 652 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 693

Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441
           T  + F+++   +VT  QR   K +   + Y
Sbjct: 694 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 724


>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
 gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
          Length = 871

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 9/140 (6%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISD--CVRSCVIASEGKKLV 377
           FP    P   R H    Q +T      + +P+    P+++       ++ V   E   L+
Sbjct: 579 FPGYIHPETGRVHTVFKQAVTATGRLSSVEPNLQNIPIRMEEGRRIRKAFVPGDENHILL 638

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             D + I+ R LA M+G++  ++ F  G D++  T +  F V   QVT D R   K +  
Sbjct: 639 SCDYSQIDLRSLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNF 698

Query: 438 ALGYQGGAKAFQKMASTTGL 457
            + Y  G   F  +A  TG+
Sbjct: 699 GIVY--GISDF-GLARGTGV 715


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA+ G  L+ AD + IE R+ A MA      +AF  G+D++  T    F     +
Sbjct: 697 IRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDDIHAATAIELFG----E 752

Query: 424 VTKDQRAIGKVMELALGY 441
           V +D R   K +  ++ Y
Sbjct: 753 VNRDTRGKAKTVNFSILY 770


>gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C]
 gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C]
          Length = 1023

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 23/175 (13%)

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           P+A  V    +  S+   LK N   +    A N DG + G+    G   T          
Sbjct: 636 PEAKHVAELLLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYNSTGTEST---------- 685

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
               R S ++  + Q+     +S   DP          R      EG  ++  D + +E 
Sbjct: 686 ----RLSANNPNMQQL-----SSKVGDPRRFDYKYPIKRLFRTRFEGGGMLQLDYSALEM 736

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           R+L  +A ++   +AF  GED++  T +  + +    V KD R   K +   + Y
Sbjct: 737 RILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRAKSVNFGIAY 791


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 887

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 33/211 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF + GL +   T+T   T   VL+  K+ +P    +   R + S+     +  
Sbjct: 542 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 600

Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           L++ ++  DGR+    LQ L A  TGR S      QN+P  +R+ EE  QI       + 
Sbjct: 601 LLDVIDERDGRIHTRYLQTLTA--TGRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VP 652

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           S PD        + SC            D + IE RVLA ++ +    +AF+TG D++  
Sbjct: 653 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 694

Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441
           T  + F+++   +VT  QR   K +   + Y
Sbjct: 695 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 725


>gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 33/211 (15%)

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF + GL +   T+T   T   VL+  K+ +P    +   R + S+     +  
Sbjct: 541 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 599

Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           L++ ++  DGR+    LQ L A  TGR S      QN+P  +   +++ +        + 
Sbjct: 600 LLDVIDERDGRIHTRYLQTLTA--TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VP 651

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           S PD        + SC            D + IE RVLA ++ +    +AF+TG D++  
Sbjct: 652 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 693

Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441
           T  + F+++   +VT  QR   K +   + Y
Sbjct: 694 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 724


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   I SE G  ++ AD + IE R+LA ++ ++  + AF+ G D++  T    F V+  
Sbjct: 642 IREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDVFGVSEE 701

Query: 423 QVTKDQRAIGKVMELALGY 441
           +VT   R   K +   + Y
Sbjct: 702 EVTSLMRRQAKAVNFGIVY 720


>gi|329956618|ref|ZP_08297191.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
 gi|328523990|gb|EGF51066.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
          Length = 163

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95
           H + L D    PV P V +E     + +T+VAHN  F+ + LKA F    +D P + + C
Sbjct: 55  HGLTLADTACAPVFPTVWQEIAPRIEGLTLVAHNKAFDESCLKAVFRTYGMDYPDYDFRC 114

Query: 96  TLVLARS--NGLP 106
           TL  +R    GLP
Sbjct: 115 TLQASRRAIKGLP 127


>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
 gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
          Length = 937

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +R   +A  GK LV  D + IE R+LA +A      +AF  G D++  T +  FNV
Sbjct: 697 IREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMFNV 752


>gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
 gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
          Length = 885

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 35/229 (15%)

Query: 221 ELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           E+E   YGL      +   ++L   LF +  L     T+T     +   + L  Q ++V 
Sbjct: 522 EIEKNIYGLAGEEFNINSPKQLSEILFEKMMLDPVKKTKTGYSTDVEVLEVLAAQGVEV- 580

Query: 278 NNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             ++   R     L T VE +    +S+ R+  T    G + TGR S      QN+P  +
Sbjct: 581 AEKILEYRGYTKLLTTYVEPLPKLADSENRIHTTFHQNGTA-TGRLSSSNPNIQNIPVKT 639

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                 D+ I                    +R   ++ EG   +  D + IE RVLA ++
Sbjct: 640 ------DEGIK-------------------IRRGFVSEEGWSFISFDYSQIELRVLAELS 674

Query: 394 GEQWKLKAFETGEDLY-VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            ++  + A++  +DL+ +T     F      V++++R+I KV+  ++ Y
Sbjct: 675 EDETLILAYQKDKDLHDLTARKLFFKTDEEPVSREERSIAKVINFSILY 723


>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
 gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
          Length = 937

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +R   +A  GK LV  D + IE R+LA +A      +AF  G D++  T +  FNV
Sbjct: 697 IREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMFNV 752


>gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus]
          Length = 822

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422
           R+  ++SEG   + AD + IE R+LA ++G+   LK F+  E  D++ T  ++  ++   
Sbjct: 609 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 668

Query: 423 QVTKDQRAIGKVMELALGYQGG 444
           +VT   R   K +  ++ Y  G
Sbjct: 669 RVTHMDREQTKKVVYSVVYGAG 690


>gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
 gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
          Length = 937

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +R   +A  GK LV  D + IE R+LA +A      +AF  G D++  T +  FNV
Sbjct: 697 IREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMFNV 752


>gi|271967935|ref|YP_003342131.1| DNA polymerase I - 3'-5' exonuclease-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511110|gb|ACZ89388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains-like
           protein [Streptosporangium roseum DSM 43021]
          Length = 531

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 29/163 (17%)

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-DLY 409
           TS    LQI    +R  V+A EG  LVVAD A +E RVLA MAG+    +A   G+ DLY
Sbjct: 292 TSGGGALQI-PKVMRQVVVADEGWTLVVADAAQLEPRVLAAMAGDGGLARA--AGQIDLY 348

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
                       AQ    +R   K+  L+  Y G          T+G      A  V   
Sbjct: 349 QAL---------AQAFGGERDSAKIAMLSAMYGG----------TSGDAPKLLA--VMRQ 387

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             P  ++  E+  R  +E      +   ++G  C +    WR+
Sbjct: 388 RFPRAYQFVEDAARSGEEGK----LVRSWLGRTCPQPSAGWRE 426


>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
 gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
          Length = 937

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +R   +A  GK LV  D + IE R+LA +A      +AF  G D++  T +  FNV
Sbjct: 697 IREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMFNV 752


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKK-LVVADLAG 383
           P   + H   +Q IT      +S+P+    P++  +   +R   IAS  +  L+ AD + 
Sbjct: 669 PATGKLHTSFNQHITATGRLSSSNPNLQNIPIRTELGKEIRKAFIASTNRNFLLSADYSQ 728

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE R+ A ++G++  ++AF   ED++  T    F+     VT D R   K +   + Y
Sbjct: 729 IELRIAAELSGDKKLIEAFRNQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLY 784


>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
 gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
          Length = 924

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +R   IA+ G  L+ AD + IE R++A +AG     +AF  G+D++  T ++ F V
Sbjct: 678 IREAFIAAPGHLLISADYSQIELRLVAHVAGITALRQAFAEGKDIHAITASQVFGV 733


>gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
 gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
          Length = 885

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 363 CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420
            +R   + S  G ++  +D + +E RVLA + G++   + F+ GED++ +T  R F++ A
Sbjct: 643 LIRKAFVPSHAGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPA 702

Query: 421 PAQVTKDQRAIGKVMELALGY 441
            A++ ++ R   K +   + Y
Sbjct: 703 DAEIDRNMRRRAKAVNFGIVY 723


>gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ)
            [Danio rerio]
          Length = 2239

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 354  PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
            PD     S  +R   +   G  ++  D + +E R+LA ++ ++  L    +G D++ +  
Sbjct: 1961 PDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIA 2020

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            A    V PA V  + R   K +   + Y  GAK+   +    G+  N  A  ++T  +  
Sbjct: 2021 AEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKS---LGEQMGIEENDAACYIETFKS-- 2075

Query: 474  EWEDAENFCR 483
             +   +NF R
Sbjct: 2076 RYNGIQNFLR 2085


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
          Length = 879

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423
           ++ + +SE   L+ +D + IE RVLA ++G++  + AF+   D++ +T  R F +   + 
Sbjct: 640 KAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMRVFGIEKEED 699

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 700 VTPNDRRNAKAVNFGIVY 717


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA  G  LV  D + IE R+LA +A      +AF  G D++  T +  F+V   +
Sbjct: 693 IRGAFIAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDE 752

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 753 MTPEIRRQAKAINFGVIY 770


>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
 gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
          Length = 882

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 6/123 (4%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEAR 387
           R H   +Q +T      +++P+   I     +   VR   + + E   ++ AD + IE R
Sbjct: 607 RIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREVRKVFVPNYENSIILSADYSQIELR 666

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A ++  + AF+   D++  T +  F V   +VT + R   K +   + Y  G  +
Sbjct: 667 VLAHIADDENLINAFKHHADIHTKTASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIGDFS 726

Query: 448 FQK 450
             K
Sbjct: 727 LAK 729


>gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 570

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G KLVVAD A +E R+L  +A +Q ++ A   G+DLY         V+   
Sbjct: 322 LRGAVVADPGWKLVVADAAQLEPRILTGLAQDQ-RMAAAGRGQDLYTGI------VSAGA 374

Query: 424 VTKDQRAIGKVMELALGY 441
           VT  +RA  KV  L   Y
Sbjct: 375 VT--ERAQAKVAMLGAMY 390


>gi|315609065|ref|ZP_07884035.1| exonuclease [Prevotella buccae ATCC 33574]
 gi|315249269|gb|EFU29288.1| exonuclease [Prevotella buccae ATCC 33574]
          Length = 163

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 51  PVMPQVLKEALENT-DVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
           PV P V +   E   D+ +VAHNS F+ + LKA   C+ +D P +R+  TL  AR
Sbjct: 66  PVFPHVWERITELIGDLPLVAHNSPFDESCLKAVFRCYQMDYPDYRFYDTLRTAR 120


>gi|224537614|ref|ZP_03678153.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520756|gb|EEF89861.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 164

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95
           H + L D    P+ P V +E     + + ++AHN  F+ + LKA F   +LD P + + C
Sbjct: 55  HGLTLADTAKAPIFPTVWQEIAPLIEGLPLIAHNKGFDESCLKAVFRTYSLDYPDYEFHC 114

Query: 96  TLVLARS--NGLPS 107
           TL  AR    GLP+
Sbjct: 115 TLSTARRRIKGLPN 128


>gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum]
 gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum]
          Length = 1588

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 13/140 (9%)

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPT--SITSDPDPLQIISDCVRSCVIASEGK 374
            GR  GC            +H    +I  H P   ++  D D   +   C R   + S+G 
Sbjct: 1308 GRIFGCYV----------THTATGRITMHEPNLQNVAKDFDIDGVEVSC-RKAFVPSQGH 1356

Query: 375  KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             +V AD   +E RVLA ++ ++          D++    A+  N++  +VT++ R   K 
Sbjct: 1357 VMVSADFCQLELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQRAKQ 1416

Query: 435  MELALGYQGGAKAFQKMAST 454
            +   + Y  G+KA  +  +T
Sbjct: 1417 IIYGIIYGMGSKALAEQLNT 1436


>gi|288926311|ref|ZP_06420235.1| exonuclease [Prevotella buccae D17]
 gi|288336916|gb|EFC75278.1| exonuclease [Prevotella buccae D17]
          Length = 163

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 51  PVMPQVLKEALENT-DVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
           PV P V +   E   D+ +VAHNS F+ + LKA   C+ +D P +R+  TL  AR
Sbjct: 66  PVFPHVWERITELIGDLPLVAHNSPFDESCLKAVFRCYQMDYPDYRFYDTLRTAR 120


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   IA+ G  L+VAD   +E R+LA +A  +  L+AF+ G D +  T   + N+ P
Sbjct: 693 IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRT---AMNMYP 747


>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
 gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
          Length = 928

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  GKKLV AD + IE R++A +A       AF  G D++  T ++ F V    
Sbjct: 689 IRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRDAFAHGADIHAITASQVFGVPLDG 748

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           +    R   K +   + Y  G  AF  +A+  G+
Sbjct: 749 IDPALRRRAKAINFGIIY--GISAF-GLAAQLGI 779


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   IA+ G  L+VAD   +E R+LA +A  +  L AF+ G D +  T   + N+ P
Sbjct: 849 IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRT---AMNMYP 903


>gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 886

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + SE G  ++ AD + IE RVLA ++G+    +AF    D++  T    F V P 
Sbjct: 646 IRKVFVPSEEGWFILSADYSQIELRVLAHISGDPGLQEAFLHDMDIHTKTAMDVFGVGPD 705

Query: 423 QVTKDQRAIGKVMELALGY 441
           QV  + R   K +   + Y
Sbjct: 706 QVDANMRRSAKAVNFGIVY 724


>gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
 gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
          Length = 882

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 27/208 (12%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTL 294
           ++L   LF E  L +   T+T     +   +KL P+A  V N     + S+     +  L
Sbjct: 537 KQLGHILFEEMKLPVIKKTKTGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVVGL 596

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A++S  +   T      ++TGR S      QN+P       ++ Q             
Sbjct: 597 LDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQ------------- 643

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                      + V + EG ++  +D + IE RVLA +  ++    AF+ G+D++  T  
Sbjct: 644 -----------AFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 692

Query: 415 RSFNVAPA-QVTKDQRAIGKVMELALGY 441
           R F++  A +VT + R   K +   + Y
Sbjct: 693 RIFHLNSAEEVTPNIRRQAKAVNFGIVY 720


>gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 354

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            + +R   IA +G K++ AD + IE R+LA +A      +AF  G+D++  T  + F V
Sbjct: 101 GNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV 159


>gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio]
          Length = 2593

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 354  PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
            PD     S  +R   +   G  ++  D + +E R+LA ++ ++  L    +G D++ +  
Sbjct: 2315 PDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIA 2374

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            A    V PA V  + R   K +   + Y  GAK+   +    G+  N  A  ++T  +  
Sbjct: 2375 AEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKS---LGEQMGIEENDAACYIETFKS-- 2429

Query: 474  EWEDAENFCR 483
             +   +NF R
Sbjct: 2430 RYNGIQNFLR 2439


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           +R   +A++G  L+VAD   +E R+LA +A  +  L AF+ G D +  T
Sbjct: 883 IRQAFVAAQGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 931


>gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis]
          Length = 2242

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 341  QIITHLPTSITSDPDPLQIISDC---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            ++  H P   T   D    IS C   VR   + + G  ++ AD   +E R+LA  + +  
Sbjct: 2029 RVSMHEPNLQTIPRDFKSDISGCILSVRMAFVPASGNIMLSADFCQLELRILAHFSQDPV 2088

Query: 398  KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              K      D++ +  AR       QV  D R   K +  A+ Y  GAK+  +  S T
Sbjct: 2089 LCKLLHGKGDIFKSIAARLNKTTEEQVDDDMRQRAKQLCYAMIYGMGAKSLAETLSAT 2146


>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
 gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           +R   IA+ G  L+VAD   +E RVLA +A  +  L AF+ G D +  T
Sbjct: 565 IRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFKAGGDFHSRT 613


>gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
 gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
          Length = 878

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434
           L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +  P  VT + R   K 
Sbjct: 650 LLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKA 709

Query: 435 MELALGY 441
           +   + Y
Sbjct: 710 VNFGIVY 716


>gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905]
 gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905]
          Length = 875

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGI 384
           + S+ H    Q +T      ++DP+    P+++     +R   + S E   L  AD + I
Sbjct: 597 KDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSNENWILFSADYSQI 656

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA M+ ++  ++AF  G D++  T    F+V+  +V  + R   K +   + Y
Sbjct: 657 ELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVY 713


>gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
 gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
          Length = 608

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R C  A  G  L+  D + +E RV A ++ +        +G D++  T    F      
Sbjct: 380 LRHCFQADPGHVLISCDFSQVEVRVTAALSRDPALTDVLASGVDIHDATARLLFGDG--- 436

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            TKDQR + K       Y GGA+A       T
Sbjct: 437 FTKDQRTLAKRATFGTIYGGGARALMNATGAT 468


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  LV  D + IE R+LA +A      +AF  G D++  T +  F+V   +
Sbjct: 693 IREAFVAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDE 752

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 753 MTPEIRRKAKAINFGVIY 770


>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
 gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
          Length = 933

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  L+  D + IE R+LA +A      +AF  G D++  T +  F+V   Q
Sbjct: 693 IREAFVAEPGNVLLSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDQ 752

Query: 424 VTKDQRAIGKVMELALGY 441
           +T + R   K +   + Y
Sbjct: 753 MTPEVRRRAKAINFGVIY 770


>gi|294675436|ref|YP_003576052.1| exonuclease [Prevotella ruminicola 23]
 gi|294473646|gb|ADE83035.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 51  PVMPQVLKEALENTD-VTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
           PV P+V K+     D + +VAHN  F+ + LKA   C+ +D P + + CT V +R
Sbjct: 66  PVFPEVWKQIEPLIDGLPLVAHNKSFDESCLKAVFRCYQMDYPDYPFYCTCVASR 120


>gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
 gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
          Length = 878

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423
           ++ V  +E + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +   + 
Sbjct: 639 KAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTED 698

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 699 VTPNDRRNAKAVNFGIVY 716


>gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 239

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 35/129 (27%)

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L  N+K+   A+ V        R  +LK    ++A+  DGR+ G +   GA  TGR    
Sbjct: 134 LKQNEKIAEAAL-VLEYLTLQKRYGMLK--NWLDAVQDDGRIHGRVNTCGAV-TGR---- 185

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADL 381
                               +TH      S P+  QI SD + R C +  EG KLV  D 
Sbjct: 186 --------------------MTH------SSPNMAQIPSDSLYRQCFVVPEGSKLVGIDA 219

Query: 382 AGIEARVLA 390
           +G+E R+LA
Sbjct: 220 SGLELRMLA 228


>gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum]
          Length = 1076

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 30/178 (16%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L+ A  S+GR+  +  F   + TGR        QN+ +        D +I  L    
Sbjct: 788 LQNLLRACRSNGRIHAS--FTTFTGTGRVQSVHPNVQNVQK--------DALIDSL---- 833

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        VRS  +A  G  LV AD + +E RVLA ++ ++   K F  G D + 
Sbjct: 834 ------------SVRSLFVAPPGFVLVSADYSQLELRVLAGLSKDEGLCKLFRNGGDFFQ 881

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           T   R        V  D++ + K +  A+ Y  GA    +   TT  N     HL+++
Sbjct: 882 TVTDRWNANTSIDVPLDRQKV-KQLCYAIIYGMGAITLGERIGTTKQNAQ---HLIES 935


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 599 PDTGKVHTMFNQTLTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQ 658

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF+   D++  T    F+V+  +VT + R   K +   + Y
Sbjct: 659 IELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVY 716


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 597 PDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQ 656

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF+   D++  T    F+V+  +VT + R   K +   + Y
Sbjct: 657 IELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVY 714


>gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 882

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 27/208 (12%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTL 294
           ++L   LF E  L +   T+T     +   +KL P+A  V N     + S+     +  L
Sbjct: 537 KQLGHILFEEMKLPVIKKTKTGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGL 596

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A++S  +   T      ++TGR S      QN+P       ++ Q             
Sbjct: 597 LDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQ------------- 643

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                      + V + EG ++  +D + IE RVLA +  ++    AF+ G+D++  T  
Sbjct: 644 -----------AFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 692

Query: 415 RSFNVAPA-QVTKDQRAIGKVMELALGY 441
           R F++  A +VT + R   K +   + Y
Sbjct: 693 RIFHLNSAEEVTPNIRRQAKAVNFGIVY 720


>gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1034

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   IA+ G  L+VAD   +E R+LA +A  +  L AF+ G D +  T   + N+ P
Sbjct: 765 IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRT---AMNMYP 819


>gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 878

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423
           ++ V  +E + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +   + 
Sbjct: 639 KAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTED 698

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 699 VTPNDRRNAKAVNFGIVY 716


>gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
          Length = 875

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGI 384
           + S+ H    Q +T      ++DP+    P+++     +R   + S E   L  AD + I
Sbjct: 597 KDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEDWILFSADYSQI 656

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           E RVLA M+ ++  ++AF  G D++  T    F+V+  +V  + R   K +   + Y
Sbjct: 657 ELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKAVNFGIVY 713


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 599 PDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQ 658

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF+   D++  T    F+V+  +VT + R   K +   + Y
Sbjct: 659 IELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVY 716


>gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 878

 Score = 38.9 bits (89), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423
           ++ V  +E + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +   + 
Sbjct: 639 KAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTED 698

Query: 424 VTKDQRAIGKVMELALGY 441
           VT + R   K +   + Y
Sbjct: 699 VTPNDRRNAKAVNFGIVY 716


>gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + SE   L+  AD + IE RVLA +A +   ++AF  G D++  T    F+V+  
Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEE 695

Query: 423 QVTKDQRAIGKVMELALGY 441
            VT + R   K +   + Y
Sbjct: 696 DVTANMRRQAKAVNFGIVY 714


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVV-ADLAG 383
           P+  + H    Q +T      +S+P+    P+++ +   +R   +  +    +  AD + 
Sbjct: 607 PQTGKLHTTFHQAVTATGRLSSSEPNLQNVPIRLDAGRKIRKFFVPCKPDNFIFSADYSQ 666

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ- 442
           IE R+LA +A +   + AF   +D++  T +  F VA  +VT + R   K +   + Y  
Sbjct: 667 IELRILAHIAQDNNLMDAFAKKQDIHTRTASEVFGVAMDEVTPEMRGRAKAVNFGIVYGI 726

Query: 443 ---GGAKAFQKMASTTGLNLNTF 462
              G AK  +      G  +N +
Sbjct: 727 SDFGLAKDIKVTRKEAGRYINNY 749


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 13/119 (10%)

Query: 336 HEELDQIITHLPTSIT-----SDPDP-LQII------SDCVRSCVIAS-EGKKLVVADLA 382
           HE+ ++I T    ++T     S  DP LQ I         +R   I S E   +  AD +
Sbjct: 597 HEDSNKIHTRFNQALTQTGRLSSIDPNLQNIPVRLEEGRKIREAFIPSHEDWVIFAADYS 656

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE RVLA +A ++  ++AF+   D++  T    F+V+  +VT + R   K +   + Y
Sbjct: 657 QIELRVLAHIANDEKLIEAFKEDADIHTKTAMDVFHVSEDEVTSNMRRQAKAVNFGIVY 715


>gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
 gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
          Length = 862

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +  EG  LV +D   +E R+LA MA     +KAF+   D++  T    F+ +  +
Sbjct: 623 IRKAFLPEEGCVLVSSDYHQVELRILAHMAKVPNLIKAFQNEMDIHSQTAMDLFDCSLEE 682

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           VT  QR   K +   + Y  G   F  +AS  G++
Sbjct: 683 VTPLQRRQAKTVNFGIVY--GISDF-GLASQLGVS 714


>gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 888

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 27/149 (18%)

Query: 294 LVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           +++ ++ DG++    +Q L  + TGR S      QN+P  +    ++ Q        + S
Sbjct: 604 ILDYIHQDGKVHSRFIQTL--TTTGRLSSADPNLQNIPIRTEEGRKIRQAF------VPS 655

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            PD            VI S       +D + IE RVLA ++G+    +AF+  +D++  T
Sbjct: 656 HPD-----------WVIFS-------SDYSQIELRVLAHVSGDPHLQEAFKENKDIHTAT 697

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441
            A+ F+     ++KD+R   K +   + Y
Sbjct: 698 AAKVFHKDEKDISKDERRQAKAVNFGIVY 726


>gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 562

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
           I   +R+CV A  G KLVVAD A +E RVL  ++G++ +L       DLY 
Sbjct: 309 IPKVLRTCVRADSGWKLVVADAAQLEPRVLTALSGDR-RLADVAAATDLYA 358


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + SE   L+  AD + IE RVLA +A +   ++AF  G D++  T    F+V+  
Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEE 695

Query: 423 QVTKDQRAIGKVMELALGY 441
            VT + R   K +   + Y
Sbjct: 696 DVTANMRRQAKAVNFGIVY 714


>gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII---SD---CVRSCVIASEGK-KLVVADLAG 383
           + S+ H    Q +T      + DP+ LQ I   SD    +R+  + S+   ++  AD + 
Sbjct: 614 KDSKIHTRFLQTLTQTGRLSSVDPN-LQNIPMRSDEGRQIRTAFVPSQPDWQIFGADYSQ 672

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441
           IE RVLA M G++   +AF  GED++  T    F + + A V   QR   K +   + Y
Sbjct: 673 IELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIVY 731


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           +D +I++    + + P  L+     +R   +A+ G  L+VAD   +E R+LA +A  +  
Sbjct: 707 IDSLISNFILPLQNQP-ALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSM 765

Query: 399 LKAFETGEDLYVTT 412
           L AF+ G D +  T
Sbjct: 766 LDAFKAGGDFHSRT 779


>gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 887

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 27/208 (12%)

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTL 294
           ++L   LF E  L +   T+T     +   +KL P+A  V N     + S+     +  L
Sbjct: 542 KQLGHILFEEMKLPVIKKTKTGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGL 601

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A++S  +   T      ++TGR S      QN+P       ++ Q             
Sbjct: 602 LDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQ------------- 648

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                      + V + EG ++  +D + IE RVLA +  ++    AF+ G+D++  T  
Sbjct: 649 -----------AFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 697

Query: 415 RSFNVAPA-QVTKDQRAIGKVMELALGY 441
           R F++  A +VT + R   K +   + Y
Sbjct: 698 RIFHLNSAEEVTPNIRRQAKAVNFGIVY 725


>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +R   IA+ G  L+VAD   +E R+LA +A  +  L AF+ G D +  T   + N+ P
Sbjct: 565 IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT---AMNMYP 619


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +R   +A  GK+L+ AD + IE R++A +A  +    AF  G D++  T ++ F V
Sbjct: 687 IRHAFVAEPGKRLISADYSQIELRLVAHVAEIEGLRDAFADGADIHAITASQVFGV 742


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 25/128 (19%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++L   +N D +   T   L A+ TGR S      QN+P  + +  +             
Sbjct: 638 DSLFAHINRDTKRVHTSFSLAATTTGRLSSTEPNLQNIPIRTEAGRQ------------- 684

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   IA  G  LV AD + +E R+LA +A  +   +AF  G D++  
Sbjct: 685 ------------IREVFIAEPGHVLVAADYSQVELRLLAHIANVESLKQAFRDGTDIHAM 732

Query: 412 TYARSFNV 419
           T +  F V
Sbjct: 733 TASEVFGV 740


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAGIEAR 387
           + H   +Q +T      ++DP+    P+++     +R   + SE   L+  AD + IE R
Sbjct: 605 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELR 664

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K +   + Y
Sbjct: 665 VLAHISKDENLIEAFTNDMDVHTKTAMDVFHVAQDEVTPAMRRQAKAVNFGIVY 718


>gi|239980380|ref|ZP_04702904.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291452241|ref|ZP_06591631.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291355190|gb|EFE82092.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 562

 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           I   +R  V+A  G +LVVAD   +E R+LA ++G++  ++     +DLY     R+F 
Sbjct: 312 IPKVIRRAVVADPGWRLVVADADQLEPRILAAVSGDRALMEVASRPDDLYQAVSDRAFQ 370


>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
 gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
          Length = 966

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA +GK L+ AD + IE R+LA +       +AF+ G D++  T +  F+     
Sbjct: 723 IRKAFIAPQGKVLISADYSQIELRLLAHIGDIPQLKRAFQEGLDIHAMTASEMFDTPIEG 782

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    R   K +   + Y  G  AF  +A+  G+        +KT
Sbjct: 783 MDPMIRRRAKAINFGIVY--GISAF-GLANQLGIPQGEAGAYIKT 824


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAGIEAR 387
           + H   +Q +T      ++DP+    P+++     +R   + SE   L+  AD + IE R
Sbjct: 604 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELR 663

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA ++ ++  ++AF    D++  T    F+V+  +VT+  R   K +   + Y
Sbjct: 664 VLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAKAVNFGIVY 717


>gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537]
          Length = 896

 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 94/239 (39%), Gaps = 39/239 (16%)

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           QIVDVE+   ++  E      ++S +   +L   LF + GL +   T+T     +   +K
Sbjct: 529 QIVDVEKAIYEEAGEEFN---INSPK---QLGILLFEKMGLPVIKRTKTGYSTAVEVLEK 582

Query: 269 LTPQA---IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVF 324
           L  QA     +   R  A   +      L      D ++    LQ L  ++TGR S    
Sbjct: 583 LADQAPIVAYILQYRQLAKLKSTYIDGLLAVVYRQDSKIHTRYLQTL--TQTGRLSSVDP 640

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAG 383
             QN+P  + +  +                         +R   + SE   ++  AD + 
Sbjct: 641 NLQNIPMRTEAGRQ-------------------------IRKAFVPSEPNWQIFGADYSQ 675

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441
           IE RVLA M G++   +AF   ED++  T    F +   A +T  QR   K +   + Y
Sbjct: 676 IELRVLAHMTGDKNLQRAFLNDEDIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVY 734


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           +R   +A+ G  L+VAD   +E R+LA +A  +  L AF+ G D +  T
Sbjct: 763 IRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRT 811


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAGIEA 386
            R H   +Q IT      +S+P+    P++  +   +R   I S  + L++ AD + IE 
Sbjct: 672 GRLHTSFNQSITATGRLSSSNPNLQNIPIRTDLGKEIRRAFIPSNPENLLLSADYSQIEL 731

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RV A ++G+   ++AF   ED++  T    F+    +VT D R   K  E+  G   G +
Sbjct: 732 RVAAELSGDPMLIEAFRNHEDIHAATARVIFDT--DEVTSDMRR--KAKEVNFGVLYGIQ 787

Query: 447 AF 448
            F
Sbjct: 788 PF 789


>gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302]
          Length = 882

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 701 EDVTSNMRRQAKAVNFGIVY 720


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
          Length = 879

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAGIEAR 387
           + H   +Q +T      ++DP+    P+++     +R   + SE   L+  AD + IE R
Sbjct: 604 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELR 663

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA ++ ++  ++AF    D++  T    F+V+  +VT+  R   K +   + Y
Sbjct: 664 VLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAKAVNFGIVY 717


>gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
 gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
          Length = 885

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + SE G  ++ AD + IE RVLA ++G++   +AF    D++  T +  F V P 
Sbjct: 645 IRKAFVPSEPGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPE 704

Query: 423 QVTKDQRAIGKVMELALGY 441
            V  + R   K +   + Y
Sbjct: 705 DVDANMRRQAKAVNFGIVY 723


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 30/168 (17%)

Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + L +A+N + GR+  +   L A+ TGR S      QN+P   R+ E             
Sbjct: 634 DALKDAINPNTGRVHTSFS-LAATTTGRLSSSEPNLQNIP--IRTEE------------- 677

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R    A  G  +V AD + IE R+LA +A  +   +AF  G+D++ 
Sbjct: 678 ----------GRKIREAFTAEPGHVIVAADYSQIELRLLAHIADVEALKQAFREGQDIHA 727

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            T +  F V    +    R   K +   + Y  G  AF  +A+  G+ 
Sbjct: 728 LTASEMFGVPLENMDPTTRRNAKAINFGIIY--GISAF-GLANNLGIG 772


>gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 884

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKV 434
           L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +  A+ VT + R   K 
Sbjct: 656 LLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKAEDVTPNDRRNAKA 715

Query: 435 MELALGY 441
           +   + Y
Sbjct: 716 VNFGIVY 722


>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
 gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
          Length = 931

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +R   +A EG  L+  D + IE R+LA +A      +AF  G D++  T ++ FNV
Sbjct: 691 IREAFVAEEGNVLLALDYSQIELRILAHVAKIDALKEAFYNGVDIHALTASQMFNV 746


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  ++ AD + IE R+ A MA      +AF  GED++  T  + F     +
Sbjct: 688 IRHAFVAEPGHVILAADYSQIELRLAAHMADVPALKEAFAAGEDIHAATAEQLFG----E 743

Query: 424 VTKDQRAIGKVMELALGY 441
           V ++ R   K +  A+ Y
Sbjct: 744 VNRETRGRAKTINFAILY 761


>gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 431

 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 190 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 249

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 250 EDVTPNMRRQAKAVNFGIVY 269


>gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
 gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
          Length = 944

 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382
           P   R H   +Q IT      +S+P+ LQ I        +  R+ + +S  K L+ AD +
Sbjct: 663 PLTGRLHTSFNQFITATGRLSSSNPN-LQNIPIRSPLGKEIRRAFIPSSPDKWLLSADYS 721

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            IE R+ A ++G+   ++AF   ED++  T    F     ++T D R   K +   + Y
Sbjct: 722 QIELRIAAEISGDPQLIEAFRNREDIHTATARVIFGS--DEITPDMRRKAKEVNFGVLY 778


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 10/125 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKK-LVVADLAG 383
           P   R H   +Q IT      +S+P+   I     +   +R   I S  +  L+ AD + 
Sbjct: 663 PLTGRLHTTFNQFITATGRLSSSNPNLQNIPIRSPLGKEIRRAFIPSTPENWLLSADYSQ 722

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+ A ++G+   L+AF   ED++  T    F+    ++T D R   K  E+  G   
Sbjct: 723 IELRIAAEISGDPQLLEAFRNREDIHTATAKVIFDT--DEITSDMRR--KAKEVNFGVLY 778

Query: 444 GAKAF 448
           G   F
Sbjct: 779 GIMPF 783


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           +R   +A+ G  L+VAD   +E R+LA +A  +  L AF+ G D +  T
Sbjct: 616 IRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRT 664


>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
 gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
          Length = 879

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEAR 387
           + H   +Q +T      ++DP+    P+++     +R   + S EG  +  AD + IE R
Sbjct: 604 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELR 663

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA ++ ++  ++AF    D++  T    F+V+  +VT   R   K +   + Y
Sbjct: 664 VLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVY 717


>gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
 gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
          Length = 848

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 607 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 666

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 667 EDVTPNMRRQAKAVNFGIVY 686


>gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76]
 gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017]
 gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027]
 gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141]
 gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244]
 gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012]
 gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031]
 gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043]
 gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312]
 gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341]
 gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
 gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
 gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467]
          Length = 882

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720


>gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
 gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
          Length = 879

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEAR 387
           + H   +Q +T      ++DP+    P+++     +R   + S EG  +  AD + IE R
Sbjct: 604 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELR 663

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           VLA ++ ++  ++AF    D++  T    F+V+  +VT   R   K +   + Y
Sbjct: 664 VLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVY 717


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           +R    A  G  LVVAD   +E R+LA MAG +   +AFE G D +  T
Sbjct: 696 IRKAFTAGPGNVLVVADYGQLELRLLAHMAGCKSMQEAFEAGGDFHSRT 744


>gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346]
          Length = 882

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720


>gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342]
          Length = 882

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720


>gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000]
          Length = 882

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720


>gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
 gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
          Length = 579

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 300 PATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 359

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 360 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIPY 417


>gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9]
 gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9]
          Length = 334

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAF-ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           LV  D +  EAR+   +AG++  + AF +   D++  T +  F V   +VTKD R   K 
Sbjct: 37  LVFTDYSAQEARLAGVLAGDEQMINAFLDPSRDVHTETASLVFKVPVEEVTKDLRTRAKA 96

Query: 435 MELALGYQGGAKAF 448
           +   L Y     +F
Sbjct: 97  VTFGLMYGEDPNSF 110


>gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
 gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
          Length = 946

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQ-IISDCVRSCVIASEGKKLVV-ADLAG 383
           P   + H   +Q +T      +S P+    P++ +I   +R   I S  + L++ AD + 
Sbjct: 665 PLTGKLHTSFNQHVTATGRLSSSHPNLQNIPIRTLIGKEIRRAFIPSNPENLLLSADYSQ 724

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RV A ++G++  ++AF   ED++  T    FN    ++T + R   K  E+  G   
Sbjct: 725 IELRVAAEISGDEKLMEAFRNREDIHSATARTIFNT--TEITPEMRR--KAKEVNFGVLY 780

Query: 444 GAKAF 448
           G   F
Sbjct: 781 GIMPF 785


>gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG]
 gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG]
 gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137]
 gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62]
 gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF]
          Length = 882

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720


>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
 gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group]
          Length = 560

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           +R   +A+ G  L+VAD   +E R+LA +A  +  L AF+ G D +  T
Sbjct: 291 IRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRT 339


>gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol]
 gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol]
          Length = 882

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720


>gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2]
 gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2]
          Length = 890

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + SE G  ++ AD + IE RVLA ++G++   +AF    D++  T    F V+  
Sbjct: 650 IRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDVFGVSAD 709

Query: 423 QVTKDQRAIGKVMELALGY 441
           QV  + R   K +   + Y
Sbjct: 710 QVDSNMRRSAKAVNFGIVY 728


>gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322]
 gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322]
          Length = 837

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  E   L+ + D + IE RVLA ++ ++   +AF  G+D++ +T  R F V  A
Sbjct: 596 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 655

Query: 423 Q-VTKDQRAIGKVMELALGY 441
           + VT + R   K +   + Y
Sbjct: 656 EDVTPNMRRQAKAVNFGIVY 675


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A+ G  L+ AD + IE R+LA +A  +  L+AF  G+D++  T +  F +    
Sbjct: 705 IRKAFVATPGCVLLSADYSQIELRLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEG 764

Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448
           +    R   K +   + Y  G  AF
Sbjct: 765 MDPLTRRRAKAINFGIIY--GISAF 787


>gi|118088564|ref|XP_419746.2| PREDICTED: similar to laminin, alpha 2 (merosin, congenital
           muscular dystrophy) [Gallus gallus]
          Length = 3133

 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           C G+T EC YD+N  +  ++  +FGEY  G V V
Sbjct: 348 CHGKTEECYYDQNVADRNQSLNIFGEYIGGGVCV 381


>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 994

 Score = 37.7 bits (86), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           I   +R   +A  G  L+ AD + IE R+ A +A      +AF  GED++  T    F  
Sbjct: 750 IGRQIRDAFVAEPGHVLLSADYSQIELRLAAHIADVPALREAFAHGEDIHARTAMELFG- 808

Query: 420 APAQVTKDQRAIGKVMELALGY 441
              +V +D R   K +  A+ Y
Sbjct: 809 ---EVNRDTRGRAKTINFAILY 827


>gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437]
          Length = 881

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVV-ADLAGIEA 386
            + H   +Q I       ++DP+    P+++     +R   + SE + L++ AD + IE 
Sbjct: 605 GKIHTRFNQAIAATGRLSSTDPNLQNIPIRLEEGRRIRQVFVPSEEEWLMLSADYSQIEL 664

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA ++G++  ++AF+   D++  T    F V+  +VT   R   K +   + Y
Sbjct: 665 RVLAHLSGDENLIEAFQKELDVHTKTAMDVFGVSADEVTPWMRRHAKAVNFGIVY 719


>gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
 gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
          Length = 878

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           +SE   ++ AD + IE RVLA +  +    +AF  G+D++  T  + F V   +VT   R
Sbjct: 645 SSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMR 704

Query: 430 AIGKVMELALGY 441
              K +   + Y
Sbjct: 705 RQAKAVNFGIVY 716


>gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 878

 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           +SE   ++ AD + IE RVLA +  +    +AF  G+D++  T  + F V   +VT   R
Sbjct: 645 SSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMR 704

Query: 430 AIGKVMELALGY 441
              K +   + Y
Sbjct: 705 RQAKAVNFGIVY 716


>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
           Position
 gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
 gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
           Position
 gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site
           (- 1 Basepair Position)
 gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
 gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
           Site
 gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
           Site (-1 Basepair Position)
          Length = 580

 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418


>gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
 gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
 gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
          Length = 580

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418


>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna.
 gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 10 Base Pairs Of Duplex Dna
           Following Addition Of A Single Dttp Residue
 gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 11 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp And A Datp Residue.
 gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 15 Base Pairs Of Duplex Dna
           Following Addition Of Dttp, Datp, Dctp, And Dgtp
           Residues.
 gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 12 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp, A Datp, And A Dctp
           Residue.
 gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
 gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
 gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
 gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site
 gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
 gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
 gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
 gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
 gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
 gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Two Rounds Of Primer
           Extension, Following Incorporation Of Dctp And Dgtp.
 gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Three Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, And
           Dttp.
 gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Five Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
           And Datp.
 gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Cytosine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
           Benzo[a]pyrene Adduct That Blocks Replication
 gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As
           Yet Unnamed) Dna Polymerase Fragment
          Length = 580

 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418


>gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
           In Complex With Fragment Dna Polymerase I From Bacillus
           Stearothermophilus
          Length = 580

 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418


>gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 884

 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + S+ G  ++ AD + IE RVLA ++G++   +AF    D++  T    F V+ A
Sbjct: 644 IRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEA 703

Query: 423 QVTKDQRAIGKVMELALGY 441
           +V  + R   K +   + Y
Sbjct: 704 EVDANMRRSAKAVNFGIVY 722


>gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
           Active Site
 gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
           Site
 gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
 gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
 gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
 gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A
           Dna Polymerase
 gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
           At The Polymerase Active Site
          Length = 580

 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418


>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
 gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
          Length = 580

 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418


>gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 908

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + S+ G  ++ AD + IE RVLA ++G++   +AF    D++  T    F V+ A
Sbjct: 668 IRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEA 727

Query: 423 QVTKDQRAIGKVMELALGY 441
           +V  + R   K +   + Y
Sbjct: 728 EVDANMRRSAKAVNFGIVY 746


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 597 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 656

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 657 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 714


>gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 221

 Score = 37.4 bits (85), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           +E R++A ++G++  ++AF +G D +    +  + +   ++T DQR+  K M   L Y
Sbjct: 1   MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 58


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 597 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 656

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 657 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 714


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 599 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 658

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 659 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 716


>gi|299142345|ref|ZP_07035477.1| exonuclease [Prevotella oris C735]
 gi|298576067|gb|EFI47941.1| exonuclease [Prevotella oris C735]
          Length = 162

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 46  DCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
           D  H P+ P+V  K      ++ +VAHN  F+ + LKA   C+ +D P + + CTL  +R
Sbjct: 61  DTNHAPIFPEVWCKVEPLIVNLPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYCTLAQSR 120


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
          Length = 876

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 597 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 656

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 657 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 714


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 599 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 658

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 659 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 716


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 37.4 bits (85), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 51  PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVLARSNGLP 106
           P  P+V  E  E   D  +VAHN+ F+  ++   F+   L  P+ + +CT+VLAR   LP
Sbjct: 86  PTFPEVAAEFAERLRDRVLVAHNALFDWNMISREFSRAGLRAPVEQRLCTMVLARDLRLP 145


>gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans]
 gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans]
          Length = 967

 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 357 LQIISDCVR-SC----VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           +Q+ SD V  SC    +   E + L+ AD   +E R+LA M+ ++  L+   + +DL++ 
Sbjct: 706 IQVGSDAVNISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIA 765

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
             A    +  ++VT D R   K +   + Y  G ++ 
Sbjct: 766 IAAHWNKIKESEVTPDLRNSTKQVCYGIVYGMGMRSL 802


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 599 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 658

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 659 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 716


>gi|295426488|ref|ZP_06819138.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295063856|gb|EFG54814.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 122

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 14/130 (10%)

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL---ES 224
           EI ++LE  P+   E   +++DQ INDRG  +D  L   +N  +  ++   DQ L   + 
Sbjct: 2   EITQKLERFPVPKNEWGNYWMDQDINDRGIRIDQQL---VNNAIRCQKNFHDQYLQVSQK 58

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           LT GL + +  L+ LK WL  + G+    L++    ++L +    T    QV + R   S
Sbjct: 59  LT-GLANPNPPLQ-LKDWLH-QQGVKTNSLSKAAVTQLLHTT---TGTVHQVLSLRQLLS 112

Query: 285 RSAVLKLNTL 294
           +S+V K   +
Sbjct: 113 KSSVKKYQAM 122


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score = 37.4 bits (85), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASE-GKKLVVADLAGIEA 386
            + H   +Q +T      + DP+    P+++     +R   + S+ G  +  AD + IE 
Sbjct: 599 GKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGKKIRGAFVPSQPGWLIFAADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F+V   +VT + R   K +   + Y
Sbjct: 659 RVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVEREEVTANMRRQAKAVNFGIVY 713


>gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383
           P   + H   +Q +T      +++P+    P+++     +R   + SE   L+  AD + 
Sbjct: 598 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 657

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +   + Y
Sbjct: 658 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 715


>gi|160891538|ref|ZP_02072541.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|317478357|ref|ZP_07937521.1| exonuclease [Bacteroides sp. 4_1_36]
 gi|156858945|gb|EDO52376.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|316905516|gb|EFV27306.1| exonuclease [Bacteroides sp. 4_1_36]
          Length = 163

 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFN---LDIPIHRWIC 95
           H + L D    P+ P V +E     + + +VAHN  F+ + LKA F    +D P + + C
Sbjct: 55  HGLTLADTQDAPIFPVVWQEIAPRIEGLPLVAHNKAFDESCLKAVFRTYCMDYPDYEFYC 114

Query: 96  TLVLARS--NGLPS 107
           TL  +R    GLP+
Sbjct: 115 TLQASRRAIKGLPN 128


>gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 875

 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLV-VADLAGIEA 386
            + H   +Q +T      + DP+    P+++     +R   + S+   L+  AD + IE 
Sbjct: 599 GKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGKKIRGAFVPSQPDWLIFAADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           RVLA +A ++  + AF+   D++  T    F+V   +VT + R   K +   + Y
Sbjct: 659 RVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVEREEVTSNMRRQAKAVNFGIVY 713


>gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus]
          Length = 482

 Score = 37.0 bits (84), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA--RSFNVAPA 422
           R  ++AS G   V AD + +E R++A ++G+   LK F  G D++ T  A  +       
Sbjct: 216 RDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKKAE 275

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448
            +T+++R   K++   + Y   A A 
Sbjct: 276 DITEEERRQTKIVVYGVLYGQSADAL 301


Searching..................................................done


Results from round 2




>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 675/675 (100%), Positives = 675/675 (100%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA
Sbjct: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS
Sbjct: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS
Sbjct: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
           KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK
Sbjct: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS
Sbjct: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII
Sbjct: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
           SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA
Sbjct: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN
Sbjct: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA
Sbjct: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
           RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN
Sbjct: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
           IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG
Sbjct: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660

Query: 661 LPLKAEGYESKRYRK 675
           LPLKAEGYESKRYRK
Sbjct: 661 LPLKAEGYESKRYRK 675


>gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 673

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/679 (58%), Positives = 490/679 (72%), Gaps = 10/679 (1%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  LFID ETRSP  L K G+  YAE+  + L A+  +D  ++LWDC  +PVMP  L + 
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++  V  VAHNS FER + K   N+ IP  RWICT  LAR NGLP++LK    ALK   
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG   E  YD  + NH +AW+LFGEYCK DV  TRE++KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E+ LW LDQ INDRGY +D+ L   L +++  ER KLD+EL++LT+G++ SSR  + 
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L  +LFL  GL L D+ E+T    LS    +T +A  + NNR+ +S+SA+LKLNTL  A+
Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQ-PNITQRAKDILNNRLSSSQSAILKLNTLSGAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP--DP 356
           + D RLRGTLQF GASRTGRWSGCVF PQNLPRP+ SHE +++ I       ++ P  DP
Sbjct: 300 SPDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIE-----SSNFPSDDP 354

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
           L+  SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGEQWKL AF  GED+Y T Y+++
Sbjct: 355 LRFASDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKA 414

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           FN+  + VTKDQRAIGKVMELALGYQGGA+ FQ MAS  GL+L  F+  +K  +  ++WE
Sbjct: 415 FNIPLSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWE 474

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            A+  C WMQE +PE A+ D FIGTACE VK AWR KH  V +LW +  +AF+  I++G+
Sbjct: 475 QAQRRCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGR 534

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
           +I AR+   VP + MKK   N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGK
Sbjct: 535 SISARRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGK 594

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656
           LTENIVQA+SRDILA GM+NAT+AGYDIVLTVHDEIVCETPDT EF++  L  LMT NP 
Sbjct: 595 LTENIVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPK 654

Query: 657 WAKGLPLKAEGYESKRYRK 675
           WAKGLPLKAEGYE+ RYRK
Sbjct: 655 WAKGLPLKAEGYEALRYRK 673


>gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 675

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/677 (58%), Positives = 489/677 (72%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  LFID ETRSP  L K G+  YAE+  + L A+  +D  ++LWDC  +PVMP  L + 
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++  V  VAHNS FER + K   N+ IP  RWICT  LAR NGLP++LK    ALK   
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG   E  YD  + NH +AW+LFGEYCK DV  TRE++KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E+ LW LDQ INDRGY +D+ L   L +++  ER +LD+E + LT G++ S+R  + 
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L  +LFL TGL L D+ E+T    LS    +   +  + NNR+ +S+SA+LKLNTL  A+
Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQ-PDIPQLSKAILNNRLSSSQSAILKLNTLSGAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           + D RLRGTLQF GASRTGRWSGCVF PQNLPR + + +E++++I  L + +    DPL+
Sbjct: 300 SPDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVP-IKDPLR 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
             SDCVRSC+IAS GKKL+VADLAGIEARVLAW+AGEQWKL AF  GED+Y T Y+++FN
Sbjct: 359 FASDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V  + VTKDQRAIGKVMELALGYQGGA+ FQKMAST GLNL  F+  +K  +  E+WE A
Sbjct: 419 VPLSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           +  C WMQE HPE A+ D FIGTACE VK+AWR KH  V +LW +  +AF+  I++G++I
Sbjct: 479 QRRCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+   VP + MKK   N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKLT
Sbjct: 539 SARRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDILA GM+NATKAGYDIVLTVHDEIVCE PDT EF++  L  LMT NP+WA
Sbjct: 599 ENIVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+ RYRK
Sbjct: 659 KGLPLKAEGYEAVRYRK 675


>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1]
 gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1]
          Length = 675

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L     +  DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L     +  DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL E +
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSETV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L     +  DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFC G      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L     +  DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/677 (58%), Positives = 482/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFC G      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L     +  DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPD   F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/677 (58%), Positives = 482/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFC G      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L     +  DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KG PLKAEGYE+KRYRK
Sbjct: 659 KGFPLKAEGYEAKRYRK 675


>gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 646

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/702 (29%), Positives = 321/702 (45%), Gaps = 84/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L K G+ +Y E  +  ++LFA+  D  PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+ DV   A N+ FER  L           +    W C++V A + GLP +L+ VG 
Sbjct: 61  LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN+P H  + W +F +Y   DV     
Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I +RL   P+ ++  + +++DQ INDRG  +D+ L     ++    RTKL + ++ +T  
Sbjct: 181 IQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKEIT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL    GL  + L +     +L   K   P+  QV   R + ++S+V
Sbjct: 239 ELENPNSVQQMKAWLSD-NGLETDTLGKKAVAELL---KSAPPKLSQVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   + + + +DGR RG  QF GA+RTGR+SG     QNLP+   S     + +     
Sbjct: 295 RKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSGN 354

Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
               +    D    +S  +R+  I  EG + +VAD + IEAR++AW AGE+W+   F  G
Sbjct: 355 FEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWRQDVFAKG 414

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
            D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A + M +   GL  +  
Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLTEDEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV                                           WRQ +  + + W 
Sbjct: 475 PPLVDA-----------------------------------------WRQSNPNIVKFWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR--- 577
            +  A  + ++       +       +        L + LPSGR L Y    +G N+   
Sbjct: 494 NVDHAVMEAVK------FKHTTSEYGLTFSCRSGMLFITLPSGRKLAYVKPKIGTNKFGG 547

Query: 578 ---SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
              +Y    +T++  R  +YG K  ENIVQA +RDIL   M         IV+ +HDE+V
Sbjct: 548 QCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQTL--RCCSIVMHIHDEVV 605

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E       +   +   M   P WAKGL L+A+GY +  Y+K
Sbjct: 606 IEAD--PSMSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016]
 gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 644

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/700 (29%), Positives = 318/700 (45%), Gaps = 82/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M ++ ID ET S  +L KCG+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL +  VT  A N+ FER  L    NL   +    W C++V +   GLP +L+ VG  L
Sbjct: 61  NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P H  + W  F  Y   DV     I 
Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMSIQ 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+       ++LDQ INDRG  +D+A      ++ +  R KL   ++ +T   +
Sbjct: 181 QRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITN--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   ++++K WL  + GL  + L +     +L +  +           R + ++S++ K
Sbjct: 239 ENPNSIQQMKEWL-ADNGLETDSLGKKAVAEMLKTAPEPLGTV---LELRQQLAKSSIKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A+ +DGR RG  QF GA+RTGR+SG +   QNLP+      E  + +       
Sbjct: 295 YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 354

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     +++S+ +R+  +  EG K +VAD + IEARV+AW+AGE+W++  F+ G D
Sbjct: 355 ALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGD 414

Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + ++ FNV   +  V    R  GK+ ELALGY G   A + M +   G+       
Sbjct: 415 IYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEELQP 474

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           LV                                           WRQ +  +++LW ++
Sbjct: 475 LVTA-----------------------------------------WRQSNPNITKLWWDV 493

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNN 576
             A +  ++           +   +        L ++LPSGR L Y           G +
Sbjct: 494 DHAVKTCVKQKIP------TETHGIKFIYQSGMLFIVLPSGRRLSYVKPRMGENVFGGES 547

Query: 577 RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            +Y     T++  R  +YG K  ENIVQA+SRDIL   M         IV  VHDEI+ E
Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN--CSIVAHVHDEIIIE 605

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  + S +   M   P+WA GL L A+GYE + Y+K
Sbjct: 606 AD--MRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643


>gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
          Length = 645

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/698 (30%), Positives = 323/698 (46%), Gaps = 80/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL+KCG+ KYA      V+LF +  D   V + D      +P+ + 
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +T VT  A N+ FER  L       +    W CT+V + + GLP +L++ G AL L
Sbjct: 64  SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+ EGK+LI  F   C+         RN+P H  E W  F  Y   DV    +I KR
Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVETEMQIQKR 183

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+     E ++LDQ INDRG  VD+ L      +    R +L   L+ LT   + +
Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQELTG--LDN 241

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              ++++K WL  + GL  + L +     ++   +        V + R + ++S+V K  
Sbjct: 242 PNSVQQMKQWL-ADHGLETDTLGKKVVAELV---RSAPEPLKTVLSLRQQLAKSSVKKYA 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349
            +  A+ +DGR  G  QF GA+RTGR+SG +   QNLP+   S     + +         
Sbjct: 298 AMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMRGGNYEAI 357

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                D    +S  +R+  +  +G+K +VAD + IEARV+AW AGE+W+LK FE G+D+Y
Sbjct: 358 SMLYEDIPDTLSQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGDDIY 417

Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + ++ F+V   +  V    R  GK+ ELALGY G   A + M +   GL       LV
Sbjct: 418 SASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGLAEEELQPLV 477

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                      WR  +  +++ W ++ +
Sbjct: 478 DA-----------------------------------------WRTSNPMITQFWWDVDR 496

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT 584
           A ++ ++    + +        ++       L + LPSGR L Y    +G N+    + T
Sbjct: 497 AVKECVKKRVPMESHG------LHFDYRSAMLFITLPSGRRLAYVKPRIGENQFGRESVT 550

Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                  ++  R  +YG K  ENIVQ  +RDIL   M         IV  VHDEI+ E  
Sbjct: 551 YMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMRTLRN--CAIVAHVHDEIIIEAD 608

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                +A  +   M   PSWAKGL L+A+GYE + Y+K
Sbjct: 609 RRMSLSA--VCEQMGRTPSWAKGLKLRADGYECEFYQK 644


>gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
 gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
          Length = 644

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/698 (30%), Positives = 330/698 (47%), Gaps = 78/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL K G+ +YAE  D  ++LF +  D  PV++ D      +P+ ++
Sbjct: 1   MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +A+ + +VT  A N+ FER  L   F + +    W CT+V +   GLP +L+        
Sbjct: 61  QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTGA 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             +K+ +GKELI  F   CK         RN P H  E W  F  Y   DV V   I ++
Sbjct: 121 DKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQEK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L+  P+  +E   + LDQ INDRG  +D+ L     Q  +  R +L   L+ LT   + +
Sbjct: 181 LQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + ++K+WL  + GL  + L + + + +L   K+      +V   R   ++S+V K  
Sbjct: 239 PNSVVQMKSWLSEK-GLETDSLDKASVKALL---KEAPEHLSEVLELRQLLAKSSVKKYT 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +  A+ +DGR RG LQF GA+RTGR++G +   QNLP+   S  E  + +         
Sbjct: 295 AMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDAL 354

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +        ++S+ +R+  +  +G K +VAD + IEARV+AW+AGE W+ + F T   +Y
Sbjct: 355 EILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKIY 414

Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + ++ F V   +VTK    R  GK+ ELALGY G   A + M +   GL       LV
Sbjct: 415 EASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEELKPLV 474

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                      WR  +  +  LW ++ +
Sbjct: 475 YA-----------------------------------------WRNANPNIVRLWWDVDR 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRS 578
           A ++ +        R R +   +  +     L++ LPSGR L Y               +
Sbjct: 494 AVKEAVTE------RCRTETHRIRFEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEAVT 547

Query: 579 YLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           Y     T++  R  +YG K  ENIVQA+SRD+L   M N  ++G +IV+ VHDE+V E P
Sbjct: 548 YEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLEVP 607

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              E     +  LM   P WA GL L+A+G+E   Y+K
Sbjct: 608 L--EICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643


>gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 646

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/702 (29%), Positives = 311/702 (44%), Gaps = 84/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L K G+ +Y E  +  ++LFA+  D  PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+  V   A N+ FER  L           +    W C+++ A + GLP +L+ VG 
Sbjct: 61  AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN+P H  + W  F  Y   DV     
Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETEMG 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  +L   P+ ++  E +++DQ INDRG  +D+ L      +    R +L   ++ +T  
Sbjct: 181 IQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKDMT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL    G+  + L +     +L   K        V   R + ++S+V
Sbjct: 239 ELENPNSVQQMKQWLSD-NGIETDSLDKKAVAELL---KDAPDNLADVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   + + + SDGR RG  QF GA+RTGR+SG     QNLP+         + +     
Sbjct: 295 RKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLSEARSLVRSGD 354

Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
               +    D    +S  +R+  I  E     VAD + IEARV+AW AGE W+ + FE G
Sbjct: 355 FDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFAGESWRQQVFEKG 414

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
            D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A + M +   GLN    
Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLNEEEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV                                           WRQ + R+ E W 
Sbjct: 475 PALVDA-----------------------------------------WRQANPRIVEFWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR--- 577
            + +A  + ++       +       +        L + LPSGR L Y    +G N+   
Sbjct: 494 AVDRAVMEAVKY------KHTTTDYGLTFSCKSGMLFITLPSGRKLAYVKPKIGTNKFGG 547

Query: 578 ---SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
              +Y     T++  R  +YG K  ENIVQA +RDIL   M         IV+ +HDE+V
Sbjct: 548 SCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDELV 605

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E     + +   +   M   P WAKGL L+A+GY +  Y+K
Sbjct: 606 IEAD--PKVSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645


>gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 644

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/700 (29%), Positives = 314/700 (44%), Gaps = 82/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M ++ ID ET S  +L K G+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL +  VT  A N+ FER  L    NL   +    W C+++ +   GLP +L+ VG  L
Sbjct: 61  NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P H  + W  F  Y   DV     I 
Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMSIQ 180

Query: 173 KRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +R     +     E ++LDQ INDRG  +D+        + +  R KL   ++ +T   +
Sbjct: 181 QRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITN--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   ++++K WL  + GL  + L +     +L +  +           R + ++S+V K
Sbjct: 239 ENPNSVQQMKDWL-ADNGLETDTLGKKAVAEMLKTAPEPLGTV---LELRQQLAKSSVKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A+ +DGR RG  QF GA+RTGR+SG +   QNLP+      E  + +       
Sbjct: 295 YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 354

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     +++S+ +R+  I  EG K +VAD + IEARV+AW+AGE+W++  F+ G D
Sbjct: 355 ALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGD 414

Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + ++ FNV   +  V    R  GK+ ELALGY G   A + M +   G+       
Sbjct: 415 IYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEELQP 474

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           LV                                           WRQ +  +++LW ++
Sbjct: 475 LVTA-----------------------------------------WRQSNPNITKLWWDV 493

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNN 576
            +A +  ++           +   +        L + LPSGR L Y           G +
Sbjct: 494 DRAVKTCVKQKTP------TETHGIKFIYQSGMLFIALPSGRRLAYVKPRMGENMFGGES 547

Query: 577 RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            +Y     T++  R  +YG K  ENIVQA+SRDIL   M         IV  VHDEI+ E
Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN--CSIVAHVHDEIIIE 605

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +A  +   M   P+WA GL L A+GYE + Y+K
Sbjct: 606 ADMGTSLSA--ICEQMAKMPTWANGLLLSADGYECQFYQK 643


>gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
 gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
          Length = 645

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/698 (30%), Positives = 314/698 (44%), Gaps = 80/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL+KCG+ KYA      V+LF +  D   V + D      +P+   
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +T VT    N+  ER  L       +    W CT+V + + GLP +L++ G AL L
Sbjct: 64  SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+ EGK+LI  F   C+         RN+P H  E W  F  Y   DV    +I KR
Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQKR 183

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+     E ++LDQ INDRG  VD+ L      I    R +L   +  LT   + +
Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRELT--ELEN 241

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               +++K WL  + GL  + L +     ++ +  +      +V + R + ++S+V K  
Sbjct: 242 PNSAQQMKQWL-ADHGLETDTLGKKAVAELVKTAPEP---LREVLSLRQQLAKSSVKKYT 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349
            +  A+ +D R  G  QF GA+RTGR+SG +   QNLP+         + +         
Sbjct: 298 AMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEAL 357

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                D    +S  +R+  +  +G+K +VAD + IEARV+AW AGE+W+LK FE G D+Y
Sbjct: 358 SVLYEDIPDTLSQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGGDIY 417

Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + ++ F+V   +  V    R  GK+ ELALGY G   A + M +   GL       LV
Sbjct: 418 CASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGLAEEELQPLV 477

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                      WR  +  +++ W ++ +
Sbjct: 478 DA-----------------------------------------WRGSNPMITQFWWDVDR 496

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRS 578
           A +  I        R   +   +        L + LPSGR L Y           G + +
Sbjct: 497 AVKDCIRQ------RIPTETHGLRFDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVT 550

Query: 579 YLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           Y+  + T++  R  +YG K  ENIVQ  +RDIL   M         IV  VHDEI+ E  
Sbjct: 551 YMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQTLKN--CSIVAHVHDEIIIEAD 608

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                + + +   M   P WAKGL L+A+GYE + Y+K
Sbjct: 609 R--RMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644


>gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
 gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
          Length = 646

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/698 (31%), Positives = 332/698 (47%), Gaps = 83/698 (11%)

Query: 4   LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S +DL KCG+  YA+     V+LFA+ FD    ++ D      +P  +  A+
Sbjct: 5   LEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAAI 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + DV   A N+ FERT L   F   +    W C+ V A    LP +L+ VG  L L  Q
Sbjct: 65  FDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQQ 124

Query: 122 KMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLE- 176
           KM+EGK+LI  F   CK         RN P H  E W LF  YC  DV V +EI ++L+ 
Sbjct: 125 KMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRKLQH 184

Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            P+   E EL+ LDQ INDRG  VD  L         + +  + +    LT   + +   
Sbjct: 185 FPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTG--LENPNS 242

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           + ++K+WL  E G+ +E L++ T   ++  +     +  ++   R+  ++++V K   + 
Sbjct: 243 VAQIKSWLG-ENGVEMESLSKKTVAGLIEESDG---EVQELLRLRLLMAKTSVKKYEAME 298

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT------S 349
            ++ SDGR+ G LQF GA+RTGRW+G +   QNLP+      E+ + +            
Sbjct: 299 RSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDVELL 358

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
             S P+   ++S+ +R+  I   G + VVAD + IEARVLAW++GE+W+L+ F +   +Y
Sbjct: 359 YDSTPN---VLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKIY 415

Query: 410 VTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + +  F+V   +VTK    R  GK+ ELALGY G   A   M +   GL     A   
Sbjct: 416 EASASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMGALDMGLVEEELA--- 472

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                  +  AWR  +  +++ W ++  
Sbjct: 473 --------------------------------------PLVSAWRSANPHITQFWWDVDA 494

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--NNRSYLNTTT 584
           A  + +   K   A +      +  +     L + LPSGR L Y       N+   N  T
Sbjct: 495 AAVKAVTEKKKTRAGR------IVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLT 548

Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                  ++  R  TYG KL ENIVQ  +RD+LAE M+   + GY IV+  HDEI+ E P
Sbjct: 549 YEGIAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVP 608

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +    +   +  +M   P WA GLPL+A+GYE   Y+K
Sbjct: 609 EGT-GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645


>gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
 gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
          Length = 646

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/702 (29%), Positives = 317/702 (45%), Gaps = 84/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L K G+ +Y E  +  ++LFA+  D   V++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALEN  V   A N+ FER  L           +    W C+++ A + GLP +L+ VG 
Sbjct: 61  LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN+P H  + W +F +Y   DV     
Sbjct: 121 VLGLEKQKLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I +RL   P+ ++  + +++DQ INDRG  +D+ L     ++    RT+L + ++ +T  
Sbjct: 181 IQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKEIT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL    GL  + L +     +L   K  +P+  QV   R + ++S+V
Sbjct: 239 ELENPNSVQQMKAWLSD-NGLETDTLGKKAVTELL---KSASPKLSQVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   + + + +DGR RG  QF GA+RTGR+SG     QNLP+         + +     
Sbjct: 295 RKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSGN 354

Query: 349 SIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                    D    +S  +R+  I  EG + +VAD + IEARV+AW AGE+W+ + F  G
Sbjct: 355 FEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWRQEVFAKG 414

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
            D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A + M +   GL     
Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV                                           WRQ +  + + W 
Sbjct: 475 PPLVDA-----------------------------------------WRQSNPNIVKFWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR--- 577
            +  A  + ++       +       +        L + LPSGR L Y    +G N+   
Sbjct: 494 NVDHAVMEAVK------FKHTTSSYGLTFSCRSGMLFITLPSGRKLAYVKPKLGTNKFGG 547

Query: 578 ---SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
              +Y     T++  R  +YG K  ENIVQA +RDIL   M         IV+ +HDE+V
Sbjct: 548 QCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDEVV 605

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E       +   +   M   P WAKGL L+A+GY +  Y+K
Sbjct: 606 IEAD--PRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 646

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/702 (29%), Positives = 313/702 (44%), Gaps = 84/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L+K G+ +Y E  D  +ILF +  D   V++ D      +P+ + 
Sbjct: 1   MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
           +ALE+  VT  A N+ FER  L           +    W C++V +   GLP +L+ VG 
Sbjct: 61  DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGKELI  FC             RN P+H  E W  F  Y   DV    +
Sbjct: 121 VLGLEKQKLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAEMQ 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  RL+  P+     + ++LDQ INDRG  VD+       +I +V R  L  +++ LT  
Sbjct: 181 IQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQVLT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            +++   + ++K WL    G+  E L +     ++     +  +  ++   R + ++S+V
Sbjct: 239 SLTNPNSVVQMKGWLSD-NGIETETLGKKAVAALIDE---VPDEMSEILALRQKLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   +  ++  DGR+RG  QF GA+RTGR++G +   QNLP+         + +     
Sbjct: 295 RKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSGD 354

Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             + D    D    +S  +R+  I +  +  +VAD + IEARV+AW AGE W+   F  G
Sbjct: 355 YDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAGESWRADVFAKG 414

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
            D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A + M +   GL     
Sbjct: 415 GDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMGALEMGLAEEEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV                                          AWR  +  +   W 
Sbjct: 475 PELV-----------------------------------------SAWRCSNPNIVRFWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------G 574
           ++  A ++ I++  +           V+       L + LPSGR L Y           G
Sbjct: 494 DVDSAVKKAIKSKTS------TATHGVHFSCRSGMLFITLPSGRVLSYVKPCMGENKFGG 547

Query: 575 NNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            + +Y    +T++  R  +YG K  ENIVQA SRDIL   M         IV  VHDEI+
Sbjct: 548 ESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMKTL--RCCSIVAHVHDEII 605

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E       +   +   M   P WA+GL L+A+GYE + Y+K
Sbjct: 606 IEAD--PRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645


>gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 647

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 206/700 (29%), Positives = 316/700 (45%), Gaps = 82/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +L +D ET S ++L K G+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 4   INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL +  VT  A N+ FER  L    NL   +    W C++V +   GLP +L+ VG  L
Sbjct: 64  NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123

Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P H  + W  F  Y   DV     I 
Sbjct: 124 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEMLIQ 183

Query: 173 KRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL    +     + ++LDQ INDRG  +D+       ++ +  R KL   ++ +T   +
Sbjct: 184 QRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITN--L 241

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   ++++K WL  + GL  + L +     +L +  +           R + ++S+V K
Sbjct: 242 ENPNSVQQMKDWL-ADNGLETDSLGKKVVAEMLKTAPEPLGTV---LELRQQLAKSSVKK 297

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A+ SDGR RG  QF GA+RTGR+SG +   QNLP+      E  + +       
Sbjct: 298 YTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 357

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     +++S+ +R+  I  EG K +VAD + IEARV+AW+AGE+W+L  F+ G D
Sbjct: 358 ALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGGD 417

Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + ++ FNV   +  V    R  GK+ ELALGY G   A + M +   G+       
Sbjct: 418 IYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMGALEMGIEEEELQP 477

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           LV                                           WRQ +  +++LW ++
Sbjct: 478 LVTA-----------------------------------------WRQSNPNITKLWWDV 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NN 576
            +A +  ++               +        L ++LPSGR L Y             +
Sbjct: 497 DRAVKTCVKQKTP------TATHGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENMFGSES 550

Query: 577 RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            +Y     T++  R  +YG K  ENIVQA+SRDIL   M         IV  VHDEI+ E
Sbjct: 551 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN--CSIVAHVHDEIIIE 608

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +A  +   M   P+WA GL L A+GYE + Y+K
Sbjct: 609 ADMGMSLSA--ICEQMAKTPTWANGLLLSADGYECQFYQK 646


>gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
 gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
          Length = 646

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/701 (30%), Positives = 320/701 (45%), Gaps = 82/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL K G+ +Y E  D  ++LF +  D   V++ D +    +P  + 
Sbjct: 1   MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
           +AL + DVT  A N+ FER  L     L     +    W CT+V +   GLP +L+  G 
Sbjct: 61  DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  F   CK         RN P H  + W  F  Y   DV     
Sbjct: 121 VLGLEKQKLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETEMA 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++L   P+       ++LDQ INDRG  +D+ L     ++ +  R+KL   +  LT  
Sbjct: 181 IQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   + ++K WL    GL  + L +     +L +  +      +V   R   ++S+V
Sbjct: 239 ELENPNSVVQMKQWLSD-HGLETDTLGKKAVVELLKTASEP---LGKVLELRQSLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   +   + +DGR RG  QF GA+RTGRW+G +   QNLP+      E  + +     
Sbjct: 295 KKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPDLEQARSLVRSGN 354

Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
               +       +++S+ +R+  +  +G K +VAD + IEARV+AW+AGE+W+ + FE+G
Sbjct: 355 FAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVFESG 414

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F+V   +  V    R  GK+ ELALGY G   A + M            
Sbjct: 415 GDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMG----------- 463

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A+E        + +  AWR  + ++  LW +
Sbjct: 464 -----------------------------ALEMGLEEEELQPLVSAWRSSNPKIVRLWWD 494

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           + +A  + +        R   +   +          + LPSGR L Y    +G NR   +
Sbjct: 495 IDRAAMKAVRE------RTTTETHGIRFSYQSGMFFITLPSGRRLAYVKPRIGQNRFGSD 548

Query: 582 TTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             T       ++  R  +YG KLTENIVQA SRDIL   M N       IV+ VHDEIV 
Sbjct: 549 CITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNLRH--CSIVMHVHDEIVI 606

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E       +   +   M   P WAKGL L+A+GYE+  Y+K
Sbjct: 607 EADR--RMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645


>gi|332800352|ref|YP_004461851.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
 gi|332698087|gb|AEE92544.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
          Length = 652

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 337/702 (48%), Gaps = 78/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DLTKCG+  Y  AED  ++LF + F++ PVE+ D      +P  + 
Sbjct: 1   MTILSIDIETYSSVDLTKCGVYAYTQAEDFEILLFGYAFNNDPVEVIDLASGEQIPDEVT 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            A+ ++ V   A N+ FERT L    N  +P   W C+   A + GLP  L  V + L L
Sbjct: 61  NAITDSAVIKTAFNANFERTCLAKYLNKPMPPEEWRCSQAHALTLGLPLNLAGVAKCLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
           + QKM EGK LI  F   CK         RN P+H  E W  F  YCK DV V R I KR
Sbjct: 121 ADQKMSEGKALIRYFSIPCKPTKANGGRTRNLPHHDREKWETFKAYCKQDVVVERSIRKR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P++ KE +LW LDQ IND G  VD  L         + + +L  E   LT   + +
Sbjct: 181 LENYPMTDKELKLWSLDQKINDYGVRVDRQLVENAICCDGIHQKELMAEAIDLTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LKTWL     + ++ L++   + +L+      P   +V   R   S+++V K  
Sbjct: 239 PNSPAQLKTWLKGNHNIQVDSLSKANVEELLNKIN--HPTVTRVLELRQDMSKTSVRKYE 296

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +  AM  DGR+RG LQ+ GA+RTGRW+G +   QNLPR +    +L + +       + 
Sbjct: 297 AMDRAMGGDGRIRGLLQYYGANRTGRWAGRLVQVQNLPRNNMKDLDLARKLLLAGDYESL 356

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +        ++S  +R+  + S G + +++D + IEARV+AW+AGE+W +  F+    +Y
Sbjct: 357 ELLFDSVPDVLSQLIRTAFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHGKIY 416

Query: 410 VTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
             T ++ F V    + K     + R  GKV  LA GYQG   A + M +   GL  +   
Sbjct: 417 EMTASKMFGVPMELIVKGNPEYELRQKGKVAVLACGYQGSVGALKAMGALNMGLKEDE-- 474

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                     +  AWR+ +  + +LW +
Sbjct: 475 ---------------------------------------LPAIVAAWRESNPNIVKLWWD 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------G 574
           +  A  + +++  +I  +       +        L + LPSGR+L Y             
Sbjct: 496 VEDAAIRAVKDRTSITMQ-----YGLKFYYKSGVLFIRLPSGRNLAYVKPRIELDTRFNK 550

Query: 575 NNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           +  +Y       +  R  TYGGKLTENI+QA++RD LAE ++   KAGY I   VHDE+V
Sbjct: 551 DKLTYEGIMLGNKWARIDTYGGKLTENIIQAIARDCLAESLLRLDKAGYKIAFHVHDEVV 610

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + P     +   +  +M+ + +WAKGLPL+AEG+E+  Y K
Sbjct: 611 LDVPQG-FGSLKEVEEIMSQDINWAKGLPLRAEGFETNYYMK 651


>gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
 gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
          Length = 645

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 217/700 (31%), Positives = 326/700 (46%), Gaps = 81/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L +D ET S +DL+KCG+ KY+E  D  ++LFA+  D  PVE+ D   D  +P  + 
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +L +  V   A N+ FER  L     LD  +    W CT+V   + GLP +L  VG  L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P+H    W  F  Y   DV V   I 
Sbjct: 121 GLDKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIAIQ 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+     + ++LDQ INDRG  +D        Q+ ++ +  L+Q+L+ LT   +
Sbjct: 181 GKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   + +++ WL L+ GL  E L +     +L   + +     QV   R + ++S+V K
Sbjct: 239 ENPNSVLQMRGWL-LDHGLETESLGKKAVAELLE--QPIDENLKQVLVLRQQLAKSSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
              +     SD R RG  QF GA+RTGR++G     QNLP+   S     + +       
Sbjct: 296 YQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSLVKQSNFE 355

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +   ++S+ +R+  +  EG K +V+D + IEARV+AW++GE+W+ + F+ G D
Sbjct: 356 MLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGD 415

Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNTFAH 464
           +Y  + ++ F V   +  V    R  GK+ ELALGY G   A + M A   GL  +    
Sbjct: 416 IYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMDALEMGLTEDELQP 475

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           LV +                                         WR  +  ++ELW  +
Sbjct: 476 LVNS-----------------------------------------WRDSNINITELWWAV 494

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNT 582
            +A +  ++       R+      +  +     L + L SGR LVY    +G N+     
Sbjct: 495 DKAVKTCVKE------RRSTSTHGIKFEYKSGFLFIQLLSGRKLVYVKPKIGENKFGGEA 548

Query: 583 T-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                   T++  R  +YG K  ENIVQA++RDIL   M N  K  Y IV  VHDE++ E
Sbjct: 549 VTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLRK--YRIVGHVHDEVIIE 606

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P   E     +  LM+  P WA+GL L A+GYE + Y+K
Sbjct: 607 VP--MESKVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644


>gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
 gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
          Length = 662

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/718 (28%), Positives = 317/718 (44%), Gaps = 100/718 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S I+L+KCG+ KYAE  D  ++LF +  D   V++ D      +PQ L 
Sbjct: 1   MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKAC---FNLDIPI-----------------HRWICTLV 98
           +AL +  +   A N+ FER  L        + +                     W C++V
Sbjct: 61  DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154
            A + GLP +L+ VG  L L  QK+ EGKELI  F   C          RN+P H  E W
Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQKLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPEKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F  Y   DV     I  RL   P+       +++DQ INDRG  +D+ L     ++  
Sbjct: 181 DAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLVTEAIEMDT 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             RT+L   ++ +T   + +   ++++K WL    GL  + L +     ++ +     P+
Sbjct: 241 RSRTELTSAIKKMTD--LENPNSVQQMKQWLS-NNGLETDSLGKKVVAELIKT---APPE 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K  T+  A+  DGR RG   F GA+RTGRW+G +   QNLP+ 
Sbjct: 295 LQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLPQN 354

Query: 333 SRSHEELDQIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +              D    +S  +R+  I     +  V+D + IEARV+
Sbjct: 355 HLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447
           AW AGE W+ K F  G D+Y  + ++ F+V   +  +    R  GK+ ELALGY G   A
Sbjct: 415 AWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSIGA 474

Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            + M +   GL+ +    LV                                        
Sbjct: 475 LKAMGAIEMGLSEDELPPLVDA-------------------------------------- 496

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              WRQ +  + + W ++ +A  + +++      +       +        L + LPSGR
Sbjct: 497 ---WRQTNPNIVKFWWDVDRAVMEAVKH------KHTTSCYGLTFSCRSGMLFITLPSGR 547

Query: 567 SLVY--RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
           +L Y    +G N+      +Y    +T++  R  +YG K  ENIVQA SRDIL   M   
Sbjct: 548 NLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDILCYAMKTL 607

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                +IV+ +HDE+V E       +  +L   M   P WA+GL L+A+GY    Y+K
Sbjct: 608 RN--CEIVMHIHDELVIEAD--PCMSLDVLCEQMGRTPPWARGLKLRADGYTCPFYKK 661


>gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/702 (29%), Positives = 328/702 (46%), Gaps = 81/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S ++L K G+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            AL +  V   A N+ FER  L     +     +    W CT++ A + GLP +L+ VG 
Sbjct: 61  NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L    QK+ +GK LI  F   C          RN P+H  E W++F  Y K DV     
Sbjct: 121 VLGFKKQKLSQGKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNKRDVETEMA 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  +L   P+S  E + ++LDQ IND G  +D+          +  + +  ++ + LT  
Sbjct: 181 IQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKAKELTG- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +     +LK WL L+ G+  + L++     +L  +     +  +  + R + ++S+V
Sbjct: 240 -LENPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQDSDG---EIHEALSIRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K  ++   + SD R RG +QF GA+RTGR+SG +   QNLP+      +  + +     
Sbjct: 295 KKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQARSLVKSGN 354

Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
               D        ++S+ +R+  I   G + +VAD + IEARV+AW+AGE+W++  F  G
Sbjct: 355 FTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAGG 414

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
            D+Y  + ++ FNV   +  +    R  GK+ ELALGY G   A + M +   GL  +  
Sbjct: 415 GDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMGAIQMGLVEDEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                      +  AWR  +  ++ LW 
Sbjct: 475 K-----------------------------------------PIVDAWRNSNPNITSLWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYL 580
            + +A +  ++  + I      ++  + +      L + LPSGR L Y    +G NR   
Sbjct: 494 RIDRAVKTVVKTKQPI------EIYGIGIFYQSGILFIKLPSGRRLAYVKPLIGENRFGG 547

Query: 581 NTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            +        T++  R  +YG K  ENIVQA+SRDILAE M+      + IV+ VHDE+V
Sbjct: 548 ESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIVMHVHDEVV 607

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E P+    +   +  +M+  P+WAKGL L A+GYE + Y+K
Sbjct: 608 IEAPNKVS-SVEEICRIMSETPAWAKGLILNADGYECEFYKK 648


>gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [butyrate-producing bacterium SM4/1]
          Length = 646

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/702 (30%), Positives = 314/702 (44%), Gaps = 84/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L K G+ +Y E  D  ++LFA+  D  PV+  D      +P  + 
Sbjct: 1   MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+  VT  A N+ FER  L           +    W C++V A   GLP +L+  G 
Sbjct: 61  CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN P H  + W  F +Y   DV     
Sbjct: 121 VLGLEKQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETEMS 180

Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  RL   P+     E ++LDQ INDRG  +D+ L     Q+    R++L Q ++ LT  
Sbjct: 181 IQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELTS- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL  + G+  + L +     +L +  +   Q  +V   R + ++S+V
Sbjct: 240 -LDNPNSVQQMKQWL-ADNGVETDTLGKKAVAELLKTAPQ---QLQKVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   +  A+ +DGR RG  QF GA+RTGRW+G +   QNLP+         + +     
Sbjct: 295 KKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDDLTEARGLVRAGG 354

Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
               +    D    +S  +R+  +    +K +VAD + IEARV+AW+A E+W+   F  G
Sbjct: 355 FDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQDVFAEG 414

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
           +D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A + M +   GL+ +  
Sbjct: 415 KDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLSEDEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV                                          AWRQ + ++ + W 
Sbjct: 475 PALV-----------------------------------------SAWRQANPKIVQFWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYL 580
            + +A    +        +       +        L + LPSGRSL Y    +G NR   
Sbjct: 494 AVDRAVMDAV------TRKTTTKTHGIIFSARNGMLFITLPSGRSLSYVKPKIGENRFGG 547

Query: 581 N-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           +         T++  R  +YG K  ENIVQA SRDIL   M         IV+ +HDE+V
Sbjct: 548 DCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMKTL--RCCSIVMHIHDEVV 605

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E        A  +   M   P WA GL L+A+GYE+  Y+K
Sbjct: 606 IEADRRMSLQA--VCDQMGRTPPWANGLQLRADGYETDFYKK 645


>gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 645

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/698 (30%), Positives = 318/698 (45%), Gaps = 77/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M ++ ID ET S + L K G+ KYAE  D  ++LF +  D   V++ D  +   +P+ + 
Sbjct: 1   MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  VT  A N+ FER  L     + +  + W C+++ A + GLP +LK VG  L L
Sbjct: 61  AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             QK+EEGK+LI  F   CK         RN P +  E W+LF EY K DV     I  R
Sbjct: 121 DRQKLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQAR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L+  P+   E E + +DQ INDRG  VD           +  +    +  ++LT   + +
Sbjct: 181 LKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQNLTD--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  + GL +E L ++   ++L +    T    +V   R + S+++V K  
Sbjct: 239 PNSPLQLMDWLHGK-GLSVESLAKSEVTKMLKT---ATGDVREVLELRQQLSKTSVKKYM 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +     +D R RG  QF GA+RTGR++G +   QNLP+   +  +  + +         
Sbjct: 295 AMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTLVKDGDFELL 354

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           D        ++S  +R+  +     + VVAD A IEARVLAW+AGEQW L  F    D+Y
Sbjct: 355 DMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDVFREHGDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             T +R F+    +     D R  GK   L+ GY G   A   M +  +G+       LV
Sbjct: 415 CETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMGAVESGMKEEELQPLV 474

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                      WR  +  + + W ++ +
Sbjct: 475 D-----------------------------------------LWRASNPHIVQFWWDVDR 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTT- 583
           A +  ++       R   +   +        L + LPSGR L Y    +G NR    +  
Sbjct: 494 AVKTCVK------RRVEVETHGIRCVYKSGVLFIRLPSGRELAYAKPRIGENRFGGESVT 547

Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                 T++  R  T+GGKL ENI Q  +RD+L   M      G+DIV+ VHDEIV E P
Sbjct: 548 YEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVHDEIVLEVP 607

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                +   +  +M  NP WAKGLPLKA+GYE + YRK
Sbjct: 608 YGVS-SVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644


>gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6]
 gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6]
          Length = 645

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/700 (30%), Positives = 334/700 (47%), Gaps = 81/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID E+ S  D++KCG  KY+E  D  ++LFA+  D  PVE+ D      +P+ + 
Sbjct: 1   MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           ++L +  V   A N+ FER  L     L+  +    W CT+V A + GLP +L  VG  L
Sbjct: 61  KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+L+  FC             RN P H  + WR F  Y   DV V   I 
Sbjct: 121 GLDKQKLSEGKDLVRYFCMPCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRDVEVEVAIQ 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++L   P++ +  E ++LDQ INDRG  +D+ LA +   + +V + +++++L+ LT   +
Sbjct: 181 QKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKKLTG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   + ++++WL  + GL +E L +   + ++        +  +V   R + ++S+V K
Sbjct: 239 ENPNSVLQMRSWLS-QHGLEVESLGKAAVKELIEQTNDD--KLKEVLLLRQQLAKSSVRK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP--- 347
              +      D R RG  QF GA+RTGR++G     QNLP+   S     + +       
Sbjct: 296 YQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARELVRNGEYE 355

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +  +++S+ +R+  I   G K +V+D + IEARV+AW+AGE+W+ + F  G D
Sbjct: 356 LLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWRKEVFRNGGD 415

Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + ++ F V   +  V    R  GK+ ELALGY G   A   M +   GL  +    
Sbjct: 416 IYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMGALNMGLTEDELQP 475

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           LV +                                         WR+ +  +++LW ++
Sbjct: 476 LVAS-----------------------------------------WRETNPAITKLWWDI 494

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR----- 577
             A +  +  G       + +   +  +     + + L SGR L Y    +G NR     
Sbjct: 495 DSAAKGCVSVGA------KTETHGITFEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAA 548

Query: 578 -SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            +Y    TT++  R  +YG K  ENIVQA++RDIL   M N     Y IV  VHDE++ E
Sbjct: 549 VTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNLKD--YRIVGHVHDEVIIE 606

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P   E     +  +M+  P+WAKGL L A+GYE   Y+K
Sbjct: 607 VPK--EVTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644


>gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 662

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/718 (28%), Positives = 319/718 (44%), Gaps = 100/718 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ++L KCG+ KYAE     ++LF +  D  PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF--------------------NLDIPIHRWICTLV 98
           +AL +  VT  A N+ FER  L                           +    W C++V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154
            +   GLP +L+ VG  L L +QKM+EG+ELI  F   CK         RN P H  + W
Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCIPCKETKANGGRTRNLPQHALDKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            LF  Y K DV V   I +RL+  P+  +  E ++LDQ INDRG  +D+ LA     +  
Sbjct: 181 NLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVALDA 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R  L   L+  T   + +   + ++  WL  + GL  + L +   Q +L + ++    
Sbjct: 241 KSRESLMAALKERTG--LENPNSVIQMLDWL-EQHGLKTDSLGKKNVQELLKTAQEP--- 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K   +      DGR RG  QF GA+RTGR++G     QNLP+ 
Sbjct: 295 LRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354

Query: 333 SRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +         D        ++S  +R+  +   G K VV+D + IEARV+
Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447
           +W+AGE+WK + F  G+D+Y +T ++ F V   +  +  + R  GK+ ELA GY G   A
Sbjct: 415 SWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSVGA 474

Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            + M +   G+                                                +
Sbjct: 475 LKAMGALDMGIPEEE-----------------------------------------LGNL 493

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            ++WR  +  + + W ++  A + TI+    +       V  +        L + LPSGR
Sbjct: 494 VQSWRSANPHIVDFWWQVDGAVKTTIKQRIPVW------VNNIRFFCQSGMLFIELPSGR 547

Query: 567 SLVY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
            L Y    +G NR    +        T++  +  +YG K  ENIVQ +SRDIL   M   
Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQTL 607

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 IV  VHDE++ E P   + +   +   M   P WA+GL L+A+GY  + Y+K
Sbjct: 608 --RCCAIVGHVHDELIIECPK--DTSVDAICEEMGRTPPWAEGLVLRADGYACEFYQK 661


>gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 662

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/718 (29%), Positives = 320/718 (44%), Gaps = 100/718 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S IDL KCG+ KYAE  +  ++LF +  D   V++ D      +PQ + 
Sbjct: 1   MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98
           +AL + +VT  A N+ FER  L    +                      +    W C++V
Sbjct: 61  DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154
            A + GLP +LK VG+ LKL  QKM+EGK LI  F   C          RN P H  E W
Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQKMDEGKALIKYFSVPCAPTKANGGRTRNMPFHDPEKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F  Y K DV V   I +RL   P+     + + +DQ INDRG  +D+ L     ++  
Sbjct: 181 ETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLVAKAIEMDT 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             RT+L   ++ +T   + +   ++++K WL    GL  + L +     ++ +      +
Sbjct: 241 RSRTELTTAMKDIT--ELDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKT---APSE 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K  T+  A+  DGR RG   F GA+RTGRW+G +   QNLP+ 
Sbjct: 295 LQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQLQNLPQN 354

Query: 333 SRSHEELDQIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +              D    +S  +R+  I  +G +L V+D + IEARV+
Sbjct: 355 HLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447
           AW AGE W+ K F  G D+Y  + ++ F+V   +  V    R  GK+ ELALGY G   A
Sbjct: 415 AWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGA 474

Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            + M +   GL+ +    LV                                        
Sbjct: 475 LKAMGAIEMGLSEDELPPLVDA-------------------------------------- 496

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              WRQ +  + + W ++ +A  + +++     +        +        L + LPSGR
Sbjct: 497 ---WRQTNPHIVKFWWDVDRAVMEAVKHKHTTSS------YGLTFSCRSGMLFITLPSGR 547

Query: 567 SLVYRDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
           +L Y           G   +Y     T++  R  +YG K  ENIVQA SRDIL   M   
Sbjct: 548 NLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDILCYAMKTL 607

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                +IV+ +HDE+V E       +  +L   M   P WA+GL L+A+GY +  Y+K
Sbjct: 608 RN--CEIVMHIHDELVIEAD--PHMSLDVLCEQMGRTPPWARGLQLRADGYTTPFYKK 661


>gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
 gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
          Length = 658

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/705 (33%), Positives = 335/705 (47%), Gaps = 82/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + TL ID ET S +D+   G  KY E  D  ++LFA+ F+D PV++ D  +   +P  + 
Sbjct: 5   IDTLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVF 64

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + ++   A N+ FER  +K  +    P  +W CT+V A + GLPS+L  VG+ALK 
Sbjct: 65  YALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKF 124

Query: 119 --SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  F   CK         RN P H  E W  F EYCK DV V REI 
Sbjct: 125 EEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIR 184

Query: 173 KRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             L    +K  EQ+LW LDQ INDRG   D+ L     +       +L +    LT   +
Sbjct: 185 NLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTG--L 242

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAVL 289
            +     ++K W+    G  ++ LT+T+   ++     L   + I++   R   +++++ 
Sbjct: 243 ENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAKTSIK 302

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT- 348
           K +T+  A   DGR+RG LQF GA+RTGRW+G +   QNLP+      +  +        
Sbjct: 303 KYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGKF 362

Query: 349 -----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                   S PD L   S  +R+  I  EG + +V+D + IEARV+AW AGEQW+L  F 
Sbjct: 363 QEVEFLFDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFS 419

Query: 404 TGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           T   +Y  + ++ F VA   + K  + R  GK+ ELALGY G   A   M     +    
Sbjct: 420 THGKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEE 479

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LVK+                                         WR  +  +++ W
Sbjct: 480 LPGLVKS-----------------------------------------WRNANPNITKFW 498

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------- 573
            ++ +A ++ I     +  +       +    D   L + LPSGR L Y           
Sbjct: 499 WDVDKAAKKVIRERTTVNLQ-----YGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETF 553

Query: 574 -GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
            G+  +Y  +  T++Q  R  TYG KL ENIVQA SRD L E M    KAGYDIV+ VHD
Sbjct: 554 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDIVMHVHD 613

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+V + P  D      +  LM     WA GLPLKA+GYE   Y+K
Sbjct: 614 EVVLDIPK-DRATVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657


>gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/716 (29%), Positives = 317/716 (44%), Gaps = 98/716 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+ KY E  D  ++LF +  D  PV++ D      +PQ + 
Sbjct: 1   MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD------------------IPIHRWICTLVLA 100
            AL N +VT  A N+ FER  L                         +    W CT++ +
Sbjct: 61  AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK---GETHECLYDRNKP-NHREAWRL 156
              GLP +L+ VG  L L  QK+ EGKELI  FC+            RN P N  + W  
Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQKLTEGKELIKYFCQPCAPTKANSGRTRNLPENAPDKWAS 180

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F  Y   DV V   I ++L   P+     E ++LDQ INDRG  +D+ L      +    
Sbjct: 181 FKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQAIDMDTRS 240

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           R +L   ++ LT   + +   ++++K WL    GL+++ L +     +L +      +  
Sbjct: 241 RAELTAAMKKLTA--LDNPNSVQQMKQWLSD-NGLNVDSLGKKEVAEMLKT---APAELQ 294

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           QV   R + ++S+V K   + +A+ +DGR RG  QF GA+RTGRW+G +   QNLP+   
Sbjct: 295 QVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHL 354

Query: 335 SHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                 + +         +    D    +S  +R+  +   G K +V+D + IEARVLAW
Sbjct: 355 PDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLAW 414

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQ 449
            AGE W+ + FE G D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A +
Sbjct: 415 FAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALK 474

Query: 450 KMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            M +   GL+      LV                                          
Sbjct: 475 AMGALEMGLSEGELQPLVTA---------------------------------------- 494

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            WR  +  + + W ++ +A    ++           ++  +        L + LPSGR L
Sbjct: 495 -WRNSNQNIVKFWWDIDRAAMNAVKY------HMDSEICGIKFSYKSGMLFITLPSGRRL 547

Query: 569 VYRDV--------GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            Y           G   +Y     T++  R  TYG KL ENIVQA SRDIL   M   + 
Sbjct: 548 SYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRDILCYAMRTLSH 607

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               I + +HDE+V E   +   N   +   M   P+WA GL L+A+GYE+  Y+K
Sbjct: 608 --CFITMHIHDELVIEA--SLGVNLKSICEQMGRTPTWANGLKLRADGYETMFYKK 659


>gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
 gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
          Length = 643

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/698 (32%), Positives = 337/698 (48%), Gaps = 79/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL K G+ KYAE  D  ++LFA+  +D  V++ D  +  ++P+ + 
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + +V   A N+ FER  L       +    W CT++ +   GLP +L+ VGE LKL
Sbjct: 61  SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM EGK LI  F   CK      +  RN  +H  E W  F EY + DV     I K+
Sbjct: 121 DKQKMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIKKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+S  E E +++DQ INDRG  +D  L  +  +   + R +       LT   + +
Sbjct: 181 LSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIELTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + GL ++ L +   +  L + +       +V   R   S+S+V K +
Sbjct: 239 PNSPLQLKEWLNKK-GLEIDSLAKKDVESALKNTEGD---IKEVLELRQELSKSSVRKYD 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +      D R RG +QF GA+RTGR+SG +   QNL R +    +L + +       T 
Sbjct: 295 AMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETM 354

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +     P  I+S  +R+  IA EG + +++D + IEARVLAW+AGEQW L AFE GED+Y
Sbjct: 355 EILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENGEDIY 414

Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             T +R F V   +  V    R  GK+  LA GYQG   A + M     GL+ +      
Sbjct: 415 CRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMGGIEMGLSEDELQS-- 472

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                  +  +WR+ +  +  LW ++  
Sbjct: 473 ---------------------------------------IVDSWREANPNIVSLWWDIDS 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSYLNTTT 584
             ++ ++       R +     + +  +K  L + LPS R L Y    +G NR    +  
Sbjct: 494 VVKRVVKT------RTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGESIV 547

Query: 585 R-------QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                   +  +  +YGGK  ENIVQA++RDILAE MM   K G++IV+ +HDE+V E  
Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE-- 605

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +D  +   +  +M+  PSWA GL L A+G+ES+ Y+K
Sbjct: 606 -SDSSSIEEINQIMSLVPSWAPGLILDADGFESEFYKK 642


>gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 652

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/698 (31%), Positives = 332/698 (47%), Gaps = 73/698 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
             L ID ET S +DL KCG+ +Y E  D  ++LFA+ +DD P+ + D      +P+ + +
Sbjct: 3   KILSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTK 62

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L + DV   A+N+ FERT +   +N  +P  +W CT V A + GLP  L  V + L L 
Sbjct: 63  DLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLD 122

Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175
           +QK   GK LI  F   CK         RN P+H  + W+ F +YCK DV V R I K++
Sbjct: 123 AQKDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRKKI 182

Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           E  P+   E +LW LDQ IND G  +D  L     +      T+LD E + LT   + + 
Sbjct: 183 EKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTG--LDNP 240

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +L  WL  + GL +++         L    K      ++   R   S+++  K   
Sbjct: 241 NSTTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTKKYEA 299

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           +  AM SD R RG LQF GA+RT RW+G +   QNLP+       + + + H       +
Sbjct: 300 MERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEAIE 359

Query: 354 P---DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                P  ++S  +R+  I S+G + +V+D + IEARV+AW+AGE W++K F++   +Y 
Sbjct: 360 LLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKIYE 419

Query: 411 TTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVK 467
            + +  F+V   ++TK    R  GK+ ELALGY G   A + M +   GL+ +    LV 
Sbjct: 420 ASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLDADELPDLVT 479

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                     WR  + ++ +LW ++ +A
Sbjct: 480 A-----------------------------------------WRNSNPKIVKLWWDVDKA 498

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---------- 577
               +     +     R    +        L + LPSGR L Y                 
Sbjct: 499 AMTAVREHMPV-----RIQYGITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALTY 553

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             ++   +   R  TYG KL ENIVQAV+RD LA  M+    AGYDI + VHDE++ + P
Sbjct: 554 EGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDVP 613

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +TD    + +  +M+    WA GLPL+A+GYE++ Y+K
Sbjct: 614 NTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651


>gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
 gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
          Length = 662

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/718 (28%), Positives = 324/718 (45%), Gaps = 100/718 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M T+ ID ET S +DL KCG+ +Y       ++LF +  D  PV++ D      +P+ + 
Sbjct: 1   MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--------------------IPIHRWICTLV 98
           +AL +  V   A N+ FER  L                           +    W C++V
Sbjct: 61  DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAW 154
            A + GLP +LK VG  L+L+ QKM+EGK LI  F   C          RN P +    W
Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQKMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPGKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F +Y + DV V   I ++L   P+     + +++DQ INDRG  +D+ L      +  
Sbjct: 181 ATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDMDT 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R++L ++++++T   + +   ++++K WL    G+ ++ L +     +L +     P+
Sbjct: 241 RSRSELTEKMQAITN--LENPNSVQQMKQWLSD-NGMEVDSLGKKAVTALLKT---APPE 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +V   R + ++S+V K  T+  A+ SD R RG   F GA+RTGRW+G +   QNLP+ 
Sbjct: 295 LTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQN 354

Query: 333 SRSHEELDQIITHLPTSITS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                +  + +              D    +S  +R+  I  +G +  VAD + IEARV+
Sbjct: 355 HLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447
           AW AGE+WK  AF  GED+Y +T  R F+    +  V  + RA GK+ ELA GY G   A
Sbjct: 415 AWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACGYGGSTGA 474

Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            + M +   GL+ +                                             +
Sbjct: 475 LKAMGALEMGLSEDELPD-----------------------------------------I 493

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             +WR  + ++ + W ++ +A    ++N K     +      +        L + LPSGR
Sbjct: 494 VSSWRDANQQIVKFWWDVDKAVMAAVKNHKTTRLGR------LAFFWQAGMLFITLPSGR 547

Query: 567 SLVY--RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
           +L Y    VG NR      +Y     T++  R  +YG K  ENIVQA SRDIL   M   
Sbjct: 548 NLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDILCNSMKML 607

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                D+ + +HDE+V E       +   L   M   P+WA GL L+A+GY    Y+K
Sbjct: 608 RH--CDVCMHIHDELVIEAD--PRVSLDTLCEQMGRVPAWADGLVLRADGYVCDFYKK 661


>gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4]
 gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4]
          Length = 644

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 335/701 (47%), Gaps = 84/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +PQ + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L       +    W C+ V + + GLP +L  VG  L L
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+S  E E +++DQ INDRG  +D  L +   +  +    +  Q  + LT   +++
Sbjct: 181 LERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQKLTG--LAN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL    G++++ L++ +  ++L +    T +  QV + R   S+S+V K  
Sbjct: 239 PNSPLQLKDWLNQR-GMNIDSLSKASVAQLLQT---TTGKVHQVLSLRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII------THL 346
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  + +      T L
Sbjct: 295 AMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNTTAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+G    VAD + +EARV+AW++GE+W+ KAF   E
Sbjct: 355 SMLYDSVPD---VLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFANNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
           D+Y  + ++ F V   +  V  + R  GK+ ELALGY G   A + M +   GL      
Sbjct: 412 DIYCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATNLGLTEEELH 471

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            LV                                         + WR     + + W +
Sbjct: 472 SLV-----------------------------------------QMWRNASPHIVQFWWD 490

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           + +A ++ I++         +    +        + L L SGR L Y    +G NR    
Sbjct: 491 IDKAAKECIKS------HLPQATHGIKFIYRSGCMFLRLRSGRKLCYSKPKIGINRFGSE 544

Query: 582 TTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           + T       ++  R  TYG KL ENIVQA SRD+LAE M     AG  +V+ +HDE V 
Sbjct: 545 SITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDEAVI 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + P    ++   +  +MT  P WA GL L A G+ S  Y+K
Sbjct: 605 DAP--ANYSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643


>gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 662

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 318/718 (44%), Gaps = 100/718 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ++L+KCG+ KYAE  D  ++LF +  D   V + D      +PQ + 
Sbjct: 1   MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98
           +AL +  V   A N+ FER  L                           +    W C++V
Sbjct: 61  DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154
            A + GLP +L+ VG  L L  QK+ EGK+LI  F   C          RN P H  + W
Sbjct: 121 WAATMGLPLSLEGVGAVLGLEKQKLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPDKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F +Y   DV     I  RL   P+     + +++DQ INDRG  +D+ L     ++  
Sbjct: 181 EAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEMDT 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R++L   ++ +T   + +   ++++K WL    GL  + L +     ++ +     P+
Sbjct: 241 RSRSELTAAMKDMTA--LDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKT---APPE 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K  T+  A+  DGR RG   F G +RTGRW+G +   QNLP+ 
Sbjct: 295 LQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLPQN 354

Query: 333 SRSHEELDQIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +              D    +S  +R+  I  +G +  V+D + IEARV+
Sbjct: 355 HLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447
           AW AGE W+ K FETG D+Y  + ++ F+V   +  +    R  GK+ ELALGY G   A
Sbjct: 415 AWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSVGA 474

Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            + M +   GL+ +    LV                                        
Sbjct: 475 LKAMGAIEMGLSEDELPPLVDA-------------------------------------- 496

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              WRQ +  + + W ++ ++  + ++      +        +        L + LPSGR
Sbjct: 497 ---WRQTNPNIVKFWWDVDRSVMEAVKYKHTTSS------YGLTFSCRSGMLFITLPSGR 547

Query: 567 SLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
           +L Y    +G N+      +Y    +T++  +  +YG K  ENIVQA SRDIL   M   
Sbjct: 548 NLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDILCYAMKTL 607

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 IV+ +HDE+V E       +  +L   M   P WAKGL L+A+GY +  Y+K
Sbjct: 608 --RCCSIVMHIHDELVIEAD--PHMSLDVLCEQMGRTPPWAKGLKLRADGYVTPFYKK 661


>gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 324/701 (46%), Gaps = 84/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L + G  +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L       +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  FC   K         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +       +  Q  + LT   +++
Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTG--LAN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+  + L + +  ++L +    T    QV   R   S+S+V K  
Sbjct: 239 PNSPLQLKNWLH-QQGVETDSLAKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII------THL 346
            + +AM  DG + G LQF GA+RTGRW+G +   QNLPR S    E  + +      T L
Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+G    VAD + +EARV+AW++GE+W+  AF   E
Sbjct: 355 AMLYESVPD---VLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M +T  GL  +   
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDE-- 469

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                     + + WR     + + W +
Sbjct: 470 ---------------------------------------LPPLVQMWRNASPHIVQFWWD 490

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSY-- 579
           + +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G NR    
Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPQPKIGINRFGSE 544

Query: 580 -----LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                 N T ++  R  TYG KL ENIVQA SRD+LA  M     AG  +V+ +HDE V 
Sbjct: 545 SITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVI 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + P     +   +  +MT  P WA GL L A G+    Y+K
Sbjct: 605 DAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
 gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
          Length = 650

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/701 (33%), Positives = 330/701 (47%), Gaps = 78/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DLTK G+  YAE  D  ++LF + FDD PV+L D      +P  + 
Sbjct: 1   MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + ++   A N+ FERT +   FN  +P  +W CT V A + GLP  L  V + L L
Sbjct: 61  NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK   GK LI  F   CK         RN P H  + W  F  YCK DV V R+I K 
Sbjct: 121 KQQKDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIRKT 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+   E +LW LDQ IND G  VD  L           + KL  +   LT   + +
Sbjct: 181 LERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLTG--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            + + +LK WL    GL +E L + +   +L   +  T    Q+   R   ++++V K  
Sbjct: 239 PKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTESST--VKQMLELRQEMAKTSVKKYL 296

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +  A   DGR+RG LQF GA+RTGRW+G +   QNLPR S    +LDQ    L      
Sbjct: 297 AMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIK--DLDQARQLLKAGDYE 354

Query: 353 DPDPL-----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             + L      ++S  +R+  +  EG + +VAD + IEARV+AW+A E+W++  F T   
Sbjct: 355 MLELLFESVPTVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGK 414

Query: 408 LYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + +  F+V   ++TK    R  GKV ELALGYQGG  A   M              
Sbjct: 415 IYEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG------------- 461

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A+++         + K WRQ    + + W +  
Sbjct: 462 ---------------------------ALKEGLTEEELPGLVKLWRQSSPNIVKFWYDTE 494

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN------- 576
            A  + ++    +          ++   +   L + LPSGR L Y    + NN       
Sbjct: 495 AAAIKAVKEKTTVELH-----HGIHFIYESGILFIRLPSGRRLAYIKPRIQNNPRLDKPA 549

Query: 577 RSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
            +Y      T+Q  R YTYGGKL ENIVQAV+RD LAE ++    AGY  V+ VHDE V 
Sbjct: 550 LTYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVMHVHDESVM 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P     +      +M     WA GLP++A+G+ES  Y+K
Sbjct: 610 EMPHGV-GSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649


>gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26]
 gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55]
 gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34]
 gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79]
 gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291]
 gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58]
 gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291]
          Length = 652

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 344/705 (48%), Gaps = 84/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G+ +Y +  +  ++LFA+ FD+  V++ D V+D  +P+ + 
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A N+ FERT +    N+++  + W CT++ A + GLP +L +V +ALK 
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V REI 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 173 KRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L     + +E +LWYLDQ IND G  VD  L     +       KL +E   +T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           ++     +LK WL  + G  +  LT+ +   +L          +++   R   S++++ K
Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDEN--VVRILELRKLMSKTSIKK 296

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A  +D R+RG LQF GA+RTGRW+G +   QNLP+      +L + +       
Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356

Query: 349 ----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                  S PD   ++S  +R+  I SEG + +V+D + IEARV+AW AGE+W+L  F +
Sbjct: 357 LIELLYDSVPD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNS 413

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + +  F V    + K    R  GK+ ELALGY G   A   M +   GL+   
Sbjct: 414 HGKIYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIKMGLDEEE 473

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV T                                         WR  +  +++ W
Sbjct: 474 LQPLVTT-----------------------------------------WRNANPNITKFW 492

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------- 573
            ++ +A ++ I++   +  +       +    +   L + LPSGR L Y           
Sbjct: 493 WDVDKAAKKAIKDRTIVKLQ-----HGIKFIYNPGVLFIELPSGRRLSYLRPKIEPHTTF 547

Query: 574 -GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
            G+  +Y  +  T++Q  R  TYG KL ENIVQA +RD L E M N T AGY IV+ VHD
Sbjct: 548 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+V +  D    +   +  +M    SWAKGLPLKA+GYE   Y+K
Sbjct: 608 ELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
          Length = 687

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/690 (37%), Positives = 383/690 (55%), Gaps = 26/690 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123

Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PHLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF       G DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+++     ++     + +  +  AC+ +K+ WR+ H    + W EL +    
Sbjct: 483 PRDVIREAKSWYNESVKHKSTFGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NNRSYL--NTTTR 585
            I   +     K      + +++D   L + LPSGR++ Y        N +Y+  N+ +R
Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSYSR 596

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E PDT++FN  
Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDK 656

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
 gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
          Length = 657

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/711 (29%), Positives = 322/711 (45%), Gaps = 91/711 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LFID ET S  DL K G+ +Y+E  D  V+LF +  DD  V + D      +P  + 
Sbjct: 1   MRELFIDIETYSGTDLGKSGVYRYSEAPDFEVLLFGYCADDDEVRVIDLASGEALPTEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD-------------IPIHRWICTLVLARSNGL 105
           +AL +  V   AHN+ FER  L                    +    W CT+V +   GL
Sbjct: 61  DALTDETVVKWAHNAQFERVCLSRWLERQGINLKALNGNSNFLNPASWRCTMVWSAYLGL 120

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYC 161
           P +L+          QK+ EGKELI  F   CK         RN P H  + W  + EY 
Sbjct: 121 PLSLEGAALVTGAEKQKLTEGKELIRYFSSPCKPTKSNGGRTRNLPVHAPDKWEKYKEYN 180

Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             DV     I KRL   P+   E + + LDQ INDRG C+D+ L     +     RT L 
Sbjct: 181 ARDVETEMAIMKRLSKFPVPEDEWKYYILDQEINDRGICLDMDLIREAIRCDRRSRTVLT 240

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           + +  +T   + +   + ++K W F E GL  E L +   + +L +  +      +V   
Sbjct: 241 EAVRDITD--LDNPNSVAQMKAW-FAENGLETETLGKAAVKELLKTAPESF---REVLAL 294

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++S+V K   +  A+ SDGR+RG LQF GA+RTGR++G +   QNLP+        
Sbjct: 295 RQDLAKSSVKKYTAMENAVCSDGRVRGLLQFYGANRTGRFAGRLIQVQNLPQNHLPDLVQ 354

Query: 340 DQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            + +         +        ++S+ +R+  +   G K +VAD + IEARV+AW+AGEQ
Sbjct: 355 ARQLVKSGDFDALEILYDSVPGVLSELIRTAFVPMPGYKFIVADFSAIEARVIAWLAGEQ 414

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS- 453
           W+ + F +   +Y  + ++ F V   ++TK    R  GK+ ELALGY G   A + M + 
Sbjct: 415 WRNEVFASHGKIYEASASQMFRVPIEEITKGSPLRQKGKIAELALGYGGSVGALKAMGAL 474

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             GL  +    LV                                           WR  
Sbjct: 475 DMGLAEDELQPLVTA-----------------------------------------WRAA 493

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  ++ LW ++ +A +  +    A           +  +     L + LPSGR L Y   
Sbjct: 494 NPNITRLWWDVDRAAKTAVREKTA------EQTHNILFEYRSGFLFITLPSGRKLAYVKP 547

Query: 574 GN--NRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
               NR   ++ T       ++  R  +YG K  ENIVQA+SRDIL   M   +  G+ I
Sbjct: 548 RIEANRFGSDSITYEGVGASKKWERIESYGPKFVENIVQAISRDILCYAMQRLSSMGFSI 607

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V+ +HDE+V ET  + + +  ++  +M+  P WA+GL L A+G+E + Y+K
Sbjct: 608 VMHIHDEVVIET--SCDVSPEIVCRIMSETPPWAEGLFLCADGFECQFYKK 656


>gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010]
          Length = 687

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/690 (38%), Positives = 382/690 (55%), Gaps = 26/690 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF       G DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+++     +    + + +  +  AC+ +K+ WR+ H    + W EL +    
Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585
            I   +     K      + +++D   L + LPSGR++ Y        N +Y+  N+ +R
Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  TYGGKL ENI QA +RDILA  M     AGY IVLTVHDE++ E PDT++FN  
Sbjct: 597 KWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDK 656

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  L++++P WA  +PL A G+E+  Y+K
Sbjct: 657 ALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 646

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 203/702 (28%), Positives = 313/702 (44%), Gaps = 84/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L ID ET S  +L K G+ +Y E  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            AL +  V   A N+ FER  L     L     I    W C++V A + GLP +L+ VG 
Sbjct: 61  TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            LKL  QK+ EGK+LI  F   C          RN   H  + W  F +Y   D+     
Sbjct: 121 VLKLDKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETEMS 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++L   P+     + ++LDQ INDRG  +D+ L      +    R++L   ++ LT  
Sbjct: 181 IQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL  + G+  + L +     +L +            + R + ++S+V
Sbjct: 239 ELDNPNSVQQMKQWL-ADNGMETDTLGKKIVAELLKTAPLDLADV---LSLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   +  A+ +DGR RG  QF GA+RTGRW+G +   QNLP+         + +     
Sbjct: 295 RKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLEDLAEARALVRFGD 354

Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
               +    D    +S  +R+  +   G +L+V+D + IEARV+AWMAGE+W+   F  G
Sbjct: 355 FDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQDVFAKG 414

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
            D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A + M +   GL  +  
Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLEEDEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             LV                                           WRQ +  + + W 
Sbjct: 475 PQLVDA-----------------------------------------WRQANPCIVKFWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR--- 577
           ++ +A  + +        ++      +        L + LPSGR L Y    +G N+   
Sbjct: 494 DVDKAAMEAVRY------KRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIGENKFGG 547

Query: 578 ---SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
              +Y     T++  R  +YG K  ENIVQA +RDIL   M         IV+ VHDEIV
Sbjct: 548 QCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQTLQH--CSIVMHVHDEIV 605

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E       +   +   M   PSWAKGL L+A+GYE+  Y+K
Sbjct: 606 IEAD--PRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645


>gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378]
          Length = 684

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 208/701 (29%), Positives = 325/701 (46%), Gaps = 82/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L K G+ +Y  A+D  VILF +  D   V++ D +    +P+ + 
Sbjct: 39  MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
           +AL +  +T  A N+ FER  L           +    W C++V +   GL  +L+ VG 
Sbjct: 99  DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  F   C          RN      + W+ F  Y K DV    +
Sbjct: 159 VLGLEKQKLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEAEIQ 218

Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I +RL   P+     + ++LDQ INDRG  VD+        + D+   KL   ++ +T  
Sbjct: 219 IQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQITN- 277

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K+WL  E GL +E L +          K+   +  +V + R + ++S+V
Sbjct: 278 -LDNPNSVQQMKSWLC-ENGLEMETLGKKAVA---EKLKETDGELNEVLSLRQQLAKSSV 332

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   +  A+ SD R RG  QF GA+RTGR++G +   QNLP+      +  + I     
Sbjct: 333 KKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRNGD 392

Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             T +    D    +S  +R+  +   G K +VAD + IEARVL+W+AGE W+ K F +G
Sbjct: 393 VETLEMLYEDIPDTLSQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWRTKVFASG 452

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A + M            
Sbjct: 453 GDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG----------- 501

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A+E        + +  AWR  +  +++ W +
Sbjct: 502 -----------------------------ALEMGLEEEELKPLVNAWRMSNPNITQFWWD 532

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           + +A +Q ++  K+      ++   +        L ++LPSGR L Y    +G N+    
Sbjct: 533 VDRAAKQCVKENKS------QETHSIEFHCFSGMLFIVLPSGRRLAYVKPRIGENQFGGE 586

Query: 582 TT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           +        T++  R  +YG K  ENIVQA+SRDIL   M +     Y IV  VHDE++ 
Sbjct: 587 SVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSLRH--YRIVAHVHDEVII 644

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ET    + + + +   M+  P WAKGL L A+GYE   Y+K
Sbjct: 645 ET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683


>gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
 gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
          Length = 649

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/701 (29%), Positives = 319/701 (45%), Gaps = 82/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + TL  D ET S ++L KCG+ +Y  A+D  ++LFA+  D   V++ D      +P ++ 
Sbjct: 4   IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+  V   AHN+ FER              I    W CT+  A   GLP +L  VG 
Sbjct: 64  SALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGA 123

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTRE 170
            L L  QKM EGK+LI  FC             RN P +  E W  F  Y   DV    E
Sbjct: 124 VLGLGKQKMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAEME 183

Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++L   P+     + ++L + IND G  VD+        + ++  TKL  +++ +T  
Sbjct: 184 IEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEIT-- 241

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL    GL  + L +     +L   K       +V   R + ++S+V
Sbjct: 242 ELDNPNSVQQMKDWLSD-NGLETDTLGKKAVAELL---KDAPEHLAEVLKLRQQLAKSSV 297

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   +  A+ SDGR+RG   FLGA+RTGR+S  +   QNLP+      +  + I     
Sbjct: 298 KKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNGD 357

Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           S   +    D    +S  +R+  +  EG K +VAD + IEARVL+W+AGEQW+ + F  G
Sbjct: 358 SEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFANG 417

Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A + M            
Sbjct: 418 GDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMG----------- 466

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A+E        + +  AWR  +  + + W +
Sbjct: 467 -----------------------------ALEMGLEEEELKPLVNAWRASNPNIVKFWWD 497

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           + +  ++ I+  K+      ++V  +        L ++LPSGR L Y   ++G N     
Sbjct: 498 VDREVKKCIKEKKS------QEVQNIKFHYMSGMLFIVLPSGRKLAYVKPNIGENIFGGE 551

Query: 582 TT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           +        T++  R  +YG K  ENIVQA+SRDIL   M     +   IV  VHDE++ 
Sbjct: 552 SVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMKTL--STCSIVAHVHDEVII 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E   +   +  M+   M   P WAKGL L A+GYE   Y+K
Sbjct: 610 EADQS--LSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648


>gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
 gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
          Length = 661

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 204/716 (28%), Positives = 313/716 (43%), Gaps = 98/716 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S ID++KCG  KYAE  +  ++LF    D+ PV ++D      +P  + 
Sbjct: 2   MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100
            AL + ++   A N+ FER  L        P                     W CT++ +
Sbjct: 62  AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRL 156
              GLP +L+ VG  LKL  QKM+EGK+LI  FC   K         RN P H  + W  
Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQKMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKWET 181

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F  Y + DV V   I +RL   P+       +++DQ IND G  +D+ +        +  
Sbjct: 182 FKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVENAIAFDERS 241

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           ++ L   ++++T   + +   + ++K WL    G+  E L +     ++        +A 
Sbjct: 242 KSALITAMKNITN--LDNPNSVVQMKQWLSD-NGVETESLGKKEVAGLIKETDGDISKA- 297

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                R++ ++S+V K   +  A+  DGR  G  QF GA+R+GRW+G +   QNLP+   
Sbjct: 298 --LKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQNHM 355

Query: 335 SHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
           S     + +       T D    D    +S  +R+  IA  G K +V+D + IEARVLA 
Sbjct: 356 SDLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARPGYKFIVSDYSAIEARVLAH 415

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQ 449
           +AGE W+ K F  G+D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A +
Sbjct: 416 LAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAELALGYGGSVGALK 475

Query: 450 KMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            M +   GL       LV +                                        
Sbjct: 476 SMGALEMGLTEEELQPLVDS---------------------------------------- 495

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            WR  +  ++  W  +  A +  I+           +V  ++       L++  PSGR L
Sbjct: 496 -WRSSNPMITAFWWNVDNAIKTAIK------MHIPTEVNGIHFCYKSGMLLIKRPSGRVL 548

Query: 569 VY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            Y    +G NR    +        T++  R  +YG K  ENIVQAVSRDIL   M     
Sbjct: 549 SYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSRDILCNAMKTLRH 608

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               IV  VHDE++ E   +   + + +   M  +  W  G+ L+A+GYE+  Y+K
Sbjct: 609 --CFIVGHVHDELIIEC--SSGVDLNEICKQMGRSLDWMPGILLRADGYETNFYKK 660


>gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
 gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
          Length = 644

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 329/701 (46%), Gaps = 84/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L    +  +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT   +++
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKKLTG--LAN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+  + L++ +  ++L +    T    QV   R   S+S++ K  
Sbjct: 239 PNSPLQLKDWLH-QQGIKTDSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSIKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHL 346
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  +       +  L
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   E
Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M +   GL  +   
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDE-- 469

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                     + + WR     + + W +
Sbjct: 470 ---------------------------------------LPPLVQMWRNASPHIVQFWWD 490

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY-- 579
           + +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G NR    
Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPQPKIGINRFGSE 544

Query: 580 -----LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                 N T ++  R  TYG KL ENIVQA SRD+LA  M     AG  +V+ +HDE V 
Sbjct: 545 SITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVI 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + P     +   +  +MT  P WA GL L A G+    Y+K
Sbjct: 605 DAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
          Length = 655

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/706 (33%), Positives = 337/706 (47%), Gaps = 83/706 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ID+   G  KY E  D  ++LFA+ F+D PV++ D      +PQ + 
Sbjct: 1   MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +AL + DV   A N+ FER+ +K    +L  P  +W CT++ A + GLPS+L  VG+ALK
Sbjct: 61  DALYDPDVIKTAFNANFERSAIKFGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKALK 120

Query: 118 L--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREI 171
           L    QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V REI
Sbjct: 121 LEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVEREI 180

Query: 172 FKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              L      ++EQ+LW LDQ INDRG   D+ L     +       +L +    LT   
Sbjct: 181 RNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG-- 238

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAV 288
           + +     ++K W+    G  ++ LT+T+   ++   K L   + I++   R   +++++
Sbjct: 239 LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAKTSI 298

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K +T+  A   DGR+RG LQF GA+RTGRW+G +   QNLP+      +  +       
Sbjct: 299 KKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGK 358

Query: 349 ------SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                    S PD L   S  +R+  I  EG + +V+D + IEARV+AW AGEQW+L  F
Sbjct: 359 FEEVEFLFDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVF 415

Query: 403 ETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            T   +Y  + ++ F V    + K  + R  GK+ ELALGY G   A   M     +   
Sbjct: 416 STHGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEE 475

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               LVK+                                         WR  +  +++ 
Sbjct: 476 ELPGLVKS-----------------------------------------WRNANPNITKF 494

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV------- 573
           W ++ +A ++ I     +  +       +    D   L + LPSGR L Y          
Sbjct: 495 WWDVDKAAKKAIRERTTVNLQ-----YGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHET 549

Query: 574 --GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
             G+  +Y  +  T++Q  R  TYG KL ENIVQA SRD L E M    K GYDIV+ VH
Sbjct: 550 FSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYDIVMHVH 609

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE+V + P  D      +  LM     WA GLPLKA+GYE   Y K
Sbjct: 610 DEVVLDIPK-DRATVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654


>gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 687

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/690 (38%), Positives = 382/690 (55%), Gaps = 26/690 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF       G DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+++     +    + + +  +  AC+ +K+ WR+ H    + W EL +    
Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585
            I   +     K      + +++D   L + LPSGR++ Y        N +Y+  N+ +R
Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  TYGGKL ENI QA +RDILA  M     AGY IVLTVHDE++ E PDT++FN  
Sbjct: 597 KWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDK 656

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  L++++P WA  +PL A G+E+  Y+K
Sbjct: 657 ALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932]
 gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196]
 gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196]
          Length = 652

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/705 (32%), Positives = 343/705 (48%), Gaps = 84/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G+ +Y +  +  ++LFA+ FD+  V++ D V+D  +P+ + 
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A N+ FERT +    N+++  + W CT++ A + GLP +L +V +ALK 
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V REI 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 173 KRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L     + +E +LWYLDQ IND G  VD  L     +       KL +E   +T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           ++     +LK WL  + G  +  LT+ +   +L          +++   R   S++++ K
Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDEN--VVRILELRKLMSKTSIKK 296

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A  +D R+RG LQF GA+RTGRW+G +   QNLP+      +L + +       
Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356

Query: 349 ----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                  S PD   ++S  +R+  I SEG + +V+D + IEARV+AW+AGE+W+L  F +
Sbjct: 357 LIELLYDSVPD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNS 413

Query: 405 GEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ F +    + K  + R  GK+ EL+ GY G   A   M +   GL    
Sbjct: 414 HGKIYEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEE 473

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                       +  AWR  +  +++ W
Sbjct: 474 LQ-----------------------------------------PIVTAWRNANPNITKFW 492

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------- 573
            ++ +A ++ I++   +  +       +    +   L + LPS R L Y           
Sbjct: 493 WDVDKAAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTF 547

Query: 574 -GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
            G+  +Y  +  T++Q  R  TYG KL ENIVQA +RD L E M N T AGY IV+ VHD
Sbjct: 548 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+V +  D    +   +  +M    SWAKGLPLKA+GYE   Y+K
Sbjct: 608 ELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11]
 gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11]
 gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1]
          Length = 687

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/690 (37%), Positives = 381/690 (55%), Gaps = 26/690 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 5   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF       G DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+++     +      + +  +  AC+ +K+ WR+ H    + W EL +    
Sbjct: 483 PRDVIREAKSWYNESVKRKSTFGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585
            I   +     K      + +++D   L + LPSGR++ Y        N +Y+  N+ +R
Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E PDT++FN  
Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDK 656

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171]
 gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171]
          Length = 687

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/690 (37%), Positives = 382/690 (55%), Gaps = 26/690 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF       G DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+++     +    + + +  +  AC+ +K+ WR+ H    + W EL +    
Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585
            I   +     K      + +++D   L + LPSGR++ Y        N +Y+  N+ +R
Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  TYGGKL ENI QA +RDILA  M     AGY IVLTVH+E++ E PDT++FN  
Sbjct: 597 KWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFNDK 656

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  L++++P WA  +PL A G+E+  Y+K
Sbjct: 657 ALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605]
 gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605]
          Length = 687

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/690 (37%), Positives = 383/690 (55%), Gaps = 26/690 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+ +
Sbjct: 5   LWGDLETYCDIPINN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI  FCK         R     H E WR F  Y   D+   RE+ KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPKWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C+IA  GKK+VV+DL+ IE R+LAW+AGE+WKL AF       G DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+++     +    + + +  +  AC+ +K+ WR+ H    + W EL +    
Sbjct: 483 PRDVIREAKSWYGESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585
            I   +     K      + +++D   L + LPSGR++ Y        N +Y+  N+ +R
Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E+PDT++FN  
Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDK 656

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718]
 gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718]
          Length = 687

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/690 (38%), Positives = 381/690 (55%), Gaps = 26/690 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 5   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF       G DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+++     +    + + +  +  AC+ +K+ WR+ H    + W EL      
Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELECTVRT 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585
            I   +     K      + +++D   L + LPSGR++ Y        N +Y+  N+ +R
Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSR 596

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E+PDT++FN  
Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDK 656

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4]
          Length = 649

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/700 (33%), Positives = 347/700 (49%), Gaps = 77/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+  Y+E  D  ++LFA+  DD  VE+ D      +P  + 
Sbjct: 1   MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +A+ +  V   A+N+ FERT L   F + +P  +W CT V A   GLP  L  V + LKL
Sbjct: 61  KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKR 174
             QKM+EGK LI  F   CK         RN P H  A W  F +YCK DV V REI K+
Sbjct: 121 QGQKMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIRKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  PL + EQELW LDQ IND G  +D  L +   +     + +L +E   LT   + +
Sbjct: 181 LEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEAVRLTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL L+ GL ++ L +   + ++S  +   P+  ++   R   S+++V K  
Sbjct: 239 PNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVEN--PEVKRLLELRRAMSKTSVKKYE 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349
            +  ++ SD R+RG LQF GASRTGRW+G +    NLPR S    ++ + +         
Sbjct: 296 AMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEAL 355

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  I S+G + VVAD + IEARV+AW+AGE+W++  F++   +Y
Sbjct: 356 EVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSHGKIY 415

Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + A+ F V    + K    R  GK+ ELALGY G   A  +M +   GL  +    LV
Sbjct: 416 EASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMGALEMGLTEDELPELV 475

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                     AWR+ + ++ +LW  +  
Sbjct: 476 -----------------------------------------SAWREANPKIVKLWWGIEA 494

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------- 577
           A  + ++    +     +    +     K  L + LPSGRSL Y    +G +        
Sbjct: 495 AAIKAVKEKAVV-----KMQHGLTFHYTKGILFITLPSGRSLAYVRPKIGIDERFGKEQL 549

Query: 578 SYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
           +Y  T   ++Q  R  TYGGKLTENI+QA++RD LA  M+   +AGY I   VHDE++ +
Sbjct: 550 TYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDEVILD 609

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P     +   + ++M  +  WA GLPL A+ +E+  Y+K
Sbjct: 610 VPIAT-GSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648


>gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 329/701 (46%), Gaps = 84/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L+N ++   A N+ FER  L       +    W C+ V + + GLP +L+ +G  L L
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT   +++
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--LAN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+    L++ +  ++L +    T    QV   R   S+S+V K  
Sbjct: 239 PNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHL 346
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  +       +  L
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   E
Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M +T  GL  +   
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDE-- 469

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                     + + WR     + + W +
Sbjct: 470 ---------------------------------------LPPLVQMWRNASPHIVQFWWD 490

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           + +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G NR    
Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPQPKIGINRFGSE 544

Query: 582 TTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           + T       ++  R  TYG KL ENIVQA SRD+LAE M      G  +V+ +HDE V 
Sbjct: 545 SITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVI 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + P     +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 605 DAPFNR--SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643


>gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
 gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
          Length = 687

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/690 (38%), Positives = 381/690 (55%), Gaps = 26/690 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 5   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP AL  + E L +   K
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++   +
Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF       G DLY 
Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+++     +    + + +  +  AC+ +K+ WR+ H    + W EL      
Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELECTVRT 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585
            I   +     K      + +++D   L + LPSGR++ Y        N +Y+  N+ +R
Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSR 596

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E+PDT++FN  
Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDK 656

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK72]
          Length = 643

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/698 (31%), Positives = 328/698 (46%), Gaps = 79/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLTKCG+ +Y +     ++LFA+  D++  ++ D V    +P+ + 
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT VLA S GLP +L+ VG  L +
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EG  LI  F   CK      + +RN P+H  E W LF  YCK DV V + I  R
Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   PL   EQ  + LDQ INDRG  VD  L           + ++ +    L+   + +
Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  E G+ ++ L +    + L        + +++   R+  S+++V K  
Sbjct: 239 PNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADG---EVLEMLKLRLLMSKTSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +   + SDGR+ G LQF GA+RTGRW+G +   QNLP+       L + +       T 
Sbjct: 295 AIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQFETL 354

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           D    +   ++S+ +R+  +   G + +VAD A IEARVLAW++GE W+L+ FE G D+Y
Sbjct: 355 DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + +  F V   +       R  GK+ ELALGY G   A   M +   GL       LV
Sbjct: 415 CASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEELQPLV 474

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                      WR  +  +   W E+ +
Sbjct: 475 N-----------------------------------------QWRSANPHIVAFWWEIDK 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583
             +Q  E       R+ + +  + +      L + LPSGR L Y       +        
Sbjct: 494 VAKQVYET------REPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547

Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                 +++ TR  TYG KL ENIVQ ++RD+LA GM+   + G  IVL VHDE V E  
Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEV- 606

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              E + + +  L+ + P WA+GLPL+A+GY  + Y+K
Sbjct: 607 --REESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 643

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/698 (31%), Positives = 335/698 (47%), Gaps = 79/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S +DL K G+ KYAE  D  ++LFA+  DD  V++ D     ++P+ + 
Sbjct: 1   MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT++ +   GLP +L+ VGE LKL
Sbjct: 61  SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM EGK LI  F   CK      +  RN P+H    W +F EY + DV    EI K+
Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIKKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+   E E +++DQ INDRG  +D  L  +  +  ++ R +       LT   + +
Sbjct: 181 LSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIELTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + GL ++ L +   +  + + +       +V   R   S+S+V K +
Sbjct: 239 PNSPLQLKEWLNKK-GLEIDSLAKKDVESAIKNAEGD---IKEVLELRQELSKSSVRKYD 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +      + R RG +QF GA+RTGR+SG +   QNL R +    +L + +       T 
Sbjct: 295 AMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETM 354

Query: 353 DP---DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +     P  I+S  +R+  I  EG + +++D + IEARVLAW+A EQW L AFE GED+Y
Sbjct: 355 EFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDAFENGEDIY 414

Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             T +R F V   +  +    R  GK+  LA GYQG   A + M     GL+ +      
Sbjct: 415 CRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMGGIEMGLSEDELQS-- 472

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                  +  +WR+ +  +  LW ++  
Sbjct: 473 ---------------------------------------IVDSWREANPNIVSLWWDIDS 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSYLNTTT 584
             ++ ++       R + +   + +  +K  L + LPS R L Y    +G NR    +  
Sbjct: 494 VVKRVVKT------RSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESVV 547

Query: 585 R-------QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                   +  +  +YGGK  ENIVQA++RDILAE MM   K G++IV+ +HDE+V E  
Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE-- 605

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +D  +   +  +M+  P WA GL L A+G+ES+ Y+K
Sbjct: 606 -SDSSSIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642


>gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK1057]
          Length = 643

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/698 (31%), Positives = 328/698 (46%), Gaps = 79/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLTKCG+ +Y +     ++LFA+  D++  ++ D V    +P+ + 
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT VLA S GLP +L+ VG  L +
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EG  LI  F   CK      + +RN P+H  E W LF  YCK DV V + I  R
Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   PL   EQ  + LDQ INDRG  VD  L           + ++ +    L+   + +
Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  E G+ ++ L +    + L        + +++   R+  S+++V K  
Sbjct: 239 PNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADG---EVLEMLKLRLLMSKTSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +   + SDGR+ G LQF GA+RTGRW+G +   QNLP+       L + +       T 
Sbjct: 295 AIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQVETL 354

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           D    +   ++S+ +R+  +   G + +VAD A IEARVLAW++GE W+L+ FE G D+Y
Sbjct: 355 DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + +  F V   +       R  GK+ ELALGY G   A   M +   GL       LV
Sbjct: 415 CASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEELQPLV 474

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                      WR  +  +   W E+ +
Sbjct: 475 N-----------------------------------------QWRSANPHIVAFWWEIDK 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583
             +Q  E       R+ + +  + +      L + LPSGR L Y       +        
Sbjct: 494 VAKQVYET------REPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547

Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                 +++ TR  TYG KL ENIVQ ++RD+LA GM+   + G  IVL VHDE V E  
Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEV- 606

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              E + + +  L+ + P WA+GLPL+A+GY  + Y+K
Sbjct: 607 --REESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 650

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/703 (31%), Positives = 317/703 (45%), Gaps = 82/703 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET   +D+ K G  KY E     ++LFA+ F+D PVE+ D      +PQ +K
Sbjct: 1   MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL N  +   A N+ FE   LK      I    W CT+V +   GLP +L  VG+ L+ 
Sbjct: 61  TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120

Query: 119 --SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  F   CK         RN P H  E W +F +Y K DV V R I 
Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVEVERAIR 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P +  EQ LW LDQ INDRG   D+ L     +  +    +L +E   LT   +
Sbjct: 181 NKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATELTG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           S+     +LK W+    G  ++ LT+ +   ++  +K    +  ++   R   +++++ K
Sbjct: 239 SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKESKD--EKVKKILELRQLMAKTSIKK 296

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
             T+  A   DGR+RG LQF GA+RTGRW+G +   QNLP+      +  +         
Sbjct: 297 YETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDDARNFIRTGQFD 356

Query: 349 ----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                  S PD L   S  +R+  I  EG + +VAD + IEARV+AW AGEQW+L  F  
Sbjct: 357 KVEFLYDSIPDTL---SQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQWRLDVFNN 413

Query: 405 GEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             D+Y  + ++ F V   +  +    R  GK+ ELALGY G   A   M     +  +  
Sbjct: 414 NGDIYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKKNIPEDE- 472

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                      + K WR     +++ W 
Sbjct: 473 ----------------------------------------LPGLVKDWRDASPHITKFWW 492

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN------ 576
           ++ +A ++ I     ++ +       +    D   L + LPSGR L Y            
Sbjct: 493 DVDKAAKKAIRERTTVVLQ-----FGLKFIYDPGVLFIQLPSGRKLAYIRPKIEPGPYDK 547

Query: 577 --RSYLN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
              +Y     T++Q T   TYG K+ ENIVQA +RD L   M      G+ IV+ VHDE+
Sbjct: 548 PIITYEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGFHIVMHVHDEL 607

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +C+ P   +     +  +      WA GLPLKA+GYE   Y K
Sbjct: 608 ICDVPKG-KGTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649


>gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 644

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/701 (29%), Positives = 327/701 (46%), Gaps = 84/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L    +  +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT   +++
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--LAN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  +  +    L++ +  ++L +    T    QV   R   S+S++ K  
Sbjct: 239 PNSPLQLKDWL-QQQDIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSIKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHL 346
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  +       +  L
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   E
Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M +   GL  +   
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDE-- 469

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                     + + WR     + + W +
Sbjct: 470 ---------------------------------------LPPLVQMWRNASPHIVQFWWD 490

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY-- 579
           + +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G NR    
Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPQPKIGINRFGSE 544

Query: 580 -----LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                 N T ++  R  TYG KL ENIVQA SRD+LAE M         +V+ +HDE V 
Sbjct: 545 SITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAVI 604

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + P     +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 605 DAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643


>gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255]
          Length = 652

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/705 (32%), Positives = 341/705 (48%), Gaps = 84/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G+ +Y +  +  ++LFA+ FD+  V++ D V+D  +P+ + 
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A N+ FERT +    N+++  + W CT++ A + GLP +L +V +ALK 
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V REI 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 173 KRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L     + +E +LWYLDQ IND G  VD  L     +       KL +E   +T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           ++     +LK WL  +    +  LT+ +   +L          ++    R   S++++ K
Sbjct: 239 NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDEN--VVRTLELRKLMSKTSIKK 296

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A  +D R+RG LQF GA+RTGRW+G +   QNLP+      +L + +       
Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356

Query: 349 ----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                  S PD   ++S  +R+  I SEG + +V+D + IEARV+AW+AGE+W+L  F +
Sbjct: 357 LIELLYDSVPD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNS 413

Query: 405 GEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ F V    + K  + R  GK+ EL+ GY G   A   M +   GL    
Sbjct: 414 HGKIYEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEE 473

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                       +  AWR  +  +++ W
Sbjct: 474 LQ-----------------------------------------PIVTAWRNANPNITKFW 492

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------- 573
            ++ +A ++ I++   +  +       +    +   L + LPS R L Y           
Sbjct: 493 WDVDKAAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTF 547

Query: 574 -GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
            G+  +Y  +  T++Q  R  TYG KL ENIVQA +RD L E M N T AGY IV+ VHD
Sbjct: 548 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+V +  D    +   +  +M    SWAKGLPLKA+GYE   Y+K
Sbjct: 608 ELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 663

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 207/714 (28%), Positives = 318/714 (44%), Gaps = 98/714 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           TL ID ET S IDL KCG+ KY+E  D  V+LFA+  D   V + D  +   +P  + +A
Sbjct: 6   TLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEILQA 65

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLARS 102
           L +  V   A N+ FER  L      + P                     W C+++ +  
Sbjct: 66  LVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWSAY 125

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFG 158
            GLP +L+ VG  L L  QK++EGK+LI  FCK            RN P H  + W LF 
Sbjct: 126 MGLPLSLEGVGAVLGLEEQKLKEGKDLIRYFCKPCAATKVNGGRTRNLPEHAPDKWELFK 185

Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            Y K DV V   I K+L   P+     E ++LDQ INDRG  +D+ +     +I  + + 
Sbjct: 186 AYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAIRIDAISKA 245

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L   ++ LT   + +   + ++K WL  + G+  + L +     +L +          V
Sbjct: 246 TLMATMQDLTD--LENPNSVAQMKGWLAAK-GVDTDSLDKKAVIELLKTVPTD---VADV 299

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R + ++S+V K   +  A+  DGR RG  QF GA+R+GRW+G +   QNLP+     
Sbjct: 300 LTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQNLPQNHMED 359

Query: 337 EELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            ++ + I         +    +   ++S+ +R+  I  EG K  VAD + IEARV+A +A
Sbjct: 360 LDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAIEARVIAHLA 419

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKM 451
            E+W++K F    D+Y  + +  F V   +  ++   R  GK+ ELALGY G   A   M
Sbjct: 420 KERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGSVGALTSM 479

Query: 452 AS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            +   GL       LV                                           W
Sbjct: 480 GALDMGLAEEELQPLVDA-----------------------------------------W 498

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R  +  + + W ++  A ++ I+   A           +        L ++LPSGR L Y
Sbjct: 499 RAANPNIVQFWWDVDNAVKRAIKERTA------TKTHGIRFIYKSAMLFIVLPSGRRLAY 552

Query: 571 --RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
               +G N+    + T       ++  R  +YG K  ENIVQA+SRDIL   +   +   
Sbjct: 553 VKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYALRTLSH-- 610

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             IV  VHDE++ E     + +   +   M   P W +GL L+A+GYE++ Y+K
Sbjct: 611 CFIVGHVHDEVIIEC--RQDASLEAICEQMGRVPEWIEGLLLRADGYETQFYKK 662


>gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
 gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 198/716 (27%), Positives = 320/716 (44%), Gaps = 98/716 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + T+ ID ET S +DL KCG+ KY  ++   ++LF +  D   V + D      +P  + 
Sbjct: 4   IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100
            AL + ++T  A N+ FER  L        P                     W C++V +
Sbjct: 64  MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRL 156
              GLP  L   G  L L  QK+ EGKELI  F   CK         RN P H    W +
Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQKLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKWEM 183

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F +Y K DV V   I  +L   P+ +   E ++LDQ INDRG  +D+ +        +  
Sbjct: 184 FKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFDEKS 243

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           +  L  +++ +T   + +   ++++K WL    GL ++ L +     VL++  +      
Sbjct: 244 KAVLADKMQEMTG--LENPNSVQQMKQWLSC-NGLEMDSLGKKEVAAVLNTAPEP---LK 297

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            V   R + ++S+V K   +  A+ SDGR RG   F GA+R+GRW+G +   QNLP+   
Sbjct: 298 TVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQNHM 357

Query: 335 SHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
           S  E  + +         +    D    +S  +R+  +  +G + +V+D + IEARVL+ 
Sbjct: 358 SDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDFSAIEARVLSH 417

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQ 449
           +AGE+W+   F +G D+Y  + ++ F V   +  V    R  GK+ ELALGY G   A +
Sbjct: 418 LAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALK 477

Query: 450 KMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            M +   GL  +    LV                                          
Sbjct: 478 SMGALDMGLEEDELKPLVD----------------------------------------- 496

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            WR+ +  + +LW ++ +A ++ ++       R+   +  +        L + LPSGR L
Sbjct: 497 MWREANPNIVKLWWDVDRAVKKAVKQ------REPSSIGSITFSYKSGMLFIGLPSGRCL 550

Query: 569 VY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            Y    +G N+    +        T++  R  +YG K  ENIVQA+SRDIL   +   + 
Sbjct: 551 SYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIRTLSH 610

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               I   VHDE++ E   +   +  ++   M   P W +G+ L+A+GYE++ Y+K
Sbjct: 611 --CFICGHVHDELIIEC--SKSVSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662


>gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 662

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/721 (29%), Positives = 313/721 (43%), Gaps = 106/721 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M T+ ID ET S ++L KCG+ KYAE     ++LF +  D   V++ D      +P  + 
Sbjct: 1   MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98
           +AL +  VT  A N+ FER  L                           +    W C+++
Sbjct: 61  DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154
            +   GLP +L+  G  LKL SQKM+EGK+LI  F   CK         RN P H  + W
Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQKMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPDKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            LF  Y K DV V   I +RL+  P+     + ++LDQ INDRG  +D  LA     I  
Sbjct: 181 TLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVIDA 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R  L   L+  T   + +   + ++  WL  + G+  + L +   Q +L + ++    
Sbjct: 241 RSRDSLMAVLKGKTG--LENPNSVIQMIGWL-EQHGMKTDSLGKKQVQELLKTAEEP--- 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K   +      D R RG  QF GA+RTGR++G     QNLP+ 
Sbjct: 295 LRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354

Query: 333 SRSH-----EELDQI-ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
                    E + Q     L     S PD   ++S  +R+  +  +G K VV+D + IEA
Sbjct: 355 HLPDLAEARELVRQGNYEALELLYDSIPD---VLSQLIRTAFVPRKGMKFVVSDFSAIEA 411

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGG 444
           RVL+W+AGE W+L  F    D+Y  + +  F V   +  V    R  GK+ ELALGY G 
Sbjct: 412 RVLSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGS 471

Query: 445 AKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             A + M +   GL  N    LV++                                   
Sbjct: 472 TGALKAMGALDMGLTENELYPLVQS----------------------------------- 496

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                 WR  +  + + W ++    +  I+    + A        +        L + LP
Sbjct: 497 ------WRSANPHIVDFWWQVDATVKTAIKEQIPMRA------GCIRFLCQSGMLFIQLP 544

Query: 564 SGRSLVY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
           SGR L Y    +G NR    +        T++  R  +YG K  ENIVQ +SRDIL   M
Sbjct: 545 SGRRLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCYAM 604

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                    IV  VHDE++ E       +   +   M   P WA+GL L+A+GYE + Y+
Sbjct: 605 QTL--RCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADGYECEFYQ 660

Query: 675 K 675
           K
Sbjct: 661 K 661


>gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           LL3]
          Length = 648

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/699 (33%), Positives = 333/699 (47%), Gaps = 76/699 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+  Y E  D  ++LFA+ FD+ P+++ D      +P  + 
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL ++ V   A+N+ FERT +   FN  +P  +W CT V A + GLP  L  V +ALKL
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           S QK +EGK LI  F   CK         RN P H  + W  F  YC  DV V R I  R
Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIKNR 180

Query: 175 LEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +    L   EQELW LDQ INDRG  +D  L        +  +  L  E + LT   + +
Sbjct: 181 ISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--LPN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LKTWL  + GL +  L +   + ++      +    +V   R   ++++V K  
Sbjct: 239 PNSTAQLKTWL-EDKGLSVSSLAKDKIEELIEKTDDAS--VHRVLRLRQEMAKTSVKKYL 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + +A+  D R+RG LQF GASRTGRW+G +   QNLP+   +  +  + +         
Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAI 355

Query: 353 DPDPLQ---IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +    Q   ++S  VR+  I SEG +  V+D + IEARV+AW+AGE W+L  F T   +Y
Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIY 415

Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + A+ F V    +TK    R  GKV ELALGYQGG  A  +M + T GL+ +    LV
Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELPGLV 475

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           K                                          WR  + ++ + W ++  
Sbjct: 476 KA-----------------------------------------WRTANKKIVQFWYDVEA 494

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--------- 577
           A  + ++  K +  +       +    +   L + LPSGR L Y                
Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549

Query: 578 SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           +Y     + +  R  TYGGKL ENIVQAV+RD LA  ++    AGY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVLDV 609

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P   +     +  +M     WAKGLPL A+G+ +  Y+K
Sbjct: 610 PRG-KNELDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK115]
          Length = 645

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/698 (31%), Positives = 326/698 (46%), Gaps = 77/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLTKCG+ +Y +     ++LFA+  D+   ++ D      +P+ + 
Sbjct: 1   MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FER  L       +    W CT V A S GLP +L+ VG  L +
Sbjct: 61  SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EG+ LI  F   C+      + +RN P+H  E W LF  YCK DV V + I KR
Sbjct: 121 EEQKMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIRKR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   PL   EQ L+ LDQ INDRG  VD  L           + ++ Q    L+   + +
Sbjct: 181 LSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSG--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL    G+ ++ L +    + L        + +++   R+  S+++V K  
Sbjct: 239 PNSVSQLKGWL-ENQGVFMDSLGKKDVAKQLKEVDG---EILEMLKLRLLMSKTSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +   + SD R+ G LQF GA+RTGRW+G +   QNLP+      +L + +         
Sbjct: 295 AMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQLKAL 354

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           D    +   ++S+ +R+  +   G + +VAD A IEARVLAW++GE W+L+ FE G D+Y
Sbjct: 355 DLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQGGDIY 414

Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + A  F V   +  V    R  GK+ ELALGY G   A + M +   GL+      LV
Sbjct: 415 CASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALDMGLDEEELQPLV 474

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                      WR  +  +   W  + +
Sbjct: 475 N-----------------------------------------QWRMANPHIVAFWWVIDK 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583
           A ++  E       R+ + V  + +        + LPSGR L Y       +        
Sbjct: 494 ASKEVYET------REPQKVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGKPGLT 547

Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                  ++ +R  TYG KL ENIVQ ++RD+LA GMM   K   DIVL VHDE V E  
Sbjct: 548 YEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIVLHVHDEAVVEVK 607

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +  E +   +  L  + P WA+GLPL+A+GY  + Y+K
Sbjct: 608 EG-EASVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644


>gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
          Length = 648

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/699 (33%), Positives = 331/699 (47%), Gaps = 76/699 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+  Y E  D  ++LFA+ FD+ P+++ D      +P  + 
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL ++ V   A+N+ FERT +   FN  +P  +W CT V A + GLP  L  V +ALKL
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           S QK +EGK LI  F   CK         RN P H  + W  F  YC  DV V R I  R
Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIKNR 180

Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +        EQELW LDQ INDRG  +D  L        +  +  L  E + LT   + +
Sbjct: 181 ISKFEPLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--LPN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + GL +  L +   + ++      +    +V   R   ++++V K  
Sbjct: 239 PNSTAQLKKWLEDK-GLSVSSLAKDKIEELIEKTDDAS--VHRVLRLRQEMAKTSVKKYL 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + +A+  D R+RG LQF GASRTGRW+G +   QNLP+   +  +  + +         
Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAI 355

Query: 353 DPDPLQ---IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +    Q   ++S  VR+  I SEG +  V+D + IEARV+AW+AGE W+L  F T   +Y
Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIY 415

Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + A+ F V    +TK    R  GKV ELALGYQGG  A  +M + T GL+ +    LV
Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELPGLV 475

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           K                                          WR  + ++ + W ++  
Sbjct: 476 KA-----------------------------------------WRTANKKIVQFWYDVEA 494

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--------- 577
           A  + ++  K +  +       +    +   L + LPSGR L Y                
Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549

Query: 578 SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           +Y     + +  R  TYGGKL ENIVQAV+RD LA  ++    AGY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETVLDV 609

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P   +     +  +M     WAKGLPL A+G+ +  Y+K
Sbjct: 610 PRG-KNELDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
 gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/693 (38%), Positives = 380/693 (54%), Gaps = 27/693 (3%)

Query: 1   MA-TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
           M  TL++D ET S   + K G   YAE V ++LFA+  +++ V++WD      +P  LK+
Sbjct: 1   MKNTLWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQ 59

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK-- 117
           AL + +  I AHNS+F+RT+L     + I + RW  T+V A ++GLP AL A+ E L   
Sbjct: 60  ALSDPNTIIYAHNSHFDRTMLNHS-GIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVP 118

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L   K +EGK LI  FCK         R     H E W+ F  Y   D+   RE+ KRL 
Sbjct: 119 LDKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLP 178

Query: 177 PLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             +    E E W+ DQ INDRG  +D+ LA    + V++E+ +L +  + LT   V ++ 
Sbjct: 179 SWNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAAT 238

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             + L   +    G+ L D+ ++T +R ++      P   ++   R+++S ++  K   L
Sbjct: 239 QRDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLP-LRELLAIRLQSSTTSTSKYKAL 297

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352
           +  ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP+     +D+ I  L        
Sbjct: 298 MNGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLI 357

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GED 407
             D +Q+ S  +R C++A EGKKLVV+DL+ IE R+LAW+AGE WK+ AF       G D
Sbjct: 358 YDDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGAD 417

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           LY   YAR+FN++P  V K  R IGKVMEL LGY GG  AF   A T  L+L+  A    
Sbjct: 418 LYKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAAL 477

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            N  P+   DA ++ +   E    + + +    T C+ +K+ WR  H      W EL   
Sbjct: 478 PNIPPKVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDT 536

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---RSYL--NT 582
               I +       ++     + +++DK  L ++LPSGR++ Y    N+    SY+  N 
Sbjct: 537 VRHAISSPGITFPCRK-----LKVRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNP 591

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            +R+  R  TYGGKL EN+ QA +RD+LA  M      GYDIVLTVHDE++ E PD   F
Sbjct: 592 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAF 651

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           N   L  L+ +NP WA  LPL A G+E+  YRK
Sbjct: 652 NHEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684


>gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
 gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
          Length = 651

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/706 (29%), Positives = 320/706 (45%), Gaps = 89/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   +DL K G+  YAED    ++L A   D+ PV ++D      +P  + 
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLPDQIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           +AL N  +   A N+ FER  L        P          + W C++V +   GLP +L
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  QK++EG ++I  FC   K         RN P+H  + W  F  Y K DV
Sbjct: 122 EGVGTVLKLKEQKLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKRDV 181

Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  +L   P+     E ++ DQ INDRG  +DV        I +  ++K+ +EL+
Sbjct: 182 EVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT   + +   + ++  WL  E G+    L +   + +L        +  +V   R +A
Sbjct: 242 ELTG--LENPNSVLQMIGWL-REHGVTTNSLDKKAVKELLKVVD---AKTTKVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +V  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +  + +
Sbjct: 296 AKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARDL 355

Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   +D        +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+   
Sbjct: 356 FKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           FE G+D+Y  + ++ F V   +     D R  GK+ ELA GY G   A + M +   GL+
Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMGLD 475

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 LV +                                         WRQ +  + 
Sbjct: 476 EQELQPLVDS-----------------------------------------WRQANPNIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573
             W ++ +A +  I+  K      + +   +  K  K  L + LPSGR L Y        
Sbjct: 495 LFWWDVDKAVKTAIKYQK------QTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGEN 548

Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
              G + +Y  T T ++  R  +YG K  ENI+QA+SRDILA  M       + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRIVGHVH 606

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DEI+ E   +   N   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
 gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
          Length = 640

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/698 (32%), Positives = 327/698 (46%), Gaps = 82/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET SP+ L K G+ KY    D  ++LF++  D   V   D      +P  + 
Sbjct: 1   MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL ++ VT  A+N+ FERT L A     +    W C++V A + GLP +LK VG+ L L
Sbjct: 61  DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE- 176
            +QKM+EGK+LI  FC  + +     R  P +    W+LF  Y   DV V   I ++L  
Sbjct: 121 DAQKMDEGKDLIKHFCVPDDNS---QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLAD 177

Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            P+     E + +DQ INDRG  +D  LA     I +  R +       LT   + +   
Sbjct: 178 FPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--LDNPAS 235

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
             +L+ WL  + G  +E + + +      +    T Q  +    R   SRS+V K   ++
Sbjct: 236 PLQLQEWLN-QHGCPIESMAKESVD---DALANATGQVREALELRQELSRSSVAKYRKMI 291

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP------TS 349
           +   +D R  G LQF GA+RTGRW+G +   QNLPR         + +            
Sbjct: 292 DVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEML 351

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            +S PD L   S  +R+  I S   + +VAD + IEARVLAW+AGE+  L AF+ GEDLY
Sbjct: 352 YSSVPDTL---SQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLY 408

Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             T +  F V   +  V  + R  GK+  LA GY G   A + M +   GL+ +      
Sbjct: 409 CATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLSEDELQ--- 465

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                  +  AWRQ +  + +LW+++  
Sbjct: 466 --------------------------------------PIVDAWRQANPNIVQLWHKVDN 487

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT 584
           A  + I  G+ +  R       +  +K    L + LPSGR L Y    +G NR    + T
Sbjct: 488 AATRAISTGRPLTLRN------LGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSIT 541

Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                  R+  +  TYGGKL ENIVQA +RD+LAE +     AG+ IV+ +HDE+V + P
Sbjct: 542 YWGQGVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDEP 601

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  + +  LM   P WA+GLP+ A GYE   Y+K
Sbjct: 602 INSGTTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639


>gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
 gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
          Length = 644

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 326/700 (46%), Gaps = 82/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L  CG+ +YA  E   ++LFA+  +D P ++ D      MP+ + 
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V   A N+ FER  +   F L +    W CT V A    LP +L+ VGEAL L
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             +KM EGK+LI  F   CK         RN P +  E W LF  YC  DV V ++I  +
Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+  +EQEL+ +DQ INDRG  VD  L         + +    +    ++   + +
Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  + G+ ++ L +   + ++   +    +  ++   R+  S+++V K  
Sbjct: 239 PNSVSQLKDWLNEK-GIEVDSLAKAAVEELVEKTEG---EVSEMMKLRLSMSKTSVKKYE 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---- 348
            +  ++  DGR+ G LQF GA+RTGRW+G +    NLP+      EL + I         
Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDLV 354

Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S P   +++S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F    
Sbjct: 355 ELLYDSTP---EVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAG 411

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  T ++ F++   ++TK    RA GKV  LA  Y G   A   M +   +       
Sbjct: 412 KIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEEELK- 470

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                    + ++WR  +  +   W E+
Sbjct: 471 ----------------------------------------GLVQSWRTANPHIVNYWYEI 490

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NN 576
             A +  ++       RK   V  V +      L + LPSGR L Y             +
Sbjct: 491 DGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSES 544

Query: 577 RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            SY    T R+ TR  +YG K  ENIVQA +RD+LAE M+   K G+DIV  +HDE+V E
Sbjct: 545 VSYEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLE 604

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P+    +   +  +M   P W +GLPLKA G+ES  Y+K
Sbjct: 605 VPEGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 655

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/706 (32%), Positives = 321/706 (45%), Gaps = 83/706 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TLF D ET SP+ L K G+  Y E  D  ++LF++  D  PVE+ D  +   MP  + 
Sbjct: 1   MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109
            AL + DV   AHN+ FER  L A  +           +   +W CT+V +   GLP +L
Sbjct: 61  AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPN-HREAWRLFGEYCKGDV 165
            A+   LKL  QK   G++LI +FC   T         RN P+     W  F +Y + DV
Sbjct: 121 DAIAAVLKLDVQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRRDV 180

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V + I  RL   P+   E + + LDQ IND G  +D  L      + +  R       +
Sbjct: 181 EVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT   + +     +LK WL    G  LE L +      L +    T    +V   R   
Sbjct: 241 KLTG--LDNPNSPIQLKQWLATR-GCELESLAKAEVDSALDT---ATGAVKEVLELRGDL 294

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +     SDGR RG +QF GA RTGR++G +   QNLPR      +  + +
Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTL 354

Query: 344 THLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                    +         +S  +R+  I S G + +VAD + IEARV+AW+AGE   L+
Sbjct: 355 VRTGNLDALELLYESVPDTLSQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGETSTLE 414

Query: 401 AFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           AF  G+DLY  T +R F V   +  V  + R  GK+  LA GY G   A + M       
Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG------ 468

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A+         + +  AWRQ +  + 
Sbjct: 469 ----------------------------------ALNMGLAEHELKPIVDAWRQANPHIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
            LW ++ +A    I + + I  R  R         +     + LPSGR L Y    +G N
Sbjct: 495 GLWADVEEAAIAAISSRQPIRLRNLR------FSVESGIFFIELPSGRRLAYVQPRLGEN 548

Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R           TT R+  +  TYGGKL ENIVQA++RD+L  GM    KAG+ IV+ VH
Sbjct: 549 RWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQIVMHVH 608

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DEIV + P+   F  +    LM++ P+WA+GLPL A+GYE   YRK
Sbjct: 609 DEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 674

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/714 (29%), Positives = 325/714 (45%), Gaps = 96/714 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L +D ET S ++L KCG+ KYAE  D  ++LF +  D   V++ D      +P+V+ 
Sbjct: 17  LENLSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 76

Query: 59  EALENTDVTIVAHNSYFERTVLKACF----------------NLDIPIHRWICTLVLARS 102
            AL +  VT  A N+ FER  L                     L +    W CT++ + +
Sbjct: 77  SALTDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSAT 136

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFG 158
            GLP +L+ VG  L L  QK+ EGK LI  FC             RNK  H  E W  F 
Sbjct: 137 LGLPMSLENVGIVLGLDKQKLTEGKNLIKYFCLPCNPTKVNGGRTRNKYFHDKEKWEQFK 196

Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            Y K DV V   I ++L   P+     + +YLDQ INDRG  +D     +  ++    +T
Sbjct: 197 SYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAIKLDLEVKT 256

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L  EL+ +T   + +   + ++++WL  + GL +E L +    + L +  K   +  +V
Sbjct: 257 HLMSELKRVTG--LENPNSVLQMRSWL-KKHGLEMESLGKKEVAKELKTVGK---ELAEV 310

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R + ++S+V K   +  A   D R RG  +F GA+RTGR++G +   QNLP+     
Sbjct: 311 LRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNLPQNHLPD 370

Query: 337 EELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               + +         +    D    +S  +R+  I   G K +VAD + IEARVLAW+A
Sbjct: 371 LAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGLKFIVADFSAIEARVLAWLA 430

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKM 451
           GE+W+++ F  G+D+Y ++ ++ F+V   +  V    R  GK+ ELALGY G   A + M
Sbjct: 431 GEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAM 490

Query: 452 AS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            +   GL  +    LV                                           W
Sbjct: 491 GALDMGLTEDELQPLVDA-----------------------------------------W 509

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R  +  V+ LW ++ +A +Q +    ++          +        LI+ LPS R L Y
Sbjct: 510 RSSNPMVTTLWWDVDRAVKQCVHEHVSV------RTHNIVFTYKSGFLIIKLPSKRCLYY 563

Query: 571 RDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
                      G + +Y    +T++  R  +YG K  ENI QA++RDIL   M    +  
Sbjct: 564 VKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILIYAMQTLKE-- 621

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           Y IV  VHDE + ET  +   +   +  LM   P WA+GL L+A+GYE + Y+K
Sbjct: 622 YRIVAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECEFYKK 673


>gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
 gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
          Length = 644

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/700 (30%), Positives = 330/700 (47%), Gaps = 82/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L  CG+ +YA  E   ++LFA+  +D P ++ D      +P  + 
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V   A+N+ FER  +   F L +    W CTLV A    LP +L+ VGEAL L
Sbjct: 61  EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             +KM EGK+LI  F   CK         RN P +  E W LF  YC  DV V ++I  +
Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIRNK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+  +EQ+L+ +DQ INDRG  VD  L         + +  + ++   ++   + +
Sbjct: 181 LAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  + G+ ++ L +   + ++ + +       ++   R+  S+++V K  
Sbjct: 239 PNSVSQLKDWLNEK-GIEVDSLAKAAVEELVENTQGD---VAEMMKLRLAMSKTSVKKYE 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---- 348
            +  ++  DGR+ G LQF GA+RTGRW+G +    NLP+      EL + +         
Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRYDLV 354

Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F    
Sbjct: 355 ELLYDSTPD---VLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAG 411

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  T ++ F++   ++TK    RA GKV  LA  Y G   A   M +   +       
Sbjct: 412 KIYEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGALNFVEEEELK- 470

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                    + ++WR  +  +   W E+
Sbjct: 471 ----------------------------------------GLVQSWRTANPHIVNYWYEI 490

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NN 576
             A +  ++       RK   V +V +      L + LPSGR L Y             +
Sbjct: 491 DGAVKAAVKE------RKMTKVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSES 544

Query: 577 RSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            SY    T R+ TR  +YG K  ENIVQA +RD+LAE M+   K G+DIV  +HDE+V E
Sbjct: 545 VSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLE 604

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P+    +   +  +M   P W +GLPLKA G+ES  Y+K
Sbjct: 605 VPEGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase
 gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2]
 gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2]
          Length = 648

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/699 (33%), Positives = 329/699 (47%), Gaps = 76/699 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL K G+  Y E  D  ++LFA+ FDD PV++ D      +P  + 
Sbjct: 1   MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL ++ V   A+N+ FERT +   FNL +   +W CT V A + GLP  L  V +ALKL
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           S+QK + GK LI  F   CK         RN P H  E W  F  YC  DV V R I  R
Sbjct: 121 SAQKDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIKNR 180

Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +        E +LW LDQ INDRG  +DV L        +  +  L  E + LT   + +
Sbjct: 181 ISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLTG--LPN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  E GL +  L +   + ++ +    T    +V   R   ++++V K  
Sbjct: 239 PNSTAQLKKWL-EEKGLTISSLAKDKIEELIENTNDET--VHRVLRLRQEMAKTSVKKYL 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + +A+  D R+RG LQF GASRTGRW+G +   QNLP+      +  + +         
Sbjct: 296 AMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIEDLDTARNLLKGGHYEAI 355

Query: 353 DPDPLQ---IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +    Q   ++S  VR+  I SEG +  V+D + IEARV+AW+AGE+W+L+ F T   +Y
Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKIY 415

Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + A+ F V    +TK    R  GKV ELALGYQGG  A  +M +   GL       LV
Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALNMGLAEGELPELV 475

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           K                                          WR  + ++ + W ++  
Sbjct: 476 KA-----------------------------------------WRTANKKIVKFWYDVEA 494

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN------RSYL 580
           A  + ++  K +  +       +    +   L + LPSGR L Y            +  L
Sbjct: 495 AAIKAVKERKPVKLQ-----HGLTFLYESGILFVQLPSGRRLAYAKPKLELDERFGKEAL 549

Query: 581 NTTTR----QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
               +    +  R  TYGGKL ENIVQA +RD LA  +M    AGY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAVLDV 609

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P   +     +  +M    SWAKGLPL A+G+ +  Y+K
Sbjct: 610 PRG-KNELDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647


>gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
 gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
          Length = 649

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/702 (32%), Positives = 341/702 (48%), Gaps = 81/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLT CG+  Y  A D  ++LF + +DD PVEL D      +P  + 
Sbjct: 1   MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            A+E+ +V   A N+ FER  L    N  +    W CT + A   GLP  L  VG ALKL
Sbjct: 61  NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK   GK+LI  F   CK         RN P+H  E W+ F +YC  DV V RE+ ++
Sbjct: 121 KVQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVRRK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +E  P+  KE +LW LDQ IND G  VD+AL +   +      ++L+ E ++LT   + +
Sbjct: 181 IERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAKTLTK--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  E GL +E L++   Q +L+       +  ++   R   ++S++ K  
Sbjct: 239 PNSVAQLKEWL-KEQGLEVESLSKQAVQNLLTDADG---EIERLLTLRQEMAKSSIAKYA 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349
            +  ++  D R+RG  QF GA+RTGRW+G +F  QNLP+      E+ +++         
Sbjct: 295 AVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKEL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S+ +R+ +I  +G + +VAD + IEARVLAW+A E W L  F+    +Y
Sbjct: 355 ELLYESVPIVLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGKIY 414

Query: 410 VTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463
             T +R F V   ++ K     + RA GKV  LA GYQGG  A + M +   GL+     
Sbjct: 415 EQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGADKMGLS----- 469

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                T  + + +AWR  + R+   W +
Sbjct: 470 ------------------------------------DTELDDIVRAWRSANQRIVRFWYD 493

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR------ 577
           + +A    +        R+ + V ++  K +   L + LPSGR L Y      +      
Sbjct: 494 VEKAAVLAVRE------REPQRVGILRFKVENGILFITLPSGRRLAYIRPKIEKDLRFDK 547

Query: 578 ---SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
              +Y      +Q  R+ TYGG+L ENIVQ  +RD LAE M+     GY IV  VHDEI+
Sbjct: 548 DGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEII 607

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E     + +   L  +M     WA GLPL+A+G+E+  Y+K
Sbjct: 608 TEM-RKGQGSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648


>gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 646

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/700 (31%), Positives = 324/700 (46%), Gaps = 83/700 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            TL ID ET S +DL  CG+ KY+      ++L A+  DD      D  +    P+   E
Sbjct: 3   RTLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIE 62

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L +  VT  A N+ FERT     ++       W CT V A    LP +L+ VG  L L 
Sbjct: 63  MLFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLD 122

Query: 120 SQKMEEGKELIARFCKG---ETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRL 175
            QKM EGKELI  FC             RN P +  E WR F  YC  DV V ++I +RL
Sbjct: 123 KQKMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQRL 182

Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              P+  +EQE++ LDQ INDRG  VD  L +       + +         LT   + + 
Sbjct: 183 AKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTG--LENP 240

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             + +LK WL  E GL ++ L + T + +   + K      +V   R+  S+++V K   
Sbjct: 241 NSVSQLKLWL-KEKGLEVDSLAKDTVKDL---SMKAEGDVQEVLKLRLATSKTSVKKYEA 296

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT----- 348
           +  ++ ++ R+ G LQF GA+RTGRW+G +    NLP+      EL + +          
Sbjct: 297 IDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEEVE 356

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
               S P+   ++S+ +R+  +A  G + +++D + IEARVLAW+AGE+W+L+ FET   
Sbjct: 357 LFYESTPN---VLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGK 413

Query: 408 LYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + +  F+VA  ++TK    R  GK+ ELALGY G   A   M +   GL       
Sbjct: 414 IYEASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMGALKMGLTEEE--- 470

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                    +   WR  +  ++  W  +
Sbjct: 471 --------------------------------------LPGLVSTWRSANPHITAFWWAV 492

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNN 576
            +A    + + K     +      V  +     L + LPSGR L Y              
Sbjct: 493 DEAAVTAVRDKKPSKVGR------VSFEYKSGILFVTLPSGRKLSYVKPRMMLNKFGREG 546

Query: 577 RSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            +Y     +++  R  TYG KL ENIVQA SRDILAE M+   K G+DIV  VHDE+V E
Sbjct: 547 LTYEGIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLE 606

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            PD  + +   +  +M  NP W +GLPLKA G+ES  Y+K
Sbjct: 607 VPDG-KSSVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645


>gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14]
          Length = 651

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/706 (29%), Positives = 325/706 (46%), Gaps = 89/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   IDL K G+ +YAED    ++LFA   ++ PV ++D      +PQ + 
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDL-SKEKLPQDIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           EAL +  V   A N+ FER  L        P            W C+++ +   GLP +L
Sbjct: 62  EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  QKM EG +LI  FC   K         RN P+H  + W  F +Y + DV
Sbjct: 122 EGVGTVLKLKDQKMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRRDV 181

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I +RL+  P+     + +  DQ INDRG  +DV       +I    + ++ +EL+
Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   + +   + ++  WL  E G+  + L +   + +L +      +  +V   R +A
Sbjct: 242 ALTS--LENPNSVLQMIGWL-REHGVTTDSLDKKAVKELLKTVDD---KTSKVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      E  + +
Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARKL 355

Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   ++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K 
Sbjct: 356 FKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRSKV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           FE G+D+Y  + ++ F V   +  ++   R  GK+ ELA GY G   A + M +   GL+
Sbjct: 416 FELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMGALDMGLS 475

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 LV +                                         WRQ +  + 
Sbjct: 476 EEELQPLVNS-----------------------------------------WRQANPNIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573
            LW ++  A +  ++               +  +     L + LPSGR L Y        
Sbjct: 495 LLWWDVDNAVKTAVKEQIP------TSTHGIQFEVRSGILFITLPSGRKLAYIKPRIGEN 548

Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
              G + +Y  T T ++  R  +YG K  ENIVQA+SRDILA  +    +  + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQLKE--FKIVGHVH 606

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P   E     +  LM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECP--MEQKIDKIASLMGIAPDWMSDINLRADGYECLFYQK 650


>gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
 gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
          Length = 651

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/706 (29%), Positives = 319/706 (45%), Gaps = 89/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   +DL K G+  YAED    ++L A   D+ PV ++D      +P  + 
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLPDQIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           +AL N  +   A N+ FER  L        P          + W C++V +   GLP +L
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  QK++EG ++I  FC   K         RN P+H  + W  F  Y K DV
Sbjct: 122 EGVGTVLKLKEQKLKEGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKRDV 181

Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  +L   P+     E ++ DQ IND G  +DV        I +  ++K+ +EL+
Sbjct: 182 EVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT   + +   + ++  WL  E G+    L +   + +L        +  +V   R +A
Sbjct: 242 ELTG--LENPNSVLQMIGWL-REHGVTTNSLDKKAVKELLKVVD---AKTTKVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +V  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +  + +
Sbjct: 296 AKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARDL 355

Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   +D        +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+   
Sbjct: 356 FKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           FE G+D+Y  + ++ F V   +     D R  GK+ ELA GY G   A + M +   GL+
Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMGLD 475

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 LV +                                         WRQ +  + 
Sbjct: 476 EQELQPLVDS-----------------------------------------WRQANPNIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573
             W ++ +A +  I+  K      + +   +  K  K  L + LPSGR L Y        
Sbjct: 495 LFWWDVDKAVKTAIKYQK------QTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGEN 548

Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
              G + +Y  T T ++  R  +YG K  ENI+QA+SRDILA  M       + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRIVGHVH 606

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DEI+ E   +   N   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
          Length = 644

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/700 (30%), Positives = 324/700 (46%), Gaps = 82/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L  CG+ +YA  E   ++LFA+  +D P  + D      MP  + 
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V   A N+ FER  +   F L +    W CT V A    LP +L+ VGEAL L
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             +KM EGK+LI  F   CK         RN P +  E W LF  YC  DV V ++I  +
Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+  +EQEL+ +DQ INDRG  VD  L         + +    +    ++   + +
Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  + G+ ++ L +   + ++   +    +  ++   R+  S+++V K  
Sbjct: 239 PNSVSQLKEWLNEK-GIEVDSLAKAAVEELVEKTEG---EISEMMKLRLSMSKTSVKKYE 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---- 348
            +  ++  DGR+ G LQF GA+RTGRW+G +    NLP+      EL + I         
Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDLV 354

Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F    
Sbjct: 355 ELLYDSTPD---VLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAG 411

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  T ++ F++   ++TK    RA GKV  LA  Y G   A   M +   +       
Sbjct: 412 KIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEEELK- 470

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                    + ++WR  +  +   W E+
Sbjct: 471 ----------------------------------------GLVQSWRTANPHIVNYWYEI 490

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NN 576
             A +  ++       RK   V  V +      L + LPSGR L Y             +
Sbjct: 491 DGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSES 544

Query: 577 RSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            SY    T R+ TR  +YG K  ENIVQA +RD+LAE M+   K G+DIV  +HDE+V E
Sbjct: 545 VSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEVVLE 604

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P+    +   +  +M   P W +GLPLKA G+ES  Y+K
Sbjct: 605 VPEGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 645

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 215/697 (30%), Positives = 335/697 (48%), Gaps = 75/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL K G+  Y    +  ++LFA+ FD   V++ D      +P  + 
Sbjct: 1   MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL N ++   A N+ FER  L    N  +  + W CT V A + G P +L  V + L L
Sbjct: 61  EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           + QKM+EGKELI  F   CK         RN P H  E W  F +YC  DV V R I K+
Sbjct: 121 TEQKMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIRKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+S  EQ  + LD  INDRG  VD+ L     +   + +     E + LT   + +
Sbjct: 181 LSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQRLTG--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  E G+ ++ L++     +         +  ++ N R++ +++++ K  
Sbjct: 239 PNSVAQLKQWLI-ENGVEVDSLSKKAVSDLAKEADG---EVERLLNLRLQLAKTSIKKYE 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349
            +  A+  D R+RG LQF GA+RTGRW+G +   QNLP+       L + +         
Sbjct: 295 AIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLTLARNLVKSGDFDTL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S+ +R+  I     + +VAD + IEARV+AW+AGE+W++  F T   +Y
Sbjct: 355 ALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKIY 414

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F V   ++TK    R  GK+ ELALGY G   A   M                
Sbjct: 415 EASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMG--------------- 459

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A++        + +  AWRQ +  +++LW ++ +A
Sbjct: 460 -------------------------ALDMGVAEDELQGLVTAWRQANPNITKLWWDIDKA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN--------RSY 579
             + ++    ++  K      + ++ +   + + LPSGR L Y               +Y
Sbjct: 495 AIKAVKKKTTVMVGK------IKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDAVTY 548

Query: 580 LNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                T++  R  TYG KL ENIVQA++RD+LAE M+   + GY+IV+ +HDEIV E P 
Sbjct: 549 EGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIVIEAPL 608

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  +M   P+WA+ LPL+A+G+E + YRK
Sbjct: 609 N-FGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644


>gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes]
 gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 651

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/706 (30%), Positives = 325/706 (46%), Gaps = 89/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   IDL K G+ +YAED    ++LFA   D+ PV ++D  +   +PQ + 
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           EAL +  V   A N+ FER  L        P          + W C+++ +   GLP +L
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  +KM EG +LI  FC   K         RN P+H  + W  F +Y + DV
Sbjct: 122 EGVGTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRRDV 181

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I +RL+  P+     + ++ DQ INDRG  +DV       +I    + K+ +EL+
Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   + +   + ++  WL  E G+  + L +   + +L +  + T    QV   R +A
Sbjct: 242 ALTG--LENPNSVLQMIGWL-REHGVTTDSLDKKAVKGLLKTVDETTA---QVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      E  + +
Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEAREL 355

Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   ++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K 
Sbjct: 356 FGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           FE G+D+Y  + ++ F V   +     + R  GK+ ELA GY G   A + M +   GL 
Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLT 475

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 LV +                                         WR  +  + 
Sbjct: 476 EEELQPLVNS-----------------------------------------WRLANPNIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573
             W ++  A +  ++               +  +  +  L + LPSGR L Y        
Sbjct: 495 LYWWDVDNAVKTAVKELIP------TSTHGIQFEVKRGILFITLPSGRKLAYIKPRIGDN 548

Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
              G + +Y  T T ++  R  +YG K  ENIVQA+SRDILA  M       + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLKN--FKIVGHVH 606

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P   E     +  LM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECPI--EQKLDEVASLMGIAPDWLSDINLRADGYECFFYQK 650


>gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 651

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/696 (34%), Positives = 330/696 (47%), Gaps = 75/696 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L   G+ +YA  E   ++LFA+  D   V++ D      +P  + 
Sbjct: 9   MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +ALE+  V   A N+ FER  L A     +    W C++V A   G+P  L  V +AL L
Sbjct: 69  DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
            ++KM EGK LI  F    K        +RN P H  + W  F  YCK DV V   I KR
Sbjct: 129 ETEKMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAITKR 188

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+ ++E + ++ DQ INDRG  +D  LA       +  R    + +  LT   V +
Sbjct: 189 LHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELTR--VDN 246

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +L  WL    GL ++ L +      L     L     +V   R   ++S+V K  
Sbjct: 247 PASVTQLLAWL-RSQGLQIDSLAKADVAAALEGA--LEGDVAEVLALRQEMAKSSVKKYE 303

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TS 349
            ++     DGR  G LQF+GA RTGRW+G +   QNLPR S S  E    +         
Sbjct: 304 RMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADML 363

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            T      Q++S+ +R+  +A  G + +VAD + IEAR +AW+AGEQW L  FE G D+Y
Sbjct: 364 ETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGGDIY 423

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKT 468
             T  R F     + +   R   KV  LA GYQGG  A + M     GL+ +  A     
Sbjct: 424 CETGTRMFRQVVEKHSP-LRQRAKVAVLACGYQGGVGALKTMGGEKLGLSEDEMAD---- 478

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                +  AWR  + ++++LW +++ A 
Sbjct: 479 -------------------------------------IVAAWRAANPKIAQLWWDINAAA 501

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-- 584
              I++G A      R V  + +  DK  LI+ LPSGR LVY    +G NR    + T  
Sbjct: 502 IAVIKDGGA------RAVGRIRLAHDKGALIITLPSGRPLVYPSPRIGENRFGGESITHM 555

Query: 585 -----RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                R+  R  TYGGKLTENIVQA +RDILA  +    ++GY +V+ +HDE+V E P+ 
Sbjct: 556 GVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTEVPEG 615

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              +   L  LM+  P WA GLPL AEG+ES  YRK
Sbjct: 616 -RGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650


>gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis]
 gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 651

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 212/706 (30%), Positives = 331/706 (46%), Gaps = 89/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   IDL K G+ +YAED    ++LFA   D+ PV ++D  +   +PQ + 
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           EAL +  V   A N+ FER  L        P          + W C+++ +   GLP +L
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  +KM EG +LI  FC   K         RN P+H    W  F +Y + DV
Sbjct: 122 EGVGTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDV 181

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I +RL+  P+     + ++ DQ INDRG  +D+       +I    + K+ +EL+
Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   + +   + ++  WL  E G+  + L +   + +L +  + T    QV   R +A
Sbjct: 242 ALTR--LENPNSVLQMIGWL-REHGVTTDSLDKKVVKELLKTADETTA---QVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      E  + +
Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEAREL 355

Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   ++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K 
Sbjct: 356 FGTGDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           FE G+D+Y  + ++ F V   +     + R  GK+ ELA GY G   A + M +   GL 
Sbjct: 416 FEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLK 475

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 LV +                                         WRQ +  + 
Sbjct: 476 DKELRPLVDS-----------------------------------------WRQANPNIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573
             W ++ +A +  I+         + +   +  + +K  L + LPSGR L Y        
Sbjct: 495 LFWWDVDRAVKTAIKQ------HIQTETHGIQFEVNKGMLSITLPSGRKLAYVKPKIGEN 548

Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
              G + +Y  T T ++  R  +YG K  ENIVQA+SRDILA  M    +  ++IV  VH
Sbjct: 549 QFGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVH 606

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E       +   + +LM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECGIDQ--SLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650


>gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 653

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 336/701 (47%), Gaps = 80/701 (11%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET S +D+   G  +YAE+  ++LFA+ +DD PV++ D   +  +P  +  AL +
Sbjct: 3   LSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALTD 62

Query: 64  TDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEALK 117
            D+   A N+ FERTVL    + +      +    W CT+V A + GLP +L  V + LK
Sbjct: 63  NDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTLK 122

Query: 118 L--SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREI 171
           L    +KM  G +LI  F   CK         RN PN   E W  F  YC  DV   RE+
Sbjct: 123 LGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAPEKWATFKAYCVRDVEAEREV 182

Query: 172 FKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +RL   P+   E+ LW LDQ INDRG  +D  LA          R ++  E  +L+   
Sbjct: 183 RRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASALSG-- 240

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           + +    E+LK W++ + G     LT+ T   ++ + K  T     +   +M  S+++V 
Sbjct: 241 LENPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAKSET--VKTMLQLKMLLSKTSVK 298

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           K   +V+A  SDGR  G LQF GA+RTGRW+G +   QNLPR + +  +  + +     +
Sbjct: 299 KYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAELDDARALLRCGDT 358

Query: 350 ITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
              +    +P  ++S  +R+  I + G +  VAD + IEARV+AW+AGE+W++  F  G 
Sbjct: 359 DALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADGG 418

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463
           D+Y  + ++ F+V   +  V    R  GKV ELALGY GG  A ++M +   GL      
Sbjct: 419 DIYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGADKLGLTDAE-- 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                   E +K++WR+   R+  LW++
Sbjct: 477 ---------------------------------------LEEIKQSWRKASPRIVRLWSD 497

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------G 574
              A  + +     +  +       + ++     L + LPSGRSL Y             
Sbjct: 498 FESAALEAVRERSTVSLQ-----HGIKLECRSGILFIRLPSGRSLAYVKPRIEYEESFDR 552

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              +Y         ++ TYGG+L EN +QA++RD LA  M     AGY IV+ +HDE+V 
Sbjct: 553 EGLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMHIHDEVVV 612

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ETP + +   + +  +M+    WA GL L A+GY +  Y+K
Sbjct: 613 ETPRSVD-CLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652


>gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 644

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/698 (30%), Positives = 315/698 (45%), Gaps = 78/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID E+ S  DL K G+ +YAE  D  ++LFA+  D  PV + D      +P V++
Sbjct: 1   MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL +  V   A N+ FERT L    N  I    W C++V +   GLP +L+        
Sbjct: 61  QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTGA 120

Query: 119 SSQKMEEGKELIARFCKGETH---ECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             +K++EGK+LI  FCK           +RN P+H  E W  F  Y + DV   + I  +
Sbjct: 121 DKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQDK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   P+  +E   + LDQ INDRG  +D              R  L   L +LT   + +
Sbjct: 181 ISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRTLTK--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + ++K WL  E G+    L +     +L S +       +V   R + ++S+V K  
Sbjct: 239 PNSVMQMKDWL-AEQGVETGALDKAAVHELLKSAQGD---VAEVLTIRQKLAKSSVKKYT 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + +    D R RG +QF GA+R+GR++G +   QNLP+      +  + +         
Sbjct: 295 AMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEAL 354

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           D   P    ++S+ +R+  I  E  + +VAD + IEARV+AW+AGE W+ + F T   +Y
Sbjct: 355 DMLYPSVPDLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKIY 414

Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + ++ FNV   ++ K    R  GK+ ELALGY G   A + M +   G+         
Sbjct: 415 EASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMGALDMGVEEEELK--- 471

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                  + +AWRQ + ++ + W  + Q
Sbjct: 472 --------------------------------------PLVQAWRQANPKIVQFWWAVDQ 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRS 578
           A ++ ++       R       +        L++ LPSGR L Y                
Sbjct: 494 AAQKAVKQ------RTTTSTHGISFTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGREGLC 547

Query: 579 YLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           +     T++  R  TYG KL ENIVQAVSRD+LA  M    + GY IV+ VHDE+V E  
Sbjct: 548 FEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHVHDEVVVEA- 606

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  S +  LMT  P W+ GL LKAEGY    Y+K
Sbjct: 607 -KQHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643


>gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 655

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/707 (32%), Positives = 321/707 (45%), Gaps = 85/707 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TLF D E+ SP  L K G+  YAE  D  ++LF +  D  PV++ D      MP  + 
Sbjct: 1   MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109
            AL ++ V   AHN+ FER  L A              +   +W CT++ +   GLP +L
Sbjct: 61  AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPN-HREAWRLFGEYCKGDV 165
            AV   LKL  QK   GK+LI +FC   T         RN P+     W  F +Y + DV
Sbjct: 121 DAVAAVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  RL   P+   E + + LDQ IND G  +D  L      + +  R       +
Sbjct: 181 EVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT   + +     +LK WL    G  LE L +       ++    T    +V   R   
Sbjct: 241 KLTG--LDNLNSPIQLKQWLVTR-GCELESLAKAEVD---AALDTATGVVKEVLELRGDL 294

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +     +DGR RG +QF GA RTGR++G +   QNLPR      +  + +
Sbjct: 295 AKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARSL 354

Query: 344 THLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                    +         +S  +R+  I S G + +VAD + IEARV+AW+AGE   L 
Sbjct: 355 VQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLA 414

Query: 401 AFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGL 457
           AF  G+DLY  T +R F+V   +  +  + R  GK+  LA GY G   A + M + T GL
Sbjct: 415 AFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMGAFTMGL 474

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             +                                             +  AWRQ +  +
Sbjct: 475 AEHELK-----------------------------------------PIVDAWRQANPHI 493

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGN 575
            +LW ++ QA    I + + I  R  R         +   L + LPSGR L Y    +G 
Sbjct: 494 VQLWADVEQAAIAAISSRQPIRLRNLR------FSVESGILFIELPSGRRLAYVQPRLGE 547

Query: 576 NR-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
           NR           TT R+  +  TYGGKL ENIVQA++RD+L  GM    KAG+ IV+ V
Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRIVMHV 607

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDEIV + P   +F  +    LM++ P+WA+GLPL A+GYE   YRK
Sbjct: 608 HDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654


>gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725]
 gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725]
          Length = 657

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/704 (31%), Positives = 325/704 (46%), Gaps = 77/704 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +D+ K G+ KYA  +D  ++LFA+  D   V++ D     ++P+V+ 
Sbjct: 1   MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL + ++   A+N+ FE   L         I +W  T+      G  + L A G A+ L
Sbjct: 61  EALNDKNIIKHAYNAPFEWWCLNQA-GYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119

Query: 119 SSQKMEE--GKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
              K ++  GK LI  FC   K         RN P+H  E W LF  YC  DV    EI+
Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           KRL   P+  +EQELW LDQ IN  G  +D  L      I D+   +L +E   +T   +
Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTEEAIQVTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  +TG  +E+L + T   ++ S +    +A++V   R   +++++ K
Sbjct: 238 DNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLED--KEAVRVLEIRQELAKTSIKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              + EA+  DGR+RG LQF GA+RTGRW+G +   QNLPR      +  + I       
Sbjct: 296 YVAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREIVKSQDAD 355

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +    +S  +R+  + SEG K VVAD + IEARV+AW+AGEQW+ + F T   
Sbjct: 356 FLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQEVFATHGK 415

Query: 408 LYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
           +Y  + ++ F V    + K       R  GKV ELALGY G + A   M +   GL    
Sbjct: 416 IYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMGALDMGLEEKE 475

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                       V + WR  + R+++LW
Sbjct: 476 LPD-----------------------------------------VVRRWRNANKRITDLW 494

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---- 577
             +  A  + +E G+    +       + +  D++ L + LPSGR L Y           
Sbjct: 495 YGIENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPHLKENRFG 554

Query: 578 ------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                   +N TT++   + TYGGKL ENIVQA+SRD LA  +      G   V+ +HDE
Sbjct: 555 SNALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQTVMHIHDE 614

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            V +       + + +  LM     WA GL LKA G+ES  Y K
Sbjct: 615 AVIDAD--PNVDLNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656


>gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 650

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 210/719 (29%), Positives = 315/719 (43%), Gaps = 114/719 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L ID ETRS +D+ K G+ +YAE  D  ++LF +  D   V++ D  +   +PQ + 
Sbjct: 1   MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98
           +AL +  V   A N+ FER  L    +                      +  H W CT+V
Sbjct: 61  DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE---AWR 155
            +   GLP +L  VG  L L  QKM EGK LI  F              P H      W 
Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQKMNEGKALIRYFSTP-----------PFHEPTGAKWD 169

Query: 156 LFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           LF  Y + DV V   I KRL   P+     E + LDQ INDRG  +D+ L     QI   
Sbjct: 170 LFKSYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVR 229

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
            + KL   L++LT   + +   + ++K WL  E G+  E L + +   +L++        
Sbjct: 230 TKEKLTDRLKTLT--SLENPNSVTQMKAWL-KEQGVETESLDKKSVTALLANVPDP---L 283

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +V   R + ++S+V K   +   + SDGR RG  QF GA+RTGR+SG     QNLP+  
Sbjct: 284 KEVLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNH 343

Query: 334 RSHEELDQ------IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +  E  +          L     S PD   ++S  +R+  I+ EG+K +VAD + IEAR
Sbjct: 344 LADLEYARSLVRQGSFAALELLYESVPD---VLSQLIRTAFISKEGRKFIVADFSAIEAR 400

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGA 445
           VL+W+A E+W++  F    D+Y  T  R F+    +       R  GK+ EL+ GY G  
Sbjct: 401 VLSWLAKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSV 460

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            A +   +                                        +E          
Sbjct: 461 GALKAFGA----------------------------------------LESGMKEEELNP 480

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           +  AWR  +  + + W  + +A +  I+       R  +    +      + + + LP G
Sbjct: 481 LVDAWRAANPNIVDFWWAVDRATKDCIKE------RSTKVTHGIRFIYQGSMMFIELPCG 534

Query: 566 RSLVYRDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           R L Y           G + +Y+    +++  R  +YG KL EN+ QA+SRDIL   M  
Sbjct: 535 RRLAYVKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQT 594

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 DIV  VHDE++ E  +    + S +   M   P WA GLPL+A+G+E + Y+K
Sbjct: 595 L--RTMDIVAHVHDELIIECDE--RVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649


>gi|332522757|ref|ZP_08399009.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332314021|gb|EGJ27006.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 653

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 209/707 (29%), Positives = 322/707 (45%), Gaps = 89/707 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDC-VHDPVMPQVL 57
           +  L ID ET   IDL K G+ +YAED    ++LFA   D+ PV ++D  +    +PQ +
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDESFELLLFAVSVDNGPVTVYDLDLTKEKLPQDI 62

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSA 108
            E L +  V   A N+ FER  L        P            W C+++ +   GLP +
Sbjct: 63  LETLVDNSVIKWAFNASFERICLSNWLKKYHPDLLLDGFLSPVSWRCSMIWSAYLGLPLS 122

Query: 109 LKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHRE-AWRLFGEYCKGD 164
           L+ VG  LKL  QKM EG +LI  FC   K         RN P+H    W  F +Y + D
Sbjct: 123 LEGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHASNKWSTFIDYNRRD 182

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I +R++  P+ S     ++ DQ IND G  +DV       +I    + K+  EL
Sbjct: 183 VEVELAIKERVKNFPVPSFVWNEYHQDQIINDHGIGIDVDFVKAALKIDGESKAKIQAEL 242

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           ++LT   + +   + ++ +WL  E G+  + L +   + +L +  + T    QV   R +
Sbjct: 243 KALTG--LENPNSVLQMISWL-REHGVATDSLDKNAVKELLKTVDETTA---QVLKLRQQ 296

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +  + 
Sbjct: 297 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 356

Query: 343 ITHLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
           +       +++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K
Sbjct: 357 LFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 416

Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGL 457
            FE G+D+Y  + ++ F V   +     + R  GK+ ELA GY G   A + M +   GL
Sbjct: 417 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGL 476

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +      LV +                                         WR  +  +
Sbjct: 477 SKEELQPLVNS-----------------------------------------WRLANPNI 495

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---- 573
              W ++  A +  ++               +  +     L + LPSGR L Y       
Sbjct: 496 VLYWWDVDNAVKTAVKELIP------TSTHGIQFEVKSGILFITLPSGRKLAYIKPRIGD 549

Query: 574 ----GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
               G + +Y  + T ++  R  +YG K  ENIVQA+SRDILA  M       + IV  V
Sbjct: 550 NQFGGESVTYEGSGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLKD--FRIVGHV 607

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDEI+ E   +   N   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 608 HDEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECFFYQK 652


>gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/708 (32%), Positives = 316/708 (44%), Gaps = 89/708 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LF+D ET SP++LTK G+  YAE  D  V+LF +  D +PV++ D      +P  + 
Sbjct: 1   MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108
           EAL +  VT  A N+ FER  L A      P            +W CT+V +   GLP +
Sbjct: 61  EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKP-NHREAWRLFGEYCKGD 164
           L+ V   L L  +K   GK+LI RFC             RN P +  + W  F  Y + D
Sbjct: 121 LEQVATVLDLPVRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNRRD 180

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I  RL   P+   E   + LDQ IND G  +D  L     Q     R       
Sbjct: 181 VEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLARA 240

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT   + +     +LK WL    G  L+ LT+     V ++    T +  +V   R  
Sbjct: 241 QELTG--LENPNSPIQLKDWLTA-HGTPLQSLTKD---EVAAALDTATGEVREVLQLRGE 294

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++S+V K  T+      DGR RG LQF GA RTGR++G +   QNLPR         + 
Sbjct: 295 LAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEARD 354

Query: 343 ITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           +         +         +S  +R+  + ++G + VVAD + IEARV+AW+AGE   L
Sbjct: 355 LVRTGEFEAVELLYDSVPDTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATTL 414

Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456
           +AF  G+DLY  T +R F V   +     + R  GK+  LA GYQGG  A + M +   G
Sbjct: 415 QAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMG 474

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L  +    LV                                           WR  +  
Sbjct: 475 LAESELQPLVDA-----------------------------------------WRAANPN 493

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574
           V +LW +++ A  + I        R+   V  +    +   + + LPSGR L Y    +G
Sbjct: 494 VVQLWADINAAAIEAIST------RQPTGVGALTFTVESGIMFVRLPSGRRLAYVKPKLG 547

Query: 575 NNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
            NR      T       R+  +  TYGGKLTENIVQAV+RD+L  GM    +AGY IV+ 
Sbjct: 548 ENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRIVMH 607

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDEIV ET          +  LM + P WA GLPL A+GY    Y K
Sbjct: 608 VHDEIVVETATA---TVDEICELMATAPDWAAGLPLAADGYACDFYMK 652


>gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
          Length = 653

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/708 (31%), Positives = 315/708 (44%), Gaps = 89/708 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LFID ET SP++L   G+  YA+     ++LF +  D  PVE+ D  +   +P+ + 
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108
            AL +  V   A N+ FER  L +      P            +W CT+V +   GLP +
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKP-NHREAWRLFGEYCKGD 164
           L  V   L L  +K   GK+LI +FC   T         RN P +  + W  F  Y + D
Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I  RL   PL + E + + LDQ +ND G  +D  L           R       
Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT   + +     +LK WL    G  L+ LT+     V ++    T Q  +V   R  
Sbjct: 241 QELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKD---EVAAALDTATGQVREVLLLRGE 294

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++S+V K   +      DGR RG LQF GA RTGR++G +   QNLPR         + 
Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354

Query: 343 ITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           +         +         +S  +R+  I ++G + VVAD + IEARV+AW+AGE   L
Sbjct: 355 LVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGETTTL 414

Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456
           +AF  G+DLY  T +R F V   +     + R  GK+  LA GYQGG  A + M +   G
Sbjct: 415 EAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMG 474

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L  +    LV                                           WR  +  
Sbjct: 475 LAESELQPLVDA-----------------------------------------WRAANPS 493

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574
           V +LW +++ A  +TI        R+   V  +    +   + + LPSGR L Y    +G
Sbjct: 494 VVQLWADINAAAIETIST------RQPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547

Query: 575 NNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
            NR    + T       R+  +  TYGGKLTENIVQAV+RD+L   M    +AG+ IV+ 
Sbjct: 548 ENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGHRIVMH 607

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDEIV ET          +  LM++ P WA GLPL+A+GY    Y K
Sbjct: 608 VHDEIVVETATA---TVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652


>gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 662

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/709 (31%), Positives = 326/709 (45%), Gaps = 90/709 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL  CG+ +Y E  D  V+LFA+ +DD PV++ D      +P  + 
Sbjct: 9   MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L + +V   A N+ FERT +K  F +     +W CT V A + GLP  L+ V E LKL
Sbjct: 69  HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFK 173
            +QK   GK LI  F   CK         RN P H   E W  +  Y   DV V RE+ +
Sbjct: 129 EAQKDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREVRR 188

Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +LE  P+   E +LW LDQ INDRG  +D  L +      D  +T L QE + +T   + 
Sbjct: 189 KLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDITQ--LE 246

Query: 232 SSRCLEKLKTWLFLETGLHLED-LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           +   L KLK WL  E GL   D L +     +L   +       +V   R    +++V K
Sbjct: 247 NPNSLTKLKEWL-AEQGLETPDGLGKEHMPTLL--VQAPDEDTRRVLQIRQELGKTSVDK 303

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            N +  ++ +DGR RG LQF GA+RTGRW+G +   QNLP+   +   + + +       
Sbjct: 304 YNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREV-----LK 358

Query: 351 TSDPDPLQ--------IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
           + D D L+        ++S  +R+  I S G + +V+D + IEAR++AW+A E W L  F
Sbjct: 359 SGDFDLLEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVF 418

Query: 403 ETGEDLYVTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           +    +Y    ++ F V    + K     + RA GKV  LA GYQGG  A  KM      
Sbjct: 419 QDHGKIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMG----- 473

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                              A++          + K WR+ + R+
Sbjct: 474 -----------------------------------ALKSGIPEEELPGIVKRWRKANPRI 498

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---- 573
            +LW    +A    +   + +          V  +     L   LPSGRSL Y +     
Sbjct: 499 VKLWYAAEEAALTAVREKRTVPL-----AHGVKYRYKSGTLFADLPSGRSLAYVNPRIKP 553

Query: 574 -------GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
                  G     ++   ++     TYGG+L EN+VQA++RD LAE +M    A Y  V+
Sbjct: 554 DPNFGKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEYRTVM 613

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            VHDE+V + P     +   +  +M+    WA GLPL A G+E + Y+K
Sbjct: 614 HVHDEVVLDVPIGT-GSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661


>gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/711 (32%), Positives = 313/711 (44%), Gaps = 95/711 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LFID ET SP++L   G+  YA+     ++LF +  D  PVE+ D  +   +P+ + 
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108
            AL +  V   A N+ FER  L +      P            +W CT+V +   GLP +
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKP-NHREAWRLFGEYCKGD 164
           L  V   L L  +K   GK+LI +FC   T         RN P +  + W  F  Y + D
Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I  RL   PL + E + + LDQ +ND G  +D  L           R       
Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT   + +     +LK WL    G  L+ LT+     V ++    T Q  +V   R  
Sbjct: 241 QELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKD---EVAAALDTATGQVREVLLLRGE 294

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++S+V K   +      DGR RG LQF GA RTGR++G +   QNLPR         + 
Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354

Query: 343 ITHLPT------SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           +              S PD L   S  +R+  I ++G + VVAD + IEARV+AW+AGE 
Sbjct: 355 LVRTGNYDAVELLYDSVPDTL---SQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEA 411

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS- 453
             L+AF  G+DLY  T +R F V   +     + R  GK+  LA GYQGG  A + M + 
Sbjct: 412 TTLEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGAL 471

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             GL  +    LV                                           WR  
Sbjct: 472 RMGLAESELQPLVDA-----------------------------------------WRAA 490

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--R 571
           +  V +LW +++ A  + I        R    V  +    +   + + LPSGR L Y   
Sbjct: 491 NPNVVQLWADINAAAIEAIST------RLPTSVGALTFTVESGIMFIRLPSGRRLAYVKP 544

Query: 572 DVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
            +G NR           TT R+  +  TYGGKLTENIVQAV+RD+L  GM    +AG+ I
Sbjct: 545 KLGENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRI 604

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V+ VHDEIV ET          +  LM   P WA GLPL A+GY    Y K
Sbjct: 605 VMHVHDEIVVETATA---TVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652


>gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes
           L99]
          Length = 644

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/693 (31%), Positives = 324/693 (46%), Gaps = 72/693 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
             L ID ET S  D+  CG   Y  +ED  ++LFA+ +DD PV++ D   D  +P  + E
Sbjct: 4   KVLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLTIDE-IPDTVLE 62

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L N  V   AHN+ FERT L   +N  +P  +W CT+V     GLP++L  + +AL+L+
Sbjct: 63  DLNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLA 122

Query: 120 SQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRL 175
            +K  EGK LI  FC   K         RN P H  E W  F EYC+ DV V R I K++
Sbjct: 123 QEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAKKI 182

Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              P    EQ  W LDQ I D+G  +DV L        +  +  L ++ + LT   + + 
Sbjct: 183 AKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTG--LENP 240

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             +++LK WL    G  +  L + +   +L+  + L     ++   R   S++++ K   
Sbjct: 241 NSVQQLKDWLAD-MGYPVSSLNKDSVSELLAD-EDLDEDVREMLLLRQEMSKTSIKKYEK 298

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           +  A   DGR+RG LQF GA+RTGRW+G +   QNLPR         +           +
Sbjct: 299 MQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFE 358

Query: 354 ---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
               +   ++S  +R+  IA +G    + D + IEARV+AW+AGEQW+L  F +   +Y 
Sbjct: 359 MMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYE 418

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTN 469
            + ++ F++   +V K+ R  GKV ELALGY GG  A   M +   GL  N         
Sbjct: 419 ASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMGALEMGLKENELQ------ 472

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                               +  AWR+    ++ LW  + +  +
Sbjct: 473 -----------------------------------GIVDAWRKASPAITSLWRGVEKHAK 497

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYLNT 582
             I        RK +    +    +   L + LPSGR+L Y          G    Y   
Sbjct: 498 LAIST------RKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICYEGV 551

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
           T +   ++YTYGGKL ENIVQA++RD LA  +      G D V+ VHDE + E  ++ E 
Sbjct: 552 TDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQES-ES 610

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +   L  ++    SWA GLPL+ +G+ S  Y K
Sbjct: 611 SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643


>gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 641

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 202/708 (28%), Positives = 312/708 (44%), Gaps = 101/708 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L +D ETRS +D+ + G+ +Y  AED  ++LF +  D   V++ D V    +PQ + 
Sbjct: 1   MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFN-----------LDIPIHRWICTLVLARSNGLPS 107
           +AL +  V   A N+ FER  L    +             +    W CT+V +   GLP 
Sbjct: 61  DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR---EAWRLFGEYCKGD 164
           +L  V   L L  QKM EGK LI  F              P H    E W LF  Y + D
Sbjct: 121 SLAVVARVLGLEEQKMTEGKALIRYFSTP-----------PFHEPTGEKWELFKSYNRRD 169

Query: 165 VTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I +RL   P+     E + LDQ INDRG C+D+       +I    + K+   L
Sbjct: 170 VEVEMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRL 229

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           ++LT   + +   + ++K WL  E G+  E L + T   +L++   L     +V   R +
Sbjct: 230 KTLTG--LENPNSVAQMKAWL-KEQGVETESLDKKTVAALLTNVSAL---LKEVLELRQQ 283

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++S+V K   +   + +D R RG  QF GA+RTGR+SG     QNLP+   ++ E  + 
Sbjct: 284 LAKSSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARS 343

Query: 343 ITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           +         +        ++S  +R+  I  EG+K +VAD + IEARVL+W+A E+W++
Sbjct: 344 LVRQGNFAALELLYESVSDVLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRM 403

Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456
             F    D+Y  T  R F+    +       R  GK  ELA GY G   A +   +  +G
Sbjct: 404 DVFANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFGALESG 463

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +    LV                                           WR  +  
Sbjct: 464 MKEDELKPLVDA-----------------------------------------WRTANPN 482

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573
           + + W  + +A +  I+       R       +        + + LPSGR L Y      
Sbjct: 483 IVDFWWAVDRAAKDCIKE------RSITGTHGIKFIYQSGMMFIELPSGRRLAYVKPRIG 536

Query: 574 -----GNNRSYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
                G + +Y+    +++  R  +YG KL ENI QA+SRD+L   M        DIV  
Sbjct: 537 ENQFGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQTL--RSMDIVAH 594

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDE++ E  +    +++     M   P WA+GL L+A+G+E + Y+K
Sbjct: 595 VHDELIIECDERVSLSSA--CEQMARTPLWAEGLLLRADGFECQFYQK 640


>gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes]
 gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes]
 gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 651

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 213/706 (30%), Positives = 324/706 (45%), Gaps = 89/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   IDL K G+ +YAED    ++L A   D+ PV ++D  +   +PQ + 
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYD-FNKEKLPQDIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           EAL    V   A N+ FER  L        P            W C+++ +   GLP +L
Sbjct: 62  EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  QKM EG +LI  FC   K         RN P+H    W  F +Y + DV
Sbjct: 122 EGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDV 181

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I +R++  P+ S     ++ DQ INDRG  +DV       +I    + K+  EL+
Sbjct: 182 EVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   +     + ++ +WL  E G+  + L +   + +L +  + T    QV   R +A
Sbjct: 242 TLTG--LEKPNSVLQMISWL-REHGVATDSLDKKAVKELLKTVDETTA---QVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +  + +
Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEAREL 355

Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                  +++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K 
Sbjct: 356 FRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           FE G+D+Y  + ++ F V   +     + R  GK+ ELA GY G   A + M +   GL+
Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLS 475

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 LV +                                         WRQ +  + 
Sbjct: 476 EEELQPLVNS-----------------------------------------WRQANPNIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W ++  A +  ++               +  +     L + LPSGR L Y    +G N
Sbjct: 495 LYWWDVDNAVKTAVKELLP------TSTQNIQFEVKSGILFITLPSGRKLAYIKPRIGEN 548

Query: 577 R------SYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           +      +Y  T T ++  R  +YG K  ENIVQA+SRDILA  M       + IV  VH
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLND--FKIVGHVH 606

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P   E     +  LM   P W   + L+A+GYE   Y+K
Sbjct: 607 DEVIIECPI--EQKLDEVASLMGIAPYWLSDINLRADGYECFFYQK 650


>gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
 gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
          Length = 655

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/706 (32%), Positives = 323/706 (45%), Gaps = 83/706 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TLF D E+ S   L K G+  YAE  D  ++LF +  D  P+E+ D  +   +P  + 
Sbjct: 1   MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
            AL +  V   AHN+ FER  L A      P           +W CT++ +   GLP +L
Sbjct: 61  AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPN-HREAWRLFGEYCKGDV 165
            AV   LKL  QK   GK+LI +FC   T         RN P+     W  F +Y + DV
Sbjct: 121 DAVATVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  RL   P+   E + + LDQ IND G  +D  L      + +  R       +
Sbjct: 181 EVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLARAQ 240

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   + +     +LK WL    G  L+ L +       ++    T    +V   R   
Sbjct: 241 TLTG--LENPNSPIQLKQWLASR-GCVLDSLAKAEVD---AALDTATGTVKEVLGLRGDL 294

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +     SDGR RG +QF GA RTGR++G +   QNLPR      +  + +
Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTL 354

Query: 344 THLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                    +         +S  +R+  I S G + +VAD + IEARV+AW+AGE   L+
Sbjct: 355 VRTGNLEALELLHESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLQ 414

Query: 401 AFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           AF  G+DLY  T +R F V   +  V  + R  GK+  LA G+ G   A ++M + T   
Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMGALT--- 471

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                           EH ++          +  AWR  +  + 
Sbjct: 472 ----------------------------MGLAEHELK---------PIVDAWRAANPHIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
            LW  + +A    I + ++I  R  R         +   L + LPSGR L Y    +G N
Sbjct: 495 ALWAGVEEAAIAAIASRQSIRLRNLR------FSVEAGILFIELPSGRRLAYVKPRLGEN 548

Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R           TT R+  +  TYGGKLTENIVQA++RD+L  GM    KAG+ IV+ VH
Sbjct: 549 RWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQIVMHVH 608

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DEIV + P+   F A+    LM++ P+WA+GLPL A+GYE   YRK
Sbjct: 609 DEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
 gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
          Length = 653

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/700 (32%), Positives = 332/700 (47%), Gaps = 73/700 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ID+ K G  KYA+  D  +++FA+ +D  PV++ D      +PQ + 
Sbjct: 1   MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A+N+ FE   L   F    PI +W CT V     G  + L AVGEAL +
Sbjct: 61  EALADPAVVKHAYNAAFEWYCLNRFFY--SPIEQWRCTQVHGLYCGYTAGLGAVGEALGI 118

Query: 119 SSQK--MEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
              K  +  G  LI  FC   K      +  R  P+H  E W+LF EYC GDV    EI 
Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+  +E +LW+LDQ IN RG   D+ +      + +   ++L  E  SLT   +
Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            + + +++L  WL  ETG  +E+L + T  +++    +   +A +V   R   S+++  K
Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLDE--GKARRVLEIRQELSKTSTKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
              +  A  SD R+RG LQF GA+RTGRW+G +   QNLPR   S  E  + +     + 
Sbjct: 295 YAAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVE 354

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +    +S  +R+  +   GK+L VAD + IEARV+AW+AGEQW+L  F T   
Sbjct: 355 MLKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFATHGK 414

Query: 408 LYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + ++ F V   Q+ K  D R  GKV ELALGYQGG  A   M              
Sbjct: 415 IYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMG------------- 461

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A++          +   WR  + R+ +LW  + 
Sbjct: 462 ---------------------------ALDQGLTEAELPEIVTRWRNANRRIVDLWYSME 494

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--GNNRS----- 578
            A  + +E G+ +  R        +    ++   + LPSGR L Y       N       
Sbjct: 495 AAAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGKPAL 554

Query: 579 ---YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
               ++ T+++ T   TYGGKL EN VQA++RD LA  +M     GY IVL VHDE+  E
Sbjct: 555 HYWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEVGAE 614

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               DE     +  +M     WA GLPLK +G+ +  Y K
Sbjct: 615 LSSADEL--DRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652


>gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703]
          Length = 699

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/704 (36%), Positives = 377/704 (53%), Gaps = 38/704 (5%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET     + K G   YAE V V++  +  +D PV  WD      MP+ LK  L
Sbjct: 3   KKLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN--LDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           ++  + I A NS+F+RT+++      +   I RW  T+V A ++GLP  L  + E L ++
Sbjct: 62  QDPSIEIYAQNSHFDRTMMRHDMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEILGIT 121

Query: 120 SQK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             K   +EGK LI  FCK         R     H E W+ F +Y   D+   R I K+L 
Sbjct: 122 QDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKLP 181

Query: 177 PLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             +   KE  LW+ DQ INDRG  +D  LA      V  E+  L +  ++LT   V ++ 
Sbjct: 182 VWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAAT 241

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             + L   +    G+ L D+ ++T +R ++   +L     ++   R++AS ++  K  TL
Sbjct: 242 QRDALLRHIVESFGVDLPDMQKSTLERRIAD-PELPSVLRELLAIRLQASTTSTSKYKTL 300

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352
           ++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP    E +D  I  L        
Sbjct: 301 LKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLL 360

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--------- 403
             + +++IS  +R C++A +GKKLVV+DL+ IE RVLAW+AGE+WKL+AF          
Sbjct: 361 FDNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYD 420

Query: 404 -------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                   G DLY   YAR+FN++P  VTK QR IGKVMEL LG+ GG  AF   A   G
Sbjct: 421 EGGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYG 480

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+L+  A+    N       +A+++ +   +      + +  +  AC+ +K+ WR  H  
Sbjct: 481 LDLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSE-QVFIACDSLKRMWRNAHPE 539

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573
               W+E+     + I N K     ++     + +++D + L + LPSGRS+ Y  +   
Sbjct: 540 TVSFWSEIENTVRRAIINPKQTFVCRK-----LKIRRDGSWLRIQLPSGRSVCYPGIRIE 594

Query: 574 GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           G+  SY+  NT +R+  R  TYGGKL EN  QA +RD++A  M      GY+I LTVHDE
Sbjct: 595 GDKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDE 654

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ E PDTD F +  L  L+ +NP WA  LPL A G+E+  YRK
Sbjct: 655 VLTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698


>gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
          Length = 646

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/697 (31%), Positives = 333/697 (47%), Gaps = 78/697 (11%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S +D+TK G+  Y  AED  ++LFA+ ++D  + + D      +PQ + E L
Sbjct: 2   LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +   A N+ FERT L    N  +P  +W C+ V A + G   +L+   ++L L  Q
Sbjct: 62  TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE--PL 178
           KM+EGK LI  F           RN P H  E W++F  YCK DV V R + K+LE  P+
Sbjct: 122 KMKEGKALIRYFSMPCKR-GERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYPV 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           + KE ELW LDQ IND G  +D  L H+  +     ++K  +E  +LT   + +     +
Sbjct: 181 TKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALTG--LENPNSQVQ 238

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           LK WL    G+  E L++   + +L   +    +  +V   R   S+++V K   +  A+
Sbjct: 239 LKGWL-ETKGVKAESLSKEKVRELLKEVED--EKVKRVLKLRQELSKTSVKKYEAIKRAV 295

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TSITSDPD 355
             D R+RG L+F GA+RTGRWSG +   QNLPR +  + E  +++               
Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
             +++S  +R+  I +   + +V+D + IEARV+AW+AGE+W +  F+    +Y    +R
Sbjct: 356 VPEVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAASR 415

Query: 416 SFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTN 469
            F V   ++ K       R  GKV  LA GYQG   A   M +   GL     +      
Sbjct: 416 MFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVKMGLKEEELS------ 469

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                               +  AWR+ +S + +LW ++  A  
Sbjct: 470 -----------------------------------GIVAAWRKSNSNIVKLWRKIEDAAI 494

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS----------- 578
           + +   K +     +    +     +  L + LPSGRSL Y      +            
Sbjct: 495 KAVREKKVV-----KMQYGLEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKLKLTYE 549

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
            +   T+   R  TYGGKLTENIVQA++RD LA  M+   +AGY IV  VHDE++ + P+
Sbjct: 550 GIEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVILDVPN 609

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  +M     WAKGLPLKA+G+E+  Y+K
Sbjct: 610 G-FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645


>gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 655

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/697 (31%), Positives = 328/697 (47%), Gaps = 77/697 (11%)

Query: 4   LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S +DL + G+  YAE     ++L A+ FDD  V + D V D  +P  + +AL
Sbjct: 10  LSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLKAL 69

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +   A+N+ FERT L A  N  +P  +W C+ V A + GLP  L  V   L L  Q
Sbjct: 70  IDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLGDQ 129

Query: 122 KMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE- 176
           K   GK LI  F   CK         RN P H  E W  +  YC+ DV V R + KRL  
Sbjct: 130 KDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRLAS 189

Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            P+  KEQ LW LDQ +ND G  +D  L     Q+   E+  L +E + +T   + +   
Sbjct: 190 NPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITG--LENPNS 247

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           + +L+ WL    G+    L +     +L +   L     +V   R   S+++V K   + 
Sbjct: 248 VAQLRDWLTSR-GIETSGLAKKQVSDLLQT--DLPGDVRRVLILRQMMSKTSVKKYEAMD 304

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---SITS 352
            ++  DG +RG LQF GA+RTGRW+G +    NLP+      +  + +          T 
Sbjct: 305 RSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGDLDEARQLVKTGNYELITTL 364

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                 ++S   R+  I  +G + VV+D + IEARV+AW+AGE+W++K FE    +Y  +
Sbjct: 365 YGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKIYEAS 424

Query: 413 YARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTN 469
            ++ F V   ++TK    R  GK+ ELALGY G   A  +M +   GL+ +    LVK  
Sbjct: 425 ASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMGALEMGLSEDELPALVKA- 483

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                   WR+ +  +  LW +L ++  
Sbjct: 484 ----------------------------------------WRKANPNIVNLWYDLEKSAF 503

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG-------NNRSYL 580
           + ++  K + A+       +        L   LPSGRSL Y    +G          +Y 
Sbjct: 504 EAVKWQKVVTAK-----SGIQFYGGSGLLRARLPSGRSLSYVRPQIGIDERFGREEITYE 558

Query: 581 N--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                ++Q  R  TYGGK+ EN+VQA++RD LAE M+    AGY I   VHDE+V E P+
Sbjct: 559 GVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDEVVIEVPN 618

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +  A  +  +M+    WA GLP+ A+ +E+  Y+K
Sbjct: 619 EQDAKAD-IERIMSEPIDWAPGLPMNADSFETGYYKK 654


>gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
 gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
          Length = 653

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/706 (32%), Positives = 333/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L  +   T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKES---TGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
 gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
          Length = 653

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/706 (32%), Positives = 334/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A]
 gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A]
          Length = 653

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/706 (32%), Positives = 329/706 (46%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D  PV   D       P    
Sbjct: 1   MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL + +V   A N+ FER  L   FN ++P   W CT+V     GLP++L  VG
Sbjct: 61  YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTR 169
           E L L +QK + GK LI  F   CK         RN P H  + W+ F +YC  DV V  
Sbjct: 121 EVLNLQNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++ +EQ+ W LDQ INDRG  +  +L    N++  + + +L ++   +T 
Sbjct: 181 SIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K  T +A Q+   R++ S+++
Sbjct: 241 --LENPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYL---KYATGKAKQMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M  D R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCGDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELNIARDFIK 354

Query: 348 ------TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   +  D  P  ++S  VR+   A EG  L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + A+ F V    + K    R  GKV ELALGYQGG  A + M +   G++
Sbjct: 415 FNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMGALDMGID 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +    LV +                                         WR+ +  + 
Sbjct: 475 ESELQGLVDS-----------------------------------------WRKANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             W     A  +T+   +  +    R          K  L++ LPSGRSL Y       +
Sbjct: 494 AFWKGCQDAAIETVRTRQTHLTHGLR------FYMKKGFLMIELPSGRSLAYPKARVGEN 547

Query: 579 YLNTT---------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
              +           R+ T+  TYGGKL ENIVQA +RD+LA  M     AG+ IV  VH
Sbjct: 548 SWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E PD        + ++M+    WA+GL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPDG-SGGLKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652


>gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
          Length = 653

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L      T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKV---ATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30]
 gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30]
          Length = 653

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L      T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKV---ATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 577 ------RSYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 649

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/708 (31%), Positives = 324/708 (45%), Gaps = 93/708 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L +D ET SP +L   G+ +YAED    ++LF +  D  P ++ D      +P  + 
Sbjct: 1   MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           +AL +  VT  A N+ FER  + A      P            W CT+V A S GLP +L
Sbjct: 61  QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVT 168
               +AL+L  +K   G++LI RF           R  P +    W+ +  Y + DV V 
Sbjct: 121 DGAAKALRLPIEKDPAGQKLIRRFSIPGKDGI---RVLPSDDPVGWQQYISYNRRDVDVE 177

Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            ++  RL   P+   E E ++LDQ IND G  +D  LA    ++    R       + LT
Sbjct: 178 VQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQLT 237

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
              + +     +LK WL    G  LE LT+T  +  L +   +T    +V   R   SRS
Sbjct: 238 G--LENPNSPIQLKDWL-AAHGCELESLTKTEVEAALET---VTGDVAEVLRLRQDLSRS 291

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII--- 343
           +V K   ++    SD R RG +Q++GA RTGR++G +   QNLPR         + +   
Sbjct: 292 SVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNA 351

Query: 344 ---THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                L    +  PD L   S  +R+  I S+  + +VAD + IEARVLAW+AGE+  L+
Sbjct: 352 GNSDALELLYSPLPDTL---SQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGTLQ 408

Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGL 457
           AF  G+DLY  T +R F V   +     + R  GK+  LA GY G   A + M +   GL
Sbjct: 409 AFREGKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMGALRMGL 468

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           + +    LV                                           WR  +  V
Sbjct: 469 DESELKPLVDA-----------------------------------------WRDANPMV 487

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--GN 575
            + W+++ QA   T+E       R    V  +++      L + LPS R L Y     G 
Sbjct: 488 VQFWHDIEQAAITTVET------RTPTQVGRIHLSYRSGCLFIALPSRRELCYPRPRLGE 541

Query: 576 NRSYL--------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
           NR  +        + TTR+     TYGGKLTEN+VQA +RD+L   M +   AG+ IV+ 
Sbjct: 542 NRFGMTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIVMH 601

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +HDEIV + P TD  +   +  LMT  P+WA GLPL A+GYE   Y K
Sbjct: 602 IHDEIVVDEP-TDGASVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648


>gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47]
 gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47]
 gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 653

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           132]
          Length = 653

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/706 (32%), Positives = 331/706 (46%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L      T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKV---ATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 653

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/706 (32%), Positives = 333/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
 gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
          Length = 653

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYIKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 653

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      V     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 653

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/706 (32%), Positives = 334/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYL---KRATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M +D R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCNDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P  D      +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPK-DSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
 gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
          Length = 653

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
          Length = 653

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224]
 gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224]
          Length = 653

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT++ +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
 gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
          Length = 653

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WA+GL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652


>gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A]
 gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A]
          Length = 650

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/703 (32%), Positives = 330/703 (46%), Gaps = 85/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P     + 
Sbjct: 1   MNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYET 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           +L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I 
Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T   +
Sbjct: 181 NKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E GL + +L + T Q  L      T +A ++   R++ S+++V K
Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKV---ATGKAKKMLEIRLQMSKTSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +    
Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354

Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
             D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N 
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV +                                         WR  +  +   W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577
               +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N   
Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547

Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEV 607

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916]
 gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916]
          Length = 653

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/706 (31%), Positives = 330/706 (46%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET   +D+   G  KY E     ++L A+ +DD PV++ D ++   +P+VL+
Sbjct: 1   MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60

Query: 59  EALEN--TDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +    + V   A N+ FER  +KA F  L      W CT+V A + GLPS+L  VG+A
Sbjct: 61  FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120

Query: 116 LKL--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           LK     QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V R
Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180

Query: 170 EIFKRLEPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           EI   L    +  KE+ELW LDQ INDRG  VD+ L     +  +  + +L +E  +LT 
Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLTG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             +++     +LK W+    G  +  LT+ +   ++  +K       ++   R   ++++
Sbjct: 241 --LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKN--VKKILELRQLMAKTS 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           + K  T++ A   D R+RG LQF GA+RTGRW+G +   QNLP+      E  + +    
Sbjct: 297 IKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNG 356

Query: 348 T------SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                     S PD L   S  +R+  I ++G + +VAD + IEARV+A++A EQW+L  
Sbjct: 357 DFETIEFLFDSIPDTL---SQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDV 413

Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F+ G D+Y  + ++ F V   +  +    RA GK+ ELALGY G   A +    T  +  
Sbjct: 414 FKEGGDIYCASASKMFKVPVEKHGINGHLRAKGKIAELALGYGGAGGAIRAFDKTGSIPD 473

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                        ++   WR+    +++
Sbjct: 474 ED-----------------------------------------LPKLVSDWRKASPHITQ 492

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR-- 577
            W  + +A ++ I     +          +    D   L + LPSGR L Y         
Sbjct: 493 FWWNVDKAAKKAITEKTTVALH-----HGIKFIYDPGVLFIQLPSGRKLSYLRPKIEEGK 547

Query: 578 --------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                     +  T++Q  R  TYG KL ENIVQA +RD LAE M    K G+ +V+ VH
Sbjct: 548 FGSDVITYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE+V +    +  +   +  +   +  WA GLPLKA+GYE   Y K
Sbjct: 608 DELVLDVSK-EIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652


>gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
          Length = 653

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 328/705 (46%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D      +P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL + +V  +A N+ FER  L     +   +   +W CT+V A   GLP++L    + L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   I 
Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+   E +L+ LDQ INDRG  +D  LA     I+         E+++LT   +
Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+  K
Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  +  + +       
Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +    +    +   +R+ ++A EG + +V+D + IEARV+AW A + W L  F T   
Sbjct: 356 GIELMYENVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLDVFRTHGK 415

Query: 408 LYVTTYARSFNVAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +Y  T A+ F++   +VT         KD R  GKV  LALGYQGG  A + M       
Sbjct: 416 IYEATAAQMFHL--GEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------ 467

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A+E+       + +   WR  + R+ 
Sbjct: 468 ----------------------------------ALENGIEEHELQDIVDRWRTANKRIK 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571
             W+E  +A    ++NG      +      +   K    L + LPSGR L Y        
Sbjct: 494 NFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKEG 548

Query: 572 DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           D G    Y     +   T + TYGGKL ENIVQA +RD+LAE M+   KAGY IV  VHD
Sbjct: 549 DYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E V E P+ ++ +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 609 EAVAEVPEGEK-SIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652


>gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
          Length = 653

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 653

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AE+  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
          Length = 653

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/705 (33%), Positives = 328/705 (46%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D      +P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL + +V  +A N+ FER  L     +   +   +W CT+V A   GLP++L    + L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   I 
Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+   E +L+ LDQ INDRG  +D  LA     I+         E++ LT   +
Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+  K
Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  +  + +       
Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +    D    +   +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T   
Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415

Query: 408 LYVTTYARSFNVAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +Y  T A+ F++   +VT         KD R  GKV  LALGYQGG  A + M       
Sbjct: 416 IYEATAAQMFHL--GEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------ 467

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A+E+       + +   WR  + R+ 
Sbjct: 468 ----------------------------------ALENGIEEHELQDIVDRWRTANKRIK 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571
             W+E  +A    ++NG      +      +   K    L + LPSGR L Y        
Sbjct: 494 NFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLEQG 548

Query: 572 DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           D G    Y     +   T + TYGGKL ENIVQA +RD+LAE M+   KAGY IV  VHD
Sbjct: 549 DYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E V E P+ ++ +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 609 EAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
 gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
          Length = 693

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/696 (35%), Positives = 379/696 (54%), Gaps = 32/696 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L++D ET S   +   G   YA +  ++L A+  DD PV + +      +P  L  AL +
Sbjct: 5   LWLDLETYSETPIRN-GTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALRD 63

Query: 64  TDVTIVAHNSYFERTVLKACF-NLDIP------IHRWICTLVLARSNGLPSALKAVGEAL 116
            +  + AHNS F+RTVL+    +   P      + RW  T+V A ++GLP +L  + + L
Sbjct: 64  GETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDIL 123

Query: 117 KLSSQKMEE--GKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ++  K ++  GK LI  FCK         R  K  H E W+ F +Y   D+   REI K
Sbjct: 124 GVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREIDK 183

Query: 174 RLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +L   + +  E  LW+ DQ INDRG  +D  LA      V++E+ +L    + LT   V 
Sbjct: 184 KLPVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEVQ 243

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++   + L   +    G+ L D+  +T QR +S    L  +  ++   R++AS ++  K 
Sbjct: 244 AATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSD-PDLPIELRELLAIRLQASTTSTSKY 302

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            TL++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP    E +D  I  L     
Sbjct: 303 KTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGCA 362

Query: 352 S--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----T 404
                + +++IS  +R C++A EGKKLVV+DL+ IE R L W++GE+WKL+AF      T
Sbjct: 363 DLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAGT 422

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G DLY+  YAR+FN++P  V K QR IGKVMEL LG+ GG  AF   A   GL+L+  A 
Sbjct: 423 GHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLAK 482

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
               N       +A+++ +   +    + + +  +  AC+ +K+ WR  H +    W E+
Sbjct: 483 AALPNVPASIQREAQSWYKASVKQKRTYGLSE-QVFIACDSLKRMWRNAHPKTVSFWYEI 541

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS-----Y 579
                + I   +     ++     + +++D + L + LPSGR++ Y  +  +        
Sbjct: 542 EDTVRRAIAAPRQTFTCRK-----LKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISYMG 596

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
           +N+ +R+  R  TYGGKLTEN+ QA +RD++A  M     +GY+I LTVHDE++ E PDT
Sbjct: 597 INSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPDT 656

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++F +  L  L+ +NP WA  LPL A G+E+  YRK
Sbjct: 657 EQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692


>gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2]
 gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 650

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/703 (33%), Positives = 331/703 (47%), Gaps = 85/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     + 
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           +L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I 
Sbjct: 121 RLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T   +
Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K
Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +    
Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354

Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
             D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N 
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV +                                         WR  +  +   W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577
               +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N   
Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547

Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      GY IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEV 607

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649


>gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
 gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
          Length = 650

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/703 (32%), Positives = 331/703 (47%), Gaps = 85/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     + 
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           +L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I 
Sbjct: 121 RLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T   +
Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K
Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +    
Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354

Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
             D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N 
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV +                                         WR  +  +   W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577
               +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N   
Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547

Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEV 607

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35]
 gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35]
          Length = 650

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/703 (33%), Positives = 334/703 (47%), Gaps = 85/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     + 
Sbjct: 1   MNIDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K AL + DV   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L
Sbjct: 61  FKIALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           +L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I 
Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T   +
Sbjct: 181 NKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K
Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +    
Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQR 354

Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
             D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N 
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV +                                         WR  +  +   W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577
               +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N   
Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E P  D      +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 IVEIPK-DSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 653

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AE+  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 653

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 333/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   + EG +L V+D + IEARV+AW A E+W+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
          Length = 653

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/705 (32%), Positives = 327/705 (46%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D      +P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL + +V  +A N+ FER  L     +   +   +W CT+V A   GLP++L    + L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   I 
Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+   E +L+ LDQ INDRG  +D  LA     I+         E+++LT   +
Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+  K
Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  +  + +       
Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +    D    +   +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T   
Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415

Query: 408 LYVTTYARSFNVAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +Y  T A+ F++   +VT         KD R  GKV  LALGYQGG  A + M       
Sbjct: 416 IYEATAAQMFHL--GEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------ 467

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A+E+       + +   WR  + R+ 
Sbjct: 468 ----------------------------------ALENGIEEHELQDIVDRWRTANKRIK 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571
             W+E  +A    ++NG      +      +   K    L + LPSGR L Y        
Sbjct: 494 NFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKEG 548

Query: 572 DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           D G    Y     +   T + TYGGKL ENIVQA +RD+LAE M    + GY IV  VHD
Sbjct: 549 DYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E V E P+ ++ +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 609 EAVAEVPEGEK-SIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A]
 gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A]
          Length = 653

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/705 (32%), Positives = 326/705 (46%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D      +P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL + +V  +A N+ FER  L     +   +   +W CT+V A   GLP++L    + L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   I 
Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+   E +L+ LDQ INDRG  +D  LA     I+         E++ LT   +
Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+  K
Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  +  + +       
Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +    D    +   +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T   
Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415

Query: 408 LYVTTYARSFNVAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +Y  T A+ F++   +VT         KD R  GKV  LALGYQGG  A + M       
Sbjct: 416 IYEATAAQMFHL--GEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------ 467

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A+E+       + +   WR  + R+ 
Sbjct: 468 ----------------------------------ALENGIEEHELQDIVDRWRTANKRIK 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571
             W+E  +A    ++NG      +      +   K    L + LPSGR L Y        
Sbjct: 494 NFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKEG 548

Query: 572 DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           D G    Y     +   T + TYGGKL ENIVQA +RD+LAE M    + GY IV  VHD
Sbjct: 549 DYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E V E P+ ++ +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 609 EAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
 gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
          Length = 653

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 333/706 (47%), Gaps = 85/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   + EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +R++LA  +     +G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 650

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/703 (32%), Positives = 331/703 (47%), Gaps = 85/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     + 
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           +L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I 
Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T   +
Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++V K
Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +    
Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354

Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
             D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N 
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV +                                         WR  +  +   W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577
               +A   T+++      RK      V     K  L++ LPSGR+L Y    VG N   
Sbjct: 494 KACQEAAINTVKS------RKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1]
 gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1]
 gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1]
 gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1]
          Length = 688

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/694 (39%), Positives = 383/694 (55%), Gaps = 26/694 (3%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+TLF+D ET   + +   G   YAE   V+LFA+  D+ PV +WD      MP  L+ A
Sbjct: 1   MSTLFLDLETYCEVPIQN-GTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59

Query: 61  LENTDVTIVAHNSYFERTVLKA-CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           L + +V + AHNS+F+RTVL+    +  + + RW  T+V A ++ LP AL  + + LK+ 
Sbjct: 60  LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119

Query: 120 SQKMEE--GKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           + K ++  GK+LI  FCK         R  +  H   W  F EY   D+   R I ++L 
Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179

Query: 177 PLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             + +  E  LW+LDQTINDRG  VD  LAH   + V+  +  L      +T G V ++ 
Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             + +   +    GL L D+ ++T +R ++    L  +  ++   R++AS ++  K  TL
Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIAD-PDLPAELRELLGIRLQASTTSTSKYKTL 298

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352
            + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP    + +++ I  L        
Sbjct: 299 AKGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLL 358

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GED 407
             + +++ S  +R C++A EGKKLVVADL+ IE R++AW+AGE WKL AF       G D
Sbjct: 359 FANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPD 418

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           LY   YA++F V+P  V KDQR IGKVMEL LGY+GG  AF   A+T G++L+  A    
Sbjct: 419 LYKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAW 478

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            +   +   +AE F  W  E               C+ +K+ WR+ H  VS  W EL +A
Sbjct: 479 PSIPADIIAEAEQFLAWRTEQRLGDFGLKPKTFVVCDALKRLWRRAHPAVSSFWKELEEA 538

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYL--N 581
               +     +      D   +  ++D   L + LPSGR L Y     D     SY+  N
Sbjct: 539 ARLAV-----LRPGTTYDCRTLKARRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGVN 593

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
             +R+ +R  TYGGKL EN+ QA SRD+LA  M     AGY IVL+VHDE + E  D DE
Sbjct: 594 QYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRDE 653

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           F+A+ L  LM +NP WA GLPL A G+E+ RYRK
Sbjct: 654 FSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687


>gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
 gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
          Length = 650

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/703 (32%), Positives = 331/703 (47%), Gaps = 85/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     + 
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           +L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I 
Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T   +
Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++V K
Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +    
Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354

Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
             D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N 
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV +                                         WR  +  +   W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577
               +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N   
Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31]
 gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31]
          Length = 656

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/704 (31%), Positives = 322/704 (45%), Gaps = 78/704 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G  KYA  +D  ++LFA+  D   V++ D      +P  + 
Sbjct: 1   MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L++      A+N+ FE   L     ++ P+ +W CT+V     G  + L A+G A+ L
Sbjct: 61  DLLKDETCIKYAYNAVFEWWCLN-MAGIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119

Query: 119 SSQK--MEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
              K  +  G  LI  FC             RN P+H  E W LF EYC  DV    EI 
Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVVTEMEIG 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+  +E +LW LD  +N  G  VD  L +    I  + R  L +E   +T   +
Sbjct: 180 RRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDITK--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E G  +E+L + T  +++ +      +A +V   R   S+++V K
Sbjct: 238 DNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDD--GKAKRVLEIRQELSKTSVKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              + EAM  D R+RG LQF GA+RTGR++G +   QNLPR      ++ + +       
Sbjct: 295 YKAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIKKGDGE 354

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +    +    +S  +R+  I SEG   VV+D + IEARV+AW+AGE+W+++ F+T   
Sbjct: 355 LLEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVFKTHGK 414

Query: 408 LYVTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNT 461
           +Y  + ++ F V    + K       RA GKV ELALGYQG   A   M A+  GL    
Sbjct: 415 IYEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAADMGLTDEE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                       +   WR+   R+ ELW
Sbjct: 475 MKD-----------------------------------------IVDRWRKSSKRIVELW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---- 577
             L  A  + +E G+  I +  +          ++   + LPSGR L Y           
Sbjct: 494 YALENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFLKENQFG 553

Query: 578 ------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                   +N TT++     TYGGKLTENIVQA++RD LAE ++     G+ IV  VHDE
Sbjct: 554 QMQMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIVFHVHDE 613

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           I+ + P +       +   MT   SWAKGL L A G+    Y K
Sbjct: 614 IILDVPKS--VELEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655


>gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11]
          Length = 650

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/703 (32%), Positives = 330/703 (46%), Gaps = 85/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     + 
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYET 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           +L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I 
Sbjct: 121 RLQSQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMTIA 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +++  P++  EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T   +
Sbjct: 181 NKIKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K
Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +    
Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354

Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
             D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N 
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV +                                         WR  +  +   W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577
               +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N   
Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     + + IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEV 607

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL]
 gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL]
          Length = 650

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/703 (32%), Positives = 331/703 (47%), Gaps = 85/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     + 
Sbjct: 1   MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L
Sbjct: 61  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
           +L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I 
Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T   +
Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  + GL + +L + T Q  L   K+ T +A ++   R++ S+++V K
Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +    
Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354

Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
             D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T
Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
              +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N 
Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV +                                         WR  +  +   W
Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577
               +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N   
Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547

Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE+
Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649


>gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1]
          Length = 658

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 211/713 (29%), Positives = 310/713 (43%), Gaps = 94/713 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M T+ ID ETRS  D+TKCG+  YA+     + L +   DD  V+L+D  +   +P+ + 
Sbjct: 1   MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100
            AL +  V   A N  FER  L      + P                     W CT++  
Sbjct: 61  TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDRNKP-NHREAWRLFG 158
           R+ GL S L + G ALKL  QKM EGK LI  FC   +T + +   + P +  E W  F 
Sbjct: 121 RTLGLSSTLASAGAALKLEQQKMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWETFK 180

Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            Y K DV     I +RL   P+     E +YLDQ INDRG  VD+ L      +    + 
Sbjct: 181 AYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQAKA 240

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L  E+  LT   + +   + +L  WL  E G   + L +   + +L + K        V
Sbjct: 241 TLSSEMRRLTG--IENPNSVYQLLEWLG-EQGYKSDCLDKAAVKELLKTVKDP---VKSV 294

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R+  S+S+V K   +  A  SD R RG   F GASRTGRW+G +   QNLP+     
Sbjct: 295 LELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIPD 354

Query: 337 EELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +           +    D    +S  +R+  +   G K ++AD + IEARV+AW+A
Sbjct: 355 LTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIAWLA 414

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKM 451
           GE+W++ AF  G D+Y  + ++ F V   +  V  + R  GKV ELA GY G   A + M
Sbjct: 415 GEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAMKAM 474

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LNL+                                        +  +++   WR
Sbjct: 475 GGDA-LNLSD---------------------------------------SELKQIVTDWR 494

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570
                + + W  +  A ++ I+           +   +        L + LPSGR L Y 
Sbjct: 495 DASPNIVKFWWTVDDAVKKAIKQKIT------TETHGLQFSYQSKMLFITLPSGRKLCYA 548

Query: 571 -RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              +G N+    + T       ++  R  +YG K  ENIVQAV+RD+L   M        
Sbjct: 549 HPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQTM--RCC 606

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV  +HDE++ E       +   +   M   P+WA+GL L+A+GYE + YRK
Sbjct: 607 FIVGHIHDEMIIEADR--RMSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657


>gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 658

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 211/694 (30%), Positives = 314/694 (45%), Gaps = 76/694 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            +L +D ET S ++L++CG+ +Y +D    ++L ++  DD  V   D      +P  +  
Sbjct: 20  KSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVA 79

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           AL++  V   A+N+ FERT L A     +    W CT+V A + GLP +LK VG  L L+
Sbjct: 80  ALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLA 139

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKRL--E 176
            QK+ EGK+LI  F           R++P+    AW LF +Y   DV V   I ++L   
Sbjct: 140 HQKLAEGKDLIKYFSLPTKTGI---RHQPSDDSAAWALFKQYNARDVEVETTIRRKLSHH 196

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           P+  +    + +DQ INDRG  +D  LA          R +     + LT   + +    
Sbjct: 197 PVPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LDNPASP 254

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            +L++WL  E G  +  + +      L +    T    +    R   S+S+V K   + +
Sbjct: 255 LQLQSWL-AEQGCKISSMAKEDVDSALDT---ATGSVREALELRQDLSKSSVAKYRKMAD 310

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--- 353
           A  +DGR  G LQF GASRTGRW+G +   QNLPR         + + H       +   
Sbjct: 311 ATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLY 370

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           P     +S  +R+  I SE  + +VAD + IEARVLAW+AGE+  L AF  GEDLY  T 
Sbjct: 371 PSVPDTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCATA 430

Query: 414 ARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNS 470
           +  F V   +     + R  GK+  LA GY G   A + M +   GL  +          
Sbjct: 431 SAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMGALKMGLTASELQ------- 483

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                              +  AWR  +  +  +W+++ Q   Q
Sbjct: 484 ----------------------------------PIVDAWRAANPNIVAMWHDVDQTAIQ 509

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN--NRSYLNTTT---- 584
            I     +       +  +     K  L + LPSGR L Y   G   NR    + T    
Sbjct: 510 AITTRSTVT------LGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYWGQ 563

Query: 585 ---RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
              R+  +  TYGGKL ENIVQA +RD+LAE +     AG+++V+ +HDE+V +      
Sbjct: 564 GINRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKDSG 623

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              + +  LM   P+WA GLP+ A GY+   Y K
Sbjct: 624 TTVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657


>gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 273/725 (37%), Positives = 371/725 (51%), Gaps = 63/725 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     +P  L  AL +
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  +DIP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PGVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL     
Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  +D  L     + V+  +  L Q  E+LT G V ++   + 
Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L    G+ L D+ + T  R +     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVDDPA-LPETVRELLSIRRQASSTSTAKYQALLHCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D 
Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET------------ 404
           + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF              
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCWH 427

Query: 405 ----------------------------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       G+D+Y   YA SF +AP  V+K+QR IGKV E
Sbjct: 428 TGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
           LALGY GG  AF   A+   ++L   A   +    P   ++A     W + NH       
Sbjct: 488 LALGYGGGVGAFAAFAALYHIDLEAMAA--QAVFPPLLLQEATELLEWTKANHRPTFDLS 545

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                AC+  K+AWR  H  ++  W  L  A    I + +            + ++  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPET-----THTCCGITVQYRRA 600

Query: 557 NLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDIL 610
            L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+L
Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVL 660

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
           A  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+++
Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDT 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 YRYRK 725


>gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 651

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 215/699 (30%), Positives = 329/699 (47%), Gaps = 80/699 (11%)

Query: 8   FETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            ET S +DL  CG+ KY  +ED  ++LFA+  DD PV++ D      +P  + + ++   
Sbjct: 1   METYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPA 60

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SSQKM 123
           +   AHN+ FER  L       +   +W C+++ A   GLP++LK VG  L L    QKM
Sbjct: 61  IIKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKM 120

Query: 124 EEGKELIARFCKGETH---ECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE--P 177
             GK LI+ FCK            RN P +  E W+LF +YC  DV   REI  +L+  P
Sbjct: 121 RIGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFP 180

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           + + E ELW  DQ +ND G  +D+ + HT+         +L  E E +T G+    + + 
Sbjct: 181 IPASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNGI--GPKKIA 238

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +LK W+  +    +E L +     +L     ++P+  +V   R  + ++++ K   +  +
Sbjct: 239 QLKEWICRKEDRSIESLDKDAVIELLKD-SSISPETRRVLQIRQESGKTSITKYAAIQRS 297

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD---P 354
           + +D RL G LQF GA+RTGRW+G +F PQNLPR + +  EL + +       + D    
Sbjct: 298 VCNDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYG 357

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
              Q+ S  +R+ VI   G    +AD + IEAR+ AW   E+W+ + F T   +Y  + A
Sbjct: 358 SYNQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAA 417

Query: 415 RSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNTFAHLVKTNSA 471
           + F+V    VTK  D R  GKV ELALGY GG  A ++M  +  GL+ +           
Sbjct: 418 QMFHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMGGADMGLSEDEMQD------- 470

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                             +   WR     + ++W  +  A    
Sbjct: 471 ----------------------------------IVNKWRLASPNIKKMWYRVQDAAYTA 496

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------GNNRSYLNT-- 582
           +   K +       V  V        L   LPSGR L Y          G+  +Y     
Sbjct: 497 VRERKRVSV-----VHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGS 551

Query: 583 -----TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                 T++  R+ T+GGKL EN++QA++RD LA+ M+     GY I++ +HDE+V E P
Sbjct: 552 DQDGKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVP 611

Query: 638 -DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +T E     +  +M     WA GL L A+G+ S+ YRK
Sbjct: 612 SETAESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650


>gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9]
 gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9]
          Length = 640

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 224/696 (32%), Positives = 330/696 (47%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL+++T   +
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           ++     +L  WL  E G     LT+   ++ L + +    +  +V   +++ + S++ K
Sbjct: 237 ANPNSRAQLLPWL-KEHGYSANGLTKADVEQELKTAEG---ELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +         
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +         +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +   T + TYGGKL ENIVQA +RDILAE ++    AGY +V  VHDE + E    
Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 273/725 (37%), Positives = 371/725 (51%), Gaps = 63/725 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     +P  L  AL +
Sbjct: 11  LWGDLETYSPVPMA-HGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  +DIP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL     
Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  +D  L     + V+  +  L Q  E+LT G V ++   + 
Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L    G+ L D+ + T  R +     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVDDPA-LPETVRELLSIRRQASSTSTAKYQALLHCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D 
Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET------------ 404
           + + S  +RSC+IA + KKLVVADL+ IE RVLAW+AGE  KL AF              
Sbjct: 368 MALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTWH 427

Query: 405 ----------------------------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       G+D+Y   YA SF +AP  V+K+QR IGKV E
Sbjct: 428 TGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
           LALGY GG  AF   A+   ++L   A   +    P   + A     W + NH       
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAA--QAALPPLLLQQATELLEWTKANHRPTFDLS 545

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                AC+  K+AWR  H  ++  W  L  A    I + +            + ++  + 
Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETA-----HTCCGITVQYRRA 600

Query: 557 NLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDIL 610
            L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+L
Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVL 660

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
           A  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+++
Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDT 720

Query: 671 KRYRK 675
            RYRK
Sbjct: 721 YRYRK 725


>gi|139473888|ref|YP_001128604.1| phage DNA polymerase [Streptococcus pyogenes str. Manfredo]
 gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2]
 gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2]
          Length = 640

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 224/696 (32%), Positives = 329/696 (47%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E G  +  LT+   ++ L + +    +  +V   +++ + S++ K
Sbjct: 237 DNPNSRAQLLPWL-KEHGYSVNGLTKADVEQELKTAEG---ELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +         
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +         +   VR+ ++A +     V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +   T + TYGGKL ENIVQA +RDILAE ++    AGY +V  VHDE + E    
Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047]
 gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047]
          Length = 640

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 224/696 (32%), Positives = 328/696 (47%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           KL  +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLVQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E G  +  LT+   ++ L + +    +  +V   +++ + S++ K
Sbjct: 237 DNPNSRAQLLPWL-KEHGYSVNGLTKADVEQELKTAEG---ELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +         
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +         +   VR+ ++A +     V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +   T + TYGGKL ENIVQA +RDILAE ++    AGY +V  VHDE + E    
Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
 gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
          Length = 640

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 226/696 (32%), Positives = 328/696 (47%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLP++L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H    W++F  YC  DV V   I 
Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E G     LT+   ++     KK   +  +V   +++ + S++ K
Sbjct: 237 DNPNSRAQLLPWL-KEHGYSANGLTKADVEQ---ELKKAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +         
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +         +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + V   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGVVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K      +  +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGK------IRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               R   T + TYGGKL ENIVQA +RDILAE ++    AGYD+V  VHDE + E    
Sbjct: 547 GQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM+  P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
 gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
          Length = 640

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 225/696 (32%), Positives = 327/696 (46%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLP++L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H    W++F  YC  DV V   I 
Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E G     LT+   ++     KK   +  +V   +++ + S++ K
Sbjct: 237 DNPNSRAQLLPWL-KEHGYSANGLTKADVEQ---ELKKAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +         
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +         +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K      +  +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGK------IRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               R   T + TYGGKL ENIVQA +RDILAE ++    AGYD+V  VHDE + E    
Sbjct: 547 GQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes
           MGAS315]
 gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage
           315.6]
 gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 640

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 222/696 (31%), Positives = 328/696 (47%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E G     LT+   ++ L + +    +  +V   +++ + S++ K
Sbjct: 237 DNPNSRTQLLPWL-KEHGYSASGLTKADVEKELKTAEG---ELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SDGR+ G LQF GASRTGRW+G V   QNL R      +  +         
Sbjct: 293 YEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +         +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   +   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPVRLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +   T + TYGGKL ENIVQA +RDILAE ++    AG+ +V  VHDE + E    
Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639


>gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 726

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 218/697 (31%), Positives = 337/697 (48%), Gaps = 73/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET S  ++   G+  Y +  +  ++LFA+  D   V+L D      +P  + 
Sbjct: 80  IKILSIDIETYSDNEI-TNGVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL ++++   A N+ FER  +     L +   +W CT + A   GLP++L++ GE LKL
Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             +K+ EG ELI  F   CK         RN P H  + W  F  YC  DV V + I ++
Sbjct: 199 KHKKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQRK 258

Query: 175 -----LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                L P++  E+ L+  DQT+ND+G C+D  LA+   ++ D  + +L  E++ +T   
Sbjct: 259 VCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN-- 316

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           + +     +LK WL  + G  ++ L +   + + +     +    +V   R  +S+++V 
Sbjct: 317 LENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELAT---GASEDVKRVLYLRSMSSKTSVK 373

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---L 346
           K   +  A  SD +L   LQF GA +TGRW+G +    NLPR S     L + +      
Sbjct: 374 KYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKNDF 432

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                +  +   I+S  +R+  IA E   L V D + IEARV+AW+AGE+W+LK F    
Sbjct: 433 ELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGSG 492

Query: 407 DLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + AR F V    +T D   R  GK+ ELALGY+GGA A + M +           
Sbjct: 493 RIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGAD---------- 542

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                               M  + PE A           ++   WR     + +LW ++
Sbjct: 543 -------------------KMGLSDPEIA-----------QIVSGWRNSSPNIVKLWRDV 572

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR---DVGNNRSYL- 580
            +A ++ I + + I  ++      +  +K  N L + LPSGR L Y     V N   Y+ 
Sbjct: 573 ERAAKEAILSDRIIKLKQ----GGLIFRKTSNILQIKLPSGRLLSYPLAKIVDNKICYMS 628

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N TTRQ     TYGGKL ENIVQA++RD L E ++   K GY+I   VHDEI+ E P  
Sbjct: 629 QNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPTD 688

Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +   A   + ++  +  ++A  LPLK EGY +  Y K
Sbjct: 689 ESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725


>gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 223/707 (31%), Positives = 328/707 (46%), Gaps = 82/707 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQ----V 56
           T+ +D ET S ID+ + G+  YA   D  ++L  + +D   V++ D       P+     
Sbjct: 2   TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             E L + DV   A+N+ FERT L +     +P  +W CT V A + GLP  L  VGEAL
Sbjct: 62  FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121

Query: 117 KLS--SQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L    QK + GK LI  FCK         +  RN P H  + W+LF EY + DV     
Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++L+  P++ +EQELW LDQ IND G  +D+ LA  + Q   + + +L QE   LT  
Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLTG- 240

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV---LSSNKKLTPQA--IQVFNNRMRA 283
            +++   L +LK W F+  GL +  +T+ +   +   L   K        +++   R   
Sbjct: 241 -LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIRKEL 299

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +++V K   +  A+  DG LRG LQF GA+RTGRW+G +    NLP+      +L + +
Sbjct: 300 GKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLARDL 359

Query: 344 THLPTSITSDPDPLQII---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                  T +     I    S  +R+  I SEG + VV+D + IEARV+AW+A E+W+L 
Sbjct: 360 VKQEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWRLN 419

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            F T   +Y  + A+ F+V    + K    R  GKV ELALGY GG  A + M     + 
Sbjct: 420 VFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMDKAGTIP 479

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +                                             +   WR+    + 
Sbjct: 480 DDE-----------------------------------------IPMIIANWRKASPNIC 498

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +LW     A    IE  + I  +       +        L + LPSGR L Y D      
Sbjct: 499 KLWRNAEAAARAAIEERRTIKLK-----HGLSFSYINRILFIGLPSGRKLAYYDTRIEDD 553

Query: 579 ----------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                      ++  T++  R  T+GGKL ENIVQA +RD LA  M   + AGY IV+ V
Sbjct: 554 EKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQIVMHV 613

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDEI+ + P+TD      +  +M     WA+ LPL+ +GYE+  Y+K
Sbjct: 614 HDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660


>gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/726 (38%), Positives = 375/726 (51%), Gaps = 65/726 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  +DIP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L  E G+ L D+ + T +R L     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +          D 
Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402
           + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF              
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWH 427

Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       G+D+Y   YA SF +AP  VTK+QR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIE 495
           LALGY GG  AF   A+   ++L   A   +    P   ++A    +W + N  P   + 
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLS 545

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I + +            + M+  +
Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSR 599

Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG++
Sbjct: 660 LAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
 gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 214/704 (30%), Positives = 310/704 (44%), Gaps = 78/704 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ETRS ID+ K G  KYA+  D  ++LFA+ +++ PV++ D  +   +P  L 
Sbjct: 1   MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL + +V   A+N+ FE   L  C   + PI +W CT+      G  + L A G+A+ L
Sbjct: 61  QALADPNVIKHAYNAAFEWYCLN-CAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119

Query: 119 S--SQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QK+  GK LI  FC   K          N+P H  + W LF EYC  DV   REI 
Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           KRL+  P+  +E+ LW +D  +N  G  VD  L      I  +   +L  E  SLT   +
Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  + G   ++L + T   +L        +  ++   R +  ++++ K
Sbjct: 238 QNPNSAAQLLQWL-RDNGTEADNLQKATVAELLGGIN--PNKVRRMLEIRQQLGKTSIKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A     R+RG  Q+ GA+RTGRW+G +   QNLPR      +  + +       
Sbjct: 295 YVAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNYD 354

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +    +S  +R+  I S G K VVAD + IEARV+AW+AGEQW  + F T   
Sbjct: 355 GVRILYGNVPDTLSQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVNEVFATHGK 414

Query: 408 LYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
           +Y  T ++ F V   ++ K       R  GKV  LALGYQGG  A   M +   GL    
Sbjct: 415 IYEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMGALQMGLTEEE 474

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                       + + WRQ + R+  LW
Sbjct: 475 LPD-----------------------------------------IVQRWRQANPRIKGLW 493

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--GNNRS- 578
             +  A    +E  +              +   ++ L + LPSGR L Y       NR  
Sbjct: 494 YAIENAALAVMETAQPQGINGLIFALEGDIIYGQSFLTVRLPSGRKLFYPKPFLKENRFE 553

Query: 579 -------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                   +   TR+     TYGGK+ ENIVQA++RD LA  +      G  +V  VHDE
Sbjct: 554 KMAVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKGLQVVFHVHDE 613

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ + P   E     +  LM     WA GL LK  G+ES  Y K
Sbjct: 614 VIIDAP--METTVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655


>gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
 gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
          Length = 656

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 201/701 (28%), Positives = 306/701 (43%), Gaps = 72/701 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +D+ K G+ KY E     ++LFA+ +D   V + D      +P  + 
Sbjct: 1   MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L N +V   A+N+ FE T L           +W CT++     G P+ L  +G AL +
Sbjct: 61  SDLNNPEVIKHAYNASFEITGLNRY-GYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119

Query: 119 SSQK--MEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
              K  +  GK LI  FC   K         RN P H  + W LF EY   DV    E +
Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+    Q+ W +D  +N RG  +D+ L      I D  +T+L ++   +T   +
Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           ++     +L TW+   + L LE LT+ T    L   +    + + +   R   ++S++ K
Sbjct: 238 TNPNSRNQLLTWINDNSDLKLEKLTKETVAESLQIAEDQVAEVLHI---RRALAKSSISK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
             ++  A+ +DGR+RG LQF GA+RTGRW+G +   QNLP       +    +     + 
Sbjct: 295 YESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHDVPVAMDTAIRLVKNGNAR 354

Query: 351 TSDPDPLQI---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                   I   +S  +R+  +A EG  L V+D + IEARVL+W+A E+W+   F  G D
Sbjct: 355 GVKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKWRQDVFAKGGD 414

Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + +  F V   +  +    R  GKV ELALGYQGG  A   M              
Sbjct: 415 IYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMG------------- 461

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A++          +   WR  + R+   W ++ 
Sbjct: 462 ---------------------------ALKQGLTEDELPDIVHRWRGANPRICGFWYDVD 494

Query: 526 QAFEQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS------ 578
            A    + + + +       +     +    + L + LPSGR L Y     N +      
Sbjct: 495 GAALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYPQPYINENQFGKPA 554

Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
             Y      + +   TYGGKL ENI QA++RD LA  +    KAGY  ++ +HDE+V E 
Sbjct: 555 LHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYKPLMHIHDEVVLEV 614

Query: 637 PDTD--EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P     E     +  +M +   WA GL L A+G+ S  Y K
Sbjct: 615 PKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655


>gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 726

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/726 (38%), Positives = 375/726 (51%), Gaps = 65/726 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  +DIP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E  LW+LDQTINDRG  VD  LA      V+  +  L    E+LT G V ++   + 
Sbjct: 189 SGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L  E G+ L D+ + T +R L     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +          D 
Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402
           + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF              
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427

Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       G+D+Y   YA SF +AP  VTK+QR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIE 495
           LALGY GG  AF   A+   ++L   A   +    P   ++A    +W + N  P   + 
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLS 545

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDE++ E  D   FNA+ L  LM + P WA+GLPL AEG++
Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 280/726 (38%), Positives = 375/726 (51%), Gaps = 65/726 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   D PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  ++IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F +Y + DV   R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L  E G+ L D+ + T +R L     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D 
Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402
           + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF              
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427

Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       G+D+Y   YA SF +AP  VTK QR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495
           LALGY GG  AF   A+   ++L   A   +    P   ++A     W + NH P   + 
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAA--QAALPPLLLQEATELLEWTKANHRPTFGLS 545

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/726 (38%), Positives = 374/726 (51%), Gaps = 65/726 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE    +LFA+   D PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  ++IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F +Y + DV   R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L    G+ L D+ + T +R L     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +          D 
Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402
           + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL+AF              
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWH 427

Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       GED+Y   YA SF +AP  VTK QR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495
           LALGY GG  AF   A+   ++L   A   +    P   ++A    +W + NH P   + 
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANHRPTFGLS 545

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 277/726 (38%), Positives = 373/726 (51%), Gaps = 65/726 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   D PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  ++IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F +Y + DVT  R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L  E G+ L D+ + T +R L     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +  P NLPRP+ S   +   I  +          D 
Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402
           + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF              
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427

Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       G+D+Y   YA SF +AP  VTK QR IGKV E
Sbjct: 428 SGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIE 495
           LALGY GG  AF   A+   ++L   A   +    P   + A    +W + N  P   + 
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQQAMEALQWTKANQRPTFGLS 545

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53]
 gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53]
          Length = 726

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 280/726 (38%), Positives = 373/726 (51%), Gaps = 65/726 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+     PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  + IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DVT  R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L    G+ L D+ + T +R L     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D 
Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402
           + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF              
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWH 427

Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       G+D+Y   YA SF +AP  VTK QR IGKV E
Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495
           LALGY GG  AF   A+   ++L   A   +    P   ++A     W + NH P   + 
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAA--QAALPPLLLQEATELLEWTKANHRPTFGLS 545

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
 gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 726

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 280/726 (38%), Positives = 374/726 (51%), Gaps = 65/726 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  + IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F EY + DVT  R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L    G+ L D+ + T +R L     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D 
Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402
           + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF              
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWH 427

Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       G+D+Y   YA SF +AP  VTK QR IGKV E
Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495
           LALGY GG  AF   A+   ++L   A   +    P   ++A     W + NH P   + 
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAA--QAALPPLLLQEATELLEWTKANHRPTFGLS 545

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
 gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
          Length = 668

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 214/709 (30%), Positives = 306/709 (43%), Gaps = 82/709 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVL-KE 59
            L ID ETRS +D++K G  +YA+  D  ++LFA+ +DD PVE+ D   D   P  + +E
Sbjct: 5   HLSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEE 64

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           AL + DV   A+N+ FE   L        P+ +W CT+      G  + L A G+A+ L 
Sbjct: 65  ALRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLP 123

Query: 120 --SQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFK 173
              QK+  GK LI  FC   K          N+P H  + W LF EYC+ DV    EI +
Sbjct: 124 QDKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEILR 183

Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           RL   P+   E+ LW LD  +N  G  VD  L      + +V   KL  E   LT   + 
Sbjct: 184 RLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELTG--LD 241

Query: 232 SSRCLEKLKTWLFLETGLHLED------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           +     +L  W+      H +D      L + T +  L     L     ++   R +  +
Sbjct: 242 NPNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLGK 301

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           ++V K   +  A     R+RG  Q+ GA+RTGRW+G +   QNLPR      +  + +  
Sbjct: 302 TSVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELVK 361

Query: 346 LPT---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                       +    +S  +R+  I SEG K VVAD + IEAR +AW+AGEQW  + F
Sbjct: 362 AKNYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQWVNEVF 421

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTG 456
            T   +Y  T A+ F V   ++TK       R  GKV  LALGYQG   A   M +   G
Sbjct: 422 ATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAMGALKMG 481

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L  +                                             +   WR  + R
Sbjct: 482 LTEDELPD-----------------------------------------IVTRWRNANKR 500

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--G 574
           +  LW  +     + ++  +              +   ++ L + LPSGR L Y      
Sbjct: 501 ICGLWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYYPKPFLQ 560

Query: 575 NNRS--------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
            NR          +   TR+   + TYGGK+TENIVQA++RD LA  +    + G   V 
Sbjct: 561 ENRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQKGLQTVF 620

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            VHDE++ + P   E     +  LM     WA GL LK  G+ES  Y K
Sbjct: 621 HVHDEVIIDAP--METTVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667


>gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
 gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
          Length = 644

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 224/694 (32%), Positives = 319/694 (45%), Gaps = 75/694 (10%)

Query: 4   LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S   + K G  +Y +D    ++LFA+ FDD PVE+ D   DP +P+ + +AL
Sbjct: 3   LSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMTKDP-LPERVVDAL 60

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N ++T  A N+ FE   LK  F  D     W CT VLA    LP++L  V +AL+L   
Sbjct: 61  YNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGEA 119

Query: 122 KMEEGKELIARFCKGE--THECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLEPL 178
           K   GK LI  F      T      RN P    E W  + EY + DV V R I KRL  L
Sbjct: 120 KDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRLLSL 179

Query: 179 --SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E E W LDQ IN RG  VD+ L        D    +  +  + LT   + +    
Sbjct: 180 KPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATESSKILTG--LENPNST 237

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            +LK WL    G  LE + +     +L+  + +     +V  NR     S++ K   +  
Sbjct: 238 MQLKEWLTARLGYDLETMRKDDVSNLLA--QDIPSDVRKVLQNRQVLGNSSIKKYLAMKN 295

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTSITSD 353
           A+ SDGR+ G LQF GA R+GRW+G V   QNLPR      +  + +     +       
Sbjct: 296 AVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEMLDLLY 355

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
            +P  +I   +R+ ++A +G + +VAD + IEARV+AW+A E+W+   F  G D+Y  + 
Sbjct: 356 GNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIYCASA 415

Query: 414 ARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           +  F+V   +  V    R  GKV ELALGY GG  A + M S   +       +++    
Sbjct: 416 SSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKGEIPEKELPGIIEA--- 472

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                 WRQ   R+++ W +   A +Q 
Sbjct: 473 --------------------------------------WRQASPRITKFWKDADSAAKQV 494

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRS--------YLN 581
           +  G+ +    R     +   K K  L + LPSGR L Y    +G N+          ++
Sbjct: 495 VRTGEPV----RIIQGNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYDGMD 550

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
                  R  TYGGKL ENIVQAV+RD LA  M+  +KAGY IV  +HDE+V E P    
Sbjct: 551 QVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAPIGV- 609

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +   +  +M     W +GL L A G+E+  Y K
Sbjct: 610 GSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643


>gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G]
          Length = 726

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 253/730 (34%), Positives = 355/730 (48%), Gaps = 59/730 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M+ LF+DFET S  DL K G   YAE     V++  + FDD PV++WDC +   MP  L 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            AL      N+ + +V HN S F+R ++K C+  DIP+   I T++ A  + LP +L A+
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +S+   K + GK LI RF K         R     H + W LF +Y   D+T  R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+F +L     S  E  +  LDQ INDRG+ VDVALA    + V+  + +L +E +    
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+    L     + +  ++T   +L+ +      A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346
             K N L+   +SD R RG +Q+ GA RT R++G  F PQNL R     +ELD+ I+ L 
Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           D+Y  T  + F + P  + K++   R IGK  EL LGY GG  AF + A   GL+L   A
Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476

Query: 464 HLVKTNSAPEEW------------EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
             +        W            ++A+   R  + +     I D  +   C+ +K+ WR
Sbjct: 477 KTMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN--------NLILMLP 563
           + H      W ++  A    I N         R V      +  N         L + LP
Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596

Query: 564 SGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTYGGKLTENIVQAV 605
           SGR + Y  VG + S                    N  TRQ   +YTY GKL EN  QA+
Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            RD+LA  ++N    GY IVL VHDEI+CETPD  E+N + L  LM   P WA+G PL A
Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716

Query: 666 EGYESKRYRK 675
           EG E KRY K
Sbjct: 717 EGAEMKRYAK 726


>gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H]
          Length = 726

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/730 (34%), Positives = 354/730 (48%), Gaps = 59/730 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M+ LF+DFET S  DL K G   YAE     V++  + FDD PV++WDC +   MP  L 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            AL      N+ + +V HN S F+R ++K C+  DIP+   I T++ A  + LP +L A+
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +S+   K + GK LI RF K         R     H + W LF +Y   D+T  R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+F +L     S  E  +  LDQ INDRG+ VDVALA    + V+  + +L +E +    
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+    L     + +  ++T   +L+ +      A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346
             K N L+   +SD R RG +Q+ GA RT R++G  F PQNL R     +ELD+ I+ L 
Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           D+Y  T  + F + P  + K++   R IGK  EL LGY GG  AF + A   GL+L    
Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMT 476

Query: 464 HLVKTNSAPEEW------------EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
             +        W            ++A+   R  + +     I D  +   C+ +K+ WR
Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN--------NLILMLP 563
           + H      W ++  A    I N         R V      +  N         L + LP
Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596

Query: 564 SGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTYGGKLTENIVQAV 605
           SGR + Y  VG + S                    N  TRQ   +YTY GKL EN  QA+
Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            RD+LA  ++N    GY IVL VHDEI+CETPD  E+N + L  LM   P WA+G PL A
Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716

Query: 666 EGYESKRYRK 675
           EG E KRY K
Sbjct: 717 EGAEMKRYAK 726


>gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 669

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 247/675 (36%), Positives = 364/675 (53%), Gaps = 37/675 (5%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN--LDI 88
           ++  +  +D PV  WD      MP+ LK  L++  + I A NS+F+RT+++      +  
Sbjct: 1   MIITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRHDMPSVIAG 60

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHECLYDR- 145
            I RW  T+V A ++GLP  L  + E L ++  K   +EGK LI  FCK         R 
Sbjct: 61  GIERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTIHRA 120

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS--KEQELWYLDQTINDRGYCVDVAL 203
               H E W+ F +Y   D+   R I K+L   +   KE  LW+ DQ INDRG  +D  L
Sbjct: 121 TSKTHPEEWKRFLKYAGNDIEAMRAIDKKLPVWNYQGKELALWHFDQLINDRGVQMDTVL 180

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
           A      V  E+  L +  ++LT   V ++   + L   +    G+ L D+ ++T +R +
Sbjct: 181 AEAAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTLERRI 240

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
           +   +L     ++   R++AS ++  K  TL++ ++ DGRLRGTLQF GASRTGRW+G +
Sbjct: 241 AD-PELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRL 299

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADL 381
           F PQNLPRP    E +D  I  L          + +++IS  +R C++A +GKKLVV+DL
Sbjct: 300 FQPQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVVSDL 359

Query: 382 AGIEARVLAWMAGEQWKLKAFE----------------TGEDLYVTTYARSFNVAPAQVT 425
           + IE RVLAW+AGE+WKL+AF                  G DLY   YAR+FN++P  VT
Sbjct: 360 SNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPDDVT 419

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           K QR IGKVMEL LG+ GG  AF   A   GL+L+  A+    N       +A+++ +  
Sbjct: 420 KLQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWYQAS 479

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +      + +  +  AC+ +K+ WR  H      W+E+     + I N K     ++  
Sbjct: 480 VKQKRTFGLSE-QVFIACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPKQTFVCRK-- 536

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTEN 600
              + +++D + L + LPSGRS+ Y  +   G+  SY+  NT +R+  R  TYGGKL EN
Sbjct: 537 ---LKIRRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAEN 593

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
             QA +RD++A  M      GY+I LTVHDE++ E PDTD F +  L  L+ +NP WA  
Sbjct: 594 ATQAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALD 653

Query: 661 LPLKAEGYESKRYRK 675
           LPL A G+E+  YRK
Sbjct: 654 LPLSAGGFEAYHYRK 668


>gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3]
 gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2]
          Length = 726

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 252/730 (34%), Positives = 354/730 (48%), Gaps = 59/730 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M+ LF+DFET S  DL K G   YAE     V++  + FDD  V++WDC     MP  L 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            AL      N+ + +V HN S F+R ++K C+  DIP+   I T++ A  + LP +L A+
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +S+   K + GK LI RF K         R     H + W LF +Y   D+T  R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+F +L     S  E  +  LDQ INDRG+ VDVALA    + V+  + +L +E +    
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+    L     + +  ++T   +L+ +      A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346
             K N L+   +SD R RG +Q+ GA RT R++G  F PQNL R     +ELD+ I+ L 
Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           D+Y  T  + F + P  + K++   R IGK  EL LGY GG  AF + A   GL+L   A
Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476

Query: 464 HLVKTNSAPEEW------------EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
             +        W            ++A+   R  +++     I D  +   C+ +K+ WR
Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWR 536

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN--------NLILMLP 563
           + H      W ++  A    I N         R V      +  N         L + LP
Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596

Query: 564 SGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTYGGKLTENIVQAV 605
           SGR + Y  VG + S                    N  TRQ   +YTY GKL EN  QA+
Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            RD+LA  ++N    GY IVL VHDEI+CETPD  E+N + L  LM   P WA+G PL A
Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716

Query: 666 EGYESKRYRK 675
           EG E KRY K
Sbjct: 717 EGAEMKRYAK 726


>gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           MR1]
          Length = 631

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 222/685 (32%), Positives = 319/685 (46%), Gaps = 85/685 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M +   G+ 
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            N    LV +                                         WR  +  + 
Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576
             W    +A   T+++      RK      +     K  L++ LPSGR+L Y    VG N
Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547

Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   ++     R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VH
Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607

Query: 630 DEIVCETPDTDEFNASMLYHLMTSN 654
           DE++ E P         +  +M   
Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKP 631


>gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens
           FD-1]
          Length = 654

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 202/710 (28%), Positives = 317/710 (44%), Gaps = 92/710 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+++CG+ +YAE     ++L ++  D  PV   D      +P  + 
Sbjct: 1   MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP--------------IHRWICTLVLARSNG 104
            AL +  V   A N  FER  L      + P                 W C ++ +R  G
Sbjct: 61  SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCK--GETHECLYDRNKPNHREAWRLFGEYCK 162
           + S+L  +G+ L+L  +K++EGK+LI  FC    +    L   +K +  + W+ F EY +
Sbjct: 121 MMSSLDDMGKLLRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYDKSDAPKKWKEFIEYNR 180

Query: 163 GDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            DV V  +I + L   P+     E +Y+DQ INDRG  VD   A    ++    + +L  
Sbjct: 181 RDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKELFP 240

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +L+ LT   + +     ++K WL +  G+  + L + +   +L+S         +V    
Sbjct: 241 KLKELTR--LDNPNSPAQMKDWL-MRQGIEADSLDKKSMPLLLASAPDD---VKEVLMLY 294

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            + S+S+V K +T++ A   DGR RG   F GA+RTGR++G +   QNLP+    +    
Sbjct: 295 QQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDNLAET 354

Query: 341 QIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           + +              D   ++S  +R+  I  EGKK VVAD + IEARV++W+AGE W
Sbjct: 355 KWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISWLAGETW 414

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-T 454
           +++AF  GED+Y    A+ F V   +  V    R  GK+ ELA GY G   A + M    
Sbjct: 415 RMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIKAMGGTE 474

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L  +    LV+                                          WR+  
Sbjct: 475 LNLTDDELYSLVE-----------------------------------------DWRKTS 493

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             + +LW+++     + I +  ++   +      +    +   L + LPSGR L Y    
Sbjct: 494 PNIVKLWSDVQSVAVKVITDQSSMTFGR------LKFSYEIGILFIELPSGRRLAYVRPK 547

Query: 575 NNR--------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
             +        +Y      ++  R  TYG KL ENI Q ++RD+L   M        DIV
Sbjct: 548 VEKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSMAAMKDM--DIV 605

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             VHDE++ E     +     + HLM   P WA+GL L+A+GYE + Y K
Sbjct: 606 GHVHDEVIVECD--PDTTVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653


>gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 654

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 206/701 (29%), Positives = 304/701 (43%), Gaps = 74/701 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET SP D++  G+ KY+E     ++LF++ +    V + D      +P  + 
Sbjct: 1   MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L+  +V   A+N+ FE T L         + +W CT++     G P  L  +G+AL L
Sbjct: 60  LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118

Query: 119 SSQKMEE--GKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           +  KM++  G  LI  F   CK         RN P H  + W  +  Y K DV    E +
Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+  + ++ W +D  +N  G  +D  L      I +  +  L +E   LT   +
Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           S+     +L  WL   T L LE LT+ +    ++    L   A +V   R + ++S+V K
Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVAAAMTDADDL---AKKVLTIRKKLAKSSVSK 293

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A   DGRLRGTLQF GA+RTGRW+G +   QNLPR   ++ +  + +       
Sbjct: 294 YEMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRV 353

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  D    +S  +R+ +IA EG  L VAD + IEARV+AW++GE W+ K F  G D
Sbjct: 354 GLGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGD 413

Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464
           +Y  + +  F V   +  V    R  GKV ELALGYQGG  A + M +   GL      +
Sbjct: 414 IYCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMGALDMGLTEEELPN 473

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                    +   WRQ    + + W  +
Sbjct: 474 -----------------------------------------IVGLWRQASPNIVKFWYTV 492

Query: 525 HQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVG--------N 575
            +A   T+  G  +         L V        + + LPSGR L Y D           
Sbjct: 493 EKAAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNNFDKE 552

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
              +          E TYGGKL ENI QAV+RD LA  +M  +  G   ++ +HDE V E
Sbjct: 553 AVHFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDEAVIE 612

Query: 636 TPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P  +      ++         WA+GL L A G+ +  Y K
Sbjct: 613 VPKDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653


>gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 643

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 211/704 (29%), Positives = 305/704 (43%), Gaps = 91/704 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S ID+ K G  +YA  E   ++LFA+ FD   V++ D  +   +P  + 
Sbjct: 1   MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL++ +V   A+N+ FE   L  C  +  P+ +W CT+V A    LP+ L   GEAL +
Sbjct: 61  TALQDMEVIKHAYNAAFEWYCLN-CAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119

Query: 119 SSQKMEE--GKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +  K +   GK+LI  FC K                  W+ F EY + DV    EI  RL
Sbjct: 120 AEDKKKSAVGKQLIRYFCVKPYKP----------DAVKWKAFKEYNRQDVVSEMEIENRL 169

Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              P+   E E W  D  +N  G  VD  L +   +I +    +L  E   LT   + + 
Sbjct: 170 SGFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLTQ--LENP 227

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +L  W+  + G  LE+  + T +  L     L  +  +V   R +  +++V K   
Sbjct: 228 NSPTQLLNWVNAQ-GYPLENTQKATIESALKE--DLPLKVRRVLEIRQQLGKTSVKKYEA 284

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE------LDQIITHLP 347
           +   +    R+RG  QF GAS+TGR+SG +   QNLPR               Q    L 
Sbjct: 285 MTNTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYLEPLAETRECVKRQDYETLK 344

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
               S PD L   S  +R+  I S G + VVAD + IEARV+AW+A E W  + F T   
Sbjct: 345 LLFDSIPDTL---SQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHGK 401

Query: 408 LYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
           +Y  T ++ F+V   ++ K       R  GKV  LALGYQGG  A   M +   GL+   
Sbjct: 402 IYEATASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMGALKMGLSEEE 461

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                       +   WR  + R+  LW
Sbjct: 462 LPE-----------------------------------------IVTRWRAANQRIVALW 480

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY 579
           + +     +T+ +G+A             +K     L + LPS R L Y    +G N+  
Sbjct: 481 SAVGSYALRTVRDGRARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCKPYIGLNQFG 540

Query: 580 L--------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                    N TT++     T+GGKL ENIVQ ++RD L E +   T  GY IV  VHDE
Sbjct: 541 GESLYFYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIVFHVHDE 600

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ +     +     L  +M     WAKGL LK  G+  + Y+K
Sbjct: 601 VIVDA--GMDLTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642


>gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
 gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
          Length = 643

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 213/695 (30%), Positives = 316/695 (45%), Gaps = 82/695 (11%)

Query: 6   IDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +D ET S  D+ K G+ KYA  ED  ++  ++  +   V L D   +   P+ LK  + N
Sbjct: 5   LDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLTKEE-FPEFLKNHILN 62

Query: 64  TDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEALK 117
            D T  A N+ FER  L   F              W   +V A+  GLP++L+     L 
Sbjct: 63  ADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERCASYLG 122

Query: 118 LSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFK 173
           L  QK   GK LI  F   CK         RN P H  E W  +GEY   DV     I +
Sbjct: 123 LEEQKDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVVTQMAIAE 182

Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL+++T   ++
Sbjct: 183 KLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITG--LA 240

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +     +L  WL  E G     LT+   ++ L + +    +  +V   +++ + S++ K 
Sbjct: 241 NPNSRAQLLPWL-KEHGYSANGLTKADVEQELKTAEG---ELKRVLELKLQTAMSSLKKY 296

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +          
Sbjct: 297 EAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDARGYVKKRDIDA 356

Query: 352 SD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
            +         +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F T   +
Sbjct: 357 VEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKI 416

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                 
Sbjct: 417 YEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG---------------- 460

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                   A+         + +   WR+ + ++ + W ++ +A 
Sbjct: 461 ------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRAA 496

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYLN 581
            + I++   I   K R       +  K  L + LPSGR+L Y        D G+   Y  
Sbjct: 497 IKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYEG 550

Query: 582 TTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
              +   T + TYGGKL ENIVQA +RDILAE ++    AG+ +V  VHDE + E     
Sbjct: 551 QGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE---GS 607

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 608 GLTIEEVNDLMAQAPDWAEGLPLNSEGYVTKYYMK 642


>gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU]
 gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF]
 gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS]
          Length = 735

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/735 (34%), Positives = 352/735 (47%), Gaps = 67/735 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVH----------DP 51
           LF+DFET S  DL K G   YAE     ++L ++ FDD P ++WD             + 
Sbjct: 5   LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64

Query: 52  VMPQVLKEALENTD---VTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
             P  L   L       V +V HN   F+R +++ C  LDIP      T+V A  + LP 
Sbjct: 65  SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124

Query: 108 ALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGD 164
           +L  + E L + +   K + GK LI RFCK         R   N H + W+ F  Y + D
Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRNTHPDEWKQFKHYARND 184

Query: 165 VTVTREIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +T  REI+ ++       KE E+  LDQ INDRG+ VD  LA      V   R +L +  
Sbjct: 185 ITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQEAA 244

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           ++   G ++ +  L  L+    L    H+ +  ++T   +L        +A QV   R+ 
Sbjct: 245 QATYGGGLTGADFLPLLRD---LAPAHHIPNAQKSTLGDLLDDADLPD-EARQVIEMRLG 300

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A+ +A  K   L+  M++DGR RG LQ+ GA RT RW+G  F PQNL R     + L + 
Sbjct: 301 AASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLARG 360

Query: 343 ITHLPTSITSD-PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           I  L         D +++ +  VR C+I + GKKLVVAD + +E R LAW+AGE   L  
Sbjct: 361 IEALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALDT 420

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D+Y  T  + F ++P  V   +R IGK  EL LGY GG  AF   +   GL+L  
Sbjct: 421 FRAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLEE 480

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQ----ENHPEHAIED--------LFIGTACERVKKA 509
            A  +        W  A     +M+    +  P    +D              C+ +K+ 
Sbjct: 481 MAVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKRM 540

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARK-----------RRDVPLVYMKKDKNNL 558
           WR+ H R  + W +L +A    I+N  A                R +  L    K  N L
Sbjct: 541 WRESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNWL 600

Query: 559 ILMLPSGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTYGGKLTEN 600
            + LPSGR L Y  +G +                      N  TRQ   ++TYGGKL EN
Sbjct: 601 KIELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAEN 660

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
           + QA+ RDILA  M+    AGY+I+L+VHDE++ ETPDT E+N + L  LM   P+WAKG
Sbjct: 661 VTQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAKG 720

Query: 661 LPLKAEGYESKRYRK 675
            PLKAEG+E  RY+K
Sbjct: 721 FPLKAEGWEGYRYKK 735


>gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 712

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 267/713 (37%), Positives = 363/713 (50%), Gaps = 65/713 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET SP+ +   G+  YAE   ++LFA+   D PV++WDC     MP+ L  AL N
Sbjct: 11  LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121
             V +  HNS+F+RTVL+ C  ++IP+ RW  ++  A ++ LP AL  + E L++  +  
Sbjct: 70  PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128

Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178
           K ++GK L+A FCK     C   R  +  H   W  F +Y + DVT  R++ KRL     
Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   + 
Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L  E G+ L D+ + T +R L     L     ++ + R +AS ++  K   L+   
Sbjct: 249 LLHHLSTEHGVVLPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356
           + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +          D 
Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDV 367

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402
           + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL+AF              
Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWH 427

Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                                       G+D+Y   YA SF +AP  VTK+QR IGKV E
Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495
           LALGY GG  AF   A+   ++L   A   +    P   + A    +W + NH P   + 
Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQQAVEALQWTKANHRPTFGLS 545

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P   +G P
Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712


>gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
 gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
          Length = 763

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 246/761 (32%), Positives = 360/761 (47%), Gaps = 93/761 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           LF+D ET S +DL K G   YAE     +++  +  D+  V+ WDC   P MP+ L++AL
Sbjct: 7   LFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPRELRKAL 66

Query: 62  ENTD----VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
                     ++A+   F+R V++  + +D+P+ +   T+++A  + LP +L    + L 
Sbjct: 67  RRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDMQCQVLG 126

Query: 118 LSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + ++  K + GK LI RFCK         R  +  H E W  F  Y   D+   RE++ R
Sbjct: 127 VDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREVYWR 186

Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +     + KE E+  +DQ INDRG+ VDV LA    + V   + +L +E      G ++ 
Sbjct: 187 IPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERFGGKLTG 246

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  L  L+    L     + +  ++T   +L        +   +   R+ AS +A  K N
Sbjct: 247 NDFLPALRD---LAPAFTIHNAQKSTLNDLLED-PDFPDEGKVLIEMRLGASSTASTKYN 302

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS------------------- 333
            LV  +++DGR RG LQ+ GA RT RW+G  F PQNL R                     
Sbjct: 303 PLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESDVA 362

Query: 334 ---RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              RSH   + I + L  +     D  ++ +  VR C+I ++GKK VVAD + +E R LA
Sbjct: 363 FWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRGLA 422

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---KDQRAIGKVMELALGYQGGAKA 447
           W+AGE+  L  F+ G D+Y  T  + F + P  +    KD R IGK  EL LGY GG  A
Sbjct: 423 WIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYGGGVAA 482

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH----PEHAIED------- 496
           F + A   GL+L   A ++K       W  A+    + + N     P+   +D       
Sbjct: 483 FLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDERPTYIL 542

Query: 497 -LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG---------------KAIIA 540
              +   C+ +K+ WR+ H +    W EL  A    I N                KA+  
Sbjct: 543 PKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGKKALKI 602

Query: 541 RKRRDVPLVYMKKDKN-------NLILMLPSGRSLVYR------------DVGNNRS--- 578
            + +        ++++        L + LPSGR + Y             D G  R+   
Sbjct: 603 VRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKKRTSTR 662

Query: 579 ----YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                 N TTRQ   +YTYGGKLTENIVQA+ RDILA  M     AGY+IVL+VHDE++ 
Sbjct: 663 IKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVHDELIT 722

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E PDTD++    L  LM   P WAKG PL AEG    RYRK
Sbjct: 723 EVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763


>gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
 gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
          Length = 666

 Score =  575 bits (1481), Expect = e-162,   Method: Composition-based stats.
 Identities = 231/709 (32%), Positives = 325/709 (45%), Gaps = 84/709 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
            L+ID ET S +D+   G+ KYAE  D  V+L A+  DD  VEL D      + Q     
Sbjct: 5   KLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVG 64

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           ++  LE+ +    AHN++FE   LK   ++ I   RW CT+V     G P++L+ +GEAL
Sbjct: 65  VRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEAL 124

Query: 117 KLSSQKME--EGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            +   K +   GK LI  FCK            RN P H  E W LF EYCK DV V RE
Sbjct: 125 DMPEDKAKLRTGKALINYFCKPCKPTKTNGGRTRNLPKHASEKWELFREYCKRDVEVARE 184

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           I K L  +       W  D  +N RG  VD AL      I    ++     ++ +T   V
Sbjct: 185 IDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDTIKRITG--V 242

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            + R   ++  WL       +  L   + + +L S   LT  A  V        +++  K
Sbjct: 243 DNPRSRAQVLDWLNDTLDEEITSLNAASVKALLES--DLTDDARAVLTAWQGLGKTSTKK 300

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
             TL  A   D R+RG LQF GASRTGRW+G +  P NLPR       L+Q    +    
Sbjct: 301 YETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVY--NLNQAGELVKAGH 358

Query: 351 TSDPDPL-----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             D + L       +S  +R+C +  EG K V+ D + IEARVLAW+AGE W L+ F+  
Sbjct: 359 KKDIELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVLEEFKGD 418

Query: 406 EDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             +Y  T AR +N+  + + K       R  GK+  LALGYQG   A ++M ++      
Sbjct: 419 GKIYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMGAS------ 472

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                             ED F       + +AWR  +  ++EL
Sbjct: 473 ----------------------------------EDEFTDDELRGLVRAWRVANPCIAEL 498

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKK----DKNNLILMLPSGRSLVYRD---V 573
           W       + T+ +     +     +P+ +       +  NL + LPSGR L Y +   V
Sbjct: 499 WRYTEMMAKSTVSD--EFYSGTNPMIPISFKSTLNAVNGINLAIGLPSGRELYYHNPVIV 556

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
                Y + T    T+E TYGGKL ENIVQA++RD+LA+ +   TK          IVL 
Sbjct: 557 DGAIYYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGINAHIVLH 616

Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDE+V E      E    +L  + ++ PSWA+GLPLK E + S  Y+K
Sbjct: 617 VHDEVVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665


>gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1]
          Length = 698

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 238/695 (34%), Positives = 337/695 (48%), Gaps = 57/695 (8%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALE-----NTDVTIVAHN-SYFERTVLKACFNLD 87
           A+ FDD PV++WDC +   MP  L  AL      N+ + +V HN S F+R ++K C+  D
Sbjct: 8   AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR 145
           IP+   I T++ A  + LP +L A+ E L +S+   K + GK LI RF K         R
Sbjct: 68  IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127

Query: 146 -NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVA 202
                H + W LF +Y   D+T  RE+F +L     S  E  +  LDQ INDRG+ VDVA
Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
           LA    + V+  + +L +E +    G ++    L  L+    L     + +  ++T   +
Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDL 244

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L+ +      A  +   R+ A+ +A  K N L+   +SD R RG +Q+ GA RT R++G 
Sbjct: 245 LADDDLPD-DASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGK 303

Query: 323 VFPPQNLPRPSRSHEELDQIITHL-PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
            F PQNL R     +ELD+ I+ L         D  ++ +  VRSC+I   G K VVAD 
Sbjct: 304 GFQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADY 363

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ---RAIGKVMELA 438
           + +E R LAW+AGE+  L  F  G D+Y  T  + F + P  + K++   R IGK  EL 
Sbjct: 364 SNVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELG 423

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW------------EDAENFCRWMQ 486
           LGY GG  AF + A   GL+L   A  +        W            ++A+   R  +
Sbjct: 424 LGYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGE 483

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           ++     I D  +   C+ +K+ WR+ H      W ++  A    I N         R V
Sbjct: 484 KDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGV 543

Query: 547 PLVYMKKDKN--------NLILMLPSGRSLVYRDVGNNRS------------------YL 580
                 +  N         L + LPSGR + Y  VG + S                    
Sbjct: 544 KFSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGE 603

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           N  TRQ   +YTY GKL EN  QA+ RD+LA  ++N    GY IVL VHDEI+CETPD  
Sbjct: 604 NQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLP 663

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+N + L  LM   P WA+G PL AEG E KRY K
Sbjct: 664 EYNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698


>gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45
 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1]
          Length = 993

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/611 (36%), Positives = 331/611 (54%), Gaps = 26/611 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK  L++
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL  + +   ++S K
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI+  CK         R     H E W+ F +Y   D+   REI++ L   +
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   +
Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T QR + ++  + P   ++ + R+++  ++  K   L+++
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPALRELLSVRLQSCTTSTSKYKALLKS 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PD 355
           +++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D
Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY 
Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YAR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N 
Sbjct: 423 LAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
            P    +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q
Sbjct: 483 PPGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---RSYLNTT--TR 585
            I++       ++  V     ++DK+ L + LPSGRSL Y          +Y+ T   +R
Sbjct: 542 AIQSPGIAFKCRKLSV-----RRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSR 596

Query: 586 QLTREYTYGGK 596
           +  R  TYGGK
Sbjct: 597 KWERLKTYGGK 607



 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI QA +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 975 AWDLPLSANGFETYRYRK 992


>gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2]
 gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2]
 gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 993

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 222/611 (36%), Positives = 331/611 (54%), Gaps = 26/611 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK   ++
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL  + +   ++S K
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI+  CK         R     H E W+ F +Y   D+   REI++ L   +
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   +
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T QR + ++  + P   ++ + R+++  ++  K   L+++
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PD 355
           +++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D
Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY 
Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YAR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     + 
Sbjct: 423 LAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
            P    +A ++ +   E    + + +  I   C+ +K+ WR  H +    W ++  A +Q
Sbjct: 483 PPGVKREATSWYQKSVETDKTYGLSEK-IFVNCDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---RSYLNTT--TR 585
            I++       ++  V     ++DK  L + LPSGRSL Y          +Y+ T   +R
Sbjct: 542 AIQSPGIAFKCRKLSV-----RRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSR 596

Query: 586 QLTREYTYGGK 596
           +  R  TYGGK
Sbjct: 597 KWERLKTYGGK 607



 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI QA +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 975 AWDLPLSANGFETYRYRK 992


>gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407]
          Length = 598

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 223/589 (37%), Positives = 323/589 (54%), Gaps = 24/589 (4%)

Query: 104 GLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEY 160
           G   AL  + E L +   K   +EGK LI  FCK         R     H E WR F  Y
Sbjct: 16  GSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAY 75

Query: 161 CKGDVTVTREIFKRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
              D+   RE++KRL   + +  E  LW+ DQ INDRG C+DV LA      VD E+ +L
Sbjct: 76  AGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRL 135

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
            +  + +T G V ++   + L   +    G+ L D+  +T +R ++    L     ++  
Sbjct: 136 AKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLA 194

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R++AS ++  K   L++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E+
Sbjct: 195 IRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQ 254

Query: 339 LDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           +D+ I  L          + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+
Sbjct: 255 IDEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEE 314

Query: 397 WKLKAFET-----GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           WKL AF       G DLY   YA++F++AP  V K  R IGKVMEL LGY GG  AF   
Sbjct: 315 WKLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITF 374

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   GL+L+  A+    N   +   +A+++     +    + + +  +  AC+ +K+ WR
Sbjct: 375 ALVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWR 433

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           + H    + W EL       I   +     K      + +++D   L + LPSGR++ Y 
Sbjct: 434 RAHPATCDFWYELECTVRTAIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYP 488

Query: 572 DV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
                  N +Y+  N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVL
Sbjct: 489 SPVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVL 548

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           TVHDE++ E+PDT++FN   L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 549 TVHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597


>gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358]
          Length = 653

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 223/696 (32%), Positives = 316/696 (45%), Gaps = 68/696 (9%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
             L ID ET S +DL  CG+ +YA      + LF++ F D PV   D     V+P  +  
Sbjct: 3   KPLHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKVLR 62

Query: 60  ALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           AL +     VAHN+ FER  +        +    W CT+V     GLP +L  +G+AL L
Sbjct: 63  ALRDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKALGL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK +EGK LI  F   CK         +N P H  E W  +G+Y + DV V   I  +
Sbjct: 123 DVQKDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETGISDK 182

Query: 175 LE---PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           L     L + E   +  DQ IND G  VDV       ++ D  + +   +L  LT   V 
Sbjct: 183 LAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG--VE 240

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS--NKKLTPQAIQVFNNRMRASRSAVL 289
           S   +++LK W     G  +E L +  C+  L+     +  P+  ++      A  +AV 
Sbjct: 241 SVTKVQQLKAW-AAAQGYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGGAAVA 299

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           K + ++  +  DG ++G L+F GA  T RW+G     QNLPR     ++L+     +   
Sbjct: 300 KYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQIVAKG 359

Query: 350 IT----SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            T       +P+ +I+  VR+ +      +  V+D + IEARV+AW AGE W LKAFE G
Sbjct: 360 KTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKAFEDG 419

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED+YV T ++ ++V   +     R  GK   LALGYQGGA A   M              
Sbjct: 420 EDIYVATASKMYHVTGEEAEA-MRQKGKQATLALGYQGGANALIVMG------------- 465

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A+           + + WR+ +  +  LW+ + 
Sbjct: 466 ---------------------------ALRAGIPEEELPELVQLWRKANPNIVNLWHTVD 498

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYLNT 582
           +A    I NG A          ++  K D++ L + LPSGR L Y D     N  SYL  
Sbjct: 499 KAARMAINNGGAKRYVLADGKLVISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKISYLKG 558

Query: 583 TTRQLTR--EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                +R    TYGGKLTEN+VQA SRD+L   +M    AG   V  VHDE +   P+  
Sbjct: 559 VRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIVPEGT 618

Query: 641 EFNASMLYHLMTSN-PSWAKGLPLKAEGYESKRYRK 675
           +     + +LMTS  P WA GLPL +EG   K YRK
Sbjct: 619 KI--EEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652


>gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
 gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
          Length = 704

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 234/702 (33%), Positives = 341/702 (48%), Gaps = 33/702 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L++D ET S  DL + G  +YAE    +LFA+   D P  +WDC  +  M   L  A+++
Sbjct: 5   LWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTAEE-MHDELYHAMDD 63

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVLARSNGLPSALKAVGEALKLSS 120
            D    AHN++F+RT+        +P     RW C++ +A S+ LP  L  +   LK+ +
Sbjct: 64  ADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKVPA 123

Query: 121 Q--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              K+ +GK+L+  F + +       R  +  H   W  F +Y   D+T  RE  +R+  
Sbjct: 124 DMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRMPA 183

Query: 178 LS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            +  +     W+LDQ IN RG+ VD AL     +    E+ ++      L+ G   +   
Sbjct: 184 WNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQ-FTPGQ 242

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            EK + +L    G  L++    T Q +L  +  L     ++    + +++++  K   L 
Sbjct: 243 REKFRVYLGQRLGYELDNTQAGTFQVML-RDPGLPADVREMIELAIASNKTSTAKYAALD 301

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR-SHEELDQIITHLPTS--ITS 352
            A++ DGR RG LQF GASRT RW+G +F PQNLP     S E ++  I HL        
Sbjct: 302 PAVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHALF 361

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GED 407
             + + + +  +R CV+A+ GKKLVVADL+ IE RVLAW+A E+WKLKAF       G D
Sbjct: 362 FDNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGPD 421

Query: 408 LYVTTYARSFNVAPAQVTKDQRA-IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           LY  T        P  V K  R   GKV +LA GYQGG   +Q  A + GL +  F   +
Sbjct: 422 LYNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDTI 481

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +     +    A            E    D     A E  K AWR +H   S+ W  L  
Sbjct: 482 QQMVPAQHVAKAWENLASWGHPQLESLEIDEIEWVASETCKLAWRARHPATSKFWYALGG 541

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG------------ 574
           A +  I N  ++              + +  L++ LPSGR L Y +              
Sbjct: 542 AAKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRDETIAY 601

Query: 575 -NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
               S    TTRQ  R +T+GGK+T N  Q ++RDILA  M  A   GY  VL+VHDE +
Sbjct: 602 WGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSVHDEAL 661

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E PDTD+F A+ L  ++ +NP+WA  LPL A G+E+ RY+K
Sbjct: 662 TEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703


>gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 560

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 183/612 (29%), Positives = 281/612 (45%), Gaps = 78/612 (12%)

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHEC 141
            L +    W CT++ + + GLP +L++VG  L L  QK+ EGK LI  FC          
Sbjct: 5   GLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGLDKQKLTEGKNLIKYFCLPCNPTKVNG 64

Query: 142 LYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYC 198
              RNK  H  E W LF  Y K DV V   I ++L   P+     + +YLDQTINDRG  
Sbjct: 65  GRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQTINDRGIE 124

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           +D     +  ++    +T L  EL+ +T   + +   + ++++WL  E GL +E L +  
Sbjct: 125 IDSLFVESAIKLDQEVKTHLMSELKHVTG--LENPNSVLQMRSWL-KEHGLEMESLGKKE 181

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
             + L +  K   +  +V   R + ++S+V K   +  A   D R RG  +F GA+RTGR
Sbjct: 182 VAKELKTVGK---ELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGR 238

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKK 375
           ++G +   QNLP+         + +         +    D    +S  +R+  I   G K
Sbjct: 239 FAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGFK 298

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGK 433
            +VAD + IEARVLAW+AGE+W+++ F  G+D+Y ++ ++ F+V   +  V    R  GK
Sbjct: 299 FIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGK 358

Query: 434 VMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           + ELALGY G   A + M +   GL       LV                          
Sbjct: 359 IAELALGYGGSVGALKAMGALDMGLTEEELQPLVDA------------------------ 394

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                            WR+ +  V+ LW ++ +A +Q +    ++          +   
Sbjct: 395 -----------------WRKSNPMVTTLWWDVDRAVKQCVHEHISV------RTHNIVFT 431

Query: 553 KDKNNLILMLPSGRSLVYRDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQ 603
                LI+ LPS R L Y           G + +Y    +T++  R  +YG K  ENI Q
Sbjct: 432 YKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQ 491

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPL 663
           A++RDIL   M    +  Y IV  VHDE + ET      +   +  LM   P WA+GL L
Sbjct: 492 AIARDILLYAMQTLKE--YRIVAHVHDEAIIETDKN--VSVQSVCELMGRTPPWAEGLVL 547

Query: 664 KAEGYESKRYRK 675
           +A+GYE + Y+K
Sbjct: 548 RADGYECEFYKK 559


>gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
 gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
          Length = 681

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 229/688 (33%), Positives = 343/688 (49%), Gaps = 51/688 (7%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLD 87
           +++ +  DD PV  WD      MP  L EA++  D     +   F+R VLK         
Sbjct: 1   MIWTWAIDDGPVGTWDVTTGAPMPVELDEAIDAADEYWWQNGGMFDRVVLKHAAPEIYAR 60

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR 145
           +P H+W  T+V A ++GLP  L  + E   + +   K +EG +LI  FCK         R
Sbjct: 61  MPEHKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRR 120

Query: 146 -NKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQTINDRGYCVD 200
             +  H E W  F  Y   D+T  R + K +     P +  E  LW+ DQ IN RG  +D
Sbjct: 121 ATRETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMD 180

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
           V LA    + +D  + +L      LT G V+ +   +KL   L  E  + L D+ ++T +
Sbjct: 181 VELAEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLE 240

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
           R + ++  L     ++   R+ A+ ++  K  TL+  +++DGRLRG +QF GA RTGR +
Sbjct: 241 RRI-NDPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVA 299

Query: 321 GCVFPPQNLPRPS------------------RSHEELDQIITHLPTSITSDPDPLQIISD 362
             +F P N+PRP                     + EL         +     + + + ++
Sbjct: 300 HRLFQPGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTAN 359

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTYARSF 417
            VR  ++A +GK+L V+DL+ IE R  AW+AGE+WKL+AF       G DLY   YAR+F
Sbjct: 360 VVRGTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAF 419

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT---NSAPEE 474
            VA   V K  R +GKVMELAL Y+GG  AF     T  ++L++    V        PE 
Sbjct: 420 GVAVEAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEI 479

Query: 475 WEDAENFCRWMQENHPEHAIE-DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             +A     W  +      +  D+FI  AC+ +K+ WR+ H + S  W EL  A    I 
Sbjct: 480 VREARGMWEWAVKKRRTLGLPQDVFI--ACDILKRLWRRAHPQTSSYWPELRDAAILAIS 537

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYL--NTTTRQL 587
           +    +  +R     V +++D   L + LPS R L Y           SY+  N  TR+ 
Sbjct: 538 SPGKTVHARR-----VILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEISYMGVNQYTRKW 592

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
            R  TYGGK+ EN+ QAV+RD+L         AGYDIVL++HDE++ E PD D+++A  L
Sbjct: 593 QRTKTYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADEL 652

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             L+ + P+WA+G+PL A G+ + RY+K
Sbjct: 653 SSLIATAPAWAEGMPLAAAGFSAYRYKK 680


>gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 579

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/581 (36%), Positives = 318/581 (54%), Gaps = 21/581 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK   ++
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL  + +   ++S K
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +EGK LI+  CK         R     H E W+ F +Y   D+   REI++ L   +
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   +
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T QR + ++  + P   ++ + R+++  ++  K   L+++
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PD 355
           +++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D
Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY 
Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YAR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     + 
Sbjct: 423 LAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
            P    +A ++ +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q
Sbjct: 483 PPGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            I++       ++  V     ++DK  L + LPSGRSL Y 
Sbjct: 542 AIQSPGIAFKCRKLSV-----RRDKGWLRICLPSGRSLCYP 577


>gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1]
          Length = 645

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 196/682 (28%), Positives = 305/682 (44%), Gaps = 80/682 (11%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           A+  +   V+  D      +P  L+EALE+ DV   A N+ FER + +    +  P   W
Sbjct: 3   AWSINGGAVQHVDLHRGKKLPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAW 62

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKG---ETHECLYDRNKP 148
            CT+ LA   G    L AVG  + L   K++  EGK LI  F K            RN+ 
Sbjct: 63  RCTMALAYMLGFAGDLLAVGTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEA 122

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
              E W  F +Y   DV     I  RL   P+   E +++ LDQ IND G  +D   A++
Sbjct: 123 TDPEDWWHFCKYNIRDVETELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYS 182

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL--S 264
              + +  + ++ +E+  +T   +++     +L  WL  E G    DL   T  +V+  +
Sbjct: 183 ALALAEARKPQIIEEMADITG--LNNPNSPAQLTPWL-KERGYPFSDLRSDTVNKVIREA 239

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
               + P+AI+V   R+ ++++++ K  T+++A   DGR R +LQF GASRT RW+G   
Sbjct: 240 DENGVDPEAIRVLQMRLNSAKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRI 299

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPD--------PLQIISDCVRSCVIASEGKKL 376
             QNLPR  +  E++  +          D D        P+  +  C+RS  I + G K 
Sbjct: 300 QTQNLPRTPKLIEDVTDLSIVNKMIHQRDLDALTLYVGEPMDALVGCIRSAFIPTPGHKF 359

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +VADL+ IE+ V+ W+   +W +       DLY +  A   ++   + TK  R+  K   
Sbjct: 360 IVADLSSIESVVIGWLTDCKWFMNTLAAKHDLYRSFAAHWLHLPYEE-TKPHRSKAKPAT 418

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
           L  GY+ G     +    TGL                 W  AEN    M +   E ++  
Sbjct: 419 LGAGYRLGGGHMDENGKKTGL-----------------WGYAENMGVHMTQKEAEESV-- 459

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                      +A+R     +   W +L  A  + I   +A++         + ++  K 
Sbjct: 460 -----------QAFRDLCPEIVRAWYDLENAVFKVIRTRQAVVW------GCLIIEYTKP 502

Query: 557 NLILMLPSGRSLVY---------------RDVGNNRSYLN--------TTTRQLTREYTY 593
            L + LPSGR + Y                  G   +  N         +  +  + Y++
Sbjct: 503 FLTIRLPSGRKMYYFRPRLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSH 562

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653
           GGKL ENIVQA++RD+LAEG+  A + G+ IV+ +HDEIV E P+        L   M +
Sbjct: 563 GGKLVENIVQALARDVLAEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAA 622

Query: 654 NPSWAKGLPLKAEGYESKRYRK 675
              WA+GLPL A G+E   YRK
Sbjct: 623 ELPWAEGLPLGAAGWEGYFYRK 644


>gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23]
 gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23]
          Length = 545

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 180/596 (30%), Positives = 271/596 (45%), Gaps = 69/596 (11%)

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-E 152
           +V     GLP++L  + +AL+L+ +K  EGK LI  FC   K         RN P H  E
Sbjct: 1   MVHGTLLGLPASLDMMSKALRLAQEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASE 60

Query: 153 AWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
            W  F EYC+ DV V R I K++   P    EQ  W LDQ I D+G  +DV L       
Sbjct: 61  KWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIAC 120

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
            +  +  L ++ + LT   + +   +++LK WL    G  +  L + +   +L+  + L 
Sbjct: 121 QERYQASLSKKAKGLTG--LENPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLAD-EDLD 176

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
               ++   R   S++++ K   +  A   DGR+RG LQF GA+RTGRW+G +   QNLP
Sbjct: 177 EDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLP 236

Query: 331 RPSRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           R         +           +    +   ++S  +R+  IA +G    + D + IEAR
Sbjct: 237 RNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEAR 296

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           V+AW+AGEQW+L  F +   +Y  + ++ F++   +V K+ R  GKV ELALGY GG  A
Sbjct: 297 VIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNA 356

Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              M +   GL  N                                             +
Sbjct: 357 LIAMGALEMGLKENELQ-----------------------------------------GI 375

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             AWR+    ++ LW  + +  +  I        RK +    +    +   L + LPSGR
Sbjct: 376 VDAWRKASPAITSLWRGVEKHAKLAIST------RKSQKYKGLTFYYEAGILFIKLPSGR 429

Query: 567 SLVYR-------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +L Y          G    Y   T +   ++YTYGGKL ENIVQA++RD LA  +     
Sbjct: 430 NLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIED 489

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            G D V+ VHDE + E  ++ E +   L  ++    SWA GLPL+ +G+ S  Y K
Sbjct: 490 TGIDTVMHVHDEAITEVQES-ESSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544


>gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 591

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 208/560 (37%), Positives = 302/560 (53%), Gaps = 16/560 (2%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+   D PV +WD      +P  L++A+ +
Sbjct: 5   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAIAD 63

Query: 64  TDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
            D  +  HNS+F+RTVL+     L   + RW  T+V A ++GLP AL A+ E L +    
Sbjct: 64  PDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQDK 123

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI  FCK         R     H E WR F  Y   D+   RE+ KRL   +
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPKWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            K  E  LW+ DQ INDRG C+DV LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 184 YKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K  +L++ 
Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRMAD-PDLPSAVKELLAIRLQASTTSTSKYKSLMKG 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRPS   +++D+ I  L          +
Sbjct: 303 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFDN 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C++A EGKKLVV+DL+ IE R LAW+AGEQWKL AF       G DLY 
Sbjct: 363 IMELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YAR+FN++P  V K QR IGKVMEL LG+ GG  AF   A   GL+L+  A+    N 
Sbjct: 423 LAYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+N+     +    + + +  +  AC+ +K+ WR+ H    + W EL +    
Sbjct: 483 PRDVIREAKNWYDESVKRKATYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRA 541

Query: 531 TIENGKAIIARKRRDVPLVY 550
            I         +  + P  +
Sbjct: 542 AIATPTKDAVLRLSESPPRW 561


>gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
 gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
          Length = 538

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 196/592 (33%), Positives = 265/592 (44%), Gaps = 78/592 (13%)

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPNHRE-AWRLFGEYCK 162
            +L AVG AL L  QK   GK LI +FC   T         RN P+    +W  F +Y +
Sbjct: 1   MSLDAVGAALDLDVQKDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYNQ 60

Query: 163 GDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            DV V   I  RL   P+   E + + LDQ IND G  +D  LA     + D  R     
Sbjct: 61  RDVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATLA 120

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
               LT   + +     +LK WL    G  +  L +   +  L S    T +  +V   R
Sbjct: 121 RARELTG--LENPNSPIQLKEWL-TTHGCEMSSLAKADVEAALES---ATGKVKEVLELR 174

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++S+V K   +     +DGR RG +QF GA RTGR++G +   QNLPR      +  
Sbjct: 175 GDLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQA 234

Query: 341 QIIT------HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           + +T       L     S PD L   S  +R+  I S G + +VAD + IEARV+AW+AG
Sbjct: 235 RTLTRQRNLDALELLYDSVPDTL---SQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAG 291

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           E   L AF  G+DLY  T +R F V   +  +  + R  GK+  LA GY G   A + M 
Sbjct: 292 ETSTLAAFRDGKDLYCETASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG 351

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                                   A+         + +  AWR 
Sbjct: 352 ----------------------------------------ALRMGLAEHELKPIVDAWRA 371

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-- 570
            +  +  LW ++ QA    I   +A+  R  R         +   L + LPSGR L Y  
Sbjct: 372 ANPNIVRLWADVEQAALDAITTRQAVRLRNLR------FTAESGILFITLPSGRRLAYVK 425

Query: 571 RDVGNNR------SYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
             +G NR      +Y   TT R+  R  TYGGKL ENIVQAV+RD+L   M    +AG+ 
Sbjct: 426 PQLGENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHK 485

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           IV+ VHDEIV + P+   F  +    LMT+ P WA GLPL A+GYE   YRK
Sbjct: 486 IVMHVHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537


>gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
 gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
          Length = 601

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 214/661 (32%), Positives = 316/661 (47%), Gaps = 78/661 (11%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIPIH 91
            A+   D    LW       +P+ +      ++ TI A NS+FE  +        + PI 
Sbjct: 1   MAYAIGDEDPILWLP--GDDLPEFVTN---PSEFTIYAWNSFFEWCIWHHVQEWSNAPIF 55

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSS--QKMEEGKELIARFCKGETHECLYDRNKPN 149
            W  T  LA    +P AL A  +AL L    QK + GK LI R  K    + + D     
Sbjct: 56  LWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSKPNRGKRIQD----- 110

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
             +    F EYC+ DV V R +  RL PLS++E+++W LDQTIN RG  +D         
Sbjct: 111 -ADLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVENALL 169

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
           I+D    KL+QE+  LT   +++    +++  ++  E G  L    +   + VL   + L
Sbjct: 170 IIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLED-ETL 228

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P A ++   R +  +++  K   L + +  D R  G L + GA+ TGRWSG  F PQNL
Sbjct: 229 PPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQNL 287

Query: 330 PRPSRSHEE-----LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
           PRPS    +          + L   I  DP  ++ +S  +R  + A EGK+L+V D + I
Sbjct: 288 PRPSFKDTDNCIRLFKHADSELLELIYDDP--MEALSSSLRGMICAPEGKRLIVVDYSQI 345

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           EARVL W+AG++  L     G ++Y  T ++ + V P +V ++QR IGKV  LALGYQGG
Sbjct: 346 EARVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQGG 405

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           AKAFQ MA   G+ ++T                                          +
Sbjct: 406 AKAFQGMAEVYGVEIDT---------------------------------------DLAD 426

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +K  WR  + ++ + W  + +A    + +       K  ++  +  +   N L   LPS
Sbjct: 427 EIKVDWRVANRKIVKFWWGVEKAALNAVTHP-----GKTFEIRAIKFRFTDNYLFCRLPS 481

Query: 565 GRSLVYRDVGNNRS----------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
           GR L Y     +              N+ TR+  R+ TYGGKL ENI QAV+RD++AE M
Sbjct: 482 GRLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMAEAM 541

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +    AGY++VL+VHDE++ E  D D  +      LM   P WAKGLP+ +EG+E  RYR
Sbjct: 542 LRVENAGYEVVLSVHDELIAEAND-DFGSVEEFEQLMCELPVWAKGLPVTSEGFECLRYR 600

Query: 675 K 675
           K
Sbjct: 601 K 601


>gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 150/458 (32%), Positives = 231/458 (50%), Gaps = 25/458 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L + G  +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L       +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +       +  Q  + LT   +++
Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTG--LAN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+  + L + +  ++L +    T    QV   R   S+S+V K  
Sbjct: 239 PNSPLQLKNWLH-QQGVETDSLAKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII------THL 346
            + +AM  DG + G LQF GA+RTGRW+G +   QNLPR S    E  + +      T L
Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+G    VAD + +EARV+AW++GE+W+  AF   E
Sbjct: 355 AMLYESVPD---VLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQ 442
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY 
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 971

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 150/478 (31%), Positives = 228/478 (47%), Gaps = 39/478 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL +D ET S ++L KCG+ KYAE     ++LF +  D   V++ D      +P+ + 
Sbjct: 1   MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF--------------------NLDIPIHRWICTLV 98
           +AL +  VT  A N+ FER  L                           +    W C++V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154
            +   GLP +L+ VG  L L +QKM+EG+ELI  F   CK         RN P H  + W
Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALDKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F  Y K DV V   I +RL+  P+  +  E ++LDQ INDRG  +D+ LA     +  
Sbjct: 181 NQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAMDA 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R  L   L+  T   + +   + ++  WL  + GL  + L +   + +L + ++    
Sbjct: 241 KSRESLMAALKEKTG--LENPNSVLQMLGWL-EDHGLKTDSLGKKQVKELLKTAQEP--- 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K   +  A+  DGR RG  QF GA+RTGR +G     QNLP+ 
Sbjct: 295 LRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQN 354

Query: 333 SRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +         D        ++S  +R+  +   G K VV+D + IEARV+
Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGA 445
           +WMAGE+WK  AF  G+D+Y +T ++ F V   +  V  + R  GK+ ELA   +G  
Sbjct: 415 SWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACIAEGQL 472



 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 19/193 (9%)

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
            A++          + ++WR  +  + + W ++  A +  I+    +       V  +  
Sbjct: 788 GALDMGIPEEELGSLVQSWRSANPHIVDFWWQVDGAVKTAIKQRIPVW------VNNIRF 841

Query: 552 KKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIV 602
                 L + LPSGR L Y    +G N+    + T       ++  R  +YG K  ENIV
Sbjct: 842 VCQSGMLFIELPSGRQLSYVKPRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIV 901

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662
           Q  +RDIL   M         IV  VHDE++ E   + E +   +   M+  P WA+GL 
Sbjct: 902 QGTARDILCYAMQTL--RCCAIVGHVHDELIIEC--SKEVSVDAICEQMSRTPPWAEGLV 957

Query: 663 LKAEGYESKRYRK 675
           L+A+GYE   Y+K
Sbjct: 958 LRADGYECAFYQK 970


>gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 149/458 (32%), Positives = 235/458 (51%), Gaps = 25/458 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L+N ++   A N+ FER  L       +    W C+ V + + GLP +L+ +G  L L
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT   +++
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--LAN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+    L++ +  ++L +    T    QV   R   S+S+V K  
Sbjct: 239 PNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHL 346
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  +       +  L
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   E
Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411

Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQ 442
           D+Y  + ++ F V   +  +  + R  GK+ ELALGY 
Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul]
 gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul]
          Length = 693

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 201/726 (27%), Positives = 318/726 (43%), Gaps = 96/726 (13%)

Query: 6   IDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +D+E+RS  DL  CG+  Y+  E   +++ ++ F+   V+ W+   D   P  ++EALE+
Sbjct: 7   LDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWEI-RDGKFPAEVREALED 65

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            +V   A N+ FER + +    ++ P   W CT+  A        L+ VG  L L   K+
Sbjct: 66  PNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQDKV 125

Query: 124 E--EGKELIARFCKG---ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   GK+LI  F K             +   +   W  F  Y + DV     I + L P 
Sbjct: 126 KLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAIDEWLAPY 185

Query: 179 S--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
               +E EL+ LDQ INDRG  VD+   ++   + D  + +L +++ ++T   + +    
Sbjct: 186 PTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITG--LENPNSP 243

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKK---LTPQAIQVFNNRMRASRSAVLKLNT 293
           ++LK W+    G   +DL + T ++VL+ +K    LT +  +V   RM+++R++V K   
Sbjct: 244 QQLKPWVKAR-GYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVGKYKK 302

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHLP 347
            V  +    RLR  LQF GA RT RW+G      NL R  ++ E           +T+  
Sbjct: 303 FVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTVTNAI 362

Query: 348 TSITSDP------DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
            +   D       +P+  ++ CVRS + A EG + V  DL+ IE  V+AW+A  Q  L  
Sbjct: 363 RAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPLLNV 422

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G   Y     R + V   +VT   R + K   L  GY+ G          TGL    
Sbjct: 423 FREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL---- 478

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                        W  AEN    M       +++              +R+ +  V +LW
Sbjct: 479 -------------WGYAENMGIDMSRQEAHDSVK-------------MYREAYPEVPQLW 512

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR---------- 571
            +L  A  +TI+       R       V  +     L+ +LPSGR + Y           
Sbjct: 513 KDLEAAIIRTIKTKAVTRVR------YVSFEIVGEFLVAILPSGRRMYYHRPRIEKKKFQ 566

Query: 572 ---------------------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                 +G +    N   ++  R+ ++GGK+TEN+VQA++R+IL
Sbjct: 567 KKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIAREIL 626

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYE 669
             G+ NA K G +IVL VHDEIV      D      +L   MT+   W + +P+ A G+ 
Sbjct: 627 KYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGAAGWS 686

Query: 670 SKRYRK 675
           +  YRK
Sbjct: 687 AAFYRK 692


>gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterococcus sp. 7L76]
          Length = 545

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 140/436 (32%), Positives = 219/436 (50%), Gaps = 18/436 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L +D ET S +DL+KCG+ KY+E  D  ++LFA+  D  PVE+ D   D  +P  + 
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +L +  V   A N+ FER  L     LD  +    W CT+V   + GLP +L  VG  L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            L+ QK+ EGK+LI  FC             RN P+H    W  F  Y   DV V   I 
Sbjct: 121 GLNKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIAIQ 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+     + ++LDQ INDRG  +D        Q+ ++ +  L+Q+L+ LT   +
Sbjct: 181 GKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   + +++ WL L+ GL  E L +     +L   + +     QV   R + ++S+V K
Sbjct: 239 ENPNSVLQMRGWL-LDHGLETESLGKKAVDELLE--QPIDENLKQVLVLRQQLAKSSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
              +     SD R RG  QF GA+RTGR++G     QNLP+   S     + +       
Sbjct: 296 YQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSLVKQSNFE 355

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +   ++S+ +R+  +  EG K +V+D + IEARV+AW++GE+W+ + F+ G D
Sbjct: 356 MLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGD 415

Query: 408 LYVTTYARSFNVAPAQ 423
           +Y  + ++ F V   +
Sbjct: 416 IYCASASQMFGVPVEK 431


>gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3]
          Length = 502

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 201/507 (39%), Positives = 287/507 (56%), Gaps = 19/507 (3%)

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             +    G+ L D+  +T QR + ++  + P   ++ + R+++  ++  K   L++++++
Sbjct: 62  QHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSA 120

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358
           DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q
Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N  P 
Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPG 300

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
              +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I+
Sbjct: 301 VKREAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---RSYLNTT--TRQLT 588
           +       ++  V     ++DK  L + LPSGRSL Y          +Y+ T   +R+  
Sbjct: 360 SPGIAFKCRKLSV-----RRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWE 414

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
           R  TYGGK+ ENI Q+ +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L 
Sbjct: 415 RLKTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLS 474

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L++ N  WA  LPL A G+E+ RYRK
Sbjct: 475 KLLSFNSDWAWDLPLSANGFETYRYRK 501


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 178/451 (39%), Positives = 254/451 (56%), Gaps = 15/451 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 6   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +    
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R +AS ++  K   L++ 
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRQQASTTSTSKYKALMKG 303

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 363

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF       G DLY 
Sbjct: 364 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 423

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             YA+++ +   +VTKDQR IGKV+ELA   
Sbjct: 424 LAYAKAYGIEVERVTKDQRQIGKVLELACIA 454



 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 16/266 (6%)

Query: 420 APAQVTKDQRAIGKV-----MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             A      R   K      +    GY GG  AF   A    L+L+  A+    N   + 
Sbjct: 715 DIAHAGPRNRFTIKTDSGHLIVHNCGYGGGVSAFITFALVYSLDLDELANAALPNIPRDV 774

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
             +A+++     +    + + +  +  AC+ +K+ WR+ H    + W EL +     I  
Sbjct: 775 IREAKSWYYESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRTAIAT 833

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTR 589
            +     K      + +++D   L + LPSGR++ Y        N +Y+  N+ +R+  R
Sbjct: 834 PQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQR 888

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
             TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDEI+ E PD+ +++A  +  
Sbjct: 889 LKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQ 948

Query: 650 LMTSNPSWAKGLPLKAEGYESKRYRK 675
           L+ + P WA  +PL A G+ES RYRK
Sbjct: 949 LLATVPDWATSIPLNAGGFESYRYRK 974


>gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 470

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 155/526 (29%), Positives = 242/526 (46%), Gaps = 76/526 (14%)

Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            EI ++LE  P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT
Sbjct: 1   MEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT 60

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
              +++     +LK WL  + G   + L++ +  ++L +    T +  Q+   R   S+S
Sbjct: 61  G--LANPNSPLQLKDWL-QQQGAKTDSLSKASVAQLLQT---TTGKVHQILALRQLLSKS 114

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI---- 342
           +V K   + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  +     
Sbjct: 115 SVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLVKQ 174

Query: 343 --ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
             +T L     S PD   ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ +
Sbjct: 175 GNVTALAMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQE 231

Query: 401 AFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           AF   ED+Y  + ++ F V   +  +  + R  GK+ ELALGY G   A + M       
Sbjct: 232 AFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG------ 285

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A + +        + + WR     + 
Sbjct: 286 ----------------------------------ATKLVLTDDELPPLVQMWRNASPHIV 311

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
           + W ++ +A ++ I   K  + +    +  +Y       + L L SGR L Y    +G N
Sbjct: 312 QFWWDVDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPKPKIGTN 365

Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R    + T       ++  R  TYG KL ENIVQA SRD+LAE M         +V+ +H
Sbjct: 366 RFGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIH 425

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE V + P     +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 426 DEAVIDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469


>gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 567

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 222/573 (38%), Positives = 289/573 (50%), Gaps = 60/573 (10%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F EY + DV   R++ KRL     S  E  LW+LDQTINDRG  VD  LA      V
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L    E+LT G V ++   + L   L  E G+ L D+ + T +R L     L  
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDD-PLLPE 121

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLPR
Sbjct: 122 TVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181

Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P+ S   +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RVL
Sbjct: 182 PTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVL 241

Query: 390 AWMAGEQWKLKAF----------------------------------------ETGEDLY 409
           AW+AGE  KL AF                                          G+D+Y
Sbjct: 242 AWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIY 301

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              YA SF +AP  VTK+QR IGKV ELALGY GG  AF   A+   ++L   A   +  
Sbjct: 302 KRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAA 359

Query: 470 SAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             P   ++A    +W + N  P   + D     AC+  K+AWR  H  ++  W  L  A 
Sbjct: 360 LPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAA 418

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT-- 582
              I + +            + ++  +  L L LPSGR L Y     D     SY+ T  
Sbjct: 419 TDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHP 473

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDE++ E  D   F
Sbjct: 474 ITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           NA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
          Length = 567

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 223/573 (38%), Positives = 288/573 (50%), Gaps = 60/573 (10%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F EY + DV   R++ KRL     S  E  LW+LDQTINDRG  VD  LA      V
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L    E+LT G V ++   + L   L  E G+ L D+ + T +R L     L  
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDD-PLLPE 121

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLPR
Sbjct: 122 TVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181

Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P+ S   +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RVL
Sbjct: 182 PTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVL 241

Query: 390 AWMAGEQWKLKAFE----------------------------------------TGEDLY 409
           AW+AGE  KL AF                                          G+D+Y
Sbjct: 242 AWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIY 301

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              YA SF +AP  VTK QR IGKV ELALGY GG  AF   A+   ++L   A   +  
Sbjct: 302 KRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAA 359

Query: 470 SAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             P   ++A    +W + N  P   + D     AC+  K+AWR  H  ++  W  L  A 
Sbjct: 360 LPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAA 418

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT-- 582
              I + +            + M+  +  L + LPSGR L Y     D     SY+ T  
Sbjct: 419 TDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   F
Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAF 533

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           NA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 130/404 (32%), Positives = 202/404 (50%), Gaps = 17/404 (4%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            TL ID ET S +DL KCG+  YA+     ++LFA+ FDD   ++ D      + + +K 
Sbjct: 7   KTLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKN 66

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           AL +  +   A N+ FERT L     + +    W+CT V +    LP +L+ VG  L LS
Sbjct: 67  ALSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLS 126

Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175
            QK++EGK+LI  F   CK         RN P H  E W+ F  YC  DV V + I ++L
Sbjct: 127 EQKLKEGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQKL 186

Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              P+   E   + LDQ INDRG  VD  L         + +  +      +T   + + 
Sbjct: 187 HKFPIPESEMAFYRLDQEINDRGVLVDRELVEQSITCDLLHKDIVTNRAYEVTG--LENP 244

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             + +LK WL    G+ ++ L++     ++        + ++    R+  ++++V K   
Sbjct: 245 NSVSQLKGWLSER-GVEIDSLSKGAVAELIEDADG---EVLEALKLRLLMAKTSVKKYEA 300

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TSI 350
           +  ++ SDGR+ G LQF GA+RTGRW+G +   QNLP+   S  EL + +          
Sbjct: 301 IERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEELE 360

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                   ++S+ +R+  I  EG + +VAD + IEARVLAW++G
Sbjct: 361 LFYESTPNVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404


>gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 567

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 222/573 (38%), Positives = 288/573 (50%), Gaps = 60/573 (10%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F EY + DV   R++ KRL     S  E  LW+LDQTINDRG  VD  LA      V
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L    E+LT G V ++   + L   L  E G+ L D+ + T +R L     L  
Sbjct: 63  ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDD-PLLPE 121

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLPR
Sbjct: 122 TVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181

Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P+ S   +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RVL
Sbjct: 182 PTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVL 241

Query: 390 AWMAGEQWKLKAFE----------------------------------------TGEDLY 409
           AW+AGE  KL AF                                          G+D+Y
Sbjct: 242 AWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIY 301

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              YA SF +AP  VTK QR IGKV ELALGY GG  AF   A+   ++L   A   +  
Sbjct: 302 KRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAA 359

Query: 470 SAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             P   ++A    +W + N  P   + D     AC+  K+AWR  H  ++  W  L  A 
Sbjct: 360 LPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAA 418

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT-- 582
              I + +            + M+  +  L + LPSGR L Y     D     SY+ T  
Sbjct: 419 TDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDE++ E  D   F
Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           NA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3]
 gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3]
          Length = 656

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 192/715 (26%), Positives = 291/715 (40%), Gaps = 104/715 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLK 58
             LF+DFET S  DLT+ G+ +Y  D     + F F        +LW+      +P+V+ 
Sbjct: 4   RLLFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEV--GQRVPEVIT 61

Query: 59  EALENTDVTIVAHNSYFER----TVLKACFNLDIPIH----RWICTLVLARSNGLPSALK 110
             +       VAHN+ F+     TVL+              +  C+   AR NGLP +L 
Sbjct: 62  RHV-RAGHLFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLA 120

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
              EAL L  QK  EG + +             D    +H E +    +Y   D      
Sbjct: 121 GACEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVG 174

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +++   PL ++EQ  + +D  IN RG  VDV  A  +  +      +LD E+  LT G V
Sbjct: 175 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGV 234

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   +EK+KT+     G  ++D    T ++ +++   L     Q+   R+ ASR+   K
Sbjct: 235 LAVSEVEKIKTY-AATLGEDMDDAGRETLKK-IAARDNLPDSLRQLIELRLDASRAP--K 290

Query: 291 LNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN--LPRPSRSHEELDQIITH 345
            +  +   +  GRL+ +  + GA     T R +G      N   PRP +   + + I+  
Sbjct: 291 KSAAILRAHVGGRLQHSTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDA 349

Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWK 398
                 +  S P+    L  ++D  R    A   G  LV ADL+GIEAR   W+AG+   
Sbjct: 350 CLRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLEL 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AFE G D Y    A  F V    VTKDQR IGKV  LAL Y GGA AF  MA+  G++
Sbjct: 410 LEAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVH 469

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L                              PE            + +   WR       
Sbjct: 470 LP-----------------------------PEQ----------VDEIVLNWRAARPAFE 490

Query: 519 ELWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573
             W+    +    ++  N +  +   R     V    D   L + LPSGR++ Y +    
Sbjct: 491 RWWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFVHDGRALRMQLPSGRAISYHNARLH 550

Query: 574 ------------GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
                            Y+ T  R++         L+ N+ Q ++RD+    +++  +  
Sbjct: 551 LEPGANVPIAIYDKPEGYIETLDRKI---------LSNNMTQGLARDLFWSVLLDVDRV- 600

Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             IV  V+DE + E   +  E     L   M    +W  GLPL AEG+   R+RK
Sbjct: 601 EQIVHHVYDEALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655


>gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43]
 gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43]
          Length = 656

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/704 (25%), Positives = 288/704 (40%), Gaps = 86/704 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFE  S  DLT+ G+ +Y +D     + F F        +LW+  +  V+P+ +   
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWE--YGNVVPKQIVMH 63

Query: 61  LENTDVTIVAHNSYFERTV----LKACFNLDIPIH----RWICTLVLARSNGLPSALKAV 112
           L +  +  VAHN+ F+  +    L+              +  C+   AR NGLP +L   
Sbjct: 64  LTSGGL-FVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 122

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG + +             D    +H E +    +Y   D      ++
Sbjct: 123 CEALGLPVQKDTEGAKWMKEIAANP------DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   PL  +EQ  + +D  IN RG  VDV  A  +  +      +LD E+  LT G + +
Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + K+K +     G  ++D    T ++ +++   L     Q+   R+ ASR+   K +
Sbjct: 237 VTEVAKIKEY-AATLGEDMDDAGRETLKK-IAARDNLPDSLRQLIELRLDASRAP--KKS 292

Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN--LPRPSRSHEELDQIITHL- 346
             +   +  GRL+    + GA     T R +G      N   PRP +   + + I+    
Sbjct: 293 AAILRAHVGGRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDACL 351

Query: 347 --PTSITSDPDP---LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +  S P+    L  ++D  R    A   G  LV ADL+GIEAR+  W+A +  KL+
Sbjct: 352 RGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLE 411

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE G D Y       +++    VTKDQR +GK  +LALG+ G   AF  MA+  G++L 
Sbjct: 412 AFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHLP 471

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                        PE   E          +   WR         
Sbjct: 472 -----------------------------PEQVSE----------IVYNWRAGRPAFERW 492

Query: 521 WNELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN-R 577
           W+    +    ++    + ++   R +   +   KD   L + LPSGR++ Y +   +  
Sbjct: 493 WSLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLE 552

Query: 578 SYLNTTTRQLTREYTY-----GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
              N       +   Y        L+ N  Q +SRD+    +++  +   +IV  ++DE 
Sbjct: 553 PGANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRV-EEIVHHIYDEA 611

Query: 633 VCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E   +        L   M    +W  GLPL AEG+   R+RK
Sbjct: 612 LLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655


>gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2]
 gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2]
          Length = 658

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 180/705 (25%), Positives = 292/705 (41%), Gaps = 87/705 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFE  S  DL   G+ +Y        + F F        +LW+      +P+ +   
Sbjct: 8   LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWEL--GQPIPRQILAH 65

Query: 61  LENTDVTIVAHNSYFERTVLK----ACFNLDIPI----HRWICTLVLARSNGLPSALKAV 112
           +     T VAHN+ F+  +           D+P      +  C+   AR NGLP  L   
Sbjct: 66  IAAGK-TFVAHNAAFDALIWNDVLPRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRA 124

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG   +             +     H E +    +Y   D  V   ++
Sbjct: 125 AEALGLPLQKDREGAAAMKELMHNP------EWTPATHPELFARTYKYALLDTDVMVALW 178

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +  +P+  KEQ  W LD  IN RG+ VDV  A  + ++  + +  +D E+E+ T G + +
Sbjct: 179 EATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKILT 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  ++++++      G  L++    + + +L+ +  +      V   R+ ASR A  K +
Sbjct: 239 TSVIKQIQS-FAAGLGAELDEAGRESVKALLTRD-DVPEVLRDVLTLRLDASR-APKKHD 295

Query: 293 TLVEAMNSDGRLRGTLQFLGA--SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            ++ A + +GR+  +  + GA   R+           N+ RP R   ++   IT+L  + 
Sbjct: 296 AILRA-HVNGRMCHSTVYHGALSGRSTAMGCGDVQLLNVARP-RPGRKVKDTITYLDAAR 353

Query: 351 TSDPD---------PLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
             D D         PL  ++D  R    A + G  LVVADL+GIEAR   W+A ++  L 
Sbjct: 354 RRDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDEGMLV 413

Query: 401 AFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +E G D Y    A  F++     VT DQR IGK+  LAL + GG  A   MA   GL L
Sbjct: 414 EYEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAYGLEL 473

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +                                 +    + +        +R+ H  +S 
Sbjct: 474 SE-------------------------------DLRRKIVWS--------YRESHPALST 494

Query: 520 LWNELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--- 574
            W  L  A    ++      ++   R         +D   L + LPSGR++ Y +     
Sbjct: 495 WWASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPSGRAISYHNARLVL 554

Query: 575 --NNRSYLNTTTRQLTREYTYGGK-LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                + +    +      T   K L+ N+ Q ++RD+  E M++       IV  V+DE
Sbjct: 555 EPGASAPIAVYDKPNGVVETLDRKILSNNMTQGLARDLFWEAMLSVAPV-EQIVHHVYDE 613

Query: 632 IVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ E P+   E     L   ++  P WA GLPL AEG+ S  +RK
Sbjct: 614 VILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658


>gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3]
 gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3]
 gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5]
 gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12]
          Length = 1032

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 147/451 (32%), Positives = 229/451 (50%), Gaps = 21/451 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L ++
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L + +   K + GK LI RF K         R     H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E++K++     S  E  + +LDQ INDRG+ VDVALA    + V   + +L +E +    
Sbjct: 181 EVYKKMPKWGNSEFEDRVLWLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+    L     + +  ++T   +L+  + L   A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLAD-EDLPDDARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346
             K   L+   +SD R RG LQ+ GA RT RW+G  F PQNL R     +ELD+ I  L 
Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G+K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKV 434
           D+Y  T  + F + P  + K++   R IGK 
Sbjct: 417 DIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447



 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 123/285 (43%), Gaps = 45/285 (15%)

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ--------- 486
            EL LGY+GG  AF   A   GL+L   A  +        W        W +         
Sbjct: 748  ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 807

Query: 487  ---ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-------- 535
               ++     I D  +   C+ +K+ WR+ H      W +L       + N         
Sbjct: 808  PGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAGA 867

Query: 536  -------KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS---------- 578
                   +AI   +  +      K     L + LPSGR L Y  +G + +          
Sbjct: 868  HLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRIN 927

Query: 579  --------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                      N  TRQ T  YT+GGK  ENIVQA+ RD+LA  M+N    GY IVL+VHD
Sbjct: 928  TNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVHD 987

Query: 631  EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E+VCETPDT ++  + L  LM + P WA G PL AEG E KRY K
Sbjct: 988  ELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032


>gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1]
 gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1]
          Length = 655

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 181/706 (25%), Positives = 289/706 (40%), Gaps = 87/706 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLK 58
             LF+DFET S  DLT+ G+ +Y +D     + F F        +LW+      +P+ + 
Sbjct: 4   RLLFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEV--GQPVPKQII 61

Query: 59  EALENTDVTIVAHNSYFER----TVLKACFNLDIPIH----RWICTLVLARSNGLPSALK 110
             L  +    VAHN+ F+     TVL+              +  C+   AR NGLP +L 
Sbjct: 62  GHLNGS--PFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLA 119

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
              EAL L  QK  EG + +             D    +H E +    +Y   D      
Sbjct: 120 GACEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFTRTYKYALIDTDAMVG 173

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +++   PL ++EQ  + +D  IN RG  VDV  A  +  +      +LD E+  LT G +
Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   + K+K +     G  ++D    T ++ +++   L     Q+   R+ ASR+   K
Sbjct: 234 LAVTEVAKIKEY-AATLGEDMDDAGRETLKK-IAARDNLPDSLRQLIELRLDASRAP--K 289

Query: 291 LNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN--LPRPSRSHEELDQIITH 345
            +  +   +  GRL+    + GA     T R +G      N   PRP +   + + I+  
Sbjct: 290 KSAAILRAHVGGRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDA 348

Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWK 398
                 +  S P+    L  ++D  R    A   G  LV ADL+GIEAR+  W+A +  K
Sbjct: 349 CLRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPK 408

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AFE G D Y       +++    VTKDQR +GKV +LALG+ GG  AF  MA+  G++
Sbjct: 409 LEAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVH 468

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L                              PE   E          +   WR       
Sbjct: 469 LP-----------------------------PEQVSE----------IVYNWRAGRPAFE 489

Query: 519 ELWNELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             W+    +    ++    + ++   R     +   +D   L + LPSGR++ Y +   +
Sbjct: 490 RWWSLCEYSVLMALDQPGREVVMPVGRDFCSQITFVRDARALRMHLPSGRAISYHNARLH 549

Query: 577 -RSYLNTTTRQLTREYTY-----GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                N       +   Y        L+ N  Q ++RD+    +++  +   +IV  V+D
Sbjct: 550 LEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHHVYD 608

Query: 631 EIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E + E   +        L   M    +W  GLPL AEG+   R+RK
Sbjct: 609 EALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
 gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
          Length = 838

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 198/804 (24%), Positives = 316/804 (39%), Gaps = 140/804 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM------PQV 56
           IDFETRSP D+ K G   Y+ D         +    +  V+LW   H          P  
Sbjct: 41  IDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPTD 100

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC----FNLD-IPIHRWICTLVLARSNGLPSALKA 111
           L   +    +   AHN++FER +        +    I   +W C+   A +  LP +L+ 
Sbjct: 101 LFAFILAGGLVE-AHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLEE 159

Query: 112 VGEALKLSSQKMEEGKELIARFCKGET------HECLYDRNKPNHREAWRLFG------- 158
              A+ L   K  EG++L+ + CK          + ++D        A++  G       
Sbjct: 160 AVAAMDLGIDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIVYHE 219

Query: 159 ---------EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
                    +YCK DV     +   L  LS +E E W +DQ +N RG   D+ +A     
Sbjct: 220 TEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQALS 279

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
           +    R +L+  LE+LT   ++S+     +K WL  E  L L D    T +  L + ++L
Sbjct: 280 MASEWRKRLNSILEALTG--ITSATKRAAVKEWLVEEEDLDLPDTAADTLKHYLEN-EEL 336

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVE-AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           + +A +V       ++++  K N +++ A   D R R  + + GA  TGRW+G      N
Sbjct: 337 SARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGA-GTGRWAGKGIQVHN 395

Query: 329 LPRPSRSHEELDQIITH-----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
            P      ++ D+         L        D +  +S  +R  ++A EG++L+VAD A 
Sbjct: 396 FPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADYAA 455

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQ-----------RAI 431
           IEAR + W A +Q  L  F  G+D+Y       +      ++ KD            R  
Sbjct: 456 IEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCRQF 515

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL--------------------VKTNSA 471
           GK   L LGY  G   F       G+  +    L                    + T  +
Sbjct: 516 GKQAILGLGYGMGYMTFLLTCRKYGITFSRAEVLRIMGPEKLDKTEEWVRKQLCLDTPPS 575

Query: 472 PEEWEDAENF---------CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
               E+A+ +          R       E   + +      +     +R ++ +V  +W+
Sbjct: 576 KMTPEEAKRYSARKRQAARSRRRLIEAREDPAKIVHELALMKHTVDIYRARYPQVKAMWS 635

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYM------------------------------- 551
           +      Q +++        +     + +                               
Sbjct: 636 DQEACAIQAVKSLPTPEELTQLHDNGIELPREVFTASDPVECGKVKWYMSEARTVVDALA 695

Query: 552 ----KKDKNNLILMLPSGRSLVYRDVGNNRSY--------------LNTTTRQLTREYTY 593
                K    L   LPSGR + Y D     +               ++  TR+  R  TY
Sbjct: 696 GTIHVKQGKWLHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTATY 755

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
           GGK+ ENI QAV+RDI+AE M+N+ K G  YD +++VHDE+VCE  + D+ +      LM
Sbjct: 756 GGKIVENITQAVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEVDE-DKGDLEEFETLM 814

Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675
           +  P WA G P+ AE    KRYRK
Sbjct: 815 SDLPIWAAGCPIVAEAERFKRYRK 838


>gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 952

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/331 (34%), Positives = 167/331 (50%), Gaps = 14/331 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL K G+ KYAE  D  ++LFA+  DD  V++ D  +  ++P+ + 
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT++ +   GLP +L+ VGE LKL
Sbjct: 61  SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM EGK LI  F   CK      +  RN P+H  E W  F EY + DV    EI K+
Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIKKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+   E E +++DQ INDRG  +D  L  +  +  ++ R +       LT   + +
Sbjct: 181 LSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIELTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + GL ++ L +   +  L + +       +V   R   S+S+V K +
Sbjct: 239 PNSPMQLKEWLNEK-GLEIDSLAKKDVESALKNAEGD---IKEVLELRQELSKSSVRKYD 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
            +     +D R+RG LQF GA+RTGR+    
Sbjct: 295 AMKNVKGNDKRVRGLLQFYGANRTGRYCLTG 325



 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 174/371 (46%), Gaps = 65/371 (17%)

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKL 376
           SG +   QNL R +    +L + +       + +     P  ++S  +R+  I  EG + 
Sbjct: 631 SGRLIQVQNLRRNNLQDLDLARSLVRNKEYESLEMLYDSPSDVLSQLIRTAFIPKEGCRF 690

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKV 434
           +V+D + IEARVLAW+AGE W L AF+ GED+Y +T ++ F V   +  V  D R  GKV
Sbjct: 691 IVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMFGVPVVKHGVNGDLRQKGKV 750

Query: 435 MELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
             LA GY G   A + M +   GL+ +                                 
Sbjct: 751 ATLACGYGGSVGALKAMGAIEMGLSEDELQS----------------------------- 781

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                       +  +WR+ +  +  LW ++    ++ ++       R + +   + +  
Sbjct: 782 ------------IVDSWREANPNIVSLWWDIDSVVKRVVKT------RSKEEYKNLVISY 823

Query: 554 DKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-------QLTREYTYGGKLTENIVQA 604
           +K  L + LPS R L Y    +G NR    +          +  +  +YGGK  ENIVQA
Sbjct: 824 EKGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVVGNKWDKIESYGGKFVENIVQA 883

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           ++RDILAE MM   K G++IV+ +HDE+V E   +D  +   +  +M+  PSWA GL L 
Sbjct: 884 IARDILAEAMMRLEKKGFNIVMHIHDEVVIE---SDSSSIEEINEIMSLVPSWAPGLILD 940

Query: 665 AEGYESKRYRK 675
           A+G+ES+ Y+K
Sbjct: 941 ADGFESEFYKK 951


>gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e]
 gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e]
          Length = 461

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/451 (32%), Positives = 229/451 (50%), Gaps = 21/451 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L A+
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L + +   K + GK LI RF K         R     H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E++K++     S  E  + +LDQ INDRG+ VDVALA    + V   + +L +E +    
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+    L     + +  ++T   +L+  + L   A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLAD-EDLPDDARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346
             K   L+   +SD R RG LQ+ GA RT RW+G  F PQNL R     +ELD+ I  L 
Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G+K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKV 434
           D+Y  T  + F + P  + K++   R IGK 
Sbjct: 417 DIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447


>gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781]
 gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781]
          Length = 655

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 178/704 (25%), Positives = 284/704 (40%), Gaps = 87/704 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFE  S  DLT+ G+ +Y +D     + F F        +LW+      +P+ +   
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEV--GQPVPKQIVGH 63

Query: 61  LENTDVTIVAHNSYFERT----VLKACFNLDIPIH----RWICTLVLARSNGLPSALKAV 112
           L  +    VAHN+ F+      VL+              +  C+   AR NGLP +L   
Sbjct: 64  LNGS--PFVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 121

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG + +             D    +H E +    +Y   D      ++
Sbjct: 122 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVGVW 175

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   PL  + Q  + +D  IN RG   DV  A  +  +      +LD E+  LT G + +
Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + K+K +     G  ++D    T ++ +++   L     Q+   R+ ASR+   K +
Sbjct: 236 VTEVAKIKEY-AATLGEDMDDAGRETLKK-IAARDNLPDSLRQLIELRLDASRAP--KKS 291

Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN--LPRPSRSHEELDQIITHL- 346
             +   +  GRL+    + GA     T R +G      N   PRP +   + + I+    
Sbjct: 292 AAILRAHVGGRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDACL 350

Query: 347 --PTSITSDPDP---LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +  S P+    L  ++D  R    A   G  LV ADL+GIEARV  W+A +  KL+
Sbjct: 351 RGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLE 410

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE G D Y       +++    VTKDQR +GK  +LALG+ GG  AF  MA+  G++L 
Sbjct: 411 AFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHLP 470

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                        PE   E          +   WR         
Sbjct: 471 -----------------------------PEQVSE----------IVYNWRAGRPAFERW 491

Query: 521 WNELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN-R 577
           W+    +    ++    + ++   R +   +   KD   L + LPSGR++ Y +   +  
Sbjct: 492 WSLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLE 551

Query: 578 SYLNTTTRQLTREYTY-----GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
              N       +   Y        L+ N  Q ++RD+    +++  +   +IV  V+DE 
Sbjct: 552 PGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHHVYDEA 610

Query: 633 VCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E   +        L   M    +W  GLPL AEG+   R+RK
Sbjct: 611 LLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/421 (35%), Positives = 212/421 (50%), Gaps = 19/421 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 6   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +    
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 124

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI  FCK         R     H E WR F  Y   D+   RE++ RL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWN 184

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L++ 
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKEMLAIRLQASTTSTSKYKALMKG 303

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I   P +       L
Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEA-PNAAAKTLKCL 362

Query: 358 QIISDCVRSCVIAS----EGKKLVVADLAGIEARVLAWMAGEQW------KLKAFETGED 407
           QI S  V +    S       KL   D    EA     +    W       LKAF  G  
Sbjct: 363 QIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRH 422

Query: 408 L 408
           L
Sbjct: 423 L 423


>gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68]
          Length = 385

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/379 (36%), Positives = 204/379 (53%), Gaps = 10/379 (2%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 6   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64  TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
            +  +  HNS+F+RTVL+ A   L  P+ RW  T+V A ++GLP +L  + E L +    
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL   +
Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++   +
Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T +R ++    L     ++   R +AS ++  K   L++ 
Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRQQASTTSTSKYKALMKG 303

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L          +
Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 363

Query: 356 PLQIISDCVRSCVIASEGK 374
            +++ S  +R C+IA  GK
Sbjct: 364 IMELTSSALRGCIIAPTGK 382


>gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1]
 gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1]
          Length = 1062

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/467 (31%), Positives = 227/467 (48%), Gaps = 40/467 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           LF+D ET S +DL K G   YAE     +++  +  D+  V+ WDC   P MP+ L++AL
Sbjct: 7   LFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPRELRKAL 66

Query: 62  E----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
                     ++A+   F+R V++  + +D+P+ +   T+++A  + LP +L    + L 
Sbjct: 67  RQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDMQCQVLG 126

Query: 118 LSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + ++  K + GK LI RFCK         R  +  H E W  F  Y   D+   RE++ R
Sbjct: 127 VDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREVYWR 186

Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +     + KE E+  +DQ INDRG+ VDV LA+   + V   + +L +E      G ++ 
Sbjct: 187 IPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERFGGKLTG 246

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  L  L+          + +  ++T   +L        +   +   R+ AS +A  K N
Sbjct: 247 NDFLPILRDI---APAFTIHNAQKSTLNDLLED-PDFPDEGKALIEMRLGASSTASTKYN 302

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS------------------- 333
            LV  +++DGR RG LQ+ GA RT RW+G  F PQNL R                     
Sbjct: 303 PLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESDVS 362

Query: 334 ---RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              RSH   + I + L  +     D  ++ +  VR C+I ++GKK VVAD + +E R LA
Sbjct: 363 FWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRGLA 422

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---KDQRAIGKV 434
           W+AGE+  L  F+ G D+Y  T  + F + P  +    KD R IGK 
Sbjct: 423 WVAGEKTALMVFKAGRDIYCETAGKMFGLDPDYIKANRKDLRQIGKA 469



 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 101/293 (34%), Positives = 134/293 (45%), Gaps = 53/293 (18%)

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH----PE 491
            EL LGY GG  AF + A   GL+L T A ++K       W  A+    + + N     P+
Sbjct: 770  ELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARINEAKRPPK 829

Query: 492  HAIED--------LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN--------- 534
               +D          +   C+ +K+ WR+ H +    W EL  A    I N         
Sbjct: 830  PGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPGKAYWAGA 889

Query: 535  ------GKAIIARKRRDVPLVYMKKDKN-------NLILMLPSGRSLVYR---------- 571
                   KA+   + +        ++++        L + LPSGR + Y           
Sbjct: 890  NVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEI 949

Query: 572  --DVGNNRS-------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              D G  R+         N TTRQ   +YTYGGKLTENIVQA+ RDILA  M     AGY
Sbjct: 950  DEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGY 1009

Query: 623  DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +IVL+VHDE++ E PDTD++    L  LM   P WAKG PL AEG    RYRK
Sbjct: 1010 EIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062


>gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C]
          Length = 686

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 166/724 (22%), Positives = 258/724 (35%), Gaps = 149/724 (20%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICTLVLARSNG 104
               P  L + + N      A N  FE  +             + + +  C +  AR   
Sbjct: 13  GGPKPTDLIDHIANGGPIA-AWNITFEFWIWNMVLAKSEGWPWLQLEQCYCDMAKARRFS 71

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHREAWRLFGEYC 161
           LP +L    +AL+ +++K ++GK+LI + C+                   + +     YC
Sbjct: 72  LPGSLDTAAKALR-TAEKDKKGKQLIGKLCRPVSATKARPEPRWTLYTAPQDYADLYRYC 130

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             DV     +   +  ++  E+E W  DQ IN RG  VDV        IV     +   E
Sbjct: 131 DQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNALDIVGQTTRRFTME 190

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           L ++T G V S   + KL  +L    G  + +L   T    L  +  L P A ++   R 
Sbjct: 191 LAAITNGAVGSVSEVAKLTDFL-ATVGCRMHNLKSETVAETLERD-DLNPTARRILEIRE 248

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             + + V KL +L   ++SDGRLR    F GA  TGRWS      QNL       +  + 
Sbjct: 249 ALAGANVKKLFSLKAQISSDGRLRNQYNFFGA-GTGRWSAGGVQLQNLTSKGPKSKTCNG 307

Query: 342 IITHLPTSITSD----------------------------------------------PD 355
               +  S   +                                               D
Sbjct: 308 CGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLKHRNLDLIIDIWGD 367

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
           P+ ++S C+R   IA+ GKK V  D + IEA VLA +A  +W+++ F T   +Y  + ++
Sbjct: 368 PITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFRTHGKIYEMSASK 427

Query: 416 SFNVAPAQVT----------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
              V   ++             ++++GKV ELA GY G   A++   +      +     
Sbjct: 428 ISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFGAEEHFEDDDA--- 484

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW---- 521
                                                 ++    WR     + E W    
Sbjct: 485 -------------------------------------MKKAILGWRDASPEIVEFWGGQY 507

Query: 522 -------------NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                          L  A    I N       K   V  +      + L   LPSGR L
Sbjct: 508 RRDPYTRKWVREYYGLEGAVIMAILNP-----GKCYAVGDITYAVFDDVLYCRLPSGRFL 562

Query: 569 VYRDVGNNRS-------------YLNTTTRQ----LTREYTYGGKLTENIVQAVSRDILA 611
            Y       S               NT +++      R  TYGG+L EN+ QA + D+ A
Sbjct: 563 QYHQPKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQAAAADVQA 622

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
             M      GY +V+  HDE++ E P  D  +   +  LMT    W +  P++A G+E  
Sbjct: 623 YAMKQCENNGYPVVMHTHDELIAEVP-GDFGSVEEMAALMTGREPWREWWPIRAAGWEDD 681

Query: 672 RYRK 675
           RY+K
Sbjct: 682 RYQK 685


>gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 362

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 130/351 (37%), Positives = 195/351 (55%), Gaps = 8/351 (2%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L+ D ET   I +   G   YAE V V+LFA+   D PV +WD      +P  L++A+ +
Sbjct: 6   LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIAD 64

Query: 64  TDVTIVAHNSYFERTVLKA-CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
            D  +  HNS+F+RTVL+     L  P+ RW  T+V A ++ LP AL A+ E L +    
Sbjct: 65  PDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQDK 124

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI  FCK         R     H   W+ F  Y   D+   RE++KRL   +
Sbjct: 125 AKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKWN 184

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  LW+ DQ INDRG+CVD+ L H   + VD  + +L ++   +T G V ++   +
Sbjct: 185 YQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQRD 244

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            +   +    G+ L D+ ++T +R ++    L P   ++ + R++AS ++  K  TL+++
Sbjct: 245 AMIKHIVESYGVELPDMQKSTIERRIAD-PDLPPAVKELLHIRLQASATSTSKYKTLLKS 303

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           ++SDGRLRGTLQF GASRTGRW+G +F PQNL R S S EE++  I  +  
Sbjct: 304 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMKA 354


>gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46]
          Length = 330

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 173/336 (51%), Gaps = 19/336 (5%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           + ID E  S  D++KCG  KY  AED  +++ A+  D  PV   D       P     + 
Sbjct: 1   MNIDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYET 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L
Sbjct: 61  FKIALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           +L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I 
Sbjct: 121 RLQNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMAIA 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +++  P+++ EQ+ W  DQ INDRG  +  +L    N +    + +L ++ + +T   +
Sbjct: 181 NKIKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQITD--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L TWL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K
Sbjct: 239 ENPNSPTQLLTWLNKEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            N + + M SD R+RG  QF GA  TGRW+G     
Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQL 330


>gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 356

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 110/403 (27%), Positives = 169/403 (41%), Gaps = 66/403 (16%)

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             K   +  A  +D R RG  QF GA+RTGRW+G +   QNLP+      +  + +  + 
Sbjct: 4   KQKYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIG 63

Query: 348 T---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                     D    +S  +R+  IA  G K  VAD + IEARV+A +AGE W+   F+ 
Sbjct: 64  DYDSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKN 123

Query: 405 GEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
           G D+Y  + ++ F+V   +  +    R  GK+ ELALGY G   A + M +   GL  + 
Sbjct: 124 GGDIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALEMGLTEDE 183

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              LV                                           WRQ +  +  LW
Sbjct: 184 LQPLVDA-----------------------------------------WRQSNPNIVALW 202

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY 579
            +   A +  I+               +        L++ LPSGR L Y    +G N+  
Sbjct: 203 WDFDTAIKNAIK------MHCSTASHGIKFTWRSGMLLITLPSGRKLTYVKPRIGENKFG 256

Query: 580 LNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
             +        T++  R   YG K  EN+VQA+SRD+L   M   +     I   VHDE+
Sbjct: 257 GESVTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMKTLSH--CFICGHVHDEL 314

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E   +++ +  +L   M   P W   + L+A+GY ++ Y+K
Sbjct: 315 IIEC--SEKVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355


>gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont
           phage 1]
          Length = 415

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 152/419 (36%), Positives = 228/419 (54%), Gaps = 16/419 (3%)

Query: 162 KGDVTVTREIFKRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             D+  TREI++ L   +    E  LW LDQ IN RG C+DV LA +    V+ E+ +L 
Sbjct: 1   GSDILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLS 60

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
              + LT   V ++   + L   +    G+ L D+  +T QR + ++  + P   ++ + 
Sbjct: 61  TVTQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRI-NDPDIPPALRELLSI 119

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R+++ R++  K   L++++++DGRLRGT QF GASRTGRW+G +F P NLPRP+     +
Sbjct: 120 RLQSCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTI 179

Query: 340 DQIITHLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           D  I  L          D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE W
Sbjct: 180 DNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENW 239

Query: 398 KLKAFET-----GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           K+ AF       G+DLY   YAR+FN+ P  VTK QR IGKVMEL LGY GG  AF   A
Sbjct: 240 KVNAFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFA 299

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L+L   A+    N       +A ++ +   E    + +      T C+ +K+ WR 
Sbjct: 300 LAYSLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRN 358

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            H++    W ++  A +Q I++       ++  V     ++DK+ L + LPSGRSL Y 
Sbjct: 359 AHTQTVSFWYDIEDAVKQAIQSPGVAFKCRKLSV-----RRDKSWLRICLPSGRSLCYP 412


>gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 368

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 132/416 (31%), Positives = 188/416 (45%), Gaps = 67/416 (16%)

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R++ S+++V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  
Sbjct: 1   EIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDT 59

Query: 338 ELDQIITHLPTSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
           EL+     +      D D      P  ++S  VR+   A EG +L V+D + IEARV+AW
Sbjct: 60  ELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAW 119

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQ 449
            A EQW+L  F T   +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A +
Sbjct: 120 YAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALK 179

Query: 450 KMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            M +   G+  N                                             +  
Sbjct: 180 AMGALEMGIEENELQ-----------------------------------------GLVD 198

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           +WR  +  +   W    +A   T+++      RK      +     K  L++ LPSGR+L
Sbjct: 199 SWRNANPNIVNFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRAL 252

Query: 569 VYRD--VGNNR------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            Y    VG N        ++     R+ ++  TYGGKL ENIVQA +RD+LA  +     
Sbjct: 253 AYPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA 312

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            G+ IV  VHDE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 313 LGFKIVGHVHDEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367


>gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 352

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 120/401 (29%), Positives = 179/401 (44%), Gaps = 68/401 (16%)

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
             + V  +    + +  +    R   SRS+V K   +++   +D R  G LQF GA+RTG
Sbjct: 2   AKESVDDALVSASGEVKEALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTG 61

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLP------TSITSDPDPLQIISDCVRSCVIAS 371
           RW+G +   QNLPR         + +             +S PD L   S  +R+  I S
Sbjct: 62  RWAGRLVQVQNLPRNYLPDLAQARSLVRDGNGETLEMLYSSVPDTL---SQLIRTAFIPS 118

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQR 429
           +G + +VAD + IEARVLAW+AGE+  L AF+ GEDLY  T +  F V   +  V  + R
Sbjct: 119 KGHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELR 178

Query: 430 AIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
             GK+  LA GY G   A + M +   GL+ +                            
Sbjct: 179 QKGKIAVLACGYNGSVGALKAMGALKMGLSEDELQ------------------------- 213

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                            +  AWR  +  + +LW+++  A  + I  G+ +       +  
Sbjct: 214 ----------------PIVDAWRAANPNIVQLWHDVDNAATRAISTGRPVT------LGN 251

Query: 549 VYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-------RQLTREYTYGGKLTE 599
           +  +K    L + LPSGR L Y    +G NR    + T       R+  +  TYGGKL E
Sbjct: 252 LGFEKKSGMLFINLPSGRRLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVE 311

Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           NIVQA +RD+L E +     AG+ IV+ +HDE+V + P   
Sbjct: 312 NIVQATARDLLVEAITRIENAGHRIVMHIHDEVVIDEPINS 352


>gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 328

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 132/330 (40%), Positives = 187/330 (56%), Gaps = 16/330 (4%)

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410
            +Q+ S  +R C++A  GKKLVV+DL+ IE R+LAW+AGEQWKL AF       G DLY 
Sbjct: 4   VMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPDLYK 63

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YAR+FN++   VTK QR IGKVMEL LG+ GG  AF   A   GL+L   A     N 
Sbjct: 64  LAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAALPNI 123

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +   +A+ +     +    + + +  +  AC+ +K+ WR+ H    + W +L +    
Sbjct: 124 PRDVQREAKGWYDESVKRKATYGLSER-VFIACDSLKRLWRRAHPETCDFWYQLERTVRT 182

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585
            I         K      + +++D   L + LPSGR+L Y        N +Y+  N+ +R
Sbjct: 183 AIATPA-----KTLYCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGINSYSR 237

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           +  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++CE PDTD++  +
Sbjct: 238 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDYTDA 297

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 298 ALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327


>gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 341

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 93/321 (28%), Positives = 148/321 (46%), Gaps = 32/321 (9%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  + ID ET S +D+ K G+ KYAE  +  ++LFA   D   V ++D     V+P  + 
Sbjct: 4   IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100
           +A+ + DV   A N+ FER  L      + P                     W CT++ +
Sbjct: 64  DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRL 156
              GLP +L+ VG  L L  QKM+EGK+LI  F   CK         RN P H  E W +
Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQKMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKWTV 183

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F  Y K DV V   I ++L   P+     E + LDQ INDRG  VD+ +        +  
Sbjct: 184 FKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVENAIAFDERS 243

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           +  +  E+  LT   + +   + ++K+WL  + G+ +E L +     ++   K       
Sbjct: 244 KATITDEMLGLTD--IDNPNSVSQMKSWLSDQ-GIEVESLGKKVVAEMI---KDAPEDLA 297

Query: 275 QVFNNRMRASRSAVLKLNTLV 295
           QV + R + ++S+V ++  + 
Sbjct: 298 QVLSLRQQLAKSSVNRVGEIP 318


>gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4]
          Length = 773

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 140/395 (35%), Positives = 210/395 (53%), Gaps = 19/395 (4%)

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
            +L    + LT   V ++   + L   +    G+ L D+  +T QR + ++  + P   +
Sbjct: 2   NRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPALRE 60

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           + + R+++  ++  K   L++++++DGRLRGT QF GASRTGRW+G VF P NLPRP+  
Sbjct: 61  LLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLD 120

Query: 336 HEELDQIITHLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              +D  I  L          D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+A
Sbjct: 121 PNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLA 180

Query: 394 GEQWKLKAFET-----GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           GE WK+ AF       G+DLY   YAR+FN+ P  VTK+QR IGKVMEL LGY GG  AF
Sbjct: 181 GENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAF 240

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
              A   GL+L+  A     N       +A  + +   E    + + +    T C+ +K+
Sbjct: 241 LTFALAYGLDLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKR 299

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            WR  H +    W ++  A +Q I++       ++  V     ++DK  L + LPSGRSL
Sbjct: 300 MWRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCRKLSV-----RRDKGWLRICLPSGRSL 354

Query: 569 VYRDVGNN---RSYLNTT--TRQLTREYTYGGKLT 598
            Y          +Y+ T   +R+  R  TYGGKL 
Sbjct: 355 CYPSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI Q+ +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 754

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 755 AWDLPLSANGFETYRYRK 772


>gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5]
          Length = 773

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 213/395 (53%), Gaps = 19/395 (4%)

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
            +L    + LT   V ++   + L   +    G+ L D+  +T QR + ++  + P   +
Sbjct: 2   KRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRE 60

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           + + R+++  ++  K   L++++++DGRLRGT QF GASRTGRW+G VF P NLPRP+  
Sbjct: 61  LLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLD 120

Query: 336 HEELDQIITHLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              +D  I  L          D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+A
Sbjct: 121 PNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLA 180

Query: 394 GEQWKLKAFET-----GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           GE WK+KAF       G+DLY   YAR+FN+ P  VTKDQR IGKVMEL LGY GG  AF
Sbjct: 181 GENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAF 240

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
              A   GL+L+  A     +  P    +A ++ +   E    + + +  I   C+ +K+
Sbjct: 241 LTFALAYGLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEK-IFVNCDSLKR 299

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            WR  H +    W ++  A +Q I++       ++  V     ++DK  L + LPSGRSL
Sbjct: 300 MWRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCRKLSV-----RRDKGWLRICLPSGRSL 354

Query: 569 VYRDVGNN---RSYLNTT--TRQLTREYTYGGKLT 598
            Y          +Y+ T   +R+  R  TYGGKL 
Sbjct: 355 CYPSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389



 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI Q+ +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHW 754

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 755 AWDLPLSANGFETYRYRK 772


>gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 138/370 (37%), Positives = 204/370 (55%), Gaps = 9/370 (2%)

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             +    G+ L D+  +T QR + ++  + P   ++ + R+++  ++  K   L++++++
Sbjct: 62  QHIASAFGITLPDMQASTLQRRI-NDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSA 120

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358
           DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q
Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     N  P 
Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPG 300

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
              +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I+
Sbjct: 301 VKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359

Query: 534 NGKAIIARKR 543
           +       ++
Sbjct: 360 SPGIAFKCRK 369


>gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 204/370 (55%), Gaps = 9/370 (2%)

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             +    G+ L D+  +T QR + ++  + P   ++ + R+++  ++  K   L++++++
Sbjct: 62  QHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSA 120

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358
           DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q
Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N  P 
Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPG 300

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
              +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I+
Sbjct: 301 VKREAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359

Query: 534 NGKAIIARKR 543
           +       ++
Sbjct: 360 SPGIAFKCRK 369


>gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 9/370 (2%)

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             +    G+ L D+  +T QR + ++  + P   ++ + R+++  ++  K   L++++++
Sbjct: 62  QHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSA 120

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358
           DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q
Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     +  P 
Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPG 300

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
              +A ++ +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I+
Sbjct: 301 VKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359

Query: 534 NGKAIIARKR 543
           +       ++
Sbjct: 360 SPGIAFKCRK 369


>gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 203/370 (54%), Gaps = 9/370 (2%)

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             +    G+ L D+  +T QR + ++  + P   ++ + R+++  ++  K   L++++++
Sbjct: 62  QHIASAFGITLPDMQASTLQRRI-NDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSA 120

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358
           DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q
Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N    
Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLG 300

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
              +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I+
Sbjct: 301 VKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359

Query: 534 NGKAIIARKR 543
           +       ++
Sbjct: 360 SPGIAFKCRK 369


>gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 9/370 (2%)

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L 
Sbjct: 2   DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             +    G+ L D+  +T QR + ++  + P   ++ + R+++  ++  K   L++++++
Sbjct: 62  QHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSA 120

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358
           DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q
Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413
           + S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY   Y
Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAY 240

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           AR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     +  P 
Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPG 300

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
              +A ++ +   E    + + +  I   C+ +K+ WR  H +    W ++  A +Q I+
Sbjct: 301 VKREATSWYQKSVETDKTYGLSEK-IFVNCDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359

Query: 534 NGKAIIARKR 543
           +       ++
Sbjct: 360 SPGIAFKCRK 369


>gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1]
 gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 524

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 134/481 (27%), Positives = 206/481 (42%), Gaps = 82/481 (17%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           V+ +     L TWL  + G+  E + +   +++L+    +   A Q    R  A++++  
Sbjct: 91  VTKATKAADLTTWLRDQ-GVETEGVAKAAVRQMLAG--DIEGAARQAVEIRAEAAKASTA 147

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           KL  +V+    DGR RG     GA  TGRW+G +   QNLPR      +L   +      
Sbjct: 148 KLTAMVKCACDDGRARGLHLVYGA-GTGRWAGRLIQLQNLPRGVIKKADLAIPLIIDGDI 206

Query: 350 ---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--- 403
                    PL +IS  +R C+I +EG   + +D + IE R+ AW+A E+WK++AF    
Sbjct: 207 DLVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFD 266

Query: 404 --TGEDLYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             TG DLY+    +   +          + + ++   GKV ELALG+ GG  AFQ MA+ 
Sbjct: 267 AGTGRDLYLIGAEKILTLLKVLYAHPLNENSPERTPYGKVPELALGFGGGVGAFQSMAAI 326

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                                              +++K AWR+ H
Sbjct: 327 YGM---------------------------------------KVTDEEADQIKVAWREAH 347

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            RV  LW  +  A    I N   +++        +        L ++LPSGR L Y    
Sbjct: 348 PRVVALWRNMEDAAFNAISNPGRVVS---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPR 404

Query: 575 NNR--------------------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
             +                      +N+ TR+  R  TYGG L EN +QA++RD+LA  +
Sbjct: 405 IEKRRPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANAL 464

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +    AGY +V+ VHDE + E       +      +M   P+WA GLP+ A G+   RYR
Sbjct: 465 LKLEAAGYPVVIHVHDEALAEVRKGV-GSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYR 523

Query: 675 K 675
           K
Sbjct: 524 K 524


>gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 422

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 159/410 (38%), Positives = 204/410 (49%), Gaps = 57/410 (13%)

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASE 372
            TGRW+G +F P NLPRP+ S   +   I  +          D + + S  +RSC+IA  
Sbjct: 20  YTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPT 79

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAF------------------------------ 402
            KKLVVADL+ IE RVLAW+AGE  KL AF                              
Sbjct: 80  HKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPIT 139

Query: 403 ----------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
                       G+D+Y   YA SF +AP  VTK+QR IGKV ELALGY GG  AF   A
Sbjct: 140 LQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFA 199

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWR 511
           +   ++L   A   +    P   ++A    +W + N  P   + D     AC+  K+AWR
Sbjct: 200 AMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWR 256

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570
             H  ++  W  L  A    I + +            + ++  +  L L LPSGR L Y 
Sbjct: 257 NAHPAIAAFWQALQFAATDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYA 311

Query: 571 ---RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
               D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IV
Sbjct: 312 APRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIV 371

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           LTVHDE++ E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 372 LTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 422

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 159/410 (38%), Positives = 203/410 (49%), Gaps = 57/410 (13%)

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASE 372
            TGRW+G +F P NLPRP+ S   +   I  +          D + + S  +RSC+IA  
Sbjct: 20  YTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPT 79

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFE----------------------------- 403
            KKLVVADL+ IE RVLAW+AGE  KL AF                              
Sbjct: 80  HKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPIT 139

Query: 404 -----------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
                       G+D+Y   YA SF +AP  VTK QR IGKV ELALGY GG  AF   A
Sbjct: 140 LQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFA 199

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWR 511
           +   ++L   A   +    P   ++A    +W + N  P   + D     AC+  K+AWR
Sbjct: 200 AMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWR 256

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570
             H  ++  W  L  A    I + +            + M+  +  L + LPSGR L Y 
Sbjct: 257 NAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYA 311

Query: 571 ---RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
               D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IV
Sbjct: 312 APRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIV 371

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           LTVHDE++ E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 372 LTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 284

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 136/278 (48%), Gaps = 15/278 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++  P+++ EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
             + +     +L  WL  E GL + +L + T Q  L  
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKE 276


>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
 gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
          Length = 901

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 118/614 (19%), Positives = 203/614 (33%), Gaps = 89/614 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQV-----LKEALENT 64
           DL    +  Y E   ++  +F    H          D    P +P+      LK  LE+ 
Sbjct: 328 DLETNSLD-YME-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLARLKPLLEDP 385

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
               V  N  F+R VL    N  I +       +L         L +      + S  ++
Sbjct: 386 RHGKVGQNLKFDRNVLA---NYGIELQGIHHDSMLESYV-----LDSTATRHNMDSLALK 437

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
               L       E       +  P ++        Y   D  ++ ++ +   P   +E+ 
Sbjct: 438 Y---LQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQLHRYFWPRIQQEES 494

Query: 185 LWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L  L Q            +   G  VD     T +  +     KL+QE   L  G   + 
Sbjct: 495 LRRLYQELEIPLIPVLSRMERNGVQVDTTQLKTQSDELAARLKKLEQEAFDLA-GESFNL 553

Query: 234 RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              ++++  L+ +  L +   T T    T + VL       P   ++             
Sbjct: 554 ASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQRLL------------ 601

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                              Q+   S+         P Q  P   R H    Q +T     
Sbjct: 602 -------------------QYRTLSKLKSTYTDRLPLQVNPHTGRVHTSYHQAVTATGRL 642

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +SDP+   I         +R   IA  G +LV AD + IE R++A ++ ++  L AFE 
Sbjct: 643 SSSDPNLQNIPIRTAEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEA 702

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            ED++  T    F     +VT +QR   K +   L Y   A     +    G+N     H
Sbjct: 703 EEDIHQRTATEVFRTPLEEVTPEQRRSAKAINFGLIYGMSA---HGLGRQLGINRTAAQH 759

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +      E +       +   +N  + A +  ++ T   R +      HSR ++  N+ 
Sbjct: 760 YI------ERYFQRYPGVKAYMDNICQQARQKGYVETLFGR-RLYLPDIHSRQTQRRNQA 812

Query: 525 HQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
            +        G A    KR  +    +++K+ +N  +++     LV+         L  T
Sbjct: 813 ERTAINAPMQGSAADIIKRAMIHTDGWLQKNSDNARMIMQVHDELVFE---VAEDKLEIT 869

Query: 584 TRQLTREYTYGGKL 597
            R +    T   +L
Sbjct: 870 MRAIRENMTAAAQL 883


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 117/686 (17%), Positives = 214/686 (31%), Gaps = 150/686 (21%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D     +  Y     ++  +F  +        C HD            +   LK  LEN 
Sbjct: 202 DTETTSLD-YM-QAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQLSLECVLAALKPLLENP 259

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           +   V  N  +++ VL    N DI +       +L     N + +       A     + 
Sbjct: 260 NKHKVGQNLKYDKHVL---LNHDIDLQGIAYDTMLESYVCNSVATRHDMDSLARFYLDRS 316

Query: 123 MEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
               +++   +  K  T   +             +   Y   D  VT ++ + + P   +
Sbjct: 317 TIHFEDVAGKKGAKQLTFNQI----------DIEIAAPYAAEDADVTLQLHQAIWPTLQQ 366

Query: 182 EQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E  L ++ +            I   G  VD  L    +  ++    +L++E   +  G  
Sbjct: 367 EPTLQHVLESIEIPLLPVISRIERNGALVDATLLGQQSIELEQRLKELEKEAFDIA-GEE 425

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L   LF +  L +   T      T + VL       P    +  +R      
Sbjct: 426 FNLSSPKQLGVILFEKLELPIIKKTPKGAPSTAEEVLQELALDYPLPKVLIEHR------ 479

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                    G S+         P    P   R H    Q +T  
Sbjct: 480 -------------------------GLSKLKSTYTDKLPQMINPATGRIHTSYHQAVTAT 514

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +SDP+   I         +R   +A +G K++ AD + IE R++A ++G++  L+A
Sbjct: 515 GRLSSSDPNLQNIPIRNAEGRRIRQAFVAPKGYKILAADYSQIELRIMAHLSGDEGLLEA 574

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F V   QVT++QR   K +   L Y   A     +A   G+  N 
Sbjct: 575 FNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMSAF---GLAKQLGVGRND 631

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +        + +     +   +   + A  D ++ T   R +    + ++R     
Sbjct: 632 AQQYID------VYFERYPGVKSYMDGVRQQAAVDGYVETLEGR-RLYLPEINARNGMRR 684

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +        G A    KR  + +         L    P            + S +N
Sbjct: 685 QAAERTAINAPMQGTAADIIKRAMIAV------DQWLCPTNPK-----------DESAVN 727

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD- 640
                                                     +++ VHDE+V E  ++D 
Sbjct: 728 ----------------------------------------AKMIMQVHDELVLEVKESDL 747

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666
           +     L  +MT+       +PL  +
Sbjct: 748 DAVREKLKRVMTTTVE--LSVPLIVD 771


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 114/693 (16%), Positives = 211/693 (30%), Gaps = 167/693 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVEL---------WDCVHDPVMPQVL---KEALE 62
           D    G+     ++  + FA    +  VE           D      + +VL   K  LE
Sbjct: 355 DTETDGLDTLTVNLVGMSFAIAVGESEVEAAYLPLGHDYLDAPEQLDLHEVLAALKPLLE 414

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120
           + ++  +  N  F+R VL      D+ ++  +   +L     N +         A +   
Sbjct: 415 DANLPKIGQNLKFDRGVLARY---DVALNGIVFDTMLESYVLNSVSGRHDMDSLADRHLG 471

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K    +E+  +  K  T   +                +Y   D  VT  + + + P   
Sbjct: 472 YKTTTFEEIAGKGKKQLTFNQI----------PLEEAAKYAAEDADVTLRLHQVMYPQID 521

Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  L  +   I   G  +D       +  +     +L++    L  G 
Sbjct: 522 SVPTLKSVFQNIEMPLVPVLSRIERTGVLIDAQTLAEHSTEITARLGELEKAAYELA-GE 580

Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF +  L +     +   +T + VL                      
Sbjct: 581 EFNLASPKQLQVILFEKLNLPVLKKTPNGAPSTNEEVLEELADNHELP------------ 628

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L+  G ++         P    P   R H    Q +T 
Sbjct: 629 -------------------RVILEHRGLAKLKSTYTDKLPQMVNPLTKRVHTSYHQAVTA 669

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + DP+   I         +R   IA EG  ++ AD + IE R++A ++ ++  L+
Sbjct: 670 TGRLSSRDPNLQNIPVRNDEGRRIRQAFIAPEGYCIMAADYSQIELRIMAHLSQDKGLLE 729

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F V   +VT +QR   K +   L Y   A    +  S       
Sbjct: 730 AFAQGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFGLIYGMSAFGLSRQLSI------ 783

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                           +A+ +     E +P                             +
Sbjct: 784 -------------PRGEAQRYMDLYFERYP----------------------------GV 802

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +  +Q  E+G                        +    GR L   D+ +     
Sbjct: 803 LAYMERTRQQAAEHG-----------------------FVETLEGRRLYLPDIKS----R 835

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           N   R+ +             +Q  + DI+   M+         +    +++ VHDE+V 
Sbjct: 836 NAMRRKASEREA-----INAPMQGTAADIIKLAMIAVDNWIVSEQPNVRMIMQVHDELVF 890

Query: 635 ETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           E  +++   A   +  LM  +      +PLK +
Sbjct: 891 EVHESELATAEQKISELMEKSMQ--LDVPLKVD 921


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/694 (18%), Positives = 218/694 (31%), Gaps = 168/694 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63
           +D     +  Y     ++  +F  +          HD       +P+      LK  LEN
Sbjct: 348 VDTETTSLD-YM-QAELVGLSFAIEAGKAAYLPLGHDYPGAPSQLPREATLAKLKPLLEN 405

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
            D+  V  N  ++ +VL    N  I +       +L     N + S     G ALK    
Sbjct: 406 PDIKKVGQNLKYDMSVLA---NAGIQLKGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 462

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +E+  +  K  T   +          A      Y   D  +T  + + L P  SK
Sbjct: 463 KNISFEEIAGKGAKQLTFNQI----------ALEQAAPYAAEDADITLRLHQHLWPRLSK 512

Query: 182 EQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E+            L  +   I  RG  +D  L    ++ +  +  +L+Q    +  G  
Sbjct: 513 EEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKIDELEQHAHEIA-GEP 571

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 572 FNLSSTKQLQELFFTKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKIILEHRSL---- 627

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      ++         P     R  R H    Q     
Sbjct: 628 ---------------------------TKLKSTYTDKLPLMINGRTGRVHTSYHQANAAT 660

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +SDP+   I         +R   +A EGK+++ AD + IE R++A ++ ++  L+A
Sbjct: 661 GRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRA 720

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F+VA   VT +QR   K +   L Y   A     +A    +  N 
Sbjct: 721 FAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRN- 776

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                          +A+++     + +P                             + 
Sbjct: 777 ---------------EAQSYIDTYFKRYP----------------------------GVL 793

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             + +      E G       RR               L LP  R         +R+ + 
Sbjct: 794 KYMEETRAMASEQGYVSTLFGRR---------------LYLPEIR---------DRNAM- 828

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVC 634
                  R+           +Q  + DI+ + M+               +++ VHDE+V 
Sbjct: 829 ------RRQAAERA-AINAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDELVF 881

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           E   D  +     +  LM +  S    +PL AE 
Sbjct: 882 EVDADKADALKEKVCELMAAAAS--LDVPLLAEA 913


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/653 (18%), Positives = 207/653 (31%), Gaps = 157/653 (24%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
           L   GF  HP + W    +  +      + +K   EN+ +    HN  ++  VL+   N 
Sbjct: 345 LVGIGFGIHPKKAWYVPLNGKLGKQRVLEGVKPLFENSAIGFYGHNVKYDWHVLQ---NE 401

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLS--SQKMEEGKELIARFCKGETHECLYD 144
            I I       +LA       + +   E L L    +      ELI +         L  
Sbjct: 402 GIQIQNICFDTILASYILNAHSRQHSLEVLALEYFGKVTIPISELIGKG-----KNVLSM 456

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIND 194
           R+ P          EYC  DV  T  + + LE    +          E  L  +   +  
Sbjct: 457 RDVPI-----ERVTEYCCEDVDFTCRLKEVLEKQLKERDLLNLYHQIELPLLVVLAKMER 511

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
           RG  VD+     L++ +  E   L + + ++  G   +    +++   LF++ G+     
Sbjct: 512 RGIYVDIPYLEQLSKELTQELKTLQESIYTMA-GEEFNLNSPKQVSELLFIKLGIPAPKK 570

Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T T   T   VL   K   P A ++   R+                              
Sbjct: 571 TATGHSTSAEVLEFLKNDYPLAGKILEYRLLE---------------------------- 602

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366
              +         P Q +PR  R H   +Q +       + DP+   I         +R 
Sbjct: 603 ---KLRSTYVDALPSQVIPRTHRIHSTFNQSVAATGRLSSQDPNLQNIPIRTEEGRKIRG 659

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
                 EG   + AD + IE R+LA ++ +   + AF+  ED++  T A  F +   QV+
Sbjct: 660 AFRPEKEGWSFLSADYSQIELRLLAHLSQDPVLMAAFQNNEDIHTYTAASMFEIPLEQVS 719

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           K+QR   K +   + Y   A     +A   G+ +   +  +                   
Sbjct: 720 KEQRYQAKAINFGIIYGQQAF---GLARELGIEVKQASKFITMYF--------------- 761

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                         R  ++   L Q+ E     GK++    R  
Sbjct: 762 -----------------------------QRYPKIKEYLDQSKENARATGKSVTLTGRER 792

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +    + K+           R+         R  +NT                    Q  
Sbjct: 793 IIPEILSKNM--------QIRAAA------ERLAVNTPL------------------QGT 820

Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLY-HLM 651
           + D++   M+   +          ++L +HDE++ E PD +    S L   +M
Sbjct: 821 AADLIKMAMLKMDEEIEKQHLKGFMILQIHDELIFEIPDEEISLFSQLVPEVM 873


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 106/613 (17%), Positives = 190/613 (30%), Gaps = 91/613 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64
           D    G+  Y     ++  +F  ++         HD       + +      LK  LE+ 
Sbjct: 348 DTETDGLD-YM-TANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDP 405

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N  F+ ++L      DI +       +L     N +         AL+    K
Sbjct: 406 AQNKVGQNLKFDMSILARY---DINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLEHK 462

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
               +E+  +  K  T   +             + G Y   D  +T  +   L       
Sbjct: 463 NISFEEVAGKGKKQLTFNQI----------DLDVAGPYAAEDADITLRLHNLLNEKVESD 512

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   I   G  +D  L    +  +     +L+ +   +      
Sbjct: 513 EQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDELETKAYEIA-EQEF 571

Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF + GL +         +T + VL       P    +   R       
Sbjct: 572 NLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPLPKILLEYR------- 624

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 625 ------------------------GLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATG 660

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA  G K++  D + IE R++A ++G++  L+AF
Sbjct: 661 RLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAF 720

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G+D++  T A    +    VT +QR   K +   L Y   A     +A   G+  N  
Sbjct: 721 KQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAF---GLAKQLGMGRNEA 777

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +        + +         E+   HA E  ++ T   R +       SR      
Sbjct: 778 QDYMN------VYFERYPGVLEYMESTRVHASEQGYVETLFGR-RLYLPDIKSRNGIRRK 830

Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +A       G A  II R    V     +++   + L++     LV+    +    +
Sbjct: 831 AAERAAINAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQESELDAV 890

Query: 581 NTTTRQLTREYTY 593
           +   R+L      
Sbjct: 891 SADVRRLMELAAE 903



 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------- 617
           GR L   D+ +     N   R+               +Q  + DI+   M+         
Sbjct: 813 GRRLYLPDIKS----RNGIRRKAAERAA-----INAPMQGTAADIIKRAMVLVDEWVEQQ 863

Query: 618 TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
                 +++ VHDE+V E  +++ +  ++ +  LM         +PL A+ 
Sbjct: 864 ETGRVRLLMQVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADA 912


>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
 gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
          Length = 930

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 117/661 (17%), Positives = 212/661 (32%), Gaps = 165/661 (24%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHR 92
           D PV+      + V+ +++K  LE+ ++  +  N  ++  VL+           D  +  
Sbjct: 391 DAPVQ---LPLEEVL-ELMKPILESENILKIGQNLKYDAEVLENYDIELKGIGYDTMLES 446

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           ++   V                A +  + K    +E+  +  K  T   +          
Sbjct: 447 YVLNSVAGM-----GRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTFNQI---------- 491

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDV 201
           A      Y   D  VT  + + L P    E +L ++ Q            +  +G  +D 
Sbjct: 492 ALEEAANYAAEDADVTLLLHQALYPQLEAEPKLNHIFQNIEMPLVPVLVRMERKGVLIDA 551

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---- 257
            +    ++++     +L++E   L  G   +    ++L+T LF +  L +   T +    
Sbjct: 552 NVLAAQSKVITARLAELEKEAFELA-GEEFNLASPKQLQTILFEKLQLPVIKKTPSGAAS 610

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T + VL            +  +R  A                               +  
Sbjct: 611 TNEEVLEELALNHALPKLLLEHRSLA-------------------------------KLK 639

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372
                  P    PR  R H    Q +T      + DP+   I         +R   IA E
Sbjct: 640 STYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARE 699

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G K++ AD + IE R++A ++ ++  L AF  G+D++  T A  F V   QVT DQR   
Sbjct: 700 GYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSA 759

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   L Y   A     +A   G+                    A+ +     E +P  
Sbjct: 760 KAINFGLIYGMSAF---GLARQLGIPRGE----------------AQRYMDLYFERYP-- 798

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                                      +   +     Q  E G                 
Sbjct: 799 --------------------------GVLRYMENTRLQASEQG----------------- 815

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                  +    GR L   D+ ++    N   R+               +Q  + DI+ +
Sbjct: 816 ------YVETLEGRRLYLADIKSS----NGMRRKAAEREA-----INAPMQGTAADIIKK 860

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
            M+         K   D+++ VHDE+V E  +++ E   + +  LM  +      +PLK 
Sbjct: 861 AMIAVDNWLQTEKPHADMLMQVHDELVFEVKESELERVQAQVQSLMEQSMK--LDVPLKV 918

Query: 666 E 666
           +
Sbjct: 919 D 919


>gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 122/709 (17%), Positives = 214/709 (30%), Gaps = 180/709 (25%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56
           D ET + +D  K           ++  +F             HD            + Q 
Sbjct: 337 DTET-TSLDYMKA---------QLVGMSFAVKAGEAVYLPLAHDYPGAPEQLSLEFVMQK 386

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           L   L + +   V  N  ++++VL    N    ++      +L     N + +       
Sbjct: 387 LGPILADENKAKVGQNLKYDKSVLA---NAGFALNGIKFDTMLESYVFNSVGTRHDMDSL 443

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           ALK    K    +++  +  K  T   +                 Y   D  +T  + + 
Sbjct: 444 ALKYLGHKNISFEDIAGKGKKQLTFNQI----------ELEKAAPYAAEDADITLRLHEV 493

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   I   G  +D  +    +  +     +L++E  
Sbjct: 494 LWPKIAADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLAAHSMRLGERLIELEKEAF 553

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+  LF + GL +   T      T + VL       P    +  +
Sbjct: 554 EIA-GEPFNLSSPKQLQVLLFEKLGLPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIEH 612

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P     +  R H   
Sbjct: 613 R-------------------------------GLSKLKSTYTDKLPLMVNEKTQRVHTSY 641

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q IT      ++DP+   I         +R   IA++G K+V AD + IE R++A ++ 
Sbjct: 642 HQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQ 701

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G D++  T A  F V    VT D R   K +   L Y   A     +A  
Sbjct: 702 DKGLLNAFANGLDVHSATAAEVFGVELDDVTTDMRRKAKAVNFGLIYGMSAF---GLARQ 758

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +  +   H +      + +E       +M E   E A E+ ++               
Sbjct: 759 LDVPRHEAQHYID-----KYFERFPGVLEYM-ETTREKAAENGYV--------------- 797

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDV 573
                                + I  R+                   LP   +    R  
Sbjct: 798 ---------------------ETIFGRRLH-----------------LPEINARNGARRK 819

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVL 626
           G  R+ +N                     Q  + DI+ + M++  +           +++
Sbjct: 820 GAERAAINAPM------------------QGTAADIIKKAMLSVNRWVHEQAPNTIKLLM 861

Query: 627 TVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E       E+    +  LM+     A  +PL  E  E   +
Sbjct: 862 QVHDELVFEIKTDCAPEYT-KHICELMSQAA--ALDVPLIVEADEGDNW 907


>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
 gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
          Length = 938

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/674 (17%), Positives = 212/674 (31%), Gaps = 164/674 (24%)

Query: 33  FAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKA 82
            +F   +         HD    PQ L  A         LE+ +   V  N  ++ +V+  
Sbjct: 380 VSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQLKPLLEDENKAKVGQNLKYDASVIAR 439

Query: 83  CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              +++   R   T++ +   N +         AL+         +++  +     T   
Sbjct: 440 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190
           +            +   +Y   D  VT  + +R+ PL  +           E  L  +  
Sbjct: 498 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLS 547

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D  L    +Q + +   +L+++   L  G   +    ++L+T LF +  L 
Sbjct: 548 RIERTGVMIDDMLLSAQSQEIALRLDELEKKAYELA-GQPFNLSSPKQLQTILFEQMKLP 606

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +                              
Sbjct: 607 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 636

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            +++ G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 637 -IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 695

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V  
Sbjct: 696 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 755

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+                    A+ +
Sbjct: 756 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGE----------------AQEY 796

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                E +P               V +      SR         Q + +TI         
Sbjct: 797 MDKYFERYP--------------GVMQYMEDTRSR------AAEQGYVETIF-------- 828

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                  GR L   ++         T+R   R            
Sbjct: 829 -----------------------GRRLHLPEI---------TSRNGMRRKAAERAAINAP 856

Query: 602 VQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTS 653
           +Q  + DI+ + M+               +++ VHDE+V E  ++      + +  LM S
Sbjct: 857 MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIEIKVQELMES 916

Query: 654 NPSWAKGLPLKAEG 667
               A  +PL A+ 
Sbjct: 917 AAELA--VPLVADA 928


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 117/598 (19%), Positives = 207/598 (34%), Gaps = 99/598 (16%)

Query: 7   DFETRS----PIDL------TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S      ++      T  G+  Y      +  A  + D P +      + V+   
Sbjct: 355 DLETDSLDTLSANIIGLSFATAPGVAAY------LPVAHDYLDAPAQ---LDRNDVL-AR 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LEN     V  N  F+R VLK+    DI +       +L     N +         
Sbjct: 405 LKPLLENPQALKVGQNLKFDRGVLKSY---DIELQGIRFDTMLESYALNSVIGRHDMDTL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+  + K    +E+  +  K  T   +          A    G Y   D  VT ++  +
Sbjct: 462 ALRWLNHKTVTFEEIAGKGKKQLTFNQI----------ALEQAGHYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   KEQ            L  +   I   G  +D  +  T +Q +     +L+Q+  
Sbjct: 512 MWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQGILATHSQELGSRLAELEQKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF + G+     T     +T + VL+      P    +  +
Sbjct: 572 ELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEH 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P    P   R H   
Sbjct: 631 R-------------------------------GLSKLKSTYTDKLPLMINPHSGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I         +R   IA  G ++V AD + IE R++A ++ 
Sbjct: 660 HQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPPGYRIVAADYSQIELRIMAHLSQ 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF + +D++  T A  F V+  +V+ +QR   K +   L Y   +     ++  
Sbjct: 720 DKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSSF---GLSRQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +        +E      ++M E+  E A E  ++ T  +  +      +
Sbjct: 777 LNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAEKGYVST-LDGRRLYLPDIN 829

Query: 515 SRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +  +       +A       G A  II R    V     ++   ++ +++     LV+
Sbjct: 830 ASNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVHDELVF 887


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 115/650 (17%), Positives = 204/650 (31%), Gaps = 158/650 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           Q L   L +     V  N  ++++VL    N    ++      +L     N + +     
Sbjct: 385 QKLGPILADAKKAKVGQNLKYDKSVLA---NAGYQLNGIKFDTMLESYVLNSVGTRHDMD 441

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             ALK    K    +++  +  K  T   +               G Y   D  +T  + 
Sbjct: 442 SLALKFLGHKNISFEDIAGKGKKQLTFNQV----------ELDKAGPYAAEDADITLRLH 491

Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E  L  +   I   G  +D  +    +Q +     +L++E
Sbjct: 492 QVLWPKLAADEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAHSQRLGERLLELEKE 551

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+  LF +  L +   T      T + VL       P    + 
Sbjct: 552 AYEIA-GEPFNLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPLPKVII 610

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R                               G S+         P     +  R H 
Sbjct: 611 EHR-------------------------------GLSKLKSTYTDKLPLMVNEKTQRVHT 639

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA++G K+V AD + IE R++A +
Sbjct: 640 SYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHL 699

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G D++  T A  F V+  +VT D R   K +   L Y   A     +A
Sbjct: 700 SQDKGLLSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNFGLIYGMSAF---GLA 756

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +  +   H +      + +E       +M E   E A E  ++             
Sbjct: 757 RQLDVPRHEAQHYID-----KYFERFPGVLEYM-ETTREKAAESGYV------------- 797

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YR 571
                                  + I  R+                 L LP  ++    R
Sbjct: 798 -----------------------ETIFGRR-----------------LYLPEIKAQNGAR 817

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------I 624
             G  R+ +N                     Q  + DI+ + M++     Y+       +
Sbjct: 818 RKGAERAAINAPM------------------QGTAADIIKKAMLSVHSWVYEQAPNTVKL 859

Query: 625 VLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++ VHDE+V E   D  +     +  LM+   +    +PL  E  E   +
Sbjct: 860 LMQVHDELVFEIKTDCVDAYTKHICELMSQAAT--LDVPLIVEADEGDNW 907


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/688 (16%), Positives = 199/688 (28%), Gaps = 155/688 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D    G+  Y     V+  +F  ++         HD            +   LK  LE+ 
Sbjct: 349 DTETDGLD-YM-TANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRDWVLAQLKPLLEDP 406

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           +   +  N  F+ +++       I +   +   +L     N +         AL+    K
Sbjct: 407 NQAKIGQNLKFDASIVARY---GIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHK 463

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
               +E+  +  K  T   +               G Y   D  +T  +   L P     
Sbjct: 464 NISFEEIAGKGKKQLTFNQI----------DLAQAGPYAAEDADITLRLHNALYPKVEAD 513

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                   + E  L  +   +   G  VD  L    +  +     +L+++   +      
Sbjct: 514 EKLKHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAARLDELEKKAFEIAD-QEF 572

Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF + GL +       T +T + VL       P    +   R       
Sbjct: 573 NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLILEYR------- 625

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 626 ------------------------GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATG 661

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   +A  G K++  D + IE R++A ++G++  L AF
Sbjct: 662 RLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAF 721

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T A    +   QV+ +QR   K +   L Y   A     +A    +  N  
Sbjct: 722 RHGKDIHAATAAEILGLDIEQVSSEQRRRAKAINFGLIYGMSAF---GLAKQLDMGRNEA 778

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +  N   E +     +    +    E    +   G              SR      
Sbjct: 779 QDYM--NVYFERYPGVLEYMESTRNTASEKGYVETLFGRRL-----YLPDIKSRNGLRRK 831

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +A       G A    K   +                                    
Sbjct: 832 AAERAAINAPMQGTAADIIKLAMI------------------------------------ 855

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-E 641
                           +N VQ   +D +   M             VHDE+V E  ++  E
Sbjct: 856 --------------AVDNWVQQQPQDEVRLLM------------QVHDELVFEVKESALE 889

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAE-GY 668
              + +  LM    +    +PL A+ G+
Sbjct: 890 SVTAEVKALMEQAAT--LDVPLIADAGF 915


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
          Length = 921

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63
           +D     +  Y     ++  +F  +          HD           V  + L+  LE+
Sbjct: 346 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQINKTVALEKLRPLLED 403

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
             +  V  N  ++ ++L    N  I +       +L     N + S     G ALK    
Sbjct: 404 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 460

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +E+  +  K  T   +                 Y   D  +T  + + L P   K
Sbjct: 461 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 510

Query: 182 EQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E EL  +              I  +G  +D  L    +  +  +   L+++   +  G  
Sbjct: 511 EAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 569

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 570 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 625

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      S+         P     +  R H    Q     
Sbjct: 626 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 658

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA +G+K++ AD + IE R++A ++ +   LKA
Sbjct: 659 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 718

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F     +VT +QR   K +   L Y   A     +A    +  + 
Sbjct: 719 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 775

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +       R+M+E                                  
Sbjct: 776 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 797

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580
               +A    +     +  R+                 L LP  R     R  G  R+ +
Sbjct: 798 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 836

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633
           N                     Q  + DI+ + M+N        T+    +++ VHDE+V
Sbjct: 837 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 878

Query: 634 CETP-DTDEFNASMLYHLMTSN 654
            E   D  E     +  LM   
Sbjct: 879 FEVDADKAEALKKTICTLMAQA 900


>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
 gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
          Length = 934

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/640 (17%), Positives = 203/640 (31%), Gaps = 157/640 (24%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAVG 113
           K  LEN  +  +  N  ++  VL    N DI +       +L                  
Sbjct: 410 KPILENEKIGKIGQNLKYDAEVL---LNYDIELKGIAFDTMLESYVLNSVAGMGRHDMDS 466

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A +  + K    +E+  +  K  T   +                 Y   D  VT  + +
Sbjct: 467 LADRHLNHKTVSFEEIAGKGKKQLTFNQI----------PLEQAANYAAEDADVTLLLHQ 516

Query: 174 RLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P    E +L ++ Q            +  +G  +D A+    +Q++     +L+++ 
Sbjct: 517 ALYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAAVLTAQSQVITARLAELEKQA 576

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L+T LF +  L +   T +    T + VL            +  
Sbjct: 577 FDLA-GEEFNLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNHALPKLLLE 635

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R  A                               +         P    PR  R H  
Sbjct: 636 HRSLA-------------------------------KLKSTYTDKLPLMINPRTQRVHTS 664

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      + DP+   I         +R   +A +G K++ AD + IE R++A ++
Sbjct: 665 YHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFVARDGYKVMAADYSQIELRIMAHLS 724

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF  G+D++  T A  F V   +VT DQR   K +   L Y   A     +A 
Sbjct: 725 QDKGLLTAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMSAF---GLAR 781

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+                   +A+ +     E +P                       
Sbjct: 782 QLGIPRG----------------EAQRYMDLYFERYP----------------------- 802

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                 +   +     Q  E G                        +    GR L   D+
Sbjct: 803 -----GVLRYMENTRLQASERG-----------------------YVETLEGRRLYLADI 834

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
            ++    N   R+               +Q  + DI+ + M+         K   D+++ 
Sbjct: 835 KSS----NGMRRKAAEREA-----INAPMQGTAADIIKKAMIAVDNWLETEKPSADMLMQ 885

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  +++ E   + +  LM  + +    +PLK E
Sbjct: 886 VHDELVFEVKESELEKVQAKVQELMEQSMT--LDVPLKVE 923


>gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1]
 gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 516

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 131/456 (28%), Positives = 200/456 (43%), Gaps = 81/456 (17%)

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
           T+   +++L+    +   A Q    R  A++++  KL  +V+    DGR RG     GA 
Sbjct: 107 TKAAVRQMLAG--DIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGA- 163

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIAS 371
            TGRW+G +   QNLPR S    +L   +               PL +IS  +R C+I +
Sbjct: 164 GTGRWAGRLIQLQNLPRGSVKKADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPA 223

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNV------- 419
           EG   + +D + IE R+ AW+A E+WK++AF      TG DLY+    +   +       
Sbjct: 224 EGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVPYAH 283

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              + ++++   GKV ELALG+ GG  AFQ MA+  G+                      
Sbjct: 284 PLNENSQERTPYGKVPELALGFGGGVGAFQSMAAIYGM---------------------- 321

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                   +++K AWR+ H RV  LW  +  A    I N   ++
Sbjct: 322 -----------------KVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVV 364

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-----------DVGNNRSYL-------- 580
           +        +        L ++LPSGR L Y            ++G +   L        
Sbjct: 365 S---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMS 421

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            N+ TR+  R  TYGG L EN +QA++RD+LA  ++    AGY +V+ VHDE + E    
Sbjct: 422 VNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEIRKG 481

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              +      +M   P+WA GLP+ A G+   RYRK
Sbjct: 482 V-GSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 516


>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
 gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
          Length = 934

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 119/681 (17%), Positives = 209/681 (30%), Gaps = 168/681 (24%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
           T+ G   Y      +  A  + D PV+      D V+ Q LK  LE+     V  N  F+
Sbjct: 380 TEAGKAAY------LPVAHDYLDAPVQ---LDRDEVLKQ-LKPILEDEKQLKVGQNLKFD 429

Query: 77  RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
           R VL      DI +       +L     + +         A +    K    +E+  +  
Sbjct: 430 RGVL---LRYDIELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSFEEIAGKGK 486

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQ 183
              T   +          A      Y   D  VT ++ + L P            +  E 
Sbjct: 487 NQLTFNQI----------ALEQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEM 536

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   I   G  +D  +    ++ + +   +L+ +   L      +    ++L+  L
Sbjct: 537 PLVPVLSHIERTGVLIDQNILAAHSKELAIRLNELENKAHELA-EEPFNLSSTKQLQAIL 595

Query: 244 FLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           + +  L +   T     +T + VL+      P    +   R                   
Sbjct: 596 YEKQKLPILKKTPGGAPSTNEEVLAELALDYPLPKVILEYR------------------- 636

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                       G ++         P    P+  R H    Q +T      +SDP+   I
Sbjct: 637 ------------GLAKLKSTYTDKLPLMINPQSGRVHTSYHQAVTATGRLSSSDPNLQNI 684

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   IA +   ++ AD + IE R++A ++ ++  LKAF  G+D++  T A
Sbjct: 685 PVRNDEGRRIRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFAEGKDIHRATAA 744

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F     +V+ +QR   K +   L Y   A     ++    +                 
Sbjct: 745 EVFGTPLEKVSGEQRRSAKAINFGLIYGMSAF---GLSRQLNIPRKESQ----------- 790

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                            +       R   +   + +   Q  E 
Sbjct: 791 ---------------------------------RYMDLYFERYPGVLEYMERTRTQASEQ 817

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTY 593
           G       RR               L LP  +S    R  G  R+ +N            
Sbjct: 818 GYVETLDGRR---------------LYLPDIKSSNAMRRKGAERAAINAPM--------- 853

Query: 594 GGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDEFNAS 645
                    Q  + DI+   M++              I++ VHDE+V E   D  E  + 
Sbjct: 854 ---------QGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEVHKDDVEVASE 904

Query: 646 MLYHLMTSNPSWAKGLPLKAE 666
            + +LM ++ + A  +PLK +
Sbjct: 905 KIRNLMEASMTLA--VPLKVD 923


>gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183]
 gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175]
 gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183]
 gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175]
          Length = 921

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63
           +D     +  Y     ++  +F  +          HD           V  + L+  LE+
Sbjct: 346 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLED 403

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
             +  V  N  ++ ++L    N  I +       +L     N + S     G ALK    
Sbjct: 404 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 460

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +E+  +  K  T   +                 Y   D  +T  + + L P   K
Sbjct: 461 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 510

Query: 182 EQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E EL  +              I  +G  +D  L    +  +  +   L+++   +  G  
Sbjct: 511 EAELAAMFIEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 569

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 570 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 625

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      S+         P     +  R H    Q     
Sbjct: 626 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 658

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA +G+K++ AD + IE R++A ++ +   LKA
Sbjct: 659 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 718

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F     +VT +QR   K +   L Y   A     +A    +  + 
Sbjct: 719 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 775

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +       R+M+E                                  
Sbjct: 776 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 797

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580
               +A    +     +  R+                 L LP  R     R  G  R+ +
Sbjct: 798 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 836

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633
           N                     Q  + DI+ + M+N        T+    +++ VHDE+V
Sbjct: 837 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 878

Query: 634 CETP-DTDEFNASMLYHLMTSN 654
            E   D  E     +  LM   
Sbjct: 879 FEVDADKAEALKKTICTLMAQA 900


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63
           +D     +  Y     ++  +F  +          HD           V  + L+  LE+
Sbjct: 360 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLED 417

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
             +  V  N  ++ ++L    N  I +       +L     N + S     G ALK    
Sbjct: 418 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 474

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +E+  +  K  T   +                 Y   D  +T  + + L P   K
Sbjct: 475 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 524

Query: 182 EQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E EL  +              I  +G  +D  L    +  +  +   L+++   +  G  
Sbjct: 525 EAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 583

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 584 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 639

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      S+         P     +  R H    Q     
Sbjct: 640 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 672

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA +G+K++ AD + IE R++A ++ +   LKA
Sbjct: 673 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 732

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F     +VT +QR   K +   L Y   A     +A    +  + 
Sbjct: 733 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 789

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +       R+M+E                                  
Sbjct: 790 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 811

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580
               +A    +     +  R+                 L LP  R     R  G  R+ +
Sbjct: 812 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 850

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633
           N                     Q  + DI+ + M+N        T+    +++ VHDE+V
Sbjct: 851 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 892

Query: 634 CETP-DTDEFNASMLYHLMTSN 654
            E   D  E     +  LM   
Sbjct: 893 FEVDADKAEALKKTICTLMAQA 914


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63
           +D     +  Y     ++  +F  +          HD           V  + L+  LE+
Sbjct: 346 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLED 403

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
             +  V  N  ++ ++L    N  I +       +L     N + S     G ALK    
Sbjct: 404 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 460

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +E+  +  K  T   +                 Y   D  +T  + + L P   K
Sbjct: 461 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 510

Query: 182 EQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E EL  +              I  +G  +D  L    +  +  +   L+++   +  G  
Sbjct: 511 EAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 569

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 570 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 625

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      S+         P     +  R H    Q     
Sbjct: 626 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 658

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA +G+K++ AD + IE R++A ++ +   LKA
Sbjct: 659 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 718

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F     +VT +QR   K +   L Y   A     +A    +  + 
Sbjct: 719 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 775

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +       R+M+E                                  
Sbjct: 776 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 797

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580
               +A    +     +  R+                 L LP  R     R  G  R+ +
Sbjct: 798 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 836

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633
           N                     Q  + DI+ + M+N        T+    +++ VHDE+V
Sbjct: 837 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 878

Query: 634 CETP-DTDEFNASMLYHLMTSN 654
            E   D  E     +  LM   
Sbjct: 879 FEVDADKAEALKKTICTLMAQA 900


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
          Length = 921

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63
           +D     +  Y     ++  +F  +          HD           V  + L+  LE+
Sbjct: 346 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLED 403

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
             +  V  N  ++ ++L    N  I +       +L     N + S     G ALK    
Sbjct: 404 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 460

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +E+  +  K  T   +                 Y   D  +T  + + L P   K
Sbjct: 461 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 510

Query: 182 EQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E EL  +              I  +G  +D  L    +  +  +   L+++   +  G  
Sbjct: 511 EAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 569

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 570 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 625

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      S+         P     +  R H    Q     
Sbjct: 626 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTNYHQANAAT 658

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA +G+K++ AD + IE R++A ++ +   LKA
Sbjct: 659 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 718

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F     +VT +QR   K +   L Y   A     +A    +  + 
Sbjct: 719 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 775

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +       R+M+E                                  
Sbjct: 776 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 797

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580
               +A    +     +  R+                 L LP  R     R  G  R+ +
Sbjct: 798 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 836

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633
           N                     Q  + DI+ + M+N        T+    +++ VHDE+V
Sbjct: 837 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 878

Query: 634 CETP-DTDEFNASMLYHLMTSN 654
            E   D  E     +  LM   
Sbjct: 879 FEVDADKAEALKKTICTLMAQA 900


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 109/589 (18%), Positives = 194/589 (32%), Gaps = 90/589 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           DL    +  Y E   ++  +F             HD            +   L+  L+++
Sbjct: 328 DLETNSLD-YIE-AEIVGLSFAIKPKEAAYVPLAHDYDAAPLQLAREGVLARLQPLLQDS 385

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           +   V  N  F+R VL    N  I +       +L     +   S       ALK   + 
Sbjct: 386 NRGKVGQNLKFDRNVLA---NYGIELEGIRHDSMLESYVLHSTASRHNMDSLALKYLQRS 442

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +E+  +  K            P ++        Y   D  +  ++     P   +E
Sbjct: 443 TISYEEVAGKGAKQ----------LPFNQVPIDKATRYAAEDADICLQLHHYFWPRLQQE 492

Query: 183 QELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           + L  L Q            +   G  +D       +  +     K++QE   L  G   
Sbjct: 493 EALCRLYQELEIPLIPVISRMERNGVQIDATQLKAHSAELTARLEKIEQEAFELA-GEPF 551

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++++  L+ +  L +   T T    T + VL       P    +   R       
Sbjct: 552 NLASPKQIQAILYDKLKLPITRKTPTGQPSTAETVLQELALDYPLPQLLLEYR------- 604

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                     S+         P Q  PR  R H    Q +T   
Sbjct: 605 ------------------------ALSKLKSTYTDRLPLQVNPRTGRVHTSYHQAVTATG 640

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA  G  L+ AD + IE R++A ++ ++  L AF
Sbjct: 641 RLSSSDPNLQNIPIRSAEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAF 700

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           E GED++  T A  F      VT +QR   K +   L Y   A     +A   G++ +  
Sbjct: 701 EAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSA---HGLAQQLGISRSAA 757

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
            H +      E +       +   +   + A +  ++ T   R +    + HSR ++  N
Sbjct: 758 QHYI------ERYFHRYPGVKAYMDAICQQARQKGYVETLFGR-RLYLPEIHSRQAQRRN 810

Query: 523 ELHQAFEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVY 570
           +  +        G A    KR  +    +++K  +N  +++     LV+
Sbjct: 811 QAERMAINAPMQGTAADIIKRAMLRADQWLQKQGSNARMIMQVHDELVF 859


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 103/562 (18%), Positives = 190/562 (33%), Gaps = 79/562 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+  +  V  N  ++R VLK   N DI +       +L     + + S     
Sbjct: 402 ERLKPLLEDPALLKVGQNLKYDRGVLK---NYDIELQGIKFDTMLESYALSSVGSRHDMD 458

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +  + K    +E+  +  K  T   +                 Y   D  VT ++ 
Sbjct: 459 TLSSRWLNHKTVSFEEIAGKGKKQLTFNQI----------DLEQAAHYAAEDADVTLQLH 508

Query: 173 KRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   KEQ            L  +   I   G  +D  +    ++ + +   +L+Q+
Sbjct: 509 LKMWPELEKEQGPKEVFENIEMPLLTVISRIERNGVLIDQGILAAHSKELTIRLAELEQK 568

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              L  G   +    ++L+T LF + G+     T     +T + VL+      P    + 
Sbjct: 569 AHELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVIL 627

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            NR                               G ++         P    P   R H 
Sbjct: 628 ENR-------------------------------GLAKLKSTYTDKLPLMINPITGRVHT 656

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IAS+G K+V AD + IE R++A +
Sbjct: 657 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIASKGHKIVAADYSQIELRIMAHL 716

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G D++  T A  F +A  +VT +QR   K +   L Y   A     ++
Sbjct: 717 SQDKGLLSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINFGLIYGMSAF---GLS 773

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +        +        +E       +M E+  + A E  ++ T  +  +     
Sbjct: 774 RQLNIGAGEAKKYMDL-----YFERYPGVLEYM-ESTRQQAAEKGYVST-LDGRRLYLPD 826

Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            ++  +       +A       G A  II +    V      +   ++ +++     LV+
Sbjct: 827 INASNAMRRKAAERAAINAPMQGTAADIIKKAMIAVDGWLTPQSAPDVKMIMQVHDELVF 886

Query: 571 RDVGNNRSYLNTTTRQLTREYT 592
               +         R L     
Sbjct: 887 EVKTSEVEAATAKIRDLMENSM 908


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
          Length = 911

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 122/687 (17%), Positives = 215/687 (31%), Gaps = 168/687 (24%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
           K G   Y      +  A  + D P +L        + Q L   L + +   V  N  +++
Sbjct: 358 KAGEAAY------LPVAHDYPDAPEQL----SLEFVMQKLGPILADANKAKVGQNLKYDK 407

Query: 78  TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
           +VL    N    ++      +L     N + +       ALK    K    +++  +  K
Sbjct: 408 SVLA---NAGYELNGIKFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEDIAGKGKK 464

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQE 184
             T   +                 Y   D  +T  + + L P               E  
Sbjct: 465 QLTFNQI----------ELDKAAPYAAEDADITLRLHEVLWPKIEADEKLKSVFEDIEMP 514

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   I   G  +D ++    +Q +     +L++E   +  G   +    ++L+  LF
Sbjct: 515 LVSVISDIERTGVAIDSSMLGAHSQRLGERLIELEKEAFEIA-GEPFNLSSPKQLQVLLF 573

Query: 245 LETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            +  L +   T      T + VL       P    +  +R                    
Sbjct: 574 EKLELPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIEHR-------------------- 613

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                      G S+         P     +  R H    Q +T      ++DP+   I 
Sbjct: 614 -----------GLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIP 662

Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R   IA++G K+V AD + IE R++A ++ ++  L AF  G D++  T A 
Sbjct: 663 IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAE 722

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V    VT D R   K +   L Y   A     +A    +  +   H +      + +
Sbjct: 723 VFGVDLDDVTTDMRRKAKAVNFGLIYGMSAF---GLARQLDVPRHEAQHYID-----KYF 774

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
           E       +M E   E A E+ ++                                    
Sbjct: 775 ERFPGVLEYM-ETTREKAAENGYV------------------------------------ 797

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYG 594
           + I  R+                   LP   +    R  G  R+ +N             
Sbjct: 798 ETIFGRRLH-----------------LPEINARNGARRKGAERAAINAPM---------- 830

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLTVHDEIVCETP-DTDEFNASM 646
                   Q  + DI+ + M++  +  Y+       +++ VHDE+V E   D  E     
Sbjct: 831 --------QGTAADIIKKAMLSVNQWVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQ 882

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  LM+   S    +PL  E  E + +
Sbjct: 883 ICELMSQAAS--LDVPLIVEADEGENW 907


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 105/626 (16%), Positives = 194/626 (30%), Gaps = 94/626 (15%)

Query: 5   FIDFETRSPI---DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV 56
           ++D  T + +   D     +  Y     ++  +F  ++         HD       + + 
Sbjct: 350 WLDTLTAADVVAFDTETDSLD-YM-TANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRD 407

Query: 57  -----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSAL 109
                LK  LE+     V  N  F+ ++L      DI +       +L     N +    
Sbjct: 408 WVLAQLKPLLEDPAQNKVGQNLKFDMSILARY---DINMQGIKYDTMLESYVFNSVVGRH 464

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                AL+    K    +E+  +  K  T   +             + G Y   D  +T 
Sbjct: 465 DMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI----------DLDVAGPYAAEDADITL 514

Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            +   L                 E  L  +   I   G  +D  L    +  +     +L
Sbjct: 515 RLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDEL 574

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAI 274
           + +   +      +    ++L+  LF + GL +         +T + VL       P   
Sbjct: 575 ETKAYEIA-EQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPLPK 633

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +                                 + G ++         P    P   R
Sbjct: 634 ILLE-------------------------------YRGLAKLKSTYTDKLPKMVNPSTGR 662

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q +T      +SDP+   I         +R   IA  G K++  D + IE R++
Sbjct: 663 VHTSYHQAVTATGRLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIM 722

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++G++  L+AF+ G+D++  T A    +    VT +QR   K +   L Y   A    
Sbjct: 723 AHLSGDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAF--- 779

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A    +  N     +        + +         E+   HA E  ++ T   R +  
Sbjct: 780 GLAKQLDMGRNEAQDYMN------VYFERYPGVLEYMESTRIHASEQGYVETLFGR-RLY 832

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                SR         +A       G A  II R    V     +++   + L++     
Sbjct: 833 LPDIKSRNGIRRKAAERAAINAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDE 892

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTY 593
           LV+    +    ++   R+L      
Sbjct: 893 LVFEVQESELDAVSADVRRLMELAAE 918


>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
 gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
          Length = 928

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNPLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 928

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNPLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
 gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
          Length = 893

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 121/694 (17%), Positives = 216/694 (31%), Gaps = 169/694 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL-----KEAL 61
           IDL    +     D  ++  +F F DH        H          +P+ L     +  L
Sbjct: 317 IDLETTSLDP--RDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPRDLVLERLRPQL 374

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLS 119
           E+   T +  N  F+  VL       + +       +LA     PS         AL+  
Sbjct: 375 ESPSPTKIGQNIKFDMQVLAT---NGVSLSGIRFDTMLASYVLNPSRQGHGLDALALEHL 431

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +M    E+        T      +N    +        Y   D   T  + ++  PL 
Sbjct: 432 GHRMISYAEV--------TGSGKTQKN--FSQVEIETASRYACEDADATWLLHRKFSPLL 481

Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           ++          E  L  +   + + G  +D+ L   L++        L+  +  L  G 
Sbjct: 482 AENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMATLEGRIFQLA-GT 540

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             +    ++L   LF    L     T+     +T   VLSS  +    A           
Sbjct: 541 TFNLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEEHEIA----------- 589

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                               R  L + G S+         P    PR  R H   +Q +T
Sbjct: 590 --------------------RLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVT 629

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R   IA  G  ++ AD + IE RVLA ++G+    
Sbjct: 630 STGRLSSSDPNLQNIPIRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFC 689

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AFE  ED++  T +  F + P  VT + R   K +   + Y  G+ +    A   G+  
Sbjct: 690 QAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQGSFSL---ARQLGIAR 746

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            T    +                                          A++++H++   
Sbjct: 747 KTAEEFI-----------------------------------------SAYKERHAKAVG 765

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++  +  E+  +     I  +R  +  +              + R+         R+ 
Sbjct: 766 FLDDCIRQAEE--QGFVTTILGRRLPIADITSTNG---------NIRAFA------QRNA 808

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
           +N                    +Q  + DI+   M+              +++ VHDE+V
Sbjct: 809 INYP------------------IQGSAADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELV 850

Query: 634 CETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
            E  + +     +L    M+        +PLK +
Sbjct: 851 FEVREDELLAMELLVEEEMSRAVE--LRIPLKVD 882


>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
 gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 106/643 (16%), Positives = 194/643 (30%), Gaps = 156/643 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  ++ +VL       I +       +LA    N +       
Sbjct: 403 EQLKPILEDDAQAKVGQNLKYDASVLARY---GIEMKGIKHDTMLASYVYNSVGGKHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+         +++  +  K  T   +                 Y   D  VT  + 
Sbjct: 460 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELDEASPYAAEDADVTLRLH 509

Query: 173 KRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQE 221
            RL     ++++L  + Q I              G  +D       +Q +     +L+Q+
Sbjct: 510 NRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLSAQSQEIAQRLDELEQK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+  LF + GL +       T +T + VL       P    + 
Sbjct: 570 AYEIA-EQEFNMNSPKQLQAILFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P   R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPKMINPETGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA  G K++  D + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+Q  L AF+ G+D++  T A        QV+ +QR   K +   L Y   A     +A
Sbjct: 718 SGDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAF---GLA 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+        +                                           + +
Sbjct: 775 KQLGIPRGEAQDYMN-----------------------------------------KYFE 793

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +   +   A     +     I  +R  +P +                R+ + R 
Sbjct: 794 RYPGVMQYMEDTRSAA--ADQGYVETIFGRRLHLPEI--------------KSRNGMRRK 837

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
               R+ +N                     Q  + DI+ + M+          +    ++
Sbjct: 838 A-AERAAINAPM------------------QGTAADIIKKAMLLVDEWIQAEGQGRVKLL 878

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           + VHDE+V E  ++        +  LM S       +PL AE 
Sbjct: 879 MQVHDELVFEVEESSLAEIESKVQQLMESAAD--LDVPLVAEA 919


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 121/687 (17%), Positives = 210/687 (30%), Gaps = 168/687 (24%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
           K G   Y      +  A  +   P +L        + Q L   L + +   V  N  +++
Sbjct: 358 KAGEAAY------LPIAHDYPGAPEQL----SLEFVMQKLGPILADENKAKVGQNLKYDK 407

Query: 78  TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
           +VL    N    ++      +L     N + +       ALK    K    +++  +  K
Sbjct: 408 SVLA---NAGYELNGIKFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEDIAGKGKK 464

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQE 184
             T   +                 Y   D  +T  + + L P               E  
Sbjct: 465 QLTFNQI----------ELEKAAPYAAEDADITLRLHQVLWPKLEADEKLKSVFEDIEMP 514

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   I   G  +D  +  T +Q +     +L++E   +  G   +    ++L+  LF
Sbjct: 515 LVSVISDIERTGVAIDSNMLATHSQRLGERLLELEKEAFEIA-GEPFNLSSPKQLQVLLF 573

Query: 245 LETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            +  L +   T      T + VL       P    +  +R                    
Sbjct: 574 EKLELPVIKKTPKGAPSTAEEVLQELAHDYPLPKVIIEHR-------------------- 613

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                      G S+         P     R  R H    Q +T      +SDP+   I 
Sbjct: 614 -----------GLSKLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDPNLQNIP 662

Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R   IA++G K+V AD + IE R++A ++ ++  L AF  G D++  T A 
Sbjct: 663 IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVHSATAAE 722

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT D R   K +   L Y   A     +A    +  +   H +      + +
Sbjct: 723 VFGVELEEVTSDMRRKAKAVNFGLIYGMSAF---GLARQLDVPRHEAQHYID-----KYF 774

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
           E       +M E   E A E+ ++                                    
Sbjct: 775 ERFPGVLEYM-ETTREKAAENGYV------------------------------------ 797

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYG 594
           + I  R+                   LP   +    R  G  R+ +N             
Sbjct: 798 ETIFGRRLH-----------------LPEINARNGARRKGAERAAINAPM---------- 830

Query: 595 GKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETP-DTDEFNASM 646
                   Q  + DI+ + M++              +++ VHDE+V E   +  E     
Sbjct: 831 --------QGTAADIIKKAMLSVHAWVNQQAPNTVKLLMQVHDELVFEIKTECTEQYTKQ 882

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  LM+        +PL  E  E   +
Sbjct: 883 ICELMSQAAQ--LDVPLIVEADEGDNW 907


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 129/694 (18%), Positives = 228/694 (32%), Gaps = 153/694 (22%)

Query: 7   DFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMP-QVLKEAL 61
           D ET S  P D T  GI             +G     V            +P + +  AL
Sbjct: 381 DTETTSLEPKDTTLVGIG----------CCWGEQPTEVAYIPLNHTEGEQLPQEEVLSAL 430

Query: 62  ----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
               E+ +   V  N+ F+R VL    N  I +   +   +LA     P     L  + E
Sbjct: 431 SVILESENYPKVFQNTKFDRIVL---LNKGIKLAGVVFDTMLASYVLRPELSHKLSDLCE 487

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              L + K    ++L               + +     +      YC  D   T  +  +
Sbjct: 488 RY-LENIKALNYRDL------------EIPKTQTIAHLSLEKVAHYCGMDAYATFMLVPK 534

Query: 175 L-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L           E L   EQ L  +   + + G C+D A  + L+Q ++ +   L+ +  
Sbjct: 535 LIAELKQAPDLYELLLKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAY 594

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G   +    ++L   LF + GL+     +                           
Sbjct: 595 E-AAGESFNLGSPKQLSEILFEKLGLNKRKSRK--------------------------- 626

Query: 284 SRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     +  +E +  D   +   L+    ++         P    P+  R H + +Q 
Sbjct: 627 LKTGYSTDHATLEKLQGDHPIIDYILEHRTLAKLKSTYVDALPALVHPQTGRVHTDFNQA 686

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      +S+P+   I      S  +R   I  +   LV AD + IE R+LA ++ E  
Sbjct: 687 VTTTGRLSSSNPNLQNIPIRTEFSRQIRKAFITQDDWLLVSADYSQIELRILAHLSQEPV 746

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+A++  +D++  T    F+     +T ++R+IGK +   + Y  GA   Q+ A + GL
Sbjct: 747 LLEAYQNYQDVHRVTAQLLFDKEV--ITSEERSIGKTINFGVIYGMGA---QRFARSMGL 801

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       +       ++           E   + AI   F+ T                
Sbjct: 802 SFQEGKDFID------KYHQKYARVFEYLERVKKEAIAKGFVTT---------------- 839

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                               I  R+R      Y +   +     L   R     ++  ++
Sbjct: 840 --------------------IKGRRR------YFEFFDD----KLNHLRGEKPENLDLDK 869

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIV 633
             LN +  QL R            +Q  S DI+   M+            ++L VHDE+V
Sbjct: 870 LNLNYSDAQLLRAAANAP------IQGSSADIIKIAMVQLHEILQHYQARLLLQVHDELV 923

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P  + E     +   M +       +PL  +
Sbjct: 924 FEIPPDEWEDLQVKIKDTMENAVK--LTVPLVVD 955


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 488

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q+  
Sbjct: 489 IHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLEQLEQKAY 548

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 549 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSY 636

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 106/642 (16%), Positives = 191/642 (29%), Gaps = 156/642 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            LK  LE+     V  N  ++ +VL      +I +       +LA    N +        
Sbjct: 406 QLKPILEDDTQAKVGQNLKYDASVLARY---NIEMKGIKHDTMLASYVYNSVGGKHDMDS 462

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+         +++  +  K  T   +                 Y   D  VT  +  
Sbjct: 463 LALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELDQASPYAAEDADVTLRLHN 512

Query: 174 RL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL                 E  L  +   I   G  +D       +Q +     +L+Q+ 
Sbjct: 513 RLMANIEKDEQLKAIYEEIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELEQKA 572

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL +       T +T + VL       P    +  
Sbjct: 573 YEIA-EQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                               G ++         P    P   R H  
Sbjct: 632 YR-------------------------------GLAKLKSTYTDKLPKMINPETGRVHTS 660

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      ++DP+   I         +R   IA  G K++  D + IE R++A ++
Sbjct: 661 YHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 720

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L AF+ G+D++  T A        QV+ +QR   K +   L Y   A     +A 
Sbjct: 721 GDKALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAK 777

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        +                                           + ++
Sbjct: 778 QLGIPRGEAQDYMN-----------------------------------------TYFER 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   +   A  +  +     I  +R  +P +                R+ + R  
Sbjct: 797 YPGVMQYMEDTRSAAAE--QGYVETIFGRRLHLPEI--------------KSRNGMRRKA 840

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVL 626
              R+ +N                     Q  + DI+ + M+               +++
Sbjct: 841 -AERAAINAPM------------------QGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 881

Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
            VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 882 QVHDELVFEVQESALTEIESKVQQLMESAA--ALDVPLVAEA 921


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 488

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q+  
Sbjct: 489 IHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAY 548

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 549 ELA-GKPFNVSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 636

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
          Length = 949

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 118/700 (16%), Positives = 221/700 (31%), Gaps = 176/700 (25%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S  ++          D  +I  +F  +          H+       +P       
Sbjct: 375 DTETDSLNNI----------DARLIGMSFAIEPGKAAYIPLRHEYLDAPEQLPVNDVLAA 424

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+ ++  +  N  F+R +++   N  I ++      +L     N + +       
Sbjct: 425 LKPILEDKNILKIGQNLKFDRGIME---NEGIELNGIHFDTMLESYVLNSVSNRHDMDTL 481

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A K  + K    +E+  +     T   +                 Y   D  +T  + + 
Sbjct: 482 AEKHLNHKTTTFEEIAGKGKGQLTFNQI----------EVEQATLYAAEDADITLLLHQA 531

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +  +G  +D  +    +Q +     ++++E  
Sbjct: 532 LYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLAEIEKETF 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    ++L+  LF +  L +   T      T + VL            +  +
Sbjct: 592 ALA-GQEFNLSSPKQLQEILFDKLQLPVIKKTPKGAPSTNEEVLEELAHSHELPRLILEH 650

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P     +  R H   
Sbjct: 651 R-------------------------------GLAKLKSTYTDKLPLMVNSKTKRVHTSY 679

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      + DP+   I         +R   IA EG K+V AD + IE R++A ++ 
Sbjct: 680 HQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHLSQ 739

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T +  F +   +VT +QR   K +   L Y   A    +    
Sbjct: 740 DKGLLDAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGV 799

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                              E  +A+ +     E +P                        
Sbjct: 800 -------------------ERREAQRYMDLYFERYP------------------------ 816

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                + + + +  +Q  E G                        +    GR L   ++ 
Sbjct: 817 ----GVLDYMERTRKQASEQG-----------------------YVETLEGRRLYLPEIN 849

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627
           +     N   R+ +             +Q  + DI+ + M+           A   +++ 
Sbjct: 850 SK----NAIRRKASEREA-----INAPMQGTAADIIKKAMIAVDNWICNECPADVHMIMQ 900

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  ++   NA  M++ LM S+   A  +PLK E
Sbjct: 901 VHDELVFEVRESYLENANIMIHKLMESSMELA--IPLKVE 938


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R + R            +Q  + DI+ + M+               +++ 
Sbjct: 832 ------EITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 488

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 489 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 548

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 549 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 636

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 488

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 489 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 548

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 549 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 636

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 203/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A +   +Y   D  VT  + +R
Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALQEAAQYAAEDADVTLRLHQR 488

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q+  
Sbjct: 489 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAY 548

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 549 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 636

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/637 (16%), Positives = 200/637 (31%), Gaps = 149/637 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           LK  LE+ ++  V  N  +++ V+       I +       +L   +   +         
Sbjct: 408 LKPVLEDANLLKVGQNLKYDQGVMARY---GIELQGIAFDTMLESYDLDSVAGRHDMDSL 464

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +  + K    +E+  +     T   +          A      Y   D  VT ++  +
Sbjct: 465 AERHLNHKTITFEEIAGKGKSQLTFNQI----------ALEQATPYAAEDADVTLQLHLK 514

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   KE             L  +   +   G  +D  +    +Q + +   +L+++  
Sbjct: 515 LWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDSNILGKHSQELAIRLDELEKKAH 574

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLTPQAIQVFNNRMR 282
               G   +    ++L+  LF +  L +   T             +L+ Q  ++      
Sbjct: 575 E-AAGEPFNLSSPKQLQAILFEKQKLPVVKKTPGGAPSTNEEVLAELSEQGFELPTI--- 630

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                    L+  G ++         P    P   R H    Q 
Sbjct: 631 ------------------------ILEHRGLAKLKSTYTDKLPQMINPATGRVHTSYHQA 666

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      +SDP+   I         +R   IA +G K+V AD + IE R++A ++G++ 
Sbjct: 667 VTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSGDKG 726

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A    +
Sbjct: 727 LLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMSAF---GLARQLNI 783

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                   +        +E       +M+    + A                        
Sbjct: 784 ARGEAQRYMDL-----YFERYPGVLEYMERTRQQAA------------------------ 814

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   Q + +T++        +R  +P ++ +                  R  G  R
Sbjct: 815 -------EQGYVETLD-------GRRLYLPEIHSRN---------------GMRRKGAER 845

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHD 630
           + +N                     Q  + DI+   M++              +++ VHD
Sbjct: 846 AAINAPM------------------QGTAADIIKRAMISVDAWLLQQKEPLVRMIMQVHD 887

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E  ++  E     +  LM  +   A  +PLK +
Sbjct: 888 ELVFEVHESVIEQTVEKVRELMEQSLELA--VPLKVD 922


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 326 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 383

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 384 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 433

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 434 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 493

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 494 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 549

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 550 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 581

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 582 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 641

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 642 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 698

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 699 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 728

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 729 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 748

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 749 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 802

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 803 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 841


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 120/673 (17%), Positives = 212/673 (31%), Gaps = 161/673 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
           A     +     + D PV+      D V+  V+K  LEN  +  +  N  ++  VL+   
Sbjct: 381 AGHAAYLPIGHDYLDAPVQ---LSLDDVI-AVMKPILENEKIGKIGQNLKYDAEVLE--- 433

Query: 85  NLDIPIHRWICTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
           N  I +       +L                   A +  + K    +E+  +  K  T  
Sbjct: 434 NYGIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTFN 493

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------- 190
            +                 Y   D  VT  + + L P   +E +L ++ Q          
Sbjct: 494 QI----------PLEQAANYAAEDADVTLLLHQALFPQLEEEPKLAHVFQNIEMPLVPVL 543

Query: 191 -TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  +G  +D       ++I+     +L+++   L  G   +    ++L+T LF +  L
Sbjct: 544 VRMERKGVLIDAPTLAAQSKIITARLAELEKQAFELA-GEEFNLASPKQLQTILFEKLQL 602

Query: 250 HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
            +   T +    T + VL            +  +R  A                      
Sbjct: 603 PVIKKTPSGAASTNEEVLEELALNHELPKLLLEHRSLA---------------------- 640

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                    +         P    P+  R H    Q +T      + DP+   I      
Sbjct: 641 ---------KLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEE 691

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA +G K++ AD + IE R++A ++ ++  L AF  G+D++  T A  F V 
Sbjct: 692 GRRIRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVP 751

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             QVT DQR   K +   L Y   A     +A   G+                    A+ 
Sbjct: 752 LDQVTSDQRRSAKAINFGLIYGMSAF---GLARQLGIPRGE----------------AQR 792

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +     E +P                             +   +     Q  E G     
Sbjct: 793 YMDLYFERYP----------------------------GVLRYMENTRLQASEQG----- 819

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                              +    GR L   D+ ++    N   R+              
Sbjct: 820 ------------------YVETLEGRRLYLADIKSS----NGMRRKAAEREA-----INA 852

Query: 601 IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTS 653
            +Q  + DI+ + M+         K   D+++ VHDE+V E  +++ E   + +  LM  
Sbjct: 853 PMQGTAADIIKKAMIAVDHWLQTEKPEADMLMQVHDELVFEVKESELEKVQAKVQELMEQ 912

Query: 654 NPSWAKGLPLKAE 666
           +      +PLK E
Sbjct: 913 SMK--LDVPLKVE 923


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 114/700 (16%), Positives = 216/700 (30%), Gaps = 176/700 (25%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S  ++          D  +I  +F  +          HD       +P       
Sbjct: 358 DTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVLTA 407

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  +  +  N  F+R +++   N  I ++      +L     N + S       
Sbjct: 408 LKPILEDKTILKIGQNLKFDRGIME---NEGIELNGIYFDTMLESYVLNSVSSRHDMDTL 464

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A K  + K    +E+  +     T   +                 Y   D  +T  + + 
Sbjct: 465 AEKHLNHKTTTFEEIAGKGKGQLTFNQI----------EVEQATLYAAEDADITLLLHQA 514

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +  +G  +D  +    +Q +     ++++E  
Sbjct: 515 LYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETF 574

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    ++L+  LF +  L +   T      T + VL +          +  +
Sbjct: 575 ALA-GQEFNLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHELPRLILEH 633

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P     +  R H   
Sbjct: 634 R-------------------------------GLAKLKSTYTDKLPLMVNSKTKRVHTSY 662

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      + DP+   I         +R   IA +G K+V AD + IE R++A ++ 
Sbjct: 663 HQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHLSQ 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T +  F +   +VT +QR   K +   L Y   A    +    
Sbjct: 723 DKGLLDAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFGLIYGMSAFGLSQ---Q 779

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                                                  +      
Sbjct: 780 IGVERKEAQ--------------------------------------------RYMDLYF 795

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R   + + + +  +Q  + G                        +    GR L   ++ 
Sbjct: 796 ERYPGVLDYMERTRKQASQQG-----------------------YVETLDGRRLYLPEIN 832

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLT 627
           +     N   R+ +             +Q  + DI+ + M+               +++ 
Sbjct: 833 SK----NAIRRKASEREA-----INAPMQGTAADIIKKAMIAVDNWICHECPDDVHMIMQ 883

Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  ++  E   +M++ LM S+   A  +PLK E
Sbjct: 884 VHDELVFEVRESYLEKANAMIHKLMESSMELA--IPLKVE 921


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 112/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 361 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 418

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 419 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 468

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 469 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 528

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 529 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 584

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 585 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 616

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 617 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 676

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 677 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 733

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 734 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 763

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 764 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 783

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 784 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 837

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL A+ 
Sbjct: 838 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVADA 876


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 405 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 462

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 463 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 512

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q+  
Sbjct: 513 IHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAY 572

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 573 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 628

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 629 ----------------------------IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSY 660

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 661 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 720

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 721 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 777

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 778 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 807

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 808 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 827

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 828 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 881

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 882 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 920


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 108/643 (16%), Positives = 195/643 (30%), Gaps = 156/643 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  ++ +VL       I +       +LA    N +       
Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY---GIEMKGIKHDTMLASYVYNSVGGKHDMD 461

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+         +++  +  K  T   +                 Y   D  VT  + 
Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELEQASPYAAEDADVTLRLH 511

Query: 173 KRL-------EPL----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            RL       E L       E  L  +   I   G  +D       +Q + +   +L+Q+
Sbjct: 512 NRLLANIEQDEKLKTIYEEVEVPLVPVLSRIERTGVLIDDMKLAAQSQEIALRLDELEQQ 571

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+  LF + GL +       T +T + VL       P    + 
Sbjct: 572 AFEIA-EQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLIL 630

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P   R H 
Sbjct: 631 EYR-------------------------------GLAKLKSTYTDKLPKMINPETGRVHT 659

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA  G K++  D + IE R++A +
Sbjct: 660 SYHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHL 719

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L AF+ G+D++  T A    V   QV+ +QR   K +   L Y   A     +A
Sbjct: 720 SGDKALLDAFQQGKDIHAATAAEIIGVDIEQVSAEQRRRAKAVNFGLIYGMSAF---GLA 776

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+        +                                           + +
Sbjct: 777 KQLGIPRGEAQQYMD-----------------------------------------TYFE 795

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +   +   A  +  +     I  +R  +P +                R+ + R 
Sbjct: 796 RYPGVMQYMEDTRSAAAE--QGYVETIFGRRLHLPEI--------------KSRNGMRRK 839

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
               R+ +N                     Q  + DI+ + M+          +    ++
Sbjct: 840 A-AERAAINAPM------------------QGTAADIIKKAMLLVDEWIESQGQGRVKLL 880

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           + VHDE+V E  ++        +  LM S       +PL AE 
Sbjct: 881 MQVHDELVFEVQESALAEIESKVQELMESAAQ--LDVPLIAEA 921


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 110/693 (15%), Positives = 211/693 (30%), Gaps = 167/693 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVEL---------WDCVHDPVMPQVL---KEALE 62
           D    G+     ++  + FA    +  VE           D      + +VL   K  LE
Sbjct: 353 DTETDGLDTLTANLVGMSFAIAAGESEVEAAYLPLAHDYLDAPQQLDLHEVLTALKPLLE 412

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120
           + ++  +  N  F+R VL      D+ +   +   +L     N +         A +  S
Sbjct: 413 DANLPKIGQNLKFDRGVLARY---DVVLEGIVFDTMLESYVLNSVAGRHDMDSLAERHLS 469

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K    +++  +  K  T   +                +Y   D  VT  + + + P  +
Sbjct: 470 YKTTTFEDIAGKGKKQLTFNQI----------PLEEAAKYAAEDADVTLRLHQAMYPQLA 519

Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  L  +   +   G  +D       ++ + V   +L++   +L    
Sbjct: 520 SAEVLKKVFQKIEMPLVPVLSRMERTGVLIDARTLAEHSREITVRLDELEKSAYALAD-E 578

Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF +  L +     +   +T + VL    +                 
Sbjct: 579 EFNLASPKQLQVILFEKMKLPVLKKTPNGAPSTNEEVLEELAENHELP------------ 626

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L+  G ++         P    P  +R H    Q +T 
Sbjct: 627 -------------------RVILEHRGLAKLKSTYTDKLPQMVNPLTNRVHTSYHQAVTA 667

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + DP+   I         +R   IA  G +++ AD + IE R++A ++ ++  L 
Sbjct: 668 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPTGYRIMAADYSQIELRIMAHLSQDKGLLA 727

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F V    VT +QR   K +   L Y   A     ++   G+   
Sbjct: 728 AFAQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMSAF---GLSRQLGIPRG 784

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                          +       R   +
Sbjct: 785 EAQ--------------------------------------------RYMDLYFERYPGV 800

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            N + +  +Q  E+G                        +    GR L   ++ +     
Sbjct: 801 LNYMERTRQQAAEHG-----------------------FVETLEGRRLYLPEIKS----R 833

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           N   R+ +             +Q  + DI+   M+         K    +++ VHDE+V 
Sbjct: 834 NAMRRKASEREA-----INAPMQGTAADIIKLAMIAVDDWIVSEKPNVRMIMQVHDELVF 888

Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E  +++       +  LM  +      +PLK +
Sbjct: 889 EVHESELAMAEQKIRALMEQSML--LDVPLKVD 919


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q+  
Sbjct: 517 IHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAY 576

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSY 664

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924


>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 927

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 96/540 (17%), Positives = 172/540 (31%), Gaps = 79/540 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  ++ +VL       I +       +LA    N +       
Sbjct: 401 EQLKPILEDGSRAKVGQNLKYDASVLARY---GIDMRGIKFDTMLASYVYNSVAGKHDMD 457

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+         +++  +  K  T   +                 Y   D  VT  + 
Sbjct: 458 SLALRFLQHSCISFEQVAGKGKKQLTFNQI----------DLEQAAPYAAEDADVTFRLH 507

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +RL+                E  L  +   I   G  +D       +Q + +    L+Q+
Sbjct: 508 QRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGVLIDDMKLSAQSQEIALRLDALEQQ 567

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+  LF + GL +       T +T + VL       P   ++ 
Sbjct: 568 AFDIA-GQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPEKIL 626

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P   R H 
Sbjct: 627 EYR-------------------------------GLAKLKSTYTDKLPKMINPTTGRVHT 655

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A +
Sbjct: 656 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAIDYSQIELRIMAHL 715

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L+AF+ G+D++  T A    V  +QVT +QR   K +   L Y   A     +A
Sbjct: 716 SGDRALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNFGLIYGMSAF---GLA 772

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+        + T    E +     +    +    E    +   G           +
Sbjct: 773 KQLGIPRGEAQQYMDT--YFERYPGVMQYMEDTRSIAAEQGYVETIFGRRL-----HLPE 825

Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             SR         +A       G A  II +    V      + +  + L++     LV+
Sbjct: 826 IQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDDWIQTEGQGRVKLLMQVHDELVF 885


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 365 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 422

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +          A     +Y   D  VT  + +R
Sbjct: 423 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 472

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q   
Sbjct: 473 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 532

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 533 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 588

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       +++ G ++         P    P   R H   
Sbjct: 589 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 620

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 621 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 680

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 681 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 737

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P               V +      
Sbjct: 738 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 767

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR ++L               + I  R+                   LP           
Sbjct: 768 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 787

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
                   T+R   R            +Q  + DI+ + M+               +++ 
Sbjct: 788 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 841

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 842 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 880


>gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
          Length = 928

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 129/699 (18%), Positives = 210/699 (30%), Gaps = 174/699 (24%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL-------- 57
           D ET S           Y  D  ++  A              H  P  P  L        
Sbjct: 338 DLETSSLN---------YM-DAEIVGVALAVGAGEAAYVPLAHEGPDTPTQLDRDRVLAA 387

Query: 58  -KEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110
            K  LE+ D   V  N  ++ +VL            D  +  ++     +R +    ALK
Sbjct: 388 LKPLLEDPDRAKVGQNLKYDMSVLARYDIHLEGVAYDTMLESYVLDSTASRHDMDSLALK 447

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +G A         +G + I                 P  + A      Y   D  +T  
Sbjct: 448 YLGRATVKYEDVCGKGAKQI-----------------PFAQVAVETATRYAGEDADITLR 490

Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P    E             L  +   +   G  VD AL    +  +      L+
Sbjct: 491 LHQTLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTELAEGMAALE 550

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           Q       G   +    ++++  LF   GL +   T         S  +           
Sbjct: 551 QRAHEEAEG-PFNLSSPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEE---------- 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
              A+R   L               R  L +   ++         P    P+  R H   
Sbjct: 600 --LAARGYELP--------------RLILAYRSLAKLKTTYTDKLPRLIHPKTGRVHTSY 643

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       +SDP+   I         +R   +A  G KL+ AD + +E R++A ++G
Sbjct: 644 HQAVAATGRLSSSDPNLQNIPVRTAEGRRIRKAFVAEPGCKLLAADYSQVELRIMAHLSG 703

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++   +AF  G D++  T A  F +AP +V  +QR   K +   L Y   A     +A  
Sbjct: 704 DEGLRQAFAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINFGLIYGMSAY---GLARQ 760

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                       +     E +P               VK+   +  
Sbjct: 761 LGIERGEAQA----------------YVDRYFERYP--------------GVKEYMDRTR 790

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +                        AR+R  V  ++              GR L   ++ 
Sbjct: 791 AE-----------------------ARERGYVETLF--------------GRRLYLPEI- 812

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
                 N   RQ  REY          +Q  + D++   M+          +   +V+ V
Sbjct: 813 ------NARNRQ-RREYAER-TAINAPMQGTAADLIKRAMVAVDAWLTEAHSKARMVMQV 864

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P  D    A  L   M +    A  +PL+ +
Sbjct: 865 HDELVLEVPAADVPAVAEGLRERMQAAGELA--VPLEVD 901


>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
 gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIESGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALDEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
 gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI39]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
 gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLQYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
 gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 116/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+  LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQNILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
 gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
 gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
           exonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLGYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D E  A  ++ LM 
Sbjct: 887 EVHKDDLEAVAKKIHQLME 905


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 116/684 (16%), Positives = 204/684 (29%), Gaps = 164/684 (23%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVM-PQVLKEA 60
           D E     DL    +  Y E   ++      +          HD       +  Q + EA
Sbjct: 342 DCEAFC-FDLETTSL-SYME-ADIVGVGLALEPGEAAYIPLAHDYLDAPEQLDRQAVLEA 398

Query: 61  LE----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA 115
           L     +     +  N  ++ +VL    +          T++ +      +        A
Sbjct: 399 LAPLWADAGKAKIGQNLKYDISVLARHGHEVAGP--LHDTMLESYVLDSTATRHDMDSLA 456

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           LK   +K    +++  +  K  T   +          A      Y   DV +T  + + L
Sbjct: 457 LKYLGEKTVSFEDIAGKGAKQLTFNQI----------ALEQAAPYACEDVDITLRLHREL 506

Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P           L + E+ L  +   +   G  +D    H  ++ +     +L+Q    
Sbjct: 507 RPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPERLHEQSRELGERIRELEQRAHE 566

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L   LF E  + +   T      T + VL       P    +  +R
Sbjct: 567 LA-GREFNLGSPKQLGEILFEEQKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVIMEHR 625

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P    P   R H    
Sbjct: 626 -------------------------------GFSKLRSTYTDKLPKLVDPTTGRLHTSYH 654

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +SDP+   I         +R   +A  G +LV AD + IE R++A ++G+
Sbjct: 655 QAVTATGRLSSSDPNLQNIPIRTEQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLSGD 714

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G D++  T A  F VA  +V+ +QR   K +   L Y   A     +    
Sbjct: 715 KGLLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSA---WGLGRQL 771

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +  N     +        + D         E     A ED ++ T              
Sbjct: 772 HIERNQAQIYID------RYFDRYPGVARYMERIRAQAAEDGYVETVFG----------- 814

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                     +R  +P ++ +                  R  G 
Sbjct: 815 --------------------------RRLHLPEIHSQNRN---------------RRQGA 833

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVH 629
            R+ +N                     Q  + DI+   M++      D      +V+ VH
Sbjct: 834 ERTAINAPM------------------QGTAADIIKRAMIDVDGWLADGDIDAMMVMQVH 875

Query: 630 DEIVCETPDTD-EFNASMLYHLMT 652
           DE+V E  +++ +     +   M 
Sbjct: 876 DELVFEVAESEVDAFMDQVKTRME 899


>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
 gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
 gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
 gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
 gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
 gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   KL+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAKLEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
 gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
          Length = 917

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 129/708 (18%), Positives = 216/708 (30%), Gaps = 178/708 (25%)

Query: 7   DFET--RSPIDLTKCGICK-YAEDVCVILFAFGFDDHP-----VELWDCVHD-----PVM 53
           D ET     +D+    +   YA+     L        P     V L     D       +
Sbjct: 323 DLETCQAFALDVETTALHPMYAD-----LVGIALATAPDRSYYVPLGHTTGDTQLDIEQV 377

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            Q L   L + +    AH+  ++  VL+       P        ++A      +A+    
Sbjct: 378 LQRLAPFLRHPEKQRYAHHGKYDALVLERA---GFPRPHIDFDTMIAAYLLGENAVGLKE 434

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +MEE  ELI R  K               R       +Y   DV  T  + +
Sbjct: 435 LAFTKLGWEMEEITELIGRGKKQ----------LTMDRAEIARVTQYACADVEATYRLVE 484

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L P              E  L  +   +   G  +DV     L+ ++D +   L++ + 
Sbjct: 485 VLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIY 544

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280
            L  G   +    ++L T LF E GL     T+T     Q VL + +   P    +   R
Sbjct: 545 ELA-GHPFNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYR 603

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                             +         P Q  P+  R H    
Sbjct: 604 QLL-------------------------------KLKSTYVDALPRQVHPQTGRVHTIFH 632

Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIAS---------EGKKLVVADLAGIEA 386
           Q +       +SDP+   I +       VR   IA          E   L+  D + IE 
Sbjct: 633 QTVAATGRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIEL 692

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A  + +   L+AF  G+D++  T +  F V    VT + R I KV+   + Y   A 
Sbjct: 693 RLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAY 752

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +A  TG++                                              R 
Sbjct: 753 ---GLARDTGMSRQDAQ-----------------------------------------RF 768

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            +A+ Q+   V+    E  +   + +   + +  R+R                  LP   
Sbjct: 769 IEAYFQRFPGVARYLEETRRRAAE-LGYVETLFGRRRY-----------------LP--- 807

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---- 622
                      +  N   RQ               +Q  + DI+   M+   +A      
Sbjct: 808 ---------EITSSNPARRQAAERMA-----VNMPLQGTAADIMKLAMIAVHRALAERGL 853

Query: 623 --DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
              ++L VHDE+V E P+++      ++   M+        +PL+ + 
Sbjct: 854 RSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVE--LSVPLEVDA 899


>gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
          Length = 928

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D E  A  ++ LM 
Sbjct: 887 EVHKDDLEAVAKKIHQLME 905


>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
 gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
          Length = 928

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
 gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
          Length = 928

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
          Length = 928

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D E  A  ++ LM 
Sbjct: 887 EVHKDDLEAVAKKIHQLME 905


>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
 gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
          Length = 928

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272]
          Length = 928

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERTAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
          Length = 928

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
 gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
 gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
 gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
 gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
 gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
          Length = 928

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
 gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
 gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
 gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
 gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
 gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
 gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
 gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
 gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
 gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
 gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9]
 gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B]
 gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
 gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736]
 gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
 gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
 gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
 gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
 gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
 gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K12 substr.
           W3110]
 gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
 gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
 gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
 gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
 gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
 gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
 gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
 gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli 55989]
 gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI1]
 gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
 gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Escherichia coli BL21(DE3)]
 gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
 gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
 gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
 gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
 gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
 gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
 gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
 gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
 gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
 gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
 gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
 gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
 gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
          Length = 928

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
          Length = 928

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 103/563 (18%), Positives = 186/563 (33%), Gaps = 79/563 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+  +  V  N  ++ +VL      DI +       +LA    N +       
Sbjct: 406 EQLKPLLEDDAIAKVGQNLKYDASVLARY---DIELKGIKFDTMLASYVYNSVGGKHDMD 462

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+         +++  +     T   +                 Y   D  VT  + 
Sbjct: 463 SLALRFLQHSCISFEQIAGKGKAQLTFNQI----------DLEQASPYAAEDADVTFRLH 512

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +RL     K           E  L  +   I   G  +D  L    +Q +     +L+Q+
Sbjct: 513 QRLNAELEKNEALNRIYQDIEVPLVPVLSRIERTGVLIDDMLLGAQSQEIAARLDELEQK 572

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T  F + GL +   T +    T + VL       P    + 
Sbjct: 573 AFEIA-GQEFNLSSPKQLQTIFFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLIL 631

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P   R H 
Sbjct: 632 E-------------------------------YRGLAKLKSTYTDKLPKMINPETGRVHT 660

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA  G K++  D + IE R++A +
Sbjct: 661 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHL 720

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L AF+ G+D++  T A    V   QVT +QR   K +   L Y   A     ++
Sbjct: 721 SGDKALLDAFKNGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINFGLIYGMSAF---GLS 777

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+        + T      +E      ++M E+    A E  ++ T   R +    +
Sbjct: 778 KQLGIPRGEAQQYMDT-----YFERYPGVMQYM-EDTRSLAAEKGYVETIFGR-RLHLPE 830

Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             SR         +A       G A  II +    V      + +  + L++     LV+
Sbjct: 831 IKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWVQAEGEGKVKLLMQVHDELVF 890

Query: 571 RDVGNNRSYLNTTTRQLTREYTY 593
               ++ S + +  ++L      
Sbjct: 891 EVESSSLSEIESKIQKLMESAAE 913


>gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
          Length = 928

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
 gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
 gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
 gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli S88]
 gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
 gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
 gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
 gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
          Length = 928

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
 gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
 gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
          Length = 928

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74]
          Length = 605

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 116/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 81

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 139 AERWLKHKTITFEEIAGKGKNPLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G ++         P    P+  R H   
Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 564 EVHKDDVDAVAKQIHQLME 582


>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
 gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli ED1a]
          Length = 928

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886]
 gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886]
          Length = 931

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 114/675 (16%), Positives = 195/675 (28%), Gaps = 168/675 (24%)

Query: 33  FAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKA 82
            +F   +         HD    P+ L            LE+     V  N  ++ +VL  
Sbjct: 373 ISFAVAEGEAAYLPLAHDYLDAPKQLDRDWVLAEMKLWLEDAGALKVGQNLKYDASVLAR 432

Query: 83  CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
               DI +       +L     N +         AL+    +    +E+  +  K  T  
Sbjct: 433 Y---DIAMRGIAYDTMLESYVFNSVAGKHDMDSLALRYLQHQCISFEEIAGKGKKQLTFN 489

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLD 189
            +                 Y   D  VT  +   L       E L       E  L  + 
Sbjct: 490 QI----------ELDQAAPYAAEDADVTLRLHNALMAQLNNDEKLKVIFEQYEMPLVPVL 539

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  +   +    +Q + V    L++E+  L  G   +    ++L+  LF + GL
Sbjct: 540 SRMERHGVLISAEMLAKQSQEIAVRLDTLEKEVFELA-GEEFNLSSPKQLQAILFEKMGL 598

Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
            +       T +T + VL       P   ++   R                         
Sbjct: 599 PVVKKTPSGTPSTNEEVLQELALDYPLPKRILEYR------------------------- 633

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                 G ++         P    P   R H    Q +T      ++DP+   I      
Sbjct: 634 ------GLAKLKSTYTDKLPKMVKPATGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 687

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA  GK ++  D + IE R++A ++G++  + AF  G+D++  T A    + 
Sbjct: 688 GRRIRQAFIAPAGKTILAVDYSQIELRIMAHLSGDEALIDAFRHGKDIHAATAAEVMGID 747

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            + VT + R   K +   L Y   A     +A   G+        +        + +   
Sbjct: 748 ISDVTPEMRRRAKAINFGLIYGMSAF---GLAKQLGIPRGEAQQYMD------RYFERYP 798

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
             R   EN    A                                Q + +TI   +    
Sbjct: 799 GVRQYMENTRLQA------------------------------AEQGYVETIFGRR---- 824

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                              L LP  +S    R  G  R+ +N                  
Sbjct: 825 -------------------LHLPEIKSSNAMRRKGAERAAINAPM--------------- 850

Query: 600 NIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLM 651
              Q  + DI+   M+               +++ VHDE+V E            +  LM
Sbjct: 851 ---QGTAADIIKRAMILVDAWIQQQPEGRVALIMQVHDELVLEVDTEHLAEVEQQVCKLM 907

Query: 652 TSNPSWAKGLPLKAE 666
            S       +PL A+
Sbjct: 908 ESAAL--LDVPLVAD 920


>gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
 gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
          Length = 928

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
 gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
          Length = 928

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933]
 gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
 gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
 gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
 gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
 gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
 gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
 gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
 gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
 gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88]
          Length = 928

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D +  A  ++ LM 
Sbjct: 887 EVHRDDVDAVAKQIHQLME 905


>gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
          Length = 928

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D +  A  ++ LM 
Sbjct: 887 EVHRDDVDAVAKQIHQLME 905


>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 933

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 185/558 (33%), Gaps = 76/558 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115
           LK  LEN ++  +  N  F+ T+        I +      T++L+ +            A
Sbjct: 412 LKPILENPNIGKIGQNLKFDMTIFAR---NGIDLQGIEFDTMLLSYTLDSTGRHNMDDLA 468

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---- 171
            +    +    +++  +     T   +               GEY   D  VT ++    
Sbjct: 469 KRYLGHQTISFEDIAGKGKNQLTFNQI----------PLEQAGEYAAEDADVTMKLQQVL 518

Query: 172 FKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +++L+P         S E  L  +   +   G  +D       +  +    T L+ +  +
Sbjct: 519 WQKLQPQPGLVELYQSIELPLLGVLSRMERYGVLIDSDALFLQSNEITERLTALEMQAHT 578

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF + GL +   T        + VL            +  +R
Sbjct: 579 LA-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGVPSTNEEVLEELAYSHELPKVLVEHR 637

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P    P+  R H    
Sbjct: 638 -------------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYH 666

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +SDP+   I         +R   IA +G K++ AD + IE R++A ++ +
Sbjct: 667 QAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 726

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           Q  + AF  G+D++ +T A  F +   QVT +QR   K +   L Y   +     ++   
Sbjct: 727 QGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSF---GLSRQL 783

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +      + + + + F   ++E        +   G           + +S
Sbjct: 784 GISRADAQRYMD--LYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRL-----YLPEINS 836

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             +       +        G A    KR  + L  + +D  ++ +++     LV+     
Sbjct: 837 SNAMRRKGAERVAINAPMQGTAADTIKRAMIKLDGITRDDPDIHMIMQVHDELVFEVRSE 896

Query: 576 NRSYLNTTTRQLTREYTY 593
             ++ +   +Q       
Sbjct: 897 KIAFFSDLIKQHMEAAAE 914


>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
 gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
 gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
 gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11]
          Length = 928

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 116/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +               G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQIT----------LEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
          Length = 916

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 343 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 392

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 393 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 449

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 450 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 499

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 500 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 559

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 560 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 618

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 619 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 647

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 648 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 707

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 708 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 764

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 765 LNIPRK----------------EAQKYMDLYFERYP------------------------ 784

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 785 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 817

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 818 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 874

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D +  A  ++ LM 
Sbjct: 875 EVHRDDVDAVAKQIHQLME 893


>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
 gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
          Length = 928

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LEN     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLENEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
          Length = 928

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLTKC----------GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++            G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIELGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
          Length = 928

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDANVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 113/614 (18%), Positives = 195/614 (31%), Gaps = 89/614 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQV-----LKEALENT 64
           DL    +  Y E   ++  +F    H          D    P +P+      LK  LE+ 
Sbjct: 330 DLETNNLD-YIE-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLARLKPLLEDP 387

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
               V  N  F+  VL    N  I +       +L         L +      + S  ++
Sbjct: 388 RHGKVGQNLKFDCNVLA---NYGIELQGIRHDSMLESYV-----LDSTATRHNMDSLALK 439

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
               L       E       +  P ++        Y   D  ++ ++     P   +E+ 
Sbjct: 440 Y---LQRTTITYEMVAGKGAKQLPFNQVTIEKAAPYAAEDADISLQLHHCFWPRLQQEEG 496

Query: 185 LWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L  L Q            +   G  V+       +  +     +L+QE   L  G   + 
Sbjct: 497 LRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSDELAARLKRLEQEAFELA-GESFNL 555

Query: 234 RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              ++++  L+ +  L +   T T    T + VL       P    +   R         
Sbjct: 556 ASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQLLLEYR--------- 606

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+         P Q      R H    Q +T     
Sbjct: 607 ----------------------TLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAVTATGRL 644

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +SDP+   I         +R   IA  G +LV AD + IE R++A ++ ++  L AFE 
Sbjct: 645 SSSDPNLQNIPIRSTEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEA 704

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            ED++  T    F      VT +QR   K +   L Y   A     +    G+N     H
Sbjct: 705 EEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSA---HGLGRQLGINRTAAQH 761

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +      E +       +   EN  + A +  ++ T   R +    + HSR ++  N+ 
Sbjct: 762 YI------ERYFQRYPGVKAYMENICQQARQKGYVETLFGR-RLYLPEIHSRQTQRRNQA 814

Query: 525 HQAFEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
            +        G A    KR  +    ++++ K N  +++     LV+         L  T
Sbjct: 815 ERTAINAPMQGSAADIIKRAMIHADRWLQEQKANARMIMQVHDELVFE---VAEDKLEAT 871

Query: 584 TRQLTREYTYGGKL 597
            R +        +L
Sbjct: 872 IRAIRENMAAAAQL 885


>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
 gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
          Length = 928

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                    A+ +     E +P                        
Sbjct: 777 LNIPRKE----------------AQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGPAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 929

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 110/643 (17%), Positives = 201/643 (31%), Gaps = 161/643 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110
           LK  LE++++  +  N  F+R VL            D  +  ++   V            
Sbjct: 404 LKPLLEDSNLLKIGQNIKFDRGVLARYGIELQGIAYDTMLESYVLNSVAGM-----GRHD 458

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A +  + K    +E+  +     T   +          A      Y   D  VT  
Sbjct: 459 MDSLAERHLNHKTTTFEEIAGKGKNQLTFNQV----------AVEQAAMYAAEDADVTLL 508

Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + + P   K           E  L  +   +   G  +D  +    ++ +     +L+
Sbjct: 509 LHQAMWPQLEKAPTLEKVFLNTEMPLVMVLSRMERTGVLIDANILAEHSKEITARLDELE 568

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQ 275
           +E   L  G V +    ++L+T LF +  L +     +   +T + VL            
Sbjct: 569 KEAHELA-GEVFNLASPKQLQTILFEKLQLPVVKKTPNGAPSTNEEVLEELADTHALPKV 627

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R                               G ++         P    P   R 
Sbjct: 628 ILEHR-------------------------------GLAKLKSTYTDKLPQMVHPLTKRV 656

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H    Q +T      + DP+   I         +R   +A EG +++ AD + IE R++A
Sbjct: 657 HTSYHQAVTATGRLSSRDPNLQNIPVRNKEGRRIRQAFVAPEGYRIMAADYSQIELRIMA 716

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +Q  LKAF  G+D++  T A  F +   QVT +QR   K +   L Y   A     
Sbjct: 717 HLSQDQGLLKAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMSAF---G 773

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           ++   G+                    A+ +     E +P                    
Sbjct: 774 LSRQLGIPRGE----------------AQRYMDLYFERYP-------------------- 797

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                    +   + +  +Q  E G       RR             L L     R+ + 
Sbjct: 798 --------GVLAYMERTRKQAEEQGYVETLDGRR-------------LYLSDIKSRNAMR 836

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624
           R     R  +N                     Q  + DI+ + M+         +    +
Sbjct: 837 RKA-AEREAINAPM------------------QGTAADIIKKAMIAVDDWIVSEEPKVRM 877

Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           ++ VHDE+V E  +++ E+    +  LM  +      +PLK +
Sbjct: 878 IMQVHDELVFEVHESELEYAEQKIRELMEKSMV--LDVPLKVD 918


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 113/700 (16%), Positives = 215/700 (30%), Gaps = 176/700 (25%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S  ++          D  +I  +F  +          HD       +P       
Sbjct: 375 DTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVLTA 424

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  +  +  N  F+R +++   N  I ++      +L     N + S       
Sbjct: 425 LKPILEDKTILKIGQNLKFDRGIME---NEGIELNGIYFDTMLESYVLNSVSSRHDMDTL 481

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A K  + K    +E+  +     T   +                 Y   D  +T  + + 
Sbjct: 482 AEKHLNHKTTTFEEIAGKGKGQLTFNQI----------EVEQATLYAAEDADITLLLHQA 531

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +  +G  +D  +    +Q +     ++++E  
Sbjct: 532 LYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETF 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    ++L+  LF +  L +   T      T + VL +          +  +
Sbjct: 592 ALA-GQEFNLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHELPRLILEH 650

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P     +  R H   
Sbjct: 651 R-------------------------------GLAKLKSTYTDKLPLMVNSKTKRVHTSY 679

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      + DP+   I         +R   I  +G K+V AD + IE R++A ++ 
Sbjct: 680 HQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHLSQ 739

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T +  F +   +VT +QR   K +   L Y   A    +    
Sbjct: 740 DKGLLDAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFGLIYGMSAFGLSQ---Q 796

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                                                  +      
Sbjct: 797 IGVERKEAQ--------------------------------------------RYMDLYF 812

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R   + + + +  +Q  + G                        +    GR L   ++ 
Sbjct: 813 ERYPGVLDYMERTRKQASQQG-----------------------YVETLDGRRLYLPEIN 849

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLT 627
           +     N   R+ +             +Q  + DI+ + M+               +++ 
Sbjct: 850 SK----NAIRRKASEREA-----INAPMQGTAADIIKKAMIAVDNWICHECPDDVHMIMQ 900

Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  ++  E   +M++ LM S+   A  +PLK E
Sbjct: 901 VHDELVFEVRESYLEKANAMIHKLMESSMELA--IPLKVE 938


>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
 gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
          Length = 928

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 116/679 (17%), Positives = 214/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      +  A  + D P ++        + ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------VPVAHDYLDAPEQI----SRERVLEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N DI +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA +   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPQDHVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                    A+ +     E +P                        
Sbjct: 777 LNIPRKE----------------AQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++ +       +        G   + I +A+   I  +  + A K    +++ VHDE+V 
Sbjct: 830 SSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEKPRVRMIMQVHDELVF 886

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D +  A  ++ LM 
Sbjct: 887 EVHKDDLDVVAKKIHQLME 905


>gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80]
 gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80]
          Length = 525

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 113/640 (17%), Positives = 201/640 (31%), Gaps = 154/640 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEA 115
           LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         A
Sbjct: 1   LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLA 58

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+         +++  +     T   +          A     +Y   D  VT  + +R+
Sbjct: 59  LRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQRI 108

Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            PL  +           E  L  +   I   G  +D  L    +Q + +   +L+Q    
Sbjct: 109 HPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYE 168

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+T LF +  L +       T +T + VL       P    +    
Sbjct: 169 LA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL---- 223

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                      +++ G ++         P    P   R H    
Sbjct: 224 ---------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYH 256

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G+
Sbjct: 257 QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGD 316

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A   
Sbjct: 317 QALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQL 373

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+                    A+ +     E +P               V +      S
Sbjct: 374 GIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTRS 403

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R ++L               + I  R+                   LP            
Sbjct: 404 RAAQL------------GYVETIFGRRLH-----------------LP------------ 422

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTV 628
                  T+R   R            +Q  + DI+ + M+               +++ V
Sbjct: 423 -----EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQV 477

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           HDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 478 HDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 515


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 120/679 (17%), Positives = 212/679 (31%), Gaps = 165/679 (24%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFE 76
              ++  +F             HD P  PQ L         K   E+     + H+  ++
Sbjct: 335 QAELVGLSFAIGGEKPVYIPLAHDYPDAPQQLNRQWVLQQLKPLFEDPKQIKIGHHLKYD 394

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFC 134
             +L       I +       +L       ++        ALK    K    +E+  +  
Sbjct: 395 MNILAHY---GIQLRGIDFDTMLESYLLDSASNQHSLDSAALKHLDHKTIRFEEIAGKGA 451

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQ 183
           K +T   +            +  G Y   D  +   + + L+P            +  E 
Sbjct: 452 KQKTFNQIN----------LQDAGPYAAEDAAIALRLHETLKPQLDNVVGLSTVYTEIEM 501

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  +D  L    ++ +      L+Q+   L  G   +    ++L+T L
Sbjct: 502 PLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLTLEQQAFQLA-GKPFNLGSPKQLQTIL 560

Query: 244 FLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           F + GL +         +T + VL +     P    +  +R                   
Sbjct: 561 FDDHGLPILEKTPKGQASTSENVLQALALTFPLPKIILKHRRL----------------- 603

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                         S+         P Q  P+  R H    Q         +SDP+   I
Sbjct: 604 --------------SKLKSTYTDKLPEQINPKTGRVHTSYHQAAVVTGRLSSSDPNLQNI 649

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   IA  G  ++ AD + IE R++A  + ++  LKAF  G D++  T A
Sbjct: 650 PARTHEGRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGLLKAFAQGLDIHQATAA 709

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
              N+   +VT +QR   K +   L Y   A     +A   G++                
Sbjct: 710 EVLNIPLERVTHEQRRSAKAINFGLMYGMSAF---GLARQLGISR--------------- 751

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
            EDA+N+     + +P               VK+   +   R                  
Sbjct: 752 -EDAKNYIERYFDRYP--------------GVKRYMERIRQR------------------ 778

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                A ++R V  ++              GR L       N +++N+      R     
Sbjct: 779 -----AHEQRYVTTLF--------------GRRL-------NLAFINSNDSLQRRASERA 812

Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  +Q  + DI+ + M+         K    +++ VHDE+V E  + D   A  L 
Sbjct: 813 A--INAPLQGSAADIIKKAMIRIDAELIKKKLDAHMIMQVHDELVFEIAEHDLQRAKRLI 870

Query: 649 H-LMTSNPSWAKGLPLKAE 666
             LM    +    +PL  +
Sbjct: 871 ENLMVHTTT--LSVPLVVD 887


>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
          Length = 928

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 213/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F++    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
 gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
          Length = 928

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYATEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
 gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
          Length = 931

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/597 (16%), Positives = 191/597 (31%), Gaps = 97/597 (16%)

Query: 16  LTKCGICKY------AEDVCVILFA--FGFDDHPVELWDCVHD-----PVMPQV-----L 57
           +   G+  +       + +   L    F  +          HD       + +      L
Sbjct: 348 IKTKGVFAFDTETDSLDTISTTLVGVSFAINAGEAAYLPLGHDYLDAPEQLDRDKVLALL 407

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEA 115
           K  LE+  V  +  N  F++ V+       I +       +L     + +         +
Sbjct: 408 KPVLEDASVLKIGQNLKFDKGVMARY---GITLRGIAFDTMLESYVLDSVAGRHDMDSLS 464

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +  + K    +E+  +     T   +                 Y   D  VT  + + L
Sbjct: 465 ERYLNHKTITFEEIAGKGKNQLTFNQI----------PLEQAAVYAAEDADVTLRLHQVL 514

Query: 176 EPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
               +KE  L+ + Q            +  +G  +D A+    ++ +     +L+     
Sbjct: 515 SEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDTAILAEHSKELTQRLAELEVRAHE 574

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           L  G V +    ++L+  L+ +  L +   T      T + VL+      P    +   R
Sbjct: 575 LA-GEVFNLSSTKQLQAILYEKLQLPVTKKTPKGAPSTNEEVLAELALDYPLPKVILEYR 633

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G ++         P    P   R H    
Sbjct: 634 -------------------------------GLAKLKSTYTDKLPMMINPLTKRVHTSYH 662

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++ +
Sbjct: 663 QAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYCIVAADYSQIELRIMAHLSCD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              LKAF  G D++  T A  F +   +VT +QR   K +   L Y   A     ++   
Sbjct: 723 AGLLKAFSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMSAF---GLSRQL 779

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+  N     +        + +     +   E   + A E  ++ T  +  +      HS
Sbjct: 780 GIGRNEAQKYMN------LYFERYPGVQHYMEQTRQQAAEQGYVAT-LDGRRLYLPDIHS 832

Query: 516 RVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R +       +A       G A  II +    +    + +++  + +++     LV+
Sbjct: 833 RNAISRKAAERAAINAPMQGTAADIIKKAMASIDAWLLSQEEPLINMIMQVHDELVF 889


>gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
          Length = 884

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 360

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 417

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 418 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 467

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 468 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 527

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 528 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 586

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 587 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 615

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 616 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 732

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 733 LNIPRK----------------EAQKYMDLYFERYP------------------------ 752

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 753 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 785

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 786 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 842

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 843 EVHKDDVDAVAKQIHQLME 861


>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
 gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
          Length = 957

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 177/561 (31%), Gaps = 87/561 (15%)

Query: 34  AFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83
           +F   +         HD       + +      LK  LE+     V  N  ++ +VL   
Sbjct: 400 SFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDDTKAKVGQNLKYDASVLARY 459

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         ++L  +     T   
Sbjct: 460 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQ 516

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPLS----SKEQELWYLDQ 190
           +                 Y   D  VT  +  RL       E L+      E  L  +  
Sbjct: 517 I----------DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLS 566

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  +D       +Q + V   +L+Q+   +  G   +    ++L+T LF + GL 
Sbjct: 567 RMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIA-GQPFNMNSPKQLQTILFEQMGLP 625

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P                                   
Sbjct: 626 VIKKTPSGTPSTAEEVLQELALDYPLPS-------------------------------V 654

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            +++ G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 655 IMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 714

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF+ G+D++  T A    V+ 
Sbjct: 715 RRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSI 774

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      E +     +
Sbjct: 775 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQTYMD--KYFERYPGVMQY 829

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
               + N  +H   +   G           +  SR         +A       G A    
Sbjct: 830 MEDTRSNASQHGYVETIFGRRL-----HLPEITSRNVMRRKAAERAAINAPMQGTAADII 884

Query: 542 KRRDVPLVYMKKDKNNLILML 562
           K+  + +    +++ N  + L
Sbjct: 885 KKAMLLVDQWIQEEGNGRVKL 905


>gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 884

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 360

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 417

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 418 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 467

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 468 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 527

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 528 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 586

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 587 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 615

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 616 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 732

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 733 LNIPRK----------------EAQKYMDLYFERYP------------------------ 752

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 753 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 785

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 786 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 842

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 843 EVHKDDVDAVAKQIHQLME 861


>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 128/708 (18%), Positives = 215/708 (30%), Gaps = 178/708 (25%)

Query: 7   DFET--RSPIDLTKCGICK-YAEDVCVILFAFGFDDHP-----VELWDCVHD-----PVM 53
           D ET     +D+    +   YA+     L        P     V L     D       +
Sbjct: 323 DLETCQAFALDVETTALHPMYAD-----LVGIALATAPDRSYYVPLGHTTGDTQLDIEQV 377

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            Q L   L + +    AH+  ++  VL+       P        ++A      +A+    
Sbjct: 378 LQRLAPFLRHPEKQRYAHHGKYDALVLERA---GFPRPHIDFDTMIAAYLLGENAVGLKE 434

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +MEE  ELI R  K               R       +Y   DV  T  + +
Sbjct: 435 LAFTKLGWEMEEITELIGRGKKQ----------LTMDRAEIARVTQYACADVEATYRLVE 484

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L P              E  L  +   +   G  +DV     L+ ++D +   L++ + 
Sbjct: 485 VLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIY 544

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280
            L  G   +    ++L T LF E GL     T+T     Q VL + +   P    +   R
Sbjct: 545 ELA-GHPFNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYR 603

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                             +         P Q  P+  R H    
Sbjct: 604 QLL-------------------------------KLKSTYVDALPRQVHPQTGRVHTIFH 632

Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIAS---------EGKKLVVADLAGIEA 386
           Q +       +SDP+   I +       VR   IA          E   L+  D + IE 
Sbjct: 633 QTVAATGRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIEL 692

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A  + +   L+AF  G+D++  T +  F V    VT + R I KV+   + Y   A 
Sbjct: 693 RLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAY 752

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +A  TG++                                              R 
Sbjct: 753 ---GLARDTGMSRQDAQ-----------------------------------------RF 768

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            +A+ Q+   V+    E  +   + +   + +  R+R                  LP   
Sbjct: 769 IEAYFQRFPGVARYLEETRRRAAE-LGYVETLFGRRRY-----------------LP--- 807

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---- 622
                      +  N   RQ               +Q  + DI+   M+   +       
Sbjct: 808 ---------EITSSNPARRQAAERMA-----VNMPLQGTAADIMKLAMIAVHRPLAERGL 853

Query: 623 --DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
              ++L VHDE+V E P+++      ++   M+        +PL+ + 
Sbjct: 854 RSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVE--LSVPLEVDA 899


>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 931

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 177/561 (31%), Gaps = 87/561 (15%)

Query: 34  AFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83
           +F   +         HD       + +      LK  LE+     V  N  ++ +VL   
Sbjct: 374 SFAVAEGEAAYVPVAHDYLDAPEQLDREWVLAQLKPLLEDDTKAKVGQNLKYDASVLARY 433

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         ++L  +     T   
Sbjct: 434 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQ 490

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPLS----SKEQELWYLDQ 190
           +                 Y   D  VT  +  RL       E L+      E  L  +  
Sbjct: 491 I----------DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLS 540

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  +D       +Q + V   +L+Q+   +  G   +    ++L+T LF + GL 
Sbjct: 541 RMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIA-GQPFNMNSPKQLQTILFEQMGLP 599

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P                                   
Sbjct: 600 VIKKTPSGTPSTAEEVLQELALDYPLPS-------------------------------V 628

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            +++ G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 629 IMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF+ G+D++  T A    V+ 
Sbjct: 689 RRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSI 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      E +     +
Sbjct: 749 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD--KYFERYPGVMQY 803

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
               + N  +H   +   G           +  SR         +A       G A    
Sbjct: 804 MEDTRSNAAQHGYVETIFGRRL-----HLPEITSRNVMRRKAAERAAINAPMQGTAADII 858

Query: 542 KRRDVPLVYMKKDKNNLILML 562
           K+  + +    +++ N  + L
Sbjct: 859 KKAMLLVDQWIQEEGNGRVKL 879


>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
 gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
          Length = 928

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTRRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
 gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
          Length = 937

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 126/699 (18%), Positives = 214/699 (30%), Gaps = 160/699 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-PQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSQTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    PR +
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A  G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +    A               +   E A    F+ T   R + 
Sbjct: 773 -GLAKSLGIDNLSAKNFIDRYFARYP------GVAEYMQRTKEQAAAQGFVETLFGR-RL 824

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                H++ +       +A       G A    KR  +                      
Sbjct: 825 YLPDIHNKNANARAGAERAAINAPMQGTASDLIKRAMI---------------------- 862

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                            +   E            +A   D L             +++ V
Sbjct: 863 --------------DVSRWLSE-----------CEASLWDCLKS----------KLIMQV 887

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P+ + +     L  +M         +PL AE
Sbjct: 888 HDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 926


>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
 gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
          Length = 931

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/643 (16%), Positives = 196/643 (30%), Gaps = 156/643 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  ++ +VL      DI +       +LA    N +       
Sbjct: 405 EQLKPILEDDTQAKVGQNLKYDASVLARY---DIELKGIKHDTMLASYVYNSVGGKHDMD 461

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+         +++  +  K  T   +                 Y   D  VT  + 
Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELDEASPYAAEDADVTLRLH 511

Query: 173 KRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            RL     ++++L  + Q            I   G  +D       +Q +     +L+Q+
Sbjct: 512 NRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELEQK 571

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+  LF + GL +       T +T + VL       P    + 
Sbjct: 572 AYEIA-EQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLIL 630

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P        R H 
Sbjct: 631 EYR-------------------------------GLAKLKSTYTDKLPKMINSETGRVHT 659

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A +
Sbjct: 660 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAVDYSQIELRIMAHL 719

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+Q  L AF+ G+D++  T A        QV+ +QR   K +   L Y   A     +A
Sbjct: 720 SGDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAF---GLA 776

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+        +                                           + +
Sbjct: 777 KQLGIPRGEAQDYMN-----------------------------------------KYFE 795

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +   +   A  +  +     I  +R  +P +                R+ + R 
Sbjct: 796 RYPGVMQYMEDTRSAAAE--QGYVETIFGRRLHLPEI--------------KSRNGMRRK 839

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIV 625
               R+ +N                     Q  + DI+ + M+   +           ++
Sbjct: 840 A-AERAAINAPM------------------QGTAADIIKKAMLLVDQWIQAEGDGRVKLL 880

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           + VHDE+V E  ++        +  LM S    A  +PL AE 
Sbjct: 881 MQVHDELVFEVQESALTEIESKVQELMESAAELA--VPLVAEA 921


>gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
          Length = 928

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/621 (16%), Positives = 193/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+     V  N  ++R +L    N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++
Sbjct: 510 LKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHEIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   I  E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLA 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                   +A+ +     E +P                      
Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++         +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCET-PDTDEFNASMLYHLMT 652
           V E   D  +  A  ++ LM 
Sbjct: 885 VFEVHKDDVDAVAKQIHQLME 905


>gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 933

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/611 (16%), Positives = 198/611 (32%), Gaps = 88/611 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDPVMPQVLKEALEN 63
           +D    G+  Y     ++  +F  ++                  +        LK  LEN
Sbjct: 361 VDTETDGLD-YM-SANLVGISFALENGEAAYLPLHLDYLGAPKTLEKNTALSALKPILEN 418

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEALKLSSQK 122
            ++  +  N  F+ T+        I +      T++L+ +            A +    +
Sbjct: 419 PNIGKIGQNLKFDMTIFAR---NGIDLQGIEFDTMLLSYTLDSTGRHNMDDLAKRYLGHQ 475

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----FKRLEPL 178
               +++  +     T   +               GEY   D  VT ++    +++LEP 
Sbjct: 476 TISFEDIAGKGKNQLTFNQI----------PLEQAGEYAAEDADVTMKLQQVLWEKLEPQ 525

Query: 179 S-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                   S E  L  +   +   G  +D       +  +    T L+ +  +L  G   
Sbjct: 526 PGLVALYQSIELPLLSVLSRMERCGVLIDSDALFLQSNEITERLTALEMQAYALA-GQPF 584

Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF + GL +         +T + VL            +  +R       
Sbjct: 585 NLASTKQLQEILFGKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPKVLVEHR------- 637

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G S+         P    P+  R H    Q +T   
Sbjct: 638 ------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATG 673

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA +G K++ AD + IE R++A ++ +Q  + AF
Sbjct: 674 RLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINAF 733

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++ +T A  F +   QVT +QR   K +   L Y   +  F    +  G++    
Sbjct: 734 AQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFVFP---ARLGISRADA 790

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +      + + + + F   ++E        +   G           + +S  +    
Sbjct: 791 QRYMD--LYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRL-----YLPEINSSNAMRRK 843

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +        G A    KR  + L  + +D  ++ +++     LV+       ++ + 
Sbjct: 844 GTERVAINAPMQGTAADIIKRAMIKLDGITRDDPDIHMIMQVHDELVFEVRSEKIAFFSD 903

Query: 583 TTRQLTREYTY 593
             +Q       
Sbjct: 904 LIKQHMEAAAE 914


>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
 gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
          Length = 931

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 177/561 (31%), Gaps = 87/561 (15%)

Query: 34  AFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83
           +F   +         HD       + +      LK  LE+     V  N  ++ +VL   
Sbjct: 374 SFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDDTKAKVGQNLKYDASVLARY 433

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         ++L  +     T   
Sbjct: 434 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQ 490

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPLS----SKEQELWYLDQ 190
           +                 Y   D  VT  +  RL       E L+      E  L  +  
Sbjct: 491 I----------DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLS 540

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  +D       +Q + V   +L+Q+   +  G   +    ++L+T LF + GL 
Sbjct: 541 RMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIA-GQPFNMNSPKQLQTILFEQMGLP 599

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P                                   
Sbjct: 600 VIKKTPSGTPSTAEEVLQELALDYPLPS-------------------------------V 628

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            +++ G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 629 IMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF+ G+D++  T A    V+ 
Sbjct: 689 RRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSI 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      E +     +
Sbjct: 749 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD--KYFERYPGVMQY 803

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
               + N  +H   +   G           +  SR         +A       G A    
Sbjct: 804 MEDTRSNAAQHGYVETIFGRRL-----HLPEITSRNVMRRKAAERAAINAPMQGTAADII 858

Query: 542 KRRDVPLVYMKKDKNNLILML 562
           K+  + +    +++ N  + L
Sbjct: 859 KKAMLLVDQWIQEEGNGRVKL 879


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 114/674 (16%), Positives = 197/674 (29%), Gaps = 152/674 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALEN 63
           +D     +  Y     ++  +F  +          HD V  PQ L         +  LE+
Sbjct: 347 VDTETTSLD-YM-VAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILED 404

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
             V  V  N  ++ +VL    N  I +   +   +L     N + S     G ALK    
Sbjct: 405 DKVKKVGQNLKYDISVLA---NAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGH 461

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +++  +  K  T   +             +   Y   D  +T  + + L P   K
Sbjct: 462 KNIGFEDIAGKGAKQLTFNQI----------PLEVAAPYAAEDADITLRLHQHLWPRLEK 511

Query: 182 EQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E +L             +   I  +G  +D  L    +  +  +   L+++   +  G  
Sbjct: 512 EPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIA-GEK 570

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 571 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 626

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      S+         P     +  R H    Q     
Sbjct: 627 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 659

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA  G+K++ AD + IE R++A ++ +   LKA
Sbjct: 660 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKA 719

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F      VT +QR   K +   L Y   A     +A    +  N 
Sbjct: 720 FAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRNE 776

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +       R+M+E     A E  ++ T   R +    +   R +   
Sbjct: 777 AQTYIDT-----YFARYPGVLRYMEETRA-GAAELGYVSTLFGR-RLYLPEIRDRNAMRR 829

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +A       G A    K+  +                                   
Sbjct: 830 QGAERAAINAPMQGTAADIIKKAMI----------------------------------- 854

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
               Q  +  T G                   M          ++ VHDE+V E      
Sbjct: 855 -NIAQWIKTETQG----------------EIAM----------IMQVHDELVFEVDADKA 887

Query: 642 FNASM-LYHLMTSN 654
                 +  LM   
Sbjct: 888 ETLKQKVCELMAKA 901


>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
 gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
 gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli UMN026]
 gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
          Length = 928

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LEN     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLENEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   I  E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 114/674 (16%), Positives = 197/674 (29%), Gaps = 152/674 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALEN 63
           +D     +  Y     ++  +F  +          HD V  PQ L         +  LE+
Sbjct: 347 VDTETTSLD-YM-VAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILED 404

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
             V  V  N  ++ +VL    N  I +   +   +L     N + S     G ALK    
Sbjct: 405 DKVKKVGQNLKYDISVLA---NAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGH 461

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +++  +  K  T   +             +   Y   D  +T  + + L P   K
Sbjct: 462 KNIGFEDIAGKGAKQLTFNQI----------PLEVAAPYAAEDADITLRLHQHLWPRLEK 511

Query: 182 EQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E +L             +   I  +G  +D  L    +  +  +   L+++   +  G  
Sbjct: 512 EPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIA-GEK 570

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 571 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 626

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      S+         P     +  R H    Q     
Sbjct: 627 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 659

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA  G+K++ AD + IE R++A ++ +   LKA
Sbjct: 660 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKA 719

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F      VT +QR   K +   L Y   A     +A    +  N 
Sbjct: 720 FAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRNE 776

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +       R+M+E     A E  ++ T   R +    +   R +   
Sbjct: 777 AQTYIDT-----YFARYPGVLRYMEETRA-GAAELGYVSTLFGR-RLYLPEIRDRNAMRR 829

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +A       G A    K+  +                                   
Sbjct: 830 QGAERAAINAPMQGTAADIIKKAMI----------------------------------- 854

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
               Q  +  T G                   M          ++ VHDE+V E      
Sbjct: 855 -NIAQWIKTETQG----------------EIAM----------IMQVHDELVFEVDADKA 887

Query: 642 FNASM-LYHLMTSN 654
                 +  LM   
Sbjct: 888 ETLKQKVCELMAKA 901


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/643 (16%), Positives = 193/643 (30%), Gaps = 156/643 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  ++ +VL       I +       +LA    N +       
Sbjct: 406 EQLKPILEDDAQAKVGQNLKYDMSVLARY---GIEMKGIKHDTMLASYVFNSVGGKHDMD 462

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+         +++  +  K  T   +                 Y   D  VT  + 
Sbjct: 463 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELGEASPYAAEDADVTLRLH 512

Query: 173 KRL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            RL                 E  L  +   I   G  VD  L    +Q + V   +L+Q+
Sbjct: 513 NRLMENIEQDEKLKAIYEEIEVPLIPVMSRIERTGVFVDDMLLGAQSQEIAVRLDELEQK 572

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+  LF + GL +       + +T + VL       P    + 
Sbjct: 573 AYEIA-EQEFNMNSPKQLQAILFEKMGLPVIKKTPSGSPSTNEEVLQELALDYPLPKLII 631

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P        R H 
Sbjct: 632 EYR-------------------------------GLAKLKSTYTDKLPKMINAETGRVHT 660

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A +
Sbjct: 661 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHL 720

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L+AF+ G+D++  T A    V    VT +QR   K +   L Y   A     +A
Sbjct: 721 SGDKALLEAFQQGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNFGLIYGMSAF---GLA 777

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+      H + T                                         + +
Sbjct: 778 KQLGIPRGEAQHYMDT-----------------------------------------YFE 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +   +   A  +            +  V  +Y              GR L   +
Sbjct: 797 RYPGVMQYMEDTRSAASE------------QGFVETIY--------------GRRLHLPE 830

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
           +         +   + R+           +Q  + DI+ + M+               ++
Sbjct: 831 I--------QSRNGMRRKAAERA-AINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLL 881

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           + VHDE+V E  ++        +  LM S       +PL AE 
Sbjct: 882 MQVHDELVFEVEESSLAEIESKVQELMESAAE--LEVPLVAEA 922


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/692 (16%), Positives = 206/692 (29%), Gaps = 168/692 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQ--------VLKEALENT 64
           D    G+   + +  +I F+F             HD      Q         LK  LE+ 
Sbjct: 358 DTETDGLDTLSSN--LIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWVLAQLKPLLEDE 415

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N  F++++L      DI +       +L     + +         A +  + K
Sbjct: 416 KALKVGQNLKFDQSMLARY---DIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHK 472

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
               +E+  +     T   +          A    G Y   D  VT ++   L P   + 
Sbjct: 473 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQQS 522

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   I   G  +D  +    ++ + +   +L+++   L      
Sbjct: 523 EGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EEPF 581

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  L+ +  L +   T     +T + VL+      P    +   R       
Sbjct: 582 NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR------- 634

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 635 ------------------------GLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATG 670

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              + DP+   I         +R   IA +G +++ AD + IE R++A ++ +Q  L AF
Sbjct: 671 RLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDQGLLTAF 730

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T A  F +   +VT DQR   K +   L Y   A     +A    +     
Sbjct: 731 AAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMSAF---GLARQLNIPRGEA 787

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                        +       R   +  
Sbjct: 788 Q--------------------------------------------RYMDLYFERYPGVLE 803

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            + +  +Q  E G                             GR L   D+ +     N 
Sbjct: 804 YMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----RNA 836

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635
           T R+               +Q  + DI+   M+               +++ VHDE+V E
Sbjct: 837 TRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFE 891

Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
             ++   +A   +  LM  +   A  +PLK +
Sbjct: 892 VHESVLESAEQKIRELMEQSMQLA--VPLKVD 921


>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
 gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
          Length = 890

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/594 (17%), Positives = 200/594 (33%), Gaps = 87/594 (14%)

Query: 33  FAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKA 82
            +F   +         HD    PQ L  A         LE+     V  N  ++ +V+  
Sbjct: 332 MSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQLKPLLEDESKAKVGQNLKYDASVIAR 391

Query: 83  CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              +++   R   T++ +   N +         AL+         +++  +     T   
Sbjct: 392 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 449

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190
           +            +   +Y   D  VT  + +R+ PL  +           E  L  +  
Sbjct: 450 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYSEIEMPLVPVLS 499

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D  L    +Q + +   +L+Q+   L  G   +    ++L+T LF +  L 
Sbjct: 500 RIERTGVMIDDMLLSAQSQEIALRLDELEQKAYELA-GQSFNLSSPKQLQTILFEQMKLP 558

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +                              
Sbjct: 559 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 588

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            +++ G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 589 -IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 647

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V  
Sbjct: 648 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 707

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 708 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQEYMD-----KYFERYPGV 759

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--II 539
            ++M++     A E  ++ T   R +    +  SR +       +A       G A  II
Sbjct: 760 MQYMEDTRSR-AAELGYVETIFGR-RLHLPEITSRNAMRRKAAERAAINAPMQGTAADII 817

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
            +    V     ++    + L++     LV+    ++ S + +  +QL      
Sbjct: 818 KKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESAAE 871


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 119/672 (17%), Positives = 225/672 (33%), Gaps = 152/672 (22%)

Query: 33  FAFGFDDHPVELWDCVH--DPVMPQVLKEA-----LENTDVTIVAHNSYFERTVLKACFN 85
             +G            H     + Q +  A     L + D      N  F+R V   C  
Sbjct: 402 CCWGTQPDESAYIPIAHKFGENLSQDVVFAELSPILTSADYPKTFQNGKFDRLVF-RCQG 460

Query: 86  LDIPIHRWICTLVLARSNGLPS--------ALKAVGEALKLSSQKMEEGKELIARFCKGE 137
           + +     +   +LA     P         +L+ +G  LK     + +G+ +        
Sbjct: 461 IKL--AGIVFDTMLASYVLNPDTPHNLNDISLRYLGLILKSYEDLVPKGQTIA------- 511

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELW 186
                          +    G YC   V  T ++ ++L             L   EQ L 
Sbjct: 512 -------------DISIASVGYYCCLQVHATFQLVQKLREELEKFPALHKLLLEVEQPLE 558

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +   +   G C++ A  H L+Q ++++  KL++   S+  G   +    ++L   LF +
Sbjct: 559 AVLAEMEYTGVCINSAYLHELSQQLEIDLAKLEETATSIA-GETFNLGSPKQLSVILFDK 617

Query: 247 TGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            GL  +     +T     +++ +KL                            ++  G +
Sbjct: 618 LGLSTKYSRKIKTGYSTDVATLEKLQE--------------------------VDETGFV 651

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
              +++   S+         P    P   R H   +Q +T      +S+P+   I     
Sbjct: 652 DAMMEYRTLSKLKSTYVDALPALVRPDTQRLHTNFNQTVTATGRLSSSNPNLQNIPIRTA 711

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            S  +R   +   G  +  AD + IE R+LA ++ E   L+A++  ED++  T    F  
Sbjct: 712 FSRQIRKAFLPESGYLMAAADYSQIELRILAHLSQEPILLQAYQQNEDIHTVTARLVF-- 769

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
             + +T D+R I K +   + Y  G+    + + +TG++ +     +K  +  E +    
Sbjct: 770 EKSDITSDERRIAKTINFGVIYGMGS---LRFSRSTGIDKSIANEFIKRFN--ERYPQVF 824

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            +     E   + AI   ++ T   R          R  +  N+                
Sbjct: 825 AYL----EGVKKQAISQGYVETILGR---------RRYVDFKND---------------- 855

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                    +   K+     + L   ++L   D G  RS  N                  
Sbjct: 856 --------SLRKLKNSKPEDIDLSKLKNLGPEDAGLLRSAANAP---------------- 891

Query: 600 NIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654
             +Q  S DI+   M+       K    ++L VHDE+V E P  + E     +  +M + 
Sbjct: 892 --IQGSSADIIKIAMIRMHEVLQKYQARLLLQVHDELVFEVPPQEWEELQPQIKSVMENA 949

Query: 655 PSWAKGLPLKAE 666
            +    +PL  +
Sbjct: 950 VT--LSVPLLVD 959


>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
 gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
          Length = 938

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/594 (17%), Positives = 199/594 (33%), Gaps = 87/594 (14%)

Query: 33  FAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
            +F   +         HD            +   LK  LE+     V  N  ++ +V+  
Sbjct: 380 VSFAVAEGEAAYIPVAHDYLDAPQQLDREWVITQLKPLLEDESKAKVGQNLKYDASVMAR 439

Query: 83  CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              +++   R   T++ +   N +         AL+         +++  +     T   
Sbjct: 440 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190
           +            +   +Y   D  VT  + +R+ PL  +           E  L  +  
Sbjct: 498 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLS 547

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D  L    +Q + +   +L+++   L  G   +    ++L+T LF +  L 
Sbjct: 548 RIERTGVMIDDMLLSAQSQEIALRLDELEKKAYELA-GQPFNLSSPKQLQTILFEQMKLP 606

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +                              
Sbjct: 607 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 636

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            +++ G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 637 -IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 695

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V  
Sbjct: 696 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 755

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 756 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQEYMD-----KYFERYPGV 807

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--II 539
            ++M++     A E  ++ T   R +    +  SR +       +A       G A  II
Sbjct: 808 MQYMEDTRSR-AAELGYVETIFGR-RLHLPEITSRNAMRRKAAERAAINAPMQGTAADII 865

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
            +    V     ++    + L++     LV+    ++ S + +  +QL      
Sbjct: 866 KKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESAAE 919


>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891]
 gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891]
          Length = 931

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 108/643 (16%), Positives = 199/643 (30%), Gaps = 156/643 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  ++ +VL       I +       +LA    N +       
Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY---GIEMKGIKHDTMLASYVYNSVGGKHDMD 461

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+         +++  +  K  T   +                 Y   D  VT  + 
Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELDEASPYAAEDADVTLRLH 511

Query: 173 KRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQE 221
            RL     ++++L  + Q I              G  +D       +Q +     +L+Q+
Sbjct: 512 NRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLGAQSQEIAQRLDELEQQ 571

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+  LF + GL +       T +T + VL       P    + 
Sbjct: 572 AYEIA-EQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLIL 630

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P   R H 
Sbjct: 631 EYR-------------------------------GLAKLKSTYTDKLPKMINPETGRVHT 659

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA  G K++  D + IE R++A +
Sbjct: 660 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHL 719

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L+AF+ G+D++  T A        QV+ +QR   K +   L Y   A     +A
Sbjct: 720 SGDKALLEAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAF---GLA 776

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+                    A+++     E +P                      
Sbjct: 777 KQLGIPRGE----------------AQDYMNKYFERYP---------------------- 798

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                            Q +E+ ++  A ++  V  +Y              GR L   +
Sbjct: 799 --------------GVMQYMEDTRS-TASEQGYVETIY--------------GRRLHLPE 829

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
           +         +   + R+           +Q  + DI+ + M+               ++
Sbjct: 830 I--------QSRNGMRRKAAERA-AINAPMQGTAADIIKKAMLLVDEWIQTEGDGRVKLL 880

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           + VHDE+V E  ++        +  LM S       +PL AE 
Sbjct: 881 MQVHDELVFEVQESALTEIESKVQELMESAAE--LDVPLVAEA 921


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/674 (16%), Positives = 202/674 (29%), Gaps = 166/674 (24%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD            + + LK  LE+     V  N  ++ +VL   
Sbjct: 376 SFATDEGVAAYVPVAHDYLDAPQQLDRDWVLEQLKPILEDDAQAKVGQNLKYDMSVLARY 435

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         +++  +  K  T   
Sbjct: 436 ---GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQ 492

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL                 E  L  +  
Sbjct: 493 I----------ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMS 542

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D  L    +Q + V   +L+Q+   +      +    ++L+  LF + GL 
Sbjct: 543 RIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 601

Query: 251 LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +   T +    T + VL       P    +                              
Sbjct: 602 VIKKTPSGAPSTNEEVLQELALDYPLPKLI------------------------------ 631

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            +++ G ++         P        R H    Q +T      ++DP+   I       
Sbjct: 632 -IEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 690

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G++  L+AF+ G+D++  T A    V  
Sbjct: 691 RRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDI 750

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             VT +QR   K +   L Y   A     +A   G+      H + T             
Sbjct: 751 ESVTTEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQHYMDT------------- 794

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                       + +++  V +   +   A  +           
Sbjct: 795 ----------------------------YFERYPGVMQYMEDTRSAASE----------- 815

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            +  V  +Y              GR L   ++         +   + R+           
Sbjct: 816 -QGFVETIY--------------GRRLHLPEI--------QSRNGMRRKAAERA-AINAP 851

Query: 602 VQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653
           +Q  + DI+ + M+               +++ VHDE+V E  ++        +  LM S
Sbjct: 852 MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAEIESKVQELMES 911

Query: 654 NPSWAKGLPLKAEG 667
                  +PL AE 
Sbjct: 912 AAE--LEVPLVAEA 923


>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
 gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
          Length = 938

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 104/594 (17%), Positives = 199/594 (33%), Gaps = 87/594 (14%)

Query: 33  FAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKA 82
            +F   +         HD    PQ L  A         LE+     V  N  ++ +V+  
Sbjct: 380 VSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQLKPLLEDESKAKVGQNLKYDASVMAR 439

Query: 83  CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              +++   R   T++ +   N +         AL+         +++  +     T   
Sbjct: 440 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190
           +            +   +Y   D  VT  + +R+ PL  +           E  L  +  
Sbjct: 498 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLS 547

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D  L    +Q + +   +L+++   L  G   +    ++L+T LF +  L 
Sbjct: 548 RIERTGVMIDDMLLSAQSQEIALRLDELEKKAYELA-GQPFNLSSPKQLQTILFEQMKLP 606

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +                              
Sbjct: 607 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 636

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            +++ G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 637 -IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 695

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V  
Sbjct: 696 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 755

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 756 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQEYMD-----KYFERYPGV 807

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--II 539
            ++M++     A E  ++ T   R +    +  SR         +A       G A  II
Sbjct: 808 MQYMEDTRSR-AAELGYVETIFGR-RLHLPEITSRNGIRRKAAERAAINAPMQGTAADII 865

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
            +    V     ++    + L++     LV+    ++ S + +  +QL      
Sbjct: 866 KKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESAAE 919


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%)

Query: 15  DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62
           D    G+    + +   L    F             HD     PQ         LK  LE
Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120
           +     V  N  F++++L       I +       +L     + +         A +  +
Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K    +E+  +     T   +          A    G Y   D  VT ++   L P   
Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520

Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +           E  L  +   I   G  +D  +    ++ + +   +L+++   L    
Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERAGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  L+ +  L +   T     +T + VL+      P    +   R     
Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR----- 634

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                     G ++         P    P   R H    Q +T 
Sbjct: 635 --------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + DP+   I         +R   IA +G  ++ AD + IE R++A ++ +   L 
Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F     +VT +QR   K +   L Y   A     +A   G+   
Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                          +       R   +
Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +  +Q  E G                             GR L   D+ +     
Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633
           N   R+               +Q  + DI+   M+          +    +++ VHDE+V
Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 890 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 921


>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
 gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
          Length = 984

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/634 (19%), Positives = 206/634 (32%), Gaps = 147/634 (23%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
            PV L     D   P  L+  LE+  VT +A N+ ++  VL++     + +       +L
Sbjct: 446 EPVNLPPFDSDACAP--LRAMLEDPSVTKIAQNAKYDLLVLRSS---GVRVAGVGFDTML 500

Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           A     P   +      AL+     M     L+    KG+T         P         
Sbjct: 501 ASYVLDPGRRSHGLDLLALEQLGHTMTAYDTLVG---KGKTQ-------LPFDVAPVDTA 550

Query: 158 GEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTL 207
            +Y   DV +T  +  +LEP+ ++          E  L  +   +   G  +D+    +L
Sbjct: 551 RDYSCEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSVLAEMEWEGIAIDLDWFASL 610

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
                 ER +++Q + +   G   +     KL+  LF + GL ++  T T      S  +
Sbjct: 611 KARFAAERGRVEQAIYAEA-GEEFNINSNPKLRAILFEKLGLPVKKKTATGPSTDASVLQ 669

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +L  +   V    +                          +++    +         P  
Sbjct: 670 ELAEE-GHVLPTLL--------------------------MEYREIFKLEGTYIDALPRL 702

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLA 382
             PR  R H    Q ++      + DP+   I     +   +R   +  EG +L+ AD +
Sbjct: 703 VHPRDRRLHTSYSQTVSATGRLSSHDPNLQNIPIRRELGRDIRRGFVPREGWRLLSADYS 762

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA ++ +   + AF+ G D++  T A  F V    VT + RA  K +  A  Y 
Sbjct: 763 QIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARAKTINFATIYG 822

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
            GA A  +    T                     +A+ F     E               
Sbjct: 823 QGAHALSRQLRITN-------------------AEAKAFIETYFE--------------- 848

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561
                        R + +   L Q        G    + ++RR +P +            
Sbjct: 849 -------------RFAGVRGFLDQCVVDARARGYVETLFKRRRYIPEL------------ 883

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
               R+   R  G  R   N                    +Q  + D++   M+N   A 
Sbjct: 884 --KERNFNIRAFGE-RVAQNAP------------------IQGSAADLIKIAMINVRNAI 922

Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                   ++L VHDE+V E P  +    S L  
Sbjct: 923 DAEGLASRMLLQVHDELVFELPVEEADTLSALVK 956


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%)

Query: 15  DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62
           D    G+    + +   L    F             HD     PQ         LK  LE
Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120
           +     V  N  F++++L       I +       +L     + +         A +  +
Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K    +E+  +     T   +          A    G Y   D  VT ++   L P   
Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520

Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +           E  L  +   I   G  +D  +    ++ + +   +L+++   L    
Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  L+ +  L +   T     +T + VL+      P    +         
Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILE------- 632

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                   + G ++         P    P   R H    Q +T 
Sbjct: 633 ------------------------YRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + DP+   I         +R   IA +G  ++ AD + IE R++A ++ +   L 
Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F     +VT +QR   K +   L Y   A     +A   G+   
Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                          +       R   +
Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +  +Q  E G                             GR L   D+ +     
Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633
           N   R+               +Q  + DI+   M+          +    +++ VHDE+V
Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 890 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 921


>gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
           Polymerase I Complexed With DTMP
 gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
           Polymerase I Complexed With Deoxynucleoside Triphosphate
           And Pyrophosphate
          Length = 605

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 81

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G ++         P    P+  R H   
Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 564 EVHKDDVDAVAKQIHQLME 582


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 108/594 (18%), Positives = 192/594 (32%), Gaps = 89/594 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHD--PVMPQV-- 56
           + +D ET S   L             V+ F F  +      V +  C       +P+   
Sbjct: 318 ISVDTETTSLNPLL----------AEVVGFCFAVEPGHGWYVPVGHCGGGAEEQLPRDEV 367

Query: 57  ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111
              ++  LE+  +  V  N  ++  VL+      I +   +   +L      P   +   
Sbjct: 368 VAQVQPLLEDATLAKVGQNLKYDALVLRRA---GIALRGVVADTMLQSYLLYPAARSHGL 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A      KM    E+     K    +  +D        A  +   Y   D  +T ++
Sbjct: 425 DALAADHLGYKMISYSEVAGTGKK----QIGFD------EVALDVATRYAAEDADITLQL 474

Query: 172 FKRL---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           ++R          E   + E  L  +   +   G  VD      L+        +L+Q++
Sbjct: 475 YQRFDAELDGTLRELFETVEMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSIKQLEQQI 534

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
             L  G   +    ++L   LF +  L     T+T     +   K L  +   V      
Sbjct: 535 YELA-GEEFNINSPKQLGVILFEKLDLPHGKKTKTGWSTAVDVLKNLADKHDVVAL---- 589

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                    LQ+   ++         P    P   R H   +Q 
Sbjct: 590 ------------------------ILQYRSLAKLKGTYTDALPLLIHPDSGRIHTSFNQA 625

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      +SDP+   I         +R   +   G+ L+ AD + IE RV+A MA E  
Sbjct: 626 VTATGRLSSSDPNLQNIPIRSEEGRAIREAFVPDAGQVLLAADYSQIELRVMAHMADEPI 685

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             ++F  GED++  T +  F+V P  V  + R   K +   + Y  GA +    A   G+
Sbjct: 686 LQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAKTINFGVLYGMGAFSL---AKDLGI 742

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       +      E +     F    ++   EH   +  +G  C     A    +S+ 
Sbjct: 743 SNKEAKQYID--HYFERYPAVLEFIEQQKQFGREHLYVETLLGRRC-----AVSDINSKN 795

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
            ++ +   +        G A    K   V +    +D      ++L     LV+
Sbjct: 796 GQVRSYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVLQVHDELVF 849


>gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227]
          Length = 605

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 81

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G ++         P    P+  R H   
Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 507 SSNGARRAAAERTAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 564 EVHKDDVDAVAKQIHQLME 582


>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 128/708 (18%), Positives = 215/708 (30%), Gaps = 178/708 (25%)

Query: 7   DFET--RSPIDLTKCGICK-YAEDVCVILFAFGFDDHP-----VELWDCVHD-----PVM 53
           D ET     +D+    +   YA+     L        P     V L     D       +
Sbjct: 323 DLETCQAFALDVETTALHPMYAD-----LVGIALATAPDRSYYVPLGHTTGDTQLDIEQV 377

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            Q L   L + +    AH+  ++  VL+       P        ++A      +A+    
Sbjct: 378 LQRLAPFLRHPEKQRYAHHGKYDALVLERA---GFPRPHIDFDTMIAAYLLGENAVGLKE 434

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +MEE  ELI R  K               R       +Y   DV  T  + +
Sbjct: 435 LAFTKLGWEMEEITELIGRGKKQ----------LTMDRAEIARVTQYACADVEATYRLVE 484

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L P              E  L  +   +   G  +DV     L+ ++D +   L++ + 
Sbjct: 485 VLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIY 544

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280
            L  G   +    ++L T LF E GL     T+T     Q VL + +   P    +   R
Sbjct: 545 ELA-GHPLNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYR 603

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                             +         P Q  P+  R H    
Sbjct: 604 QLL-------------------------------KLKSTYVDALPRQVHPQTGRVHTIFH 632

Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIAS---------EGKKLVVADLAGIEA 386
           Q +       +SDP+   I +       VR   IA          E   L+  D + IE 
Sbjct: 633 QTVAATGRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIEL 692

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A  + +   L+AF  G+D++  T +  F V    VT + R I KV+   + Y   A 
Sbjct: 693 RLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAY 752

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +A  TG++                                              R 
Sbjct: 753 ---GLARDTGMSRQDAQ-----------------------------------------RF 768

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            +A+ Q+   V+    E  +   + +   + +  R+R                  LP   
Sbjct: 769 IEAYFQRFPGVARYLEETRRRAAE-LGYVETLFGRRRY-----------------LP--- 807

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---- 622
                      +  N   RQ               +Q  + DI+   M+   +       
Sbjct: 808 ---------EITSSNPARRQAAERMA-----VNMPLQGTAADIMKLAMIAVHRPLAERGL 853

Query: 623 --DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
              ++L VHDE+V E P+++      ++   M+        +PL+ + 
Sbjct: 854 RSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVE--LSVPLEVDA 899


>gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
           Manganese
 gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
           Only
 gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
           Manganese
 gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
 gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
           And Europium (Iii) Ion
 gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Short Dna Fragment Carrying 2'-0-
           Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
 gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna Tetramer Carrying
           2'-O-(3-Aminopropyl)- Rna Modification
           5'-D(Tt)-Ap(U)-D(T)-3'
 gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431]
 gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G]
 gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180]
 gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357]
 gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74]
          Length = 605

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 81

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G ++         P    P+  R H   
Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 564 EVHKDDVDAVAKQIHQLME 582


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 108/643 (16%), Positives = 197/643 (30%), Gaps = 156/643 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  ++ +VL       I +       +LA    N +       
Sbjct: 411 EQLKPILEDDTQAKVGQNLKYDMSVLARY---GIEMKGIKHDTMLASYVFNSVGGKHDMD 467

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+         +++  +  K  T   +                 Y   D  VT  + 
Sbjct: 468 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELGEASPYAAEDADVTLRLH 517

Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            RL                 E  L  +   I   G  +D  L    +Q + V   +L+Q+
Sbjct: 518 NRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQK 577

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+  LF + GL +   T +    T + VL       P    + 
Sbjct: 578 AYEIA-EQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLI- 635

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                         +++ G ++         P        R H 
Sbjct: 636 ------------------------------IEYRGLAKLKSTYTDKLPKMINAETGRVHT 665

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A +
Sbjct: 666 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHL 725

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L+AF+ G+D++  T A    VA  QVT +QR   K +   L Y   A     +A
Sbjct: 726 SGDKALLEAFQQGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIYGMSAF---GLA 782

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+      H + T                                         + +
Sbjct: 783 KQLGIPRGEAQHYMDT-----------------------------------------YFE 801

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +   +   A  +            +  V  +Y              GR L   +
Sbjct: 802 RYPGVMQYMEDTRSAASE------------QGFVETIY--------------GRRLHLPE 835

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
           +         +   + R+           +Q  + DI+ + M+               ++
Sbjct: 836 I--------QSRNGMRRKAAERA-AINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLL 886

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           + VHDE+V E  ++        +  LM S       +PL AE 
Sbjct: 887 MQVHDELVFEVQESALAEIESKVQQLMESAAD--LEVPLVAEA 927


>gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120]
          Length = 810

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 237 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 286

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 287 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 343

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 344 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDSDVTLQLHLK 393

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 394 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 453

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 454 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 512

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 513 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 541

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 542 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 601

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 602 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 658

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 659 LNIPRK----------------EAQKYMDLYFERYP------------------------ 678

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 679 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 711

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 712 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 768

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 769 EVHKDDVDAVAKQIHQLME 787


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%)

Query: 15  DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62
           D    G+    + +   L    F             HD     PQ         LK  LE
Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120
           +     V  N  F++++L       I +       +L     + +         A +  +
Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K    +E+  +     T   +          A    G Y   D  VT ++   L P   
Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520

Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +           E  L  +   I   G  +D  +    ++ + +   +L+++   L    
Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  L+ +  L +   T     +T + VL+      P    +   R     
Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR----- 634

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                     G ++         P    P   R H    Q +T 
Sbjct: 635 --------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + DP+   I         +R   IA +G  ++ AD + IE R++A ++ +   L 
Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F     +VT +QR   K +   L Y   A     +A   G+   
Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                          +       R   +
Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +  +Q  E G                             GR L   D+ +     
Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633
           N   R+               +Q  + DI+   M+          +    +++ VHDE+V
Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 890 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 921


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 932

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%)

Query: 15  DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62
           D    G+    + +   L    F             HD     PQ         LK  LE
Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120
           +     V  N  F++++L       I +       +L     + +         A +  +
Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K    +E+  +     T   +          A    G Y   D  VT ++   L P   
Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520

Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +           E  L  +   I   G  +D  +    ++ + +   +L+++   L    
Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  L+ +  L +   T     +T + VL+      P    +   R     
Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR----- 634

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                     G ++         P    P   R H    Q +T 
Sbjct: 635 --------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + DP+   I         +R   IA +G  ++ AD + IE R++A ++ +   L 
Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F     +VT +QR   K +   L Y   A     +A   G+   
Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                          +       R   +
Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +  +Q  E G                             GR L   D+ +     
Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633
           N   R+               +Q  + DI+   M+          +    +++ VHDE+V
Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 890 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 921


>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
 gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
          Length = 930

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 100/595 (16%), Positives = 184/595 (30%), Gaps = 89/595 (14%)

Query: 33  FAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
            +F  D+         HD            + + LK  LE+     V  N  ++ +VL  
Sbjct: 372 VSFATDEGVAAYVPLAHDYLDAPQQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLAR 431

Query: 83  CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                I +       +LA    N +         AL+         +++  +     T  
Sbjct: 432 Y---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFN 488

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLD 189
            +                 Y   D  VT  +  RL                 E  L  + 
Sbjct: 489 QI----------DLNEAAPYAAEDADVTLRLHNRLAANIEQDKKLKAVYEEIEMPLVPVL 538

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             I   G  +D       +  +     +L+Q+   +      +    ++L+  LF + GL
Sbjct: 539 SRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQALLFEKMGL 597

Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
            +       T +T + VL       P    +                             
Sbjct: 598 PVIKKTPSGTPSTNEEVLQELALDYPLPKLILE--------------------------- 630

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
               + G ++         P    P   R H    Q +T      ++DP+   I      
Sbjct: 631 ----YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 686

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+
Sbjct: 687 GRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHTATAAEIMGVS 746

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              V+ +QR   K +   L Y   A     +A   G+        +      + +E    
Sbjct: 747 IEDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPG 798

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--I 538
             ++M E+    A E  ++ T   R +    +  SR         +A       G A  I
Sbjct: 799 VMQYM-EDTRSAAAEQGYVETIFGR-RLHLPEIQSRNGMRRKAAERAAINAPMQGTAADI 856

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           I +    V     +     + L++     LV+    ++ S + +  ++L      
Sbjct: 857 IKKAMLLVGRWIEEHGDGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 911


>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
 gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
          Length = 913

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 112/595 (18%), Positives = 191/595 (32%), Gaps = 87/595 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56
           +  D ET + ID         A+   V+  +F   +         H        + +   
Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
              LK  LE+     V  ++ ++  VL    +  I +       +L     +   +    
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169
              ALK         +++  +  K  T + +          A    G Y   D  VT   
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492

Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              ++++LE +          E  L  +   I   G  VD  L    ++ +  +   L++
Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +   L  G   +    ++L   L+ + GL +   T T       +   L   A Q F   
Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   +  +Q+   S+         P Q  PR  R H    
Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   +A +G KL+ AD + IE R++A +A +
Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G D++  T A  F V    V+ DQR   K +   L Y   A     +A   
Sbjct: 706 DGLLDAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +    A               E     A E  F+ T   R +    + HS
Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
           +   +     +        G A    KR  V +    ++   +  ++L     LV
Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 103/558 (18%), Positives = 180/558 (32%), Gaps = 75/558 (13%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           F   +   PV+L     + V+   LK  LE+     V  N  ++R VL    N DI +  
Sbjct: 377 FGHDYLGAPVQL----SEAVVLGKLKPLLEDPTCLKVGQNLKYDRNVL---LNHDIDLQG 429

Query: 93  WICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                +L     N   S       A +    +    +++  +  K  T   +        
Sbjct: 430 IAYDTMLESYVLNSTASRHDMDSLAKRYLGVETTSFEDIAGKGVKQLTFNQI-------- 481

Query: 151 REAWRLFGEYCKGDVTVTREIFK----RLEPLS-------SKEQELWYLDQTINDRGYCV 199
                    Y   D  +T  + +    +LE +          E  L  +   +   G  +
Sbjct: 482 --ELEQAAPYAAEDADITLRLHQTLWGQLEAVPGLAKVFSEIELPLLPVLARMELLGTTI 539

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D  L H  +Q +++   +L+++   L  G   +    ++L   LF + GL +   T    
Sbjct: 540 DPKLLHQQSQEIELRLAELEKQAHELA-GQEFNLSSPKQLGEILFTKLGLPIIKKTPKGA 598

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
                       +  ++    M                           +  G ++    
Sbjct: 599 PSTAEEVLAELAETYELPQLLM---------------------------EHRGLAKLKST 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374
                P    P+  R H    Q +       +SDP+   I         +R   I S G 
Sbjct: 632 YTDKLPLMIKPQTGRVHTSYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGY 691

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           KLV AD + IE R++A ++G++  L AF  G+D++  T A  F VA   VT D R   K 
Sbjct: 692 KLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDMRRSAKA 751

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   L Y   A     +A   G+        +      E +     +    ++       
Sbjct: 752 INFGLIYGMSAF---GLAKQLGIGRAEAQKYMD--LYFERYPGVLEYMERTRQQAEAQGY 806

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMK 552
            +   G              SR + L     +A       G A  II R   +V      
Sbjct: 807 VETLFGRRL-----YLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRG 861

Query: 553 KDKNNLILMLPSGRSLVY 570
            +  ++ +++     LV+
Sbjct: 862 IEDESIRMLMQVHDELVF 879


>gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v]
          Length = 605

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 81

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G ++         P    P+  R H   
Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D E  A  ++ LM 
Sbjct: 564 EVHKDDLEAVAKKIHQLME 582


>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 938

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 104/594 (17%), Positives = 200/594 (33%), Gaps = 87/594 (14%)

Query: 33  FAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKA 82
            +F   +         HD    PQ L         K  LE+     V  N  ++ +V+  
Sbjct: 380 VSFAVAEGEAAYIPVAHDYLDAPQQLDRDWVIAQLKPLLEDESKAKVGQNLKYDASVMAR 439

Query: 83  CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              +++   R   T++ +   N +         AL+         +++  +     T   
Sbjct: 440 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190
           +            +   +Y   D  VT  + +R+ PL  +           E  L  +  
Sbjct: 498 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLS 547

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D  L    +Q + +   +L+++   L  G   +    ++L+T LF +  L 
Sbjct: 548 RIERTGVMIDDMLLSAQSQEIALRLDELEKKAYELA-GQPFNLSSPKQLQTILFEQMKLP 606

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +                              
Sbjct: 607 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 636

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            +++ G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 637 -IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 695

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V  
Sbjct: 696 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 755

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 756 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQEYMD-----KYFERYPGV 807

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--II 539
            ++M++     A E  ++ T   R +    +  SR +       +A       G A  II
Sbjct: 808 MQYMEDTRSR-AAELGYVETIFGR-RLHLPEITSRNAMRRKAAERAAINAPMQGTAADII 865

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
            +    V     ++    + L++     LV+    ++ S + +  +QL      
Sbjct: 866 KKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESAAE 919


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/588 (15%), Positives = 190/588 (32%), Gaps = 80/588 (13%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------A 60
           E    ID     +        ++  +   ++         HD   PQ+L+E         
Sbjct: 319 EAFC-IDTETTSLD--VMMAEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLTALNPI 375

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKL 118
           LEN  +  +  N  ++ +VL+   N  I +       +L        +        ALK 
Sbjct: 376 LENPTIKKIGQNLKYDYSVLR---NHGITLKGIYYDTMLESYVLNSGSGRHDMDSLALKY 432

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K    +E+  +  K    + +               G Y   D  +T ++  +L PL
Sbjct: 433 LGHKTISYEEIAGKGAKQLRFDQIPV----------EKAGAYAAEDADITLQLHHKLYPL 482

Query: 179 SSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             +         E  L  +   +   G  +D A      + +      L++E   L  G 
Sbjct: 483 IPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQHGERLKERIRTLEEEALHLA-GK 541

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +    ++L+  LF    L +   T T       +  +        ++ R+ A      
Sbjct: 542 PFNLNSPKQLQEILFDSHKLPIIAKTPTGQPSTAEAVLQELA-----YDYRLAA------ 590

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                             L++   ++         P +  P+ +R H   +Q +T     
Sbjct: 591 ----------------VILEYRSLTKLVSTYIDALPKKINPKTNRVHTSYNQAVTATGRL 634

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +S+P+   I         +R+  IA E   ++ AD + IE R++A ++ ++  LKAF  
Sbjct: 635 SSSEPNLQNIPIRSEEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDENLLKAFAN 694

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T +  F +   ++  +QR   K +   L Y   +     +A   G+      +
Sbjct: 695 GWDVHAATASEIFQIPLEEINNEQRRRAKAINFGLIYGMSSF---GLAKQIGVERQDAQY 751

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            + T    + +     +    ++        +   G           + ++R        
Sbjct: 752 YIDT--YFQRYPKVLEYMNRTRQQAHHQGYVETLFGRRL-----YLPEINARNLMRQKAA 804

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVY 570
            +        G A    K   + +   +   +K    +++     LV+
Sbjct: 805 ERTAINAPMQGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHDELVF 852


>gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/643 (16%), Positives = 199/643 (30%), Gaps = 161/643 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110
           LK  LE++++  +  N  F+  VL            D  +  ++   V            
Sbjct: 404 LKPLLEDSNLLKIGQNIKFDCGVLVRYGIELQGIAYDTMLESYVLNSVAGM-----GRHD 458

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A +  + K    +E+  +     T   +                 Y   D  VT +
Sbjct: 459 MDSLAERHLNYKTTTFEEIAGKGKNQLTFNQVPV----------EQAAMYAAEDADVTLQ 508

Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + + P   K           E  L  +   +   G  ++  +    ++ + V   +L+
Sbjct: 509 LHQVIWPQLEKVPALEKVFLETEMPLIMVLSRMERAGVLINSDILAEHSKEIAVRLDELE 568

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           +E   L  G V +    ++L+T LF +  L +   T     +T + VL            
Sbjct: 569 KEAHELA-GEVFNLASPKQLQTILFEKLNLPVVKKTPGGAPSTNEEVLEELVDHHELPKV 627

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R                               G ++         P    P   R 
Sbjct: 628 ILEHR-------------------------------GLAKLKSTYTDKLPQMVHPLTKRV 656

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H    Q +T      + DP+   I         +R   IASEG +++ AD + IE R++A
Sbjct: 657 HTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIASEGYRIMAADYSQIELRIMA 716

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +Q  LKAF  G+D++  T A  F+V   QVT +QR   K +   L Y   A     
Sbjct: 717 HLSQDQGLLKAFAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMSAF---G 773

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           ++   G+                                                  +  
Sbjct: 774 LSRQLGIPRGEAQ--------------------------------------------RYM 789

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                R   +   + +  EQ  E G                        +   +GR L  
Sbjct: 790 DLYFERYPGVLAYMERTREQAEEQG-----------------------YVETLAGRRLYL 826

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624
            D+ +     N T R+               +Q  + DI+ + M+              +
Sbjct: 827 PDIKS----RNGTRRKAAEREA-----INAPMQGTAADIIKKAMIAVDDWIISEAPKVRM 877

Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           ++ VHDE+V E  +++ E     +  LM  +      +PL+ +
Sbjct: 878 IMQVHDELVFEVHESELENTEQKIRELMEKSVV--LDVPLQVD 918


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/612 (16%), Positives = 188/612 (30%), Gaps = 91/612 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D    G+  Y     V+  +F  ++         HD            + + LK  LE+ 
Sbjct: 349 DTETDGLD-YM-TANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRDWVLEQLKPLLEDP 406

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               +  N  F+ +++       I +   +   +L     N +         AL+    K
Sbjct: 407 KQAKIGQNLKFDASIVARY---GIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHK 463

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
               +E+  +  K  T   +               G Y   D  +T  +   L P     
Sbjct: 464 NISFEEVAGKGKKQLTFNQI----------DLEQAGPYAAEDADITLRLHNTLYPKVEAD 513

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   +   G  VD  L    +  +     +++++   +      
Sbjct: 514 DKLNHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAARLDEIEKKAFEIA-EQEF 572

Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF + GL +       T +T + VL       P    +   R       
Sbjct: 573 NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLLLEYR------- 625

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 626 ------------------------GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATG 661

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   +A  G K++  D + IE R++A ++G++  L AF
Sbjct: 662 RLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAF 721

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T A   ++   +V+ +QR   K +   L Y   A     +A    +  N  
Sbjct: 722 RHGKDIHAATAAEILSLDIEEVSSEQRRRAKAINFGLIYGMSAF---GLAKQLDMGRNEA 778

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
            + +  N   E +     +    +    E    +   G              SR      
Sbjct: 779 QNYM--NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRL-----YLPDIKSRNGLRRK 831

Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +A       G A  II      V     ++ + N+ L++     LV+    +    +
Sbjct: 832 AAERAAINAPMQGTAADIIKLAMIAVDGWVQQQPEGNVRLLMQVHDELVFEVKESALEAV 891

Query: 581 NTTTRQLTREYT 592
             + + L  +  
Sbjct: 892 TASVKALMEQAA 903


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 172/564 (30%), Gaps = 89/564 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64
           D     +  Y E   V+  +F             HD       + +      LK  LE+ 
Sbjct: 353 DTETTSLN-YME-AKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQVLGKLKPLLEDE 410

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           +V  V  N  ++ +VL    N  I +       +L     N   +       AL      
Sbjct: 411 NVKKVGQNLKYDASVLA---NHGIALQGIAFDTMLESYVVNSTANRHDMDTLALAHLGHT 467

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
               +E+  +  K  T   +                 Y   D  +T  + + L P     
Sbjct: 468 NISFEEIAGKGAKQLTFNQI----------QLDQAAPYAAEDADITLRLHQALWPQVEAV 517

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   +   G  +D  +    +  +  +  ++ +E   L  G   
Sbjct: 518 EGIKSLFENVELPLVPVLSKVERTGALIDATILGQQSAELAADLERIQREAWELA-GEEF 576

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L   LF + G+ +   T+T    T + VL       P    +   R       
Sbjct: 577 NLASPKQLGVILFEKLGIPVIKKTKTGAPSTAEEVLQELALDYPLPALLLEQR------- 629

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H   +Q +T   
Sbjct: 630 ------------------------GLAKLKSTYTDKLPTMINPHTGRVHTSYNQAVTATG 665

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              ++DP+   I         VR   IA EG ++V AD + IE R++A ++G++    AF
Sbjct: 666 RLSSTDPNLQNIPIKTEAGRRVRKAFIAPEGYRIVAADYSQIELRIMAHLSGDEGLTNAF 725

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A  F  +   VT +QR   K +   L Y   A     +A    +  N  
Sbjct: 726 NQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINFGLIYGMSAF---GLARQLHIGRNDA 782

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              + T    + +     +   ++    EH   +  +G           + ++       
Sbjct: 783 QRYIDT--YFDRYPGVARYMEDIRVFAKEHGYVETLMGRRL-----YLPEINASNGMRRQ 835

Query: 523 ELHQAFEQTIENGKAIIARKRRDV 546
              +        G A    K+  +
Sbjct: 836 AAERTAINAPMQGSAADIIKKAMI 859


>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
          Length = 605

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 105/621 (16%), Positives = 194/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+     V  N  ++R +L    N  I +       +L     N +       
Sbjct: 80  ELLKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMD 136

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 186

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++
Sbjct: 187 LKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKK 246

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 247 AHEIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 305

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P+  R H 
Sbjct: 306 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 334

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 335 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 394

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A
Sbjct: 395 SRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLA 451

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                   +A+ +     E +P                      
Sbjct: 452 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 473

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 474 ------GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPD 504

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++         +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 505 IKSSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 561

Query: 633 VCET-PDTDEFNASMLYHLMT 652
           V E   D  +  A  ++ LM 
Sbjct: 562 VFEVHKDDVDAVAKQIHQLME 582


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 114/691 (16%), Positives = 208/691 (30%), Gaps = 168/691 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEALENT 64
           D    G+        ++  +     H        H        +P+      L+ A  N 
Sbjct: 316 DTETTGLDP--RTAELVGISISLQAHEAFYIPVGHRYLGMPDQLPRETVLERLRPAFGNP 373

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQK 122
            +  V  N  F+  +L       + +    C  +L      P          A +  + K
Sbjct: 374 AIRKVGQNLKFDLQILAVA---GLEVQGSWCDTMLCSYLLNPSRGGHGLDALAQEHLNHK 430

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
           M    E+      G     +                 Y   D   T  + ++L P+  + 
Sbjct: 431 MISYDEV-----TGSGKNRIC-----FSEVEVEKATRYAAEDADATWLLHEKLLPMLKEQ 480

Query: 182 ---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   +   G  +D+A    L         +L++ +  L  G   +
Sbjct: 481 GLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGNGFGQRMQELEKRIIELAGG-PFN 539

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L+  LF   GL     T+     +T   VL+   +    A  +           
Sbjct: 540 LNSPKQLEEVLFERLGLQAGKKTKGKTGRSTDNEVLTGLAEEHEIAKLLL---------- 589

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                 + G ++               R  R H   +Q +T   
Sbjct: 590 ---------------------DYRGLTKLKSTYTDALAKLTD-RQGRVHTSYNQAVTATG 627

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA  G  ++ AD + IE RVLA ++ +     AF
Sbjct: 628 RLSSSDPNLQNIPIRTDEGRRIREAFIAPPGCVILAADYSQIELRVLAHLSQDPVFCDAF 687

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              ED++  T +  F + P  VT + R   K +   + Y  GA +    A   G+  N  
Sbjct: 688 SQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQGAFSL---AKQLGVARNVA 744

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +                                           ++++HS      +
Sbjct: 745 EKFIAA-----------------------------------------YKERHSGAIAFLD 763

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
               + ++T      I+ RK   +P+  +     NL       RS         R+ +N 
Sbjct: 764 SCIASAKET-GYVTTILGRK---LPIADITSSNGNL-------RSFA------ERNAINY 806

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                              +Q  + DI+ + M+   +A         +++ VHDE+V E 
Sbjct: 807 P------------------IQGSAADIIKQAMLGVDRAIRAEGLQSRLIMQVHDELVFEV 848

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +T+ E    ++   M+     A  +PLK +
Sbjct: 849 LETELEQMRELVNREMSQAV--ALKVPLKVD 877


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/643 (16%), Positives = 195/643 (30%), Gaps = 156/643 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  ++ +VL       I +       +LA    N +       
Sbjct: 407 EQLKPILEDDAQAKVGQNLKYDMSVLARY---GIEMKGIKHDTMLASYVFNSVGGKHDMD 463

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+         +++  +  K  T   +                 Y   D  VT  + 
Sbjct: 464 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELGEASPYAAEDADVTLRLH 513

Query: 173 KRL-------EPLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            RL       E L       E  L  +   I   G  +D  L    +Q + V   +L+Q+
Sbjct: 514 NRLMENIEQDEKLKTIYGEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQK 573

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+  LF + GL +   T +    T + VL       P    + 
Sbjct: 574 AYEIA-EQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLII 632

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P        R H 
Sbjct: 633 EYR-------------------------------GLAKLKSTYTDKLPKMINAETGRVHT 661

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A +
Sbjct: 662 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHL 721

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L+AF+ G+D++  T A    V    VT +QR   K +   L Y   A     +A
Sbjct: 722 SGDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIYGMSAF---GLA 778

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+      H + T                                         + +
Sbjct: 779 KQLGIPRGEAQHYMDT-----------------------------------------YFE 797

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +   +   A  +            +  V  +Y              GR L   +
Sbjct: 798 RYPGVMQYMEDTRSAASE------------QGFVETIY--------------GRRLHLPE 831

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
           +         +   + R+           +Q  + DI+ + M+               ++
Sbjct: 832 I--------QSRNGMRRKAAERA-AINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLL 882

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           + VHDE+V E  ++        +  LM S       +PL AE 
Sbjct: 883 MQVHDELVFEVEESALAEIESKVQELMESAAE--LEVPLVAEA 923


>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna
          Length = 605

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 105/621 (16%), Positives = 194/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+     V  N  ++R +L    N  I +       +L     N +       
Sbjct: 80  ELLKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMD 136

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 186

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++
Sbjct: 187 LKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKK 246

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 247 AHEIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 305

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P+  R H 
Sbjct: 306 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 334

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 335 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 394

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A
Sbjct: 395 SRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLA 451

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                   +A+ +     E +P                      
Sbjct: 452 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 473

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 474 ------GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPD 504

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++         +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 505 IKSSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 561

Query: 633 VCET-PDTDEFNASMLYHLMT 652
           V E   D  +  A  ++ LM 
Sbjct: 562 VFEVHKDDVDAVAKQIHQLME 582


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 113/674 (16%), Positives = 197/674 (29%), Gaps = 152/674 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALEN 63
           +D     +  Y     ++  +F  +          HD V  PQ L         +  LE+
Sbjct: 347 VDTETTSLD-YM-VAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILED 404

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
             V  V  N  ++ +VL    N  I +   +   +L     N + S     G A+K    
Sbjct: 405 DKVKKVGQNLKYDISVLA---NAGIKLQGVVFDTMLESYVFNSVASRHDMDGLAIKYLGH 461

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +++  +  K  T   +             +   Y   D  +T  + + L P   K
Sbjct: 462 KNIGFEDIAGKGAKQLTFNQI----------PLEVAAPYAAEDADITLRLHQHLWPRLEK 511

Query: 182 EQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E +L             +   I  +G  +D  L    +  +  +   L+++   +  G  
Sbjct: 512 EPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIA-GEK 570

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 571 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 626

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      S+         P     +  R H    Q     
Sbjct: 627 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 659

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA  G+K++ AD + IE R++A ++ +   LKA
Sbjct: 660 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKA 719

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F      VT +QR   K +   L Y   A     +A    +  N 
Sbjct: 720 FAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRNE 776

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +       R+M+E     A E  ++ T   R +    +   R +   
Sbjct: 777 AQTYIDT-----YFARYPGVLRYMEETRA-GAAELGYVSTLFGR-RLYLPEIRDRNAMRR 829

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +A       G A    K+  +                                   
Sbjct: 830 QGAERAAINAPMQGTAADIIKKAMI----------------------------------- 854

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
               Q  +  T G                   M          ++ VHDE+V E      
Sbjct: 855 -NIAQWIKTETQG----------------EIAM----------IMQVHDELVFEVDADKA 887

Query: 642 FNASM-LYHLMTSN 654
                 +  LM   
Sbjct: 888 ETLKQKVCELMAKA 901


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%)

Query: 15  DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62
           D    G+    + +   L    F             HD     PQ         LK  LE
Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120
           +     V  N  F++++L       I +       +L     + +         A +  +
Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K    +E+  +     T   +          A    G Y   D  VT ++   L P   
Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520

Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +           E  L  +   I   G  +D  +    ++ + +   +L+++   L    
Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  L+ +  L +   T     +T + VL+      P    +   R     
Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR----- 634

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                     G ++         P    P   R H    Q +T 
Sbjct: 635 --------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + DP+   I         +R   IA +G  ++ AD + IE R++A ++ +   L 
Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F     +VT +QR   K +   L Y   A     +A   G+   
Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                          +       R   +
Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +  +Q  E G                             GR L   D+ +     
Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633
           N   R+               +Q  + DI+   M+          +    +++ VHDE+V
Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 890 FEVHESVLQSAEQKIRELMEKSMQLA--VPLKVD 921


>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
 gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
          Length = 928

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 116/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF +  +     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQSIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ET-PDTDEFNASMLYHLMT 652
           E   D  +  A  ++ LM 
Sbjct: 887 EVHKDDVDAVAKQIHQLME 905


>gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3]
 gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 112/688 (16%), Positives = 199/688 (28%), Gaps = 168/688 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEAL- 61
           + ID ET S           Y E   ++  +F  +          HD V  P+ L +AL 
Sbjct: 339 IAIDTETTSLN---------YME-AELVGISFAVEAGKAAYLPLSHDYVDAPEQLDKALV 388

Query: 62  --------ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPS 107
                   EN  +  V  N  ++ ++             D  +  ++   V ++ N    
Sbjct: 389 FEKLTPLLENEAIKKVGQNLKYDISIFANAGIKLKGVQFDTMLESYVFNSVASKHNMDDL 448

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           ALK +G        K    +E+  +  K  T   +                 Y   D  +
Sbjct: 449 ALKYLG-------HKNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADI 491

Query: 168 TREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T  + + L P   K           E  L  +  TI  +G  +D  L    ++ +  +  
Sbjct: 492 TLRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGVLIDSMLLGQQSEELARKID 551

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272
            L  +   +  G   +    ++L+   F + G  +   T      T + VL       P 
Sbjct: 552 DLQTKAHEIA-GQPFNLASPKQLQELFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 610

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +  +R  A                               +         P     + 
Sbjct: 611 PKIILEHRSLA-------------------------------KLKSTYTDKLPLMVNAKS 639

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q         +S+P+   I         +R   IA EG+K++ AD + IE R
Sbjct: 640 GRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGRKILAADYSQIELR 699

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++ ++  L AF  G+D++  T A  F+V  ++VT DQR   K +   L Y   A  
Sbjct: 700 IMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAF- 758

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +A    +        + T    + +    N+    +    +        G       
Sbjct: 759 --GLAKQLDIPRAEAQRYIDT--YFKRYPGVLNYMEETRAIATDLGYVSTLFGRRL---- 810

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                   R +       +A       G A    K+  +                     
Sbjct: 811 -YLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI--------------------- 848

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
                             +     T G      I                      +++ 
Sbjct: 849 ---------------NVAKWIETETNG-----EIT---------------------MIMQ 867

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSN 654
           VHDE+V E       +  + +  LM + 
Sbjct: 868 VHDELVFEVDADKADSLQVKICELMAAA 895


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 115/642 (17%), Positives = 197/642 (30%), Gaps = 159/642 (24%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D   +P +P       LK   E++D   +A N+ ++   L    N D+ +       +LA
Sbjct: 389 DLTAEPQLPLAEVLAFLKPWFEDSDSPKIAQNAKYD---LHVMANHDVWVKGLFEDTMLA 445

Query: 101 RSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                          AL+  +    + +E+  +     T + +                +
Sbjct: 446 SYILEAHKPHGMDALALRWLNYNTIKYEEVAGKGASQITFDQV----------PIDTATK 495

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLN 208
           Y   D  VT  +   L+    K  EL  L +            +   G  +D       +
Sbjct: 496 YAAEDAEVTLRLAHALKAELDKVPELAKLYRDVELPFGQVLFEVERNGVLIDSDKLEAQS 555

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLS 264
             +  +   ++++   L  G   +    +++   LF + GL +   T     +T + VLS
Sbjct: 556 AEIADKLKLIEEQAFELAGGS-FNLNSPKQIGELLFDKLGLPVVKKTASGAPSTDEEVLS 614

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              +  P   ++  +R  A                               +         
Sbjct: 615 KLAEDYPLPAKLLEHRSLA-------------------------------KLKSTYTDKL 643

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379
           P     R  R H    Q +       ++DP+   I         VR   IA+ G  LV A
Sbjct: 644 PRMVNARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRVREAFIAAPGCVLVSA 703

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++G++  + AF  G D++  T +  F V   +VT D R   KV+   L
Sbjct: 704 DYSQIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINFGL 763

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y   A     +A   G+        +    A               +N    A ED F+
Sbjct: 764 IYGMSAF---GLAGNLGITREAAKLYIDRYFARYP------GVAKFMDNVRAQAKEDGFV 814

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T   R              LW                                      
Sbjct: 815 QTVFGR-------------RLW-------------------------------------- 823

Query: 560 LMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM---- 614
             LP  +S    R  G  R+ +N                     Q  S D++   M    
Sbjct: 824 --LPEIKSPNGPRRAGAERAAINAPM------------------QGTSADLIKMAMVELS 863

Query: 615 --MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTS 653
             + A K    +++ VHDE++ E P  + E     +  +MT 
Sbjct: 864 AWLKAEKLNSKMIMQVHDEVIFEVPKGELELIQKRVPEIMTQ 905


>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
 gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
          Length = 929

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 102/589 (17%), Positives = 192/589 (32%), Gaps = 90/589 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64
           D    G+        +I  +F             HD    P  L  A         LE+ 
Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPDQLDRATVLALLKPLLEDE 413

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
            +  +  N  F++ V++     DI +       +L     + +         A +    K
Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHK 470

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----RLEP- 177
               +E+  +     T   +          A    G Y   D  VT  + +    +L+P 
Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQTLWGKLQPH 520

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                   + +  L  +   I   G  +D A+    ++ +     +L+ +   L  G   
Sbjct: 521 ADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAELEIQAYELA-GEEF 579

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  L+ +  L +   T      T + VL+      P    +   R       
Sbjct: 580 NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLILEYR------- 632

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 633 ------------------------GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA +G  +V AD + IE R++A ++G++  L AF
Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDEGLLNAF 728

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T +  F +A  +VT +QR   K +   L Y   A    +      LN+   
Sbjct: 729 ANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 N   E +   +++    ++   EH        +  +  +      HSR +    
Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
              +A       G A    K+  + +  +++KD   + +++     LV+
Sbjct: 839 GAERAAINAPMQGTAADIIKKAMIAIDDWLQKDAPKVKMIMQVHDELVF 887


>gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
 gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
          Length = 917

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 112/595 (18%), Positives = 191/595 (32%), Gaps = 87/595 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           +  D ET + ID         A+   V+  +F   +         H             +
Sbjct: 338 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAV 387

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
            + LK  LE+     V  ++ ++  VL    +  I +       +L     +   +    
Sbjct: 388 LRALKPLLEDPQKLKVGQHAKYDINVLANA-STPIAMQGVAYDTMLESYVLDSTATRHDM 446

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169
              ALK         +++  +  K  T + +          A    G Y   D  VT   
Sbjct: 447 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 496

Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              ++++LE +          E  L  +   I   G  VD  L    ++ +  +   L++
Sbjct: 497 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 556

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +   L  G   +    ++L   L+ + GL +   T T       +   L   A Q F   
Sbjct: 557 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 612

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   +  +Q+   S+         P Q  PR  R H    
Sbjct: 613 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 649

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   IA +G KL+ AD + IE R++A +A +
Sbjct: 650 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPQGYKLLAADYSQIELRIMAHLAKD 709

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF    D++  T A  F V    V+ DQR   K +   L Y   A     +A   
Sbjct: 710 EGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 766

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +    A               E     A E  F+ T   R +    + HS
Sbjct: 767 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 819

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
           +   +     +        G A    KR  V +    ++   +  ++L     LV
Sbjct: 820 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLRESGLDARVILQVHDELV 874


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
          Length = 985

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 92/551 (16%), Positives = 182/551 (33%), Gaps = 76/551 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115
           LK  LEN ++  V  N  F+ T+        I +      T++L+ +            A
Sbjct: 464 LKPILENPNIGKVGQNLKFDMTIFAR---NGIELRGIEFDTMLLSYTLDSTGRHNMDDLA 520

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---- 171
            +    +    +++  +     T   +               GEY   D  VT ++    
Sbjct: 521 KRYLGHQTIGFEDIAGKGKNQLTFNQI----------PLEQAGEYAAEDADVTMKLQQVL 570

Query: 172 FKRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +++L+   S        E  L  +   +   G  +D       +  +    T L+ +   
Sbjct: 571 WEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTALEMQAHE 630

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF + GL +         +T + VL            +  +R
Sbjct: 631 LA-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPKVLVEHR 689

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P    P+  R H    
Sbjct: 690 -------------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYH 718

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +SDP+   I         +R   IA +G K++ AD + IE R++A ++ +
Sbjct: 719 QAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 778

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AF  G+D++ +T A  F +   QVT +QR   K +   L Y   +     ++   
Sbjct: 779 AGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIYGMSSF---GLSRQL 835

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +                +    +  E A    ++ T   R +    + +S
Sbjct: 836 GISRADAQRYMDLYFQRYP------GVQTFMHDIREKAKAQGYVETLFGR-RLYLPEINS 888

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             +       +        G A    KR  + L  + +D  ++ +++     LV+     
Sbjct: 889 SNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEITRDDPDIHMIMQVHDELVFEVRSE 948

Query: 576 NRSYLNTTTRQ 586
             ++ +   +Q
Sbjct: 949 KIAFFSDLIKQ 959


>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 923

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/594 (16%), Positives = 182/594 (30%), Gaps = 89/594 (14%)

Query: 33  FAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKA 82
            +F  ++         HD       + +      LK  LE+ +   +  N  ++ +V+  
Sbjct: 365 VSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDPNQAKIGQNLKYDASVIAR 424

Query: 83  CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                I +       +L     N +         AL+    K    +E+  +     T  
Sbjct: 425 Y---GIEMQGIKYDTMLESYVYNSVVGRHDMDSLALRYLEHKNISFEEIAGKGKGQLTFN 481

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLD 189
            +               G Y   D  +T  +   L P            S  E  L  + 
Sbjct: 482 QI----------DLEQAGPYAAEDADITLRLHNALYPKVSADEKLLHVFSDIEMPLVPVL 531

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  +D       +Q +     +L++    +      +    ++L+  LF + GL
Sbjct: 532 SRMERTGVLIDSMKLSAQSQEIAQRLDELEKRAFEIAD-QEFNLSSPKQLQAILFEKMGL 590

Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
            +       T +T + VL       P    +   R                         
Sbjct: 591 PVLKKTPSGTPSTNEEVLQELALDYPLPKLILEYR------------------------- 625

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                 G ++         P    P   R H    Q +T      +SDP+   I      
Sbjct: 626 ------GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDE 679

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA +G K++  D + IE R++A ++G++  L AF  G+D++  T A    + 
Sbjct: 680 GRRIRQAFIAPQGYKVLAIDYSQIELRIMAHLSGDKALLDAFCHGKDIHAATAAEILGLP 739

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             QV+ +QR   K +   L Y   A     +A    +        + T      +E    
Sbjct: 740 LDQVSSEQRRRAKAINFGLIYGMSAF---GLAKQLDMGRGEAQEYMNT-----YFERYPG 791

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--I 538
              +M E     A E  ++ T   R +       SR         +A       G A  I
Sbjct: 792 VLEYM-ETTRTVASEQGYVETLFGR-RLYLPDIKSRNGLRRKAAERAAINAPMQGTAADI 849

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           I R    V     +++   + L++     LV+    +    +    + L     
Sbjct: 850 IKRAMVLVDEWIGQQESGRVRLLMQVHDELVFEVQESEIESVAQEIKTLMESAA 903


>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 928

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P+  R H 
Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905


>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
 gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
          Length = 929

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/664 (17%), Positives = 195/664 (29%), Gaps = 157/664 (23%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEALENT 64
           D    GI   A+   ++  +F             H        + +      LK  LE+ 
Sbjct: 347 DTETTGID--AQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRDSVLLALKPLLEDP 404

Query: 65  DVTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
            +  V  ++ F+  +L  C         I +       +L     N   +       A K
Sbjct: 405 KLLKVGQHAKFDMNILANCAIGGDQANGITVRGVAFDTMLESYVLNSTATRHDMDSLAQK 464

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175
                    +++  +  K  T + +               G Y   D  VT  + + L  
Sbjct: 465 YLDHSTVSFQDIAGKGAKQLTFDQI----------PLEQAGPYAAEDADVTLRLHQVLFD 514

Query: 176 ---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                      L+  E  L  +   I  +G  VD  L    +  +  +   L++E   + 
Sbjct: 515 KLSAIPSLASVLTDIEMPLVPVLARIERQGALVDDKLLGVQSIELGDKMVALEREAFEIA 574

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G   +    ++L + L+ + GL +   T                +              
Sbjct: 575 -GEEFNLGSPKQLGSILYDKLGLPVLKKTAKGQPSTAEEVLAKLAEDDYPLP-------- 625

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                             R  +Q+   S+         P Q  PR  R H    Q +   
Sbjct: 626 ------------------RVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAST 667

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +SDP+   I         +R   IA  G KL+ AD + IE R++A ++ ++  L A
Sbjct: 668 GRLSSSDPNLQNIPVRTAEGRRIRQAFIAPPGYKLLAADYSQIELRIMAHLSRDEGLLNA 727

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F    D++  T A  F V    VT DQR   K +   L Y  GA   QK+    G++   
Sbjct: 728 FRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINFGLIYGMGA---QKLGKDIGVDTKQ 784

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +        +M     +                              
Sbjct: 785 AKAYIDT-----YFARYPGVREYMDRTRAQ------------------------------ 809

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               Q + +TI         +R  +P +   K         P  R+      G  R+ +N
Sbjct: 810 -AADQGYVETI-------FGRRLYLPEINSNK---------PQERA------GAERTAIN 846

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE 635
                                Q  + DI+ + M+              ++L VHDE+V E
Sbjct: 847 APM------------------QGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLE 888

Query: 636 TPDT 639
             + 
Sbjct: 889 VRED 892


>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
 gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
           exonuclease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 928

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P+  R H 
Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905


>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 929

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/589 (17%), Positives = 194/589 (32%), Gaps = 90/589 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D    G+        +I  +F             HD    P+ L         K  LE+ 
Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVLALFKPLLEDE 413

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
            +  +  N  F++ V++     DI +       +L     + +         A +  S K
Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHK 470

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----P- 177
               +E+  +     T   +          A    G Y   D  VT  + ++L     P 
Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQKLWGKLQPH 520

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                   + +  L  +   I   G  +D A+    ++ + +   +L+ +   L  G   
Sbjct: 521 ADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTIRLAELETQAYELA-GEEF 579

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  L+ +  L +   T      T + VL+      P    +           
Sbjct: 580 NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLILE--------- 630

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                 + G ++         P    P   R H    Q +T   
Sbjct: 631 ----------------------YRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA +G  +V AD + IE R++A ++G++  L AF
Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAF 728

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T +  F +A  +VT +QR   K +   L Y   A    +      LN+   
Sbjct: 729 ANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 N   E +   +++    ++   EH        +  +  +      HSR +    
Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
              +A       G A    K+  + +  +++KD   + +++     LV+
Sbjct: 839 GAERAAINAPMQGTAADIIKKAMIAIDDWLQKDTPKVKMIMQVHDELVF 887


>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 928

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905


>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
 gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
          Length = 938

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 126/705 (17%), Positives = 218/705 (30%), Gaps = 178/705 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMP-QVL 57
           + +D ET S   L               L        P     + +     +P +P + +
Sbjct: 358 IALDTETTSTDPLNGA------------LVGISLAVEPGTGYYLPVGHLTGEPQLPLESI 405

Query: 58  KEALE----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
           ++AL     +     V  N  ++   L+      +         +LA     P++  L  
Sbjct: 406 RDALAPFLGDPRKPKVGQNLKYDLLALRLA---GMEAQGLAFDTLLAEWLVDPASRALGL 462

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A +    +M   +ELI              R       +      Y   D  +T  +
Sbjct: 463 KEMAERYLGVQMTRIEELIG--------TGKNQRTMAQ--VSVAQVAPYAAADAEITLRL 512

Query: 172 FKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              LE               E  L  +   +   G  +DV     +   +     ++++E
Sbjct: 513 KPILEERMLKAGVTRLFQDVEMPLVPVLADMEWNGILLDVPFLQRMGVELSQRLAEIEKE 572

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-------RVLSSNKKLTPQAI 274
           + +L  G   +    ++L   LF E  L   D  + T          VL   +   P   
Sbjct: 573 IYAL-VGHPFNINSTQQLSRVLFEELRLEPPDRRKKTSAGLYSTSAEVLEELRGRHPVLD 631

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  NR                                 S+         P Q  PR  R
Sbjct: 632 LILENREL-------------------------------SKLKSTYVDALPQQVNPRTGR 660

Query: 335 SHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H   +Q  +      +SDP+   I     +   VR+  IA EG  L+  D + IE R++
Sbjct: 661 VHTRFNQTGSVTGRLASSDPNLQNIPTRTDLGRQVRNAFIADEGWVLLSVDYSQIELRIV 720

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A ++  L AF  G+D++  T A  + V    VT++ R   K +   L Y   A    
Sbjct: 721 AHVANDEAMLAAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMSAFGLS 780

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           + A  T                     +AENF +   E                      
Sbjct: 781 RSADLT-------------------LAEAENFVKAYFEQ--------------------- 800

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                  V    ++L +   +     + ++ R+R      Y    KN      P+  +L 
Sbjct: 801 ----FPGVKRFLDDLRRRAARE-GYVETLLGRRR------YFPNLKN------PANPAL- 842

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YD 623
                  R  +N                    +Q  + DI+   M+   +A         
Sbjct: 843 --KAREEREAINAP------------------IQGTAADIIKLAMIRLPEALRAAGSRAR 882

Query: 624 IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           ++L VHDE+V E P +     A ++ H+M +  ++   +PL  E 
Sbjct: 883 LLLQVHDELVLEVPREEMPGTAKLVQHVMET--AYPLQIPLTTEA 925


>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 929

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 101/589 (17%), Positives = 192/589 (32%), Gaps = 90/589 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64
           D    G+        +I  +F             HD    P+ L  A         LE+ 
Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAKVLALFKPLLEDE 413

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
            +  +  N  F++ V++     DI +       +L     + +         A +  + K
Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHK 470

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----P- 177
               +E+  +     T   +          A    G Y   D  VT  + ++L     P 
Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQKLWGKLQPH 520

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                   + +  L  +   I   G  +D A+    ++ +     +L+ +   L  G   
Sbjct: 521 ADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAELETQAYELA-GEEF 579

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  L+ +  L +   T      T + VL+      P    +           
Sbjct: 580 NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLILE--------- 630

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                 + G ++         P    P   R H    Q +T   
Sbjct: 631 ----------------------YRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA +G  +V AD + IE R++A ++G++  L AF
Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAF 728

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T +  F  A  +VT +QR   K +   L Y   A    +      LN+   
Sbjct: 729 ANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 N   E +   +++    ++   EH        +  +  +      HSR +    
Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
              +A       G A    K+  + +  +++KD   + +++     LV+
Sbjct: 839 GAERAAINAPMQGTAADIIKKAMIAIDDWLQKDAPQVKMIMQVHDELVF 887


>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 928

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905


>gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 932

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 207/697 (29%), Gaps = 178/697 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59
           D    G+   + ++  + FA                D P +L   W           LK 
Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQ-------LKP 410

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
            LE+     V  N  F++++L       I +       +L     + +         A +
Sbjct: 411 LLEDDKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + K    +E+  +     T   +          A    G Y   D  VT ++   L P
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517

Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              +           E  L  +   I   G  +D  +    ++ + +   +L+++   L 
Sbjct: 518 KLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  L+ +  L +   T     +T + VL+      P    +   R  
Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G ++         P    P   R H    Q 
Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      + DP+   I         +R   IA EG +++ AD + IE R++A ++ ++ 
Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKG 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F ++  +VT +QR   K +   L Y   A     +A    +
Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                                             +       R 
Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             +   + +  +Q  E G                             GR L   D+ +  
Sbjct: 799 PGVLEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 833

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630
              N T R+               +Q  + DI+   M+               +++ VHD
Sbjct: 834 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHD 886

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           E+V E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 887 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921


>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDDKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P+  R H 
Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  +  ++ LM 
Sbjct: 885 VFEVHKGDLDAVSKRIHQLME 905


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 932

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 207/697 (29%), Gaps = 178/697 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59
           D    G+   + ++  + FA                D P +L   W           LK 
Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQ-------LKP 410

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
            LE+     V  N  F++++L       I +       +L     + +         A +
Sbjct: 411 LLEDDKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + K    +E+  +     T   +          A    G Y   D  VT ++   L P
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517

Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              +           E  L  +   I   G  +D  +    ++ + +   +L+++   L 
Sbjct: 518 KLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  L+ +  L +   T     +T + VL+      P    +   R  
Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G ++         P    P   R H    Q 
Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      + DP+   I         +R   IA EG +++ AD + IE R++A ++ ++ 
Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKG 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F ++  +VT +QR   K +   L Y   A     +A    +
Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                                             +       R 
Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             +   + +  +Q  E G                             GR L   D+ +  
Sbjct: 799 PGVLEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 833

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630
              N T R+               +Q  + DI+   M+               +++ VHD
Sbjct: 834 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHD 886

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           E+V E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 887 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/640 (15%), Positives = 190/640 (29%), Gaps = 156/640 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  F++++L       I +       +L     N +         
Sbjct: 408 LKPLLEDDKALKVGQNLKFDQSMLARY---GIELRGIAFDTMLESYVLNSVAGRHDMDSL 464

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +  + K    +E+  +     T   +          A    G Y   D  VT ++   
Sbjct: 465 AERYLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYASEDADVTLQLHLV 514

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   I   G  +D  +    ++ + +   +L+++  
Sbjct: 515 LWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAH 574

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L+  L+ +  L +   T     +T + VL+      P    +   
Sbjct: 575 ELA-EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEY 633

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P   R H   
Sbjct: 634 R-------------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSY 662

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      + DP+   I         +R   IA +G +++ AD + IE R++A ++ 
Sbjct: 663 HQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPQGYRIMAADYSQIELRIMAHLSQ 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +   +VT +QR   K +   L Y   A     +A  
Sbjct: 723 DEGLLTAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIYGMSAF---GLARQ 779

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                                                  +      
Sbjct: 780 LNIPRGEAQ--------------------------------------------RYMDLYF 795

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R   +   + +  +Q  + G                             GR L   D+ 
Sbjct: 796 ERYPGVLEYMERTRKQAADQGYVTTLD-----------------------GRRLYLPDIH 832

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627
           +     N   R+               +Q  + DI+   M+               +++ 
Sbjct: 833 S----RNANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQ 883

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 884 VHDELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 190/617 (30%), Gaps = 85/617 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEA---------LENT 64
           D     +  Y E   ++  +F  +          HD +  P  L EA         LE+ 
Sbjct: 344 DTETTSLD-YME-ARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLTEAVVLGKLKPLLEDP 401

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N  ++R VL    N DI +       +L     N   S       A +    +
Sbjct: 402 TRLKVGQNLKYDRNVL---LNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLGVE 458

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----RLEPL 178
               +++  +  K  T   +                 Y   D  +T  + +    +LE +
Sbjct: 459 TTSFEDIAGKGVKQLTFNQI----------ELEQAAPYAAEDADITLRLHQTLWGQLEAV 508

Query: 179 S-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   +   G  +D  L H  +Q +++   +L+++   L  G   
Sbjct: 509 PGLCQVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELERQAHELA-GQEF 567

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L   LF + GL +   T                +  ++    M          
Sbjct: 568 NLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYELPRLLM---------- 617

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                            +    ++         P    P+  R H    Q +       +
Sbjct: 618 -----------------EHRTLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAATGRLSS 660

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I         +R   I S G KLV AD + IE R++A ++G++  L AF  G+
Sbjct: 661 SDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGK 720

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  F VA   VT D R   K +   L Y   A     +A   G+        +
Sbjct: 721 DIHKATAAEVFGVALDAVTTDMRRSAKAINFGLIYGMSAF---GLAKQLGIGRAEAQKYM 777

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                 E +     +    ++        +   G              SR + L     +
Sbjct: 778 D--LYFERYPGVLEYMERTRQQAEAQGYVETLFGRRL-----YLPDIKSRNAGLRKGAER 830

Query: 527 AFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNT 582
           A       G A  II R   +V       +  ++ +++     LV+  R+          
Sbjct: 831 AAINAPMQGTAADIIKRAMINVDGWIRGIEDESIRMLMQVHDELVFEIREEKLEEYTAII 890

Query: 583 TTRQLTREYTYGGKLTE 599
             +       +   L E
Sbjct: 891 KEKMSAAAELHVPLLVE 907


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 120/652 (18%), Positives = 205/652 (31%), Gaps = 164/652 (25%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
             + + L   L + +  + AH+  ++  VL+       P  R     ++A      +AL 
Sbjct: 379 DEVREALSPLLADPNTVVYAHHGKYDALVLERA---GYPRPRIAFDTMIAAYLLGENALD 435

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169
               A      +M E   LI              RN+        +  G+Y   DV  T 
Sbjct: 436 LKSLAFNRLGMEMTEITTLI-----------GRGRNQLTMDLTDVQAAGDYACADVEATY 484

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            + + L+P              E  L  +   +   G  VDV L   L++ +  +  +L+
Sbjct: 485 RLVEVLQPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELE 544

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQV 276
           +E+  L      +     +L T LF E GL     T+T     Q VL + +   P    +
Sbjct: 545 REIYGLAK-HEFNINSTRQLATVLFDELGLPAGRRTKTGYSVSQEVLENLRHAHPIVDCI 603

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R                                  +         P Q  P   R H
Sbjct: 604 LEYRQLL-------------------------------KLKSTYVDALPEQVNPETGRIH 632

Query: 337 EELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS---------EGKKLVVADLA 382
              +Q I       ++DP+   I     +   VR   IA          E   L+ AD +
Sbjct: 633 TSFNQTIAATGRLSSTDPNLQNIPVRTELGRSVRRAFIADNRPGYRPFDEEAVLLSADYS 692

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G++  + AF  G+D++  T A  F V   QVT D R + K +   + Y 
Sbjct: 693 QIELRLMAHLSGDERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMYG 752

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             A     +A  TG++       +                                    
Sbjct: 753 MQAY---GLARDTGMSRQDAQRFID----------------------------------- 774

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561
                  +  +   V      L +   Q ++ G    +  +RR  P +    D +N+   
Sbjct: 775 ------RYMARLPGVRAF---LERTKRQALQQGYVTSMFGRRRYTPDI----DSSNVNRR 821

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-- 619
           L +            R  +N                     Q  + DI+   M+      
Sbjct: 822 LAA-----------ERMAINMPL------------------QGSAADIMKIAMIRVHDEM 852

Query: 620 ----AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                   ++L VHDE++ E P ++    + L   +M    +    +PL  E
Sbjct: 853 RRRGLRSRMLLQVHDELLFEVPRSELRTMADLAVDVMEKVVT--LNVPLVVE 902


>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 928

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 198/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                   +A+ +     E +P                      
Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905


>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 928

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 198/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                   +A+ +     E +P                      
Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905


>gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2]
          Length = 913

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/595 (18%), Positives = 190/595 (31%), Gaps = 87/595 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56
           +  D ET + ID         A+   V+  +F   +         H        + +   
Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
              LK  LE+     V  ++ ++  VL    +  I +       +L     +   +    
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169
              ALK         +++  +  K  T + +          A    G Y   D  VT   
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492

Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              ++++LE +          E  L  +   I   G  VD  L    ++ +  +   L++
Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +   L  G   +    ++L   L+ + GL +   T T       +   L   A Q F   
Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   +  +Q+   S+         P Q  PR  R H    
Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   +A +G KL+ AD + IE R++A +A +
Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF    D++  T A  F V    V+ DQR   K +   L Y   A     +A   
Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +    A               E     A E  F+ T   R +    + HS
Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
           +   +     +        G A    KR  V +    ++   +  ++L     LV
Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870


>gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1]
 gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I
 gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1]
          Length = 913

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/595 (18%), Positives = 190/595 (31%), Gaps = 87/595 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56
           +  D ET + ID         A+   V+  +F   +         H        + +   
Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
              LK  LE+     V  ++ ++  VL    +  I +       +L     +   +    
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169
              ALK         +++  +  K  T + +          A    G Y   D  VT   
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492

Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              ++++LE +          E  L  +   I   G  VD  L    ++ +  +   L++
Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +   L  G   +    ++L   L+ + GL +   T T       +   L   A Q F   
Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   +  +Q+   S+         P Q  PR  R H    
Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   +A +G KL+ AD + IE R++A +A +
Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF    D++  T A  F V    V+ DQR   K +   L Y   A     +A   
Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +    A               E     A E  F+ T   R +    + HS
Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
           +   +     +        G A    KR  V +    ++   +  ++L     LV
Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870


>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 928

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/538 (18%), Positives = 168/538 (31%), Gaps = 79/538 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  +  F+R VL+   N  I +       +L     N   S       
Sbjct: 386 LKPLLEDPTRLKVGQHLKFDRNVLR---NHGIHLQGIAFDTMLESYVLNSTASRHNMDDL 442

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A K  +   +  +++  +  K  T   +                 Y   D  +T  + + 
Sbjct: 443 AKKYLNYTTQTFEDVAGKGVKQLTFNQV----------ELEKAAFYAAEDADITLRLHQT 492

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P           L   E  L  +   +   G  +D  L    +Q ++V   +L+ +  
Sbjct: 493 LWPQVEKEPALKSLLLEMELPLAEVLSDMERTGALIDPFLLQNQSQQIEVRLAELESQAH 552

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L   LF +  L +   T      T + VL       P    +  +
Sbjct: 553 EIAGG-PFNLGSPKQLGEVLFEKLQLPVIKKTPKGAPSTAEEVLQELAYDYPLPKLLLEH 611

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+         P    P   R H   
Sbjct: 612 RSL-------------------------------SKLKSTYTDKLPLMIAPSTGRVHTSY 640

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I         +R   +A  G K+V AD + IE R++A ++ 
Sbjct: 641 HQAVTATGRLSSSDPNLQNIPVRTEEGRRIRQAFVADHGYKIVAADYSQIELRIMAHLSE 700

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  G+D++  T A   N+ P  VT +QR   K +   L Y   A     +A  
Sbjct: 701 DDGLLQAFAHGQDIHRATAAEIMNITPEAVTSEQRRNAKAINFGLIYGMSAF---GLAKQ 757

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        +      E +     +    +E   +    +   G              
Sbjct: 758 LGIPRGEAQRYMD--RYFERYPGVLTYMERTREQAEQAGYVETLFGRRL-----YLPDIK 810

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL--VYMKKDKNNLILMLPSGRSLVY 570
           ++   L     +A       G A    KR  + L       D   + +++     LV+
Sbjct: 811 AKNMGLRKAAERAAINAPMQGTAADIIKRAMIKLADWIKTCDNGTIRMVMQVHDELVF 868


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 119/692 (17%), Positives = 212/692 (30%), Gaps = 168/692 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64
           DL   G+        ++  +F             HD       + +      LK  LE+ 
Sbjct: 354 DLETDGLD--TLTANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVLAQLKPLLEDP 411

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           D + V  N  ++R VLK   N DI +       +L     N +         + +  + K
Sbjct: 412 DASKVGQNLKYDRGVLK---NYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHK 468

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +E+  +     T   +          A      Y   D  VT ++  ++ P   KE
Sbjct: 469 TITFEEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHLKMWPELEKE 518

Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                        L  +   +   G  +D A+    ++ +     +L+ +   L  G   
Sbjct: 519 AGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAELELKAHELA-GEPF 577

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF + G+     T     +T + VL+      P    +  +R       
Sbjct: 578 NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEHR------- 630

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G S+         P    P   R H    Q +T   
Sbjct: 631 ------------------------GLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 666

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              ++DP+   I         +R   +A +G ++V AD + IE R++A ++ ++  L AF
Sbjct: 667 RLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAF 726

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             GED++  T +  F V  ++VT +QR   K +   L Y  G  AF       GL+    
Sbjct: 727 SQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIY--GMSAF-------GLSRQ-- 775

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                               +       KK       R   +  
Sbjct: 776 ------------------------------------LNIGAGEAKKYMDLYFERYPGVLR 799

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            +    +    NG                        +    GR L   D+ ++    N 
Sbjct: 800 YMENTRQLAASNG-----------------------YVETLDGRRLWLPDIKSS----NA 832

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635
             R+               +Q  + DI+   M+               +++ VHDE+V E
Sbjct: 833 IRRKAAERAA-----INAPMQGTAADIIKRAMIAVDDWLQKQTDDAVRMIMQVHDELVFE 887

Query: 636 T-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
              +  +  +  +  LM  +   A  +PL  E
Sbjct: 888 IKAEAVDEASKQIRALMEGSM--ALDVPLLVE 917


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 114/682 (16%), Positives = 211/682 (30%), Gaps = 168/682 (24%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFE 76
           D  ++  +F  ++         HD            +   LK  LE++++  V  +  ++
Sbjct: 366 DAELVGVSFCIEEGEAAYVPVAHDYPDAPTQLSREFVLDALKPILESSNIIKVGQHIKYD 425

Query: 77  RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
           + VL    N DI ++      +L     N           AL     K    +++  +  
Sbjct: 426 KNVLA---NYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEDIAGKGA 482

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEPLSS-------KEQ 183
           K  T   +          A    G Y   D  +T      I+ +L+ +          E 
Sbjct: 483 KQLTFNQI----------ALEEAGPYAAEDADITLRLHNTIWAKLKEIPELKNLLIDVEV 532

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  +D       +Q +     +L++E+     G   +    ++L+  L
Sbjct: 533 PLACVLSRMEQEGVLIDSQRLSQQSQDLAARIAELEKEVHEEA-GEPFNLGSTKQLQHIL 591

Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           F +  L +   T      T + VL       P   ++                       
Sbjct: 592 FEKMSLPIIKKTPKGAPSTSEDVLQELALEYPLPKKI----------------------- 628

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   +++ G ++         P     R  R H    Q IT      ++DP+   I
Sbjct: 629 --------MEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLSSTDPNLQNI 680

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    VR   +  +G K V AD + IE R++A ++G++  L AF  G+D++  T +
Sbjct: 681 PIRNEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHGKDIHKATAS 740

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F V   +VT +QR   K +   L Y   A     +A    +  N     +        
Sbjct: 741 EVFGVPLDEVTTEQRRSAKAINFGLIYGMSAF---GLAKQLNIPRNEAQKYMD------L 791

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           + +         ++  E A                                + + +T+  
Sbjct: 792 YFERYPGVLEYMDSTRESAK------------------------------EKGYVETVFG 821

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTY 593
            +                       L LP  ++    R  G  R+ +N            
Sbjct: 822 RR-----------------------LYLPDIKASNGARRKGAERAAINAPM--------- 849

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT----KAGYD---IVLTVHDEIVCETPDTDEFN-AS 645
                    Q  + DI+   M+       K   D   +++ VHDE+V E  +    +   
Sbjct: 850 ---------QGTAADIIKMAMIKVDDWISKNAADDVTMMMQVHDELVFEIKEDKVDSYVK 900

Query: 646 MLYHLMTSNPSWAKGLPLKAEG 667
            +  LM S  +    +PL  E 
Sbjct: 901 TINTLMESAAT--LNVPLVVEA 920


>gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 913

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 111/595 (18%), Positives = 190/595 (31%), Gaps = 87/595 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56
           +  D ET + ID         A+   V+  +F   +         H        + +   
Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
              LK  LE+     V  ++ ++  VL    +  I +       +L     +   +    
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169
              ALK         +++  +  K  T + +          A    G Y   D  VT   
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492

Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              ++++LE +          E  L  +   I   G  VD  L    ++ +  +   L++
Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +   L  G   +    ++L   L+ + GL +   T T       +   L   A Q F   
Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   +  +Q+   S+         P Q  PR  R H    
Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   +A +G KL+ AD + IE R++A +A +
Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF    D++  T A  F V    V+ DQR   K +   L Y   A     +A   
Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +    A               E     A E  F+ T   R +    + HS
Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
           +   +     +        G A    KR  V +    ++   +  ++L     LV
Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870


>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
 gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
          Length = 929

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/589 (17%), Positives = 193/589 (32%), Gaps = 90/589 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64
           D    G+        +I  +F             HD    P+ L  A         LE+ 
Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAQVLALFKPLLEDE 413

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
            +  +  N  F++ V++     DI +       +L     + +         A +    K
Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHK 470

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----RLEP- 177
               +E+  +     T   +          A    G Y   D  VT  + +    +L+P 
Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQTLWGKLQPH 520

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                   + +  L  +   I   G  +D A+    ++ +      L+ +   L  G   
Sbjct: 521 ADLCQVFQAIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAGLETQAYELA-GEEF 579

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  L+ +  L +   T      T + VL+      P    +           
Sbjct: 580 NLASTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLILE--------- 630

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                 + G ++         P    P   R H    Q +T   
Sbjct: 631 ----------------------YRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IAS+G  +V AD + IE R++A ++G++  L AF
Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIASKGYSIVAADYSQIELRIMAHLSGDKGLLNAF 728

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T +  F +A  +VT +QR   K +   L Y   A    +      LN+   
Sbjct: 729 ANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 N   E +   +++    ++   EH        +  +  +      HSR +    
Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
              +A       G A    K+  + +  +++KD   + +++     LV+
Sbjct: 839 GAERAAINAPMQGTAADIIKKAMISIDDWLQKDTPLVKMIMQVHDELVF 887


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 119/692 (17%), Positives = 212/692 (30%), Gaps = 168/692 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64
           DL   G+        ++  +F             HD       + +      LK  LE+ 
Sbjct: 354 DLETDGLD--TLTANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVLAQLKPLLEDP 411

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           D + V  N  ++R VLK   N DI +       +L     N +         + +  + K
Sbjct: 412 DASKVGQNLKYDRGVLK---NYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHK 468

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +E+  +     T   +          A      Y   D  VT ++  ++ P   KE
Sbjct: 469 TITFEEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHLKMWPELEKE 518

Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                        L  +   +   G  +D A+    ++ +     +L+ +   L  G   
Sbjct: 519 AGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAELELKAHELA-GEPF 577

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF + G+     T     +T + VL+      P    +  +R       
Sbjct: 578 NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEHR------- 630

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G S+         P    P   R H    Q +T   
Sbjct: 631 ------------------------GLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 666

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              ++DP+   I         +R   +A +G ++V AD + IE R++A ++ ++  L AF
Sbjct: 667 RLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAF 726

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             GED++  T +  F V  ++VT +QR   K +   L Y  G  AF       GL+    
Sbjct: 727 SQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIY--GMSAF-------GLSRQ-- 775

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                               +       KK       R   +  
Sbjct: 776 ------------------------------------LNIGAGEAKKYMDLYFERYPGVLR 799

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            +    +    NG                        +    GR L   D+ ++    N 
Sbjct: 800 YMENTRQLAASNG-----------------------YVETLDGRRLWLPDIKSS----NA 832

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635
             R+               +Q  + DI+   M+               +++ VHDE+V E
Sbjct: 833 IRRKAAERAA-----INAPMQGTAADIIKRAMIALDDWLQKQTDDAVRMIMQVHDELVFE 887

Query: 636 T-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
              +  +  +  +  LM  +   A  +PL  E
Sbjct: 888 IKAEAVDEASKQIRALMEGSM--ALDVPLLVE 917


>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 929

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 103/589 (17%), Positives = 193/589 (32%), Gaps = 90/589 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D    G+        +I  +F             HD    P+ L         K  LE+ 
Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVLALFKPLLEDE 413

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
            +  +  N  F++ V++     DI +       +L     + +         A +  S K
Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHK 470

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PL 178
               +E+  +     T   +          A    G Y   D  VT  + ++L     P 
Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQKLWGKLQPH 520

Query: 179 SS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +         +  L  +   I   G  +D A+    ++ + +   +L+ +   L  G   
Sbjct: 521 TDLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKRLTIRLAELETQAYELA-GEEF 579

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  L+ +  L +   T      T + VL+      P    +   R       
Sbjct: 580 NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALGYPLPKLILEYR------- 632

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 633 ------------------------GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA +G  +V AD + IE R++A ++G++  L AF
Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYSIVAADYSQIELRIMAHLSGDKGLLNAF 728

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T +  F  A  +VT +QR   K +   L Y   A    +      LN+   
Sbjct: 729 ANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 N   E +   +++    ++   EH        +  +  +      HSR +    
Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
              +A       G A    K+  + +  +++KD   + +++     LV+
Sbjct: 839 GAERAAINAPMQGTAADIIKKAMIAIDDWLRKDTPKVKMIMQVHDELVF 887


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/640 (18%), Positives = 202/640 (31%), Gaps = 148/640 (23%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            + LK  LE+  +  +  N  ++  VLK    +++       TL+L+              
Sbjct: 515  ERLKPLLEDPSILKIGQNVKYDWIVLKQH-GVEMRPLD--DTLLLSYVLDA--------- 562

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN---HREAWRLFGEYCKGDVTVTREI 171
               L+   M+   E      K      +    +      R A     EY   D  VT  +
Sbjct: 563  --GLTDHGMDVLSE-KHLGHKPIPFSAVAGSGRTFIGFARVAIDKATEYAAEDADVTLRL 619

Query: 172  FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ L+P    E          + +  +   +  RG  +D  L   L+     +  + + E
Sbjct: 620  WRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLGRLSSDFAQDMARYEAE 679

Query: 222  LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQV 276
            +  L  G   +    ++L   LF + GL     T T    T   VL    +     A ++
Sbjct: 680  IYELA-GEKFNLGSPKQLGDILFGKLGLPGAKKTATGAWSTAAGVLEDLAEQGVDLAARI 738

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             + R  A                               +         P    P   R H
Sbjct: 739  LDWRQLA-------------------------------KLKSTYTDALPNYINPSSGRVH 767

Query: 337  EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                   T      +S+P+   I         +R   IA  G+KLV AD + IE R+LA 
Sbjct: 768  TSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRRAFIAPPGRKLVSADYSQIELRLLAH 827

Query: 392  MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +A  +    AF    D++  T +  F V    +  + R   K +   + Y   A     +
Sbjct: 828  IADIKSLKNAFAENLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAF---GL 884

Query: 452  ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
            A+   +     A  +K                                            
Sbjct: 885  ANQLAIPREEAAAYIK-------------------------------------------- 900

Query: 512  QKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +   R   +   +    ++  ENG    I  ++   P +             PS R+L  
Sbjct: 901  KYFERFPGIRAYMDDTKKKARENGYVETIFGRKCHYPRIKASN---------PSERAL-- 949

Query: 571  RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                N R+ +N   +         G   + I +A+   I  E  + A K    ++L VHD
Sbjct: 950  ----NERAAINAPIQ---------GSAADIIRRAM---IHMEAALAAEKLSAQMLLQVHD 993

Query: 631  EIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            E++ E PD + E   +++  +M   P  A    +PL+ + 
Sbjct: 994  ELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDA 1033


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/640 (17%), Positives = 200/640 (31%), Gaps = 156/640 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  F+ ++L      DI +       +L     + +         
Sbjct: 410 LKPLLEDEKALKVGQNLKFDMSLLARY---DITLRGIAFDTMLESYVLDSVGGRHDMDSL 466

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +  K  T   +          A      Y   D  VT ++   
Sbjct: 467 SDRYLGHKTVTFEEIAGKGKKQLTFNQI----------ALEQAAPYAAEDADVTLQLHLA 516

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +           E  L  +   I   G  +D ++  T +  +     +L+ +  
Sbjct: 517 MWPQLKESAELLTVFNQIEMPLLPVLSHIERTGVLIDQSILATHSIELTKRLAELEIQAH 576

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L+  L+ +  L +   T     +T + VL+      P    +   
Sbjct: 577 ELA-EEPFNLASTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPLPKVILEY 635

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P   R H   
Sbjct: 636 R-------------------------------GLAKLKTTYTDKLPLMINPVSGRVHTSY 664

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I         +R   IA EG ++V AD + IE R++A ++ 
Sbjct: 665 HQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQ 724

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  LKAF  GED++  T A  F +   +VT +QR   K +   L Y   A     +A  
Sbjct: 725 DEGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIYGMSAF---GLARQ 781

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                    A+ +     E +P                        
Sbjct: 782 LGIPRGE----------------AQRYMDLYFERYP------------------------ 801

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +  +Q    G                             GR L   DV 
Sbjct: 802 ----GVLEYMERTRQQAASQGYVSTLD-----------------------GRRLYLPDV- 833

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLT 627
                  +++  + R+           +Q  + DI+   M+          K    +++ 
Sbjct: 834 -------SSSNGMRRKAAERA-AINAPMQGTAADIIKRAMIEVDAWLQAQEKPLVRMIMQ 885

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  ++  E +   +  LM ++ + A  +PLK +
Sbjct: 886 VHDELVFEVHESVLEESNQRIRELMENSMALA--VPLKVD 923


>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
 gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
          Length = 938

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/561 (17%), Positives = 190/561 (33%), Gaps = 77/561 (13%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114
            LK  LE+     V  N  ++ +V+     +++   R   T++ +   N +         
Sbjct: 413 QLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 470

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+         +++  +     T   +            +   +Y   D  VT  + +R
Sbjct: 471 ALRFLQHSCISFEQIAGKGKNQLTFNQI----------DLQEAAQYAAEDADVTLRLHQR 520

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + PL  +           E  L  +   I   G  ++  L    +Q + +   +L+++  
Sbjct: 521 ISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMINDMLLSAQSQEIALRLDELEKKAY 580

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  L +       T +T + VL       P    +   
Sbjct: 581 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEY 639

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P   R H   
Sbjct: 640 R-------------------------------GLAKLKSTYTDKLPKMINPNTGRVHTSY 668

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   +A  G K++  D + IE R++A ++G
Sbjct: 669 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 728

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G+D++  T A    V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 729 DQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 785

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        +      + +E      ++M++     A E  ++ T   R +    +  
Sbjct: 786 LGIPRGEAQEYMD-----KYFERYPGVMQYMEDTRSR-AAELGYVETIFGR-RLHLPEIT 838

Query: 515 SRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           SR         +A       G A  II +    V     ++    + L++     LV+  
Sbjct: 839 SRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEV 898

Query: 573 VGNNRSYLNTTTRQLTREYTY 593
             ++ S + +  +QL      
Sbjct: 899 EESSLSEIESKVQQLMESAAE 919


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 117/692 (16%), Positives = 213/692 (30%), Gaps = 168/692 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64
           DL    +   + +  ++  +F             HD    P+ L  A         LE+ 
Sbjct: 354 DLETDALDTLSAN--IVGISFAIAPGEAAYLPVAHDYLDAPEQLDRAAVLAQLKPLLEDD 411

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N  ++R VLK   N DI +       +L     N +         A +  + K
Sbjct: 412 SAWKVGQNLKYDRGVLK---NYDIELAGIKFDTMLESYILNSVVGKHDMDSLAARWLNHK 468

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +E+  +     T   +          A      Y   D  VT ++  ++ P   KE
Sbjct: 469 TVTFQEIAGKGKNQLTFNQI----------ALEQASHYAAEDADVTLQLHLKMWPELEKE 518

Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                        L  +   I   G  +D A+    ++ +     +L+ +   L  G   
Sbjct: 519 AGPRKVFEQIEMPLLTVISRIERNGVLIDQAILAQHSKELTARLAELELKAHELA-GEPF 577

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF + G+     T     +T + VL+      P    +  +R       
Sbjct: 578 NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEHR------- 630

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G S+         P    P   R H    Q +T   
Sbjct: 631 ------------------------GLSKLKSTYTDKLPLMINPLSGRVHTSYHQAVTATG 666

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              ++DP+   I         +R   +A++G ++V AD + IE R++A ++ ++  L AF
Sbjct: 667 RLSSADPNLQNIPVRNDEGRRIRQAFVAAKGYRIVAADYSQIELRIMAHLSQDKGLLDAF 726

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             GED++  T +  F V   +V+ +QR   K +   L Y   A     ++    +     
Sbjct: 727 AQGEDIHRATASEVFGVPLDKVSAEQRRSAKAINFGLIYGMSAF---GLSRQLNIGAGE- 782

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                          A+ +     E +P               V +         +    
Sbjct: 783 ---------------AKKYMDLYFERYP--------------GVLRYMENTRQLAAS--- 810

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              + + +TIE                               GR L   D+ ++    N 
Sbjct: 811 ---KGYVETIE-------------------------------GRRLWLPDIKSS----NA 832

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635
             R+               +Q  + DI+   M+               +++ VHDE+V E
Sbjct: 833 IRRKAAERAA-----INAPMQGTAADIIKRAMIAVDAWLEQQNDNSVRMIMQVHDELVFE 887

Query: 636 T-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
              +  E  +  +  LM  +      +PL  E
Sbjct: 888 VKAEAVEAASQKIRALMEGSVQ--LDVPLLVE 917


>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 928

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P+  R H 
Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  +  ++ LM 
Sbjct: 885 VFEVHKDDLDAVSKRIHQLME 905


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/598 (16%), Positives = 197/598 (32%), Gaps = 98/598 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV---- 56
           +D ET S  +LT            ++  +F  +          HD       +P+     
Sbjct: 392 VDTETDSLDNLTAN----------LVGISFATEPGLAAYIPVAHDYLDAPDQLPRDRVLE 441

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            LK  LE+  +  V  N  F+R +L+   N  I +   +   +L     + +        
Sbjct: 442 LLKPLLEDESLVKVGQNLKFDRGILQ---NYGIELRGIVFDTMLESYILDSVSGRHDMDS 498

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            + +         +++  +     T   +               G Y   D  VT ++  
Sbjct: 499 LSSRWLKHTTITFEQIAGKGKNQLTFNQI----------DLEQAGRYAAEDADVTLQLHL 548

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           ++ P   +           E  L  +   I   G  +D A+ H  +Q + ++  +L+Q+ 
Sbjct: 549 KMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLAELEQKA 608

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +  G   +    ++L+T LF + G+     T     +T + VL       P    +  
Sbjct: 609 HEIA-GEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL- 666

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                         Q+ G ++         P    P+  R H  
Sbjct: 667 ------------------------------QYRGLAKLKSTYTDKLPQMINPKTGRVHTS 696

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++
Sbjct: 697 YHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 756

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y   A     ++ 
Sbjct: 757 RDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAF---GLSR 813

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +      E +     +    ++   E    +   G             
Sbjct: 814 QLNIPRKESQKYMD--LYFERYPGVLEYMERTRKQAKEQGYVETLDGRRL-----YLPDI 866

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           ++  +       +A       G A    KR  + +  +++K++  + +++     LV+
Sbjct: 867 NASNAARRAGAERAAINAPMQGTAADIIKRAMIAVDGWLEKEQPRVKMIMQVHDELVF 924


>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
 gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
          Length = 918

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 123/698 (17%), Positives = 212/698 (30%), Gaps = 174/698 (24%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----QV 56
           D ET S   LT            ++  +F             HD       +P       
Sbjct: 346 DTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAATLAR 395

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115
           +K  LEN  +  V  N  +++ VL    N  I ++     TL+ +              A
Sbjct: 396 IKPLLENPAIKKVGQNLKYDKHVLA---NHGIVLNGIAHDTLLQSYVLESHRTHGMDDLA 452

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           ++    +    +++  +  K  +   +          A     EY   D  VT ++ + L
Sbjct: 453 MRHLGVQTITYEQVAGKGAKQVSFSQV----------ALEQASEYAAEDADVTLQLHENL 502

Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P  ++           E  +  +  TI   G  +D  + +  +  +  +   L+Q+   
Sbjct: 503 YPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALEQQAYE 562

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF + G+         T +T + VL       P    +    
Sbjct: 563 LA-GQPFNLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLPKVLLE-- 619

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                        + G ++         P    P   R H    
Sbjct: 620 -----------------------------YRGLAKLKSTYTDKLPRMINPTTGRVHTSYS 650

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   +A  G  +V AD + IE R++A ++ +
Sbjct: 651 QAVAVTGRLSSSDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  GED++  T A  F V    V+ +QR   KV+   L Y   A     +A   
Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAF---GLAQNL 767

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+      + ++               R   +N  E A                  +   
Sbjct: 768 GIERQAAQNYIERYFTRYP------GVRDYMQNTRERA------------------KAQG 803

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V   +                    +R  VP +             P+G     R  G 
Sbjct: 804 YVETFF-------------------GRRLWVPEINS-----------PNGM----RRAGA 829

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
            R+ +N                     Q  + D++   M+         K    +++ VH
Sbjct: 830 ERAAINAPM------------------QGTAADLIKLAMIAVQGWLESEKLATKLIMQVH 871

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E PD +       L  LM         +PL AE
Sbjct: 872 DELVLEVPDNELALVKEKLPQLMQDVAK--LDVPLLAE 907


>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 928

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 196/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P+  R H 
Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D    A  ++ LM 
Sbjct: 885 VFEVHKDDLNAVAKRIHQLME 905


>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
 gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
          Length = 923

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/612 (16%), Positives = 189/612 (30%), Gaps = 91/612 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D    G+  Y     V+  +F  ++         HD            + + LK  LE+ 
Sbjct: 349 DTETDGLD-YM-TANVVGVSFAIEEGKAAYVPLAHDYLDAPAQLDRDWVLEQLKPLLEDP 406

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               +  N  F+ +++       I +   +   +L     N +         AL+    K
Sbjct: 407 KQAKIGQNLKFDASIVARY---GIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHK 463

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
               +E+  +  K  T   +               G Y   D  +T  +   L P     
Sbjct: 464 NISFEEVAGKGKKQLTFNQI----------DLEQAGPYAAEDADITLRLHNTLYPKVEAD 513

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                   + E  L  +   +   G  VD  L    +  + V   +++++   +      
Sbjct: 514 DKLKHVFENIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAVRLDEIEKKAFEIA-EQEF 572

Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF + GL +       T +T + VL       P    +   R       
Sbjct: 573 NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLLLEYR------- 625

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 626 ------------------------GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATG 661

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   +A  G K++  D + IE R++A ++G++  L AF
Sbjct: 662 RLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAF 721

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T A   ++    V+ +QR   K +   L Y   A     +A    +  N  
Sbjct: 722 RHGKDIHAATAAEILSLDIENVSSEQRRRAKAINFGLIYGMSAF---GLAKQLDMGRNEA 778

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
            + +  N   E +     +    +    E    +   G              SR      
Sbjct: 779 QNYM--NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRL-----YLPDIKSRNGLRRK 831

Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +A       G A  II      V     ++ + ++ L++     LV+    +    +
Sbjct: 832 AAERAAINAPMQGTAADIIKLAMIAVDDWVQQQPEGDVRLLMQVHDELVFEVKESALEAV 891

Query: 581 NTTTRQLTREYT 592
             + + L  +  
Sbjct: 892 TASVKALMEQAA 903


>gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1]
          Length = 913

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 111/595 (18%), Positives = 189/595 (31%), Gaps = 87/595 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56
           +  D ET + ID         A+   V+  +F   +         H        + +   
Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
              LK  LE+     V  ++ ++  VL    +  I +       +L     +   +    
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169
              ALK         +++  +  K  T + +          A    G Y   D  VT   
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492

Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              ++++LE +          E  L  +   I   G  VD  L    ++ +  +   L++
Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +   L  G   +    ++L   L+ + GL +   T T       +   L   A Q F   
Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   +  +Q+   S+         P Q  PR  R H    
Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   +A +G KL+ AD + IE R++A +A +
Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF    D++  T A  F V    V+ DQR   K +   L Y   A     +A   
Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +    A               E     A E  F+ T   R +    + HS
Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
           +   +     +        G A    KR  V +     +   +  ++L     LV
Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLLESGLDARVILQVHDELV 870


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 155/686 (22%), Positives = 239/686 (34%), Gaps = 132/686 (19%)

Query: 7   DFETRSPI--DLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET      D+   G+  Y  D      L +F             H    P       E
Sbjct: 26  DTETYYSKGYDIRSLGVDAYVADPRFDCYLASFWGPHGNF----VGHPSECPWE-----E 76

Query: 63  NTDVTIVAHNSYFERTVLKAC--FNL---DIPIHRWICTLVLARSNGLPSALKAVGEALK 117
             D   ++HN+ F+R V        +    I    W  +  LA     P  L    E L 
Sbjct: 77  FNDCVWISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPRNLAGAAEKL- 135

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-KRLE 176
           L  +  +  ++ +                   H +A     +Y   D  +  E++    +
Sbjct: 136 LGEKPNKAIRDAMK----------GIQGGLLCHDKA---VLDYALDDARLACELWISHCD 182

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
               KE+ L  L     + G  +D        + +   R   D E  +L +         
Sbjct: 183 KWPKKERLLSQLTIEQGEYGVHLDQKRIREGIETLTQVR---DDEATNLPWFPRLKPSSP 239

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRV---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           +        +  + + + T     +    +    +  P    +   R   +   +  L T
Sbjct: 240 KAFAE-ACQQARIPIPNSTSEDDPQTQEWIERYGERYPWLKHMSEWR--KANRMLKVLET 296

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGC-VFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           +      DG L   L++ GA  TGRW+G      QN  R +                   
Sbjct: 297 MQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREAYYG---------------V 341

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           DP          R C++A  G KL++ADL+ IE RVLAW+AG++        G  +Y   
Sbjct: 342 DP----------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAH 391

Query: 413 YARSFNVAPAQVTKDQRAI---GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              S N     + K+   +    K   + LGY  G K FQ +A   GL ++         
Sbjct: 392 AETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMSI-------- 443

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                             +R    +R+ + R+  LW  +  +  
Sbjct: 444 -------------------------------GEAKRTVDDFRKANPRIVSLWQAVEDSMR 472

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
             I                       +   + LPS RS+ Y DV        TT R   R
Sbjct: 473 YHI----------------------GSTFFMYLPSLRSIRYFDVQEEEGLTATTERGGRR 510

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            + YGGKLTEN+VQA +RD+ AEG++   KAG  I+ TVHDE++CE P+  +     +  
Sbjct: 511 LHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVETVTD 570

Query: 650 LMTSNPSWAKGLPLKAEGYESKRYRK 675
           L+   P W  GLP+ AEG E+  Y K
Sbjct: 571 LLAQTPDWIPGLPVAAEGIETSCYTK 596


>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
 gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
          Length = 928

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/679 (17%), Positives = 218/679 (32%), Gaps = 161/679 (23%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L               
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLI-------------- 765

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A  +         ++A+ +     E +P               V +   +  
Sbjct: 766 YGMSAFGLARQLNIPR-----KEAQKYMDLYFERYP--------------GVLEYMERTR 806

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           ++         Q++ +T++                               GR L   D+ 
Sbjct: 807 AQAK------EQSYVETLD-------------------------------GRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +  + A +    +++ VHDE+V 
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D +  A  ++ LM 
Sbjct: 887 EVHRDDVDAVAKQIHQLME 905


>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
 gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
          Length = 896

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 212/682 (31%), Gaps = 156/682 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65
           ID     +        ++  +   ++         H     Q++KE         LEN  
Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKM 123
           +  +  N  ++ +VLK   N  I +       +L        A        ALK    K 
Sbjct: 383 IGKIGQNIKYDYSVLK---NYGITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKT 439

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181
              +++  +  K    + +               G Y   D  +T  +  +L P+  K  
Sbjct: 440 ISYEDVAGKGAKQLRFDQIPV----------EKAGIYAAEDADITLRLHHKLYPMLDKPL 489

Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G  +D  +       +  +   L+QE   L  G   +  
Sbjct: 490 RNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAIQLA-GKAFNLN 548

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             ++L+  LF E  L +   T T       S  +        F+ R+ A           
Sbjct: 549 SPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA----------- 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                        L++   S+         P +  P+  R H   +Q +       +SDP
Sbjct: 593 -----------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R+  IA EG  ++ AD + IE R++A ++ +   L+AF  G D++
Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +  F      V+K+QR   K +   L Y   A     +A   G+            
Sbjct: 702 AATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER---------- 748

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                 +DA+++       +P                            ++   + +  +
Sbjct: 749 ------QDAQHYIDTYFRRYP----------------------------KVLEYMERTRK 774

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q  + G       RR               L LP                    +R L R
Sbjct: 775 QAHQLGYVETLFGRR---------------LYLP-----------------EINSRNLMR 802

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDE 641
           +           +Q  + DI+ + M+               +++ VHDE+V E   +  E
Sbjct: 803 QKAAERTAINGPMQGTAADIIKKTMLAVSNWEHSQKNPSAKMIMQVHDELVFEVRKEAVE 862

Query: 642 FNASMLYHLMTSNPSWAKGLPL 663
              ++++ LM         +PL
Sbjct: 863 ECRAIIHKLMEQTVK--LSVPL 882


>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4]
 gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4]
          Length = 918

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 124/698 (17%), Positives = 212/698 (30%), Gaps = 174/698 (24%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----QV 56
           D ET S   LT            ++  +F             HD       +P       
Sbjct: 346 DTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAATLAR 395

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115
           +K  LEN  +  V  N  +++ VL    N  I ++     TL+ +              A
Sbjct: 396 IKPLLENPAIKKVGQNLKYDKHVLA---NHGIALNGIAHDTLLQSYVLESHRTHGMDDLA 452

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           ++    +    +++  +  K  +   +          A     EY   D  VT ++ + L
Sbjct: 453 MRHLGVQTITYEQVAGKGAKQVSFSQV----------ALEQASEYAAEDADVTLQLHENL 502

Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P  ++           E  +  +  TI   G  +D  + +  +  +  +   L+Q+   
Sbjct: 503 YPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALEQQAYE 562

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF + G+         T +T + VL       P    +   R
Sbjct: 563 LA-GQPFNLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLPKVLLEYR 621

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G ++         P    P   R H    
Sbjct: 622 -------------------------------GLAKLKSTYTDKLPRMINPTTGRVHTSYS 650

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   +A  G  +V AD + IE R++A ++ +
Sbjct: 651 QAVAVTGRLSSSDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  GED++  T A  F V    V+ +QR   KV+   L Y   A     +A   
Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAF---GLAQNL 767

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+      + ++               R   +N  E A                  +   
Sbjct: 768 GIERQAAQNYIERYFTRYP------GVRDYMQNTRERA------------------KAQG 803

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V   +                    +R  VP +             P+G     R  G 
Sbjct: 804 YVETFF-------------------GRRLWVPEINS-----------PNGM----RRAGA 829

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
            R+ +N                     Q  + D++   M+         K    +++ VH
Sbjct: 830 ERAAINAPM------------------QGTAADLIKLAMIAVQGWLESEKLATKLIMQVH 871

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E PD +       L  LM         +PL AE
Sbjct: 872 DELVLEVPDNELALVKEKLPQLMQDVAK--LDVPLLAE 907


>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 930

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/613 (16%), Positives = 195/613 (31%), Gaps = 101/613 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S  +++            ++  +F  +          HD       +P+      
Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLAL 406

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  V  V  N  ++R +L    N DI +       +L     + +         
Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +           E  L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y   A     +A  
Sbjct: 722 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573
           S          +A       G A    KR  + +  +++ +K  + +++     LV+   
Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVH 891

Query: 574 GNNRSYLNTTTRQ 586
            +    LN  +++
Sbjct: 892 KDE---LNAVSKK 901


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/697 (15%), Positives = 204/697 (29%), Gaps = 178/697 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59
           D    G+   + ++  + FA                D P +L   W           LK 
Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAT-------LKP 410

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
            LE+     V  N  F++++L       I +       +L     N +         A +
Sbjct: 411 LLEDEKALKVGQNLKFDQSMLARY---GIELRGIAFDTMLESYVLNSVAGRHDMDSLAER 467

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + K    +E+  +     T   +          A    G Y   D  VT ++   L P
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEEAGPYASEDADVTLQLHLVLWP 517

Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D  +    ++ + +   +L+++   L 
Sbjct: 518 KLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  L+ +  L +   T     +T + VL+      P    +   R  
Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G ++         P    P   R H    Q 
Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      + DP+   I         +R   IA +G +++ AD + IE R++A ++ ++ 
Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDEG 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F +   +VT +QR   K +   L Y   A     +A    +
Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLNI 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                                             +       R 
Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             +   + +  +Q  + G                             GR L   D+ +  
Sbjct: 799 PGVLEYMERTRKQAADQGYVTTLD-----------------------GRRLYLPDIHS-- 833

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630
              N   R+               +Q  + DI+   M+               +++ VHD
Sbjct: 834 --RNANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQESEPLVRVIMQVHD 886

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           E+V E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 887 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921


>gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/694 (15%), Positives = 200/694 (28%), Gaps = 172/694 (24%)

Query: 15  DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62
           D    G+    + +   L    F             HD     PQ         LK  LE
Sbjct: 176 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 231

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120
           +     V  N  F++++L       I +       +L     + +         A +  +
Sbjct: 232 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 288

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
            K    +E+  +     T   +          A    G Y   D  VT ++   L P   
Sbjct: 289 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 338

Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  L  +   I   G  +D  +    ++ + +   +L+++   L    
Sbjct: 339 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 397

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  L+ +  L +   T     +T + VL+      P    +         
Sbjct: 398 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILE------- 450

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                   + G ++         P    P   R H    Q +T 
Sbjct: 451 ------------------------YRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 486

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + DP+   I         +R   IA +G  ++ AD + IE R++A ++ +   L 
Sbjct: 487 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 546

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F     +VT +QR   K +   L Y   A     +A   G+   
Sbjct: 547 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 603

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                          +       R   +
Sbjct: 604 EAQ--------------------------------------------RYMDLYFERYPGV 619

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +  +Q  E G                             GR L   D+ +     
Sbjct: 620 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 652

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633
           N   R+               +Q  + DI+   M+          +    +++ VHDE+V
Sbjct: 653 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 707

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 708 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 739


>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 928

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P+  R H 
Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKSGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905


>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
 gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
          Length = 931

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD            + + LK  LE+     V  N  ++ +VL   
Sbjct: 374 SFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY 433

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         +++  +     T   
Sbjct: 434 ---GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 490

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL       E L       E  L  +  
Sbjct: 491 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLS 540

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D       +  +     +L+Q+   +      +    ++L+  LF + GL 
Sbjct: 541 RIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 599

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +   R                          
Sbjct: 600 VVKKTPSGTPSTNEEVLQELALDYPLPKLILEYR-------------------------- 633

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
                G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 634 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 689 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 749 DQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 800

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            ++M E+    A +  ++ T   R +    +  SR         +A       G A    
Sbjct: 801 MQYM-EDTRSAAADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 858

Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           K+  + +    +++ N  + L       LV+    ++ S + +  ++L      
Sbjct: 859 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 912


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 109/634 (17%), Positives = 204/634 (32%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LE+ DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTI---FANHGVQVEGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDIASQYAAEDADVTMKLHQV 540

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   K           E  L  +   I   G  +D       +  ++    +L+Q + 
Sbjct: 541 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P    P+  R H    Q +
Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINPKTGRVHTSYHQAV 693

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA++G K+V AD + IE R++A +A ++  
Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLANDEGM 753

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  ++                                          + Q++  V 
Sbjct: 811 RADAKKYME-----------------------------------------RYFQRYPAVQ 829

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++              K+  V  ++              GR L   ++ ++  
Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   KA        +++ VHDE+V
Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914

Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946


>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
 gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
          Length = 896

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 212/682 (31%), Gaps = 156/682 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65
           ID     +        ++  +   ++         H     Q++KE         LEN  
Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKM 123
           +  +  N  ++ +VLK   N  I +       +L        A        ALK    K 
Sbjct: 383 IGKIGQNIKYDYSVLK---NYGITLQGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKT 439

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181
              +++  +  K    + +               G Y   D  +T  +  +L P+  K  
Sbjct: 440 ISYEDVAGKGAKQLRFDQIPV----------EKAGIYAAEDADITLRLHHKLYPMLDKPL 489

Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G  +D  +       +  +   L+QE   L  G   +  
Sbjct: 490 RNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA-GKAFNLN 548

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             ++L+  LF E  L +   T T       S  +        F+ R+ A           
Sbjct: 549 SPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA----------- 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                        L++   S+         P +  P+  R H   +Q +       +SDP
Sbjct: 593 -----------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R+  IA EG  ++ AD + IE R++A ++ +   L+AF  G D++
Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +  F      V+K+QR   K +   L Y   A     +A   G+            
Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER---------- 748

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                 +DA+++       +P                            ++   + +  +
Sbjct: 749 ------QDAQHYIDTYFRRYP----------------------------KVLEYMERTRK 774

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q  + G       RR               L LP                    +R L R
Sbjct: 775 QAHQLGYVETLFGRR---------------LYLP-----------------EINSRNLMR 802

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDE 641
           +           +Q  + DI+ + M+               +++ VHDE+V E   +  E
Sbjct: 803 QKAAERTAINGPMQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVE 862

Query: 642 FNASMLYHLMTSNPSWAKGLPL 663
              ++++ LM         +PL
Sbjct: 863 ECHAIIHKLMEQTVK--LSVPL 882


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/642 (15%), Positives = 192/642 (29%), Gaps = 156/642 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
             LK  LE+     V  N  F++++L       I +       +L     + +       
Sbjct: 406 DTLKPLLEDEKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMD 462

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A +  + K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLH 512

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             L P   +           E  L  +   I   G  +D  +    ++ + +   +L+++
Sbjct: 513 LVLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTGVLIDQNILAAHSKELAIRLDELEKQ 572

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              L  G   +    ++L+  L+ +  L +   T     +T + VL+      P      
Sbjct: 573 AHELA-GEPFNLASPKQLQVILYEKQQLPILKKTPGGAASTNEEVLAELALDYPLPK--- 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                         +++ G ++         P    P   R H 
Sbjct: 629 ----------------------------VIIEYRGLAKLKSTYTDKLPLMINPVSGRVHT 660

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      + DP+   I         +R   IA +G +++ AD + IE R++A +
Sbjct: 661 SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHL 720

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A
Sbjct: 721 SQDKGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIYGMSAF---GLA 777

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                                                  +    
Sbjct: 778 RQLNIPRGEAQ--------------------------------------------RYMDL 793

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R   +   + +  +Q  + G                             GR L   D
Sbjct: 794 YFERYPGVLEYMERTRKQAADQGYVTTLD-----------------------GRRLYLPD 830

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIV 625
           + +     N   R+               +Q  + DI+   M+               ++
Sbjct: 831 INS----RNANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQESAPLVRVI 881

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E  +T   +A   +  LM  +   A  +PLK +
Sbjct: 882 MQVHDELVFEVHETVLESAEQKIRELMEQSMQLA--VPLKVD 921


>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044]
 gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 930

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/597 (16%), Positives = 189/597 (31%), Gaps = 98/597 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S  +++            ++  +F  +          HD       +P+      
Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLTL 406

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  V  V  N  ++R +L    N DI +       +L     + +         
Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +           E  L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y   A     +A  
Sbjct: 722 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           S          +A       G A    KR  + +  +++ +K  + +++     LV+
Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVF 888


>gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 884

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 359 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 415

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 416 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 465

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 466 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 525

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 526 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 584

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 585 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 613

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 614 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 673

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 674 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 730

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 731 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 752

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 753 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 783

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 784 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 840

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 841 VFEVHKDDLDAVAKRIHQLME 861


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 932

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 207/697 (29%), Gaps = 178/697 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59
           D    G+   + ++  + FA                D P +L   W           LK 
Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQ-------LKP 410

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
            LE+     V  N  F++++L       I +       +L     + +         A +
Sbjct: 411 LLEDDKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + K    +E+  +     T   +          A    G Y   D  VT ++   L P
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517

Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              +           E  L  +   I   G  +D  +    ++ + +   +L+++   L 
Sbjct: 518 KLQQSEGLKRVFQEIEIPLLPILSRIERTGVLIDQNILVAHSKELTIRLDELEKQAHELA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  L+ +  L +   T     +T + VL+      P    +   R  
Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G ++         P    P   R H    Q 
Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      + DP+   I         +R   IA EG +++ AD + IE R++A ++ ++ 
Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKG 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F ++  +VT +QR   K +   L Y   A     +A    +
Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                                             +       R 
Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             +   + +  +Q  E G                             GR L   D+ +  
Sbjct: 799 PGVLEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 833

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630
              N T R+               +Q  + DI+   M+               +++ VHD
Sbjct: 834 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHD 886

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           E+V E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 887 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 124/713 (17%), Positives = 231/713 (32%), Gaps = 169/713 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMPQVL 57
           +  + ID ET S            AE V  + F +G +   +            +  Q +
Sbjct: 384 LQPVAIDTETTSLNPFK-------AELVG-LGFCWGENLDDIAYIPLGHNSQGELKDQSI 435

Query: 58  KEALENTDVT-------------IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           ++ L   +V               V  N+ ++R +     +  IP+   +   +LA    
Sbjct: 436 RQQLPIQNVIQSLTPWLSSSYHPKVLQNAKYDRLI---FLHNGIPLEGVVMDTLLADYLS 492

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                         +   ++E  +           + L  + +            YC  D
Sbjct: 493 N-----------STNKHSLDEIAKR-EYGFTPINFKELVGKGETFKDVDIDTASIYCGMD 540

Query: 165 VTVTREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           V +TR++  R+              L   EQ L  +   +  RG C+D+     L++ ++
Sbjct: 541 VYLTRKLSFRIRSQLQTKGSELIQLLEKVEQPLEPILAEMEARGICIDIPYLKELSKELN 600

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNK 267
                L+++    + G   +    ++L   LF +  L  +   +T     T   VL   +
Sbjct: 601 QTLKGLEEQAYK-SAGFEFNLNSPKQLGEILFDKLALDKKKSRKTKTGWSTDANVLERLE 659

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    +  +R                                 S+         P  
Sbjct: 660 ADHPLVPLLVEHR-------------------------------TLSKLVSTYVDALPQL 688

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
                 R H + +Q +T      +S+P+   I      S  +R   +  E  KL+ AD +
Sbjct: 689 VEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLISADYS 748

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA ++GE+   +A++ G+D++  T      +    +  ++R +GK +   + Y 
Sbjct: 749 QIELRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKTINFGVIYG 806

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
            GA   Q+ A +TGLN +     +  N   E +    +F     E     A+   ++ T 
Sbjct: 807 MGA---QRFARSTGLNQSEAKDFL--NRFKERYPKVFSFL----ELQERLALSKGYVQTL 857

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R +                                          Y   DKN L  +L
Sbjct: 858 LGRRR------------------------------------------YFNFDKNGLGRLL 875

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGM----- 614
            S               +N   ++  R      +L       +Q  S DI+   M     
Sbjct: 876 GSDP-------------MNIDLKRARRAGMEAQQLRAAANAPIQGSSADIIKIAMVQLAT 922

Query: 615 -MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            +  +    +++L VHDE+V E  P   E   +++   M +    A  L + A
Sbjct: 923 KLKVSGVAANLLLQVHDELVLEVEPSVIEEVKNIVVSTMENAVHLAVPLVVHA 975


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 110/634 (17%), Positives = 204/634 (32%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDIASQYAAEDADVTMKLHQV 540

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   K           E  L  +   I   G  +D       +  ++    +L+Q + 
Sbjct: 541 LSPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P    P+  R H    Q +
Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINPKTGRVHTSYHQAV 693

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA++G K+V AD + IE R++A +A ++  
Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLANDEGM 753

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  ++                                          + Q++  V 
Sbjct: 811 RADAKKYME-----------------------------------------RYFQRYPAVQ 829

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++              K+  V  ++              GR L   ++ ++  
Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   KA        +++ VHDE+V
Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 915 FEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIAE 946


>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
 gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
          Length = 892

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 124/700 (17%), Positives = 210/700 (30%), Gaps = 175/700 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMPQ----- 55
           ID ET S   L          D  ++ +A     H                 +P+     
Sbjct: 318 IDLETTSLNPL----------DASIVGYAVSCLAHEAYYIPIGHRYLGAPEQLPEALVLE 367

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
           +L   L + D   +  N  ++  VL+      + +    C  +LA     PS  +     
Sbjct: 368 LLGPLLTDPDRKKIGQNLKYDYQVLQQS---GVELAGIWCDTMLAAYLVNPSRNSQGLDA 424

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    +M    E+                            G Y   D   T  + +
Sbjct: 425 LALEYLDHRMISYAEVA----------GTGKCELNFSEVDLDRAGPYSCEDADATYLLHE 474

Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L P          L   E  L  +   +   G  +DV L   L+     +  +L+ ++ 
Sbjct: 475 ILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELSTGFGRQLIELEAKIH 534

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFN 278
               G   +    ++L   LF   GL +   T+     +T    L    +    A     
Sbjct: 535 EHCGGS-FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVA----- 588

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                     R  LQ+   S+         P    P+  R H  
Sbjct: 589 --------------------------RLLLQYRSISKLKSTYTDALPRLVDPKTGRVHTS 622

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q IT+     +SDP+   I         +R   IA  G  ++ AD + IE RVLA ++
Sbjct: 623 YNQAITNTGRLSSSDPNLQNIPVRGEEGRGIRRAFIAEPGSLILSADYSQIELRVLAHLS 682

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++   +AF  GED++  T A  F + P  VT + R   KV+   + Y  GA +    A 
Sbjct: 683 GDRVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQAKVINFGVIYGQGAFSL---AK 739

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        +                                         + + ++
Sbjct: 740 ELGVAPKQAKAFI-----------------------------------------ENYFER 758

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           HS      +      E         I  +R  +P +  K           +G +  +   
Sbjct: 759 HSGARSFLDRCIAEAETC--GFVTTILGRRLQIPEIASK-----------NGNARAFAQ- 804

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+  N                    +Q  + DI+   M+         K    +++ 
Sbjct: 805 ---RNATNYP------------------IQGSAADIIKAAMIRVTRRMLEEKVASRLIMQ 843

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E P  + E    ++   M         +PLK +
Sbjct: 844 VHDELVFEVPRNERELMEDLVRAEMEGALP--LSVPLKVD 881


>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
 gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Pseudomonas entomophila L48]
          Length = 922

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/559 (18%), Positives = 174/559 (31%), Gaps = 76/559 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D    G+   A+   ++  +F  + +        HD    P  L         K  LE+ 
Sbjct: 346 DTETTGLD--AQQASIVGLSFAVEPNEAAYVPLAHDYEGAPAQLDREAVLLALKPLLEDP 403

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
               +  N+ ++  +L       +       T++ +      +        A K      
Sbjct: 404 AKGKIGQNAKYDINILANGSPAILMRGVAYDTMLESYVLDSTATRHDMDSLAQKYLDHTT 463

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------- 176
              +++  +  K  T   +               G Y   D  VT  +   L+       
Sbjct: 464 IGFEDIAGKGAKQLTFNQI----------PLEKAGPYAAEDADVTLRLHHALQARLANTP 513

Query: 177 ---PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              P+    E  L  +   I  +G  VD AL    +  +  +  +L++E  +L  G   +
Sbjct: 514 SVLPVLMDIEMPLVPVLAKIERQGALVDAALLGVQSGELGAKLVELEREAYALA-GEEFN 572

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L   L+ + G+ +   T         +      +        +           
Sbjct: 573 LGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDDLAEQGYPLPKVL----------- 621

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                          +Q+   S+         P Q  PR  R H    Q +       +S
Sbjct: 622 ---------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSS 666

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           DP+   I         +R   +AS G KL+ AD + IE R++A +A ++  L AF    D
Sbjct: 667 DPNLQNIPVRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLD 726

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A  F VA A VT DQR   K +   L Y   A     +A   G++       + 
Sbjct: 727 VHRATAAEVFGVALADVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYID 783

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
              A               E     A E  F+ T   R +      +++   L     + 
Sbjct: 784 RYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAERT 836

Query: 528 FEQTIENGKAIIARKRRDV 546
                  G A    KR  V
Sbjct: 837 AINAPMQGTAADIIKRAMV 855


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
          Length = 930

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 112/640 (17%), Positives = 202/640 (31%), Gaps = 157/640 (24%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAVG 113
           K  LEN  +  +  N  ++  VL    N DI +       +L                  
Sbjct: 406 KPILENDKILKIGQNLKYDAEVL---LNYDIELKGIAFDTMLESYVLNSVAGMGRHDMDS 462

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A +  + K    +E+  +  K  T   +          A      Y   D  VT  + +
Sbjct: 463 LAERHLNHKTVSFEEIAGKGKKQLTFNQI----------ALEQAANYAAEDADVTLLLHQ 512

Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P    E +L ++              +  +G  +D A+    ++ +     +L++E 
Sbjct: 513 ALYPQLEAEPKLNHVFREIEMPLVPVLVRMERKGVLIDAAVLAAQSKEITARLAELEKEA 572

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L+T LF +  L +         +T + VL            +  
Sbjct: 573 FELA-GEEFNLASTKQLQTILFEKLQLPVVKKTPSGAPSTNEEVLEELALNHALPKLLLE 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R  A                               +         P     +  R H  
Sbjct: 632 HRSLA-------------------------------KLKSTYTDKLPLMISTKTQRVHTS 660

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      + DP+   I         +R   IA +G K+V AD + IE R++A ++
Sbjct: 661 YHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLS 720

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF  G+D++  T A  F V   +VT DQR   K +   L Y   A     +A 
Sbjct: 721 QDKGLLTAFAEGKDIHRATAAEVFGVPLDEVTSDQRRSAKAINFGLIYGMSAF---GLAR 777

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+                    A+ +     E +P               ++     +
Sbjct: 778 QLGIPRGE----------------AQRYMDLYFERYP-------------GVLRYMENTR 808

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           H           Q + +T+E                               GR L   D+
Sbjct: 809 HQA-------AEQGYVETLE-------------------------------GRRLYLADI 830

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
            ++    N   R+               +Q  + DI+ + M+         K   D+++ 
Sbjct: 831 KSS----NGMRRKAAEREA-----INAPMQGTAADIIKKAMIAVDAWLQTEKPHADMLMQ 881

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  +++ +   + +  LM  +      +PLK +
Sbjct: 882 VHDELVFEVKESELDSVTTKIRELMEQSMQ--LDVPLKVD 919


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 110/634 (17%), Positives = 205/634 (32%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASQYAAEDADVTMKLHQV 540

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   K           E  L  +   I   G  +D       +  ++   ++L+Q + 
Sbjct: 541 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLSELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P    P+  R H    Q +
Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINPKTGRVHTSYHQAV 693

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA++G K+V AD + IE R++A +A ++  
Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLANDEGM 753

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  ++                                          + Q++  V 
Sbjct: 811 RADAKKYME-----------------------------------------RYFQRYPAVQ 829

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++              K+  V  ++              GR L   ++ ++  
Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   KA        +++ VHDE+V
Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914

Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946


>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 927

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/597 (16%), Positives = 189/597 (31%), Gaps = 98/597 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S  +++            ++  +F  +          HD       +P+      
Sbjct: 354 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLAL 403

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  V  V  N  ++R +L    N DI +       +L     + +         
Sbjct: 404 LKPLLEDEKVLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 460

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 461 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 510

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +           E  L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 511 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 570

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 571 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 629

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 630 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 658

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 659 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 718

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y   A     +A  
Sbjct: 719 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 775

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 776 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 828

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           S          +A       G A    KR  + +  +++ +K  + +++     LV+
Sbjct: 829 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVF 885


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 110/634 (17%), Positives = 204/634 (32%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASQYAAEDADVTMKLHQV 540

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   K           E  L  +   I   G  +D       +  ++    +L+Q + 
Sbjct: 541 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P    P+  R H    Q +
Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINPKTGRVHTSYHQAV 693

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA++G K+V AD + IE R++A +A ++  
Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLANDEGM 753

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  ++                                          + Q++  V 
Sbjct: 811 RADAKKYME-----------------------------------------RYFQRYPAVQ 829

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++              K+  V  ++              GR L   ++ ++  
Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   KA        +++ VHDE+V
Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914

Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946


>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
 gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
          Length = 930

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/597 (16%), Positives = 189/597 (31%), Gaps = 98/597 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S  +++            ++  +F  +          HD       +P+      
Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLTL 406

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  V  V  N  ++R +L    N DI +       +L     + +         
Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +           E  L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y   A     +A  
Sbjct: 722 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           S          +A       G A    KR  + +  +++ +K  + +++     LV+
Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVF 888


>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
 gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
          Length = 930

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 176/561 (31%), Gaps = 87/561 (15%)

Query: 34  AFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD    PQ L         K  LE+     V  N  ++ +VL   
Sbjct: 373 SFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY 432

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         +++  +     T   
Sbjct: 433 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 489

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL       E L       E  L  +  
Sbjct: 490 I----------DLDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLS 539

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D       +  +     +L+Q+   +      +    ++L+  LF + GL 
Sbjct: 540 RIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIA-EQEFNMNSPKQLQALLFEKMGLP 598

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +                              
Sbjct: 599 VINKTPSGTPSTNEEVLQELALDYPLPKLILE---------------------------- 630

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
              + G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 631 ---YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 687

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 688 RRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             V+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 748 EDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 799

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            ++M E+    A E  F+ T   R +    +  SR         +A       G A    
Sbjct: 800 MQYM-EDTRSAASEQGFVETIFGR-RLHLPEIQSRNGMRRKAAERAAINAPMQGTAADII 857

Query: 542 KRRDVPLVYMKKDKNNLILML 562
           K+  + +    +++ N  + L
Sbjct: 858 KKAMLLVDQWIQEEGNGRVKL 878


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 117/688 (17%), Positives = 208/688 (30%), Gaps = 168/688 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEAL- 61
           + ID ET S           Y E   ++  +F  +          HD V  P+ L  AL 
Sbjct: 341 IAIDTETTSLN---------YME-AKLVGISFAVEAGKAAYLPLEHDYVDAPEQLDRALV 390

Query: 62  --------ENTDVTIVAHNSYFERTVLK------ACFNLDIPIHRWICTLVLARSNGLPS 107
                   E+ ++  V  N  ++ ++             D  +  ++   V ++ N    
Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFANIGITLRGVQFDTMLESYVFNSVASKHNMDDL 450

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           ALK +G        K    +E+  +  K  T   +                 Y   D  +
Sbjct: 451 ALKYLG-------HKNISFEEIAGKGVKQLTFNQI----------PLETAAPYAAEDADI 493

Query: 168 TREI----FKRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T  +    + RLE L          E  L      I  +G  +D  L    ++ +  +  
Sbjct: 494 TLRLHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLIDSMLLGQQSEELARKID 553

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272
           +L+ +   +  G   +    ++L+   F + G  +   T      T + VL       P 
Sbjct: 554 ELEHKAHEIA-GEPFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 612

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +  +R  A                               +         P     + 
Sbjct: 613 PKIILEHRSLA-------------------------------KLKSTYTDKLPLMVNAKT 641

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q         +S+P+   I         +R   IA EGKK++ AD + IE R
Sbjct: 642 GRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELR 701

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++ +   L AF  G+D++  T A  F+V  ++VT DQR   K +   L Y   A  
Sbjct: 702 IMAHLSQDTGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAF- 760

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +A    +        + T      ++      ++M+E     A +  ++ T   R +
Sbjct: 761 --GLAKQLDIPRAEAQSYIDT-----YFKRYPGVLKYMEETRA-IAADLGYVSTLFGR-R 811

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                   R +       +A       G A    K+  +                     
Sbjct: 812 LYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI--------------------- 850

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
                             Q     T G    E I                      +++ 
Sbjct: 851 ---------------NIAQWIETETQG----EII----------------------MIMQ 869

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSN 654
           VHDE+V E  +    +  + +  LM + 
Sbjct: 870 VHDELVFEVDEAKADSLQAKVCELMAAA 897


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 113/692 (16%), Positives = 195/692 (28%), Gaps = 165/692 (23%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEALE 62
            +D     +  Y  D  ++  +F             H        +P       LK  LE
Sbjct: 345 SVDTETTSLN-YM-DAELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLDYVLNALKPILE 402

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSS 120
                 +  N  ++  VL       I +       +L       +A        ALK   
Sbjct: 403 AETPAKIGQNLKYDMNVLARY---GITLSGVRFDTMLESYVLDAAATRHDMDSLALKYLG 459

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           QK    +++  +  K  T + +                 Y   D  VT ++ + L P   
Sbjct: 460 QKTIAFEDVAGKGAKQITFDQV----------PLLQAATYAAEDADVTLKLHQALWPRVQ 509

Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           K           E  L  +   +   G  +DVA     ++ +     +L+ E  +L  G 
Sbjct: 510 KTPTLTKVFQEIEMPLVGVLSRMEREGARIDVAALKQQSRQLGERMAELEAEAHTLA-GQ 568

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L   L+ +  L +   T      T + VL            +         
Sbjct: 569 PFNLASPKQLGEILYDQLQLPILKKTPKGAPSTDESVLQDLAHDYELPKVLLE------- 621

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                   + G ++         P    PR  R H    Q +  
Sbjct: 622 ------------------------YRGCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVAS 657

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   IA  G  +V AD + IE R++A ++ ++  + 
Sbjct: 658 TGRLSSSDPNLQNIPIRNESGRKIRQAFIAEPGFTMVAADYSQIELRIMAHLSDDESLID 717

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A    V    VT D R   K +   L Y   A     +A   G++  
Sbjct: 718 AFARGLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSAF---GLARQLGISRE 774

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                              +   R   +
Sbjct: 775 QAQAY--------------------------------------------MDRYFHRYPGV 790

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +    +Q  + G       RR               L LP  R+             
Sbjct: 791 LRYMEDIRKQAHDQGYVETLFGRR---------------LYLPEVRAAS----------- 824

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVC 634
                ++ R+           +Q  + DI+   M++         A   +++ VHDE+V 
Sbjct: 825 -----KMRRQAAER-VAINAPMQGSAADIIKRAMIDIDTWLRTQPAKIRMIMQVHDELVF 878

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           E P D        +   M+   S    L ++A
Sbjct: 879 EVPNDVVPDAIEQIQKRMSGAASLKVPLIVEA 910


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 107/558 (19%), Positives = 184/558 (32%), Gaps = 75/558 (13%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           F   +   PV+L     + V+   LK  LE+     V  N  ++R VL    N  I +  
Sbjct: 373 FGHDYLGAPVQL----TEAVVLGKLKPLLEDPARLKVGQNLKYDRNVL---LNHGIELQG 425

Query: 93  WICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                +L     N   S       A +  + +    +E+  +  K  T   +        
Sbjct: 426 IAYDTMLESYVLNSTASRHDMDSLARRYLNAETISFEEIAGKGVKQLTFNQI-------- 477

Query: 151 REAWRLFGEYCKGDVTVTREIFKRL------EP-----LSSKEQELWYLDQTINDRGYCV 199
                    Y   D  +T  + + L      EP      S  E  L  +   +   G  +
Sbjct: 478 --ELEQAAPYAAEDADITLRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARMERLGTTI 535

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           +  L H  +Q ++V   +L+++   L  G   +    ++L   LF + GL +   T    
Sbjct: 536 EPKLLHQQSQEIEVRLAELEKQAHELA-GQEFNLSSPKQLGEILFTKLGLPIIKKTPKGA 594

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
                       +  ++    M                           +  G ++    
Sbjct: 595 PSTAEEVLAELAETYELPQLLM---------------------------EHRGLAKLKST 627

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374
                P    P+  R H    Q +       ++DP+   I         +R   I   G 
Sbjct: 628 YTDKLPLMIKPQTGRVHTSYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGY 687

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           KLV AD + IE R++A ++G++  L AF  G+D++  T A  F VA   VT D R   K 
Sbjct: 688 KLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKA 747

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   L Y   A     +A   G+        +        +E       +M E   + A 
Sbjct: 748 INFGLIYGMSAF---GLAKQLGIGRAEAQKYMDL-----YFERYPGVLEYM-ERTRQQAD 798

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMK 552
              ++ T   R +       SR + L     +A       G A  II R   +V      
Sbjct: 799 AQGYVETLFGR-RLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRG 857

Query: 553 KDKNNLILMLPSGRSLVY 570
            +  ++ +++     LV+
Sbjct: 858 IEDQSIRMLMQVHDELVF 875


>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 772

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 247 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 303

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 304 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 353

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 354 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 413

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 414 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 472

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 473 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 501

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 502 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 561

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 562 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 618

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                    A+ +     E +P                      
Sbjct: 619 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 640

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 641 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 671

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++ +       +        G   + I +A+   I  +  + A +    +++ VHDE+
Sbjct: 672 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 728

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  A  ++ LM 
Sbjct: 729 VFEVHKDDLDAVAKRIHQLME 749


>gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024]
          Length = 881

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/529 (17%), Positives = 170/529 (32%), Gaps = 92/529 (17%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             +        +      E +     +    +    E    +   G   
Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL 823


>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
 gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
          Length = 896

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 115/682 (16%), Positives = 212/682 (31%), Gaps = 156/682 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65
           ID     +        ++  +   ++         H     Q++KE         LEN  
Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKM 123
           +  +  N  ++ +VLK   N  I +       +L        A        ALK    K 
Sbjct: 383 IGKIGQNIKYDYSVLK---NYGITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKT 439

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181
              +++  +  K    + +               G Y   D  +T  +  +L P+  +  
Sbjct: 440 ISYEDVAGKGAKQLRFDQIPV----------EKAGIYAAEDADITLRLHHKLYPMLDEPL 489

Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G  +D  +       +  +   L+QE   L  G   +  
Sbjct: 490 RNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA-GKAFNLN 548

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             ++L+  LF E  L +   T T       S  +        F+ R+ A           
Sbjct: 549 SPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA----------- 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                        L++   S+         P +  P+  R H   +Q +       +SDP
Sbjct: 593 -----------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R+  IA EG  ++ AD + IE R++A ++ +   L+AF  G D++
Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +  F      V+K+QR   K +   L Y   A     +A   G+            
Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER---------- 748

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                 +DA+++       +P                            ++   + +  +
Sbjct: 749 ------QDAQHYIDTYFRRYP----------------------------KVLEYMERTRK 774

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q  + G       RR               L LP                    +R L R
Sbjct: 775 QAHQLGYVETLFGRR---------------LYLP-----------------EINSRNLMR 802

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDE 641
           +           +Q  + DI+ + M+               +++ VHDE+V E   +  E
Sbjct: 803 QKAAERTAINGPMQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVE 862

Query: 642 FNASMLYHLMTSNPSWAKGLPL 663
              ++++ LM         +PL
Sbjct: 863 ECHAIIHKLMEQTVK--LSVPL 882


>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
 gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
          Length = 915

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 180/584 (30%), Gaps = 79/584 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D    G+   A+   ++  +F  + H        HD    P  L         K  LE+ 
Sbjct: 339 DTETTGLD--AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDP 396

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N+ ++  +L    +  I +       +L     N   +       A K     
Sbjct: 397 AKAKVGQNAKYDINILAN-GSPPIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHT 455

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176
               +++  +  K  T   +               G Y   D  +T  +   L+      
Sbjct: 456 TIAFEDIAGKGAKQLTFNQIT----------LDKAGPYAAEDADITLRLHHALQARLAQT 505

Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               P+    E  L  +   I  +G  VD  L    +  + V+  +L+     L  G   
Sbjct: 506 PSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRAYELA-GETF 564

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L T L+ + G+ +   T         +      +        +          
Sbjct: 565 NLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGYPLPEVL---------- 614

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                           +Q+   S+         P Q  PR  R H    Q +       +
Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I         +R   IAS G KL+ AD + IE R++A +A ++  L AF    
Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 718

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  F VA   VT DQR   K +   L Y   A     +A   G++       +
Sbjct: 719 DVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
               A               E     A E  F+ T   R +      +++   L     +
Sbjct: 776 DRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAER 828

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
                   G A    KR  V +     +   +  ++L     LV
Sbjct: 829 TAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELV 872


>gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 923

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 91/610 (14%), Positives = 191/610 (31%), Gaps = 89/610 (14%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTI 68
            +D    G    +    ++  +F  +++         D      +    K   E+  +  
Sbjct: 354 SLDTETTGTDPIS--AKLVGLSFSVEENQAFYVPIPQDFEEAQKIVNEFKSVYEDERILK 411

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124
           +  N  ++  VL+   N  I +   I   ++A     P     +  + E  L   +  +E
Sbjct: 412 IGQNIKYDLMVLQ---NYGITLKGEIFDTMIAHYLLQPELRHGMDYLAEVYLNYQTIHIE 468

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179
           E           +        + P          EY   D  +T ++    EP       
Sbjct: 469 E-------LIGPKGKNQKNMADLPP-----SQVYEYACEDADITLKLKNVFEPKLKEEGC 516

Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G C+D       + +   E  +L++E+ +L  G   +  
Sbjct: 517 YDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNRLEEEIHALA-GEPFNIA 575

Query: 235 CLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +++   LF +  +      T+T    T + VL + +   P   ++  +R         
Sbjct: 576 SPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEHR--------- 626

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G  +         P    P     H   +Q IT     
Sbjct: 627 ----------------------GLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTGRL 664

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +S+P+   I         +R   I   G +   AD + IE R++A ++G+   ++AF  
Sbjct: 665 SSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIEAFRE 724

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T A+ +     +VT+++R+  K     + Y         +A    ++      
Sbjct: 725 GHDIHAATAAKIYKKPLEEVTREERSKAKTANFGIIYGITVF---GLAERMNVSRAEAKE 781

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           L+        +   + + +   E   E    +      C       R  +S  + +    
Sbjct: 782 LID--GYFTTYPKVKEYMQKSIETAREKGYTETIYHRKC-----YLRDINSHNAVVRGYA 834

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
            +        G A    K   + + +  +K+     ++L     L +      +  +   
Sbjct: 835 ERNAINAPIQGSAADIIKIAMIAIYHRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQI 894

Query: 584 T-RQLTREYT 592
              ++ R YT
Sbjct: 895 VIEEMERAYT 904


>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
 gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
          Length = 896

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 213/682 (31%), Gaps = 156/682 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65
           ID     +        ++  +   ++         H     Q++KE         LEN  
Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKM 123
           +  +  N  ++ +VLK   N  I +       +L        A        ALK    K 
Sbjct: 383 IGKIGQNIKYDYSVLK---NYGITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKT 439

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181
              +++  +  K    + +               G Y   D  +T  +  +L P+  K  
Sbjct: 440 ISYEDVAGKGAKQLRFDQIPV----------EKAGIYAAEDADITLRLHHKLYPMLDKPL 489

Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G  +D  +       +  +   L+QE   L  G   +  
Sbjct: 490 RNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA-GKAFNLN 548

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             ++L+  LF E  L +   T T       S  +        F+ R+ A           
Sbjct: 549 SPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA----------- 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                        L++   S+         P +  P+  R H   +Q +       +SDP
Sbjct: 593 -----------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R+  IA EG  ++ AD + IE R++A ++ +   L+AF  G D++
Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +  F      V+K+QR   K +   L Y   A     +A   G+            
Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER---------- 748

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                 +DA+++       +P                            ++   + +  +
Sbjct: 749 ------QDAQHYIDTYFRRYP----------------------------KVLEYMERTRK 774

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q  + G       RR               L LP                    +R L R
Sbjct: 775 QAHQLGYVETLFGRR---------------LYLP-----------------EINSRNLMR 802

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDE 641
           +           +Q  + DI+ + M+               +++ VHDE+V E   +  E
Sbjct: 803 QKAAERTAINGPMQGTAADIIKKTMLAISSWEHSQKSPSAKMIMQVHDELVFEVRKEAVE 862

Query: 642 FNASMLYHLMTSNPSWAKGLPL 663
              +++++LM         +PL
Sbjct: 863 ECHAIIHNLMEQTVK--LSVPL 882


>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
 gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
          Length = 928

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V+ V  N  ++R +L    N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVSKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+Q+
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDPAVLHKHSEEITLRLAELEQK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   I  +   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIPPKDHVIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIYGMSAF---GLA 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                   +A+ +     E +P                      
Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++         +        G   + I +A+   I  +G + + +    +++ VHDE+
Sbjct: 828 IKSSNGARRAGAERAAINAPMQGTAADIIKRAM---IAVDGWLESEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D +  +  ++ LM 
Sbjct: 885 VFEVHKDDLDVVSKKIHQLME 905


>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
 gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
          Length = 930

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 100/597 (16%), Positives = 190/597 (31%), Gaps = 98/597 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S  +++            ++  +F  +          HD       +P+      
Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLAL 406

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  +  V  N  ++R +L    N DI +       +L     + +         
Sbjct: 407 LKPLLEDEKLLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +           E  L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y   A     +A  
Sbjct: 722 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           S          +A       G A    KR  + +  +++K++  + +++     LV+
Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVF 888


>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
 gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
          Length = 930

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 174/561 (31%), Gaps = 87/561 (15%)

Query: 34  AFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD    PQ L         K  LE+     V  N  ++ +VL   
Sbjct: 373 SFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY 432

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         +++  +     T   
Sbjct: 433 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 489

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL                 E  L  +  
Sbjct: 490 I----------DLDEASPYAAEDADVTLRLHNRLFANIEQDDKLKTVYEEIEMPLVPVLS 539

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D       +  +     +L+Q+   +      +    ++L+  LF + GL 
Sbjct: 540 RIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIA-EQEFNMNSPKQLQALLFEKMGLP 598

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +                              
Sbjct: 599 VIKKTPSGTPSTNEEVLQELALDYPLPKLILE---------------------------- 630

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
              + G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 631 ---YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 687

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 688 RRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             V+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 748 EDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 799

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            ++M E+    A E  F+ T   R +    +  SR         +A       G A    
Sbjct: 800 MQYM-EDTRSAASEQGFVETIFGR-RLHLPEIQSRNGMRRKAAERAAINAPMQGTAADII 857

Query: 542 KRRDVPLVYMKKDKNNLILML 562
           K+  + +    +++ N  + L
Sbjct: 858 KKAMLLVDQWIQEEGNGRVKL 878


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 106/669 (15%), Positives = 198/669 (29%), Gaps = 166/669 (24%)

Query: 31  ILFAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
           +  A  + D P +L   W           LK  LE+     V  N  F++++L       
Sbjct: 388 LPVAHDYLDAPAQLDRSWVLTT-------LKPLLEDEQALKVGQNLKFDKSLLARY---G 437

Query: 88  IPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           I +       +L     N +         + +  + K    +E+  +     T   +   
Sbjct: 438 IELRGIAFDTMLESYVLNSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQI--- 494

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTIND 194
                  A      Y   D  VT ++   + P   +           E  L  +   I  
Sbjct: 495 -------ALEQASPYAAEDADVTLQLHLAMWPKLQESEDLLRVFQQIEMPLLPILSRIER 547

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +D ++  T +Q + +  T+L+++   L      +    ++L+  L+ +  L +   
Sbjct: 548 TGVLIDQSILATHSQELTIRLTELEKQAHELA-EEPFNLASPKQLQAILYEKQKLPILKK 606

Query: 255 TE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           T     +T + VL+      P    +                                 +
Sbjct: 607 TPGGAASTNEEVLAELALDYPLPKVLLE-------------------------------Y 635

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
            G ++         P    P   R H    Q +T      + DP+   I         +R
Sbjct: 636 RGLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIR 695

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              IA  G  ++ AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT
Sbjct: 696 QAFIAPAGYCILAADYSQIELRIMAHLSQDKGLLAAFAEGKDIHRATAAEVFGLPLENVT 755

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            +QR   K +   L Y   A     +A    +                            
Sbjct: 756 TEQRRSAKAINFGLIYGMSAF---GLARQLNIPRGEAQ---------------------- 790

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                 +       R   +   + +  +Q  + G          
Sbjct: 791 ----------------------RYMDLYFERYPGVLEYMERTRKQAADQGYVTTLD---- 824

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                              GR L   D+ +     N   R+               +Q  
Sbjct: 825 -------------------GRRLYLPDIHS----RNANRRKAAEREA-----INAPMQGT 856

Query: 606 SRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSW 657
           + DI+   M+               +++ VHDE+V E  ++   +A+  +  LM  +   
Sbjct: 857 AADIIKRAMIAVDAWLQQQAEPLVRVIMQVHDELVFEVHESVVESATQTICDLMEQSMQ- 915

Query: 658 AKGLPLKAE 666
              +PLK E
Sbjct: 916 -LDVPLKVE 923


>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
 gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
          Length = 930

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 101/561 (18%), Positives = 177/561 (31%), Gaps = 87/561 (15%)

Query: 34  AFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD    PQ L         K  LE+     V  N  ++ +VL   
Sbjct: 373 SFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY 432

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         +++  +     T   
Sbjct: 433 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 489

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL       E L       E  L  +  
Sbjct: 490 I----------ELDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLS 539

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D       +  +     +L+Q+   +      +    ++L+  LF + GL 
Sbjct: 540 RIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIA-EQEFNMNSPKQLQALLFEKMGLP 598

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +                              
Sbjct: 599 VIKKTPSGTPSTNEEVLQELALDYPLPKLILE---------------------------- 630

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
              + G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 631 ---YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 687

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +AS G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 688 RRIRQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             V+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 748 EDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 799

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            ++M E+    A E  F+ T   R +    +  SR         +A       G A    
Sbjct: 800 MQYM-EDTRSAASEQGFVETIFGR-RLHLPEIQSRNGMRRKAAERAAINAPMQGTAADII 857

Query: 542 KRRDVPLVYMKKDKNNLILML 562
           K+  + +    +++ N  + L
Sbjct: 858 KKAMLLVDQWIQEEGNGRVKL 878


>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
 gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
          Length = 930

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/597 (16%), Positives = 190/597 (31%), Gaps = 98/597 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S  +++            ++  +F  +          HD       +P+      
Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLAL 406

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  +  V  N  ++R +L    N DI +       +L     + +         
Sbjct: 407 LKPLLEDEKLLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +           E  L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y   A     +A  
Sbjct: 722 DKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           S          +A       G A    KR  + +  +++K++  + +++     LV+
Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVF 888


>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
          Length = 931

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD            + + LK  LE+     V  N  ++ +VL   
Sbjct: 374 SFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY 433

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         +++  +     T   
Sbjct: 434 ---GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 490

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL       E L       E  L  +  
Sbjct: 491 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLS 540

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D       +  +     +L+Q+   +      +    ++L+  LF + GL 
Sbjct: 541 RIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 599

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +   R                          
Sbjct: 600 VVKKTPSGTPSTNEEVLHELALDYPLPKLILEYR-------------------------- 633

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
                G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 634 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 688

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 689 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 748

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 749 DQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 800

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            ++M E+    A +  ++ T   R +    +  SR         +A       G A    
Sbjct: 801 MQYM-EDTRSAAADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 858

Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           K+  + +    +++ N  + L       LV+    ++ S + +  ++L      
Sbjct: 859 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 912


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 117/676 (17%), Positives = 210/676 (31%), Gaps = 162/676 (23%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDH---PV-----ELWDCVHDPVMPQVLKEALENTDV 66
           DL    +   + ++  + FA    +    PV     +  D +    +   LK  LE++  
Sbjct: 354 DLETDSLDTLSANIVGLAFAVAPGEAAYLPVAHDYLDAPDQLDRAAVLAQLKPLLEDSKA 413

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKME 124
             V  N  ++R VLK   N DI ++      +L     N +         A +  + K  
Sbjct: 414 AKVGQNLKYDRGVLK---NYDIELNGIKYDTMLESYCLNSVGGKHDMDSLAARWLNHKTV 470

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------- 177
             +E+  +     T   +          A    G Y   D  VT ++  ++ P       
Sbjct: 471 TFEEIAGKGKNQLTFNQI----------AIEQAGHYAAEDADVTLQLHLKMWPELEKEAG 520

Query: 178 ----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                +  E  L  +   +   G  +D  +    +Q +     +L+Q+   L  G   + 
Sbjct: 521 PKKVFTEIEMPLLKVISRVERNGVLIDQNILAKHSQELTTRLAELEQQAHDLA-GEPFNL 579

Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              ++L+T LF + G+     T     +T + VL+      P    +  +R         
Sbjct: 580 SSTKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEHR--------- 630

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P    P   R H    Q +T     
Sbjct: 631 ----------------------GLSKLKSTYTDKLPLMINPVTGRVHTSYHQAVTATGRL 668

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IA   K++V AD + IE R++A ++ ++  L AF  
Sbjct: 669 SSTDPNLQNIPVRNDEGRRIRQAFIAGPDKRIVAADYSQIELRIMAHLSQDKGLLAAFAQ 728

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T +  F VA ++V+ +QR   K +   L Y   A     ++    +       
Sbjct: 729 GEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAF---GLSRQLNIGAGEA-- 783

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                     KK       R   +   +
Sbjct: 784 ------------------------------------------KKYMDLYFERYPGVLRYM 801

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +  EQ    G                        +    GR L   D+        T++
Sbjct: 802 EETREQAAAKG-----------------------YVETLDGRRLWLPDI--------TSS 830

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETP 637
             + R+           +Q  + DI+   M+               +++ VHDE+V E  
Sbjct: 831 NAIRRKAAERA-AINAPMQGTAADIIKRAMIAVDGWLLEQKDDKVKMIMQVHDELVFEIH 889

Query: 638 DTDEFNA-SMLYHLMT 652
                +A   +  LM 
Sbjct: 890 QDAVASASDKIRQLME 905


>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 928

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 106/627 (16%), Positives = 199/627 (31%), Gaps = 153/627 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT++QR   K +   L Y  G  AF  ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIY--GMSAF-GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                   +A+ +     E +P                      
Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVL 626
           + ++ +       +                Q  + DI+   M+       A +    +++
Sbjct: 828 IKSSNAARRAGAERAA---------INAPTQGTAADIIKRAMIAVDAWIQAEQPRVRMIM 878

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMT 652
            VHDE+V E    D +  A  ++ LM 
Sbjct: 879 QVHDELVFEVHKDDLDAVAKRIHQLME 905


>gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
          Length = 930

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 101/594 (17%), Positives = 187/594 (31%), Gaps = 89/594 (14%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD            + + LK  LE+     V  N  ++ +VL   
Sbjct: 373 SFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY 432

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         +++  +     T   
Sbjct: 433 ---GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 489

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL       E L       E  L  +  
Sbjct: 490 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLS 539

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D       +  +     +L+Q+   +      +    ++L+  LF + GL 
Sbjct: 540 RIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 598

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +         +T + VL       P    +   R                          
Sbjct: 599 VVKKTPSGAPSTNEEVLQELALDYPLPKLILEYR-------------------------- 632

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
                G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 633 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 687

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 688 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 748 DQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 799

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            ++M E+    A +  ++ T   R +    +  SR         +A       G A    
Sbjct: 800 MQYM-EDTRSAAADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 857

Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           K+  + +    +++ N  + L       LV+    ++ S + +  ++L      
Sbjct: 858 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 911


>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
 gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
          Length = 928

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/537 (16%), Positives = 175/537 (32%), Gaps = 78/537 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  V  +  N  F++ V+       I +       +L     + +         
Sbjct: 405 LKPLLEDESVAKIGQNLKFDKGVMARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI--- 171
           + +    K    +E+  +     T   +                 Y   D  VT  +   
Sbjct: 462 SDRYLQHKTITFEEIAGKGKNQLTFNQI----------PLEQAAVYAAEDADVTLRLHET 511

Query: 172 -FKRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            + +LEP           +  L  +   +   G  +D  +    +Q +     +L+ +  
Sbjct: 512 LWAKLEPQPELCKVFQNIDMPLVPVLSRMERTGVLIDTTILGEHSQELTQRLAELEVQAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L T L+ +  L +   T      T + VL+      P    +  +
Sbjct: 572 ELA-GEAFNLSSPKQLGTILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPLPKLILEH 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R  A                               +         P    P   R H   
Sbjct: 631 RELA-------------------------------KLKSTYTDKLPQMINPLTKRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I         +R   IA EG  ++ AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSSDPNLQNIPVRNEQGRRIRQAFIAPEGYHILAADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  G D++  T A  F +   +VT +QR   K +   L Y   A     ++  
Sbjct: 720 DAGLLRAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAF---GLSRQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +  N     +        + +     +   E   + A +  ++ T  +  +      H
Sbjct: 777 LAIPRNEAQKYMN------LYFERYPGVQEYMERTRQQAADQGYVST-LDGRRLYLPDIH 829

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           SR +       +A       G A    K+  + +  +++++K  + +++     LV+
Sbjct: 830 SRNAMSRKAAERAAINAPMQGTAADIIKKAMIAIDGWLQQEKPLVTMLMQVHDELVF 886


>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
 gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
          Length = 934

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 108/672 (16%), Positives = 207/672 (30%), Gaps = 159/672 (23%)

Query: 34  AFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  ++         HD       + +      LK  LE+     V  N  ++ +VL   
Sbjct: 377 SFSVEEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPYLEDETKAKVGQNLKYDASVLARY 436

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              DI +       +L     N +         AL+         +E+  +  K  T   
Sbjct: 437 ---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQ 493

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190
           +          A      Y   D  +T  +   L              +  E  L  +  
Sbjct: 494 I----------ALEEAAPYAAEDADITLRLHNVLHAKLVTDEKLNAVFTDIELPLISVLS 543

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +  +G  +D  L    +  +     +L+     +  G   +    ++L+T LF +  L 
Sbjct: 544 RMERKGVYIDDMLLSAQSLEIGQRLDELETASFEVA-GQEFNMNSPKQLQTILFEKMELP 602

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           +   T +              + +Q         +                      L++
Sbjct: 603 VIKKTPSGA-------ASTNEEVLQELALEYELPKL--------------------ILEY 635

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
            G ++         P    P   R H    Q +T      ++DP+   I         +R
Sbjct: 636 RGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNKEGRRIR 695

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              +A  G K++  D + IE R++A ++ ++  L+AF  G+D++  T A    V+  +VT
Sbjct: 696 QAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAFSAGKDIHAATAAEVKGVSIEEVT 755

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K +   L Y   A     +A   G++                  +A+++    
Sbjct: 756 SEDRRRAKAINFGLIYGMSAF---GLAKQIGISRG----------------EAQDYMNVY 796

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            E +P                                       Q +E  + ++A ++  
Sbjct: 797 FERYP------------------------------------GVMQYMEETR-LLATEQGY 819

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           V  +Y              GR L         +  N   R+               +Q  
Sbjct: 820 VETLY--------------GRRLYLP----EINARNAIRRKAAERAA-----INAPMQGT 856

Query: 606 SRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSW 657
           + DI+ + M+              ++++ VHDE+V E  + + E     +  LM +  S 
Sbjct: 857 AADIIKKAMILVDNWIEAEGTGRVNLLMQVHDELVFEVKEDELEAITKQVTALMEAAVS- 915

Query: 658 AKGLPLKAE-GY 668
              +PL AE G+
Sbjct: 916 -LDVPLIAESGF 926


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 105/585 (17%), Positives = 190/585 (32%), Gaps = 101/585 (17%)

Query: 6   IDFETRSP------------IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PV 52
           +D ET +              DL    +   + +  +I  +F             HD   
Sbjct: 334 LDEETFTSWLKKLQHSELFAFDLETDSLDTLSAN--IIGISFATAPGEAAYLPVAHDYLD 391

Query: 53  MPQVL---------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS- 102
            P+ L         K  LE+     V  N  F+R VLK     DI +       +L    
Sbjct: 392 APEQLDRSDVLARLKPLLEDPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYA 448

Query: 103 -NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            N +         A +    K    +E+  +     T   +          A      Y 
Sbjct: 449 LNSVAGRHDMDTLASRWLQHKTVTFEEIAGKGKNQLTFNQI----------ALEQAAHYA 498

Query: 162 KGDVTVTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQI 210
             D  VT ++  ++ P   KEQ            L  +   I   G  +D ++    +Q 
Sbjct: 499 AEDADVTLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQE 558

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
           +     +L+ +   L  G   +    ++L+T LF + G+     T     +T + VL+  
Sbjct: 559 LGSRLAELELKAHELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAEL 617

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
               P    +  +R                               G ++         P 
Sbjct: 618 ALDYPLPKVILEHR-------------------------------GLAKLKSTYTDKLPL 646

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
              P   R H    Q +T      +SDP+   I         +R   IA +G +++ AD 
Sbjct: 647 MINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRILAADY 706

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R++A ++ ++  L AF + +D++  T A  F VA  +V+ +QR   K +   L Y
Sbjct: 707 SQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIY 766

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              A     ++    +        +        +E      ++M E+  E A +  ++ T
Sbjct: 767 GMSAF---GLSRQLNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAQKGYVST 817

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
             +  +      ++  +       +A       G A    KR  +
Sbjct: 818 -LDGRRLYLPDINASNAMRRKAAERAAINAPMQGTAADIIKRAMI 861


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 110/692 (15%), Positives = 208/692 (30%), Gaps = 168/692 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64
           D    G+   + +  +I  +F             HD       + +      LK  LE+ 
Sbjct: 358 DTETDGLDTLSSN--LIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWVLATLKPLLEDD 415

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N  F++++L       I +       +L     + +         A +  + K
Sbjct: 416 KALKVGQNLKFDQSMLARY---GIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHK 472

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
               +E+  +     T   +          A    G Y   D  VT ++   L P   + 
Sbjct: 473 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQQS 522

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   I   G  +D  +    ++ + +   +L+++   L      
Sbjct: 523 EGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EEPF 581

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  L+ +  L +   T     +T + VL+      P    +   R       
Sbjct: 582 NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR------- 634

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 635 ------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 670

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              + DP+   I         +R   IA +G +++ AD + IE R++A ++ ++  L AF
Sbjct: 671 RLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAF 730

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T A  F     +VT +QR   K +   L Y   A    +  S         
Sbjct: 731 AAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLSI-------- 782

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                         +A+ +     E +P                             +  
Sbjct: 783 -----------PRGEAQRYMDLYFERYP----------------------------GVLE 803

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            + +  +Q  + G                             GR L   D+ +     N 
Sbjct: 804 YMERTRKQAADQGYVTTLD-----------------------GRRLYLPDIHS----RNA 836

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635
           T R+               +Q  + DI+   M+               +++ VHDE+V E
Sbjct: 837 TRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFE 891

Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
             ++   +A   +  LM  +   A  +PLK +
Sbjct: 892 VHESVLESAEQKIRELMEQSMQLA--VPLKVD 921


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 179/558 (32%), Gaps = 76/558 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115
           LK  LEN ++  V  N  F+ T+        I +      T++L+ +            A
Sbjct: 429 LKPILENPNIGKVGQNLKFDMTIFAR---NGIELRGIEFDTMLLSYTLDSTGRHNMDDLA 485

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +    +++  +     T   +               GEY   D  VT ++ + L
Sbjct: 486 KRYLGHQTIGFEDIAGKGKNQLTFNQI----------PLEQAGEYAAEDADVTMKLQQVL 535

Query: 176 -----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E   S E  L  +   +   G  +D       +  +    T L+ +   
Sbjct: 536 WGKLQSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTALEMQAHE 595

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF + GL +         +T + VL            +  +R
Sbjct: 596 LA-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEDVLEELAYSHELPKVLVEHR 654

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P    P+  R H    
Sbjct: 655 -------------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYH 683

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +SDP+   I         +R   IA +G K++ AD + IE R++A ++ +
Sbjct: 684 QAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 743

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AF  G+D++ +T A  F +   QVT +QR   K +   L Y   +     ++   
Sbjct: 744 AGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSF---GLSRQL 800

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +                +    +  E A    ++ T   R +    + +S
Sbjct: 801 GISRADAQRYMDLYFQRYP------GVQTFMHDIREKAKAQGYVETLFGR-RLYLPEINS 853

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             +       +        G A    K   + L  + +D  ++ +++     LV+     
Sbjct: 854 SNAMRRKGAERVAINAPMQGTAADIIKCAMIKLDEITRDDPDIHMIMQVHDELVFEVRSE 913

Query: 576 NRSYLNTTTRQLTREYTY 593
             ++ +   +Q       
Sbjct: 914 KIAFFSDLIKQHMEAAAE 931


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 206/682 (30%), Gaps = 168/682 (24%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFE 76
           D  ++  +F  ++         HD            +   LK  LE+  V  V  +  ++
Sbjct: 366 DAELVGVSFCIEEGEAAYVPVAHDYPDAPAQLSREFVLDALKPILESDTVIKVGQHIKYD 425

Query: 77  RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
           + VL    N DI ++      +L     N           AL     K    +E+  +  
Sbjct: 426 KNVLA---NYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEEIAGKGA 482

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSS-------KEQ 183
           K  T   +          +    G Y   D  +T      I+ +L+ +          E 
Sbjct: 483 KQLTFNQI----------SLEEAGPYAAEDADITLRLHNAIWTKLKEIPELKNLLIDVEV 532

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  +D       +Q +     +L+ E+     G   +    ++L+  L
Sbjct: 533 PLACVLSRMEQEGVLIDSQRLRQQSQDLATRIAELESEVHEEA-GEPFNLGSTKQLQHVL 591

Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           F +  L +   T      T + VL       P   ++                       
Sbjct: 592 FEKMSLPIIKKTPKGAPSTSEDVLQELALEYPLPKKIME--------------------- 630

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                     + G ++         P     R  R H    Q +T      ++DP+   I
Sbjct: 631 ----------YRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAVTATGRLSSTDPNLQNI 680

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    VR   +  EG K V AD + IE R++A ++G++  L AF  G+D++  T A
Sbjct: 681 PIRNEEGRRVRQAFVPREGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHGKDIHKATAA 740

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F V   +VT +QR   K +   L Y   A     ++    +  N     +        
Sbjct: 741 EVFGVPLDEVTTEQRRSAKAINFGLIYGMSAF---GLSKQLNIPRNEAQKYMD------L 791

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           + +         ++  E A                                + + +T+  
Sbjct: 792 YFERYPGVLEYMDSTRESAK------------------------------EKGYVETVFG 821

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTY 593
            +                       L LP  ++    R  G  R+ +N            
Sbjct: 822 RR-----------------------LYLPDIKASNGARRKGAERAAINAPM--------- 849

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT---KAGYD----IVLTVHDEIVCET-PDTDEFNAS 645
                    Q  + DI+   M+      +        +++ VHDE+V E   D  E   S
Sbjct: 850 ---------QGTAADIIKMAMIKVDDWIRKNASDDVTMMMQVHDELVFEIREDKVETYVS 900

Query: 646 MLYHLMTSNPSWAKGLPLKAEG 667
            +  LM S  +    +PL  E 
Sbjct: 901 TITALMESAAT--LNVPLVVEA 920


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 111/697 (15%), Positives = 206/697 (29%), Gaps = 178/697 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59
           D    G+   + ++  + FA                D P +L   W           LK 
Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRDWVLAQ-------LKP 410

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
            LE+     V  N  F++++L      DI +       +L     N +         A +
Sbjct: 411 LLEDDKALKVGQNLKFDQSMLARY---DINLRGIAFDTMLESYVLNSVAGRHDMDSLAER 467

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + K    +E+  +     T   +          A    G Y   D  VT ++   L P
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517

Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              +           E  L  +   I   G  +D  +    ++ + +   +L+++   L 
Sbjct: 518 KLQQSEGLKQVFQEIEMPLLPVLSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  L+ +  L +   T     +T + VL+      P    +   R  
Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G ++         P    P   R H    Q 
Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMISPVSGRVHTSYHQA 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      + DP+   I         +R   IA +G +++ AD + IE R++A ++ ++ 
Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKG 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F +   +VT +QR   K +   L Y   A     +A    +
Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIYGMSAF---GLARQLNI 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                                             +       R 
Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             +   + +  +Q  + G                             GR L   ++ +  
Sbjct: 799 PGVLEYMERTRKQAADQGYVTTLD-----------------------GRRLYLPEIHS-- 833

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHD 630
              N T R+               +Q  + DI+   M+               +++ VHD
Sbjct: 834 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPKVRVIMQVHD 886

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E  ++  E     +  LM  +   A  +PLK +
Sbjct: 887 ELVFEVHESVLESTEQKVRELMEQSMQLA--VPLKVD 921


>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
 gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
          Length = 915

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 105/583 (18%), Positives = 178/583 (30%), Gaps = 77/583 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D    G+   A+   ++  +F    H        HD    P  L         K  LE+ 
Sbjct: 339 DTETTGLD--AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVLLALKPLLEDP 396

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
               V  N+ ++  +L               T++ +      +        A K      
Sbjct: 397 AKAKVGQNAKYDINILANGSPAIAMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTT 456

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK---------- 173
              +++  +  K  T   +               G Y   D  +T  +            
Sbjct: 457 IAFEDIAGKGAKQLTFNQI----------DLDKAGPYAAEDADITLRLHHALQARLAQTP 506

Query: 174 RLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            L+P+    E  L  +   I  +G  VD AL H  +  +  +  +L++    L  G   +
Sbjct: 507 SLQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGEKMAELERRAYELA-GEEFN 565

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L   L+ + G+ +   T         +      +        +           
Sbjct: 566 LGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELAELGYPLPEVL----------- 614

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                          +Q+   S+         P Q  PR  R H    Q +       +S
Sbjct: 615 ---------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSS 659

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           DP+   I         +R   IAS G KL+ AD + IE R++A +A ++  L AF    D
Sbjct: 660 DPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLD 719

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A  F VA   VT DQR   K +   L Y   A     +A   G++       + 
Sbjct: 720 VHRATAAEVFGVALENVTVDQRRKAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYID 776

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
              A               E     A E  F+ T   R +      +++   L     + 
Sbjct: 777 RYFARYP------GVLAYMERTRTQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAERT 829

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
                  G A    KR  V +     +   +  ++L     LV
Sbjct: 830 AINAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELV 872


>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
 gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
          Length = 928

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 106/619 (17%), Positives = 197/619 (31%), Gaps = 98/619 (15%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 829

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573
           S          +A       G A    KR  + +  +++ ++  + +++     LV+   
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889

Query: 574 GNNRSYLNTTTRQLTREYT 592
            ++   +     QL    T
Sbjct: 890 KDDVDAVAKQIHQLMENCT 908



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
           Q  + DI+   M      + A +    +++ VHDE+V E   D  +  A  ++ LM 
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905


>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
           [Shigella flexneri 2002017]
 gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671]
 gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71]
 gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304]
          Length = 928

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 106/619 (17%), Positives = 197/619 (31%), Gaps = 98/619 (15%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 829

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573
           S          +A       G A    KR  + +  +++ ++  + +++     LV+   
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889

Query: 574 GNNRSYLNTTTRQLTREYT 592
            ++   +     QL    T
Sbjct: 890 KDDVDAVAKQIHQLMENCT 908



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
           Q  + DI+   M      + A +    +++ VHDE+V E   D  +  A  ++ LM 
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 121/697 (17%), Positives = 214/697 (30%), Gaps = 170/697 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64
           D    GI   A+   ++  +F    +        H  + +P+ L         K  LE+ 
Sbjct: 357 DTETTGID--AQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDP 414

Query: 65  DVTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
           +   V  ++ F+  +L  C      N  I +       +L     N   +       A K
Sbjct: 415 NKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQK 474

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +      +++  +  K  T + +          A    G Y   D  VT  + + L  
Sbjct: 475 YLNHTTVSFQDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQTLFE 524

Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                      L+  E  L  +   I  +G  VD  L    +  +  +   L++E   + 
Sbjct: 525 KLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDADLLGIQSIELGNKMVALEREAFEIA 584

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   L+ + GL +   T      T + VL+   +   +  +V      
Sbjct: 585 -GEEFNLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVL----- 638

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                    ++    S+         P Q  PR  R H    Q 
Sbjct: 639 -------------------------MEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 673

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +       +SDP+   I         +R   +A +G KL+ AD + IE R++A ++ ++ 
Sbjct: 674 VASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEG 733

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF    D++  T A  F V   +VT DQR   K +   L Y  GA   QK+    G+
Sbjct: 734 LMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGA---QKLGKDIGV 790

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +  T                                             K       +R 
Sbjct: 791 DTKTA--------------------------------------------KAYIDTYFARY 806

Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             +   + +   Q  + G    I  +R  +P +   K         P  R+         
Sbjct: 807 PGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNK---------PQERAAA------E 851

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
           R+ +N                     Q  + DI+ + M+              ++L VHD
Sbjct: 852 RTAINAPM------------------QGTAADIIKKAMVAVDNWLCASGLDAKVILQVHD 893

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           E+V E  +         +   M+        +PL  E
Sbjct: 894 ELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVE 928


>gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70]
 gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218]
          Length = 928

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 106/619 (17%), Positives = 197/619 (31%), Gaps = 98/619 (15%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 829

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573
           S          +A       G A    KR  + +  +++ ++  + +++     LV+   
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889

Query: 574 GNNRSYLNTTTRQLTREYT 592
            ++   +     QL    T
Sbjct: 890 KDDVDAVAKQIHQLMENCT 908



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
           Q  + DI+   M      + A +    +++ VHDE+V E   D  +  A  ++ LM 
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/594 (16%), Positives = 185/594 (31%), Gaps = 89/594 (14%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD            + + LK  LE+     V  N  ++ +VL   
Sbjct: 371 SFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDAAKAKVGQNLKYDASVLARY 430

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              DI +       +L     N +         AL+         +++  +     T   
Sbjct: 431 ---DIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 487

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL                 E  L  +  
Sbjct: 488 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLS 537

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D       +  +     +L+++   +      +    ++L+  LF + GL 
Sbjct: 538 RIERTGVFIDEMKLSAQSVEITARLDELEKKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 596

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +                              
Sbjct: 597 VVKKTPSGTPSTNEEVLQELALDYPLPKLILE---------------------------- 628

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
              + G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 629 ---YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAG 685

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 686 RRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 745

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             V+ +QR   K +   L Y   A     +A   G+        + T      +E     
Sbjct: 746 EDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMDT-----YFERYPGV 797

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            ++M++     A +  ++ T   R +    +  SR         +A       G A    
Sbjct: 798 MQYMEDTRST-AADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 855

Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           K+  + +    +++ N  + L       LV+    ++ S + +  ++L      
Sbjct: 856 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 909


>gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
          Length = 915

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 110/607 (18%), Positives = 185/607 (30%), Gaps = 83/607 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D    G+   A+   ++  +F  + H        HD    P  L         K  LE+ 
Sbjct: 339 DTETTGLD--AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPAQLDREAVLLALKPLLEDP 396

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N+ ++  +L    +  I +       +L     N   +       A K     
Sbjct: 397 AKAKVGQNAKYDINILAN-GSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHT 455

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176
               +++  +  K  T   +               G Y   D  +T  +   L+      
Sbjct: 456 TIAFEDIAGKGAKQLTFNQIN----------LDKAGPYAAEDADITLRLHDALQARLAQT 505

Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               P+    E  L  +   I  +G  VD  L    +  + V+  +L+     L  G   
Sbjct: 506 PSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRAYELA-GETF 564

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L T L+ + G+ +   T         +               +          
Sbjct: 565 NLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVL---------- 614

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                           +Q+   S+         P Q  PR  R H    Q +       +
Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I         +R   IAS G KL+ AD + IE R++A +A ++  L AF    
Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 718

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  F VA   VT DQR   K +   L Y   A     +A   G++       +
Sbjct: 719 DVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
               A               E     A E  F+ T   R +      +++   L     +
Sbjct: 776 DRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAER 828

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                   G A    KR  V +     +   +  ++L     LV       R  L    +
Sbjct: 829 TAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVL----EVREDLVQQVK 884

Query: 586 QLTREYT 592
              R++ 
Sbjct: 885 DEIRQHM 891


>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
 gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
          Length = 909

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 120/694 (17%), Positives = 215/694 (30%), Gaps = 165/694 (23%)

Query: 7   DFETRS----PIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           D ET S      D+   G+    E  +   +  A  +   P +L        +   LK  
Sbjct: 336 DTETTSLNYMEADI--VGLSFAVERGEAAYVPLAHSYPGAPAQL----DRDAILAALKPL 389

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKL 118
           LE+     +  N  ++ +VL      DI +       +L     +   +       ALK 
Sbjct: 390 LEDPAKPKLGQNLKYDASVLARY---DIHMQGIAFDTMLESYVLDSTGTRHDMDSLALKY 446

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177
             +     +++  +  K  T + +               G Y   D  VT  + + L P 
Sbjct: 447 LGRSTTHFEDVAGKGAKQITFDQV----------GIEQAGPYAAEDAEVTLALHETLWPK 496

Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                      S  E  L  +   +   G  +D       ++ +      L++E  +L  
Sbjct: 497 LQESAGLASVFSDIELPLVPVLSRMERTGALLDEERLWEQSRELGGRLQALEEEAHNLA- 555

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           G V +    ++L   LF +  L +   T      T + VL       P    +  +R   
Sbjct: 556 GQVFNLGSPKQLGQILFEKLELPVIKKTPKGAPSTAEEVLQELALDYPLPKLLIEHR--- 612

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                       G S+         P    PR  R H    Q +
Sbjct: 613 ----------------------------GLSKLKSTYTDKLPGMINPRTGRIHTSYHQAV 644

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA+EG ++V AD + IE R++A ++ +   
Sbjct: 645 TATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAGL 704

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF    D++  T A  F V+   V+ +QR   K +   L Y   A     +A    L+
Sbjct: 705 LEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINFGLIYGMSAF---GLARQLRLD 761

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                             +A+ +     E +P                    R+      
Sbjct: 762 RG----------------EAQRYIDVYFERYP------------------GVREYMDNTR 787

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L +   Q + +T       +  +R  +P + ++                  R     R+
Sbjct: 788 ALAH--EQGYVET-------LFGRRLYLPEINVRNKN---------------RQQAAERT 823

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
            +N                     Q  + DI+   M+   +          +++ VHDE+
Sbjct: 824 AINAPM------------------QGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDEL 865

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
           V E  +   +     L   M++    A  L ++ 
Sbjct: 866 VLEVAEDQLDPVCDELCKQMSAAAELAVPLLVEV 899


>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
 gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
          Length = 915

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 112/607 (18%), Positives = 187/607 (30%), Gaps = 83/607 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D    G+   A+   ++  +F    H        HD    P  L         K  LE+ 
Sbjct: 339 DTETTGLD--AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVLLALKPLLEDP 396

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N+ ++  +L    +  I +       +L     N   +       A K     
Sbjct: 397 AKAKVGQNAKYDINILAN-GSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHT 455

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176
               +++  +  K  T   +               G Y   D  +T  + + L+      
Sbjct: 456 TIAFEDIAGKGAKQLTFNQIN----------LDKAGPYAAEDADITLRLHQALQARLAQT 505

Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               P+    E  L  +   I  +G  VD AL H  +  + V+  +L+Q    L  G   
Sbjct: 506 PSVQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGVKMGELEQRAYELA-GEEF 564

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L   L+ + G+ +   T         +               +          
Sbjct: 565 NLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELALLGYPLPEVL---------- 614

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                           +Q+   S+         P Q  PR  R H    Q +       +
Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I         +R   IAS G KL+ AD + IE R++A +A ++  L AF    
Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 718

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  F VA   VT DQR   K +   L Y   A     +A   G++       +
Sbjct: 719 DVHRATAAEVFGVALQDVTTDQRRKAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
               A               E     A E  F+ T   R +      +++   L     +
Sbjct: 776 DRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAER 828

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                   G A    KR  V +     +   +  ++L     LV       R  L    +
Sbjct: 829 TAINAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVL----EVREDLVQQVK 884

Query: 586 QLTREYT 592
              R++ 
Sbjct: 885 DEIRQHM 891


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/611 (15%), Positives = 191/611 (31%), Gaps = 91/611 (14%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68
            +D    G    +    ++  +F   ++         DP     +    K   E+  +  
Sbjct: 354 SLDTETTGTDPIS--AKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEFKSVYEDERILK 411

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124
           +  N  ++  VL+   N  I +   I   ++A     P     +  + E  L   +  +E
Sbjct: 412 IGQNIKYDLMVLQ---NYGITLKGEIFDTMIAHYLLQPELRHGMDYLAEVYLNYQTIHIE 468

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179
           E           +        + P          EY   D  +T ++    EP       
Sbjct: 469 E-------LIGPKGKNQKNMADLPP-----SQVYEYACEDADITLKLKNVFEPKLKEEGC 516

Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G C+D       + +   E   L++E+ +L  G   +  
Sbjct: 517 YDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNCLEEEIHALA-GEPFNIA 575

Query: 235 CLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +++   LF +  +      T+T    T + VL + +   P   ++  +R         
Sbjct: 576 SPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEHR--------- 626

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G  +         P    P     H   +Q IT     
Sbjct: 627 ----------------------GLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTGRL 664

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +S+P+   I         +R   I   G +   AD + IE R++A ++G+   ++AF  
Sbjct: 665 SSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIEAFRE 724

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T A+ +     +VT+++R+  K     + Y         +A    ++      
Sbjct: 725 GHDIHAATAAKVYKKPLEEVTREERSKAKTANFGIIYGITVF---GLAERMNVSRAEAKE 781

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           L+        +   + + +   E   E    +      C       R  +S  + +    
Sbjct: 782 LID--GYFTTYPKVKEYMQKSIETAREKGYTETIYHRKC-----YLRDINSHNAVVRGYA 834

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI--LMLPSGRSLVYRDVGNNRSYLNT 582
            +        G A    K   +  +Y +  K ++   ++L     L +      +  +  
Sbjct: 835 ERNAINAPIQGSAADIIKIAMI-AIYRRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQ 893

Query: 583 TT-RQLTREYT 592
               ++ R YT
Sbjct: 894 IVIEEMERAYT 904


>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
          Length = 891

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/585 (17%), Positives = 190/585 (32%), Gaps = 101/585 (17%)

Query: 6   IDFETRSP------------IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PV 52
           +D ET +              DL    +   + +  +I  +F             HD   
Sbjct: 296 LDEETFTSWLKKLQHSELFAFDLETDSLDTLSAN--IIGISFATAPGEAAYLPVAHDYLD 353

Query: 53  MPQVL---------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS- 102
            P+ L         K  LE+     V  N  F+R VLK     DI +       +L    
Sbjct: 354 APEQLDRSDVLARLKPLLEDPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYA 410

Query: 103 -NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            N +         A +    K    +E+  +     T   +          A      Y 
Sbjct: 411 LNSVAGRHDMDTLASRWLQHKTVTFEEIAGKGKNQLTFNQI----------ALEQAAHYA 460

Query: 162 KGDVTVTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQI 210
             D  VT ++  ++ P   KEQ            L  +   I   G  +D ++    +Q 
Sbjct: 461 AEDADVTLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQE 520

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
           +     +L+ +   L  G   +    ++L+T LF + G+     T     +T + VL+  
Sbjct: 521 LGSRLAELELKAHELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAEL 579

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
               P    +  +R                               G ++         P 
Sbjct: 580 ALDYPLPKVILEHR-------------------------------GLAKLKSTYTDKLPL 608

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
              P   R H    Q +T      +SDP+   I         +R   IA +G +++ AD 
Sbjct: 609 MINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRILAADY 668

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R++A ++ ++  L AF + +D++  T A  F VA  +V+ +QR   K +   L Y
Sbjct: 669 SQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIY 728

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              A     ++    +        +        +E      ++M E+  E A +  ++ T
Sbjct: 729 GMSAF---GLSRQLNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAQKGYVST 779

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
             +  +      ++  +       +A       G A    KR  +
Sbjct: 780 -LDGRRLYLPDINASNAMRRKAAERAAINAPMQGTAADIIKRAMI 823


>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
 gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
          Length = 911

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 119/701 (16%), Positives = 212/701 (30%), Gaps = 168/701 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV 56
            T   D ET S           Y E   ++  +F  +          HD       + + 
Sbjct: 332 KTFSFDTETTSLN---------YME-AEIVGVSFAVEPGKAAYVPVAHDYMGAPEQLERD 381

Query: 57  -----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSAL 109
                LK  LE+     +  N  ++  VL    N  + ++      +L     N   +  
Sbjct: 382 KVLAALKPLLEDPAYRKIGQNLKYDAHVLA---NHGVQLNGIAEDTMLESYVLNSTANRH 438

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                A K   ++    +++  +  K  T   +          +    G Y   D  +T 
Sbjct: 439 DMDTLASKHLGRETIHFEDIAGKGAKQLTFNQI----------SLEQAGPYAAEDADITL 488

Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++   L P   KE             L  +   +  RG  VD     T +Q +     +L
Sbjct: 489 QLHHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGALVDSQRLRTHSQELAERMLEL 548

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS-SNKKLTPQAIQVF 277
           ++E      G   +    ++L+   + + G  +   T            ++L  +     
Sbjct: 549 EEEAYEKA-GQKFNLGSPKQLQEIFYEKLGFDIIKKTPKGQPSTAEPVLQELAEKYELP- 606

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                      R  L++ G S+         P    PR  R H 
Sbjct: 607 ---------------------------RVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHT 639

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +       +SDP+   I         +R   IA +G KL+ AD + IE R++A +
Sbjct: 640 SYQQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAHL 699

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  LKAF  G D++  T A  FNVA  +V+ +QR   K +   L Y   A     +A
Sbjct: 700 SGDEGLLKAFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAINFGLIYGMSAF---GLA 756

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +  +                                                   +
Sbjct: 757 RQIHVERSEAQ--------------------------------------------SYIDK 772

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R   + N +++   +  + G       RR             L  +  S R+L    
Sbjct: 773 YFERYPGVLNYMNRIRAEAQDTGYVETLFGRRLY-----------LPDIRSSNRNL---Q 818

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIV 625
               R+ +N                     Q  + DI+   M+               ++
Sbjct: 819 QAAERTAINAPM------------------QGTAADIIKRAMLAVDAWLEGDSAPPAKMI 860

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
           + VHDE++ E  ++  E     L  +M+S       L ++A
Sbjct: 861 MQVHDELILEVEESAVEAVKEKLTQIMSSAADLNVPLLVEA 901


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 121/697 (17%), Positives = 213/697 (30%), Gaps = 170/697 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64
           D    GI   A+   ++  +F    +        H  + +P+ L         K  LE+ 
Sbjct: 353 DTETTGID--AQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDP 410

Query: 65  DVTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
           +   V  ++ F+  +L  C      N  I +       +L     N   +       A K
Sbjct: 411 NKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQK 470

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175
                    +++  +  K  T + +          A    G Y   D  VT  + + L  
Sbjct: 471 YLDHTTVSFQDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQTLFD 520

Query: 176 ---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                      L+  E  L  +   I  +G  VD  L    +  +  +   L++E   + 
Sbjct: 521 KLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDAELLGIQSIELGNKMIALEREAFEIA 580

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   L+ + GL +   T      T + VL+   +   +  +V      
Sbjct: 581 -GEEFNLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVL----- 634

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                    ++    S+         P Q  PR  R H    Q 
Sbjct: 635 -------------------------MEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 669

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +       +SDP+   I         +R   +A +G KL+ AD + IE R++A ++ ++ 
Sbjct: 670 VASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEG 729

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF    D++  T A  F V   +VT DQR   K +   L Y  GA   QK+    G+
Sbjct: 730 LMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGA---QKLGKDIGV 786

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +  T                                             K       +R 
Sbjct: 787 DTKTA--------------------------------------------KAYIDTYFARY 802

Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             +   + +   Q  + G    I  +R  +P +   K         P  R+         
Sbjct: 803 PGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNK---------PQERAAA------E 847

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
           R+ +N                     Q  + DI+ + M+              ++L VHD
Sbjct: 848 RTAINAPM------------------QGTAADIIKKAMVAVDNWLCASGLDAKVILQVHD 889

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           E+V E  +         +   M+        +PL  E
Sbjct: 890 ELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVE 924


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/598 (17%), Positives = 201/598 (33%), Gaps = 98/598 (16%)

Query: 6   IDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ 55
           +D ET S  +LT          + G+  Y      I  A  + D P    D +    + +
Sbjct: 353 VDTETDSLDNLTANLVGISFATEPGLAAY------IPVAHDYLDAP----DQLSRDRVLE 402

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
           +LK  LE+  +  V  N  F+R +L+   N  I +       +L     + +        
Sbjct: 403 LLKPLLEDESLVKVGQNLKFDRGILQ---NYGIELRGIAFDTMLESYILDSVSGRHDMDS 459

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            + +         +++  +     T   +               G Y   D  VT ++  
Sbjct: 460 LSSRWLKHTTITFEQIAGKGKNQLTFNQI----------DLEQAGRYAAEDADVTLQLHL 509

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           ++ P   +           E  L  +   I   G  +D A+ H  +Q + ++ T+L+Q+ 
Sbjct: 510 KMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLTELEQKA 569

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +  G   +    ++L+T LF + G+     T     +T + VL       P    +  
Sbjct: 570 HEIA-GEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL- 627

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                         Q+ G ++         P    P+  R H  
Sbjct: 628 ------------------------------QYRGLAKLKSTYTDKLPQMINPKTGRVHTS 657

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++
Sbjct: 658 YHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 717

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF  G+D++  T A  F +    V+ +QR   K +   L Y   A     ++ 
Sbjct: 718 RDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAF---GLSR 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +      E +     +    ++   E    +   G             
Sbjct: 775 QLNIPRKESQKYMD--LYFERYPGVLEYMERTRKQAKEQGYVETLDGRRL-----YLPDI 827

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           ++  +       +A       G A    KR  + +  +++K++  + +++     LV+
Sbjct: 828 NASNAARRAGAERAAINAPMQGTAADIIKRAMIAVDGWLQKEQPRVKMIMQVHDELVF 885


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 115/662 (17%), Positives = 197/662 (29%), Gaps = 155/662 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIH 91
               ++  PV+L        + ++L  A ENT +T +  N  ++ TVL  C F +D P+ 
Sbjct: 349 VGHAYEGAPVQL----DRDAVLRILAPAFENTKITKIGQNVKYDWTVLSRCGFKIDGPVF 404

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
             +    L         L  +                L  R    +         K    
Sbjct: 405 DTMIAAYLLNPTRRSYGLDRLAADY------------LNHRMISYQDVTGTGKNAKCFSA 452

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDV 201
                   Y   D  +T  + + LE           L + E  L  +   +   G  VD 
Sbjct: 453 VPLEEAIPYAAEDADITFSLHRLLEKELKQGGLFELLETIEMPLVPVLMHMEMAGVAVDR 512

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL-----EDLTE 256
                L++ ++ +  KL+ E+  L  G   +    ++L   LF + GL       +    
Sbjct: 513 EALAALSKELEGQLEKLEGEIYGLA-GETFNINSPQQLGVILFEKLGLPTQKKTKKKTGY 571

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL++          +  +R  A                               + 
Sbjct: 572 STDADVLTTLADHHELPALLLRHRTLA-------------------------------KL 600

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                       LP   R H   +Q  T      ++DP+   I         +R   +  
Sbjct: 601 KSTYADALAELILPETGRIHTSFNQTATATGRLSSTDPNLQNIPIRTEEGRQIRKAFVPR 660

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
            G   V AD + +E R+LA  + +   ++AFE  ED++  T +  F + P  +T+D R  
Sbjct: 661 PGWTFVSADYSQVELRILAHYSQDPILIEAFENDEDIHTRTASEVFQLFPEMITEDVRRQ 720

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y         +A   G++                                 
Sbjct: 721 AKAINFGIVYGISPF---GLARDLGISQKMA----------------------------- 748

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                          K       SR S +   + +A     E G+      R        
Sbjct: 749 ---------------KNYMDSYFSRYSRVKEFMDKAIADARETGQTRTMFGR-------- 785

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                  I  LP   S        NR+      R                +Q  + DI+ 
Sbjct: 786 -------IRYLPDIDS-------PNRTLQGYAER----------AAINTPIQGTAADIMK 821

Query: 612 EGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664
             M+   KA         ++L+VHDEIV E P  +     +++  +M +    A  L + 
Sbjct: 822 LAMIATEKALAKEKLVSVMLLSVHDEIVLECPPDEVKTVSALVADIMENVCDLAVRLKVN 881

Query: 665 AE 666
             
Sbjct: 882 VA 883


>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
 gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
 gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
 gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
          Length = 928

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/529 (17%), Positives = 169/529 (31%), Gaps = 92/529 (17%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +        L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTRLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELERKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             +        +      E +     +    +    E    +   G   
Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL 823



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
           Q  + DI+   M      + A +    +++ VHDE+V E   D  +  A  ++ LM 
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905


>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
 gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
          Length = 933

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 110/642 (17%), Positives = 200/642 (31%), Gaps = 156/642 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  F+  +L      DI +       +L     + +       
Sbjct: 407 ETLKPLLEDEKALKVGQNLKFDMGLLARY---DITLRGIAFDTMLESYVLDSVGGRHDMD 463

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +E+  +  K  T   +          A      Y   D  VT ++ 
Sbjct: 464 SLSDRYLGHKTVTFEEIAGKGKKQLTFNQI----------ALEQAAPYAAEDADVTLQLH 513

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             + P               E  L  +   I   G  +D ++  T +  +     +L+ +
Sbjct: 514 LAMWPQLKESAELLTVFNEIEMPLVPVLSHIERTGVLIDQSILATHSIELTKRLAELEIQ 573

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L+  L+ +  L +   T     +T + VL+      P    + 
Sbjct: 574 AHELA-EEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVIL 632

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P   R H 
Sbjct: 633 EYR-------------------------------GLAKLKTTYTDKLPLMINPFSGRVHT 661

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      +SDP+   I         +R   IA EG ++V AD + IE R++A +
Sbjct: 662 SYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHL 721

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  LKAF  G+D++  T A  F V   +VT +QR   K +   L Y   A     +A
Sbjct: 722 SQDEGLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIYGMSAF---GLA 778

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+                    A+ +     E +P                      
Sbjct: 779 RQLGIPRGE----------------AQRYMDLYFERYP---------------------- 800

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +  +Q  E G                             GR L   D
Sbjct: 801 ------GVLEYMERTRQQAAEQGYVSTLD-----------------------GRRLYLPD 831

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIV 625
           V        +++  + R+           +Q  + DI+   M+               ++
Sbjct: 832 V--------SSSNGMRRKAAERA-AINAPMQGTAADIIKRAMIEVDAWLQGQDEPLVRMI 882

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E  ++  E ++  +  LM ++ + A  +PLK +
Sbjct: 883 MQVHDELVFEIHESVIEASSQRIRELMENSMTLA--VPLKVD 922


>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
 gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
          Length = 937

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/699 (17%), Positives = 214/699 (30%), Gaps = 160/699 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  L N  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    PR +
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +    A               +   E A    F+ T   R + 
Sbjct: 773 -GLAKSLGIDNLSAKNFIDRYFARYP------GVAEYMQRTKEQAAAQGFVETLFGR-RL 824

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                 ++ +       +A       G A    KR  +                      
Sbjct: 825 YLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMI---------------------- 862

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                            +   E            +A   D L             +++ V
Sbjct: 863 --------------DVSRWLSE-----------CEASLWDCLKS----------KLIMQV 887

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P+ + +F    L  +M         +PL AE
Sbjct: 888 HDELVLEVPEAELDFVKEKLPQIMAKVDGGLLDVPLVAE 926


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/697 (16%), Positives = 207/697 (29%), Gaps = 173/697 (24%)

Query: 16  LTKCGICKYAEDVCVI--------LFAFGFDDHPVELWDCVHDPV---MPQVLKEAL--- 61
           L K G  ++A D            L    F   P E W          +P+ L  AL   
Sbjct: 311 LKKAG--RFAFDTETTSLVATRADLVGISFAIKPGEGWYLPVGHRYLGVPEQLDRALVID 368

Query: 62  ------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
                  +T +  +A N+ ++  VL+      + +    C  +LA     P+A     ++
Sbjct: 369 KLRPLMADTQLAKIAQNAKYDLLVLRRA---GLEVAGLSCDTMLASYLANPAA-----KS 420

Query: 116 LKLSSQKMEEGKELIAR-FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             L +       EL+               +              Y   D  +T  +  +
Sbjct: 421 HGLDTLA----SELLGYRTIGYTEVTGKGKKQIGFEEVEIEKATVYATEDADITLRLADK 476

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LEP  ++          E  L  +   +  +G  +D      L+  +      L+ E+  
Sbjct: 477 LEPQLAETGQGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADMKTRLATLEGEIHE 536

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281
           L+ G   +    ++L   LF    L     T+T   T   VL++  +  P A +V     
Sbjct: 537 LS-GRSFNVASPKQLGEVLFEHLKLPRGKKTKTGWSTDVEVLTNLAEEHPIAARVL---- 591

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                       +   ++         P    P   R H   +Q
Sbjct: 592 ---------------------------DYRSVAKLKSTYCDALPKLIHPDTGRIHTSFNQ 624

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   + +EG  L+ AD + +E R+LA MA E 
Sbjct: 625 AVTATGRLSSSDPNLQNIPIRTEEGRRIREAFVPAEGNLLLAADYSQVELRILAHMADEP 684

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              ++F  GED++  T +  F V    VT + R   K +   + Y   A     +A + G
Sbjct: 685 ALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTINFGVLYGMSAF---GLAKSLG 741

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +                                              +     +  ++ +
Sbjct: 742 IARK-----------------------------------------EAQTYIDNYFARYPK 760

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E          +  +     +  +R  VP +  K                        
Sbjct: 761 VLEFMEAKKAEARE--KQYVTTLLGRRCAVPEIASKNGA---------------VRGYAE 803

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
           R+ +N                    +Q  + DI+   M+         K    +VL VHD
Sbjct: 804 RNAINYP------------------IQGSAADIIKVAMLRIHERLKAEKLETKMVLQVHD 845

Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           E+V + P  ++     L    M         +PL  +
Sbjct: 846 ELVFDMPAAEQAAVENLVREQMEHAFE--LDVPLLVD 880


>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
 gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
          Length = 915

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/607 (18%), Positives = 185/607 (30%), Gaps = 83/607 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D    G+   A+   ++  +F  + H        HD    P  L         K  LE+ 
Sbjct: 339 DTETTGLD--AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDP 396

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N+ ++  +L    +  I +       +L     N   +       A K     
Sbjct: 397 AKAKVGQNAKYDINILAN-GSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHT 455

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176
               +++  +  K  T   +               G Y   D  +T  +   L+      
Sbjct: 456 TIAFEDIAGKGAKQLTFNQIN----------LDKAGPYAAEDADITLRLHHALQARLAQT 505

Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               P+    E  L  +   I  +G  VD  L    +  + V+  +L+     L  G   
Sbjct: 506 PSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRAYELA-GETF 564

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L T L+ + G+ +   T         +               +          
Sbjct: 565 NLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVL---------- 614

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                           +Q+   S+         P Q  PR  R H    Q +       +
Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I         +R   IAS G KL+ AD + IE R++A +A ++  L AF    
Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 718

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  F VA   VT DQR   K +   L Y   A     +A   G++       +
Sbjct: 719 DVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
               A               E     A E  F+ T   R +      +++   L     +
Sbjct: 776 DRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAER 828

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                   G A    KR  V +     +   +  ++L     LV       R  L    +
Sbjct: 829 TAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVL----EVREDLVQQVK 884

Query: 586 QLTREYT 592
              R++ 
Sbjct: 885 DEIRQHM 891


>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
 gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
          Length = 937

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/513 (18%), Positives = 154/513 (30%), Gaps = 77/513 (15%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            LK  LE+     +  N  ++R+VL    N  I +       +L     N + S      
Sbjct: 413 QLKPLLEDEHKIKIGQNIKYDRSVL---LNYGITLRGIKYDTMLESYVWNSVASRHNMDD 469

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      K    +EL  +  K  T   L               G Y   D  +T  + +
Sbjct: 470 LAQTYLDYKTVTFEELAGKGVKQLTFNQL----------KIEDAGHYAAEDADITLRLHQ 519

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
              P   +           E  L  +   I   G  VD  L    +  +     +L+++ 
Sbjct: 520 FFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAKLLGQHSIELGERMVQLERKA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L   LF +  L +   T T    T + VL       P       
Sbjct: 580 YELA-GQEFNLSSPKQLGVILFEQLQLPVIKKTPTGTPSTAEEVLQELALDYPLPK---- 634

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                        +++   ++         P    P   R H  
Sbjct: 635 ---------------------------VIMEYRAMAKLKSTYTDKLPLMINPATGRIHTN 667

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       + DP+   I         +R   IA  G KLV AD + IE R++A ++
Sbjct: 668 YHQAVAATGRLSSQDPNLQNIPIKTDEGRRIRQAFIAPAGYKLVAADYSQIELRIMAHLS 727

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L AFE G D++  T A  F VA   VT + R   K +   L Y   A     +A 
Sbjct: 728 SDSGLLSAFEKGLDVHRATAAEVFGVALDSVTPEMRRSAKAINFGLIYGMSAF---GLAK 784

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +  N     +        + +     +    N    A E  ++ T   R +      
Sbjct: 785 QLHVGRNEAQQYID------RYFERYPGVQRYMNNIRAQAHEQGYVETLFGR-RLYLPDI 837

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +++         +        G A    K   +
Sbjct: 838 NAKNKNFQLAAERTAINAPMQGTAADIIKTAMI 870


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115
            LK  LE+     V  N  ++ +VL     +D+       T++++               A
Sbjct: 521  LKPLLEDAGTLKVGQNLKYDFSVLHRY-GIDVAPFD--DTMLISYVLDAGKGGHGMDELA 577

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174
             +    +     ++               RNK    R A      Y   D  VT  +++ 
Sbjct: 578  RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 626

Query: 175  LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            ++P    E            L  +   +   G  +D  +   L+        +L++E++ 
Sbjct: 627  MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               G        +++   LF + GL     T +      ++  +   QA      +    
Sbjct: 687  DA-GEKFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                   L +   S+                 +R H       T
Sbjct: 742  ----------------------ILNWRQLSKLKSTYTDSLQEHADRGTNRVHTSFALAAT 779

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  +SDP+   I         +R   +A EGKKL+ AD + IE R+LA +A      
Sbjct: 780  TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +AFE G D++  T +  F V   Q+T D R   K +   + Y   A     +A   G+  
Sbjct: 840  EAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
               +  +K     E +    ++                      +  K++ R+K   V+ 
Sbjct: 897  EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            L+  +                         Y +   NN     PS R+ V       R  
Sbjct: 933  LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            +N   +         G   + I +A++R    E  + A K    ++L VHDE+V E PD 
Sbjct: 959  INAPIQ---------GTAADIIRRAMTR---MEDALGAEKLAARMLLQVHDELVFEVPDD 1006

Query: 640  D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            + E    ++ H+M   P+ A  L  PL  E 
Sbjct: 1007 EVEATIPVIAHVMEEAPAPALSLSVPLVVEA 1037


>gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
 gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
          Length = 887

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/539 (18%), Positives = 177/539 (32%), Gaps = 79/539 (14%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            LK  LEN  +  V  N  ++ +V+       I +       +LA    N +        
Sbjct: 362 QLKPLLENPQLAKVGQNLKYDASVVARY---GITMRGIAHDTMLASYVYNSVGGKQDMDS 418

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+         +++  +     T   +                 Y   D  VT  +  
Sbjct: 419 LALRFLQHSCISFEQVAGKGKNQLTFNQI----------DLEQAAPYAAEDADVTLRLHH 468

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL+ L              E  L  +   +   G  +D  L    +Q +     +L+++ 
Sbjct: 469 RLQALLEADAPLFGVYRDIEVPLVPVLSRMERTGVLIDDQLLAIQSQEIAQRLVELERKA 528

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L +       T +T + VL       P    +  
Sbjct: 529 YELAD-QEFNLSSPKQLQTILFEQMKLPVVKKTPSGTPSTNEEVLQELALDYPLPAVILE 587

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                               G ++         P    P   R H  
Sbjct: 588 YR-------------------------------GLAKLKSTYTDKLPKMINPTTGRVHTS 616

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      ++DP+   I         +R   IA  G K++  D + IE R++A ++
Sbjct: 617 YHQAVTATGRLSSTDPNLQNIPIRNQEGRRIRQAFIAPSGWKIMAVDYSQIELRIMAHLS 676

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   L AF+ G+D++  T A    V+  QVT +QR   K +   L Y   A     +A 
Sbjct: 677 GDPALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNFGLIYGMSAF---GLAK 733

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+  +   H +      + +E      R+M+E     A E  ++ T   R +    + 
Sbjct: 734 QLGIPRSEAQHYMD-----KYFERYPGVLRYMEETRSM-AAEQGYVETLFGR-RLHLPEI 786

Query: 514 HSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            SR         +A       G A  II +    V      + +  + L++     LV+
Sbjct: 787 QSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDNWIETEGQGRVKLLMQVHDELVF 845


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62
           D ET   ID  K G+         +  +F   ++         +      + +    AL+
Sbjct: 357 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 406

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           N     +  N  F+  VL+     ++ +   +   ++A     P         A      
Sbjct: 407 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 463

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           +    +ELI      +    L  RN P          EY   D  VT ++     P   K
Sbjct: 464 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADVTLKLKNYFAPELKK 514

Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           E            L Y+   +   G  +D       +  +     KL+QE+  L  G   
Sbjct: 515 EGLESLFTTIEMPLIYVLAEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GAEF 573

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    +++   LF    L      T+T    T + VL   +   P   ++          
Sbjct: 574 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLE-------- 625

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                  + G  +         P    P+  + H   +Q +T  
Sbjct: 626 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 662

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I     +   +R   I          AD + IE R++A ++G+   ++
Sbjct: 663 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIE 722

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++G D++  T A+ + +   +VT D R   K     + Y         +A   G+  +
Sbjct: 723 AFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 779

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L+        +       +   E   + A E  ++ T  +R K+     +S  + +
Sbjct: 780 ESKELIDG------YFSTYPRIKEYMEESVKVAKEKGYVETIFKR-KRFLPDINSHNAVV 832

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
                +        G A    K   V +    +++     ++L     L +      
Sbjct: 833 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 889


>gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Shigella flexneri 2930-71]
          Length = 884

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/619 (17%), Positives = 197/619 (31%), Gaps = 98/619 (15%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 360

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 417

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 418 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 467

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 468 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 527

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 528 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 586

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 587 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 615

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 616 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 732

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 733 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 785

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573
           S          +A       G A    KR  + +  +++ ++  + +++     LV+   
Sbjct: 786 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 845

Query: 574 GNNRSYLNTTTRQLTREYT 592
            ++   +     QL    T
Sbjct: 846 KDDVDAVAKQIHQLMENCT 864



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
           Q  + DI+   M      + A +    +++ VHDE+V E   D  +  A  ++ LM 
Sbjct: 805 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 861


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/688 (15%), Positives = 200/688 (29%), Gaps = 167/688 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHDPVMP-------QVLKEALENT 64
           +D    G+      +   L    F  D+            V P       +VL   L +T
Sbjct: 331 VDTETDGLDP----LTCRLVGVSFAVDEGRACYVPLAAPDVRPLPADVVREVLSPLLVST 386

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           +V  V  N  F+  VL+      +         ++A        L++      L     +
Sbjct: 387 EVVKVGQNLKFDYHVLRRW---GVRPEGPFFDTMVAAWL-----LESDAGRYNLDRLAEK 438

Query: 125 E-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE- 182
             G   I         + + ++            G Y   D  +   + + L+     E 
Sbjct: 439 YLGWRTIHY-------KDVVEKGASFETVPVAEAGVYAAEDADIALRLSRVLKERLEAEG 491

Query: 183 ---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                      L  +   + + G  +D        + ++   + +++E+  L  G   + 
Sbjct: 492 LGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGRELEERISTIEKEIFEL-VGHEFNV 550

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L+  LF+E GL     T+T       VL       P A +V   R          
Sbjct: 551 GSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAARDPVAAKVLEYRSL-------- 602

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                                  ++       V P    P   R H    Q+ T      
Sbjct: 603 -----------------------TKLKNTYVDVLPGLVNPGTGRLHTWFSQVGTATGRLS 639

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           + DP+   I         +R   +   G   + AD + IE  +LA ++ +    +AF  G
Sbjct: 640 SKDPNLQNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREG 699

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T +  F V P  VT +QR I K +   + Y   A    +++   G+        
Sbjct: 700 EDVHRATGSLLFGVPPEAVTPEQRRIAKTINFGVIYGMSAF---RLSRELGIPRKEAERF 756

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +        +       R   E     A E  ++                          
Sbjct: 757 IDA------YFTTYAGVRAFIERTIAEAEEKGYV-------------------------- 784

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                        +  ++R +P +  +                  +  G  R  +NT   
Sbjct: 785 -----------TTLFGRKRPLPYITSRNKT---------------QKTGAERIAVNTP-- 816

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639
                           +Q    DI+   M++             ++L VHDE++ E P  
Sbjct: 817 ----------------IQGSGADIIKLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPE 860

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E    ++   M         +PL+ E
Sbjct: 861 ELEVMKRLVRERMEGVV--RLSVPLRVE 886


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/697 (16%), Positives = 209/697 (29%), Gaps = 178/697 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59
           D    G+   + ++  + FA                D P +L   W           LK 
Sbjct: 358 DTETDGLDTLSSNLIGMSFAVAPGEAAYLPLAHDYLDAPAQLDRNWVLAT-------LKP 410

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
            LEN     V  N  F++++L       I +       +L     + +         A +
Sbjct: 411 LLENEKALKVGQNLKFDQSMLARY---GIELRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + K    +E+  +     T   +          A    G Y   D  VT ++   L P
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517

Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              +           E  L  +   I   G  +D  +    ++ + +   +L+++   L 
Sbjct: 518 KLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  L+ +  L +   T     +T + VL+      P    +   R  
Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G ++         P    P   R H    Q 
Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      + DP+   I         +R   IA +G +++ AD + IE R++A ++ ++ 
Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKG 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A    +
Sbjct: 726 LLAAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                               A+ +     E +P   +E                      
Sbjct: 783 PRGE----------------AQRYMDLYFERYP-GGLE---------------------- 803

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                 + +  +Q  E G                             GR L   D+ +  
Sbjct: 804 -----YMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 833

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630
              N   R+               +Q  + DI+   M+               +++ VHD
Sbjct: 834 --RNANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHD 886

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           E+V E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 887 ELVFEVHESVLESAEQKIRDLMEQSMQLA--VPLKVD 921


>gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9]
 gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9]
          Length = 988

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/669 (16%), Positives = 221/669 (33%), Gaps = 136/669 (20%)

Query: 33  FAFGFDDHPVELWDCVH------DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLK 81
             +G  ++ V      H      +  +P       L++ L + D      N+ F+R + K
Sbjct: 410 CCWGTGENDVAYIPLGHNITSNLEKNLPLNTVLSTLEKILVSGDYPKTFQNAKFDRLIFK 469

Query: 82  ACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                 I +   +   +LA     P         AL+    ++ E  +++ +        
Sbjct: 470 ---YQGITLDGVVFDPMLASYVLNPDRTHNLTDLALRYLGLQLTEYDDIVQK-------S 519

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLD 189
              +R K     +      YC   V  T ++  +L             L   EQ L  + 
Sbjct: 520 GKKERQKTIADISIHTVANYCGKQVYATWQLVGKLREELNEIPALFKLLVDVEQPLEVVL 579

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  RG  ++ A    L+Q ++ +   L+ +   +  G   +    ++L   LF + GL
Sbjct: 580 AEMEHRGVIINSAYLQQLSQHIESDLATLEIKATKIA-GEKFNLGSPKQLSYILFEKLGL 638

Query: 250 HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
             +   +  T      ++ +KL                            ++  G +   
Sbjct: 639 STKYSRKISTGYSTDAATLEKLQE--------------------------VDQTGFVDAI 672

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
           +++   ++         P     +  R H   +Q  T      +S+P+   I      S 
Sbjct: 673 IEYRTLAKLKSTYVDALPELVNHKTQRIHTNFNQTATATGRLSSSNPNLQNIPIRTAFSR 732

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +   G  +V AD + IE R+LA ++ E   ++A+   +D++  T    F+    
Sbjct: 733 QIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK--E 790

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT ++R   K +   + Y  G     K + +TG++ N     ++  +            
Sbjct: 791 DVTSEERRFAKTINFGVIYGMGV---LKFSRSTGVDKNIANEFIQKFNQRYPL------V 841

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E   + AI   ++ T   R ++ +   +  + +L                      
Sbjct: 842 FTYLETIKKQAISQGYVETILGR-RRYFDFTNKTLQQL---------------------- 878

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                     K K+   + L   ++L   D G  RS  N                    +
Sbjct: 879 ----------KGKDLQEIELNKLKNLGPYDAGLLRSAANAP------------------I 910

Query: 603 QAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657
           Q  S DI+   M+   +        ++L VHDE+V E P ++       +  +M +    
Sbjct: 911 QGSSADIIKIAMVRLHEVLRRYQAKLLLQVHDELVFEVPPSEWDELQLQIKSVMENAMK- 969

Query: 658 AKGLPLKAE 666
              +PL  +
Sbjct: 970 -LSVPLVVD 977


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/540 (18%), Positives = 186/540 (34%), Gaps = 81/540 (15%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            LK  LE+ +   V  N  ++R VLK   N DI +       +L     N +        
Sbjct: 403 QLKPLLEDENAWKVGQNLKYDRGVLK---NYDIELAGIKFDAMLESYILNSVVGKHDMDS 459

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A +  + K    +E+  +     T   +          A      Y   D  VT ++  
Sbjct: 460 LAARWLNHKTVTFQEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHL 509

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           ++ P   KE             L  +   I   G  +D ++    ++ +     +L+ + 
Sbjct: 510 KMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQSILAQHSKELTARLAELELKA 569

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L+  LF + G+     T     +T + VL+      P    +  
Sbjct: 570 HELA-GEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILE 628

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G S+         P    P   R H  
Sbjct: 629 HR-------------------------------GLSKLKSTYTDKLPLMINPISGRVHTS 657

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      ++DP+   I         +R   +A++G ++V AD + IE R++A ++
Sbjct: 658 YHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHRIVAADYSQIELRIMAHLS 717

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF  GED++  T +  F VA  +V+ +QR   K +   L Y   A     ++ 
Sbjct: 718 QDKGLLDAFAQGEDIHRATASEVFGVALDKVSGEQRRSAKAINFGLIYGMSAF---GLSR 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQ 512
              +        +        +E      R+M EN  + A  + ++ T   R  + W   
Sbjct: 775 QLNIGAGEAKKYMDL-----YFERYPGVLRYM-ENTRQLAASNGYVETLEGR--RLWLPD 826

Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             S  +       +A       G A  II R    V     +++ N + +++     LV+
Sbjct: 827 IKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDEWLEQQNDNAVRMIMQVHDELVF 886


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/601 (16%), Positives = 193/601 (32%), Gaps = 96/601 (15%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------DCVHD-----PVM 53
           ID ET S            A +  ++  +F + +   + W          HD       +
Sbjct: 357 IDTETTSLN----------AMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGAPEQL 406

Query: 54  P-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLP 106
           P       LK  LEN  +  V  N  ++  + K   N  I +       +L     N + 
Sbjct: 407 PIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFK---NAGIEVQGMAYDTMLESYCFNSVA 463

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           +       AL   +      K++     K +T   +                 Y   D  
Sbjct: 464 TRHNMDDLALTYLNHSTIHFKDIAGTGKKQKTFNQI----------ELETASPYAAEDAD 513

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVER 215
           +T ++ + L P    E  L+ + + I              G  +D  +    +  +  + 
Sbjct: 514 ITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLADQSYELGQKL 573

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
           T+L+Q+   L  G   +    ++L+  LF    L +   T                +   
Sbjct: 574 TELEQKAH-LIAGTPFNLNSSKQLQEVLFERLELPIVKKTPKGQPSTAEPVLVQLAEDGH 632

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              N                            L++   ++         P Q   +  R 
Sbjct: 633 EMPNL--------------------------ILEYRSLAKLKSTYTDSLPKQINQQTGRV 666

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H    Q +       +++P+   I         +R   IA  G +L+ +D + IE R++A
Sbjct: 667 HTSYQQAVASTGRLSSTEPNLQNIPIRSAEGRRIRQAFIAQPGYRLMASDYSQIELRIMA 726

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G+   LKAF  G+D++  T A  FN+   +VT +QR   K +   L Y   A     
Sbjct: 727 HLSGDASLLKAFAEGKDIHQATAAEIFNMPLEEVTSEQRRSAKAVNFGLIYGMSAF---G 783

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A    ++       +  N     +    N+    +EN  +    +  +G          
Sbjct: 784 LAKQLNISRGLAQEYI--NLYFARYPGVANYMESTKENAKQTGYVETLMGRRL-----YL 836

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLV 569
              +++  +L     +        G A    K   V +  ++ +   ++ +++     LV
Sbjct: 837 PDINAKNGQLRQYAERTAINAPMQGTAADIIKTAMVKMQQWLDQTPCDIKMLMQVHDELV 896

Query: 570 Y 570
           +
Sbjct: 897 F 897


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/688 (15%), Positives = 198/688 (28%), Gaps = 167/688 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAF--GFDDHPVELWDCVHDPVMP-------QVLKEALENT 64
           +D    G+      +   L       D+            V P       +VL   L + 
Sbjct: 331 VDTETDGLDP----LTCRLVGVSLAVDEGRACYVPLAAPDVRPLPADVVREVLTPLLASQ 386

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
            V+ V  N  F+  VL+      +         ++A        L++      L     +
Sbjct: 387 KVSKVGQNLKFDYHVLRRW---GVRPEGPFFDTMVAAWL-----LESDAGRYNLDRLAEK 438

Query: 125 E-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181
             G   I         + + ++            G Y   D  +   + + L+       
Sbjct: 439 YLGWRTIHY-------KDVVEKGASFETVPVAEAGVYAAEDADIALRLSRVLKERLEAGD 491

Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  L  +   + + G  +D        + +D   + ++ E+  L  G   + 
Sbjct: 492 LGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGRELDERISNIENEIFDL-VGHEFNV 550

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L+  LF+E GL     T+T       VL       P A +V   R          
Sbjct: 551 GSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAAQDPVAAKVLEYRSL-------- 602

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                                  ++       V P    P   R H    Q+ T      
Sbjct: 603 -----------------------TKLKNTYVDVLPGLVNPETGRLHTWFSQVGTATGRLS 639

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           + DP+   I         +R   +   G   + AD + IE  +LA ++G+    +AF  G
Sbjct: 640 SKDPNLQNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSGDPALCRAFREG 699

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T +  F V P  VT +QR I K +   + Y   A    +++   G+        
Sbjct: 700 EDVHRATGSLLFGVPPETVTPEQRRIAKTINFGVIYGMSAF---RLSRELGIPRKEAERF 756

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +        +       R   E     A E  ++                          
Sbjct: 757 INA------YFTTYAGVRAFIERTIAEAEEKGYV-------------------------- 784

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                        +  ++R +P +  +                  +  G  R  +NT   
Sbjct: 785 -----------TTLFGRKRPLPYITSRNKT---------------QKTGAERIAVNTP-- 816

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639
                           +Q    DI+   M++             ++L VHDE++ E P  
Sbjct: 817 ----------------IQGSGADIIKLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPE 860

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E    ++   M         +PL+ E
Sbjct: 861 ELEVMKRLVRERMEGVV--RLSVPLRVE 886


>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
          Length = 928

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/594 (16%), Positives = 185/594 (31%), Gaps = 89/594 (14%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD            + + LK  LE+     V  N  ++ +VL   
Sbjct: 371 SFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDAAKAKVGQNLKYDASVLARY 430

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              DI +       +L     N +         AL+         +++  +     T   
Sbjct: 431 ---DIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 487

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL                 E  L  +  
Sbjct: 488 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLS 537

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D       +  +     +L+++   +      +    ++L+  LF + GL 
Sbjct: 538 RIERTGVFIDEMKLSAQSVEITARLDELEKKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 596

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +   R                          
Sbjct: 597 VVKKTPSGTPSTNEEVLQELALDYPLPKLILEYR-------------------------- 630

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
                G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 631 -----GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAG 685

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    +  
Sbjct: 686 RRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGLDI 745

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 746 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 797

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            ++M++     A +  ++ T   R +    +  SR         +A       G A    
Sbjct: 798 MQYMEDTRST-AADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 855

Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           K+  + +    +++ N  + L       LV+    ++ S + +  ++L      
Sbjct: 856 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 909


>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
 gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
          Length = 944

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/537 (16%), Positives = 176/537 (32%), Gaps = 78/537 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+  +  +  N  F++ V+       I +       +L     + +         
Sbjct: 421 LKPLLEDDGIRKIGQNLKFDKGVMARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSL 477

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +     T + +                 Y   D  VT  + + 
Sbjct: 478 SERYLQHKTITFEEIAGKGKNQLTFDQI----------PLAQASVYAAEDADVTLRLHET 527

Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L      +QEL  + Q            I   G  +D  +    ++ +     +L+ +  
Sbjct: 528 LWAKLEPQQELRKVFQNIDMPLVPVLSRIERTGVLIDTTILAEHSRELTQRLAELEVQAH 587

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L   L+ +  L +   T      T + VL+      P    +  +
Sbjct: 588 ELA-GEAFNLSSPKQLGAILYEKLQLPVIKKTPKGAPSTNEEVLAELALDYPLPKLILEH 646

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P   R H   
Sbjct: 647 R-------------------------------GLAKLKSTYTDKLPQMINPLTRRVHTSY 675

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I         +R   IA EG +++ AD + IE R++A ++ 
Sbjct: 676 HQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRILAADYSQIELRIMAHLSR 735

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  G D++  T A  F +   +VT +QR   K +   L Y   A         
Sbjct: 736 DAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAF-------- 787

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            GL+        +       + +     +   E   + A++  ++ T  +  +      H
Sbjct: 788 -GLSRQLAIPRSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGYVST-LDGRRLYLPDIH 845

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           SR         +A       G A    K+  + +  +++++K  + +++     LV+
Sbjct: 846 SRNVNSRKAAERAAINAPMQGTAADIIKKAMIAIDAWLRQEKPLVTMLMQVHDELVF 902


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 116/697 (16%), Positives = 210/697 (30%), Gaps = 170/697 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENT 64
           D    GI  +     ++  +F    H        H             + + LK  LE+ 
Sbjct: 349 DTETTGIDAH--QAQLVGVSFAVQPHEAAYIPLTHAYIGVPDQLDRDTVLRALKPLLEDP 406

Query: 65  DVTIVAHNSYFERTVLKACFNLDIP-----IHRWICTLVLARS--NGLPSALKAVGEALK 117
               +  ++ F+  +L  C     P     +       +L     N   +       A K
Sbjct: 407 TKLKIGQHAKFDMNILANCAIDGDPAQGITVQGIAFDTMLESYVLNATATRHDMDSLAKK 466

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                    +++  +  K  T + +          A    G Y   D  VT  + + L  
Sbjct: 467 YLDYDTVSFQDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQELHA 516

Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                      L+  E  L  +   I  +G  VD  L    +  +  +  +L+++   + 
Sbjct: 517 QLAAIPSLASVLTDIEMPLVPVLARIERQGALVDAQLLGVQSIELGNKMVELERQAFEIA 576

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   L+ + G+ +   T      T + VL+   +      +V      
Sbjct: 577 -GEAFNLGSPKQLGAILYEKLGMPVLKKTGKGQASTAEDVLAKLAEDDYPLPKVL----- 630

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                    +Q+   S+         P Q  PR  R H    Q 
Sbjct: 631 -------------------------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +       +SDP+   I         +R   +A +G KL+ AD + IE R++A ++ ++ 
Sbjct: 666 VAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSKDEG 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF    D++  T A  F V   +VT DQR   K +   L Y  GA   QK+    G+
Sbjct: 726 LMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINFGLIYGMGA---QKLGKDIGV 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +  T                                             K       +R 
Sbjct: 783 DTKTA--------------------------------------------KAYIDVYFARY 798

Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             +   + +   Q  + G       +R  +P ++  K         P  R+         
Sbjct: 799 PGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNK---------PQERAAA------E 843

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
           R+ +N                     Q  + DI+ + M+              ++L VHD
Sbjct: 844 RTAINAPM------------------QGTAADIIKKAMVRVDNWLTASGLDAKVILQVHD 885

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           E+V E  +         +   M++       +PL  E
Sbjct: 886 ELVLEVREDLVAEVSEKVREHMSAAAQ--LDVPLLVE 920


>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1]
          Length = 922

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 103/591 (17%), Positives = 190/591 (32%), Gaps = 91/591 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALEN 63
           +D     +  Y     ++  +F  +          HD V  PQ L         +  LE+
Sbjct: 347 VDTETTSLD-YM-VAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILED 404

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
             +  V  N  ++ +VL    N  I +       +L     N + S     G ALK    
Sbjct: 405 AKLKKVGQNLKYDISVLA---NAGITLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 461

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +++  +  K  T   +          +      Y   D  +T  + + L P   K
Sbjct: 462 KNIAFEDIAGKGAKQLTFNQI----------SLETAAPYAAEDADITLRLHQHLWPRLEK 511

Query: 182 EQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           E EL            ++   I  +G  +D  L    ++ +  +  +L+ +   +  G  
Sbjct: 512 EAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQQSEELARKIDELETKAYDIA-GEK 570

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   F + G  +   T      T + VL       P    +  +R      
Sbjct: 571 FNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 626

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      ++         P     +  R H    Q     
Sbjct: 627 ---------------------------TKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 659

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA EG+K++ AD + IE R++A ++ +   L A
Sbjct: 660 GRLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNA 719

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F      VT +QR   K +   L Y   A     +A    +  N 
Sbjct: 720 FAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRNE 776

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      +       R+M+E     A +  ++ T   R +    +   R +   
Sbjct: 777 AQTYIDT-----YFARYPGVLRYMEETRA-SAADLGYVSTLFGR-RLYLPEIRDRNAMRR 829

Query: 522 NELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
               +A       G A  II +    +        +  + +++     LV+
Sbjct: 830 QAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVF 880


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/512 (18%), Positives = 172/512 (33%), Gaps = 77/512 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  F+R VLK     DI +       +L     N +         
Sbjct: 405 LKPLLEDPQAQKVGQNLKFDRGVLKRY---DIELQGIRFDTMLESYALNSVAGRHDMDTL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +  + K    +E+  +     T   +          A      Y   D  VT ++  +
Sbjct: 462 ASRWLNHKTVTFEEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHVK 511

Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   KEQ            L  +   I   G  +D  +  T +Q +     +L+ +  
Sbjct: 512 MWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDPGILATHSQELGSRLAELELKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF + G+     T     +T + VL+      P    +  +
Sbjct: 572 ELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEH 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P   R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPHSGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I         +R   IA +G ++V AD + IE R++A ++ 
Sbjct: 660 HQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQ 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF + +D++  T A  F V+  +V+ +QR   K +   L Y   A     ++  
Sbjct: 720 DKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAF---GLSRQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +        +E      ++M E+  E A +  ++ T  +  +       
Sbjct: 777 LNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAQKGYVST-LDGRRLYLPDIK 829

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +  +       +A       G A    KR  +
Sbjct: 830 ASNAMRRKAAERAAINAPMQGTAADIIKRAMI 861


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/599 (18%), Positives = 195/599 (32%), Gaps = 95/599 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL----- 57
           +  D ET + ID         A+   ++  +F             H  + +PQ L     
Sbjct: 381 IAFDSET-TSID---------AQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQLDRDAV 430

Query: 58  ----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
               K  LE+     V  ++ ++  VL    +  I +       +L     +   +    
Sbjct: 431 LNALKPILEDPAKAKVGQHAKYDINVLANA-STPIMVQGVAFDTMLESYVLDSTATRHDM 489

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169
              ALK  +      +++  +  K  T + +          A    G Y   D  VT   
Sbjct: 490 DSLALKYLNHSTIRFEDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRL 539

Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             E++ RLE +          E  L  +   I   G  VD  L    +  +  +  +L++
Sbjct: 540 HQELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELER 599

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           +   +  G   +    ++L   L+ + G  +   T      T + VL+   +   +  +V
Sbjct: 600 KAFEIA-GEEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDYELPKV 658

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                          +Q+   S+         P Q  PR  R H
Sbjct: 659 L------------------------------MQYRSLSKLKSTYTDKLPEQINPRTGRIH 688

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q +       +SDP+   I         +R   +A +G KL+ AD + IE R++A 
Sbjct: 689 TSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLMAADYSQIELRIMAH 748

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A ++  L AF    D++  T A  F V   QVT DQR   K +   L Y   A     +
Sbjct: 749 LAKDEGLLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMSAF---GL 805

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A    +        +    A               E+    A E  ++ T   R +    
Sbjct: 806 AKQIDVERKEAQAYIDRYFARYP------GVLTYMESTRAQAAEQGYVETVYGR-RLYLP 858

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLV 569
           + H++   +     +A       G A    KR  + +    +D      ++L     LV
Sbjct: 859 EIHAQNQAMRKGAERAAINAPMQGTAADIIKRAMIAVDGWLQDSGIDARIILQVHDELV 917


>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
 gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
          Length = 932

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/676 (16%), Positives = 214/676 (31%), Gaps = 167/676 (24%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  ++         HD            + + LK  LE+ +   V  N  ++ +VL   
Sbjct: 375 SFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKVGQNLKYDASVLARY 434

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              DI +       +L     N +         AL+         +E+  +  K  T   
Sbjct: 435 ---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQ 491

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIF----------KRLEPL-SSKEQELWYLDQ 190
           +          A      Y   D  +T  +           ++L+ + +  E  L  +  
Sbjct: 492 I----------ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLS 541

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +  +G  +D  L    +  +     +L++    +  G   +    ++L+T LF +  L 
Sbjct: 542 RMERKGVYIDDMLLSAQSLEIGQRLDELEKAAFEVA-GEEFNMNSPKQLQTILFEKMELP 600

Query: 251 LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +   T +    T + VL       P    +   R                          
Sbjct: 601 VIKKTPSGAASTNEEVLQELALDYPLPKLILEYR-------------------------- 634

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
                G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 635 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++ ++  L AF  G+D++  T A    V+ 
Sbjct: 690 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSI 749

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT + R   K +   L Y   A     +A   G+                   +A+++
Sbjct: 750 EEVTSEDRRRAKAINFGLIYGMSAF---GLAKQIGIPRG----------------EAQDY 790

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                E +P                                       Q +E  + ++A 
Sbjct: 791 MNVYFERYP------------------------------------GVMQYMEETR-LLAT 813

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           ++  V  +Y              GR L   ++ N R+ +        R+           
Sbjct: 814 EQGYVETLY--------------GRRLHLPEI-NARNGM-------RRKAAERA-AINAP 850

Query: 602 VQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTS 653
           +Q  + DI+ + M+          K   ++++ VHDE+V E  +   +   + +  LM  
Sbjct: 851 MQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQ 910

Query: 654 NPSWAKGLPLKAE-GY 668
                  +PL AE G+
Sbjct: 911 AVQ--LDVPLVAEAGF 924


>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
 gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
          Length = 912

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 116/686 (16%), Positives = 207/686 (30%), Gaps = 174/686 (25%)

Query: 5   FIDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP 54
            ID ET S I +           + G+  Y      I  A  + D P +L       ++ 
Sbjct: 338 SIDTETTSLIPMQAQLVGISLCCEPGVAAY------IPVAHHYQDVPQQL----SRELVL 387

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG 113
           + +K  LE+     V  N  ++  +     N  + +   +   +L         +     
Sbjct: 388 EKMKPWLEDASKAKVGQNLKYDSHI---FANHGVNLRGIVHDTLLESYVFESHRSHDMDS 444

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+  ++K    +E+    C     +          +       EY   D  +T ++ +
Sbjct: 445 LALRHLNRKTITFQEV----CGKGASQIG------FEQVEIGRATEYAAEDADITLQLHQ 494

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ P               E     + Q I   G  +D  L    +  +     +++Q  
Sbjct: 495 RMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNELGKRMLEIEQNA 554

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    +++    F +  L +       + +T + VL    +  P    +  
Sbjct: 555 YELA-EQPFNLNSPKQIGEIFFEKLKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKVLLE 613

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                               G S+         P    P   R H  
Sbjct: 614 YR-------------------------------GLSKLKSTYTDKLPKMIDPTTGRVHTN 642

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       ++DP+   I         +R   IA+ G  +V AD + IE R++A ++
Sbjct: 643 YAQAVAVTGRLASNDPNLQNIPIRNAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHIS 702

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L+AF  GED++  T A  F V    V  +QR   KV+   L Y   A     +A 
Sbjct: 703 GDENMLQAFADGEDIHRATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMSAF---GLAG 759

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+  +     ++       +       R+M E   E                      
Sbjct: 760 NLGIERSAAQSYIE-----RYFHRFAGVKRYMDETRLE---------------------- 792

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572
                           +     + +  R+                 L LP   S    R 
Sbjct: 793 ---------------AKARGYVQTVFGRR-----------------LWLPEINSPNGPRR 820

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVL 626
            G  R+ +N                     Q  + D++   M+         K    +++
Sbjct: 821 QGAERAAINAPM------------------QGTAADLIKLAMIAVQGWLETEKLQSKMIM 862

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLM 651
            VHDE+V E P+T+       L  LM
Sbjct: 863 QVHDELVLEVPETELPLVREKLPELM 888


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 96/599 (16%), Positives = 190/599 (31%), Gaps = 94/599 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFD------------DHPVELWDCVHDPVMPQVLKEALE 62
           D    G+      +  + F++  D              P    D V      ++L   L 
Sbjct: 316 DTETTGLDPMQASLVGMSFSYEADRAFYAPLTHDYLGAP----DQVGVEKALEILGPVLS 371

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSS 120
           N ++  +  N  ++  VL         +       ++A     P   +      A++L  
Sbjct: 372 NPEIKKIGQNIKYDWIVLARH---GADLQGVAFDTMVASYLLNPSHRSHGLDQIAMELLE 428

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +M   +E+  +  K  T   +                 Y   D  VT +I+  L+P   
Sbjct: 429 HRMISYEEVCGKGAKAITFNQV----------PLEKAVPYACEDADVTFQIYGLLQPKLE 478

Query: 181 K----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           K          E  L  +   +   G  VD      L++         ++E+  L  G  
Sbjct: 479 KNQLLELFKTVEMPLVRVLVKMEMEGITVDSDQLQALSKEFQGGMESAEKEIYQLA-GEE 537

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
            +    ++L   LF + GL ++  T+      T  +VL++          +   R     
Sbjct: 538 FNIASPQQLGHILFEKLGLPVQKKTKKKTGYSTDVKVLTTLASQHELPALILRYR----- 592

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                       ++              P   R H   +Q +T 
Sbjct: 593 --------------------------SVAKLKSTYVDALQSLIHPETGRVHTSFNQNVTA 626

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +S+P+   I         +R   I  +G ++  AD + IE R+LA ++ +++ ++
Sbjct: 627 TGRLSSSNPNLQNIPIRTPEGKRIREAFIPRKGWEMFCADYSQIELRILAHLSQDEFLIE 686

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            F++GED++  T +  F + P  VT + R   K +   + Y  GA    ++++  G++  
Sbjct: 687 LFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAINFGIIYGMGAF---RLSNEIGVSRK 743

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
           T    +                +   E     A E     T   R +      +++   L
Sbjct: 744 TAQRYIDNYFV------TYKGVKKFIEETIALAHETGMTKTLLGRTRP-LPDINAKNRVL 796

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRS 578
                +    T   G A    K   + +    +++N    ++L     LV+        
Sbjct: 797 MEAAERIATNTPIQGTAADLIKVAMIKVQNALEEQNMQTKMLLTVHDELVFESPPEEIF 855


>gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 384

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 146/368 (39%), Positives = 185/368 (50%), Gaps = 55/368 (14%)

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----------- 403
           D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF            
Sbjct: 24  DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGT 83

Query: 404 -----------------------------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                                         G+D+Y   YA SF +AP  VTK+QR IGKV
Sbjct: 84  WHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 143

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHA 493
            ELALGY GG  AF   A+   ++L   A   +    P   ++A    +W + N  P   
Sbjct: 144 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFG 201

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           + D     AC+  K+AWR  H  ++  W  L  A    I + +            + M+ 
Sbjct: 202 LSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQY 255

Query: 554 DKNNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607
            +  L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSR
Sbjct: 256 SRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSR 315

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           D+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG
Sbjct: 316 DVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 375

Query: 668 YESKRYRK 675
           +++ RYRK
Sbjct: 376 FQTHRYRK 383


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
          Length = 1047

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 118/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115
            LK  LE+     V  N  ++ +VL       I +  +  T++++               A
Sbjct: 521  LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPFDDTMLISYVLDAGKGGHGMDELA 577

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174
             +    +     ++               RNK    R A      Y   D  VT  +++ 
Sbjct: 578  RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 626

Query: 175  LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            ++P    E            L  +   +   G  +D  +   L+        +L++E++ 
Sbjct: 627  MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               G        +++   LF + GL     T +      ++  +   QA      +    
Sbjct: 687  DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                   L +   S+                 +R H       T
Sbjct: 742  ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  +SDP+   I         +R   +A EGKKL+ AD + IE R+LA +A      
Sbjct: 780  TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +AFE G D++  T +  F VA  Q+T D R   K +   + Y   A     +A   G+  
Sbjct: 840  EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
               +  +K     E +    ++                      +  K++ R+K   V+ 
Sbjct: 897  EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            L+  +                         Y +   NN     PS R+ V       R  
Sbjct: 933  LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            +N   +         G   + I +A++R    E  + A K    ++L VHDE+V E PD 
Sbjct: 959  INAPIQ---------GTAADIIRRAMTR---MEDALEAKKLTARMLLQVHDELVFEVPDD 1006

Query: 640  D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            + E    ++  +M   P+ A  L  PL  E 
Sbjct: 1007 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 97/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62
           D ET   ID  K G+         +  +F   ++         +      + +    AL+
Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 402

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           N     +  N  F+  VL+     ++ +   +   ++A     P         A      
Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           +    +ELI      +    L  RN P          EY   D  VT ++     P   K
Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADVTLKLKNYFAPELKK 510

Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           E            L Y+   +   G  +D       +  +     KL+QE+  L  G   
Sbjct: 511 EGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GTEF 569

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    +++   LF    L      T+T    T + VL   +   P   ++          
Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLE-------- 621

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                  + G  +         P    P+  + H   +Q +T  
Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I     +   +R   I          AD + IE R++A ++G+   ++
Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIE 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++G D++  T A+ + +   +VT D R   K     + Y         +A   G+  +
Sbjct: 719 AFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L+        +       +   E   + A E  ++ T  +R K+     +S  + +
Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLPDINSHNAVV 828

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
                +        G A    K   V +    +++     ++L     L +      
Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 885


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 118/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115
            LK  LE+     V  N  ++ +VL       I +  +  T++++               A
Sbjct: 521  LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPFDDTMLISYVLDAGKGGHGMDELA 577

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174
             +    +     ++               RNK    R A      Y   D  VT  +++ 
Sbjct: 578  RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 626

Query: 175  LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            ++P    E            L  +   +   G  +D  +   L+        +L++E++ 
Sbjct: 627  MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               G        +++   LF + GL     T +      ++  +   QA      +    
Sbjct: 687  DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                   L +   S+                 +R H       T
Sbjct: 742  ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  +SDP+   I         +R   +A EGKKL+ AD + IE R+LA +A      
Sbjct: 780  TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +AFE G D++  T +  F VA  Q+T D R   K +   + Y   A     +A   G+  
Sbjct: 840  EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
               +  +K     E +    ++                      +  K++ R+K   V+ 
Sbjct: 897  EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            L+  +                         Y +   NN     PS R+ V       R  
Sbjct: 933  LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            +N   +         G   + I +A++R    E  + A K    ++L VHDE+V E PD 
Sbjct: 959  INAPIQ---------GTAADIIRRAMTR---MEDALEAKKLTARMLLQVHDELVFEVPDD 1006

Query: 640  D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            + E    ++  +M   P+ A  L  PL  E 
Sbjct: 1007 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037


>gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T]
 gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6]
          Length = 605

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 105/619 (16%), Positives = 197/619 (31%), Gaps = 98/619 (15%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 32  DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 81

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 82  LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G ++         P    P+  R H   
Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 454 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 506

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573
           S          +A       G A    KR  + +  +++ ++  + +++     LV+   
Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 566

Query: 574 GNNRSYLNTTTRQLTREYT 592
            ++   +     QL    T
Sbjct: 567 KDDVDAVAKQIHQLMENCT 585



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
           Q  + DI+   M      + A +    +++ VHDE+V E   D  +  A  ++ LM 
Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 582


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 117/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115
            LK  LE+     V  N  ++ +VL       I +  +  T++++               A
Sbjct: 521  LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPFDDTMLISYVLDAGKGGHGMDELA 577

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174
             +    +     ++               RNK    R A      Y   D  VT  +++ 
Sbjct: 578  RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 626

Query: 175  LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            ++P    E            L  +   +   G  +D  +   L+        +L++E++ 
Sbjct: 627  MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               G        +++   LF + GL     T +      ++  +   QA      +    
Sbjct: 687  DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                   L +   S+                 +R H       T
Sbjct: 742  ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  +SDP+   I         +R   +A EGKKL+ AD + IE R+LA +A      
Sbjct: 780  TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +AFE G D++  T +  F VA  Q+T D R   K +   + Y   A     +A   G+  
Sbjct: 840  EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
               +  +K     E +    ++                      +  K++ R+K   V+ 
Sbjct: 897  EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            L+  +                         Y +   NN     PS R+ V       R  
Sbjct: 933  LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            +N   +         G   + I +A++R    E  + A +    ++L VHDE+V E PD 
Sbjct: 959  INAPIQ---------GTAADIIRRAMTR---MEDALEAKRLTARMLLQVHDELVFEVPDD 1006

Query: 640  D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            + E    ++  +M   P+ A  L  PL  E 
Sbjct: 1007 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 117/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115
            LK  LE+     V  N  ++ +VL       I +  +  T++++               A
Sbjct: 526  LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPFDDTMLISYVLDAGKGGHGMDELA 582

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174
             +    +     ++               RNK    R A      Y   D  VT  +++ 
Sbjct: 583  RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 631

Query: 175  LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            ++P    E            L  +   +   G  +D  +   L+        +L++E++ 
Sbjct: 632  MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 691

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               G        +++   LF + GL     T +      ++  +   QA      +    
Sbjct: 692  DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 746

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                   L +   S+                 +R H       T
Sbjct: 747  ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 784

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  +SDP+   I         +R   +A EGKKL+ AD + IE R+LA +A      
Sbjct: 785  TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 844

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +AFE G D++  T +  F VA  Q+T D R   K +   + Y   A     +A   G+  
Sbjct: 845  EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 901

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
               +  +K     E +    ++                      +  K++ R+K   V+ 
Sbjct: 902  EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 937

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            L+  +                         Y +   NN     PS R+ V       R  
Sbjct: 938  LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 963

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            +N   +         G   + I +A++R    E  + A +    ++L VHDE+V E PD 
Sbjct: 964  INAPIQ---------GTAADIIRRAMTR---MEDALEAKRLTARMLLQVHDELVFEVPDD 1011

Query: 640  D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            + E    ++  +M   P+ A  L  PL  E 
Sbjct: 1012 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1042


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 107/589 (18%), Positives = 201/589 (34%), Gaps = 89/589 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ---------VLKEALENT 64
           D     +  Y E   ++  +F             HD P  P           LK  LE+ 
Sbjct: 320 DTETTSLD-YLE-ARIVGVSFAVKAGEAAYLPLNHDYPGAPDQLDFDAVMADLKPLLEDP 377

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
               V  N  ++R VL    N DI +      T++ +      +        A K   + 
Sbjct: 378 TKLKVGQNLKYDRHVL---LNHDINLQGIAHDTMLESYVLDSTATRHDMDSLAKKYLDRD 434

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
               +++  +  K  T   +                 Y   D  +T ++ + L P     
Sbjct: 435 TIHFEDIAGKGKKQLTFNQI----------GLEEAAPYAAEDADITLQLHETLWPRIQAI 484

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                  S  E  L  +  T+   G  +D+ +  + +  +  +  +L+++    + G   
Sbjct: 485 PSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIAELEKQAHE-SAGQTF 543

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  L+ +  L ++  T      T + VL        +  Q+           
Sbjct: 544 NLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEEVLQGLADDGYELPQI----------- 592

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                               +Q+ G S+         P Q      R H    Q +T   
Sbjct: 593 -------------------IMQYRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAVTATG 633

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   +AS G  L+ AD + IE R++A ++G++  LKAF
Sbjct: 634 RLSSSDPNLQNIPIRSENGRRIREAFVASNGYTLLAADYSQIELRIMAHLSGDESLLKAF 693

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             GED++  T +  F++A   V+ DQR   K +   L Y   A     ++   G+  +  
Sbjct: 694 AAGEDIHRHTASEIFDIALEDVSSDQRRSAKAINFGLIYGMSA---HGLSKQLGIERHQA 750

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  ++T      + D     R   +N  E A E  ++ T   R +    + +S       
Sbjct: 751 ADYMQT------YFDRYPGVRQYMDNTREQAKEQGYVETIFGR-RLYLPEINSSNGMRRQ 803

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
              +        G A    KR  + +  ++ +    + +++     LV+
Sbjct: 804 YAERTAINAPMQGSAADIIKRAMIAIHSWLSEADTGIRMIMQVHDELVF 852


>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 896

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 114/686 (16%), Positives = 214/686 (31%), Gaps = 164/686 (23%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65
           ID     +        ++  +   ++         H     Q++KE         LEN  
Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382

Query: 66  VTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           +  +  N  ++ +VLK           D  +  ++      R +    ALK +G      
Sbjct: 383 IGKIGQNIKYDYSVLKNYGITLKGIGYDTMLESYVLNSGAGRHDMDSLALKYLG------ 436

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K    +++  +  K    + +               G Y   D  +T  +  +L P+ 
Sbjct: 437 -YKTISYEDVAGKGAKQLRFDQIPV----------VKAGIYAAEDADITLRLHHKLYPML 485

Query: 180 SK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +         E  L  +   +   G  +D  +       +  +   L+QE   L  G  
Sbjct: 486 DESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA-GKA 544

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L+  LF E  L +   T T       S  +        F+ R+ A       
Sbjct: 545 FNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA------- 592

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                            L++   S+         P +  P+  R H   +Q +       
Sbjct: 593 ---------------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLS 637

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +SDP+   I         +R+  IA EG  ++ AD + IE R++A ++ +   L+AF  G
Sbjct: 638 SSDPNLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANG 697

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T +  F      V+K+QR   K +   L Y   A     +A   G+        
Sbjct: 698 WDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER------ 748

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                     +DA+++       +P                            ++   + 
Sbjct: 749 ----------QDAQHYIDTYFRRYP----------------------------KVLEYME 770

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +  +Q  + G       RR               L LP                    +R
Sbjct: 771 RTRKQAHQLGYVETLFGRR---------------LYLP-----------------EINSR 798

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-P 637
            L R+           +Q  + DI+ + M+               +++ VHDE+V E   
Sbjct: 799 NLMRQKAAERTAINGPMQGTAADIIKKTMLAISSWEHSQKNPSAKMIMQVHDELVFEVRK 858

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPL 663
           +  E   ++++ LM         +PL
Sbjct: 859 EAVEECRAIIHKLMEQTVK--LSVPL 882


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 110/692 (15%), Positives = 211/692 (30%), Gaps = 156/692 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAE----DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
            +D ET S   L    +         + C I     +D  P +L D     ++ + L+  
Sbjct: 315 SVDLETTSLNPLEADIVGISLSFRDHEACYIPVGHAYDGAPAQL-DRT---LVLEGLRPL 370

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L +  V  V  N  ++  VL+      I +    C  ++A     P  S       A++ 
Sbjct: 371 LTDPAVRKVGQNLKYDYQVLRRH---GIVMAGVWCDTMVASYLINPVRSGHGLDSLAVEH 427

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +M   +E+  +                  R        Y   D      + +   P 
Sbjct: 428 LDHRMISYEEVAGKGKDQ----------LNFARVPVEKASTYSCEDADAAWLLHRLFLPR 477

Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            ++          E  L  +   +   G  +D+AL   L+  +  + T L++++ +L   
Sbjct: 478 VAEAGMERLFFDLEMPLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQVMALA-P 536

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
              +    ++L   LF +  L     T+T       +   ++L     ++          
Sbjct: 537 EPFNLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAA-------- 588

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                L++ G ++         P    P   R H   +Q +T+ 
Sbjct: 589 -------------------AILRYRGLAKLKSTYTDALPRLVHPASGRVHTSYNQTVTNT 629

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   IA EG  ++ AD + IE RVLA ++ ++    A
Sbjct: 630 GRLSSSEPNLQNIPVRTDEGRKIRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDA 689

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   ED++  T A  F + P  VT + R   K +   + Y  GA +    A   G+    
Sbjct: 690 FARDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSL---AKQLGIT--- 743

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                     +     +  +H       
Sbjct: 744 --------------------------------------TKVAKEFIDNYFARHPGARAFL 765

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           +       +       ++ R+   +P+  +     N+                  R+ +N
Sbjct: 766 DGCVAEA-EARGYVTTLMGRR---LPIPDIASSNGNIRAF-------------AQRNAVN 808

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
                               +Q  + DI+   M+              +++ VHDE+V E
Sbjct: 809 YP------------------IQGSAADIIKAAMVRVTERMRREGLTSRLIMQVHDELVFE 850

Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
            P+ +      L    M         +PL+A+
Sbjct: 851 VPEGERTAMERLVQHEMEHAAP--LRVPLRAD 880


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 96/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62
           D ET   ID  K G+         +  +F   ++         +      + +    AL+
Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEVAKVVERFSPALQ 402

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           N     +  N  F+  VL+     ++ +   +   ++A     P         A      
Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           +    +ELI      +    L  RN P          EY   D  +T ++     P   K
Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADITLKLKNYFAPELKK 510

Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           E            L Y+   +   G  +D       +  +     KL+QE+  L  G   
Sbjct: 511 EGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GTEF 569

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    +++   LF    L      T+T    T + VL   +   P   ++          
Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLE-------- 621

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                  + G  +         P    P+  + H   +Q +T  
Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I     +   +R   I          AD + IE R++A ++G+   ++
Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIE 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++G D++  T A+ + +   +VT D R   K     + Y         +A   G+  +
Sbjct: 719 AFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L+        +       +   E   + A E  ++ T  +R K+     +S  + +
Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLPDINSHNAVV 828

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
                +        G A    K   V +    +++     ++L     L +      
Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 885


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 96/540 (17%), Positives = 176/540 (32%), Gaps = 79/540 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + L+  LE+  +  V  N  ++ +VL    N  I +   +   +L     N + S     
Sbjct: 396 EKLRPLLEDAKIKKVGQNLKYDISVLA---NAGIKLQGVVFDTMLESYVFNSIASRHDMD 452

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G ALK    K    +++  +  K  T   +                 Y   D  +T  + 
Sbjct: 453 GLALKYLGHKNIAFEDIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLH 502

Query: 173 KRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P   KE EL             +   I  +G  +D  L    +  +  +  +L+ +
Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+   F + G  +   T      T + VL       P    + 
Sbjct: 563 AYDIA-GEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVIL 621

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R                                 ++         P     +  R H 
Sbjct: 622 EHRSL-------------------------------TKLKSTYTDKLPLMVNAKTGRVHT 650

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q         +S+P+   I         +R   IA +G+K++ AD + IE R++A +
Sbjct: 651 SYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHL 710

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   LKAF  G+D++  T A  F      VT +QR   K +   L Y   A     +A
Sbjct: 711 SQDAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAF---GLA 767

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +  N     + T      +       R+M+E     A E  ++ T   R +    +
Sbjct: 768 RQLDIPRNEAQTYIDT-----YFARYPGVLRYMEETRA-SAAELGYVSTLFGR-RLYLPE 820

Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              R +       +A       G A  II +    +        +  + +++     LV+
Sbjct: 821 IRDRNAMRRQAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVF 880


>gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus influenzae 10810]
          Length = 935

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 89/550 (16%), Positives = 177/550 (32%), Gaps = 74/550 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 414 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 471

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 472 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 521

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 522 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 581

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 582 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 639

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 640 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 669

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 670 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 729

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 730 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 786

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +      + +   + F   ++E        +   G             +S 
Sbjct: 787 ISRPDAQKYMD--LYFQRYPSVQQFMTDIREKAKTQGYVETLFGRRL-----YLPDINSS 839

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +       +        G A    KR  + L  +     N+ +++     LV+      
Sbjct: 840 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIHHDPNIEMIMQVHDELVFEVRSEK 899

Query: 577 RSYLNTTTRQ 586
            ++     +Q
Sbjct: 900 VAFFREQIKQ 909


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 103/579 (17%), Positives = 180/579 (31%), Gaps = 90/579 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEALENT 64
           D    GI   A+   ++  +F    H        H        + +      LK  LE+ 
Sbjct: 347 DTETTGID--AQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRDTVLLALKPLLEDP 404

Query: 65  DVTIVAHNSYFERTVLKAC-----FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
               V  ++ F+  +L  C         I +       +L     N   +       A K
Sbjct: 405 TKLKVGQHAKFDMNILANCAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDSLAKK 464

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175
                    +++  +  K  T + +          A    G Y   D  VT  + + L  
Sbjct: 465 YLDYDTVAFQDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQALFA 514

Query: 176 ---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                      L+  E  L  +   I  +G  VD  L    +  +  +  +L+++   + 
Sbjct: 515 QLSAIPSLASVLTDIEIPLVPVLARIERQGALVDKDLLGIQSIELGNKMVELERQAFEIA 574

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   L+ + GL +   T      T + VL+   +      +V      
Sbjct: 575 -GEEFNLGSPKQLGAILYEKLGLPVLKKTGKGQASTAEEVLAKLAEDDYPLPKVL----- 628

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                    +Q+   S+         P Q  PR  R H    Q 
Sbjct: 629 -------------------------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 663

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +       +SDP+   I         +R   IA +G K++ AD + IE R++A ++ ++ 
Sbjct: 664 VAATGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPKGYKMLAADYSQIELRIMAHLSKDEG 723

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF    D++  T A  F V    VT DQR   K +   L Y  GA   QK+    G+
Sbjct: 724 LMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGA---QKLGKDIGV 780

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +  T    +    A   +     +    +    +    + F G             HS  
Sbjct: 781 DTKTAKAYIDVYFAR--YPGVREYMERTRAQASDQGYVETFFGRRL-----YLPDIHSNK 833

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            +      +        G A    K+  V +     D  
Sbjct: 834 PQERAAAERTAINAPMQGTAADIIKKAMVLVDNWLTDSG 872


>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
          Length = 930

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 93/552 (16%), Positives = 176/552 (31%), Gaps = 83/552 (15%)

Query: 47  CVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
                 +P+      +K  LE+     V  N  F+R +L+   N  I +       +L  
Sbjct: 392 LDAPDQIPRDRVLELMKPVLEDDKALKVGQNLKFDRGILQ---NYGIELRGIAFDTMLES 448

Query: 102 S--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              + +         + +    K    +E+  +     T   +          A    G 
Sbjct: 449 YILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGR 498

Query: 160 YCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLN 208
           Y   D  VT ++  ++ P   K           E  L  +   I   G  +D  + H  +
Sbjct: 499 YAAEDADVTLQLHLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDPTVLHNHS 558

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS 264
             +    T+L+Q+   L  G   +    ++L+T LF + G+     T     +T + VL 
Sbjct: 559 GELAQRLTELEQKAHELA-GEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLE 617

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                 P    +                                Q+ G ++         
Sbjct: 618 ELALDYPLPKVIL-------------------------------QYRGLAKLKSTYTDKL 646

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379
           P    P+  R H    Q +       ++DP+   I         +R   IA +   +V A
Sbjct: 647 PLMINPKTGRVHTSYHQAVAATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSA 706

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +   L
Sbjct: 707 DYSQIELRIMAHLSRDKGLLTAFAEGQDIHRATAAEVFGLPLESVTNEQRRSAKAINFGL 766

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y   A     ++    +        +      E +     +    +    E    +   
Sbjct: 767 IYGMSAF---GLSRQLNIPRKESQKYMD--LYFERYPGVLEYMERTRAQAKEKGYVETLD 821

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNL 558
           G              S  +       +A       G A    KR  + +  +++K+K  +
Sbjct: 822 GRRL-----YLPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLEKEKPRV 876

Query: 559 ILMLPSGRSLVY 570
            +++     LV+
Sbjct: 877 KMIMQVHDELVF 888


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 112/677 (16%), Positives = 197/677 (29%), Gaps = 158/677 (23%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--------- 57
           FE  S  D     +  Y     ++  +F  + +        HD P  P+ L         
Sbjct: 320 FELFS-FDTETTSLN-YM-QAEIVGVSFAVEYNKAAYVPLGHDYPGAPEQLDRDAVLNAL 376

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEA 115
           K  LE+T    V  +  +++ VL       I +       +LA    N +         A
Sbjct: 377 KPLLEDTGKAKVGQHLKYDKNVLARY---GIELKGIAHDTMLASYVLNSVAGRHDMDSLA 433

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +   +     +++  +  K  T   +                 Y   D  +T ++ + L
Sbjct: 434 ERYLDRHTVHYEDIAGKGAKQLTFNQI----------DLEQAAPYAAEDADITLQLHREL 483

Query: 176 EPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P    E  L  + Q            I   G  VD    +  +Q +     + ++   +
Sbjct: 484 WPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEGMRQAEEAAHN 543

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              G   +    ++L+  LF + GL +   T            +                
Sbjct: 544 EA-GESFNLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGHPLPQW---- 598

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                  L++   S+         P     +  R H    Q + 
Sbjct: 599 ----------------------ILRYRALSKLKSTYTDKLPQLIDSKTGRVHTSYHQAVA 636

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R   +A  G K++ AD + IE R++A ++G++  +
Sbjct: 637 ATGRLSSSDPNLQNIPIRSEEGRRIREAFVAEPGHKILAADYSQIELRIMAHLSGDETLI 696

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G D++  T +  F V   +V  +QR   K +   L Y   A     +A   G++ 
Sbjct: 697 RAFKEGRDIHQATASEVFGVPLDEVESEQRRRAKAVNFGLIYGMSAF---GLAKQLGISR 753

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 V T                                               R   
Sbjct: 754 GEAQGYVDTYF--------------------------------------------ERYPG 769

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRS 578
           + + + +  EQ  E G       RR               L LP  +S    R     R+
Sbjct: 770 VRDYMERTREQAREQGYVETEFGRR---------------LYLPEIQSRNVPRRQHAERT 814

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEI 632
            +N                     Q  + DI+   M+    A         +V+ VHDE+
Sbjct: 815 AINAPM------------------QGTAADIIKRAMIAIHDALEKELPDVRMVMQVHDEL 856

Query: 633 VCETPDTDEFNASMLYH 649
           V E P+        L  
Sbjct: 857 VFEVPEDQAKQTQALVE 873


>gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 677

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  D+         HD            + + LK  LE+     V  N  ++ +VL   
Sbjct: 120 SFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY 179

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               I +       +LA    N +         AL+         +++  +     T   
Sbjct: 180 ---GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 236

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190
           +                 Y   D  VT  +  RL       E L       E  L  +  
Sbjct: 237 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLS 286

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  +D       +  +     +L+Q+   +      +    ++L+  LF + GL 
Sbjct: 287 RIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 345

Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +       T +T + VL       P    +   R                          
Sbjct: 346 VVKKTPSGTPSTNEEVLQELALDYPLPKLILEYR-------------------------- 379

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
                G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 380 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 434

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V+ 
Sbjct: 435 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 494

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            QV+ +QR   K +   L Y   A     +A   G+        +      + +E     
Sbjct: 495 DQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 546

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            ++M E+    A +  ++ T   R +    +  SR         +A       G A    
Sbjct: 547 MQYM-EDTRSAAADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 604

Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           K+  + +    +++ N  + L       LV+    ++ S + +  ++L      
Sbjct: 605 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 658


>gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T]
          Length = 714

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 152/709 (21%), Positives = 228/709 (32%), Gaps = 172/709 (24%)

Query: 5   FIDFETRSP---------------------IDLTKCGICKYAEDVCVILFAFGFD--DHP 41
             DFET S                        +   G   YAE     +    +D  D  
Sbjct: 36  SFDFETYSEAGFVINPETGKVHTAAKTGNKNGIALVGTPVYAEHPSTEILCLYYDLKDGK 95

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICT 96
                    P  P  L E + N      A N  FE  +             + + +  C 
Sbjct: 96  GRRAYIPGGPK-PTDLIEHIANGGPIA-AWNITFEFWIWNMVLAKREGWPWLQLEQCYCD 153

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHREA 153
           +  AR   LP +L A  +ALK +S K ++GK+LI + C+         L         + 
Sbjct: 154 MAKARRFSLPGSLDAAAQALK-TSPKDKKGKQLINKLCRPVSATKARPLPRWTLYTAPQD 212

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           +     YC  DV     +      ++  E+E W  DQ IN RG  VDV        IVD 
Sbjct: 213 YSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLDNALDIVDQ 272

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
              +   EL ++T G V S   + K+  +L    G  + +LT  +    L  +  L P A
Sbjct: 273 TTRRFTMELAAITNGAVGSVSEVAKMTDFL-AGLGCRMHNLTADSVSEALERD-DLNPTA 330

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +V   R   + + V KL +L   ++SDGRLR    F GA  TGRWS      QNL    
Sbjct: 331 RRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGA-GTGRWSAGGVQLQNLTSKG 389

Query: 334 RSHEELDQIITHLPTSITSD---------------------------------------- 353
              +  +     +  + T +                                        
Sbjct: 390 PKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALKDLTHRNLD 449

Query: 354 ------PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  DP+ ++S C+R   IA+ GKK V  D + IEA VLA +A  +W+L+ F T   
Sbjct: 450 LIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRTHGK 509

Query: 408 LYVTTYARSFNVAPAQVT----------KDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           +Y  + ++   V   ++             ++++GKV ELA GY G   A++   +    
Sbjct: 510 IYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWKAFGAEAHF 569

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             +                                           ++    WR     +
Sbjct: 570 ADDD----------------------------------------EMKKAILGWRDASPEI 589

Query: 518 SELWN-----------------ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
            E W                   L  A    I N       K   V  +      + L  
Sbjct: 590 VEFWGGQYRRDPFTRKWTKEYFGLEGAAIMAILNP-----GKCYAVHDITYAVHDDVLYC 644

Query: 561 MLPSGRSLVYRDVGN-----------NRSYLNTTTR------QLTREYT 592
            LPSGR L Y                  +++   T          R  T
Sbjct: 645 RLPSGRFLQYHQPRLVESDSWKGPEYQITFMGYNTNSQKGPVGWVRMDT 693


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 117/631 (18%), Positives = 204/631 (32%), Gaps = 134/631 (21%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115
            LK  LE+     V  N  ++ +VL       I +  +  T++++               A
Sbjct: 521  LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPFDDTMLISYVLDAGKGGHGMDELA 577

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174
             +    +     ++               RNK      A      Y   D  VT  +++ 
Sbjct: 578  RRHLGHQPITFADVA-----------GTGRNKVTFDHVAIDKATAYAAEDADVTLRLWRM 626

Query: 175  LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            ++P    E            L  +   +   G  +D  +   L+        +L++E++ 
Sbjct: 627  MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               G        +++   LF + GL     T +      ++  +   QA      +    
Sbjct: 687  DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                   L +   S+                 +R H       T
Sbjct: 742  ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  +SDP+   I         +R   +A EGKKL+ AD + IE R+LA +A      
Sbjct: 780  TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +AFE G D++  T +  F VA  Q+T D R   K +   + Y   A     +A   G+  
Sbjct: 840  EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
               +  +K     E +    ++                      +  K++ R+K   V+ 
Sbjct: 897  EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            L+  +                         Y +   NN     PS R+ V       R  
Sbjct: 933  LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            +N   +         G   + I +A++R    E  + A K    ++L VHDE+V E PD 
Sbjct: 959  INAPIQ---------GTAADIIRRAMTR---MEDALEAKKLTARMLLQVHDELVFEVPDD 1006

Query: 640  D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            + E    ++  +M   P+ A  L  PL  E 
Sbjct: 1007 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037


>gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp]
 gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp]
          Length = 931

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 107/599 (17%), Positives = 195/599 (32%), Gaps = 95/599 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL----- 57
           +  D ET + ID         A+   ++  +F             H  + +PQ L     
Sbjct: 352 IAFDSET-TSID---------AQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQLDRDAV 401

Query: 58  ----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
               K  LE+     V  ++ ++  VL    +  I +       +L     +   +    
Sbjct: 402 LKALKPILEDPAKAKVGQHAKYDINVLANA-STPIAVQGVAFDTMLESYVLDSTATRHDM 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169
              ALK         +++  R  K  T + +          A    G Y   D  VT   
Sbjct: 461 DSLALKYLGHSTIRFEDIAGRGAKQLTFDQI----------ALEQAGPYAAEDADVTLRL 510

Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             E++ RLE +          E  L  +   I   G  VD  L    +  +  +  +L++
Sbjct: 511 HQELWGRLEAVPSLAKVLREIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELER 570

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           +   +  G   +    ++L   L+ + G  +   T      T + VL+   +   +  +V
Sbjct: 571 KAFEIA-GEEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDFELPKV 629

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                          +Q+   S+         P Q  PR  R H
Sbjct: 630 L------------------------------MQYRSLSKLKSTYTDKLPEQINPRTGRIH 659

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q +       +SDP+   I         +R   +A +G K++ AD + IE R++A 
Sbjct: 660 TSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKMMAADYSQIELRIMAH 719

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A ++  L AF    D++  T A  F VA  +VT DQR   K +   L Y   A     +
Sbjct: 720 LAKDEGLLDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSAF---GL 776

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A    +        +    A   +    ++    +    E    +   G           
Sbjct: 777 AKQIDVERKEAQAYIDRYFAR--YPGVLSYMERTRAQAAEQGYVETVFGRRL-----YLP 829

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLV 569
           + H++   +     +A       G A    KR  + +  +++    +  ++L     LV
Sbjct: 830 EIHAQNQAMRKGAERAAINAPMQGTAADIIKRAMIAVDDWLQGSGIDARIILQVHDELV 888


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 96/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62
           D ET   ID  K G+         +  +F   ++         +      + +    AL+
Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 402

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           N     +  N  F+  VL+     ++ +   +   ++A     P         A      
Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           +    +ELI      +    L  RN P          EY   D  +T ++     P   K
Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADITLKLKNYFAPELKK 510

Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           E            L Y+   +   G  +D       +  +     KL+QE+  L  G   
Sbjct: 511 EGLESLFTTIEMPLIYVLAEMEATGVTLDTVALRQSSGELTASMNKLEQEVYELA-GTEF 569

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    +++   LF    L      T+T    T + VL   +   P   ++          
Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLE-------- 621

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                  + G  +         P    P+  + H   +Q +T  
Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I     +   +R   I          AD + IE R++A ++G+   ++
Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIE 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++G D++  T A+ + +   +VT D R   K     + Y         +A   G+  +
Sbjct: 719 AFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L+        +       +   E   + A E  ++ T  +R K+     +S  + +
Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLPDINSHNAVV 828

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
                +        G A    K   V +    +++     ++L     L +      
Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 885


>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
 gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Vibrio fischeri ES114]
          Length = 932

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 111/676 (16%), Positives = 214/676 (31%), Gaps = 167/676 (24%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F  ++         HD            + + LK  LE+ +   V  N  ++ +VL   
Sbjct: 375 SFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKVGQNLKYDASVLARY 434

Query: 84  FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              DI +       +L     N +         AL+         +E+  +  K  T   
Sbjct: 435 ---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQ 491

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIF----------KRLEPL-SSKEQELWYLDQ 190
           +          A      Y   D  +T  +           ++L+ + +  E  L  +  
Sbjct: 492 I----------ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLS 541

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +  +G  +D  L    +  +     +L++    +  G   +    ++L+T LF +  L 
Sbjct: 542 RMERKGVYIDDMLLSAQSVEIGQRLDELEKAAFEVA-GEEFNMNSPKQLQTILFEKMELP 600

Query: 251 LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +   T +    T + VL       P    +   R                          
Sbjct: 601 VIKKTPSGAASTNEEVLQELALDYPLPKLILEYR-------------------------- 634

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
                G ++         P    P   R H    Q +T      ++DP+   I       
Sbjct: 635 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G K++  D + IE R++A ++ ++  L AF  G+D++  T A    V+ 
Sbjct: 690 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSI 749

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT + R   K +   L Y   A     +A   G+                   +A+++
Sbjct: 750 EEVTSEDRRRAKAINFGLIYGMSAF---GLAKQIGIPRG----------------EAQDY 790

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                E +P                                       Q +E  + ++A 
Sbjct: 791 MNVYFERYP------------------------------------GVMQYMEETR-LLAT 813

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           ++  V  +Y              GR L   ++ N R+ +        R+           
Sbjct: 814 EQGYVETLY--------------GRRLHLPEI-NARNGM-------RRKAAERA-AINAP 850

Query: 602 VQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTS 653
           +Q  + DI+ + M+          K   ++++ VHDE+V E  +   +   + +  LM  
Sbjct: 851 MQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQ 910

Query: 654 NPSWAKGLPLKAE-GY 668
                  +PL AE G+
Sbjct: 911 AAQ--LDVPLVAEAGF 924


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 178/697 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59
           D    G+   + ++  + FA                D P +L   W           LK 
Sbjct: 38  DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQ-------LKP 90

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117
            LE+     V  N  F++++L       I +       +L     + +         A +
Sbjct: 91  LLEDDKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 147

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + K    +E+  +     T   +          A    G Y   D  VT ++   L P
Sbjct: 148 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 197

Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D  +    ++ + +   +L+++   L 
Sbjct: 198 KLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILVAHSKELTIRLDELEKQAHELA 257

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  L+ +  L +   T     +T + VL+      P    +   R  
Sbjct: 258 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 314

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G ++         P    P   R H    Q 
Sbjct: 315 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 345

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      + DP+   I         +R   IA EG +++ AD + IE R++A ++ ++ 
Sbjct: 346 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKG 405

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F ++  +VT +QR   K +   L Y   A     +A    +
Sbjct: 406 LLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 462

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                                             +       R 
Sbjct: 463 PRGEAQ--------------------------------------------RYMDLYFERY 478

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             +   + +  +Q  E G                             GR L   D+ +  
Sbjct: 479 PGVLEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 513

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630
              N T R+               +Q  + DI+   M+               +++ VHD
Sbjct: 514 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHD 566

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           E+V E  ++   +A   +  LM  +   A  +PLK +
Sbjct: 567 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 601


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/625 (16%), Positives = 190/625 (30%), Gaps = 151/625 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN D+  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPDIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    +    + +  +     T   +                EY   D  VT ++ + L 
Sbjct: 467 RYLGHETIAFESIAGKGKNQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516

Query: 177 PLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               +E             L ++   +   G  +D       +  +    T L+++   L
Sbjct: 517 LKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQAYEL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPILQKTPKGAPSTNEEVLEELAYSHELPKILVEHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++    
Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLD 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                                           + Q++  
Sbjct: 782 ISRPDAKKYM-----------------------------------------DLYFQRYPS 800

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575
           V +   ++ +  +      + +  R+                 L LP   S    R  G 
Sbjct: 801 VQQFMTDIREKAK-AQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----DIVLTVHD 630
            R  +N                     Q  + DI+   M+   +  Y     ++++ VHD
Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKLDEVIYHDPDIEMIMQVHD 884

Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654
           E+V E   +  EF    +   M   
Sbjct: 885 ELVFEVRSEKVEFFREQIKQQMEDA 909


>gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2]
          Length = 935

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 116/699 (16%), Positives = 208/699 (29%), Gaps = 178/699 (25%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           +D     +  Y E   ++  +F  +          HD P  P  L         K  LE+
Sbjct: 360 VDTETTSVN-YME-AELVGVSFCIEPGAAAYVPVAHDYPDAPTQLSRDYVLSALKPILES 417

Query: 64  TDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
             +  V  +  +++ VL            D  +  ++      R +    AL  +G    
Sbjct: 418 ETIIKVGQHIKYDKNVLAHYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLG---- 473

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIFK 173
               K    +E+  +  K  T   +               G Y   D  +T      I+ 
Sbjct: 474 ---HKTIHFEEIAGKGAKQLTFNQI----------GLEEAGPYAAEDADITMRLHQAIWA 520

Query: 174 RLEP-------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           +LE        L   E  +  +   +  +G  ++       +Q +     +L++E+    
Sbjct: 521 KLENEPKLKALLVDVEVPVACVLSRMEQQGVLIESQRLRQQSQDLATRIAELEKEVHEEA 580

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G V +    ++L+  LF +  L +   T      T + VL       P   ++   R  
Sbjct: 581 -GEVFNLGSPKQLQHILFEKMSLPVIKKTPKGAPSTSEEVLQELALEFPLPKKLMEYR-- 637

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G ++         P     R  R H    Q 
Sbjct: 638 -----------------------------GLTKLKNTYTDKLPKMINHRTGRVHTSYHQA 668

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           IT      ++DP+   I         VR   +  EG K+V AD + IE R++A ++G++ 
Sbjct: 669 ITATGRLSSTDPNLQNIPIRNEEGRKVRQAFVPREGYKIVAADYSQIELRIMAHLSGDEG 728

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G D++  T A  F V   +VT +QR   K +   L Y   A     +A    +
Sbjct: 729 LLDAFAHGRDIHKATAAEVFGVTLDEVTTEQRRSAKAINFGLIYGMSAF---GLAKQLNI 785

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             +     +        + +         ++  E A                        
Sbjct: 786 PRHEAQKYMD------LYFERYPGVLEYMDSTREGAK----------------------- 816

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNN 576
                   + + +T+   +                       L LP  ++    R  G  
Sbjct: 817 -------EKGYVETVFGRR-----------------------LYLPDIKASNGARRKGAE 846

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629
           R+ +N                     Q  + DI+   M+               +++ VH
Sbjct: 847 RAAINAPM------------------QGTAADIIKMAMIKVDDWITSLESDDVLMMMQVH 888

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           DE+V E  +   E     +  LM         +PL  + 
Sbjct: 889 DELVFEIREEHLEEQVKNIVSLMEQAAV--LNVPLVVDA 925


>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
 gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
          Length = 921

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 112/646 (17%), Positives = 193/646 (29%), Gaps = 160/646 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE      V  N  ++  +L+      I +   +   +LA    N + S     
Sbjct: 393 EQLKPLLEAEKPQKVGQNLKYDSHILRRY---KIRLAGILNDTMLASYVFNSVGSRHDMD 449

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             +L   + K    +++  +  K  T   +          A    G Y   D  +T  + 
Sbjct: 450 TLSLHYLNHKTISFEDIAGKGAKQLTFNQI----------ALEQAGPYAAEDADITYRLH 499

Query: 173 KRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             L              L+  E  L  +   +   G  +D  L    +Q +  +   L++
Sbjct: 500 DVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRIDANLLGKQSQEIAEKLDALEK 559

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           +   +  G   +    ++L+   F +  L +   T      T + VL       P    +
Sbjct: 560 KAFEIA-GEEFNLGSPKQLQRIFFEKLELPIVKKTPKGAPSTAEEVLHELAHDYPLPDVI 618

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                           Q  G S+         P    P   R H
Sbjct: 619 L-------------------------------QHRGLSKLKSTYTDKLPKMINPDTGRVH 647

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q +T      ++DP+   I         VR   I  +G K+V  D + IE R++A 
Sbjct: 648 TSYQQAVTATGRLSSTDPNLQNIPIRTAEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAH 707

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++  LKAF  G D++  T A  F     +V+ DQR   K +   L Y   A     +
Sbjct: 708 LSQDESLLKAFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVNFGLIYGMSAF---GL 764

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   G+  +   H                                               
Sbjct: 765 ARQLGIARHEAQHY--------------------------------------------MD 780

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-Y 570
           +   R   +   +    +Q  E G       RR               L LP  ++    
Sbjct: 781 KYFERFPGVLRYMEDTRKQAKEQGYVKTLFGRR---------------LPLPDIKASNGA 825

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--------KAGY 622
           R  G  R+ +N                     Q  + DI+ + M+           +   
Sbjct: 826 RRKGAERAAINAPM------------------QGTAADIIKKAMLKVADWIDSNNCQDDV 867

Query: 623 DIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEG 667
            +++ VHDE+V E  ++   +    L  +M    S    +PL AE 
Sbjct: 868 RMLMQVHDELVFEIKESKLTDYIEQLTEVMEKAAS--LDVPLIAEA 911


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/634 (17%), Positives = 202/634 (31%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 396 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVEGVAFDTMLESYTLNSTGRHNMDEL 452

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 453 ADRYLGHKTIEFEEIAGKGKNQLTLDKI----------AIDVASQYAAEDADVTMKLHQV 502

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   K           E  L  +   I   G  +D       +  ++    +L+Q + 
Sbjct: 503 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 562

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 563 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 621

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P     +  R H    Q +
Sbjct: 622 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 655

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA +G K+V AD + IE R++A +A ++  
Sbjct: 656 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 715

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 716 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 772

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +                                         + + Q++  V 
Sbjct: 773 RADAKKYM-----------------------------------------ERYFQRYPAVQ 791

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++  +            +  V  ++              GR L   ++ ++  
Sbjct: 792 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 823

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   KA        +++ VHDE+V
Sbjct: 824 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDDNIKMIMQVHDELV 876

Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 877 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 908


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/634 (16%), Positives = 203/634 (32%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LE+ DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTI---FANHGVQVEGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDIASQYAAEDADVTMKLHQV 540

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   K           E  L  +   I   G  +D       +  ++   ++L+Q + 
Sbjct: 541 LSPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P     +  R H    Q +
Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA +G K+V AD + IE R++A +A ++  
Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 753

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +                                         + + Q++  V 
Sbjct: 811 RADAKKYM-----------------------------------------ERYFQRYPAVQ 829

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++  +            +  V  ++              GR L   ++ ++  
Sbjct: 830 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   KA        +++ VHDE+V
Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDDNIKMIMQVHDELV 914

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 915 FEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIAE 946


>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 870

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 155/471 (32%), Gaps = 72/471 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+  V  V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +++  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P+  R H 
Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
               +        +      E +     +    +    E    +   G   
Sbjct: 775 RQLNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLEGRRL 823


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/634 (16%), Positives = 202/634 (31%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASKYAAEDADVTMKLHQV 540

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P            +  E  L  +   I   G  +D       +  ++    +L+Q + 
Sbjct: 541 LTPELDKTPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P     +  R H    Q +
Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA +G K+V AD + IE R++A +A ++  
Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 753

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +                                         + + Q++  V 
Sbjct: 811 RADAKKYM-----------------------------------------ERYFQRYPAVQ 829

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++  +            +  V  ++              GR L   ++ ++  
Sbjct: 830 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   KA        +++ VHDE+V
Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914

Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946


>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
 gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
          Length = 928

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/538 (16%), Positives = 177/538 (32%), Gaps = 76/538 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVG 113
           ++LK  LE+     V  N  ++R +L     +++    W  T++ + +   +        
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAW-DTMLESYTLDSVAGRHDMDS 460

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            + +    K    +E+  +     T   +               G Y   D  VT ++  
Sbjct: 461 LSERWLKHKTITFEEIAGKGKNQLTFNQI----------DLEQAGRYAAEDADVTLQLHL 510

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           ++ P   K           E  L  +   I   G  +D  +    ++ + +   +L+Q+ 
Sbjct: 511 KMWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVKIDPQVLQKHSEEITLRLAELEQKA 570

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +  G   +    ++L+T LF + G+     T     +T + VL       P    +  
Sbjct: 571 HDIA-GEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE 629

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                               G ++         P    P+  R H  
Sbjct: 630 YR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTS 658

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++
Sbjct: 659 YHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LKAF  G+D++  T A  F +    V+ +QR   K +   L Y   A     ++ 
Sbjct: 719 RDKGLLKAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINFGLIYGMSAF---GLSR 775

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +      E +     +    +    E    +   G             
Sbjct: 776 QLNIPRKESQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLEGRRL-----YLPDI 828

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
            S  +       +A       G A    KR  + +  ++++++  + +++     LV+
Sbjct: 829 KSSNAARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQEEQPRVRMIMQVHDELVF 886


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/540 (17%), Positives = 176/540 (32%), Gaps = 79/540 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + L+  LE+  +  V  N  ++ +VL    N  I +   +   +L     N + S     
Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLA---NAGIQLQGVVFDTMLESYVFNSVASRHDMD 452

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G ALK    K    +++  +  K  T   +                 Y   D  +T  + 
Sbjct: 453 GLALKYLGHKNIAFEDIAGKGAKQLTFNQI----------QLETAAPYAAEDADITLRLH 502

Query: 173 KRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P   KE EL             +   I  +G  +D  L    +  +  +  +L+ +
Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+   F + G  +   T      T + VL       P    + 
Sbjct: 563 AYDIA-GEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVIL 621

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R                                 ++         P     +  R H 
Sbjct: 622 EHRSL-------------------------------TKLKSTYTDKLPLMVNAKTGRVHT 650

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q         +S+P+   I         +R   IA +G+K++ AD + IE R++A +
Sbjct: 651 SYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHL 710

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   LKAF  G+D++  T A  F      VT +QR   K +   L Y   A     +A
Sbjct: 711 SQDAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAF---GLA 767

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +  N     + T      +       R+M+E     A E  ++ T   R +    +
Sbjct: 768 RQLDIPRNEAQTYIDT-----YFARYPGVLRYMEETRA-SAAELGYVSTLFGR-RLYLPE 820

Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              R +       +A       G A  II +    +        +  + +++     LV+
Sbjct: 821 IRDRNAMRRQAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVF 880


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/634 (16%), Positives = 203/634 (32%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASKYAAEDADVTMKLHQV 540

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P            +  E  L  +   I   G  +D       +  ++    +L+Q + 
Sbjct: 541 LVPELDKTPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P     +  R H    Q +
Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA +G K+V AD + IE R++A +A ++  
Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 753

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 754 ITAFAEGKDIHCATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +                                         + + Q++  V 
Sbjct: 811 RADAKKYM-----------------------------------------ERYFQRYPAVQ 829

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++  +            +  V  ++              GR L   ++ ++  
Sbjct: 830 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M++  KA        +++ VHDE+V
Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIDIDKAIRGDDNIKMIMQVHDELV 914

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 915 FEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIAE 946


>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
 gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
          Length = 927

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 116/699 (16%), Positives = 200/699 (28%), Gaps = 173/699 (24%)

Query: 6   IDFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           +D ET S   +     G+   AE      +     +   P +L           +L+  L
Sbjct: 353 LDTETDSLDPMRARLVGLSFAAEPGRAAYLPLGHDYPGAPAQL----GYEQALDLLRPLL 408

Query: 62  ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            +  V  +  +  ++  VL+        +  D  +  ++     AR +    AL+ +G  
Sbjct: 409 ADPAVRKIGQHGKYDLHVLRRHGVAVAGYADDTLLESFVLDSGNARHDMDSLALRHLGYT 468

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                              K E       R  P  + A      Y   D  +T  + + L
Sbjct: 469 TV-----------------KYEDICGKGVRQIPFSQCALDDATRYAAEDADITLRLHRVL 511

Query: 176 EPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                 E +L             + + I   G  VD+         +     +  +   +
Sbjct: 512 SARLQAEPQLQAVYRDIEMPLVQVLERIEANGVLVDMDELRRQGADLSRRMLEAQERATA 571

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L   LF E  L           +T +  L +   L           
Sbjct: 572 LA-GRSFNLDSPKQLCALLFDELKLPALVKTPKGQPSTNEEALEAIADLHELP------- 623

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   R  L++ G ++         P    P   R H    
Sbjct: 624 ------------------------RIILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYH 659

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q         +SDP+   I         +R   +A  G+KLV  D + IE R++A ++ +
Sbjct: 660 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPPGRKLVACDYSQIELRIMAHLSQD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF +G D++  T A  F     +VT ++R   K +   L Y  GA     +A   
Sbjct: 720 PGLLGAFASGADIHRATAAEVFGRPLEEVTVNERRAAKAINFGLMYGMGAF---GLARQL 776

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +    +           R   E   E A E  ++ T         R+ H 
Sbjct: 777 GIDRGQAQDYIALYFSRYP------GVRDYMERTREQARERGYVETVFG------RRLHL 824

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                 N   +A                                              G 
Sbjct: 825 EYINARNAAQRA----------------------------------------------GA 838

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629
            R+ +N                     Q  + DI+   M+              ++L VH
Sbjct: 839 ERAAINAPM------------------QGTAADIIKRAMIAVDAWIADHAQRARMLLQVH 880

Query: 630 DEIVCETPDT--DEFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E  +    E   S +  LM++       +PL  +
Sbjct: 881 DELVFEADEEFVPEL-VSRVPELMSAAGD--LSVPLVVD 916


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/608 (15%), Positives = 195/608 (32%), Gaps = 92/608 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59
           L +D ET S   +             ++  +F + ++         D      +    + 
Sbjct: 362 LSLDTETTSTDPIR----------AELVGMSFSYAENQAFYVPVPADRSEAQKIVDRFRP 411

Query: 60  ALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LK 117
             EN ++  V  N  ++  VL      L  P+   +    + +   L   +  + E  L 
Sbjct: 412 VFENREIMKVGQNIKYDMLVLANYGVQLQGPLFDTMVAHYVLQPE-LRHNMDYLAEIYLN 470

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +  +EE           +       R+ P          EY   D  VT ++  +LE 
Sbjct: 471 YQTIHIEE-------LIGPKGKNQGNMRDLPP-----ASVYEYACEDADVTLKLKNKLEK 518

Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G  +D       ++   +   ++++E+  L  
Sbjct: 519 ELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTEALKETSRHFTLRMKQIEEEVYQLA- 577

Query: 228 GLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
           G   +    +++   LF     +     T+T    T + VL S +       ++  +R  
Sbjct: 578 GTEFNIASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEVVGKILEHR-- 635

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G  +         P    P   R H   +Q 
Sbjct: 636 -----------------------------GLKKLLGTYIDALPQLINPETGRIHTSFNQT 666

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      +S+P+   I         +R   I  +G     AD + IE R++A ++G+  
Sbjct: 667 VTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPH 726

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF+ G+D++  T ++ + V   +VT++QR+  K     + Y         +A    +
Sbjct: 727 MIEAFQKGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIYGISVF---GLAERLNV 783

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +      L+        + +     +   +     A E  +I T  +R K+     +SR 
Sbjct: 784 DRKEAKELIDG------YFENYPHVKEYMDESIRIARERGYIETIFKR-KRYLPDINSRN 836

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + +     +        G A    K   V +     K++    ++L     L +  +   
Sbjct: 837 AVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFLKERIQSKMILQVHDELNFSVLPEE 896

Query: 577 RSYLNTTT 584
           +  +    
Sbjct: 897 QEKVKQIV 904


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62
           D ET   ID  K G+         +  +F   ++         +      + +    AL+
Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 402

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           N     +  N  F+  VL+     ++ +   +   ++A     P         A      
Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           +    +ELI      +    L  RN P          EY   D  VT ++     P   K
Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADVTLKLKNYFAPELKK 510

Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           E            L Y+   +   G  +D       +  +     KL+QE+  L  G   
Sbjct: 511 EGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GTEF 569

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    +++   LF    L      T+T    T + VL   +   P   ++          
Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLLE-------- 621

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                  + G  +         P    P+  + H   +Q +T  
Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I     +   +R   I          AD + IE R++A ++G+   ++
Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIE 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++G D++  T A+ + +   +VT D R   K     + Y         +A   G+  +
Sbjct: 719 AFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L+        +       +   E   + A E  ++ T  +R K+     +S  + +
Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLPDINSHNAVV 828

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
                +        G A    K   V +    +++     ++L     L +      
Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNIYKEE 885


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/540 (17%), Positives = 176/540 (32%), Gaps = 79/540 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + L+  LE+  +  V  N  ++ +VL    N  I +   +   +L     N + S     
Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLA---NAGIQLKGVVFDTMLESYVFNSVASRHDMD 452

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G ALK    K    +++  +  K  T   +                 Y   D  +T  + 
Sbjct: 453 GLALKYLGHKNIAFEDIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLH 502

Query: 173 KRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P   KE EL             +   I  +G  +D  L    +  +  +  +L+ +
Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+   F + G  +   T      T + VL       P    + 
Sbjct: 563 AYDIA-GEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVIL 621

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R                                 ++         P     +  R H 
Sbjct: 622 EHRSL-------------------------------TKLKSTYTDKLPLMVNAKTGRVHT 650

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q         +S+P+   I         +R   IA +G+K++ AD + IE R++A +
Sbjct: 651 SYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHL 710

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   LKAF  G+D++  T A  F      VT +QR   K +   L Y   A     +A
Sbjct: 711 SQDAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAF---GLA 767

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +  N     + T      +       R+M+E     A E  ++ T   R +    +
Sbjct: 768 RQLDIPRNEAQTYIDT-----YFARYPGVLRYMEETRA-SAAELGYVSTLFGR-RLYLPE 820

Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              R +       +A       G A  II +    +        +  + +++     LV+
Sbjct: 821 IRDRNAMRRQAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEITMIMQVHDELVF 880


>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
 gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
          Length = 927

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/691 (16%), Positives = 200/691 (28%), Gaps = 167/691 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64
           D    G+        +I   F             HD    P  L  A         +E+ 
Sbjct: 354 DTETDGLD--TLTANLIGLCFAVKPGEAAYLPVGHDYLDAPDQLDRATVLAALKPVMEDP 411

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
            +  +  N  F+R VLK     DI +       +L     + +         A +     
Sbjct: 412 TIGKIGQNLKFDRGVLKRY---DIELAGIAFDTMLESYVLDSVAGRHDMDSLAERFLQHT 468

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
               +E+  +     T   +          A      Y   D  VT  + ++L P   + 
Sbjct: 469 TVSFEEIAGKGRNQLTFNQI----------AMEQAASYAAEDADVTLRLHQKLWPRIEQA 518

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   I   G  +D ++    +  +     +L+ E   L      
Sbjct: 519 PELRRVFEEIEMPLVPVLSRIERTGVLIDESILAAHSVELAKRLEELEGEAHQLA-EEPF 577

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  L+ +  L +   T     +T + VL+      P    +   R       
Sbjct: 578 NLSSTKQLQEILYDKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKLILEYR------- 630

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 631 ------------------------GLAKLKSTYTDKLPQMINPLSKRVHTSYHQAVTATG 666

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA     +V AD + IE R++A +A +   L AF
Sbjct: 667 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPPDALIVAADYSQIELRIMAHLARDPGLLNAF 726

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T A  F ++  +VT+DQR   K +   L Y   A    +  S         
Sbjct: 727 AAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINFGLIYGMSAFGLARQLSV-------- 778

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                         +A+ +     E +P                             +  
Sbjct: 779 -----------PRSEAQKYMNLYFERYP----------------------------GVLE 799

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            + +   Q  + G       RR + L+ +                   R  G  R+ +N 
Sbjct: 800 YMERTRRQASDRGYVETLDGRR-LYLLDIHSRNGM-------------RKKGVERAAINA 845

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
                               Q  S DI+   M+              +++ VHDE+V E 
Sbjct: 846 PM------------------QGTSADIIKRAMIAIDGWLQQEAPPVRMIMQVHDELVFEV 887

Query: 637 P-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
             D  E   + +  LM     +   +PL+ +
Sbjct: 888 QRDAVESAKARIKALMEGC--FKLDVPLQVD 916


>gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 859

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 118/680 (17%), Positives = 221/680 (32%), Gaps = 160/680 (23%)

Query: 6   IDFETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           +D ET + +D+      GI    E+       F   D  V+    + D V    +K  LE
Sbjct: 288 LDTET-TSLDIMAAEIVGISLAIEEKKAAYIPFIHTDGSVQ---LLRDEVF-AAIKPILE 342

Query: 63  NTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           N  +  +  N  ++ +VLK           D  +  +I      R +    +LK +G   
Sbjct: 343 NPAIKKIGQNIKYDYSVLKNHGIHLQGLAYDTMLESYILNSNAGRHDMDTLSLKYLG--- 399

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                K    +++  +  K    + +                 Y   D  +T ++  +L 
Sbjct: 400 ----HKTITFEDIAGKGAKQLRFDQIPV----------DKASVYAAEDADITLQLHHKLY 445

Query: 177 PL---------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           P+         +  E  L  +   +  RG  +D        + +      L++E   L  
Sbjct: 446 PMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEEAIQLA- 504

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    ++L+  LF E  + +   T T       S  +        F+ R+ A    
Sbjct: 505 GKPFNLSSPKQLQEILFNEQKIPVIAKTPTGQPSTAESVLQELA-----FDYRLAA---- 555

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                               L+  G ++         P +      R H   +Q +    
Sbjct: 556 ------------------VILEHRGLTKLVSTYIDALPKKINAETGRVHTSYNQAVAATG 597

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R+  IA   + ++ AD + IE R++A ++ ++  L AF
Sbjct: 598 RLSSSEPNLQNIPIRNEEGRLIRTAFIAPPEQVILAADYSQIELRIMAHLSQDENLLTAF 657

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A  F++A  +VT +QR   K +   L Y   A     +A   G+     
Sbjct: 658 ANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER--- 711

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                        +DA+N+     + +P                            ++  
Sbjct: 712 -------------QDAQNYIDTYFQRYP----------------------------KVLE 730

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            +++  +Q  E G                        +    GR L   ++         
Sbjct: 731 YMNRTRQQAHEQG-----------------------YVETLCGRRLYLPEI--------- 758

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVCE 635
            TR L R+           +Q  + DI+ + M+N  K           +++ VHDE+V E
Sbjct: 759 NTRNLMRQKAAERTAINAPMQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFE 818

Query: 636 TPDTD-EFNASMLYHLMTSN 654
               + E +   +  LM   
Sbjct: 819 VASQEIEASTVKIRQLMEQA 838


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 116/675 (17%), Positives = 226/675 (33%), Gaps = 152/675 (22%)

Query: 33  FAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
             +G            H         ++   L+  LEN +      N+ F+R + K C  
Sbjct: 408 CCWGTGSDEAAYIPVGHKIGHNLQLDLVVSALRPILENANYPKTFQNAKFDRLIFK-CQG 466

Query: 86  LDIPIHRWICTLVLARSNGLP--------SALKAVGEALKLSSQKMEEGKELIARFCKGE 137
           +++     +   +LA     P         +L+ +G  L+L+       K       K  
Sbjct: 467 INLV--GVVFDTMLASYLINPDTTHNLSDLSLRNLG--LQLTEYNDIVTKTGKKELQKNI 522

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-----------EPLSSKEQELW 186
               +             +   YC   V  T ++  +L           + L   EQ L 
Sbjct: 523 ADIGI------------DIVAYYCGTQVYATFQLVDKLRCELNKTPDLAKLLVEVEQPLE 570

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +   +   G  ++ +    L+Q ++ E  KL+ +   +      +    ++L   LF +
Sbjct: 571 AVLAEMEYTGVRINSSYLQELSQQLESELAKLEIQATEIAS-EKFNLDSPKQLSYILFDK 629

Query: 247 TGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            GL  +     +T      ++ +KL                            +++ G +
Sbjct: 630 LGLSTKYSRKIQTGYSTDAATLEKLQE--------------------------VDNTGFV 663

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
              +++  +S+         P    P+  R H + +Q  T      +S+P+   I     
Sbjct: 664 DAIIEYRTSSKLKSTYVDALPALVHPQSQRLHTDFNQTATSTGRLSSSNPNLQNIPIRTA 723

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            S  +R   +   G  +V AD + IE R+LA ++ E   ++A++  ED++  T    F  
Sbjct: 724 FSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPVLVQAYKQNEDIHTVTAKLVF-- 781

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT ++R   K +   + Y  G+    K A +TG++                  +A 
Sbjct: 782 EKDEVTSEERRFAKTINFGVIYGMGS---LKFARSTGVD----------------KANAN 822

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG--KA 537
            F R   E +P                            +++  L +  ++ I  G  + 
Sbjct: 823 EFIRRFNERYP----------------------------QVFAYLEKVKKEAISQGYVET 854

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY-LNTTTRQLTREYTYGGK 596
           I+ R+R      Y      +L       + +   D+  +R   L      L R       
Sbjct: 855 ILGRRR------YFDFTSKSLK----ELKGISLEDIDLSRLKNLGAYNAGLLRSAANAP- 903

Query: 597 LTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLM 651
                +Q  S DI+   M+   +        ++L VHDE+V E P  +       +  +M
Sbjct: 904 -----IQGSSADIIKIAMVQLHEVLRNYQARLLLQVHDELVFEVPPQEWGELQLQIKSVM 958

Query: 652 TSNPSWAKGLPLKAE 666
            +  S    +PL  +
Sbjct: 959 ENAMS--LSVPLVVD 971


>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
 gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
          Length = 941

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 116/693 (16%), Positives = 217/693 (31%), Gaps = 166/693 (23%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63
           +D     + +      ++  +F             HD       +P       LK  LEN
Sbjct: 369 VDTETTSLDE--MRAQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEVLARLKPWLEN 426

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQK 122
                +  N  ++R V     N  I +  +   T++ +    +         A +   + 
Sbjct: 427 PARPKLGQNIKYDRHV---FANHGIEVQGYAHDTMLQSYVLEVTKPHGLASLAERHVGRS 483

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               ++L  +         +                EY   D   T ++ + L P     
Sbjct: 484 GINYEDLCGKGVHQIKFNQV----------DIARAAEYSCEDSDQTLDVHRVLWPQLQAN 533

Query: 183 QELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++L ++ Q           I   G  +D  +    +  +     +L+ E   +  G   +
Sbjct: 534 EKLLFIYQLEMQSSETLYRIERNGVLIDAPMLARQSHELGQRLLQLETEAYEMA-GQPFN 592

Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               ++L    F + G+ +         +T + VL    +  P   ++  +R        
Sbjct: 593 LGSPKQLAEIFFDKLGMKVVKKTPSGARSTDEDVLEKLAEDHPLPAKLLEHR-------- 644

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                             +L  L  + T + +       N PR  R H    Q +     
Sbjct: 645 ------------------SLSKLKGTYTDKLA----QLAN-PRTGRVHTHYAQAVAVTGR 681

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             ++DP+   I         VR   +A  G  +  AD + IE R++A ++G++  L AF 
Sbjct: 682 LSSNDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESLLHAFT 741

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G D++  T A  F VA  QV+ +QR   KV+   L Y   +     +A   G+     A
Sbjct: 742 AGLDVHRATAAEVFGVALEQVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAAA 798

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +                +   ++  + A E  ++ T   R     R     ++     
Sbjct: 799 AYIDRYFQRYP------GVKHYMDSTRQLAKEQGYVETVFGR-----RLLLPEINS---- 843

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                                                  P+G     R  G  R+ +N  
Sbjct: 844 ---------------------------------------PNG----PRRAGAERAAINAP 860

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETP 637
                              Q  + D++   M      ++A K G  +++ VHDE+V E P
Sbjct: 861 M------------------QGTAADLIKLSMVKVQQVLDAEKRGTKMIMQVHDELVFEVP 902

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
           + + E+  + +  LM         +PL AE G+
Sbjct: 903 EAEVEWVRTEIPRLMAGVAE--LKVPLLAEIGF 933


>gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
 gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
          Length = 913

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/595 (18%), Positives = 188/595 (31%), Gaps = 87/595 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56
           +  D ET + ID         A+   V+  +F   +         H        + +   
Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 57  ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
              LK  LE+     V  ++ ++  VL    +  I +       +L     +   +    
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169
              ALK         +++  +  K  T + +          A    G Y   D  VT   
Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492

Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              ++++LE +          E  L  +   I   G  VD  L    ++ +  +   L++
Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +   L  G   +    ++L   L+ + GL +   T T       +   L   A Q F   
Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   +  +Q+   S+         P Q   R  R H    
Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSYH 645

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   +A +G KL+ AD + IE R++A +A +
Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF    D++  T A  F V    V  DQR   K +   L Y   A     +A   
Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINFGLIYGMSAF---GLAKQI 762

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +    A               E     A E  F+ T   R +    + HS
Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
           +   +     +        G A    KR  V +    ++   +  ++L     LV
Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/679 (16%), Positives = 204/679 (30%), Gaps = 166/679 (24%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
           + G+  Y      +  A  + D PV+L        + + LK  LE+     V  N  F++
Sbjct: 380 EPGVAAY------LPVAHDYLDAPVQL----DRAYVLETLKPLLEDEKALKVGQNLKFDK 429

Query: 78  TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
           ++L      DI +       +L     + +         + +    K    +E+  +   
Sbjct: 430 SLLARY---DIDLRGIAYDTMLESYVLDSVSGRHDMDSLSDRYLDHKTITFEEIAGKGKN 486

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQE 184
             T   +          A      Y   D  VT ++   + P            +  E  
Sbjct: 487 QLTFNQI----------ALEQAAPYAAEDADVTLQLHLAMWPKLKESTGQLKVFNEIEMP 536

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   I   G  +D  +    ++ +     +L+ +   L      +    ++L+  L+
Sbjct: 537 LLPVLSHIERTGVLIDQHILAAHSKELSKRLGELEIQAHELA-EEPFNLASTKQLQAILY 595

Query: 245 LETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            +  L +   T     +T + VL+      P    +   R                    
Sbjct: 596 EKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVILEYR-------------------- 635

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                      G ++         P    P   R H    Q +T      +SDP+   I 
Sbjct: 636 -----------GLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATGRLSSSDPNLQNIP 684

Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R   IA  G ++V AD + IE R++A ++ ++  L AF  G+D++  T   
Sbjct: 685 VRNDEGRRIRQAFIAPAGYRIVAADYSQIELRIMAHLSQDRGLLNAFAAGKDIHRATAGE 744

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F +   +VT +QR   K +   L Y   A     +A   G+                  
Sbjct: 745 VFGLPLDKVTNEQRRSAKAINFGLIYGMSAF---GLARQLGIPRGEA------------- 788

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                          ++       R   +   + +  +Q  E G
Sbjct: 789 -------------------------------QRYMDLYFERYPGVLEYMERTRQQASEQG 817

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                  RR               L LP  RS                +  + R+     
Sbjct: 818 YVSTLDGRR---------------LYLPDVRS----------------SNGMRRKAAERA 846

Query: 596 KLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTD-EFNASML 647
                 +Q  + DI+   M+               +++ VHDE+V E  ++  +     +
Sbjct: 847 -AINAPMQGTAADIIKRAMIAVDAWLQGQQQPLVRMIMQVHDELVFEVHESAMDDACLRI 905

Query: 648 YHLMTSNPSWAKGLPLKAE 666
             LM  +   A  +PLK +
Sbjct: 906 RSLMEGSMELA--VPLKVD 922


>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
 gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
          Length = 956

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/670 (15%), Positives = 199/670 (29%), Gaps = 156/670 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
           ++    I F   +   P    D +   ++    K  LE+  +  +  N  ++ +VL    
Sbjct: 404 SDKAAYIPFGHNYPGAP----DQIDKQLVIDKFKPLLEDDSLKKIGQNLKYDMSVLAEDA 459

Query: 85  NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            + +         +L     + + +       ALK   +K     ++  +  K  T   +
Sbjct: 460 GITL--RGVAFDTMLESYVLDSVATRHDMDSLALKYLGRKTISFTDIAGKGAKQLTFNQI 517

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQT 191
                            Y   D  VT  + + L P    E  L  +              
Sbjct: 518 ----------GLHEASPYAAEDADVTLRLHQTLWPKLEAEDRLPEVFRDIELPLVTVLSR 567

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           I   G  VD  L    +Q +     +L ++   +  G   +    ++L   L+ +  + +
Sbjct: 568 IERNGTYVDATLLKHQSQFLAKRMAELQEKAFDIA-GQEFNLASPKQLGEILYEKLEIPV 626

Query: 252 EDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
              T      T + VL       P                                 +  
Sbjct: 627 IKKTPKGAPSTAEAVLQELAHDYPLP-------------------------------QVI 655

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
           + + G ++         P     R  R H    Q +T      +SDP+   I        
Sbjct: 656 MDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSEEGR 715

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +A +GKK+V  D + IE R++A ++G++    AFE G D++  T A  +     
Sbjct: 716 KIRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKGLTDAFEQGLDIHRATAAEVWGKTLD 775

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +V+ + R   K +   L Y   A     +A   GL        +      E +   + + 
Sbjct: 776 EVSDNDRRNAKAINFGLIYGMSAF---GLAKQLGLPRKEAQEYID--LYFERYPGVKKYM 830

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              +                                     + + + +T+         +
Sbjct: 831 EDTRAL----------------------------------AIDKGYVETV-------YGR 849

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           R  +P ++ K  +               R  G  R+ +N                     
Sbjct: 850 RLYLPEIHSKNGQ---------------RRQGAERAAINAPM------------------ 876

Query: 603 QAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNP 655
           Q  + DI+ + M+        T     +++ VHDE+V E  D   +     +   M S  
Sbjct: 877 QGTAADIIKKAMIKVHDWLETTHFDAKMIMQVHDELVFEVADDQVDDLVKEVKARMESAA 936

Query: 656 SWAKGLPLKA 665
                L + A
Sbjct: 937 ELKVPLIVDA 946


>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
 gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
          Length = 930

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 130/705 (18%), Positives = 223/705 (31%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H    +P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNAELVGISIAFQAGEAVYIPVGHSLTAVPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNNIAGDAMLASYIIESHLGHGL 459

Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + G  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +  RL   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    PR +
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A  G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF++GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622
                 G  R+ +N                     Q  + D++   M+N         G 
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMINVRNWLSDGIGS 874

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/620 (18%), Positives = 205/620 (33%), Gaps = 99/620 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQ--------V 56
           D ET S +D              ++  AF             HD     PQ         
Sbjct: 355 DLETDS-LDTL---------SANIVGIAFAVAPGKAAYLPVAHDYLDAPPQLDRAAVLKQ 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE++    V  N  ++R VLK   N DI ++      +L     N +         
Sbjct: 405 LKPLLEDSKAAKVGQNLKYDRGVLK---NYDIELNGIKFDTMLESYCLNSVGGKHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +  + K    +E+  +     T   +          A      Y   D  VT ++  +
Sbjct: 462 AARWLNHKTVTFEEIAGKGKYQLTFNQI----------ALEQAAHYAAEDADVTLQLHLQ 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +E             L  +   +   G  +D  +    +Q +     +L+Q+  
Sbjct: 512 MWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQNILAKHSQELTTRLAELEQKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF +  +     T     +T ++VL+      P    +  +
Sbjct: 572 ELA-GEPFNLSSTKQLQTILFEKQEIKPTKKTPGGAPSTSEKVLAELALDYPLPKVILEH 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P    P   R H   
Sbjct: 631 R-------------------------------GLSKLKSTYTDKLPQMINPITGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA   K++V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSNDPNLQNIPVRNEEGRRIRQAFIAGADKRIVAADYSQIELRIMAHLSQ 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  GED++  T +  F VA ++V+ +QR   K +   L Y   A     ++  
Sbjct: 720 DKGLLDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAF---GLSRQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +        +E      R+M+    + A  D       +  +      +
Sbjct: 777 LNIGAGEAKKYMDL-----YFERYPGVLRYMEATRAQAA--DKGYVETLDGRRLWLPDIN 829

Query: 515 SRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           S  +       +A       G A  II R    V    ++++ + + +++     LV+  
Sbjct: 830 SSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDGWLLQQNSDEVKMIMQVHDELVFEI 889

Query: 573 VGNNRSYLNTTTRQLTREYT 592
             +  +  + T R+L     
Sbjct: 890 HKDAVAGASQTIRELMENSM 909


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/685 (16%), Positives = 209/685 (30%), Gaps = 174/685 (25%)

Query: 6   IDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ 55
           ID ET S   +           + G+  Y      I  A  + D P++L        + +
Sbjct: 344 IDTETTSLEPMQAQLVGISLCCEPGVAAY------IPVAHRYQDVPLQL----SRASVLE 393

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            L+  LE+     V  N  ++  +     N  + +      TL+ +       +      
Sbjct: 394 KLRSWLEDDSKPKVGQNLKYDSHI---FANHGVTLRGIVHDTLLQSYVFESHRSHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+  ++K    +++  +       + +                EY   D  +T ++ +R
Sbjct: 451 ALRHLNRKTMTFQDVCGKGASQLCFDQV----------DIARATEYAAEDADITLQLHQR 500

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P               E     + Q +   G  +D  L  T +  +     +++Q+  
Sbjct: 501 MFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEIEQQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +       + +T + VL    +  P    +   
Sbjct: 561 ELA-GQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKLLLE- 618

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G S+         P    P   R H   
Sbjct: 619 ------------------------------YRGLSKLKSTYTDKLPKMIDPATGRVHTNY 648

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IA  G  +V AD + IE R++A ++ 
Sbjct: 649 AQAVAVTGRLSSNDPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISE 708

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L+AF  GED++  T A  F VA   V+ +QR   KV+   L Y   A     +A  
Sbjct: 709 DENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAF---GLAGN 765

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        ++               R+M +   E                       
Sbjct: 766 LGIERAAAQSYIEKYFYR-----FSGVKRYMDDTRLE----------------------- 797

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDV 573
                          +     + +  R+                 L LP   S    R  
Sbjct: 798 --------------AKARGYVQTVFGRR-----------------LWLPEINSPNGPRRQ 826

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLT 627
           G  R+ +N                     Q  + D++   M      + A K    +++ 
Sbjct: 827 GAERAAINAPM------------------QGTAADLIKLAMIAVQDWLEAEKLQTKMIMQ 868

Query: 628 VHDEIVCETPDTD-EFNASMLYHLM 651
           VHDE+V E P+T+       L  LM
Sbjct: 869 VHDELVLEVPETELALVRVKLPELM 893


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/685 (16%), Positives = 209/685 (30%), Gaps = 174/685 (25%)

Query: 6   IDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ 55
           ID ET S   +           + G+  Y      I  A  + D P++L        + +
Sbjct: 338 IDTETTSLEPMQAQLVGISLCCEPGVAAY------IPVAHRYQDVPLQL----SRASVLE 387

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            L+  LE+     V  N  ++  +     N  + +      TL+ +       +      
Sbjct: 388 KLRSWLEDDSKPKVGQNLKYDSHI---FANHGVTLRGIVHDTLLQSYVFESHRSHDMDSL 444

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+  ++K    +++  +       + +                EY   D  +T ++ +R
Sbjct: 445 ALRHLNRKTMTFQDVCGKGASQLCFDQV----------DIARATEYAAEDADITLQLHQR 494

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P               E     + Q +   G  +D  L  T +  +     +++Q+  
Sbjct: 495 MFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEIEQQAY 554

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +       + +T + VL    +  P    +   
Sbjct: 555 ELA-GQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKLLLE- 612

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G S+         P    P   R H   
Sbjct: 613 ------------------------------YRGLSKLKSTYTDKLPKMIDPATGRVHTNY 642

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IA  G  +V AD + IE R++A ++ 
Sbjct: 643 AQAVAVTGRLSSNDPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISE 702

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L+AF  GED++  T A  F VA   V+ +QR   KV+   L Y   A     +A  
Sbjct: 703 DENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAF---GLAGN 759

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        ++               R+M +   E                       
Sbjct: 760 LGIERAAAQSYIEKYFYR-----FSGVKRYMDDTRLE----------------------- 791

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDV 573
                          +     + +  R+                 L LP   S    R  
Sbjct: 792 --------------AKARGYVQTVFGRR-----------------LWLPEINSPNGPRRQ 820

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLT 627
           G  R+ +N                     Q  + D++   M      + A K    +++ 
Sbjct: 821 GAERAAINAPM------------------QGTAADLIKLAMIAVQDWLEAEKLQTKMIMQ 862

Query: 628 VHDEIVCETPDTD-EFNASMLYHLM 651
           VHDE+V E P+T+       L  LM
Sbjct: 863 VHDELVLEVPETELALVRVKLPELM 887


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 115/655 (17%), Positives = 211/655 (32%), Gaps = 152/655 (23%)

Query: 49  HDPVMP-QVLKEALE----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
               +P + +  AL     +++      N+ ++R +L       + +   +   +LA   
Sbjct: 436 SPEQLPLETVLTALAPWLASSNHPKTLQNAKYDRLIL---LRHGVALEGVVIDTLLADYL 492

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELI--ARFC-KGETHECLYDRNKPNHREAWRLFGEY 160
              +A               + G EL+    F  +      L  + +            Y
Sbjct: 493 RDAAA---------------KHGLELMAEREFGFQPTAFTDLVGKKQTFADVPLEPASLY 537

Query: 161 CKGDVTVTREIFKRLE-----------PLSSK-EQELWYLDQTINDRGYCVDVALAHTLN 208
           C  DV VTR +   L            PL  + EQ L  +   +   G  +DV     L+
Sbjct: 538 CGMDVHVTRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLS 597

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVL 263
           + +     +L+ + ++   G+  +    ++L   LF   GL  +    T+T   T   VL
Sbjct: 598 EEMGSTLQQLESDAKA-AAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVL 656

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    V  +R+                                S+        
Sbjct: 657 EKLGNDHPVVPLVLEHRVL-------------------------------SKLKSTYIDA 685

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
            P        R H + +Q +T      +S+P+   I      S  +R   +  EG  L+ 
Sbjct: 686 LPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLS 745

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+L  ++GE+   +A+ +G+D++  T      +   +V+ D+R +GK +   
Sbjct: 746 ADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLL--LDKNEVSPDERRLGKTINFG 803

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y  GA   Q+ A  TG++ +     +      + +     F     E     A+   +
Sbjct: 804 VIYGMGA---QRFARETGVSQSEAKEFL--ARYKQRYPKVFAFL----ELQERLALSRGY 854

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
           + T   R +                                              D+N L
Sbjct: 855 VETILGRRRP------------------------------------------FHFDRNGL 872

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
             +L         ++  N +       Q  R            +Q  S DI+   M+   
Sbjct: 873 GRLLGK----APLEIDLNVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQ 922

Query: 619 KAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            A         ++L VHDE+V E  P+  +    ++   M      A  +PL  E
Sbjct: 923 DALQRQGLPAQLLLQVHDELVLEVAPNALDATRELVVQTMEQAV--ALSVPLVVE 975


>gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
          Length = 930

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 128/705 (18%), Positives = 219/705 (31%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFA 506

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622
                 G  R+ +N                     Q  + D++   M++         G 
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 874

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/635 (17%), Positives = 200/635 (31%), Gaps = 142/635 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115
           LK  LE   V  +A N  ++  VL     +++       T++L+               +
Sbjct: 452 LKPMLEAPSVLKIAQNLKYDWLVLSRY-GIEVGPFD--DTMLLSYVLDAGRGKHGMDALS 508

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L          KE+        T + +          +      Y   D  VT  ++  L
Sbjct: 509 LAHLDHTPIPFKEVAGSGKSMVTFDKV----------SIEKASAYAAEDADVTLRLWTLL 558

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +     E          + L  +   +  RG  +D  +   L+  +  +   ++ ++  +
Sbjct: 559 KARLVAEKMVTVYERLERPLVPVLCRMEARGVEIDRQILSRLSGELAQKAAGIEADIHEM 618

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280
             G   +    ++L   LF +  L     T+T    T  + L            ++ + R
Sbjct: 619 A-GEPINIASPKQLGELLFGKMELPGGKKTKTGQWATGAQALEDLAAEGHELPRRIVDWR 677

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            ++         P        R H    
Sbjct: 678 QL-------------------------------TKLKSTYTDALPTFINKTTGRVHTSYA 706

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              T      +S+P+   I         +R+  IA++G KLV AD + IE RVLA MA  
Sbjct: 707 MASTTTGRFSSSEPNLQNIPVRTEAGRKIRTAFIAADGHKLVSADYSQIELRVLAHMADI 766

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G D++  T +  FNV    +    R   K +   + Y   A     +A+  
Sbjct: 767 SQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAINFGIIYGISAF---GLANNL 823

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    +  +K       +E       +M E                    K + ++H 
Sbjct: 824 GIDRGEASDYIK-----MYFERFPGIRDYMDET-------------------KKFAREHG 859

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V  ++                    +R   P +             P  R+       N
Sbjct: 860 YVETIF-------------------GRRAHYPEIKSSN---------PQMRAF------N 885

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R+ +N   +         G   + I +A++R    EG + A K    ++L VHDE++ E
Sbjct: 886 ERAAINAPIQ---------GSAADIIRRAMAR---MEGALAAEKLSAQMLLQVHDELIFE 933

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            PD + +     +  +M   P  A  L  PL+ + 
Sbjct: 934 VPDDEVDATIETVVKVMEDAPMPALSLSVPLQVDA 968


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/678 (16%), Positives = 210/678 (30%), Gaps = 165/678 (24%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56
           D ET + +D       + A    ++ F+  FD          HD           V+   
Sbjct: 351 DTET-TSLD------YRIA---QIVGFSVAFDAQDAYYVPLAHDYEGAPEQLNREVILAQ 400

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGE 114
           +K  LE+  V  + H+  ++  VL+   N  I +  W    +LA       A        
Sbjct: 401 IKPILEDESVKKIGHHLKYDAHVLE---NHGIHLAGWYFDTMLASYVLYSVATRHGMDDV 457

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A    S      +++  R  K +T   +                 Y   D  VT  +++ 
Sbjct: 458 ARLYLSHLTTTYEQVAGRGAKQKTFNQI----------PLETAAHYAAEDAHVTYRLYEV 507

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L             L + E  +  +   + + G  +D+A    L          L+ ++ 
Sbjct: 508 LSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQNLENQIM 567

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            +  G   +    +++   LF + GL      + T     S+++ +  +           
Sbjct: 568 EIA-GESFNVSSPKQVGEVLFEKLGL---KGGKKTTTGQYSTSESVLEKIEHPIAQL--- 620

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                   L++ G S+           Q  P   R H    Q +
Sbjct: 621 -----------------------ILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQAL 657

Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      ++DP+   I     I   +R   +A EG+ L+ AD + IE R++A ++ ++  
Sbjct: 658 TATGRLSSTDPNLQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEAL 717

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    +   +VT DQR   K +   L Y        +    T   
Sbjct: 718 LDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTR-- 775

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                            ++++++ +     +P                            
Sbjct: 776 -----------------QESQDYIKQYFHRYP---------------------------- 790

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            +++ + +  +  +E G                        +    GR L   D+     
Sbjct: 791 GIYDYMQRTRQVALEQG-----------------------FVETLLGRRLYTPDID---- 823

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVC 634
             N   R+          L     Q  + DI+   M+   K        ++L VHDE+V 
Sbjct: 824 ARNMMVRKAAERAAINAPL-----QGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVF 878

Query: 635 ETPDTDEFNAS-MLYHLM 651
           E  +      +  L  +M
Sbjct: 879 EVDEDIADELAPKLAEVM 896


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/642 (16%), Positives = 193/642 (30%), Gaps = 159/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-----GLPSALKA 111
           +K  L + ++  +  N  F+  V+    N DI +       +L         GL      
Sbjct: 411 IKPILVDKNIQKIGQNLKFDYGVMA---NYDIELKNMAFDTMLESYVLNSVAGL-GRHDM 466

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A +  + K    +E+  +     T   +                 Y   D  VT  +
Sbjct: 467 DSLAQRHLNHKTITFEEIAGKGKNQLTFNQI----------PLEQASTYAAEDADVTLLL 516

Query: 172 FKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P    E +L  + Q            +   G  +D       ++ +     ++++
Sbjct: 517 HQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVGVLIDANKLAKQSREIASRLMEIEK 576

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQV 276
           E  ++      +    ++L+  LF +  L +         +T + VL            +
Sbjct: 577 EAYAIA-EQEFNLASPKQLQAILFEKLQLPVVKKTPSGAPSTNEEVLEELAFSHELPKII 635

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R                                 S+         P    P+  R H
Sbjct: 636 LQHRSL-------------------------------SKLKSTYTDKLPMMIHPKTKRVH 664

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q +T      + DP+   I         +R   IA EG K+V AD + IE R++A 
Sbjct: 665 TSYHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKIVAADYSQIELRIMAH 724

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++  L AF  G+D++  T A  F V    VT +QR   K +   L Y   A     +
Sbjct: 725 LSQDKGLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINFGLIYGMSAF---GL 781

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           +   G+      H                                               
Sbjct: 782 SRQLGITRGQAQHY--------------------------------------------MD 797

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +   R   + + + +  +Q  E G                        +   +GR L   
Sbjct: 798 RYFERYPGVLSYMERTRKQAAEQG-----------------------YVETLAGRRLYLP 834

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IV 625
           D+          +R   R      +     +Q  + DI+ + M+   K          ++
Sbjct: 835 DI---------NSRNAMRRKASEREAINAPMQGTAADIIKKAMIALDKWIESVKPDLYML 885

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E  ++  + +   +  LM  +      +PLK +
Sbjct: 886 MQVHDELVFEVKESAVDRSQQKIRQLMEQSMQ--LTVPLKVD 925


>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 896

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 211/690 (30%), Gaps = 165/690 (23%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64
           D     +  Y E   V+  +F  +          HD +  P+ L         K  LE+ 
Sbjct: 323 DTETTSLN-YME-AKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAVLAQMKPLLEDP 380

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           +   V  N  ++ +VL    N  I +       +L     +   +       ALK   Q 
Sbjct: 381 NQAKVGQNLKYDASVLA---NHGIALKGIDYDTMLESYVLDSTATRHDMDSLALKYLGQN 437

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
               +++  +  K  T   +               G Y   D  +T  + + L P   + 
Sbjct: 438 TIHFEDIAGKGAKQLTFNQV----------KVEEAGPYAAEDADITLRLHQALWPKLEEL 487

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   I  +G  +   + H  +  + +   +L      L  G   
Sbjct: 488 SSLLPVFRDIELPLVPVLSKIERQGALLSCEMLHQQSTELGLRLEELKSAAYELA-GQEF 546

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L   LF +  L +   T      T + VL       P    +   R       
Sbjct: 547 NLGSPKQLGEILFEKLELPIIKKTPKGAPSTAEEVLVELALDYPLPKLLLEYRSL----- 601

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                     S+         P    P+  R H    Q +    
Sbjct: 602 --------------------------SKLKSTYTDKLPGMVNPQTGRVHTSYHQAVAATG 635

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA +G ++V AD + IE R++A ++ +   L AF
Sbjct: 636 RLSSSDPNLQNIPIRTEEGRRIRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSLLTAF 695

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G+D++  T A  F V+  +V+ DQR   K +   L Y   A     +A    L     
Sbjct: 696 KEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMSAF---GLAKQLHLGR--- 749

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                         +A+ +     E +P                   +  +   +++   
Sbjct: 750 -------------HEAQEYIDRYFERYP---------------GVAQYMDRTRAIAK--- 778

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              Q F +T+                                GR L   ++         
Sbjct: 779 --EQGFVETLF-------------------------------GRRLYLPEI--------- 796

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636
             R   R            +Q  + DI+   M++  +      A   +++ VHDE+V E 
Sbjct: 797 NARNKMRVQAAERTAINAPMQGSAADIIKRAMLSVDQWLEQGDANARMIMQVHDELVLEV 856

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
            + + +  ++ +  LM+     A  L ++A
Sbjct: 857 ANDEVDAVSNQVCRLMSGAAELAVPLLVEA 886


>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
 gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
           exonuclease [Shigella flexneri 2a str. 301]
          Length = 928

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/619 (16%), Positives = 196/619 (31%), Gaps = 98/619 (15%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y      VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEHADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P+  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    +    E    +   G              
Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 829

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573
           S          +A       G A    KR  + +  +++ ++  + +++     LV+   
Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889

Query: 574 GNNRSYLNTTTRQLTREYT 592
            ++   +     QL    T
Sbjct: 890 KDDVDAVAKQIHQLMENCT 908



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
           Q  + DI+   M      + A +    +++ VHDE+V E   D  +  A  ++ LM 
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905


>gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
 gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
          Length = 988

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/669 (16%), Positives = 219/669 (32%), Gaps = 136/669 (20%)

Query: 33  FAFGFDDHPVELWDCVHD-----------PVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
             +G  ++ V      H+             +   L + L + D      N+ F+R + K
Sbjct: 410 CCWGMGENDVAYIPLGHNITTNLEKNLQLNTVLSTLDKILASRDYPKTFQNAKFDRLIFK 469

Query: 82  ACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                 + +   I   +LA     P         AL+    ++ E   ++ +  K E  +
Sbjct: 470 ---YQGVTLDGVIFDPMLASYLLNPDHTHNLTDLALRYLGLQLTEYDHIVQKSGKKEPQK 526

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLD 189
            + D        +      YC   V  T ++  +L             L   EQ L  + 
Sbjct: 527 TIAD-------ISIHTVANYCGKQVYATWQLVGKLREELNKIPALFKLLVDVEQPLEVVL 579

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  RG  ++ A    L+Q ++ +   L+ +   +  G   +    ++L   LF + GL
Sbjct: 580 AEMEHRGVIINSAYLQQLSQYIESDLATLEIKATKIA-GEKFNLGSPKQLSYILFEKLGL 638

Query: 250 HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
             +   +  T      ++ +KL                            ++  G +   
Sbjct: 639 STKYSRKISTGYSTDAATLEKLQE--------------------------VDETGFVDAI 672

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
           +++   ++         P     +  R H   +Q  T      +S+P+   I      S 
Sbjct: 673 IEYRTLAKLKSTYVDALPELVNHKTQRIHTSFNQTATATGRLSSSNPNLQNIPIRTAFSR 732

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +   G  +V AD + IE R+LA ++ E   ++A+   +D++  T    F+    
Sbjct: 733 QIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK--E 790

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT ++R   K +   + Y  G     K + +TG++ N     ++  +            
Sbjct: 791 DVTSEERRFAKTINFGVIYGMGV---LKFSRSTGVDKNIANEFIQKFNQRYPL------V 841

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E   + AI   ++ T   R ++ +   +  + E                       
Sbjct: 842 FTYLETIKKQAISQGYVETILGR-RRYFDFTNKTLREF---------------------- 878

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                     K K+   + L   ++L   D G  RS  N                    +
Sbjct: 879 ----------KGKDLQEIELNKLKNLGPYDAGLLRSAANAP------------------I 910

Query: 603 QAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657
           Q  S DI+   M+   +        ++L VHDE+V E P ++       +  +M +    
Sbjct: 911 QGSSADIIKIAMVRLHQVLRPYQTKLLLQVHDELVFEVPPSEWDELQLQIKSVMENAMK- 969

Query: 658 AKGLPLKAE 666
              +PL  +
Sbjct: 970 -LSVPLVVD 977


>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
 gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
          Length = 930

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/550 (16%), Positives = 179/550 (32%), Gaps = 74/550 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAYAL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +  N   + +   + F   ++E        +   G             +S 
Sbjct: 782 ISRADAQKYM--NLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRL-----YLPDINSS 834

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +       +        G A    KR  + L  + +   N+ +++     LV+      
Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEK 894

Query: 577 RSYLNTTTRQ 586
            ++     +Q
Sbjct: 895 VAFFREQIKQ 904


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 115/685 (16%), Positives = 215/685 (31%), Gaps = 174/685 (25%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LEN 63
           +D     +  Y E   ++  +F  +          HD    PQ L +A         LEN
Sbjct: 358 VDTETTSLN-YME-AKLVGLSFAVEAGKAAYLPLAHDYLDAPQQLNQAEALAKLKPLLEN 415

Query: 64  TDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            ++  V  N  ++ ++L            D  +  ++   V ++ N    ALK +G    
Sbjct: 416 PEIKKVGQNLKYDMSILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALKYLG---- 471

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               K    +E+  +  K  T   +          +  +   Y   D  +T  + + L P
Sbjct: 472 ---HKNISFEEIAGKGAKQLTFNQI----------SLEVAAPYAAEDADITLRLHQHLWP 518

Query: 178 LSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              KE EL             +   +  +G  +D  L    ++ +     +L+Q+   + 
Sbjct: 519 RLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSEELARTIDELEQKAYEIA 578

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L+   F + G  +   T      T + VL       P    +  +R  
Sbjct: 579 -GESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLPKIILQHRSL 637

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A                               +         P     +  R H    Q 
Sbjct: 638 A-------------------------------KLKSTYTDKLPLMVNAQTGRVHTSYHQA 666

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                   +S+P+   I         +R   IA EG+K++ AD + IE R++A ++ ++ 
Sbjct: 667 NAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAHLSQDKG 726

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F+V   +VT +QR   K +   L Y              G+
Sbjct: 727 LLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIY--------------GM 772

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +          +A+ +     + +P               V     +     
Sbjct: 773 SAFGLARQLDIPRG-----EAQKYIDTYFKRYP--------------GVLNYMEET---- 809

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +A    +     +  R+                 L LP+ +         +R
Sbjct: 810 --------RAIAADLGYVSTLYGRR-----------------LYLPAIK---------DR 835

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHD 630
           + +        R+           +Q  + DI+ + M+N        T     +++ VHD
Sbjct: 836 NAM-------RRQAAERA-AINAPMQGTAADIIKKAMINVADWIANETDGEITLIMQVHD 887

Query: 631 EIVCETP-DTDEFNASMLYHLMTSN 654
           E+V E   D  E     +  LM   
Sbjct: 888 ELVFEVDSDKAEALQEKVCQLMAEA 912


>gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ]
 gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ]
          Length = 908

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 170/532 (31%), Gaps = 69/532 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           L+  LE+     V  ++ ++  VL       I +       +L     +   +       
Sbjct: 384 LRPILEDPARAKVGQHAKYDMNVLAHY---GIEVRGVAYDTMLESYVLDSTATRHDMDSL 440

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI--- 171
           ALK   Q     +++  +  K  T + +          A    G Y   D  VT  +   
Sbjct: 441 ALKYLGQGTIRFEDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQC 490

Query: 172 -FKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            +++LE +          E  L  +   I   G  VD  L    +  +  +  +L++E  
Sbjct: 491 LWQKLEAIPALAKVLKEIEMPLVPVLARIERHGALVDAKLLGEQSLELGEKLQQLEREAH 550

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            L  G   +    ++L   L+ + GL +   T         S      +        +  
Sbjct: 551 ELA-GEPFNLASPKQLGAILYDKLGLPVLSKTAKGQPSTAESVLADLAEQGYPLPQVIMR 609

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            RS                           ++         P Q  PR  R H    Q +
Sbjct: 610 HRS--------------------------LNKLKGTYTDKLPQQINPRTGRIHTSYHQAV 643

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   +A EG +LV AD + IE R++A +A +   
Sbjct: 644 TATGRLSSSDPNLQNIPIRTTEGRRIRQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSL 703

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F VAP  V+ DQR   K +   L Y   A     +A   G+ 
Sbjct: 704 LHAFRNDLDVHRATAAEVFGVAPEAVSADQRRSAKAINFGLIYGMSAF---GLARQIGVE 760

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +    A               E     A E  ++ T   R +    + HS+  
Sbjct: 761 RKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGYVETLFGR-RLYLPEIHSKNG 813

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
            L     +        G A    KR  V +     +   +  ++L     LV
Sbjct: 814 ALRKAAERTAINAPMQGSAADIIKRAMVTVDAWLLESGLDARMILQVHDELV 865


>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
 gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
          Length = 922

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 128/708 (18%), Positives = 216/708 (30%), Gaps = 189/708 (26%)

Query: 6   IDFETRSPIDLTKCGICKYAE----DVCV-------ILFAFGFDDHPVELWDCVHDPVMP 54
           ID ET + ID         AE       V       +  A  ++  PV+L        + 
Sbjct: 348 IDTET-TSID------YMAAELVGLSFAVEAGKGAYLPVAHDYEGAPVQL----DRDTVL 396

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSA 108
             LK  LE+T    V  N  ++ +VL            D  +  +       R N    A
Sbjct: 397 AKLKPLLEDTAPRKVGQNLKYDMSVLAKYGIALNGIAFDTMLESYCFNSTAGRHNMDDMA 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           LK +G        K    +++  +  K +T   +                 Y   D  +T
Sbjct: 457 LKYLG-------HKTIHFEDIAGKGAKQKTFNQI----------PLEEAAPYAAEDADIT 499

Query: 169 REIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P   +           E+ L  +   +   G  +D    H  +  +      
Sbjct: 500 LRLHQHLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQLHQQSSEIATTLDS 559

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273
           L+Q+   +  G V +    ++L+   F + G  +   T      T + VL       P  
Sbjct: 560 LEQQAHEIA-GEVFNLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEEVLQELALDYPLP 618

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R  A                               +         P    P   
Sbjct: 619 KIILEHRSLA-------------------------------KLKNTYTDKLPQLVKP-SG 646

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +T      +SDP+   I         +R   IA EG KL+  D + IE R+
Sbjct: 647 RVHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPEGYKLLAIDYSQIELRI 706

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  L+AF  G+D++  T A  F V    VT +QR   K +   L Y  G  AF
Sbjct: 707 MAHLSQDKGLLEAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNFGLIY--GMSAF 764

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A    +                   +A+ +       +P               V +
Sbjct: 765 -GLAKQLDIGR----------------AEAQEYIDRYFHRYP--------------GVLE 793

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +             +A     E  + ++ R+                   LP   + 
Sbjct: 794 YMDRT------------RAQAHDKEYVETLMGRRLH-----------------LPEINAR 824

Query: 569 V-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---- 623
              R     R+ +N                     Q  + DI+ + M+            
Sbjct: 825 NKMRQQAAERTAINAPM------------------QGTAADIIKKAMLLVADYLSQQAED 866

Query: 624 ---IVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEG 667
              +++ VHDE+V E  +   E +   L  LM+        +PL AEG
Sbjct: 867 EIHLIMQVHDELVFEVREGVAEQHKDALCELMSQAAE--LDVPLLAEG 912


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 110/634 (17%), Positives = 203/634 (32%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASQYAAEDADVTMKLHQV 540

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   K           E  L  +   I   G  +D       +  ++   ++L+Q + 
Sbjct: 541 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P     +  R H    Q +
Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA +G K+V AD + IE R++A +A ++  
Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 753

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                             DA+ +     + +                           V 
Sbjct: 811 R----------------ADAKKYMELYFQRY-------------------------PAVQ 829

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++              K+  V  ++              GR L   ++ ++  
Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   KA        +++ VHDE+V
Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914

Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946


>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
 gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2]
 gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
 gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
 gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
          Length = 930

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 130/705 (18%), Positives = 222/705 (31%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNNIAGDAMLASYIIESHLGHGL 459

Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + G  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +  RL   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    PR +
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A  G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF++GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622
                 G  R+ +N                     Q  + D++   M+N         G 
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMINVRNWLSDGIGS 874

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919


>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
 gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
          Length = 930

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/550 (16%), Positives = 178/550 (32%), Gaps = 74/550 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + +  +     T   +                EY   D  VT      ++
Sbjct: 467 RYLGHETIAFESIAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPKILVEHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +      + +   + F   ++E        +   G             +S 
Sbjct: 782 ISRPDAQKYMD--LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRL-----YLPDINSS 834

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +       +        G A    KR  + L  + +   N+ +++     LV+      
Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEK 894

Query: 577 RSYLNTTTRQ 586
            ++     +Q
Sbjct: 895 VAFFREQIKQ 904


>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
 gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
          Length = 930

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 95/539 (17%), Positives = 179/539 (33%), Gaps = 78/539 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+     V  N  F+R +L+   N  I +       +L     N +       
Sbjct: 405 ELLKPLLEDEKAKKVGQNLKFDRGILQ---NYGIELRGIAYDTMLESYILNSVAGRHDMD 461

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 462 SLSDRWLKHKTVTFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 511

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   K           E  L  +   I   G  +D A+ H  ++ + +  ++L+Q+
Sbjct: 512 LKMWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHKHSEELALRLSELEQK 571

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 572 AHEIA-GEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 630

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                          Q+ G ++         P    P+ SR H 
Sbjct: 631 -------------------------------QYRGLAKLKSTYTDKLPLMINPKTSRVHT 659

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +       +++P+   I         +R   IA +   +V AD + IE R++A +
Sbjct: 660 SYHQAVAATGRLSSTEPNLQNIPVRNEEGRRIRQAFIAPKDYLIVSADYSQIELRIMAHL 719

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT DQR   K +   L Y   A     ++
Sbjct: 720 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINFGLIYGMSAF---GLS 776

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +        +      E +     +    +    E    +   G            
Sbjct: 777 RQLNIPRKESQKYMD--LYFERYPGVLEYMERTRAQAKEKGYVETLDGRRL-----YLPD 829

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
             S  +       +A       G A    KR  + +  +++KDK  + +++     LV+
Sbjct: 830 ITSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELVF 888



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
           Q  + DI+   M+         K    +++ VHDE+V E    D E  +  ++ LM 
Sbjct: 851 QGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELVFEVHHEDLEAVSKKIHELME 907


>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
 gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
          Length = 928

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 194/621 (31%), Gaps = 141/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+ +   V  N  ++R +L    N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDENAHKVGQNLKYDRGILA---NYGIELRGITFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           +  L  +   +   G  +D A+ H  ++ +     +L+Q+
Sbjct: 510 LKMWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDPAVLHKHSEELTQRLNELEQK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P     +  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINKKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIYGMSAF---GLA 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +                   +A+ +     E +P                      
Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  +   + +   Q  E G                        +    GR L   D
Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + ++         +        G   + I +A+   I  +G +   +    +++ VHDE+
Sbjct: 828 IKSSNGARRAGAERAAINAPMQGTAADIIKRAM---IAVDGWLQTEQPRVRMIMQVHDEL 884

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           V E    D E  +  ++ LM 
Sbjct: 885 VFEVHKDDLESVSKKIHQLME 905


>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02]
 gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
 gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
 gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19]
 gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11]
 gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18]
 gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1]
 gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
 gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332]
 gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679]
 gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035]
 gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 908

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 130/705 (18%), Positives = 222/705 (31%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 331 TIGIDTET-TSLD---------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 380

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 381 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNNIAGDAMLASYIIESHLGHGL 437

Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + G  L L +   E         C     +            A     EY   D    
Sbjct: 438 DELSGRWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 484

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +  RL   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 485 LRLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLE 544

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 545 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 603

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    PR +
Sbjct: 604 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 632

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A  G  +V AD + IE R+
Sbjct: 633 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 692

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF++GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 693 MAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 750

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 751 -GLAKSLGIDNLSAKNFID----------------------------------------- 768

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 769 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 810

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622
                 G  R+ +N                     Q  + D++   M+N         G 
Sbjct: 811 NANARAGAERAAINAPM------------------QGTASDLIKRAMINVRNWLSDGIGS 852

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 853 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 897


>gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619]
 gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619]
          Length = 915

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 117/688 (17%), Positives = 204/688 (29%), Gaps = 158/688 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D     +   A+   ++  +F  + H        HD    P  L         K  L++ 
Sbjct: 339 DTETTSLD--AQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLQDP 396

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N+ ++  +L    +  I +       +L     N   +       A K     
Sbjct: 397 AKEKVGQNAKYDINILAN-GSPAIQMQGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHA 455

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176
               +++  +  K  T   +               G Y   D  +T  + + L+      
Sbjct: 456 TIAFEDIAGKGAKQLTFNQI----------HLDKAGPYAAEDADITLRLHQALQARLAQT 505

Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               P+    E  L  +   I  +G  VD AL    +  + V+   L++    L  G   
Sbjct: 506 PSVLPVLMDIEMPLVPVLAKIERQGALVDAALLQIQSGELGVKMADLERRAYELA-GEEF 564

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L + L+ + G+ +   T         +      +        +          
Sbjct: 565 NLGSPKQLGSILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGYPLPEVL---------- 614

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                           +Q+   S+         P Q  PR  R H    Q +       +
Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I         +R   IAS G KL+ AD + IE R++A +A ++  L AF    
Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNNL 718

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  F VA   VT DQR   K +   L Y   A     +A   G++       +
Sbjct: 719 DVHRATAAEVFGVALEAVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                        +  +R   +   + +
Sbjct: 776 D--------------------------------------------RYFARYPGVLAYMER 791

Query: 527 AFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
              Q  E G    +  +R  +P +  K          P+ R       G  R+ +N    
Sbjct: 792 TRAQAAEQGFVETLFGRRLYLPDINAKN---------PALRK------GAERTAINAPM- 835

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639
                            Q  + DI+   M+N             ++L VHDE+V E  + 
Sbjct: 836 -----------------QGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVRED 878

Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                   +   M+        +PL  E
Sbjct: 879 LVDQVKDEIRGQMSKAAQ--LDVPLLVE 904


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62
           D ET   ID  K G+         +  +F   ++         +      + +    AL+
Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 402

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           N     +  N  F+  VL+     ++ +   +   ++A     P         A      
Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           +    +ELI      +    L  RN P          EY   D  +T ++     P   K
Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADITLKLKNYFAPELKK 510

Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           E            L Y+   +   G  +D       +  +     KL+QE+  L  G   
Sbjct: 511 EGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GTEF 569

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    +++   LF    L      T+T    T + VL   +   P   ++          
Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLLE-------- 621

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                  + G  +         P    P+  + H   +Q +T  
Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I     +   +R   I          AD + IE R++A ++G+   ++
Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIE 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++G D++  T A+ + +   +VT D R   K     + Y         +A   G+  +
Sbjct: 719 AFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L+        +       +   E   + A E  ++ T  +R K+     +S  + +
Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLSDINSHNAVV 828

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
                +        G A    K   V +    +++     ++L     L +      
Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 885


>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 930

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/539 (17%), Positives = 175/539 (32%), Gaps = 78/539 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+ +   V  N  ++R +L+   N  I +       +L     + +       
Sbjct: 405 ELLKPILEDDNALKVGQNLKYDRGILQ---NYGIELRGIAFDTMLESYILDSVAGRHDMD 461

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 511

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   K           E  L  +   I   G  +D  + H  +  +    T+L+Q+
Sbjct: 512 LKMWPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTELEQK 571

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              L  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 572 AHELA-GEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 630

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 631 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 659

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +       ++DP+   I         +R   IA +   +V AD + IE R++A +
Sbjct: 660 SYHQAVAATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHL 719

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     ++
Sbjct: 720 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINFGLIYGMSAF---GLS 776

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +        +      E +     +    +    E    +   G            
Sbjct: 777 RQLNIPRKESQKYMD--LYFERYPGVLEYMERTRAQAKEKGYVETLDGRRL-----YLPD 829

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
             S  +       +A       G A    KR  + +  +++K+K  + +++     LV+
Sbjct: 830 IKSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVF 888


>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
 gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
          Length = 952

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 125/706 (17%), Positives = 218/706 (30%), Gaps = 180/706 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 374 TIGIDTET-TSLD---------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 423

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 424 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 480

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 481 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFA 527

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 528 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 587

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  ++  G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 588 QEAYAVA-GQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 646

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 647 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 675

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 676 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 735

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 736 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 793

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +    +                                          
Sbjct: 794 -GLAKSLGIDNLSAKTFID----------------------------------------- 811

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 812 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 853

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621
                 G  R+ +N                     Q  + D++   M++           
Sbjct: 854 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLK 895

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +++ VHDE+V E P+ + +     L  +M         +PL AE
Sbjct: 896 SKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 941


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 117/689 (16%), Positives = 214/689 (31%), Gaps = 149/689 (21%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID    G+    +   +I  +F             HD P  P  L         K  LE+
Sbjct: 382 IDTETDGLD--TKTAHLIGISFAVAPGKAAYLPLGHDYPEAPAQLNRDKVLALFKPLLED 439

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
                V  N  F++++L    N  I +       +L     N +         + +  + 
Sbjct: 440 PQALKVGQNLKFDQSLLA---NYGIKLQGIAFDTMLESYVFNSVAGRHDMDSLSERHLNH 496

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177
           K    +++  +     T   +                 Y   D  VT  +   L P    
Sbjct: 497 KTLSFEDIAGKGKNQLTFNQI----------PLEQAAIYAAEDADVTLRLHLALWPKLKE 546

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                  L   E  L  +   +   G  +D  +    ++ + +  T+L+++   +  G  
Sbjct: 547 NPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDILLNHSKELQLRLTELEKKAHDIA-GET 605

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+T L+ +  L +   T      T + VL+      P    +  +R      
Sbjct: 606 FNLNSTQQLQTILYEKQTLPVLKKTPKGAPSTNEAVLAELALDYPLPKIILEHRSL---- 661

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      ++         P    P   R H    Q +T  
Sbjct: 662 ---------------------------TKLKTTYTDKLPLMIHPLSGRVHTSYHQAVTST 694

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + DP+   I         +R   IA  G ++V AD + IE R++A ++ +Q  L A
Sbjct: 695 GRLSSRDPNLQNIPVRNEEGRRIRHAFIAPRGYQIVAADYSQIELRIMAHLSQDQGLLNA 754

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D+++ T A  F +  +QV+  QR   K +   L Y   A    +      LN++ 
Sbjct: 755 FSEGQDIHLITAAEVFGLPVSQVSAQQRRSAKAINFGLIYGMSAFGLARQ-----LNVSR 809

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
           F      N     +    ++ +       E A+++ ++ T   R +      HS+ +   
Sbjct: 810 FEAERYMNLYFTHYPKVLDYMQRT----REEAVKNGYVTTLEGR-RLYLADIHSKNANRR 864

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +        G A    KR  + +                       D    +    
Sbjct: 865 KAAEREAINAPMQGTAADIIKRAMIHI-----------------------DFWLQQEEQK 901

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
              +Q +R           I+Q                        VHDE+V E  D+  
Sbjct: 902 LAPKQKSR--------VNLIMQ------------------------VHDELVFEVHDSVL 929

Query: 642 FNA-SMLYHLMTSNPSWAKGLPLKAE-GY 668
            +A   +  LM  +    + L LK + G+
Sbjct: 930 KSATDKIRELMEKS---TQNLLLKVDIGF 955


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 110/642 (17%), Positives = 195/642 (30%), Gaps = 156/642 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+  V  V  N  F+  VL       I +       +L     + +       
Sbjct: 407 ERLKLLLEDEKVLKVGQNLKFDMGVLARY---GINLRGIAYDTMLESYVLDSVGGRHDMD 463

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A +    K    +E+  +     T   +                 Y   D  VT  + 
Sbjct: 464 NLADRYLGHKTITFEEIAGKGKNQLTFNQIAL----------AQAALYAAEDADVTLRLH 513

Query: 173 KRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             + P   +  EL  +              I   G  +D A+    +Q +     +L+ +
Sbjct: 514 LAMWPQLKQSAELLRVFNEIDMPLVPVLSHIERTGVLIDPAILSVHSQELTKRLGELEIQ 573

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              L  G   +   L++L+  L+ +  L +   T     +T + VL+      P    + 
Sbjct: 574 AHELA-GEPFNLVSLKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVIL 632

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G ++         P    P   R H 
Sbjct: 633 E-------------------------------YRGLAKLKTTYTDKLPLMINPVSGRVHT 661

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      +SDP+   I         +R   IA EG ++V AD + IE R++A +
Sbjct: 662 SYHQAVTATGRLSSSDPNLQNIPVRNDEDRRIRQAFIAPEGYRIVAADYSQIELRIMAHL 721

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   LKAF  G+D++  T A  F V   +V  +QR   K +   L Y   A     +A
Sbjct: 722 SQDAGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIYGMSAF---GLA 778

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+                                                  +   +
Sbjct: 779 RQLGVPRGEAQ--------------------------------------------RYMDR 794

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R   + + + +  +Q  E G       RR               L LP  RS     
Sbjct: 795 YFERYPGVLDYMERTRQQAAEQGYVTTLDGRR---------------LYLPDARS----- 834

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIV 625
                      +  + R+           +Q  + DI+   M+               ++
Sbjct: 835 -----------SNGMRRKAAERA-AINAPMQGTAADIIKRAMIEVDAWIQEQGQPLVRMI 882

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E  ++  + ++  +  LM  + + A  +PLK +
Sbjct: 883 MQVHDELVFEVHESVIDASSQRIRELMEGSMALA--VPLKVD 922


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 120/695 (17%), Positives = 223/695 (32%), Gaps = 182/695 (26%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA-- 60
           + ID ET S           Y E   ++  +F  +          HD    P+ L +A  
Sbjct: 341 IAIDTETTSLN---------YME-AKLVGISFAVEAGKAAYLPLAHDYIDAPEQLDKAVV 390

Query: 61  -------LENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPS 107
                  LE+ ++  V  N  ++ ++             D  +  ++   V ++ N    
Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFANAGICLLGVQFDTMLESYVFNSVASKHNMDDL 450

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           ALK +G        K    +E+  +  K  T   +          +      Y   D  +
Sbjct: 451 ALKYLG-------HKNISFEEIAGKGVKQLTFNQI----------SLETAAPYAAEDADI 493

Query: 168 TREI----FKRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T  +    + RLE L          E  L     TI  +G  +D  L    ++ +  +  
Sbjct: 494 TLRLHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQGVLIDSMLLGQQSEELARKID 553

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272
           +L+ +   +  G   +    ++L+   F + G  +   T      T + VL       P 
Sbjct: 554 ELEHKAHEIA-GQAFNLSSPKQLQELFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 612

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +  +R  A                               +         P     + 
Sbjct: 613 PKIILEHRSLA-------------------------------KLKSTYTDKLPLMVNAQT 641

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q         +S+P+   I         +R   IA EGKK++ AD + IE R
Sbjct: 642 GRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELR 701

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++ ++  L AF  G+D++  T A  F+V  ++VT DQR   K +   L Y  G  A
Sbjct: 702 IMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIY--GMSA 759

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
           F  +A    +  +                +A+++     + +P               V 
Sbjct: 760 F-GLAKQLDIPRS----------------EAQSYIDTYFKRYP--------------GVL 788

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K   +             +A    +     +  R+                 L LP+ + 
Sbjct: 789 KYMEET------------RAIAADLGYVSTLFGRR-----------------LYLPAIK- 818

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKA 620
                   +R+ +        R+           +Q  + DI+ + M+N        T  
Sbjct: 819 --------DRNAM-------RRQAAERA-AINAPMQGTAADIIKKAMINIANWIETETDG 862

Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654
              +++ VHDE+V E  +    +  + +  LM + 
Sbjct: 863 EIIMIMQVHDELVFEVDEAKADSLQAKVCELMAAA 897


>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
 gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
          Length = 929

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/538 (16%), Positives = 174/538 (32%), Gaps = 78/538 (14%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            LK  LEN  +  +  N  F++ V+       I +   +   +L     + +        
Sbjct: 405 QLKPLLENEAIGKIGQNLKFDKGVMARY---GIDLRGIVFDTMLESYVLDSVAGRHDMDS 461

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            + +    K    +E+  +     T   +                 Y   D  VT  + +
Sbjct: 462 LSERYLQHKTITFEEIAGKGKNQLTFNQI----------PLEQAAVYAAEDADVTLRLHE 511

Query: 174 RLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L      +QEL             +   +   G  +D  +    +Q +     +L+   
Sbjct: 512 TLWAKLEPQQELCQVFKNIDMPLVPVLSRMERTGVLIDTTILAEHSQELTQRLAELEVRA 571

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L   L+ +  L +   T      T + VL+      P    +  
Sbjct: 572 HELA-GEAFNLASPKQLGAILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPLPKLILE 630

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R  A                               +         P    P   R H  
Sbjct: 631 HRELA-------------------------------KLKSTYTDKLPQMINPLTKRVHTS 659

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      +SDP+   I         +R   IA +G +++ AD + IE R++A ++
Sbjct: 660 YHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPQGYQILAADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   LKAF  G D++  T A  F +   +VT +QR   K +   L Y   A     ++ 
Sbjct: 720 RDAGLLKAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINFGLIYGMSAF---GLSR 776

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+  N     +        + +     +   E   + A +  ++ T  +  +      
Sbjct: 777 QLGIARNEAQKYMN------LYFERYPGVQEYMERTRQQAADQGYVST-LDGRRLYLPDI 829

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           HSR +       +A       G A    K+  + +  +++++K    +++     LV+
Sbjct: 830 HSRNAMSRKAAERAAINAPMQGTAADIIKKAMIAIDDWLQQEKPLATMLMQVHDELVF 887


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 201/632 (31%), Gaps = 162/632 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110
           LK  LE+  +  V  N  ++ ++L            D  +  ++   V ++ N    ALK
Sbjct: 406 LKPLLEDPSLLKVGQNLKYDMSILANVGIALKGVAFDTMLESYVFNSVASKHNMDDLALK 465

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +G        K    +E+  +  K  T   +                 Y   D  +T  
Sbjct: 466 YLG-------HKNISFEEIAGKGVKQLTFNQI----------PLETAAPYAAEDADITLR 508

Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P   K           E  L  +   I  +G  +D  L    +  +  +  +L+
Sbjct: 509 LHQHLWPRLQKASELASVFTDIELPLVSILSQIERQGVLIDSMLLGQQSDELARKIDELE 568

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275
           Q+   +  G   +    ++L+   F + G  +   T      T + VL       P    
Sbjct: 569 QKAYEIA-GEPFNLGSTKQLQALFFEKLGYPVLKKTPKGAPSTAEEVLVELALDYPLPKI 627

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R                                 S+         P     +  R 
Sbjct: 628 ILEHRSL-------------------------------SKLKSTYTDKLPLMVDGKTGRV 656

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H    Q I       +S+P+   I         +R   +A EG+K++ AD + IE R++A
Sbjct: 657 HTSYHQAIAATGRLSSSEPNLQNIPIRTEEGRRIRHAFVAPEGRKILAADYSQIELRIMA 716

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  L AF  G+D++  T A  F+V  ++VT +QR   K +   L Y  G  AF  
Sbjct: 717 HLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIY--GMSAF-G 773

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A    +                   +A+ +                             
Sbjct: 774 LARQLDIPR----------------HEAQQYIDIYF------------------------ 793

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +++  V +   +   A  +  +   + +  +R  +P +   KD+N +            
Sbjct: 794 -KRYPGVLKYMEDTRAAAAE--QGYVSTLYGRRLYLPAI---KDRNAMRRQ--------- 838

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYD 623
                 R+ +N                     Q  + DI+ + M+N        T+    
Sbjct: 839 ---AAERAAINAPM------------------QGTAADIIKKAMINIAQWIETETQGEIT 877

Query: 624 IVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN 654
           +++ VHDE+V E       +    +  LM   
Sbjct: 878 MIMQVHDELVFEVDADKADSLKLKVCELMAQA 909


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 118/660 (17%), Positives = 207/660 (31%), Gaps = 145/660 (21%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
             D  PV+L        +   L   L + D      N+ F+R +L       + +   + 
Sbjct: 427 SADSQPVQLPL----ETVVTALAPWLGSEDHPKALQNAKFDRLILMRH---GLALDGVVI 479

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             +LA        L+       L      E         +   +  L  + +        
Sbjct: 480 DTLLADY------LRDAAAKHGLELMAEREF------GFQPTAYSDLVGKKQTFADVPLE 527

Query: 156 LFGEYCKGDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
              +YC  DV VTR +             + L  L   EQ L  +   +   G  +DV  
Sbjct: 528 AASQYCAMDVHVTRRLALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPY 587

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTC-- 259
              L+  +     +L+ E +    G+  +    ++L   LF   GL  +    T+T    
Sbjct: 588 LQELSTEMGTTLERLETEAKE-AAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGYST 646

Query: 260 -QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL       P    V  +R+                                S+   
Sbjct: 647 DATVLEKLGDDHPVVPLVLEHRVL-------------------------------SKLKS 675

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373
                 P        R H + +Q +T      +S+P+   I      S  +R   +   G
Sbjct: 676 TYIDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQAG 735

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE R+L  ++GE+   +A+ +G+D++  T      +   +V+ D+R +GK
Sbjct: 736 WTLLSADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLL--LDKDEVSADERRLGK 793

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y  GA   Q+ A  TG++ +     +  +   + +     F     E     A
Sbjct: 794 TINFGVIYGMGA---QRFARETGVSQSEAKDFL--SKYKQRYPKVFAFL----ELQERLA 844

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           +   ++ T   R +                                              
Sbjct: 845 LSRGYVETILGRRRP------------------------------------------FHF 862

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
           D+N L  +L         ++  + +       Q  R            +Q  S DI+   
Sbjct: 863 DRNGLGRLLGKE----PLEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVA 912

Query: 614 MMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           M+    A         ++L VHDE+V E  PD  E    M+   M +       +PL AE
Sbjct: 913 MVQLQAALTSQGLPARLLLQVHDELVLEVEPDALETTRDMVVRTMENAVK--LTVPLVAE 970


>gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15]
 gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
          Length = 892

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 116/700 (16%), Positives = 204/700 (29%), Gaps = 168/700 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP--- 54
           T  +D ET S   L             ++  +  + DH        H        +P   
Sbjct: 314 TFAVDLETTSLNPLE----------AEIVGISLSYRDHEACYIPVGHFYLGAPEQLPRRR 363

Query: 55  --QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
               L   L +  +  V  N  ++  V +      I +    C  ++A     P  S   
Sbjct: 364 VLDALTPLLIDPKIRKVGQNLKYDYQVFRRH---GIELGGVWCDTMVASYLLNPVRSGHG 420

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A++    KM   +E+  +  K + +           +        Y   D      
Sbjct: 421 LDSLAVEHLDHKMISYEEVAGKG-KEQVN---------FAQVPVEKASTYSCEDSDAAWL 470

Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + +   P              E  L  +   +   G  +D+ L   L+     +  +L+ 
Sbjct: 471 LHRLFLPRVAVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLGELSAGFGKQLAELEG 530

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC--QRVLSSNKKLTPQAIQVFN 278
            +  L      +    ++L   LF +  L     T+T       +   ++L     ++  
Sbjct: 531 RITGLA-PEPFNLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVEELERLAEAGHEIAA 589

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                        LQ+ G ++         P    P   R H  
Sbjct: 590 L---------------------------ILQYRGLAKLKSTYTDALPKLVQPATGRVHTS 622

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T+     +S+P+   I         +R   IA EG  L+ AD + IE RVLA  +
Sbjct: 623 YNQTVTNTGRLSSSEPNLQNIPVRTEEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFS 682

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++    AF   ED++  T A  F + P  VT + R   K +   + Y  GA +    A 
Sbjct: 683 EDRVFCDAFAKDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSL---AK 739

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+                                                    +  +
Sbjct: 740 QLGI-----------------------------------------ATKVAREFIDNYFAR 758

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           H       +   +  E+                        K ++  +L  GR L   D+
Sbjct: 759 HPGARAFLDGCVREAEE------------------------KGHVTTLL--GRRLPIPDI 792

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
            +     N   R   +            +Q  + DI+ E M+  T        G  +++ 
Sbjct: 793 KSA----NGNIRAFAQRNA-----VNYPIQGSAADIIKEAMVKVTARMRRDVVGSRLIMQ 843

Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           VHDE+V E P  +      L    M    S    +PLK +
Sbjct: 844 VHDELVFEVPKGEVVAMEQLVRREMEHAVS--LRVPLKVD 881


>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301]
 gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301]
          Length = 928

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 110/633 (17%), Positives = 191/633 (30%), Gaps = 144/633 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115
           +K  LEN  +  V  N  +++ VL    N  I ++     T++ +              A
Sbjct: 406 IKPILENAAIKKVGQNFKYDQHVLA---NHGIALNGIAHDTMLESYVFESHKTHGMDALA 462

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +    +E+  +  K  T   +             +  EY   D  +T ++ + +
Sbjct: 463 ERHLGIQTISFEEVAGKGAKQVTFNQVTV----------EVASEYAAEDADITLQLHQAM 512

Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P            S  E     +  TI   G  +D  + +  +  +  +   L+ +   
Sbjct: 513 YPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLIDRDMLNIQSNEIGAKLVALENQAYE 572

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF + G+     T +    T + VL       P    +   R
Sbjct: 573 LA-GQPFNLGSPKQLQEILFDKLGIKPTKKTPSGAPSTDEDVLQELALDHPLPKVLLEYR 631

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G ++         P     +  R H   +
Sbjct: 632 -------------------------------GLAKLKSTYTDKLPKMINAQTGRVHTSYN 660

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   IA +G  +V AD + IE R++A ++ +
Sbjct: 661 QAVAITGRLASSDPNLQNIPVRSAEGRRIREAFIAPKGSHIVSADYSQIELRIMAHLSKD 720

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF   ED++  T A  F V    V  +QR   KV+   L Y   A     +A   
Sbjct: 721 EGMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMSAF---GLAQNL 777

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKH 514
            +     A  ++   A           R   +N  E A +  ++ T   R  + W  + +
Sbjct: 778 NIERGAAASYIERYFARYP------GVREYMQNTREIAKQKGYVETYFGR--RLWVPEIN 829

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           S          +A       G A    K   +                            
Sbjct: 830 SPNGTRRAGAERAAINAPMQGTAADLIKLAMI---------------------------- 861

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                      +  R      KL                           ++ VHDE+V 
Sbjct: 862 --------AVDKWLRHEKLQTKL---------------------------IMQVHDELVL 886

Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E PD + E     L  LM +       +PL AE
Sbjct: 887 EVPDNELELVKQKLPELMQNVAK--LDVPLLAE 917


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 107/628 (17%), Positives = 209/628 (33%), Gaps = 132/628 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LEN  +  +  N  ++  V+K     +I +  +  T++L+       AL+A     
Sbjct: 399 LKPILENQAILKIGQNIKYDWLVMKQY---NIVMRSFDDTMLLS------YALEAGISTH 449

Query: 117 KLSSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +        G + I    K  T+     +     +   +    Y   D  +T  +++ L
Sbjct: 450 GMDILSERWLGHKSITY--KDLTYNG--RKVNSFAQIDLKQATLYAAEDADITLRLWQVL 505

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P    ++           L  +   + +RG  VD  +   L+  +      L++E+  L
Sbjct: 506 KPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQL 565

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF + GL     T+       +   +       +         
Sbjct: 566 -VGEKFNIASPKQLGDILFGKIGLPGGSKTKNGQWSTSAQTLEELAAEGHILP------- 617

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  + +   ++         P   LP+  R H       T 
Sbjct: 618 -------------------RKIVNWRQLTKLKSTYTDALPSYILPKTGRVHTNYSLATTS 658

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +S+P+   I         +R+  IAS+G  L+ AD + IE RVLA  A      +
Sbjct: 659 TGRLSSSEPNLQNIPVRTAEGRKIRTAFIASKGYLLLSADYSQIELRVLAHFADITALKE 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A+ F VA   ++ + R   K +   + Y         +A+  G++  
Sbjct: 719 AFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINFGIIYGISPF---GLANQLGISRK 775

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +H ++     E +   +++    +     H   +                        
Sbjct: 776 EASHYIQ--LYFERFPGIKDYMEKTKMFARHHGYVE------------------------ 809

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             I  +R   P +             P  R+       N R+ +
Sbjct: 810 -----------------TIFGRRIHCPEIKAVN---------PQVRAF------NERAAI 837

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           N   +         G   + I +A+   I  E  +   K    ++L VHDE++ E P ++
Sbjct: 838 NAPIQ---------GSAADIIRRAM---IQMENALEKEKLSAKMLLQVHDELIFEVPKSE 885

Query: 641 EFNASMLY-HLM--TSNPSWAKGLPLKA 665
               ++L   +M   + P+ +  +PL+ 
Sbjct: 886 STKTAILVRKVMENATMPALSLSVPLEV 913


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 100/625 (16%), Positives = 193/625 (30%), Gaps = 151/625 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAYAL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQ 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                                           + Q++  
Sbjct: 782 ISRPDAQKYMD-----------------------------------------LYFQRYPS 800

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575
           V +   ++ +A  +     + +  R+                 L LP   S    R  G 
Sbjct: 801 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
            R  +N                     Q  + DI+   M+   +        ++++ VHD
Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 884

Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654
           E+V E   +   F    +   M + 
Sbjct: 885 ELVFEVRSEKVAFFREQIKQHMEAA 909


>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
 gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
          Length = 916

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/538 (18%), Positives = 175/538 (32%), Gaps = 79/538 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           L   L +     V  N  ++++VL       + ++      +L     N + +       
Sbjct: 392 LGPLLADEQRPKVGQNLKYDKSVLARA---GLELNGIKFDTMLESYVLNSVGTRHDMDSL 448

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           ALK    K    +E+  +     T   +                 Y   D  +T  + + 
Sbjct: 449 ALKYLGHKNISFEEIAGKGKNQLTFNQI----------ELDKAAPYAAEDADITLRLHQM 498

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   I   G  +D  +    +  +     +L++E  
Sbjct: 499 LWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQSFEIGKRLDELEKEAH 558

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+  LF +  L +   T      T + VL       P    +  +
Sbjct: 559 ELA-GEAFNLSSPKQLQVILFEKHELPVIKKTPKGAPSTAEEVLQELAHDYPLPKLIIEH 617

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P        R H   
Sbjct: 618 R-------------------------------GLSKLKSTYTDKLPLMVNADTQRVHTSY 646

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q IT      ++DP+   I         +R   +A++G K+  AD + IE R++A ++ 
Sbjct: 647 HQAITATGRLSSTDPNLQNIPIRTEEGRKIRQAFVAAKGYKIAAADYSQIELRIMAHLSQ 706

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G D++  T A  F V+ A+VT D R   K +   L Y   A     +A  
Sbjct: 707 DKGLLNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIYGMSAF---GLARQ 763

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +  +   H +      + +E       +M E+  E A E  ++ T   R +    + +
Sbjct: 764 LDVPRHEAQHYID-----KYFERFPGVLEYM-ESTREKAAELGYVETLFGR-RLYLPEIN 816

Query: 515 SRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +R         +A       G A  II +    V      +  N + L++     LV+
Sbjct: 817 ARNGASRKAAERAAINAPMQGTAADIIKKAMITVNAWVKAQPANTVRLLMQVHDELVF 874


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 119/664 (17%), Positives = 218/664 (32%), Gaps = 155/664 (23%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           L D +        L   L +++   V  N+ ++R +        IP+   I   +LA   
Sbjct: 441 LIDVIKG------LSPWLGSSEHPKVLQNAKYDRLI---FLQYGIPLEGVIMDTLLADYL 491

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCK 162
                        + S + M +       F         +  +++     +      YC 
Sbjct: 492 --------CDVTHRHSLEAMAK-----REFGFTPTNFNEIVGKDETFKNVSISTASLYCG 538

Query: 163 GDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
            DV +TR+++            K +E L   EQ L  +   +  RG  +D+     L+  
Sbjct: 539 MDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKELSIE 598

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSS 265
           ++     +++    +      +    ++L   LF + GL  +    T+T   T   VL  
Sbjct: 599 LNKALKNIEKSAYKIAK-TDFNLSSPKQLGEVLFEQLGLDKKKSRRTKTGWSTDANVLER 657

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +   P    V  +R                                 S+         P
Sbjct: 658 LQGDNPIVPLVIEHR-------------------------------TLSKLLSTYVEALP 686

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
                +  R H + +Q +T      +S+P+   I      S  +R   +  EG +L+ AD
Sbjct: 687 QLVEAQTGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPREGWQLLSAD 746

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA ++GE    +A+  G+D++  T      +    +T ++R +GK +   + 
Sbjct: 747 YSQIELRILAHLSGEASLQEAYRNGDDVHALTAKIL--LDKESITSNERRLGKTINFGVI 804

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y  G    Q+ A +TG++ +     +  N   E + +  ++     E     A+   F+ 
Sbjct: 805 YGMGV---QRFARSTGVSQSEAKDFL--NRYKERYTNVFSYL----ELQERLALSKGFVE 855

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           T                                    I+ R+R          DKN L  
Sbjct: 856 T------------------------------------ILGRRRH------FHFDKNGLGR 873

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNA 617
           +L                 L    +   R      +L       +Q  S DI+   M+  
Sbjct: 874 LLGKNP-------------LEIDLKLARRAGMEAQQLRAAANAPIQGSSADIIKVAMVKL 920

Query: 618 TKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
            K         +++L VHDE+V E  P   E   +++ H M         +PL  E    
Sbjct: 921 DKELKNEGLPANLLLQVHDELVLEVDPTATEQVKALVIHTMEKAVL--LNVPLVVEASVG 978

Query: 671 KRYR 674
           K + 
Sbjct: 979 KNWM 982


>gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
          Length = 930

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 87/512 (16%), Positives = 163/512 (31%), Gaps = 76/512 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           L+  LE+  +  +  N  ++  V+       I +       +L     N +         
Sbjct: 406 LQPLLEDEGIAKIGQNLKYDIGVMARY---GITLRGVAFDTMLESYVLNSVAGRHDMDSL 462

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +     T   +                EY   D  VT ++ + 
Sbjct: 463 SARHLDHKTITFEEIAGKGKGQLTFNQI----------PLEQASEYAAEDADVTLQLHQH 512

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P+   E             L  +   +   G  +D A+    +Q + V    L+Q+  
Sbjct: 513 LWPMLEGESGPSHIFRDIDMPLVPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQQAH 572

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           S   G   +    ++L++ LF +  L +   T     +T + VL    +      QV   
Sbjct: 573 SEA-GEPFNLSSTKQLQSILFEKQQLPVLKKTPGGAPSTNEEVLVELAEQGYALPQV--- 628

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L++   ++         P    P   R H   
Sbjct: 629 ---------------------------ILEYRTLAKLKSTYTDKLPLMVNPLTGRVHTSY 661

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I         +R   IA  G ++V AD + IE R++A ++G
Sbjct: 662 HQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLSG 721

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L+AF  G+D++  T A  F +    V+ DQR   K +   L Y   A     +A  
Sbjct: 722 DKGLLQAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAF---GLARQ 778

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    ++   +    +   G           + +
Sbjct: 779 LNIGRGEAQRYMD--LYFERYPGVLAYMERTRQLASDQGYVETLDGRRL-----YLPEIN 831

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +R         +A       G A    KR  +
Sbjct: 832 ARNGMRRKAAERAAINAPMQGTAADIIKRAMI 863


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 202/634 (31%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVEGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 AERYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASQYAAEDADVTMKLHQV 540

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P            +  E  L  +   I   G  ++       +  ++    +L+Q + 
Sbjct: 541 LAPELDKAPTLVKLFNEIEMPLVEVLSRIERNGVLIEPEKLLAQSAEIEQRLAELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                    +    +  
Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGRGHLVPKLLME 659

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P     +  R H    Q +
Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   I ++G K+V AD + IE R++A +A ++  
Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFITNKGYKIVAADYSQIELRIMAHLANDEGM 753

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F +A  QVT +QR   K +   L Y         +++  G++
Sbjct: 754 IIAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +                                         + + Q++  V 
Sbjct: 811 RADAKKYM-----------------------------------------ERYFQRYPAVQ 829

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++  +            +  V  ++              GR L   ++ ++  
Sbjct: 830 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   KA        +++ VHDE+V
Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +   E  + ++   M         +PL AE
Sbjct: 915 FEVKEERVEHYSQLIKAEMEKAIQ--LKVPLIAE 946


>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 958

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 124/706 (17%), Positives = 219/706 (31%), Gaps = 180/706 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 380 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 429

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 430 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 486

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 487 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 533

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 534 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 593

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           Q+  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 594 QQAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 652

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 653 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 681

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 682 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 741

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 742 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY-- 799

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +    +                                          
Sbjct: 800 -GLAKSLGIDNLSAKTFID----------------------------------------- 817

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 818 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 859

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621
                 G  R+ +N                     Q  + D++   M++ ++        
Sbjct: 860 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSDDLLQ 901

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +++ VHDE+V E P+ + +     L  +M         +PL AE
Sbjct: 902 SKLIMQVHDELVLEVPEAELDLVKEKLPQIMEKVDEGMLNVPLVAE 947


>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
 gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
          Length = 935

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/550 (16%), Positives = 178/550 (32%), Gaps = 74/550 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 414 IKLILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 471

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +            +   EY   D  VT      ++
Sbjct: 472 RYLGHETIAFESLAGKGKSQLTFNQI----------PLQQATEYAAEDADVTMKLQQALW 521

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 522 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 581

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 582 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 639

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 640 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 669

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 670 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 729

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 730 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 786

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +      + +   + F   ++         +   G             +S 
Sbjct: 787 ISRPDAQKYMD--LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRL-----YLPDINSS 839

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +       +        G A    KR  + L  + +   N+ +++     LV+      
Sbjct: 840 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEK 899

Query: 577 RSYLNTTTRQ 586
            ++     +Q
Sbjct: 900 VAFFREQIKQ 909


>gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
          Length = 975

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 124/706 (17%), Positives = 218/706 (30%), Gaps = 179/706 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57
            T+ ID ET + +D         A +  ++  +  F           H     P+ L   
Sbjct: 397 NTIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446

Query: 58  ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSA 108
                 K  L N  +  +  N  +++ V     N  I ++      +LA     + L   
Sbjct: 447 DVLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHG 503

Query: 109 LKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L  + E  L L +   E         C     +            A     EY   D   
Sbjct: 504 LDELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADF 550

Query: 168 TREIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
              +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL
Sbjct: 551 ALRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 610

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQ 272
           +Q+  +       +    ++L+  LF + G+  + L +T      T + VL       P 
Sbjct: 611 EQQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 669

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +  NR  A                               +         P    P+ 
Sbjct: 670 PKIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKD 698

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q +       +++P+   I         VR    A +G  +V AD + IE R
Sbjct: 699 GRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G   
Sbjct: 759 IMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY- 817

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +A + G++  +  + +                                         
Sbjct: 818 --GLAKSLGIDNLSAKNFID---------------------------------------- 835

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
               +  +R   +   + +  EQ    G       RR               L LP  R+
Sbjct: 836 ----RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRN 876

Query: 568 LVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----G 621
                  G  R+ +N                     Q  + D++   M++         G
Sbjct: 877 KNANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIG 918

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 919 SKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 964


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 112/699 (16%), Positives = 200/699 (28%), Gaps = 176/699 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVH--DPVMPQVLKEA 60
           ID ET S        +  +A    ++ F+  + +            H     +P+ +  A
Sbjct: 319 IDTETSS--------LDPHA--AELVGFSLAWFEGDRTRAVYVPLGHREGKQIPRDVALA 368

Query: 61  L-----ENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGE 114
           L     E+     +A N+ F+  +    +   +        TL+ +      +A      
Sbjct: 369 LLGPWLEDGSKAKLAQNAKFDWQI---FWAQGLRPRGLARDTLLESYVLDSTAAHDLDSL 425

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    +     EL               + +            Y   D  V   +  +
Sbjct: 426 AERYLQHRNISYAEL----------TGKGRQARSFAAVDIASATAYAAEDAEVCLRVDAQ 475

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P               E  L  +   +   G  +DV +   L++ +D     ++ E  
Sbjct: 476 MWPQIRRHEGLARVFRDIEMPLVEVLARMEWAGVRIDVDVLKRLSEELDTRMATVESEAF 535

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +   G   +    ++++T LF + GL +         +T + VL+   K           
Sbjct: 536 A-AAGQRFNLNSPKQIQTILFDKMGLPVLKKTPGGQPSTNEDVLAELAKQADLP------ 588

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                    R  L + G ++         P     R  R H   
Sbjct: 589 -------------------------RLILDYRGLAKLKNTYADALPQMIQERTGRVHTHY 623

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       +SDP+   I     +   +R   +A  G  L+ AD + IE R++A ++G
Sbjct: 624 HQAVAATGRLSSSDPNLQNIPVRSDLGRRIRQAFVAEPGHLLISADYSQIELRIMAHLSG 683

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +    +AF  G D++  T A  F +   QVT +QR   K +   L Y         +A  
Sbjct: 684 DAGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTPY---GLAQQ 740

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                                                 K    +  
Sbjct: 741 LGVGQGEA--------------------------------------------KAYMERYF 756

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDV 573
            R   +   +        + G       RR               L LP  RS    R  
Sbjct: 757 ERYPGVREYMENTRRLARQQGYVETLFGRR---------------LYLPEIRSQNPARRN 801

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLT 627
              R+ +N                     Q  + D++   M+              ++L 
Sbjct: 802 YAERAAINAPM------------------QGTAADLIKLAMIAVDAWLLAQTDHGRMLLQ 843

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
           VHDE++ E P+   +    ML   M      A  +PL  
Sbjct: 844 VHDELILEVPEKAVDAACQMLREKMEGVAELA--VPLTV 880


>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
 gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
          Length = 930

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/550 (16%), Positives = 178/550 (32%), Gaps = 74/550 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +            +   EY   D  VT      ++
Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLQQATEYAAEDADVTMKLQQALW 516

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +      + +   + F   ++         +   G             +S 
Sbjct: 782 ISRPDAQKYMD--LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRL-----YLPDINSS 834

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +       +        G A    KR  + L  + +   N+ +++     LV+      
Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEK 894

Query: 577 RSYLNTTTRQ 586
            ++     +Q
Sbjct: 895 VAFFREQIKQ 904


>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
 gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
          Length = 930

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 127/705 (18%), Positives = 222/705 (31%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N DI ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPTLKKIGQNLKYDQHV---FANYDIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           Q+  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QQAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNISAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622
                 G  R+ +N                     Q  + D++   M++         G 
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNWLSDGIGS 874

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 105/640 (16%), Positives = 204/640 (31%), Gaps = 139/640 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
           + L+  LE+     V  N+ F+R V      + +     +   +LA     P  +     
Sbjct: 418 EGLRPILESDVYPKVLQNAKFDRLVF-QFQGIQL--QGVVFDTMLANYVLNPERSHNLTD 474

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            +        +  KEL+              + +     +     EYC  DV  T ++ +
Sbjct: 475 LSRNYLQITAKSYKELVK-------------KGQTIADLSITQVAEYCGLDVFTTYQLRE 521

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +LE                E  L  +   +   G  +D     TL+  ++ +  +L+   
Sbjct: 522 KLEAELAAIPSLHGLFQEVELPLEAVLAVMETSGVRIDQEYLQTLSTQLEADLQRLEAGA 581

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVF 277
             L  G + +    ++L   LF    L ++   +T     T    L   +   P    + 
Sbjct: 582 YELA-GEIFNLGSPKQLSEILFGRLELDVKKSRKTKLGYSTDAATLEKLQGDHPIIDVLL 640

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R  A                               +         P        R H 
Sbjct: 641 EYRTLA-------------------------------KLKSTYVDALPMLVRDDTHRIHT 669

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           + +Q +T      +S+P+   I      S  +R+  I      L+ AD + IE R+LA +
Sbjct: 670 DFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRAAFIPESSWILMAADYSQIELRILAHL 729

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + E   L+A+  G+D++  T      +   Q+  ++R + K++   + Y  G   F   A
Sbjct: 730 SQEPRLLEAYRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMGPHRF---A 784

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+  +     ++     + + +   + + M       A+   ++ T   R +     
Sbjct: 785 REAGVKYSEAKDFIQRFY--DRYPEVFAYLQRM----EREAVSQGYVETILGRRR----- 833

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-R 571
                                                Y + D   L      G++L    
Sbjct: 834 -------------------------------------YFEFDSRGLKKYR--GKALEELA 854

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----DIVLT 627
           +V  +   +++  R L R            +Q  S D++   M+    A       +++ 
Sbjct: 855 EVDLSDIKMSSYDRGLLRAAANAP------IQGSSADLIKIAMVQLQAALEPYKSRLLMQ 908

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E P  +  +  S +   M +       +PL AE
Sbjct: 909 VHDELVLEVPVDEVDDVRSQIKTTMETALP--LSIPLVAE 946


>gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
          Length = 930

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 128/705 (18%), Positives = 219/705 (31%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDSMLASYIIESHLGHGL 459

Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + G  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +                                             K 
Sbjct: 773 -GLAKSLGIDNLSA--------------------------------------------KN 787

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622
                 G  R+ +N                     Q  + D++   M++         G 
Sbjct: 833 NTNARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 874

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919


>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
 gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
          Length = 935

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 100/625 (16%), Positives = 193/625 (30%), Gaps = 151/625 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN D+  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 414 IKPILENPDIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 471

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + +  +     T   +                EY   D  VT      ++
Sbjct: 472 RYLGHETIAFESIAGKGKGQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 521

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 522 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 581

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 582 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 639

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 640 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 669

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 670 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 729

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 730 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 786

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                                           + Q++  
Sbjct: 787 ISRADAQKYMN-----------------------------------------LYFQRYPS 805

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575
           V +   ++ +A  +     + +  R+                 L LP   S    R  G 
Sbjct: 806 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 847

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
            R  +N                     Q  + DI+   M+   +        ++++ VHD
Sbjct: 848 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 889

Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654
           E+V E   +   F    +   M + 
Sbjct: 890 ELVFEVRSEKVAFFREQIKQHMEAA 914


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 206/637 (32%), Gaps = 134/637 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L+  LE+ +   V  N+ F+R + K      I +   +   +LA     P     L  
Sbjct: 45  DSLRTILESKNYPKVFQNTKFDRLIFKHQ---GINLDGVVFDTMLASYVLHPEKSHKLSE 101

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E   L     +  KEL               + +           EYC  D   T  +
Sbjct: 102 LCEQY-LEGITSQNYKEL------------GIGKKQTIADLEIDKVAEYCGMDAYATFLL 148

Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L+            L   EQ L  +   + D G  +D      L++ ++ +   L++
Sbjct: 149 VEPLKNELKQVSSLEKLLLEVEQPLEAVLSIMEDTGILIDTEYLGELSKQLEKDLLILEE 208

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +   +  G   +    ++L   LF +  L+ +   +T                       
Sbjct: 209 KAYEVAGG-KFNLGSPKQLGEILFEKLELNRKKSRKT----------------------- 244

Query: 281 MRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               ++     +  ++ +  D   +   L++   S+         P     +  R H   
Sbjct: 245 ----KTGYSTDHATLDKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDTKTKRIHTNF 300

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q +T      +S+P+   I      S  +R   I  +   LV AD + IE R+LA ++ 
Sbjct: 301 NQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQ 360

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E   L A++  ED++  T    F     ++T  +R +GK +   + Y  G+   Q+ A  
Sbjct: 361 EPVLLNAYQNTEDVHTVTAKLLF--EKEKITSQERNLGKTINFGVIYGMGS---QRFARE 415

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        +  N   + +     +   M+                            
Sbjct: 416 AGVTAAEGKEFI--NKYRQRYAKVFEYLESMK---------------------------- 445

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                         ++ I NG       RR     Y     +NL       R    + + 
Sbjct: 446 --------------KEAIANGYVTTILGRRR----YFNFFDDNLYRF----RGHDPQTID 483

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHD 630
            N+  +N    QL R            +Q  S DI+   M+           +++L VHD
Sbjct: 484 LNQLNINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILNHCQANLLLQVHD 537

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E P  + E   + +   M +       +PL  E
Sbjct: 538 ELVFEIPVKEWEKLENKIKETMENAVK--LTIPLVVE 572


>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
 gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
          Length = 928

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 121/695 (17%), Positives = 213/695 (30%), Gaps = 172/695 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID     +   A +  ++  +  F           H     P+ L         K  LEN
Sbjct: 353 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGRLKPHLEN 410

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119
             +  +  N  +++ V     N  I ++      +LA     + L   L  + E  L L 
Sbjct: 411 PALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGLDELSERWLGLE 467

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171
           +   E         C     +            A     EY   D      +        
Sbjct: 468 TITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFALRLDAHLRAQM 514

Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             K+LE     E  +  +   +   G  +D A     +  +  E  KL+QE  +   G  
Sbjct: 515 DAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 573

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    ++L+  LF + G+  + L +T      T + VL       P    +  NR  A 
Sbjct: 574 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA- 632

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P    P+  R H    Q + 
Sbjct: 633 ------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQAVA 662

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +++P+   I         VR    A +G  +V AD + IE R++A ++G++  +
Sbjct: 663 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 722

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G      +A + G++ 
Sbjct: 723 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 779

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            +    +                                             +  +R   
Sbjct: 780 LSAKTFID--------------------------------------------RYFARYPG 795

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578
           +   + +  EQ    G       RR               L LP  R+       G  R+
Sbjct: 796 VAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNKNANARAGAERA 840

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
            +N                     Q  + D++   M++ ++          +++ VHDE+
Sbjct: 841 AINAPM------------------QGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDEL 882

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E P+ + +     L  +M         +PL AE
Sbjct: 883 VLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 917


>gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 95/512 (18%), Positives = 171/512 (33%), Gaps = 77/512 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  F+R VLK     DI +       +L     N +         
Sbjct: 405 LKPLLEDPQAQKVGQNLKFDRGVLKRY---DIELQGIRFDTMLESYALNSVAGRHDMDTL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +  + K    +E+  +     T   +          A      Y   D  VT ++  +
Sbjct: 462 ASRWLNHKTVTFEEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHVK 511

Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   KEQ            L  +   I   G  +   +  T +Q +     +L+ +  
Sbjct: 512 MWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAPGILATHSQELGSRLAELELKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L+T LF + G+     T     +T + VL+      P    +  +
Sbjct: 572 ELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEH 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P    P   R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPHSGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I         +R   IA +G ++V AD + IE R++A ++ 
Sbjct: 660 HQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQ 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF + +D++  T A  F V+  +V+ +QR   K +   L Y   A     ++  
Sbjct: 720 DKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAF---GLSRQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +        +E      ++M E+  E A +  ++ T  +  +       
Sbjct: 777 LNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAQKGYVST-LDGRRLYLPDIK 829

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +  +       +A       G A    KR  +
Sbjct: 830 ASNAMRRKAAERAAINAPMQGTAADIIKRAMI 861


>gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
 gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
 gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
 gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
          Length = 929

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 128/705 (18%), Positives = 220/705 (31%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQV----- 56
           T+ ID ET + +D         A +  ++  +  F           H     P+      
Sbjct: 352 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQIDLQD 401

Query: 57  ----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
               LK  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 458

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 459 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 505

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 506 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELSRQSAELGAELMKLE 565

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  ++  G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 566 QEAYAVA-GQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 624

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 625 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 653

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 654 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 713

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 714 MAHLSGDKTLITAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 771

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +    +                                          
Sbjct: 772 -GLAKSLGIDNISAKTFID----------------------------------------- 789

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 790 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 831

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622
                 G  R+ +N                     Q  + D++   M++         G 
Sbjct: 832 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 873

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 874 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 918


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 105/603 (17%), Positives = 189/603 (31%), Gaps = 99/603 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + ID ET S           Y  D  ++  +F  +          HD           
Sbjct: 342 KLIAIDTETTSLN---------YM-DAKLVGISFAIEAGEAAYLPLAHDYLDAPSQIDMA 391

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSAL 109
              + L+  LE+ +   V  N  ++   +    N+ I +       +L     N + S  
Sbjct: 392 TALEKLRPLLESDNPAKVGQNLKYD---ISIFANVGIKLKGVHFDTMLESYVFNSVASRH 448

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
              G ALK    K    +++  +  K  T   +                 Y   D  +T 
Sbjct: 449 DMDGLALKYLGHKNISFEDVAGKGAKQLTFNQI----------DLDTAAPYAAEDADITL 498

Query: 170 EIFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L P   KE EL  +              I  +G  +D  L    +  +  +  KL
Sbjct: 499 RLHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLIDPMLLSQQSDELAQKIDKL 558

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274
           + E   +  G   +    ++L+   F +    +   T      T + VL       P   
Sbjct: 559 ELEAYEIA-GEKFNLGSPKQLQVLFFEKLAYPIIKKTPKGAPSTAEEVLVELALDYPLPK 617

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R  A                               +         P        R
Sbjct: 618 IILAHRSLA-------------------------------KLKSTYTDKLPLMVNGTTGR 646

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q         +SDP+   I         +R   IA  G+K++ AD + IE R++
Sbjct: 647 VHTSYHQANAATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIM 706

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ ++  L AF  G+D++  T A  F     +VT +QR   K +   L Y   A    
Sbjct: 707 AHLSQDKGLLTAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMSAF--- 763

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A    +  N     + T      +       ++M+E     A E  ++ T   R +  
Sbjct: 764 GLAKQLDIPRNEAQTYIDT-----YFARYPGVLQYMEETRA-SAAELGYVSTLFGR-RLY 816

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             +   R +       +A       G A  II +   ++      + +  + +++     
Sbjct: 817 LPEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIANWIKTETQGEITMIMQVHDE 876

Query: 568 LVY 570
           LV+
Sbjct: 877 LVF 879


>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
 gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
          Length = 975

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 126/705 (17%), Positives = 214/705 (30%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 398 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 448 VLGHLKPYLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 504

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 505 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 551

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 552 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 611

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           Q+  +       +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 612 QQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 671 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 700 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 760 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGL 819

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            K      L+                                                K 
Sbjct: 820 AKSLGIDNLSA-----------------------------------------------KN 832

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 833 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 877

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622
                 G  R+ +N                     Q  + D++   M++         G 
Sbjct: 878 NTNARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 919

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 920 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVGGGLLDVPLVAE 964


>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
 gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
          Length = 1024

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 117/641 (18%), Positives = 196/641 (30%), Gaps = 142/641 (22%)

Query: 51   PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSAL 109
              +   LK  LE+  V  V  N  ++  VL       I +  +  T++++        + 
Sbjct: 492  EAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH---GIEVRPYDDTMLISYVLDAGKGSH 548

Query: 110  KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                 A +    +     ++                     R        Y   D  VT 
Sbjct: 549  GMDELARRHLGHQPITFADV----------TGTGRTKVTFDRVPLDKATAYAAEDADVTL 598

Query: 170  EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +++ ++P  + E+           L  +   +   G  VD  +   L+        +L+
Sbjct: 599  RLWRLMKPRLAAERRATVYETLERPLVPVLARMESCGIRVDRGMLSRLSGDFSQSLARLE 658

Query: 220  QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274
             E++ +  G   S    +++   LF + GL     T +    T   +L            
Sbjct: 659  AEIQEMA-GESFSVSSPKQIGDILFGKFGLPGAKKTPSGQWATPATLLEELAGQGHALPK 717

Query: 275  QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            ++   R                                 S+                 +R
Sbjct: 718  KILEWRQL-------------------------------SKLKSTYTDTLQEHADRETNR 746

Query: 335  SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
             H       T      +SDP+   I         +R   +A EG KL+ AD + IE R+L
Sbjct: 747  VHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADEGHKLISADYSQIELRLL 806

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A +A      +AF  G D++  T +  F V   Q+T D R   K +   + Y   A    
Sbjct: 807  AHIADIPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINFGIIYGISAF--- 863

Query: 450  KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             +A   G+     A                 F +   E  P        I    + +KK 
Sbjct: 864  GLADRLGIPQGEAAA----------------FIKQYFERFP-------GIRAYIDDIKKT 900

Query: 510  WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
             R K   V+ L+  +                         Y +   NN     P  R+ V
Sbjct: 901  CRDK-GYVTTLFGRVCH-----------------------YPQIRSNN-----PQERASV 931

Query: 570  YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   R  +N   +         G   + I +A+ R    EG + A      ++L VH
Sbjct: 932  ------ERQAINAPIQ---------GSAADIIRRAMVR---MEGALAAAGLTTRMLLQVH 973

Query: 630  DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            DE+V E PD + E    ++  +M   P  A  L  PL  E 
Sbjct: 974  DELVFEAPDDEVERALPIIARVMEEAPHPAVQLRVPLAVEA 1014


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/625 (16%), Positives = 193/625 (30%), Gaps = 151/625 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 222 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 279

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 280 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 329

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 330 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAYAL 389

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 390 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 447

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 448 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 477

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 478 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 537

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 538 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 594

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                                           + Q++  
Sbjct: 595 ISRPDAQKYMD-----------------------------------------LYFQRYPS 613

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575
           V +   ++ +A  +     + +  R+                 L LP   S    R  G 
Sbjct: 614 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 655

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
            R  +N                     Q  + DI+   M+   +        ++++ VHD
Sbjct: 656 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 697

Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654
           E+V E   +   F    +   M + 
Sbjct: 698 ELVFEVRSEKVAFFREQIKQHMEAA 722


>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
 gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
          Length = 924

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/539 (16%), Positives = 166/539 (30%), Gaps = 78/539 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
             L+  L++     +  +  ++  VL+      + +  +    +L     N   +     
Sbjct: 399 DALRPVLQDPAKKKLGQHGKYDLHVLRRH---GVDVQGYHDDTMLESFVLNSTATRHDMD 455

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+       + +++  +  K            P  +        Y   D  +T  + 
Sbjct: 456 SLALRYLGYSTIKFEDVAGKGAKQ----------IPFSQVGIDEASRYAAEDADITLRLH 505

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L+P               E  L  +  TI   G  +D       +Q +        Q+
Sbjct: 506 RALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANGVRIDTDELRRQSQDLSSRMLAAQQK 565

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVF 277
              L  G   +    ++L+  LF E  L           +T +  L +  +         
Sbjct: 566 ATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIAEQHELP---- 620

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                      R  L++ G ++         P    P   R H 
Sbjct: 621 ---------------------------RVILEYRGLAKLRSTYTDKLPEMVNPETGRVHT 653

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q         +SDP+   I         +R   +A EG +L+ AD + IE R++A +
Sbjct: 654 SYHQSGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPEGCQLLAADYSQIELRIMAHL 713

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   ++AFE G D++  T A  F     +VT ++R   K +   L Y   A     +A
Sbjct: 714 SEDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAF---GLA 770

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++       V        +    +F   M++   +    +   G            
Sbjct: 771 RNLGIDRGQAQDYV--ALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRL-----YLND 823

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVY 570
            H+R   L     +A       G A    KR  V +    +D      ++L     LV+
Sbjct: 824 IHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVF 882


>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
 gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
          Length = 928

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 153/471 (32%), Gaps = 72/471 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+     V  N  ++R VL+   N  I +       +L     N +       
Sbjct: 403 ELLKPLLEDEKARKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 460 SLSERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   +           E  L  +   +   G  +D A+ H  ++ + +   +L+++
Sbjct: 510 LKMWPELQQYKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L+T LF + G+     T     +T + VL       P    + 
Sbjct: 570 AHEIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +T      ++DP+   I         +R   IA +   +  AD + IE R++A +
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPQDYVIASADYSQIELRIMAHL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLESVTAEQRRSAKAINFGLIYGMSAF---GLA 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
               +        +      E +     +    +    E    +   G   
Sbjct: 775 RQLNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKERGYVETLEGRRL 823



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
           Q  + DI+   M+   K   D      +++ VHDE+V E    D +  +  ++ LM 
Sbjct: 849 QGTAADIIKRAMIAVDKWLQDEQPRVRMIMQVHDELVFEVHKDDLDVVSKKIHQLME 905


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/505 (18%), Positives = 156/505 (30%), Gaps = 77/505 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           + LK  LE+     V  N  ++ +VL       I +       +L     + + S     
Sbjct: 401 EKLKPYLEDPAFPKVGQNLKYDMSVLAQH---GISLRGITFDTMLESYVLDSVASRHDMD 457

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL    ++  +  ++  +     T   +          A    G Y   D  +T  + 
Sbjct: 458 SLALNYLGEETIKFADVAGKGAAQLTFNQV----------ALDQAGPYAAEDADITLRLH 507

Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E  L  +   I   G  VD  L    +Q +     +L+ E
Sbjct: 508 QTLWPRVAAEPTLTKVFEEIELPLVPVLSRIERTGALVDDTLLFQQSQELSARLGELETE 567

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              L  G   +    ++L   LF +  + +   T      T + VL       P    + 
Sbjct: 568 AWELA-GQQFNLASPKQLGEILFEKLQIPVLKKTAKGAPSTKEEVLQELALDYPLPKVLL 626

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R                               G ++         P        R H 
Sbjct: 627 EHR-------------------------------GLAKLKSTYTDKLPTMINSVTGRIHT 655

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q  T      +SDP+   I         VR   +A+ G KLV AD + IE R++A +
Sbjct: 656 SYHQSGTATGRLSSSDPNLQNIPIRSAEGRRVRQAFVAAPGCKLVAADYSQIELRIMAHL 715

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   L AF  G+D++  T A  F V   +VT DQR   K +   L Y   A     +A
Sbjct: 716 SEDPSLLAAFSAGQDIHRATAAEVFGVENEEVTIDQRRSAKAINFGLIYGMSAF---GLA 772

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+N    A  ++               +    N    A E  F+ T   R +    +
Sbjct: 773 RQLGINRKQAAEYIELYFTRYP------GVQNYMNNIRHSAAEQGFVETVFGR-RLYLPE 825

Query: 513 KHSRVSELWNELHQAFEQTIENGKA 537
            ++          +        G A
Sbjct: 826 INASNGMRRQAAERTAINAPMQGTA 850



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 20/110 (18%)

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619
           GR L   ++          +  + R+           +Q  + DI+   M+N        
Sbjct: 818 GRRLYLPEI--------NASNGMRRQAAER-TAINAPMQGTAADIIKLAMINVHNWLETS 868

Query: 620 -AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL-PLKAE 666
                I++ VHDE+V E P+++ E     L  LM S    A+ L PL  +
Sbjct: 869 DLTSKIIMQVHDELVLEVPESEMEEVQKGLNDLMESA---AELLVPLVVD 915


>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
 gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
          Length = 930

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/625 (16%), Positives = 193/625 (30%), Gaps = 151/625 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAYAL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQ 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                                           + Q++  
Sbjct: 782 ISRLDAQKYMD-----------------------------------------LYFQRYPS 800

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575
           V +   ++ +A  +     + +  R+                 L LP   S    R  G 
Sbjct: 801 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
            R  +N                     Q  + DI+   M+   +        ++++ VHD
Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 884

Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654
           E+V E   +   F    +   M + 
Sbjct: 885 ELVFEVRSEKVAFFREQIKQHMEAA 909


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/699 (16%), Positives = 210/699 (30%), Gaps = 168/699 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---------VHDPVMPQVL------- 57
           +D    G+     D  ++ F+     +                  + ++P  +       
Sbjct: 396 VDTETTGLDPMQAD--IVGFSLATAPNEACYVPLSHKGGDEGLFSEGLLPDQIPIPDAVA 453

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAV 112
             K  +E+  V  +  N  ++  +LK    +++  +    T++++        P  +  +
Sbjct: 454 AIKPLMEHPGVLKIGQNLKYDWLILKR-LGIELGPYD--DTMLVSYVLDAGASPHGMDPL 510

Query: 113 GEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
               L  +  K EE        C     +  +DR       A     +Y   D  VT  +
Sbjct: 511 SMRWLGHTPIKFEEV-------CGKGKGQICFDRA------AIDKATDYAAEDADVTLRL 557

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++ L+P  + E          + L  +   + +RG  +D  +   L+        +L+ E
Sbjct: 558 WRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGITIDRQMLSRLSGEFAQGMGRLEAE 617

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQV 276
           +  +  G   +    ++L   LF +  +     T T    T   VL    +       ++
Sbjct: 618 ISEMA-GETFNPGSPKQLGDILFGKMQIPGGRKTPTGAWSTGADVLEELAEQGHELPRRI 676

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + R                                  +         P        R H
Sbjct: 677 LDWRQL-------------------------------QKLKSTYTDALPTYVNKETGRVH 705

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                  T      +S+P+   I         +R   IA+ G KLV AD + IE R+LA 
Sbjct: 706 TSFALAATTTGRLSSSEPNLQNIPVRTEEGRKIRKAFIAAPGHKLVSADYSQIELRLLAE 765

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A      +AF+ G D++  T +  F V    +  + R   K +   + Y   A     +
Sbjct: 766 IADTPSLRQAFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF---GL 822

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A+   +        +K     E +     +    +    EH   +   G           
Sbjct: 823 ANQLSIPREEAGAYIK--RYFERFPGIRAYMDETRNFAREHGYVETLFG----------- 869

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                         +R   P +  K          PS R+   R
Sbjct: 870 ------------------------------RRCHYPDISAKN---------PSIRAFNER 890

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
              N R                 G   + I +A++R    +  +        ++L VHDE
Sbjct: 891 AAINARL---------------QGSAADIIRRAMAR---MDAALEKAGLSARMLLQVHDE 932

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           ++ E PD +      ++   M   P  A  L  PLK + 
Sbjct: 933 LIFEVPDDEIAATIPVVRETMELAPFPAVALKVPLKVDA 971


>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 930

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/625 (15%), Positives = 193/625 (30%), Gaps = 151/625 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G  +V AD + IE R++A ++G+Q
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHLSGDQ 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                                           + Q++  
Sbjct: 782 ISRADAQKYMN-----------------------------------------LYFQRYPS 800

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575
           V +   ++ +A  +     + +  R+                 L LP   S    R  G 
Sbjct: 801 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
            R  +N                     Q  + DI+   M+   +        ++++ VHD
Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 884

Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654
           E+V E   +   F    +   M + 
Sbjct: 885 ELVFEVRSEKVAFFREQIKQHMEAA 909


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 127/686 (18%), Positives = 215/686 (31%), Gaps = 142/686 (20%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVLKEALENTDVT 67
           D    G+     D+  I   +G D   +      H          + Q LK  LE     
Sbjct: 385 DTETTGLDPREVDLVGIGCCWGRDPGNIAYIPIAHHNGNQLEKTQIFQALKPILETEKYP 444

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
            V  N+ F+R +        I +   +   +LA     P           L+   +    
Sbjct: 445 KVFQNAKFDRAIFAHQ---GISLAGVVFDTMLASYVLHPE------MKHNLTDLSLRYLG 495

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----------EP 177
            +IA+       +    + +        +  EYC  DV  T  + ++L          E 
Sbjct: 496 NIIAK----SYKDLGLTKKQTIADLEISVAAEYCGLDVYTTYLVCQKLKVELKDYPDLEK 551

Query: 178 LSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           L  K E  L  +   + + G  +D      L + +  + T L+ +  +       +    
Sbjct: 552 LLEKVETPLEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKAYNAAD-ERFNLNSP 610

Query: 237 EKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++L   LF + GL            +T   VL   +   P    +   R  A        
Sbjct: 611 KQLGEILFEKLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYILEYRTLA-------- 662

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                                  +         P    P+  R H + +Q +T      +
Sbjct: 663 -----------------------KLKSTYIDALPTLVSPKTDRIHTDFNQTLTSTGRLSS 699

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           S+P+   I      S  +R   I  E   LV AD + IE R+L  ++ E   L+A++ GE
Sbjct: 700 SNPNLQNIPVRTEFSQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPILLQAYQAGE 759

Query: 407 DLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           D++  T    F+   P  VT  +R IGK++   + Y  GA   Q+ A   G++       
Sbjct: 760 DVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGMGA---QRFAREAGVSKEEGRAF 816

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +        + +         E   + AI   ++ T  +R     R+    +S    EL 
Sbjct: 817 ID------RYHERYAKVFEYLELVKKQAIAQGYVSTILQR-----RRNFDFISNCLIELK 865

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
            +  + I+                                 SL Y               
Sbjct: 866 GSDPKAID-------------------------------LDSLDYA----------YNDA 884

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD- 640
           QL R            +Q  S DI+   M+   +        ++L VHDE+V E P  + 
Sbjct: 885 QLLRAAANAP------IQGSSADIIKVAMIQIHELLKDYQARLLLQVHDELVFEMPPEEW 938

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E   S +   M         +PL  +
Sbjct: 939 EELGSKIKTTMEQAVP--LSIPLVVD 962


>gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
 gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
          Length = 1000

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 114/632 (18%), Positives = 202/632 (31%), Gaps = 136/632 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113
           LK  LE+     V HN  +++ VL     +D+      CT+ ++ +         +  + 
Sbjct: 474 LKGVLEDKGTLKVGHNVKYDQLVLARH-GIDVAPFD--CTMCMSYALDAGKNGHGMDELS 530

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L L  Q +    E+  +     T + +          A      Y   D  VT  +++
Sbjct: 531 -VLHLGHQPI-AFSEVTGKGKGKVTFDKV----------ALEPATHYAAEDADVTLRLWQ 578

Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P  + E          + L  +   +  RG  +D A+   L+        +++ E+ 
Sbjct: 579 VLKPRLAAEGRTTVYETLERPLIAVLARMESRGISIDKAMLARLSSEFAQGAARIEDEIA 638

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            L  G   +    +++   LF + GL     T T      ++  +   +A      +   
Sbjct: 639 ELA-GERLNVGSPKQMGDILFGKMGLPGGTKTATGMWSTKATALEELAEAGHKLPQK--- 694

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                   L++   S+         P    P+  R H       
Sbjct: 695 -----------------------ILEWRQLSKLRSTYTDALPNFVNPQTRRVHTSYALAA 731

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   +A EG  LV AD + IE R+LA +A     
Sbjct: 732 TTTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAEEGNLLVSADYSQIELRLLAEIAEIPAL 791

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             AF  G D++  T +  FNV    +  + R   K +   + Y   A     +A+  G+ 
Sbjct: 792 RTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINFGIIYGISAF---GLANQLGIP 848

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +K       + +     R   E       E  ++ T   R     R  +  + 
Sbjct: 849 REEAGQYIK------RYFERFPGIRDYMEETKTFCREHGYVETLFGR-----RCHYPEI- 896

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                   A +                                 PS R+   R   N R 
Sbjct: 897 --------AAKN--------------------------------PSIRAFNERAAINARL 916

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                           G   + I +A+ R    E  +   K    ++L VHDE+V E P+
Sbjct: 917 ---------------QGTAADIIRRAMIR---MEPALEKAKLSARMLLQVHDELVFEVPE 958

Query: 639 TD-EFNASMLYHLMTS--NPSWAKGLPLKAEG 667
            + +    ++   M +   P+ A  +PLK + 
Sbjct: 959 GEADATIPVVRQCMETASAPAVALAVPLKVDA 990


>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
 gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
          Length = 930

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/625 (16%), Positives = 192/625 (30%), Gaps = 151/625 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN +   +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPNSHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 725 GLISAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                                           + Q++  
Sbjct: 782 ISRADAQKYMN-----------------------------------------LYFQRYPS 800

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575
           V +   ++ +A  +     + +  R+                 L LP   S    R  G 
Sbjct: 801 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
            R  +N                     Q  + DI+   M+   +        ++++ VHD
Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 884

Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654
           E+V E   +   F    +   M + 
Sbjct: 885 ELVFEVRSEKVAFFREQIKQHMEAA 909


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/694 (17%), Positives = 221/694 (31%), Gaps = 169/694 (24%)

Query: 4   LFIDFETRSP---IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKE 59
           L+ID  T +    ID     +  Y E   ++  +F  +          HD    P+ L +
Sbjct: 329 LWIDKLTNADLIAIDTETTSLN-YME-AKLVGISFAIEAGKAAYLPLGHDYLDAPKQLDQ 386

Query: 60  A---------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSA 108
           A         LEN ++  V  N  ++   +    N+ I +       +L     N + + 
Sbjct: 387 AEALAKLKPLLENPELKKVGQNLKYD---ISIFANVGIKLQGIAFDTMLESYVFNSVATK 443

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 ALK    K    +E+  +  K  T   +             +   Y   D  +T
Sbjct: 444 HNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQI----------DLEIAAPYAAEDADIT 493

Query: 169 REIFKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P   KE +L             +   I   G  +D  +    ++ +     +
Sbjct: 494 LRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQSEELARTIDE 553

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273
           L+Q+   +  G   +    ++L+   F + G  +   T      T + VL       P  
Sbjct: 554 LEQKAFEIA-GEKFNLSSPKQLQALFFEKLGYPIIKKTPKGAPSTAEDVLVELALDYPLP 612

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R  A                               +         P     +  
Sbjct: 613 KIILQHRSLA-------------------------------KLKSTYTDKLPLMVNAQSG 641

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q         +S+P+   I         +R   IA EGKK++ AD + IE R+
Sbjct: 642 RIHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAREGKKVLAADYSQIELRI 701

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  L AF  G+D++  T A  F+V   +VT +QR   K +   L Y   A   
Sbjct: 702 MAHLSQDKGLLTAFAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMSAF-- 759

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A    ++                  +A+ +     + +P               V K
Sbjct: 760 -GLAKQLDISR----------------PEAQKYIDTYFKRYP--------------GVLK 788

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +  ++L                + +  +R  +P +   KD+N +          
Sbjct: 789 YMEETRAEAADLGY-------------VSTLYGRRLYLPAI---KDRNAMRRQ------- 825

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAG 621
                   R+ +N                     Q  + DI+ + M+N        T+  
Sbjct: 826 -----AAERAAINAPM------------------QGTAADIIKKAMINIAHWIATETRGE 862

Query: 622 YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
            ++++ VHDE+V E   D  E     +  LM   
Sbjct: 863 IEMIMQVHDELVFEVDSDKAEEMREKVCQLMADA 896


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/605 (17%), Positives = 188/605 (31%), Gaps = 90/605 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64
           DL    +  Y E   ++      D          H     P+ L  A          E+ 
Sbjct: 355 DLETTSLN-YME-ADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRASVLAALKPLWEDP 412

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               +  N  ++ +VL      DI +   +   +LA    N   +       ALK   +K
Sbjct: 413 AKAKIGQNLKYDISVLARY---DIEVAGRLEDTMLASYVLNATATRHDMDSLALKYLGEK 469

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
               +E+  +  K  T + +          A      Y   DV +T  + + L P     
Sbjct: 470 TISFEEIAGKGAKQLTFDQI----------ALEQAAPYACEDVDITLRLHRELRPRVDGE 519

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                 L   E  L  +   +   G  +D    H  ++ ++    +L+     L  G   
Sbjct: 520 GRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSRELEKRLRELETRAYELA-GREF 578

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L   LF E  + +   T      T + VL       P    +  +R       
Sbjct: 579 NLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVIIEHR------- 631

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P        R H    Q +T   
Sbjct: 632 ------------------------GFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATG 667

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   +A  G ++V AD + IE R++A ++G++  L AF
Sbjct: 668 RLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAF 727

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A  F VA   V+ +QR   K +   L Y   A     +     +  N  
Sbjct: 728 AEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSA---WGLGRQLHIERNQA 784

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +        ++      R+M E     A +D ++ T   R +    + +++      
Sbjct: 785 QTYID-----RYFDRYPGVARFM-ERIRAQAADDGYVETVFGR-RLYLPEINAQNRTRRQ 837

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLN 581
              +        G A    K   + +    ++ +    +++     LV+           
Sbjct: 838 AAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEAQVDAFT 897

Query: 582 TTTRQ 586
              RQ
Sbjct: 898 DAVRQ 902


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/550 (15%), Positives = 178/550 (32%), Gaps = 74/550 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 414 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 471

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + +  +     T   +                EY   D  VT      ++
Sbjct: 472 RYLGHETIAFESIAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 521

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 522 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQAYAL 581

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 582 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 639

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 640 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 669

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 670 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 729

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  ++T +QR   K +   L Y   A     ++   G
Sbjct: 730 GLINAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIYGMSAF---GLSRQLG 786

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +      + +   + F   ++E        +   G             +S 
Sbjct: 787 ISRADAQKYMD--LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRL-----YLPDINSS 839

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +       +        G A    KR  + L  + +   ++ +++     LV+      
Sbjct: 840 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPDIEMIMQVHDELVFEVRSEK 899

Query: 577 RSYLNTTTRQ 586
            ++     +Q
Sbjct: 900 VAFFREQIKQ 909


>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
 gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
          Length = 920

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/640 (17%), Positives = 200/640 (31%), Gaps = 155/640 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            LK  LE++    V  N  ++R VL    N  I ++      +L     N   +      
Sbjct: 396 QLKPLLEDSSRAKVGQNLKYDRNVLA---NHGIELNGIQFDTMLESYVLNSTATRHDMDS 452

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A K       + +++  +  K  T   +            +  G Y   D  +T ++ +
Sbjct: 453 LARKYLDVGTIKFEDIAGKGAKQLTFNQI----------QLQQAGPYAAEDADITLQLHE 502

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P  +            E  L  +   I   G  V   L +  +  +     +L++E 
Sbjct: 503 VLWPKLAAIDSLMSVFQTIELSLVPVLSRIERNGALVSRDLLNKQSAELGTRLQQLEKEA 562

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L   LF +  L +   T      T + VL+      P       
Sbjct: 563 HELA-GEAFNLSSPKQLGHILFDKLELPVIKKTPKGAASTAEEVLAELALDYPLP----- 616

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                     R  +++ G S+         P        R H  
Sbjct: 617 --------------------------RILMEYRGLSKLKSTYTDKLPQMISEVTGRIHTS 650

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      +SDP+   I         VR   +A +G K+V AD + IE R++A ++
Sbjct: 651 YHQAVTATGRLSSSDPNLQNIPIRTEEGRKVRQAFVARDGYKIVAADYSQIELRIMAHLS 710

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   LKAF  G+D++  T A  F +   QV+ +QR   K +   L Y   A    K   
Sbjct: 711 QDNGLLKAFAEGKDIHQATAAEVFGLELEQVSTEQRRRAKAINFGLIYGMSAFGLAKQ-- 768

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                  +A+ +       +P   + D    T  +         
Sbjct: 769 -----------------IDVGRHEAQEYIDTYFSRYP--GVRDYMDNTRAD--------- 800

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                                     A +R  V  +Y              GR L   ++
Sbjct: 801 --------------------------AAERGYVETLY--------------GRRLYLPEI 820

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
                     +  + R+           +Q  + DI+ + M++  +          +++ 
Sbjct: 821 --------NASNGMRRQAAER-TAINAPMQGTAADIIKKAMVDVDRWLLESDVDGQMIMQ 871

Query: 628 VHDEIVCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  + + ++  S +  LM+        +PL  +
Sbjct: 872 VHDELVFEVAEPSLDYLVSSVNDLMSGAVV--LDVPLIVD 909


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/638 (17%), Positives = 204/638 (31%), Gaps = 147/638 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +++      N+ ++R +L       I +   +   +LA                 L  
Sbjct: 453 LASSNHPKTLQNAKYDRLIL---LRHGIALEGVVIDTLLADY---------------LRD 494

Query: 121 QKMEEGKELI--ARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----- 172
              + G EL+    F  +  +   L  + +            YC  DV VTR +      
Sbjct: 495 ASAKHGLELMAEREFGFQPTSFTDLVGKKQTFADVPLEPASLYCGMDVHVTRRLALLLRH 554

Query: 173 -------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                  + L  L   EQ L  +   +   G  +DV     L++ +     +L+ + ++ 
Sbjct: 555 QLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTLQQLESDAKA- 613

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQAIQVFNNR 280
             G+  +    ++L   LF   GL  +    T+T   T   VL       P    V ++R
Sbjct: 614 AAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLGNDHPVVPLVLDHR 673

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
           +                                S+         P        R H + +
Sbjct: 674 VL-------------------------------SKLKSTYIDALPQLVEAETGRVHTDFN 702

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +S+P+   I      S  +R   +  EG  L+ AD + IE R+L  ++GE
Sbjct: 703 QAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIELRILTHLSGE 762

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   +A+  G+D++  T      +   +V+ D+R +GK +   + Y  GA   Q+ A  T
Sbjct: 763 KVLQEAYRGGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGA---QRFARET 817

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++ +     +      + +     F     E     A+   ++ T   R +        
Sbjct: 818 GVSQSEAKEFL--VKYKQRYPKVFAFL----ELQERLALSRGYVETILGRRRP------- 864

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                                 D+N L  +L         ++  
Sbjct: 865 -----------------------------------FHFDRNGLGRLLGKD----PLEIDL 885

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629
           + +       Q  R            +Q  S DI+   M+    A         ++L VH
Sbjct: 886 DVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALLRQGLPAQLLLQVH 939

Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E  PD  E    ++   M         +PL  E
Sbjct: 940 DELVLEVAPDALETTRDLVVRTMEQAFE--LSVPLVVE 975


>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
 gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
          Length = 918

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/646 (18%), Positives = 205/646 (31%), Gaps = 114/646 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + ID ET S           Y E   ++  +F  +          HD             
Sbjct: 341 IAIDTETTSLN---------YME-AELVGLSFATEAGKAAYLPLAHDYLDAPLQIDKASA 390

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
            + L+  LE      V  N  ++ ++L    N  I +       +L     N + S    
Sbjct: 391 LEKLRPILEGDTPQKVGQNLKYDMSILA---NAGISLKGIRFDTMLESYVFNSIASRHDM 447

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            G ALK    K    +E+  +  K  T   +             + G Y   D  +T  +
Sbjct: 448 DGLALKYLGHKNISFEEVAGKGAKQLTFNQV----------HLDIAGPYAAEDADITLRL 497

Query: 172 FKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P   KE EL             +   +  +G  +D  L    +  +  +   L+ 
Sbjct: 498 HQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQQSGELAKKLDDLEN 557

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T  F + G  ++  T      T + VL       P    +
Sbjct: 558 KAYEIA-EEKFNLASPKQLQTLFFEKLGYPIKKKTPKGAPSTAEDVLIELALDYPLPKVI 616

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R  A                               +         P        R H
Sbjct: 617 LEHRSLA-------------------------------KLKSTYTDKLPLMVNATTGRVH 645

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q         +S+P+   I         +R   IA  G+K++ AD + IE R++A 
Sbjct: 646 TSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAH 705

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +   L AF  G+D++  T A  F V   +VT +QR   K +   L Y   A     +
Sbjct: 706 LSQDAGLLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAF---GL 762

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A    +  N     + T      +       ++M+E     A E  ++ T   R +    
Sbjct: 763 AKQLDIPRNEAQKYIDT-----YFARYPGVLKYMEETRA-IAAELGYVSTLFGR-RLYLP 815

Query: 512 QKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + + R +       +A       G A  II +    +     +  +  + L++     LV
Sbjct: 816 EINDRNAMRRQAAERAAINAPMQGTAADIIKKAMIAIHQWINQDTQGEITLIMQVHDELV 875

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI--LAEG 613
           +               Q     T   K+ + + QA S D+  LAE 
Sbjct: 876 F----------EVDEAQAETLKT---KVCDLMAQAASLDVTLLAEA 908


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 119/692 (17%), Positives = 219/692 (31%), Gaps = 149/692 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMPQV-----LKE 59
           D ET S   +    +             +G     V            +PQ      L+ 
Sbjct: 381 DTETTSLDPIEATLVGI--------GCCWGHQSTDVAYIPLNHTEGEQLPQTEVLAALRS 432

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEAL 116
            LE+        N+ F+R VL    +  I +   +   +LA     P     L  +    
Sbjct: 433 ILESDQYPKAFQNTKFDRIVL---LHQGIQLAGVVFDTMLASYVLRPEDSHKLSDLCHRY 489

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL- 175
            L + K    K+L               + +            YC  D   T ++  +L 
Sbjct: 490 -LENIKSLNYKDL------------EIPKTQTIANLDISRVAHYCGMDAYATFKLVPKLL 536

Query: 176 ----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       L   EQ L  +   + + G  +D       +Q ++ +    +++    
Sbjct: 537 AELEKAPDLYNLLIKVEQPLEPVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYE- 595

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF +  L      +                            +
Sbjct: 596 AAGESFNLGSPKQLSYILFDKLKLSKSKSRKI---------------------------K 628

Query: 286 SAVLKLNTLVEAMNSDGRLR-GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     +  +E +  + R+    L+    ++         P    P+  R H + +Q +T
Sbjct: 629 TGYSTDHATLEKLQGEDRIIDYILEHRTLAKLKSTYVDALPALVHPKTGRVHTDFNQTVT 688

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S+P+   I      S  +R   I  EG  LV AD + IE R+LA +  E   +
Sbjct: 689 TTGRLSSSNPNLQNIPIKTEFSRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLLV 748

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A++  +D++  T    F+   A +T ++R+IGK +   + Y  GA   Q+ A   GL++
Sbjct: 749 EAYQNYQDVHRVTAQLLFDK--ANITSEERSIGKTINFGVIYGMGA---QRFARAFGLSV 803

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 +      E++           E   + AI   F+ T   R          R  E
Sbjct: 804 QEGKEFI------EKYHQKYARVFEYLERVKKEAIAKGFVTTILGR---------RRYFE 848

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            +++                                      L   R     ++   +  
Sbjct: 849 FFDD-------------------------------------KLNRLRGEKPENLDLKKLE 871

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIVCE 635
           LN +  QL R            +Q  S DI+   M+       +    ++L VHDE+V E
Sbjct: 872 LNFSDAQLLRAAANAP------IQGSSADIIKIAMVQLQEILQQYQARLLLQVHDELVFE 925

Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            P  +     + + + M +  +    +PL  E
Sbjct: 926 VPPHEWEELEVKIKNTMENAVN--LTVPLVVE 955


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/644 (17%), Positives = 203/644 (31%), Gaps = 157/644 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
           + LK  LEN     V  N  ++  +     N  I +      TL+ +             
Sbjct: 389 KKLKSWLENPAKKKVGQNLKYDSHI---FANYHIHLQGIAHDTLLESYVLESHRRHDMDS 445

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            + +L   K    +E+    C     +  +D      +        Y   D  +T ++ +
Sbjct: 446 LSERLLDYKPISYEEI----CGKGASQIGFD------QIELDCATRYAAEDADITFQLHE 495

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            + P   K           E  +  + Q +   G  +D  L    +  + ++  +L+++ 
Sbjct: 496 NMWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQSSELALKIDELEKKA 555

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278
            S+      +    ++L   LF + GL L         +T + VL       P    +  
Sbjct: 556 YSVA-EQSFNLNSPKQLAEILFDKLGLPLVKKTPSGAPSTSEEVLEKLALDYPLPKIIL- 613

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          F G ++         P    P   R H  
Sbjct: 614 ------------------------------DFRGMAKLKSTYTDKLPRMINPETGRVHTN 643

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       ++DP+   I         +R   IA  G  +V AD + IE R++A ++
Sbjct: 644 YAQAVAVTGRLASNDPNLQNIPVKTEEGRRIREAFIAPAGCYIVSADYSQIELRIMAHLS 703

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   LKAF  G+D++  T +  F++AP +VT +QR   KV+   L Y   A      AS
Sbjct: 704 DDPGLLKAFREGQDVHKATASEIFDIAPLEVTPEQRRYAKVINFGLIYGMSAFGV---AS 760

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++     + +        +        +M                  + +++  R  
Sbjct: 761 NLGISRTDAKNYID-----RYFRRYPGVAEYM------------------DAIRQTAR-- 795

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572
                       Q + +T+   +                       L LP   S    R 
Sbjct: 796 -----------EQGYVETVFGRR-----------------------LWLPEINSPNGPRR 821

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVL 626
               R+ +N                     Q  + DI+   M+         +    +++
Sbjct: 822 QAAERAAINAPM------------------QGTAADIIKLSMIAVNDWIENEQLESKLIM 863

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
            VHDE+V E PD + E     L  LM    S    +PL A+ G+
Sbjct: 864 QVHDELVLEVPDKELERVRKRLPELMGQVAS--LKVPLIADVGF 905


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/678 (16%), Positives = 212/678 (31%), Gaps = 165/678 (24%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56
           D ET + +D       + A    ++ F+  FD          HD           V+   
Sbjct: 351 DTET-TSLD------YRIA---QIVGFSVAFDAQNAYYVPLAHDYEGAPEQLNREVILAQ 400

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           +K  LE+  V  + H+  ++  VL+   N  I +  W    +LA    N + +       
Sbjct: 401 IKPILEDESVKKIGHHLKYDAHVLE---NHGIHLAGWYFDTMLASYVLNSVATRHGMDDV 457

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A    S      +++  +  K +T   +                 Y   D  VT  +++ 
Sbjct: 458 ARLYLSHLTTTYEQVAGKGAKQKTFNQI----------PLETAAHYAAEDAHVTYRLYEV 507

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L             L + E  +  +   + + G  +D+A    L          L+ ++ 
Sbjct: 508 LSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQNLENQIM 567

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            +  G   +    +++   LF + GL      + T     S+++ +  +           
Sbjct: 568 EIA-GESFNVSSPKQVGEVLFEKLGL---KGGKKTTTGQYSTSESVLEKIEHPIAQL--- 620

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                   L++ G S+           Q  P   R H    Q +
Sbjct: 621 -----------------------ILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQAL 657

Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      ++DP+   I     I   +R   +A EG+ L+ AD + IE R++A ++ ++  
Sbjct: 658 TATGRLSSTDPNLQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEAL 717

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    +A   VT DQR   K +   L Y        +    T   
Sbjct: 718 LDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTR-- 775

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                            ++++++ +     +P                            
Sbjct: 776 -----------------QESQDYIKQYFHRYP---------------------------- 790

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            +++ + +  +  +E G                        +    GR L   D+     
Sbjct: 791 GIYDYMQRTRQVALEQG-----------------------FVETLLGRRLYTPDID---- 823

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVC 634
             N   R+          L     Q  + DI+   M+   K        ++L VHDE+V 
Sbjct: 824 ARNMMVRKAAERAAINAPL-----QGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVF 878

Query: 635 ETPDTDEFNAS-MLYHLM 651
           E  +      +  L  +M
Sbjct: 879 EVDEDIADELAPKLAEVM 896


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32]
          Length = 891

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/606 (16%), Positives = 184/606 (30%), Gaps = 92/606 (15%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55
           ID ET S                 ++  +F F DH        H             + Q
Sbjct: 317 IDLETTSLNPFE----------AEIVGISFSFSDHQAYYIPVAHHYLGVPDQLSLAHVLQ 366

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
            L+  L +  +  +  N  ++  VL+      I +    C  +LA     P  S+     
Sbjct: 367 ALRPLLLDPAIKKIGQNIKYDYQVLRRA---GIEMEGIWCDTMLASYLLNPNRSSHGLNA 423

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A++L   KM    ++               +N             Y   D   T  + K
Sbjct: 424 LAVELLDHKMISYADVAG--------SGKDQKNFAQ--VEVEKASIYSCEDADATWLLHK 473

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              P   +          E  L  +   +   G  +D+ L   L+     +  +L++E+ 
Sbjct: 474 LFLPQIEESGMERLLFELEMPLVKILAEMELYGVKLDLVLLQKLSAGFGSQLAELEREIF 533

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRM 281
               G   +    ++L   LF    L     T+T       +   ++L  +         
Sbjct: 534 QCA-GTTFNINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVDELERLAAE--------- 583

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                            +  GRL   LQ+   S+         P        R H   +Q
Sbjct: 584 -----------------HEIGRL--ILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYNQ 624

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T+     +S+P+   I         +R   IA EG  ++ AD + IE RVLA ++ ++
Sbjct: 625 AVTNTGRLSSSEPNLQNIPIRSEEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDR 684

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               AF   ED++  T A  F + P  VT + R   K +   + Y  G  +    A   G
Sbjct: 685 VFCDAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTINFGVIYGQGPFSL---AKELG 741

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +   +  +    A  F                 +G             +S 
Sbjct: 742 VSTKVAKEFID--NYFDRHAGARVFLDGCVREAEAKGHVTTILGRRLP-----IPDINST 794

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGN 575
              + +   +        G A    K+  V +    + +     L++     LV+     
Sbjct: 795 NGNIRSFAQRNAINYPIQGSAADIIKQAMVRVSGRMRREGLKSRLIMQVHDELVFEVPLE 854

Query: 576 NRSYLN 581
            +  + 
Sbjct: 855 EKLTME 860


>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
          Length = 929

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/695 (17%), Positives = 211/695 (30%), Gaps = 172/695 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID     +   A +  ++  +  F           H     P+ L         K  LEN
Sbjct: 354 IDTETTSLD--AMNAALVGISIAFQAGKAVYIPVGHSLTAAPEQLDLQYVLGYLKPHLEN 411

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119
             +  +  N  +++ V     N  I ++      +LA     + L   L  + E  L L 
Sbjct: 412 PALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGLDELSERWLGLE 468

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171
           +   E         C     +            A     EY   D      +        
Sbjct: 469 TITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFALRLEAHLRAQM 515

Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             K+LE     E  +  +   +   G  +D A     +  +  E  KL+QE  +   G  
Sbjct: 516 DAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 574

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    ++L+  LF + G+  + L +T      T + VL       P    +  NR  A 
Sbjct: 575 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA- 633

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P    P+  R H    Q + 
Sbjct: 634 ------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQAVA 663

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +++P+   I         VR    A +G  +V AD + IE R++A ++G++  +
Sbjct: 664 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 723

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G      +A + G++ 
Sbjct: 724 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 780

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            +    +                                             +  +R   
Sbjct: 781 LSAKTFID--------------------------------------------RYFARYPG 796

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578
           +   + +  EQ    G       RR               L LP  R+       G  R+
Sbjct: 797 VAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNKNANARAGAERA 841

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
            +N                     Q  + D++   M++             +++ VHDE+
Sbjct: 842 AINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDEL 883

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           V E P+ +  +    L  +M         +PL AE
Sbjct: 884 VLEVPEAELDSVKEKLPQIMAKVDDGMLKVPLVAE 918


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 119/668 (17%), Positives = 214/668 (32%), Gaps = 144/668 (21%)

Query: 33  FAFGFDDHPVELWDCVH--DPVMPQVLKEA-----LENTDVTIVAHNSYFERTVLKACFN 85
             +G +          H     + Q +  A     LE+ D      N+ F+R V      
Sbjct: 409 CCWGTETDASAYIPLAHTKGENLNQDIVLAALRPILESADYPKTFQNAKFDRLV---FLV 465

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC--LY 143
             I +   +   +LA     P        +  L         +L  R+          L 
Sbjct: 466 QGINLTGVVFDPMLASYVLNPD------TSHNL--------TDLTQRYLGLTIQNYVDLV 511

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTI 192
            + K            YC   V  T ++  +L             L   EQ L  +  T+
Sbjct: 512 PKGKTIADINISAVANYCCLQVYATFQLVAKLREELAKTPNLDKLLREVEQPLESVLATV 571

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  ++ A  H L+Q ++++  KL ++   L  G   +    ++L   LF + GL  +
Sbjct: 572 EYTGVRINSAYLHELSQQLEIDLAKLQEQATELA-GEKFNLGSPKQLSYILFEKLGLSTK 630

Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                +T      ++ +KL                            ++  G +   +++
Sbjct: 631 YSRKIQTGYSTDAATLEKLQE--------------------------VDDTGFVNAIIEY 664

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              S+         P    P   R H + +Q  T      +S+P+   I      S  +R
Sbjct: 665 RTLSKLKSTYVDALPALVRPDTQRVHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIR 724

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              +   G  +  AD + IE R+LA ++ E   ++A++  ED++  T    F      V 
Sbjct: 725 KAFLPESGWLMAAADYSQIELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVF--EKEDVN 782

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            D+R I K +   + Y  G+    K + +TG++ N     +K       + +        
Sbjct: 783 SDERRIAKTINFGVIYGMGS---LKFSRSTGIDKNVANEFIK------RFNERYAKIFAY 833

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            E   + AI   ++ T   R                                   R+  D
Sbjct: 834 LEGVKKQAISLGYVETILGR-----------------------------------RRYFD 858

Query: 546 VPLVYMKKDKNNLI--LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                ++K K +    + L   ++L   D G  RS  N                    +Q
Sbjct: 859 FTNNSLRKLKGSKPEDIDLSKLKNLGPYDAGLLRSAANAP------------------IQ 900

Query: 604 AVSRDILAEGMMNAT----KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA 658
             S DI+   M+       K    ++L VHDE+V E P  +       +  +M +     
Sbjct: 901 GSSADIIKIAMVQIHEVLKKYQARLLLQVHDELVFEVPPQEWAELQPQIKSVMENAVK-- 958

Query: 659 KGLPLKAE 666
             +PL  +
Sbjct: 959 LSVPLVVD 966


>gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
          Length = 930

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 126/705 (17%), Positives = 219/705 (31%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  L N  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+ +
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPDMISPQDN 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A  G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +A EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGVAEYMQRAKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622
                 G  R+ +N                     Q  + D++   M++           
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNWLSDGIDS 874

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919


>gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 922

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 113/640 (17%), Positives = 199/640 (31%), Gaps = 148/640 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSAL 109
           LK  LEN +   V  ++ FE  +L  C      N  I +       +L     +   +  
Sbjct: 390 LKPLLENPNKLKVGQHAKFETNILANCAIGGDQNNGILVQGIAFDTMLESYVLDSTATRH 449

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                ALK   Q   + +++  +  K  T + +          +  L G Y   D  VT 
Sbjct: 450 DMDSLALKYLGQSKTDFQDIAGKGVKQLTFDQI----------SLELAGPYAAEDADVTF 499

Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L+            L+  E  L  +   I  +G  VD  L    +  +  +   L
Sbjct: 500 RLHQALQEKLAATPSLGTVLNDIEMPLMPVLARIERQGALVDANLLGVQSVELGEKLVAL 559

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           ++E  ++  G   +    ++L   L+ + GL +   T         +      +      
Sbjct: 560 EREAFAIA-GEEFNLGSPKQLGVILYEKLGLPVLSKTAKGQASTAEAVLAELAEQDYPLP 618

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
             +                          +Q+   S+         P Q   R  R H  
Sbjct: 619 KVL--------------------------MQYRSLSKLKSTYTDRLPEQINSRTGRVHTN 652

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       + DP+   I         +R   +A +G KL+ AD + IE R++A +A
Sbjct: 653 YQQAVAATGRLSSIDPNLQNIPIRTSEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 712

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF    D++  T A  F V    VT DQR   K +   L Y   A     +A 
Sbjct: 713 KDEGLLYAFRHNLDVHRATAAEVFGVELEAVTLDQRRSAKAINFGLIYGMSAF---GLAK 769

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++       +        +        +M+    + A                    
Sbjct: 770 QIGVDRKQSQAYID-----RYFARYPGVLAYMERTRAQAA-------------------- 804

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                       Q F +TI         +R  +P +  K          P+ R       
Sbjct: 805 -----------EQGFVETI-------FGRRLYLPDINAKN---------PALRK------ 831

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
           G  R+ +N                     Q  + DI+ + M+   +          ++L 
Sbjct: 832 GAERTAINAPM------------------QGTAADIIKKAMVAVDRWLTTSGLDAKVILQ 873

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  +         +   M++  +    +PL  E
Sbjct: 874 VHDELVLEVREDLVDQVRDEIRQHMSAAAT--LDVPLLVE 911


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 111/645 (17%), Positives = 202/645 (31%), Gaps = 164/645 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110
           LK  LE+  +  V  N  ++ ++             D  +  ++   V ++ N    ALK
Sbjct: 421 LKPLLEDPKLKKVGQNLKYDISIFANVGIKLQGVAFDTMLESYVFNSVASKHNMDDLALK 480

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +G        K    +E+  +  K  T   +                 Y   D  +T  
Sbjct: 481 YLG-------HKNISFEEIAGKGAKQLTFNQI----------DLETAAPYAAEDADITLR 523

Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L     KE             L  +   I  +G  +D  +    +Q + +   KL+
Sbjct: 524 LHQHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVLIDSMMLGQQSQEIAISIDKLE 583

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275
           Q+   +  G   +    ++L+   F + G  +   T      T + VL       P    
Sbjct: 584 QDAFEIA-GETFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKI 642

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R  A                               +         P     +  R 
Sbjct: 643 ILQHRSLA-------------------------------KLKSTYTDKLPLMVNAQSGRV 671

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H    Q         +S+P+   I         +R   IA EGKK++ AD + IE R++A
Sbjct: 672 HTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAQEGKKVLAADYSQIELRIMA 731

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  L AF  G+D++  T A  F V  ++VT +QR   K +   L           
Sbjct: 732 HLSQDKGLLTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGLI---------- 781

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G++    A  +          +A+ +     + +P               V K  
Sbjct: 782 ----YGMSAFGLARQLDIPRG-----EAQKYIDTYFDRYP--------------GVLKYM 818

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
               +  ++L                + +  +R  +P +   KD+N +            
Sbjct: 819 EDTRAEAADLGY-------------VSTLYGRRLYLPAI---KDRNAMRRQ--------- 853

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYD 623
                 R+ +N                     Q  + DI+ + M+N        T     
Sbjct: 854 ---AAERAAINAPM------------------QGTAADIIKKAMINIASWIESETHGEIT 892

Query: 624 IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           +++ VHDE+V E   D  E     +  +M    S    + L AEG
Sbjct: 893 MIMQVHDELVFEVDSDKAEALKEQICKMMADAVS--LDVELLAEG 935


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 98/539 (18%), Positives = 172/539 (31%), Gaps = 78/539 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVG 113
           + L+  LE+     V  N  ++R+VL    N  I +       +L +             
Sbjct: 413 EKLRPLLESEKYKKVGQNLKYDRSVL---LNHGIELKGIKFDTMLESYVLDSTGRHDMDT 469

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF- 172
            ALK    +    +E+  +  K      +          +      Y   D  VT  +  
Sbjct: 470 LALKYLGHQCISFEEIAGKGKKQLPFNQI----------SIIEAAPYAAEDADVTLRLHL 519

Query: 173 ----------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                     K L   ++ E  L  +   I   G  +D  L    +  +     +L+   
Sbjct: 520 QLFEQLSAEPKLLSVFNNIELPLLTVLSDIERGGVEIDSDLLTKQSAEIGKRLLELEALA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
                G   +    ++L+T L+ E  L +   T      T + VL       P    +  
Sbjct: 580 YEEA-GKPFNLSSPKQLQTILYDELELPVLKKTPKGAPSTAEEVLQELALTYPLPKLIIE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G S+         P     +  R H  
Sbjct: 639 HR-------------------------------GLSKLKSTYTDKLPKMVNEKTGRLHTS 667

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      ++DP+   I         +R   IA  G K+V AD + IE R++A ++
Sbjct: 668 YQQAVTVTGRLSSTDPNLQNIPIRSAEGRRIRQAFIAQPGYKIVAADYSQIELRIMAHLS 727

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF TG+D++  T +  F+V   +VT +QR   K +   L Y   A     +A 
Sbjct: 728 QDKGLLDAFSTGKDIHKATASEVFSVPLDEVTTEQRRSAKAINFGLIYGMSAF---GLAK 784

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +  +     +                    E+    A E  ++ T   R +      
Sbjct: 785 QLNIGRHEAQLYMDKYFNRYP------GVLIYMEDTRSLANEKAYVETILGR-RLQLPNI 837

Query: 514 HSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            SR   L     +A       G A  II +   D+     +K   ++ +++     LV+
Sbjct: 838 KSRNGMLKKAAERAAINAPMQGTAADIIKKAMIDMADWIAQKSPGSVQMLMQVHDELVF 896


>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
 gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
          Length = 930

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 125/706 (17%), Positives = 217/706 (30%), Gaps = 180/706 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A D  ++  +  F           H     P+ L    
Sbjct: 352 TIGIDTET-TSLD---------AMDASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 402 VLGRLKPHLENPVLKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 458

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 459 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 505

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 506 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 565

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +       +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 566 QEAYAAAS-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 624

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 625 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 653

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 654 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 713

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 714 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY-- 771

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 772 -GLAKSLGIDNLSAKNFID----------------------------------------- 789

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 790 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 831

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621
                 G  R+ +N                     Q  + D++   M++           
Sbjct: 832 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLK 873

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +++ VHDE+V E P+ + +     L  +M         +PL AE
Sbjct: 874 SKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLKVPLVAE 919


>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
 gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
          Length = 610

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 100/625 (16%), Positives = 192/625 (30%), Gaps = 151/625 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN +   +  N  F+ ++          +     T++L+ +            A 
Sbjct: 89  IKPILENPNSHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 146

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 147 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 196

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 197 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 256

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +         +T + VL            +  +R 
Sbjct: 257 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 314

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 315 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 344

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 345 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 404

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 405 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 461

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                                           + Q++  
Sbjct: 462 ISRADAQKYMN-----------------------------------------LYFQRYPS 480

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575
           V +   ++ +A  +     + +  R+                 L LP   S    R  G 
Sbjct: 481 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 522

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
            R  +N                     Q  + DI+   M+   +        ++++ VHD
Sbjct: 523 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 564

Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654
           E+V E   +   F    +   M + 
Sbjct: 565 ELVFEVRSEKVAFFREQIKQHMEAA 589


>gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM
           22836]
          Length = 933

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 95/592 (16%), Positives = 186/592 (31%), Gaps = 82/592 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70
           D    G+        ++  +F F +          D      +    +   EN  +  + 
Sbjct: 366 DTETTGLDPIVS--ELVGMSFAFKEGEAYYVPVPADFDEAKKLIDKFRPFFENEKILKIG 423

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VLK     DI +   +   ++A     P         A      +     EL
Sbjct: 424 QNIKYDIIVLKKY---DIHVRGKLFDTMIAHYLINPELRHNMDYMAETYLKYRTIHIDEL 480

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181
           I    K      L  R+            +Y   D  VT ++ + LE    K        
Sbjct: 481 IGAKGK----NQLNMRSLRP-----DQISDYACEDADVTLKLKRILEKAIEKQDLSKLFY 531

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y+   +   G  +D       ++ + +E   ++ E+  L      +    +++
Sbjct: 532 EIELPLIYVLADMEFTGVRLDTVALGEYSKTLTIELQNIESEIFKL-GETEFNINSAKQV 590

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  +      T+T    T +  L S K   P   ++   R              
Sbjct: 591 GEVLFDKLKIIDKPKKTKTGQYVTSEETLESIKNTHPIVNKILEYR-------------- 636

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                            G  +         P    P+  + H   +Q +T      +++P
Sbjct: 637 -----------------GLKKLLSTYIDALPLLVEPKDGKIHTSFNQTVTATGRLSSTNP 679

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R   IA EG     AD + IE R++A ++ +   ++AF +GED++
Sbjct: 680 NLQNIPIRDAQGREIRKSFIADEGCLFFSADYSQIELRIMAHLSQDPSMVEAFNSGEDIH 739

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A+ + +   +VT D R   K     + Y         +A    +       L+   
Sbjct: 740 AATAAKIYKLKIDEVTSDMRRKAKTANFGIIYGISVF---GLAERLTIPRGEAKELIDG- 795

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                + +     +   +     A E  ++ T   R K+     +SR + +     +   
Sbjct: 796 -----YFETYPKVKEYMDKCITDAREKTYVETVFGR-KRYLPDINSRNATVRGYAERNAI 849

Query: 530 QT-IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              I+   A I +   +      +K+     ++L     L +  + N    +
Sbjct: 850 NAPIQGSAADIIKVAMNNIFKRFEKENIKSKMILQVHDELNFNVLENEIDKV 901


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 119/691 (17%), Positives = 215/691 (31%), Gaps = 168/691 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----------DPVMPQVLKEALEN 63
           D     +  Y E   ++  +F  D+         H           D V+ Q LK  LE+
Sbjct: 343 DTETTSLN-YIE-AELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEVLKQ-LKPLLES 399

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121
                V  N  ++ +VL    N DI +       +L     N + S       AL   + 
Sbjct: 400 EKHKKVGQNLKYDMSVLA---NYDIELAGIEFDTMLESYCLNSVASRHDMDTLALHHLNH 456

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
              + +E+  +     T + +                 Y   D  +T  + ++L P   +
Sbjct: 457 VNIKFEEIAGKGKNQLTFDQI----------EVEQAAPYASEDADITMRLHQKLWPELKQ 506

Query: 182 -----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                      E  L  +   +   G  VD  L    + + +    +L++E   +  G  
Sbjct: 507 NEGPTQIFQHIEMPLLRILSKVERNGVLVDGKLLLEKSHLFEKRLKELEKEAYEIA-GKE 565

Query: 231 SSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+   + E GL +         +T + VL       P    +  +R      
Sbjct: 566 FNLGSPKQLQVIFYEELGLPILKKTPKGQPSTAEEVLQELALDYPLPKLILEHR------ 619

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                    G S+         P     +  R H    Q I   
Sbjct: 620 -------------------------GLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIAAT 654

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +++P+   I         +R+  IA +G K++ AD + IE R++A ++ ++  LKA
Sbjct: 655 GRLSSTEPNLQNIPIKTEEGRSIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEGLLKA 714

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE G D++  T A  F+V   +VT +QR   K +   L                G++   
Sbjct: 715 FEEGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLI--------------YGMSAFG 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  + T+        A+++       +P   +E     T                    
Sbjct: 761 LAKQIDTDR-----NTAQDYINTYFARYP--GVETYMESTKE------------------ 795

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  +         +  +R  +P ++ K                  R     R+ +N
Sbjct: 796 -------KAADLGYVETLYGRRLYLPEIHSKN---------------GMRRKAAERTAIN 833

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEIVCET 636
                                Q  + DI+   M+   K      G  +++ VHDE+V E 
Sbjct: 834 APM------------------QGSAADIIKLAMLEVDKWLKDVKGIKMIMQVHDELVFEV 875

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +   E     +  LM S       +PL A+
Sbjct: 876 EEDKLELAQKEIPKLMQSVAE--LSVPLIAD 904


>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 932

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 121/695 (17%), Positives = 212/695 (30%), Gaps = 172/695 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID     +   A +  ++  +  F+          H     PQ L         K  LEN
Sbjct: 357 IDTETTSLD--AMNAQLVGISIAFEAGEAAYIPLGHSMTAAPQQLDLQDTLGRLKPHLEN 414

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119
             +  +  N  +++ V     N  I +       +LA     + L   L  + E  L L 
Sbjct: 415 GSLKKIGQNLKYDQHV---FANYGIALRGIAGDAMLASYIVESHLGHGLDELSERWLGLP 471

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-L 178
           +   E         C     +            A     EY   D      +   L   +
Sbjct: 472 TITYES-------LCGKGAKQIS------FADVAVEQAAEYAAQDADFALRLEAHLRAQM 518

Query: 179 SSKEQELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             K+ E++         +   +   G  +D A     +  +     KL+++    T G  
Sbjct: 519 DEKQLEMYLNLELPVAQVLFEMERNGVHIDRAELAAQSSELGAALLKLEEQAFQ-TAGQP 577

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    ++L+  LF + G+  + L +T      T + VL       P    +  NR  A 
Sbjct: 578 FNLNSPKQLQEILFDKMGIPTKGLKKTASGGISTNEAVLEQLAPDYPLPKIILENRSLA- 636

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P    PR  R H    Q + 
Sbjct: 637 ------------------------------KLKSTYTDKLPEMINPRTGRVHTTYSQAVA 666

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S+P+   I         VR    A  G  +V AD + IE R++A ++G++  +
Sbjct: 667 ITGRLASSNPNLQNIPIRTAEGRRVRRAFTAPAGSLIVSADYSQIELRIMAHLSGDKTLM 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G      +A + G++ 
Sbjct: 727 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 783

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            +  + +                                             +  +R   
Sbjct: 784 LSAKNFID--------------------------------------------RYFARYPG 799

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578
           +   + +  E+    G       RR               L LP  R+       G  R+
Sbjct: 800 VAEYIQRTKEEAAAQGYVETLFGRR---------------LYLPDIRAKNANARAGAERA 844

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEI 632
            +N                     Q  + D++   M+  +   +       +++ VHDE+
Sbjct: 845 AINAPM------------------QGTASDLIKRAMIAVSSRLHSDGLESKLIMQVHDEL 886

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E  + + E    ML  +M         +PL AE
Sbjct: 887 VLEVVENELETVKEMLPQVMAEVAQGRLNVPLLAE 921


>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
 gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
          Length = 924

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/539 (16%), Positives = 164/539 (30%), Gaps = 78/539 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
             L+  L++     +  +  ++  VL+      + +  +    +L     N   +     
Sbjct: 399 DALRSVLQDPAKKKLGQHGKYDLHVLRRH---GVQVQGYHDDTMLESFVLNSTATRHDMD 455

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+       + +++  +  K            P  +        Y   D  +T  + 
Sbjct: 456 SLALRYLGYSTIKFEDVAGKGAKQ----------IPFSQVGIDEASRYAAEDADITLRLH 505

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             L+P               E  L  +  +I   G  VD       +Q +        Q+
Sbjct: 506 HALQPQLLAEPALDSVYRGIEMPLVPVLASIEANGVRVDTDELRRQSQDLSSRMLAAQQK 565

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVF 277
              L  G   +    ++L+  LF E  L           +T +  L +            
Sbjct: 566 ATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP---- 620

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                      R  L++ G ++         P    P   R H 
Sbjct: 621 ---------------------------RVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHT 653

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q         +SDP+   I         +R   +A EG +L+ AD + IE R++A +
Sbjct: 654 SYHQSGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPEGFQLLAADYSQIELRIMAHL 713

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   ++AFE G D++  T A  F     +VT ++R   K +   L Y   A     +A
Sbjct: 714 SEDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAF---GLA 770

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++       V        +    +F   M++   +    +   G            
Sbjct: 771 RNLGIDRGQAQDYV--ALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRL-----YLND 823

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVY 570
            H+R   L     +A       G A    KR  V +    +D      ++L     LV+
Sbjct: 824 IHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVF 882



 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 78/244 (31%), Gaps = 33/244 (13%)

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTG-LNLNTFAHLVKTNSAPEEWEDAENFCR 483
           T+D R I +            + FQ +A+    + L   AHL +       +E   +  R
Sbjct: 679 TEDGRRIRRAFV-------APEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHR 731

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                           G   E V    R+    ++        AF      G  I   + 
Sbjct: 732 ATAAE---------VFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLG--IDRGQA 780

Query: 544 RDVPLVYMKKDKN---NLILMLPSGRSLVYRD-VGNNRSYLNTTTR--QLTREYTYGGKL 597
           +D   +Y  +       +  M    R   Y + +   R YLN      Q  R        
Sbjct: 781 QDYVALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERA-A 839

Query: 598 TENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT-DEFNASMLYHL 650
               +Q  + DI+   M++  +      A   ++L VHDE+V ET  +  E     +   
Sbjct: 840 INAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVER 899

Query: 651 MTSN 654
           M+  
Sbjct: 900 MSQA 903


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 196/634 (30%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGE 114
            LK  LEN ++  +  N  ++ T+        I +      T++ + +            
Sbjct: 431 QLKPILENPNIRKIGQNIKYDLTIFARY---GIELQGVAFDTMLQSYTLDSTGRHNMDNL 487

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    +    +EL  +     T + +                EY   D  +T ++ + 
Sbjct: 488 AERYLGHQTIPFEELAGKGKHQLTFDQI----------ELDKATEYAGEDAEITMKLHQL 537

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L     K           E  L  +   +   G  +D A     +  ++    +L+  + 
Sbjct: 538 LWSELQKTPELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVH 597

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G V +    ++L+  LF + GL +   T            +   Q        +  
Sbjct: 598 QEA-GEVFNLASTKQLQEILFNKLGLPILKKTPKGAPSTNEEVLEELAQMGHQVPVLLME 656

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P     +  R H    Q +
Sbjct: 657 HR--------------------------GLSKLKSTYTDKLPQMINAQTGRVHTSYHQAV 690

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA +G  ++ AD + IE R++A +A +   
Sbjct: 691 TATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIMAHLANDANM 750

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +KAF  G+D++ +T A  F V    VT +QR   K +   L Y         +A+  G++
Sbjct: 751 IKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEF---GLANQLGIS 807

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                             DA+ +     + +P           A ++     R+K     
Sbjct: 808 RT----------------DAKKYMELYFQRYP-----------AVQQFMLDIREK----- 835

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  + + +T+                                GR L   ++ ++  
Sbjct: 836 ----AAEKGYVETLF-------------------------------GRRLYLPEINSS-- 858

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   +A        +++ VHDE+V
Sbjct: 859 --NQMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDQAVRNCEDIAMIMQVHDELV 911

Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E   D  E    ++   M         +PL AE
Sbjct: 912 FEVKADRVEHYTQLIKAEMEKAIE--LKVPLIAE 943


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 117/660 (17%), Positives = 211/660 (31%), Gaps = 146/660 (22%)

Query: 41  PVELWDCVHDPVMP-QVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           P EL +      +P + +  AL     +        N+ ++R +L       + ++  + 
Sbjct: 440 PSELTEATPPQQLPLETVLMALSPWLASPQHPKALQNAKYDRLIL---LRHGLTLNGVVI 496

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             +LA        L+       L      E         +  T+  L  + +        
Sbjct: 497 DTLLADY------LRDAAAKHGLDVMSEREF------GFRPTTYGDLVGKKQTFADVEIE 544

Query: 156 LFGEYCKGDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
               YC  DV VTR +             + L  L   EQ L  +   +   G  +DV  
Sbjct: 545 PASLYCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPY 604

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---T 258
             TL+  +     +L+ E + +   +  +    ++L   LF   GL  +    T+T   T
Sbjct: 605 LKTLSDELGSTLNRLETEAKQVA-EVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFST 663

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    V  +R+                                S+   
Sbjct: 664 DATVLEKLEHDHPVVPLVLEHRVL-------------------------------SKLKS 692

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373
                 P        R H + +Q +T      +S+P+   I      S  +R   +  EG
Sbjct: 693 TYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEG 752

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE R+L  ++GE+   +A+ TG+D++  T      +   +V+ DQR +GK
Sbjct: 753 WTLLSADYSQIELRILTHLSGEEVLQEAYRTGDDVHALTARLL--LDKDEVSADQRRLGK 810

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y  GA   Q+ A  TG++       +      + +     F     E     A
Sbjct: 811 TINFGVIYGMGA---QRFARETGVSSAEAKEFL--TKYKQRYPKVFAFL----ELQERLA 861

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           +   ++ T   R +                                              
Sbjct: 862 LSRGYVETILGRRRP------------------------------------------FHF 879

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
           D+N L  +L         ++  + +       Q  R            +Q  S DI+   
Sbjct: 880 DRNGLGRLLGKD----PLEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVA 929

Query: 614 MMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           M+              ++L VHDE+V E  PD  +   +++ + M +       +PL  E
Sbjct: 930 MVQLQAMLLSQGIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAIK--LSVPLVVE 987


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 93/600 (15%), Positives = 189/600 (31%), Gaps = 86/600 (14%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTDVTIV 69
            +D    G      ++  + FA+  +     PV   D      +    K   EN     V
Sbjct: 354 SLDTETTGTDPIRAELVGMSFAYAENQAFYVPVPA-DRTEAQRIVDKFKPVFENPQTLKV 412

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKMEE 125
             N  ++  VL    N  + I   +   ++A     P     +  + E  L   + K+EE
Sbjct: 413 GQNIKYDMLVLA---NYGVEIQGPMFDTMIAHYVLQPELHHGMDYLAEIYLHYETIKIEE 469

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---- 181
                      +       R+             Y   D  VT ++   LE    +    
Sbjct: 470 -------LIGPKGKNQKNMRDLDP-----ANIYRYACEDADVTLKLKNVLEKELKQNDAE 517

Query: 182 ------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
                 E  L  +   +   G  +D       ++       ++++E+  L  G+  +   
Sbjct: 518 ALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHRLA-GVEFNIAS 576

Query: 236 LEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +++   LF     +     T+T    T + VL S K       ++  +R          
Sbjct: 577 PKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLKGKHEIVEKILEHR---------- 626

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                                G  +         P    P     H   +Q +T      
Sbjct: 627 ---------------------GLKKLLGTYIDALPQLINPETGHIHTSFNQTVTATGRLS 665

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +S+P+   I         +R   I  EG +   AD + IE R++A ++G+   ++AF   
Sbjct: 666 SSNPNLQNIPVRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFRAN 725

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +D++  T A+ +      VT++QR+  K     + Y         +A   G++      L
Sbjct: 726 QDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVF---GLAERLGIDRKEAKEL 782

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +        + +     +   ++  + A +  +I T   R ++     +SR + +     
Sbjct: 783 IDG------YFENYPHVKEYMDSSIQAARQKGYIETVFRR-RRYLPDINSRNAVVRGYAE 835

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTT 584
           +        G A    K   + +    +++     ++L     L +  V   +  +    
Sbjct: 836 RNAINAPIQGSAADIIKVAMIRIYRRFREEGIRSKMILQVHDELNFSVVPEEKEKVQQIV 895


>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
 gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
          Length = 933

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 126/706 (17%), Positives = 222/706 (31%), Gaps = 180/706 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 355 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 404

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 405 VLGRLKPHLENPVLKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 461

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 462 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFA 508

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 509 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 568

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G + +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 569 QEAYA-AAGQLFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 627

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 628 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 656

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 657 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 716

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 717 MAHLSGDKTLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 774

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +    +                                          
Sbjct: 775 -GLAKSLGIDNLSAKTFID----------------------------------------- 792

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 793 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 834

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621
                 G  R+ +N                     Q  + D++   M++ ++        
Sbjct: 835 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSDDLLQ 876

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +++ VHDE+V E P+++ +   + L  LM         +PL AE
Sbjct: 877 SKLIMQVHDELVLEVPESELDLVKTNLPELMADVGKGLLNVPLVAE 922


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 200/621 (32%), Gaps = 145/621 (23%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGE 114
            LK  LEN  +  +  N  ++ T+     N  I ++     T++ +              
Sbjct: 429 QLKPLLENPSIQKIGQNIKYDLTI---FANHHIQLNGVCFDTMLQSYVLDSTGRHNMGAL 485

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    ++ E + +  +  K  T + +          A     EY   D  +T ++ + 
Sbjct: 486 SERYLGHQVIEFESIAGKGKKQVTFDKI----------AIAQATEYAAEDADITMKLHQV 535

Query: 175 L------EP-----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L       P      +  E  L  +  T+   G  +D       ++ +    T L+Q++ 
Sbjct: 536 LWQELQQSPSLVKVFNDIELPLVKVLSTMERNGVLIDSQALLKQSEKIARRLTALEQQVY 595

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G   +    ++L+  LF +  L +   T            +   Q   +    +  
Sbjct: 596 QEA-GAEFNLASTKQLQEILFTKLALPIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLME 654

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G ++         P     +  R H    Q +
Sbjct: 655 HR--------------------------GLAKLKSTYTDKLPSMVNKKTGRVHTSYHQAV 688

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I        C+R   IA +G K++ AD + IE R++A ++ +   
Sbjct: 689 TATGRLSSSDPNLQNIPIKNEEGRCIRQAFIARKGYKIIAADYSQIELRIMAHLSQDNGL 748

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++ +T A  F +   +VT +QR   K +   L Y   +     +++  G++
Sbjct: 749 IMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIS 805

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                             +A+ +     + +P             +      R+K     
Sbjct: 806 R----------------ANAQKYMDLYFQRYP-----------GVQTFMVDIREKAK--- 835

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNR 577
                  Q + +T+   +                       L LP   S    R  G  R
Sbjct: 836 ------EQGYVETLFGRR-----------------------LYLPEINSSNAIRRKGAER 866

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIV 633
             +N                     Q  + DI+   M+       K    +++ VHDE+V
Sbjct: 867 VAINAPM------------------QGTAADIIKLAMIAIHNEIKKNDIQMIMQVHDELV 908

Query: 634 CETPDT--DEFNASMLYHLMT 652
            E  +   DE++A ++  LM 
Sbjct: 909 FEVKENKVDEYSA-LIKSLME 928


>gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
 gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 119/702 (16%), Positives = 211/702 (30%), Gaps = 180/702 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID ET S   +             ++  +F  +          H  P  P+ L       
Sbjct: 342 IDTETDSLEPMK----------ARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAVLA 391

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAV 112
             K  LE+     +  N  ++R V     N  I +       +L         P +L+++
Sbjct: 392 RLKPWLEDASRAKLGQNLKYDRHV---FANAGIALAGVRHDTMLESYVLEAHKPHSLESL 448

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E              L  +    E          P  +       EY   D  +   + 
Sbjct: 449 AERH------------LGRKGLSYEDLCGKGVNQIPFAQVDVARATEYSAEDSEMALHVH 496

Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P             + E  +  +   I   G  VD       ++ +      L+QE
Sbjct: 497 QVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLVDPQELARQSRDLAERMVALEQE 556

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
           + ++      +    +++   LF + GL ++  T     +T + VL+      P   ++ 
Sbjct: 557 VYAIA-EQPFNLGSPKQIGEILFGKLGLPVKKRTASGAPSTDEDVLTELAADYPLPARIL 615

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R  A                               +         P    P   R H 
Sbjct: 616 EHRSLA-------------------------------KLKGTYTDKLPAMVNPATGRVHT 644

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +       +++P+   I         VR   +A  G  ++ AD + IE R++A +
Sbjct: 645 NYAQAVAVTGRLASNEPNLQNIPIRTPEGRRVRRAFVAPPGHVILSADYSQIELRIMAHI 704

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L+AF  G D++  T A  F +  A+VT +QR   KV+   L Y  GA     +A
Sbjct: 705 SEDEGLLRAFSEGLDVHRATAAEVFGMPLAEVTSEQRRYAKVINFGLIYGMGAY---GLA 761

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +  G+        +                                             +
Sbjct: 762 ANLGIEQKAAKDYID--------------------------------------------R 777

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YR 571
             +R + +   + +   +  E G       RR               L LP   S    R
Sbjct: 778 YFARFAGVKRYMDETRVRAKEKGYVETVFGRR---------------LWLPEINSGNGPR 822

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625
             G  R  +N                     Q  + D++   M+   K          +V
Sbjct: 823 RSGAERQAINAPM------------------QGTAADLIKLAMIAVQKELDASGRATRMV 864

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P+ + ++    +  LM      A  +PL AE
Sbjct: 865 MQVHDELVLEVPEAELDWAKDAIPRLMAGVA--ALKVPLLAE 904


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 118/704 (16%), Positives = 215/704 (30%), Gaps = 157/704 (22%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDPVMPQV-----L 57
           D ET S   L             ++     + + P  L            +        L
Sbjct: 335 DTETNSIDPLE----------ADLVGIGCCWGEGPTALAYIPVGHTAGEQLSMETVLSAL 384

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL 116
           K  LE+     V  N+ ++R VL+      + +   +   +LA     P  +      AL
Sbjct: 385 KPILEDQQYPKVFQNAKYDRLVLRRA---GVSLTGVVFDPMLASYVLNPENSHNLSDLAL 441

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +          +L+              + K     A     +YC  DV  T  +   L+
Sbjct: 442 RYLELTTVSYTDLVP-------------KGKTIGEVAIAEVAQYCGSDVHTTYRLVPLLK 488

Query: 177 P-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                        +  E  +  +   +   G  +D A  +  ++ ++ +   +++     
Sbjct: 489 ADLQEVPDLATLYTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKAAYD- 547

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNR 280
             G   +    ++L    F + GL      +     +T    L   +   P    V    
Sbjct: 548 AAGEEFNLGSPKQLSELFFEKLGLDKRKSRKNKTGYSTDAATLEKLQGDHPVVDSV---- 603

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                      +++   S+         P    P   R H + +
Sbjct: 604 ---------------------------VEYRTLSKLKSTYVDALPALIRPNTGRVHTDFN 636

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q IT      +S+P+   I      S  +R   +  EG +LV AD + IE R+LA ++ E
Sbjct: 637 QAITTTGRLSSSNPNLQNIPTRTAFSRQIRQAFLPKEGWQLVAADYSQIELRILAHLSEE 696

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +K +   ED++  T    F+    ++T ++R + KV+   + Y  GA  F +     
Sbjct: 697 PILIKTYREDEDVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMGAARFAREMDIH 756

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L+  TF      +   + + +   + + MQ     +                       
Sbjct: 757 RLDAKTF-----IDRFNQRYPNVFEYLQQMQREAIAYG---------------------- 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                               K I  R+R            N     L + +      +  
Sbjct: 790 ------------------YVKTIAGRRRYF----------NFTTRSLQALKGTDPTKIDL 821

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--AGYD--IVLTVHDE 631
           +    N     L R            +Q  S DI+   M+   +   GY   ++L VHDE
Sbjct: 822 SSLRTNGYDAGLLRAAANAP------IQGSSADIIKVAMIRLHELLKGYQANMLLQVHDE 875

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++ E P  + E     +   M    S A  +PLK E    K + 
Sbjct: 876 LIFEVPPDEWEELQPKIEQTMEDAVSLA--VPLKVEAQAGKNWM 917


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/544 (16%), Positives = 182/544 (33%), Gaps = 72/544 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70
           D    G+     D  ++  +F F+                  +  + K  LE+ ++  V 
Sbjct: 362 DTETTGLDALVAD--IVGLSFAFEKGKAYYVPTPDSREQALEIVNIFKPVLEDANIEKVG 419

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKEL 129
            N  ++  +L      D+ +   +   +LA     P         A            +L
Sbjct: 420 QNIKYDILLLSRY---DVKVKGTLFDTMLAHYLIDPDTRHGMDVLAENYLGYIPVSITKL 476

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181
           I    KG+    + D           L  EY   D  +T ++ ++ EPL  +        
Sbjct: 477 IGE--KGKKQGNMRD-------VEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQ 527

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y+   I   G  +DV +    ++ ++ +   L+  +     G+  +    ++L
Sbjct: 528 EVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEKA-GVKFNIASPKQL 586

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF +                     +L P+A +    + +     +L L    + + 
Sbjct: 587 GEVLFDKL--------------------QLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQ 626

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   L F    +         P    P     H   +Q +       +++P+   I
Sbjct: 627 D------ILDFRQLQKLKSTYVDALPGLINPTTGLIHTSYNQAVAATGRLSSTNPNLQNI 680

Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    VR   I  SE   ++ AD + IE R++A ++ +   L+AF+ G D++  T 
Sbjct: 681 PIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATA 740

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A+ + +   +V+ DQR   K +   + Y   A    +   + G+     A ++       
Sbjct: 741 AKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQ---SLGIPRREAADIID------ 791

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
           ++    +  R         A E+ F+ T  +R ++  R  +S    +     +       
Sbjct: 792 QYFQQYSGIRDYMAKAIASAKENGFVETILKR-RRYLRDINSANMTVRGFAERNAINAPI 850

Query: 534 NGKA 537
            G A
Sbjct: 851 QGSA 854


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 103/542 (19%), Positives = 206/542 (38%), Gaps = 51/542 (9%)

Query: 1   MATLFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + T   + ET + +  D+   G+  +     + L      + PV L +        + L+
Sbjct: 56  LVTALKELETHTVVGLDIETTGLDPHTS--EISLIQIAAPNRPVILIE-FRGITNKETLR 112

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEAL 116
             +E+  +  V HN  FE   L     ++     WI T+++++    GLP  L+   +  
Sbjct: 113 RFIEHPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTG 172

Query: 117 KLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            L     ++ ++  K+L              +RN P      R+        +  + ++ 
Sbjct: 173 VLPIPDLTRSIKNKKKLKQEL----------NRNLPGSYSLMRVVARELGYSLDKSLQVS 222

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL------NQIVDVERTKLDQELESLT 226
              +PL+ ++ +        ND    +   L   L      NQ+ D  + +L        
Sbjct: 223 DWGKPLTQEQLQY-----AANDAAVVL--PLREALRNKIIDNQLTDAIQVELGALARVAQ 275

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT----PQAIQVFNNRMR 282
            GL+     L++    L  E     ED  +  CQ +   + +L       +I + +N   
Sbjct: 276 MGLMGMGLDLDRWGE-LAKEIETRREDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQV 334

Query: 283 ASRSAVLKLNTLVEAMNSDGRLR-------GTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            +  A L ++T   + ++  +L          +++   S+     G   P    P   R 
Sbjct: 335 IAALARLGIHTDSTSKDTLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRI 394

Query: 336 HEELDQIITHLPTSITSDPDPLQIIS-DCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           H  ++Q+         S+P+  QI      RSC + + G KL++AD + IE R+ A +A 
Sbjct: 395 HPNVNQMRAASGRFSFSNPNLQQIPRERQYRSCFVPAPGYKLIIADYSQIELRIAAEIAN 454

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS- 453
           +   + A+   +DL+  T A        +VTK +R +GK +   L Y  GA   +  A  
Sbjct: 455 DSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMGATKLRIYAET 514

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+++         ++  + +     + +          ++D  I T   R+++ W+ +
Sbjct: 515 NYGVSMTFDEAQRFRDNFFKGYPGLHQWHQDTACKLRTTKVKD--IRTLSGRLRR-WKDE 571

Query: 514 HS 515
             
Sbjct: 572 PP 573


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 102/581 (17%), Positives = 204/581 (35%), Gaps = 70/581 (12%)

Query: 27  DVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
           +  +I  +F +                   + +  +   E   +  +AHN  ++  VL  
Sbjct: 378 EAELIGISFSYKKGLAYYVPIPENRAEAQAIVERFRPFFEKESILKIAHNLKYDYKVL-- 435

Query: 83  CFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
             N  I +   +   ++A     P         +    + K    + LI +  KG+    
Sbjct: 436 -LNYGIEVTGNLFDTMIAHYLLNPDGRHGMDYLSEMYLNYKPIALETLIGKKGKGQKT-- 492

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191
           L + + P          +Y   D  +T ++++   P   KE+           L  +   
Sbjct: 493 LREIDLPTQ-------TQYAAEDADITFQLYEIFSPQLKKEEVEEVFYKIEMPLVKVLAK 545

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  +D       +  ++ +   L+ ++     G   +    ++L   LF +     
Sbjct: 546 MELTGVALDEEWLKDESISLEQDLKILEGQIFEQA-GEEFNINSPKQLGDILFEKL---- 600

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
                           KL P+A +    +   S   + KL+   E       ++  L++ 
Sbjct: 601 ----------------KLDPKAKKTKTGQYSTSEDVLQKLSHKHEI------IKLILEYR 638

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366
              +         P Q  P   R H    Q +       +++P+   I         VR 
Sbjct: 639 QLQKLKSTYVDALPNQISPIDGRVHTSFAQTVAATGRLASNNPNLQNIPIRTERGQQVRG 698

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +A +G K+V AD + IE R++A ++GE+  +KAF+ G+D++ +T ++ F+V   +V+K
Sbjct: 699 AFVAPKGSKIVSADYSQIELRLIAEISGEETMIKAFKEGQDIHASTASKLFDVPLNEVSK 758

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            QR+  K +   + Y   A A    A  TGL+      L+ +      +E       +M 
Sbjct: 759 TQRSQAKTVNFGIIYGQSAFAL---ADQTGLSRTDAKQLIDS-----YYETYPKLKAFMT 810

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           E   + A +  ++ T   R K+  +  +S    +     +        G A    K   +
Sbjct: 811 EQV-QVARKKGYVETIMGR-KRHLKDINSNNFVVRGHAERNAVNAPIQGSAADIIKLAMI 868

Query: 547 PLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            +    K +     ++L     LV+           T  +Q
Sbjct: 869 KIDSEIKAQGLKTKMLLQVHDELVFEVPNEEIEVATTLIKQ 909


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 118/684 (17%), Positives = 206/684 (30%), Gaps = 160/684 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA-- 60
           + ID ET S           Y  D  ++  +F  +          HD    P+ L +A  
Sbjct: 340 IAIDTETTSLN---------YM-DAKLVGISFAIEAGKAAYLPLGHDYLDAPEQLDQAEA 389

Query: 61  -------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111
                  LEN ++  V  N  ++   +    N+ I +       +L     N + +    
Sbjct: 390 LAKLKPLLENPELKKVGQNLKYD---ISIFANVGIKLQGIAFDTMLESYVFNSVATKHNM 446

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              ALK    K    +E+  +  K  T   +                 Y   D  +T  +
Sbjct: 447 DDLALKYLGHKNISFEEIAGKGVKQLTFNQI----------DLETAAPYAAEDADITLRL 496

Query: 172 FKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P   KE EL             +   I   G  +D  +    +  +     +L+Q
Sbjct: 497 HQHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLIDSMMLGQQSGELARTIDELEQ 556

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           +   +  G   +    ++L+   F + G  +   T      T + VL       P    +
Sbjct: 557 KAFEIA-GEKFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLPKII 615

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R  A                               +         P     +  R H
Sbjct: 616 LQHRSLA-------------------------------KLKSTYTDKLPLMVNAKSGRVH 644

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q         +S+P+   I         +R   IA EGKK++ AD + IE R++A 
Sbjct: 645 TSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGKKVLAADYSQIELRIMAH 704

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++  L AF  G+D++  T A  F+V   +VT +QR   K +   L Y   A     +
Sbjct: 705 LSQDEGLLTAFAAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVNFGLIYGMSAF---GL 761

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A    +        + T      ++      ++M+E   E A +  ++ T   R +    
Sbjct: 762 AKQLDIPRPEAQKYIDT-----YFKRYPGVLKYMEETRAE-AADLGYVSTLYGR-RLYLP 814

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
               R +       +A       G A    K+  + + +                     
Sbjct: 815 AIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIAH--------------------- 853

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                               T+G    + I+Q                        VHDE
Sbjct: 854 ---------------WIATETHGE--IDMIMQ------------------------VHDE 872

Query: 632 IVCETP-DTDEFNASMLYHLMTSN 654
           +V E   D  E   + +  LM   
Sbjct: 873 LVFEVDSDRAEEMQAKVCQLMADA 896


>gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
          Length = 931

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 127/706 (17%), Positives = 218/706 (30%), Gaps = 180/706 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    PR +
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPDMISPRDN 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A  G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621
                 G  R+ +N                     Q  + D++   M++           
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLK 874

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +++ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 SKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVGGGLLDVPLVAE 920


>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
 gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
          Length = 930

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 125/705 (17%), Positives = 220/705 (31%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N DI ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYDIALNGIAGDSMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  L  + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILVDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSIIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNISAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGIAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622
                 G  R+ +N                     Q  + D++   M++ ++        
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSYDLKS 874

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +++ VHDE+V E P+ + +     L  +M         +PL AE
Sbjct: 875 KLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 919


>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
 gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 194/619 (31%), Gaps = 141/619 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+ +   V  N  ++R +L    N DI +   +   +L     N +         
Sbjct: 405 LKPLLEDENAHKVGQNLKYDRGILA---NYDIELRGIVFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           +  L  +   +   G  +  A+ H  ++ + +   +L+Q+  
Sbjct: 512 MWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAPAVLHKHSEELTLRLNELEQKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G ++         P     +  R H   
Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINKKTGRVHTSY 659

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I         +R   IA E   +V AD + IE R++A ++ 
Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A  
Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLARQ 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   +A+ +     E +P                        
Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +   Q  E G                        +    GR L   D+ 
Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           ++         +        G   + I +A+   I  +G +   +    +++ VHDE+V 
Sbjct: 830 SSNGARRAGAERAAINAPMQGTAADIIKRAM---IAVDGWLQTEQPRVRMIMQVHDELVF 886

Query: 635 ETPDTD-EFNASMLYHLMT 652
           E    D E  +  ++ LM 
Sbjct: 887 EVHKDDLESVSKKIHQLME 905


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 125/702 (17%), Positives = 218/702 (31%), Gaps = 181/702 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           +D ET S  ++             ++  +F             H  P  P+ L       
Sbjct: 354 LDTETTSLDEMR----------AEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEVLA 403

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAV 112
             K  LE+     +  +  ++R V     N DI +  +   T++ +       P  L ++
Sbjct: 404 RLKPWLEDARYPKLGQHVKYDRHV---FANHDIDVRGYVHDTMLQSYVLEVHKPHGLASL 460

Query: 113 GEALKLSSQKMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            E           G+  I+    C    H+       P  +        Y   D   T +
Sbjct: 461 AERH--------TGRTGISYEDLCGKGAHQI------PFAQVPVDKAAAYSCEDSDQTLD 506

Query: 171 IFKRLEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +   L PL   + +L   + L+         I   G  +D       +  +     +L+ 
Sbjct: 507 VHLALWPLLQADDKLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRILQLET 566

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           E   +  G   +    ++L    F + G+ +   T T    T + VL    +  P   ++
Sbjct: 567 EAYEIA-GQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKL 625

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R                A                               LPR  R H
Sbjct: 626 LEHRSLTKLKGTYTDKLAQLA-------------------------------LPRTGRVH 654

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q +       ++DP+   I         VR   +A  G  +  AD + IE R++A 
Sbjct: 655 THYAQAVAVTGRLSSNDPNLQNIPIRTAEGRRVREAFVAPPGCVIASADYSQIELRIMAH 714

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G+   L AF  G D++  T A  F VA  QVT +QR   KV+   L Y   +     +
Sbjct: 715 ISGDHALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMSSF---GL 771

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   G+     A  +        ++      ++M E   + A    ++ T   R     R
Sbjct: 772 AKNLGIETKAAAAYID-----RYFQRYPGVKQYMDETKAQ-AKARGYVETVFGR-----R 820

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                ++                                            P+G     R
Sbjct: 821 LYLPEINS-------------------------------------------PNG----PR 833

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIV 625
             G  R+ +N                     Q  + D++   M      ++A K G  ++
Sbjct: 834 RAGAERAAINAPM------------------QGTAADLIKLAMVAVQKELDAHKPGIKMI 875

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P+ + ++    +  LM      A  +PL AE
Sbjct: 876 MQVHDELVFELPEGEVDWLRGHIPRLMAEVA--ALKVPLLAE 915


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 112/639 (17%), Positives = 211/639 (33%), Gaps = 130/639 (20%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
             +   L+  LE++D   V  N+ F+R + K      I +   +   +LA     P    
Sbjct: 428 EQVLDSLRTILESSDYPKVFQNTKFDRLIFKHQA---INLDGVVFDTMLASYVLHPE--- 481

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETH-ECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                    S K+ E  E        + + E    + +           EYC  D   T 
Sbjct: 482 --------KSHKLSELCEQYLEGITCQNYDELGISKKQTIADLDIEKVAEYCGMDAYGTF 533

Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L+            L   EQ L  +   + D G  +D      L++ ++ E + L
Sbjct: 534 LLVEPLKNELQQVPTLEQLLLEVEQPLEAVLSIMEDTGILIDTEYLGKLSKELEQELSSL 593

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           +++          +    ++L   LF +  L+ +   +T                     
Sbjct: 594 EKKAYD-AAEEKFNLGSPKQLGEILFEKLELNRKKSRKT--------------------- 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                 ++     +  +E +  D   +   L++   S+         P     +  R H 
Sbjct: 632 ------KTGYSTDHATLEKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVNKKTKRIHT 685

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +Q +T      +S+P+   I      S  +R   I  +   LV AD + IE R+LA +
Sbjct: 686 NFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYSQIELRILAHL 745

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + E   L A++  ED++  T    F     ++T  +R +GK +   + Y  G+   Q+ A
Sbjct: 746 SQESVLLNAYQNAEDVHTVTAKLLF--EKEEITPQERNLGKTINFGVIYGMGS---QRFA 800

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++       +  N   + +     +     EN  + AI + ++ T   R +     
Sbjct: 801 REAGVSATEGKEFI--NKYRQRYAKVFEYL----ENMKKEAIANGYVTTILGRRR----- 849

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                                                Y     +NL       R    + 
Sbjct: 850 -------------------------------------YFNFFDDNLYRF----RGHDPQT 868

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTV 628
           +  N+  +N    QL R            +Q  S DI+   M+   +       +++L V
Sbjct: 869 IDLNKLNINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILNYYQANLLLQV 922

Query: 629 HDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P+ +    +  +   M +       +PL  E
Sbjct: 923 HDELVFEIPEKEWEELNHKIKETMENAVK--LTIPLVVE 959


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 199/621 (32%), Gaps = 145/621 (23%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGE 114
            LK  LEN  +  V  N  ++ T+     N  I ++     T++ +              
Sbjct: 429 QLKPLLENPSIQKVGQNIKYDLTI---FANHHIQLNGVCFDTMLQSYVLDSTGRHNMGAL 485

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    ++ E + +  +  K  T + +          A     EY   D  +T ++ + 
Sbjct: 486 SERYLGHQVIEFESIAGKGKKQVTFDKI----------AIAQATEYAAEDADITMKLHQV 535

Query: 175 L------EP-----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L       P      +  E  L  +   +   G  +D       ++ +    T L+Q++ 
Sbjct: 536 LWQELQQSPSLVKVFNDIELPLVKVLSKMERNGVLIDSQALLKQSEKIARRLTALEQQVY 595

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G   +    ++L+  LF +  L +   T            +   Q   +    +  
Sbjct: 596 QEA-GAEFNLASTKQLQEILFTKLALPIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLME 654

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G ++         P     +  R H    Q +
Sbjct: 655 HR--------------------------GLAKLKSTYTDKLPSMVNKKTGRVHTSYHQAV 688

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I        C+R   IA +G K++ AD + IE R++A ++ +   
Sbjct: 689 TATGRLSSSDPNLQNIPIKNEEGHCIRQAFIARKGYKIIAADYSQIELRIMAHLSQDNGL 748

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++ +T A  F +   +VT +QR   K +   L Y   +     +++  G++
Sbjct: 749 IMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIS 805

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                             +A+ +     + +P             +      R+K     
Sbjct: 806 R----------------ANAQKYMDLYFQRYP-----------GVQTFMVDIREKAK--- 835

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNR 577
                  Q + +T+   +                       L LP   S    R  G  R
Sbjct: 836 ------EQGYVETLFGRR-----------------------LYLPEINSSNAIRRKGAER 866

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIV 633
             +N                     Q  + DI+   M+       K    +++ VHDE+V
Sbjct: 867 VAINAPM------------------QGTAADIIKLAMIAIHNEIKKNDIQMIMQVHDELV 908

Query: 634 CETPDT--DEFNASMLYHLMT 652
            E  +   DE++A ++  LM 
Sbjct: 909 FEVKENKVDEYSA-LIKSLME 928


>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002]
 gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002]
          Length = 887

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 116/698 (16%), Positives = 200/698 (28%), Gaps = 170/698 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD-PVMPQVLKEA- 60
            +D ET S             + +   L    F   +         H    +P+ L  A 
Sbjct: 313 SLDTETTS------------LDQMEARLVGISFSVTEGEAAYLPLAHHYAGVPEQLDLAA 360

Query: 61  --------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                   LEN     +  N  ++R VL    N  I +       +LA     + L   +
Sbjct: 361 TLARLKPWLENPARKKLGQNLKYDRHVLA---NHGIALAGVADDTLLASYVIESHLTHNM 417

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT- 168
                   L+ + + E        C     +               +   Y   D  +T 
Sbjct: 418 DD------LARRHLGESTVSYEEICGKGAKQIG------FAEVDIAVASNYAAEDADITL 465

Query: 169 ---REIFKRLEPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              R +  +LE   +      E  +  +   +   G  +D       +  +  +  +L+Q
Sbjct: 466 RLNRALAGKLEGRLASVYRDIELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLEQ 525

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAI 274
           E      G   +    ++L+  LF + G+  + + +T      T + VL       P   
Sbjct: 526 EAYQQA-GQPFNLNSPKQLQEILFGKLGIDTKGVKKTPSGGFSTDESVLEQLALDHPLPK 584

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +                                Q+ G ++         P    P   R
Sbjct: 585 LIL-------------------------------QYRGLAKLKSTYTDKLPSLIRPDTGR 613

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q +       +SDP+   I         VR   IA  G ++V AD + IE R++
Sbjct: 614 VHTNYAQAVAITGRLSSSDPNLQNIPVRTAEGRRVREAFIAPPGHRIVSADYSQIELRIM 673

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ +   L AF +GED++ TT A  F V   QVT +QR   K +   L Y   A    
Sbjct: 674 AHLSDDANMLAAFASGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLIYGMSAF--- 730

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A+   +  N     +        +    ++ +  +E   E    +   G         
Sbjct: 731 GLAAQLDIERNAAQQYID--RYFMRFPGVADYMQRTREMAREQGYVETVFGRRL--YLPE 786

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
            R  +       +   +A       G A    K   +                       
Sbjct: 787 IRASNP---GRRSGAERAAINAPMQGTAADLIKLAMI----------------------- 820

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                          ++       G KL                           ++ VH
Sbjct: 821 -------------AVQRWLVAEGLGSKL---------------------------IMQVH 840

Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           DE+V E P+ +       L  +M         +PL AE
Sbjct: 841 DELVLEVPEAELARVKERLPQIMAGVAE--LKVPLLAE 876


>gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
          Length = 931

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 126/706 (17%), Positives = 218/706 (30%), Gaps = 180/706 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDSMLASYIIESHLGHGL 459

Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + G  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621
                 G  R+ +N                     Q  + D++   M++           
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLK 874

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +++ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 SKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVGGGLLDVPLVAE 920


>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
          Length = 930

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 124/706 (17%), Positives = 218/706 (30%), Gaps = 179/706 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57
            T+ ID ET + +D         A +  ++  +  F           H     P+ L   
Sbjct: 352 NTIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 58  ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSA 108
                 K  L N  +  +  N  +++ V     N  I ++      +LA     + L   
Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHG 458

Query: 109 LKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L  + E  L L +   E         C     +            A     EY   D   
Sbjct: 459 LDELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADF 505

Query: 168 TREIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
              +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL
Sbjct: 506 ALRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQ 272
           +Q+  +       +    ++L+  LF + G+  + L +T      T + VL       P 
Sbjct: 566 EQQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +  NR  A                               +         P    P+ 
Sbjct: 625 PKIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKD 653

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q +       +++P+   I         VR    A +G  +V AD + IE R
Sbjct: 654 GRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELR 713

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G   
Sbjct: 714 IMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY- 772

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +A + G++  +  + +                                         
Sbjct: 773 --GLAKSLGIDNLSAKNFID---------------------------------------- 790

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
               +  +R   +   + +  EQ    G       RR               L LP  R+
Sbjct: 791 ----RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRN 831

Query: 568 LVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----G 621
                  G  R+ +N                     Q  + D++   M++         G
Sbjct: 832 KNANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIG 873

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 874 SKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/642 (16%), Positives = 197/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 468 LKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMNPLS 524

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++ H+M +    A  L  PL+ + 
Sbjct: 943 HDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDA 984


>gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
 gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
          Length = 978

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/666 (17%), Positives = 225/666 (33%), Gaps = 140/666 (21%)

Query: 33  FAFGFDDHPVELWDCVH--DPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85
             +G     V      H     + + L     +  LE+ D      N+ F+R VLK C  
Sbjct: 410 CCWGMQPDEVAYIPLGHKTGENLHKDLVLEGLRPILESADYPKALQNAKFDRLVLK-CQG 468

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++     +   +LA     P +      +  L    M+ G+  +    K  ++  L  +
Sbjct: 469 INL--AGVVFDPMLASYILNPDS------SHNL----MDLGQRYLGLIAK--SYLDLVPK 514

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTIND 194
            K           +YC  D   T  +  +L             L   EQ L  +   +  
Sbjct: 515 GKTIADIDIPSVADYCGMDAYSTFGLVPKLREELDKIPTLSKLLVEVEQPLEAVLAQMEY 574

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  ++ A    L+Q ++ E  +L +E   +  G   +    ++L   LF + GL  +  
Sbjct: 575 TGVRINSAYLKELSQHLETELARLKEEATKIA-GENFNLGSPKQLSQILFEKLGLSTKHS 633

Query: 255 TE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
            +  T      ++ +KL                             +  G +   +++  
Sbjct: 634 RKIQTGFSTDAATLEKLQED--------------------------DKSGFVEAIIEYRT 667

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
            S+         P    P   R H + +Q  T      +S+P+   I      S  +R  
Sbjct: 668 LSKLKSTYVDALPALVRPDTQRVHTDFNQAATSTGRLSSSNPNLQNIPIRTAFSRQIRKA 727

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +   G  +V AD + IE R+LA ++ E   ++A++  ED++  T    F     ++T +
Sbjct: 728 FLPEAGWLMVAADYSQIELRILAHLSQEPILVQAYQQNEDVHTVTGRLVF--EKEKITSE 785

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           +R I K +   + Y  G+    + + +TG++ N     +K                    
Sbjct: 786 ERGIAKTINFGVIYGMGS---LRFSRSTGIDKNIANEFIK-------------------- 822

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR--- 544
                                 + +++ +V     ++ +     +   + I+ R+R    
Sbjct: 823 ---------------------RFNERYPKVFAYLEQVKKEAI-ALGYVETILGRRRYFDF 860

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
               +   K  N   + L   ++L   D G  RS  N                    +Q 
Sbjct: 861 TNNSLRRLKGSNPEDIDLSKLKNLGPYDAGLLRSAANAP------------------IQG 902

Query: 605 VSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAK 659
            + DI+   M+   +        ++L VHDE+V E P  + E     +  +M +    + 
Sbjct: 903 SNADIIKIAMVRLHEVLKNYQARLLLQVHDELVFEIPPDEWEELQPQIKSVMENAVQLSV 962

Query: 660 GLPLKA 665
            L ++A
Sbjct: 963 PLLVEA 968


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTISSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 123/692 (17%), Positives = 218/692 (31%), Gaps = 144/692 (20%)

Query: 9   ETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVH--DPVMPQV-----LKE 59
           ET    D    G+     D  +  I   +G +          H     + Q      L+ 
Sbjct: 385 ETPVAWDTETSGLEP--RDAALVGIGCCWGTEADASAYIPLAHTKGENLSQDIVLTALRP 442

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            LE+ D      N+ F+R V        I +   +   +LA     P        +  L 
Sbjct: 443 ILESADYPKTFQNAKFDRLV---FLVQGINLTGVVFDPMLASYVLNPD------TSHNL- 492

Query: 120 SQKMEEGKELIARFCKGETHEC--LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                   +L  R+          L  + K            YC   V  T ++  +L  
Sbjct: 493 -------TDLTQRYLGLTIQNYVDLVPKGKTIADINISAVANYCCLQVYATFQLVAKLRE 545

Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                      L   EQ L  +  T+   G  +D A  H L+Q ++++  KL ++   L 
Sbjct: 546 ELAKTPNLDKLLREVEQPLESVLATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQATELA 605

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            G   +    ++L   LF + GL  +     +T      ++ +KL               
Sbjct: 606 -GEKFNLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQE------------- 651

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                        ++  G +    ++   S+         P    P   R H + +Q  T
Sbjct: 652 -------------VDETGFVNAITEYRTLSKLKSTYVDALPALVRPDTQRVHTDFNQTAT 698

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S+P+   I      S  +R   +   G  +  AD + IE R+LA ++ E   +
Sbjct: 699 STGRLSSSNPNLQNIPIRTAFSRQIRKAFLPKSGWLMAAADYSQIELRILAHLSQEPLLV 758

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A++  ED++  T    F      +  D+R I K +   + Y  G+    K + +TG++ 
Sbjct: 759 QAYQQNEDIHTVTAKLVF--EKDDINSDERRIAKTINFGVIYGMGS---LKFSRSTGIDK 813

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           N     +K       + +         E   + AI   ++ T   R +            
Sbjct: 814 NVANEFIK------RFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFNFDS------ 861

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                        +   K  N   + L   ++L  +D G  RS 
Sbjct: 862 ---------------------------TSLLNLKGSNPEDIDLSKLKNLGAKDAGLLRSA 894

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEIVCE 635
            N                    +Q  S DI+   M+       K    ++L VHDE+V E
Sbjct: 895 ANAP------------------IQGSSADIIKIAMVQIHEVLKKYQARLLLQVHDELVFE 936

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666
            P  +       +  +M +       +PL  +
Sbjct: 937 VPPQEWAELQPQIKSVMENAVK--LSVPLVVD 966


>gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
          Length = 908

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 124/706 (17%), Positives = 218/706 (30%), Gaps = 179/706 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57
            T+ ID ET + +D         A +  ++  +  F           H     P+ L   
Sbjct: 330 NTIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379

Query: 58  ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSA 108
                 K  L N  +  +  N  +++ V     N  I ++      +LA     + L   
Sbjct: 380 DVLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHG 436

Query: 109 LKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L  + E  L L +   E         C     +            A     EY   D   
Sbjct: 437 LDELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADF 483

Query: 168 TREIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
              +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL
Sbjct: 484 ALRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 543

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQ 272
           +Q+  +       +    ++L+  LF + G+  + L +T      T + VL       P 
Sbjct: 544 EQQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 602

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +  NR  A                               +         P    P+ 
Sbjct: 603 PKIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKD 631

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q +       +++P+   I         VR    A +G  +V AD + IE R
Sbjct: 632 GRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELR 691

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G   
Sbjct: 692 IMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY- 750

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +A + G++  +  + +                                         
Sbjct: 751 --GLAKSLGIDNLSAKNFID---------------------------------------- 768

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
               +  +R   +   + +  EQ    G       RR               L LP  R+
Sbjct: 769 ----RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRN 809

Query: 568 LVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----G 621
                  G  R+ +N                     Q  + D++   M++         G
Sbjct: 810 KNANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIG 851

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 852 SKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 897


>gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012]
 gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012]
 gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74]
          Length = 449

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 117/341 (34%), Positives = 168/341 (49%), Gaps = 17/341 (4%)

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHE 140
              L  P+ RW  T+V A ++GLP +L  + E L +   K   +EGK LI  FCK     
Sbjct: 1   MPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKN 60

Query: 141 CLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYLDQTINDRGY 197
               R     H E WR F  Y   D+   RE++ RL   + +  E  LW+ DQ INDRG 
Sbjct: 61  SKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGV 120

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           C+D+ LA    + VD E+ +L +  + +T G V ++   + L   +    G+ L D+  +
Sbjct: 121 CMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRS 180

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T +R +++   L     ++   R++AS ++  K   L++ ++ DGRLRGTLQF GASRTG
Sbjct: 181 TLERRIAN-PDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTG 239

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS----EG 373
           RW+G +F PQNLPRPS   E++D+ I   P +       LQI S  V +    S      
Sbjct: 240 RWAGRLFQPQNLPRPSLKQEQIDEGIEA-PNAAAKTLKCLQIASGAVYTDDAGSWSELHD 298

Query: 374 KKLVVADLAGIEARVLAWMAGEQW------KLKAFETGEDL 408
            KL   D    EA     +    W       LKAF  G  L
Sbjct: 299 TKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 339


>gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
          Length = 930

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 124/705 (17%), Positives = 218/705 (30%), Gaps = 179/705 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  L N  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           Q+  +       +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622
                 G  R+ +N                     Q  + D++   M++         G 
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 874

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +V+ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/628 (16%), Positives = 209/628 (33%), Gaps = 132/628 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LEN  V  +  N  ++  V+K     +I +  +  T++L+       AL+A     
Sbjct: 442 LKPILENQAVLKIGQNIKYDWLVMKQH---NIVMCSFDDTMLLS------YALEAGISTH 492

Query: 117 KLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +        G + I+   K  TH     +     R   +    Y   D  +T  +++ L
Sbjct: 493 GMDVLSERWLGHKPISY--KDLTHS--RRKIVSFARVDLKQATLYAAEDADITLRLWQVL 548

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P    +          + L  +   + +RG  VD  +   L+  +      L +E+  L
Sbjct: 549 KPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQTVLNLGEEIYQL 608

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF + GL     T++      +   +       +         
Sbjct: 609 -VGEKFNIASPKQLGDILFGKMGLPGGTKTKSGQWSTSAQTLEELAAEGHILP------- 660

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  + +   ++         P   LP   R H       T 
Sbjct: 661 -------------------RKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATTL 701

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +S+P+   I         +R+  +AS+G  L+ AD + IE R+LA +A      +
Sbjct: 702 TGRLSSSEPNLQNIPVRTAEGRKIRAAFVASKGHLLLSADYSQIELRILAHVADITALKE 761

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T ++ F VA   +T + R   K +   + Y         +AS  G++  
Sbjct: 762 AFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPF---GLASQLGISRK 818

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +  +                                         + + ++   + + 
Sbjct: 819 EASDYI-----------------------------------------QLYFERFPGIEDY 837

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                            I AR    V  ++              GR + Y ++  ++  +
Sbjct: 838 ------------MERTKIFARHYGYVETIF--------------GRRIHYPEIKTDKPQI 871

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
            +   +        G   + I +A+   I  E  +   +    ++L VHDE++ E P ++
Sbjct: 872 RSFNERAAINAPIQGSAADIIRRAM---IQMENALEKERLSAKMLLQVHDELIFEVPKSE 928

Query: 641 EFNASM-LYHLM--TSNPSWAKGLPLKA 665
               ++ +  +M   + P+ +  +PL+ 
Sbjct: 929 SKKTTILIKKVMENATMPALSLSVPLEV 956


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/626 (17%), Positives = 189/626 (30%), Gaps = 108/626 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH-----DPVMPQ--- 55
           ID ET S                   +  +     P         H        +P+   
Sbjct: 318 IDLETTSLNPR------------EARVVGYAVSCRPHEARYIPVGHRYLGAPEQLPEALV 365

Query: 56  --VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
             +L   L++     +  N  ++  VL+        +    C  +LA     P+  +   
Sbjct: 366 LEILGPLLKDPARRKIGQNLKYDYQVLRMA---GFEMEGIWCDTMLAAYLVNPARNSQGL 422

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              AL+    +M    E+                            G Y   D   T  +
Sbjct: 423 DALALEYLDHRMISYAEVA----------GSGKCELNFSEVDLDRAGPYSCEDADATYLL 472

Query: 172 FKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P          L   E  L  +   +   G  +DV L   L+     +  +L+ +
Sbjct: 473 HEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSAGFGKQLIELEAQ 532

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276
           +     G   +    ++L   LF   GL +   T+     +T    L    +    A   
Sbjct: 533 IHEHCGG-PFNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVA--- 588

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                       R  LQ+   S+         P    P   R H
Sbjct: 589 ----------------------------RLLLQYRSISKLKSTYTDALPKLVDPATGRVH 620

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
              +Q +T      +SDP+   I         +R   IA  G  ++ AD + IE RVLA 
Sbjct: 621 TSYNQAVTSTGRLSSSDPNLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAH 680

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++   +AF  GED++  T +  F + P  VT + R   KV+   + Y  GA +    
Sbjct: 681 LSGDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSL--- 737

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER--VKKA 509
           A   G+        + +           +  R   ++    A    F+ T   R      
Sbjct: 738 AKELGVTPKQAKAFIDSYFERH------SGARSFLDSCIREAEVCGFVTTIMGRRLCIPE 791

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
              K+  V         A    I+   A I +      +  M++++    L++     LV
Sbjct: 792 IASKNGNVRAF--AQRNAVNYPIQGSAADIIKAAMLRVIRRMQQERVASRLIMQVHDELV 849

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGG 595
           +      R  +     +L R    G 
Sbjct: 850 FEVPEAERDLME----ELVRTEMEGA 871


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/642 (16%), Positives = 197/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMNPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 818 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 856

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 857 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++ H+M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDA 968


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/642 (17%), Positives = 193/642 (30%), Gaps = 152/642 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            VLK  LE+  V  +A N  ++  V+     +DI       T++L+ +         + E
Sbjct: 468 DVLKPMLEDRSVLKIAQNLKYDWLVMTRY-GIDITPFD--DTMLLSYTVDAGKGGNGMDE 524

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              LS + ++         C        +D+       A      Y   D  VT  ++  
Sbjct: 525 ---LSERWLDHKPIPFKEICGSGKSMITFDK------VAIDKATAYAAEDADVTLRLWLI 575

Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L+P  + E+           +  +   +  RG  VD  +   L+          + E+  
Sbjct: 576 LKPRLASERMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGEFAQGMAGKESEIYE 635

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF + GL     T+T    T  +VL            ++ + 
Sbjct: 636 LA-GENFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDLAAEGHELPSRIVSW 694

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+         P    P   R H   
Sbjct: 695 RQL-------------------------------SKLKSTYTDALPGYINPETGRVHTSY 723

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
               T      +S+P+   I         +R   IA +G KL+ AD + IE RVLA MA 
Sbjct: 724 ALAATTTGRLSSSEPNLQNIPVRTEEGRKIRKAFIAEKGHKLISADYSQIELRVLAHMAD 783

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                KAF+ G D++  T +  F      +    R   K +   + Y   A     +A+ 
Sbjct: 784 IPQLKKAFDDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINFGIIYGISAF---GLANQ 840

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +                                         K + ++ 
Sbjct: 841 LGISRGEAGDYI-----------------------------------------KTYFERF 859

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             + +    + +           I  RK     +              P+ R+       
Sbjct: 860 PGIKDYMEAIKKQV-HANGYVTTIFGRKAHYPEVNTKN----------PNMRAFY----- 903

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
             R+ +N                    +Q  + DIL   M+         K    ++L V
Sbjct: 904 -ERAAINAP------------------IQGSAADILRRAMVRMENRLEGSKLDAQMLLQV 944

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E PD   E    ++  +M +    A  L  PL+ + 
Sbjct: 945 HDELIFEVPDAQVETTIPVIKDVMENACDPALKLSVPLQVDA 986


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 113/688 (16%), Positives = 203/688 (29%), Gaps = 152/688 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------- 57
           +D ET S   +             ++  +F  +          HD    PQ L       
Sbjct: 337 LDTETTSLDPMQ----------AKLVGMSFSVEAGKAAYVPLAHDYTGAPQQLDFTAALR 386

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +  LE+  +  +  N  +++ VL     + +       TL+ +              A
Sbjct: 387 QLRPMLEDASIPKLGQNLKYDKHVLANH-GIALN-GITHDTLLQSYVLESHRTHGMDDLA 444

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           ++    +    +++  +  K      +       +              +    E   +L
Sbjct: 445 MRHLGVQTVTYEQIAGKGAKQVPFSQISIETAAEYAAEDADITLQLHQALYPQIEADDKL 504

Query: 176 EPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             +    E  L  +  TI   G  +D A+    +  +  +   L+Q+   +  G   +  
Sbjct: 505 AFVYREIEMPLLDILYTIERNGVLIDQAMLQAQSHEIGQKLIDLEQQAYDIA-GQPFNLG 563

Query: 235 CLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             ++L+  LF + G+           +T + VL       P    +              
Sbjct: 564 SPKQLQEILFGKLGIKPLKKTPSGAPSTDEDVLQELALDYPLPKVLLE------------ 611

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                              + G ++         P    P   R H    Q +       
Sbjct: 612 -------------------YRGLAKLKSTYTDKLPRMINPATGRVHTSYSQAVAITGRLA 652

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +SDP+   I         +R   IA  G  ++ AD + IE R++A ++ ++  L AF  G
Sbjct: 653 SSDPNLQNIPVRTAEGRRIREAFIAPPGASIISADYSQIELRIMAHLSQDEGLLSAFAKG 712

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T A  F V   +V+ +QR   KV+   L Y   A     +A    +      + 
Sbjct: 713 EDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMSAF---GLAQNLNIERGAAQNY 769

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +    A           R   +N    A E                     V   +    
Sbjct: 770 IDRYFARYP------GVREYMQNTRMLAKE------------------QGYVETFF---- 801

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                           +R  VP +             P+G     R  G  R+ +N    
Sbjct: 802 ---------------GRRLWVPEINS-----------PNGM----RRAGAERAAINAPM- 830

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639
                            Q  + D++   M+   +          I++ VHDE+V E PD 
Sbjct: 831 -----------------QGTAADLIKLAMIAVDRWLREHNLNSKIIMQVHDELVLEVPDA 873

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E     L  LM         +PL AE
Sbjct: 874 ELELVQQTLPQLMQGVAK--LDVPLLAE 899


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/675 (17%), Positives = 208/675 (30%), Gaps = 158/675 (23%)

Query: 28  VCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFER 77
             ++ F+   +          HD    P+ L         K  LE+     V  +  ++ 
Sbjct: 364 AELVGFSVSVEAGKAAYIPVAHDYEGAPEQLDRDWVLEQIKPVLEDASQLKVGQHLKYDA 423

Query: 78  TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
            VL    N DI +       +L     N   +       A K  S K    +E+  +  K
Sbjct: 424 NVLA---NYDIELKGIEFDTMLESYIFNSTANRHDMDSLAKKFLSHKSVSFEEIAGKGAK 480

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----REIFKRLEPLSS-------KEQE 184
            +T   +                 Y   D  +T    + I+ +LE            E  
Sbjct: 481 QKTFNQI----------ELEQAAFYAAEDADITFRLHQAIWAKLEKTPELVSIFKEIELP 530

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  +D  L H  +  +     +L+ +   +  G   +    ++L+  LF
Sbjct: 531 LVPVLAKMEQTGALIDPDLLHEQSSEIATRLEELEIKAHEMA-GQAFNLSSPKQLQEILF 589

Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
           ++  L +   T               P   ++  +                         
Sbjct: 590 VKLELPILKKTPKGQPSTAE------PILQELALDYELP--------------------- 622

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
           R  ++    S+         P   + +  R H    Q +T      ++DP+   I     
Sbjct: 623 RIIMEHRSLSKLKSTYTDKLPEM-IQKTGRIHTSYHQAVTATGRLSSTDPNLQNIPIRTA 681

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R   IA EG KL+ AD + IE R+++ ++ +   L+AF   +D++  T A  F V
Sbjct: 682 EGRRIRQAFIAPEGYKLIAADYSQIELRIMSHLSQDPGLLEAFANNKDVHKATAAEVFEV 741

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           A  +VT +QR   K +   L Y   A     +A   G+                   +A+
Sbjct: 742 ALDEVTGEQRRRAKAINFGLIYGMSAF---GLAKQLGIGR----------------PEAQ 782

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            + +   E +P                                       +T       +
Sbjct: 783 KYIQRYFERYP-------------------------------------GVRTYMENTREM 805

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
           AR++  V  ++              GR L   D+       N   RQ             
Sbjct: 806 AREKGYVETLF--------------GRRLYLPDIK----ASNAMMRQAAER-----TAIN 842

Query: 600 NIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
             +Q  + DI+   M+        T     ++L VHDE++ E  ++D       +  +M 
Sbjct: 843 APMQGTAADIIKRAMIEMHAWLKDTDLDIKMILQVHDELIFEVKESDLSAAQEKILDIME 902

Query: 653 SNPSWAKGLPLKAEG 667
           +    A  +PL  E 
Sbjct: 903 NTS--AIDVPLLVEA 915


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/607 (16%), Positives = 207/607 (34%), Gaps = 86/607 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVA 70
           D    G+        ++  AF ++           +    Q + E L    E T++  + 
Sbjct: 381 DTETTGLNP--LTAELVGIAFSWEAGKGFYIAFPKEKEAAQEIIELLRPFFEATEIEKIG 438

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VL+     DI +   +   +LA     P         A    +       EL
Sbjct: 439 QNLKYDLKVLRKY---DIVVKGQLFDTMLAHYLINPDMRHNMDILAETYLNYTPVSITEL 495

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I +  K +       R+ P   +      EY   D  +T ++ +               +
Sbjct: 496 IGKKGKNQKS----MRDVPVADQ-----TEYAVEDADITLQLKEHFSKELGEANTQKLFT 546

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +D    ++L+  ++ +   L++ + +   G   +    ++L
Sbjct: 547 DIEVPLLRVLAAMEAEGINLDKTFLNSLSDDLESDIASLEKNIYAEA-GEEFNIASPKQL 605

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T+T    T + VLS+  K       V   R              
Sbjct: 606 GEILFGKMKLVEKPKKTKTGQFSTAEDVLSALAKDHKIIADVLEYR-------------- 651

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                            G ++         P Q  P   R H +  Q +       +++P
Sbjct: 652 -----------------GLAKLKSTYVDALPLQVEPATQRVHTDYMQTVAATGRLSSNNP 694

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   +   E   L+ AD + IE R++A ++ E+  ++AF+ GED+
Sbjct: 695 NLQNIPIRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSQEETMMEAFKNGEDI 754

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T ++ F+V   +VT++QR+  K +   + Y   A     +++ T L+      L+  
Sbjct: 755 HASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTSLSRGEAKELIDA 811

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               E +   +++         ++   +  +G      ++     +   + +     +  
Sbjct: 812 YY--ETYPKLKHYMSEQVNFARDNGYVETIMGR-----RRYLNAINGSNAIVRGAAERNA 864

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                 G A    K   +  +Y K ++ N    ++L     LV+ DV  +      T  +
Sbjct: 865 VNAPIQGSAADIIKIAMI-NIYRKLEEGNYKTKMLLQVHDELVF-DVHKDELDEMKTMIK 922

Query: 587 LTREYTY 593
              E  Y
Sbjct: 923 HEMENAY 929


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/642 (17%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  V  +A N  ++  +++      I    +  T++++             P +
Sbjct: 459 LKTVLEDASVLKIAQNMKYDWLIMRRY---GINTVSFDDTMLISYVLDAGTGSHGMDPLS 515

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 516 ERWLGHTPIAYKDVAGSGKSSV-----------------TFDMVDIDRATAYAAEDADVT 558

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 559 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 618

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+  L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 619 EDEIYELA-GERFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 677

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P   
Sbjct: 678 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPATR 706

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 707 RVHTCYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 766

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 767 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 824

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 825 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 863

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 864 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQIRAF 891

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +   K    ++L V
Sbjct: 892 ------NERAAINAPIQ---------GSAADIIRRAMIR---MEDALAKEKLAARMLLQV 933

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E   S++ H+M +    A  L  PL  + 
Sbjct: 934 HDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLAVPLHVDA 975


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/705 (16%), Positives = 214/705 (30%), Gaps = 178/705 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDP--VMPQVL 57
             L +D ET S   +             ++  +F  ++      +     +    +  + 
Sbjct: 348 KILSLDTETTSTNAIE----------AELVGLSFAVEERKAFYVVIPANREEALKIVAIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           K   E+ ++  V  N  ++  VL+      + +   +   ++A     P     +  + E
Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVLRHY---GVEVAGPMFDTMIAHYLLQPELRHNMDYMAE 454

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172
             L   +  +E   ELI              RN+ N R+       EY   D  +T  + 
Sbjct: 455 VYLGYRTVHIE---ELI----------GPRGRNQKNMRDLSPTDIYEYACEDADITLRLK 501

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             LEP   +          E  L  +   +   G C+D    H  +++ +   T ++Q +
Sbjct: 502 NVLEPKLDEAGVARLFRDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTAIEQHI 561

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
             L  G   +     ++   LF +   +     T+T    T + VL   +  +P   ++ 
Sbjct: 562 YELA-GEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEIL 620

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G  +         P    PR  R H 
Sbjct: 621 -------------------------------NYRGLKKLLSTYVDALPKLINPRTGRIHT 649

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +Q +T      +SDP+   I         +R C I   G     AD + IE R++A +
Sbjct: 650 SFNQTVTATGRLSSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHL 709

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  ++AF  G D++  T AR ++    +VT  +R   K     + Y         +A
Sbjct: 710 SEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTY---GLA 766

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               ++      L+                                              
Sbjct: 767 QRMDISNGEARDLIDGYFL----------------------------------------- 785

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              RV      + QA E   + G A     RR                 LP   S     
Sbjct: 786 TFPRVEA---YMEQAKETARKQGYAETLFHRRRY---------------LPDINSHNATV 827

Query: 573 VGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625
            G   R+ +N                    +Q    DI+   M+   +          ++
Sbjct: 828 RGFAERNAINAP------------------IQGSEADIIKVAMVRIHRRFKAEGIRSKMI 869

Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
           L VHDE+     P+  E    ++   M    ++   +PL A+ G+
Sbjct: 870 LQVHDELNFSVFPEEKEQVERIVVEEMQG--AYKLRVPLVADAGW 912


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 941

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/615 (15%), Positives = 190/615 (30%), Gaps = 102/615 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L ID ET S   +             ++  +F   ++         +      +    
Sbjct: 369 KILSIDTETTSAEPME----------AELVGMSFSDTENQAYYVPVPAEREEALKIVNEF 418

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN     V  N  ++  VL+   N  + +   +   ++A     P     +  + E
Sbjct: 419 RPLYENETSMKVGQNIKYDILVLQ---NYGMEVKGELFDTMIAHYVLQPELRHNMDYLAE 475

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E                   R+ P          +Y   D  VT ++  
Sbjct: 476 IYLHYQTIHIDE-------LIGPRGKNQKNMRDLPP-----EEVYKYACEDADVTLKLKN 523

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    K          E  L  +   +   G  +D       ++   V   ++++E+ 
Sbjct: 524 VLEEELKKQGVEHLFYEIEMPLVRVLANLESNGVRIDTEALKQTSEHFTVRLQEIEKEIY 583

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-------QRVLSSNKKLTPQAIQV 276
            L      +    +++   LF +  L + D  + T        + VL S +       ++
Sbjct: 584 ELA-EETFNIASPKQVGEILFDK--LKITDKAKKTKTGQYVTSEEVLESLRNKHEIIGKI 640

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                            + G  +         P    PR  R H
Sbjct: 641 LE-------------------------------YRGLKKLLGTYIDALPLLINPRTGRIH 669

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
              +Q +T      +S+P+   I         +R   I  +G +   AD + IE R++A 
Sbjct: 670 TSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAH 729

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++  + AF +G D++  T A+ + V    VT D R   K     + Y         +
Sbjct: 730 LSEDKNMIDAFLSGYDIHAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYGISIF---GL 786

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A    ++      L+        + +     R   +   + A E  ++ T   R K+   
Sbjct: 787 AERMNVDRKEAKELIDG------YFETYPQVREYMDKSIQIAREQGYVETIFHR-KRFLP 839

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLV 569
             +SR + +     +        G A    K   +  +Y +   NNL   ++L     L 
Sbjct: 840 DINSRNATVRGYAERNAINAPIQGSAADIIK-VAMARIYKRFQSNNLKAKMILQVHDELN 898

Query: 570 YRDVGNNRSYLNTTT 584
           +      + ++    
Sbjct: 899 FSVPEAEKEFVQQIV 913


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/679 (15%), Positives = 198/679 (29%), Gaps = 149/679 (21%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70
           D    G+  +  D+  + F F   +          D      + +  K   EN  +  + 
Sbjct: 382 DTETTGLDMFTSDLVGMSFCFA--EGEAYYVSLPEDKTESKEVLREFKAFFENDRIEKIG 439

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  F+  +L   +   I +   +   ++A     P         A    + +    ++L
Sbjct: 440 QNMKFDLLML---WQYGIELKGKLFDTMIAHYLVQPELRHGMDYLAEIYLNYRTIHFEDL 496

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---------- 179
           +    K +      D NK           +Y   D  VT  + + LE             
Sbjct: 497 VGAKGKNQADIRTVDINK---------LCDYAAEDADVTFRLKQILEKELKADALENLFY 547

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  T+   G  +D       + I+  E  KL++E+  L  G   +     ++
Sbjct: 548 EIEMPLMQVLATMEHTGVRIDSEALRQSSVILTDEMLKLEKEIHQLA-GYEFNVSSPMQV 606

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF    L L+D  + T     S+++ +                     L  L     
Sbjct: 607 GEILFDR--LKLDDKAKKTKTGQYSTSEDI---------------------LEKLQSKHP 643

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
             G++   L + G  +         P    P   + H   +Q +       +++P+   I
Sbjct: 644 IIGKI---LDYRGLKKLLSTYIDALPQLISPITGKVHTSYNQTVAATGRLSSTNPNLQNI 700

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   I         AD + IE R++A ++G++  L+AF +G D++  T A
Sbjct: 701 PIRDAQGKEIRKAFIPDADCLFFSADYSQIELRIMAHLSGDKNMLEAFNSGHDIHTATAA 760

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + + +   +VT D R   K     + Y                          ++     
Sbjct: 761 KIYKIPLEEVTSDMRRKAKTANFGIIYGISVFGL-------------------SDRLSIP 801

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
             +A+         +P                            ++   +  A ++  E 
Sbjct: 802 RAEAKELIEGYFATYP----------------------------DVKKYMDNAIQKAKEM 833

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G       R+                 LP   S             N+  R         
Sbjct: 834 GYVETLLGRK---------------RFLPDINSQ------------NSIVRGFAERNA-- 864

Query: 595 GKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASML 647
                  +Q  + DI+   M+              + + VHDE+    P  + E     +
Sbjct: 865 ---INAPIQGTAADIIKIAMVRIQNRLENESLQAKMTMQVHDELNFTVPKNELEALQKAV 921

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M +       +PL A+
Sbjct: 922 IEEMENAIK--LQVPLIAD 938


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLL 686

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 834 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 868

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 869 AFAREHGYVETIF-------------------GRRTHYPDIRASN---------PQVRAF 900

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 196/634 (30%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGE 114
            LK  LEN ++  +  N  ++ T+        I +      T++ + +            
Sbjct: 431 QLKPILENPNIRKIGQNIKYDLTIFAR---NGIELQGVAFDTMLQSYTLDSTGRHNMDNL 487

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    +    +EL  +     T + +                EY   D  +T ++ + 
Sbjct: 488 AERYLGHQTIPFEELAGKGKHQLTFDQI----------ELDKATEYAGEDAEITMKLHQL 537

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L     K           E  L  +   +   G  +D A     +  ++    +L+  + 
Sbjct: 538 LWSELQKTPELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVH 597

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G V +    ++L+  LF + GL +   T            +   Q        +  
Sbjct: 598 QEA-GEVFNLASTKQLQEILFNKLGLPILKKTPKGAPSTNEEVLEELAQMGHQVPVLLME 656

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                          G S+         P     +  R H    Q +
Sbjct: 657 HR--------------------------GLSKLKSTYTDKLPQMINAQTGRVHTSYHQAV 690

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA +G  ++ AD + IE R++A +A +   
Sbjct: 691 TATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIMAHLANDANM 750

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +KAF  G+D++ +T A  F V    VT +QR   K +   L Y         +A+  G++
Sbjct: 751 IKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEF---GLANQLGIS 807

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                             DA+ +     + +P           A ++     R+K     
Sbjct: 808 RT----------------DAKKYMELYFQRYP-----------AVQQFMLDIREK----- 835

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  + + +T+                                GR L   ++ ++  
Sbjct: 836 ----AAEKGYVETLF-------------------------------GRRLYLPEINSS-- 858

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
             N   R+               +Q  + DI+   M+   +A        +++ VHDE+V
Sbjct: 859 --NQMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDQAVRNCEDIAMIMQVHDELV 911

Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E   D  E    ++   M         +PL AE
Sbjct: 912 FEVKADRVEHYTQLIKAEMEKAIE--LKVPLIAE 943


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/617 (18%), Positives = 191/617 (30%), Gaps = 106/617 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ--- 55
           ID ET S                   +  +     P E W              +P+   
Sbjct: 318 IDLETTSLNPR------------EARVVGYAASCRPHEAWYIPVGHRYLGAPEQLPESLV 365

Query: 56  --VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
             +L   L++     +  N  ++  VL+        +    C  +LA     P+  +   
Sbjct: 366 LEILGPLLKDPARRKIGQNLKYDYQVLRIA---GFELEGIWCDTMLAAYLVNPARNSQGL 422

Query: 112 VGEALKLSSQKMEEGKELIARF-CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
              AL+    +M    E+     C+    E   DR  P           Y   D   T  
Sbjct: 423 DALALEYLDHRMISYAEVARSGKCELNFSEVDLDRAGP-----------YSCEDADATYL 471

Query: 171 IFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + + L P          L   E  L  +   +   G  +DV L   L+     +  +L+ 
Sbjct: 472 LHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIELEA 531

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQ 275
           ++     G   +    ++L   LF   GL +   T+     +T    L    +    A  
Sbjct: 532 QIHEHCGG-PFNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVA-- 588

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                                        R  LQ+   S+         P    P   R 
Sbjct: 589 -----------------------------RLLLQYRSISKLKSTYTDALPKLVAPATGRV 619

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H   +Q +T      +SDP+   I         +R   IA  G  ++ AD + IE RVLA
Sbjct: 620 HTSYNQAVTSTGRLSSSDPNLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLA 679

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G++   +AF  GED++  T +  F + P  VT + R   KV+   + Y  GA +   
Sbjct: 680 HLSGDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSL-- 737

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER--VKK 508
            A   G+        + +           +  R   ++    A    F+ T   R     
Sbjct: 738 -AKELGVTPKQAKAFIDSYFERH------SGARSFLDSCIREAEVCGFVTTIMGRRLCIP 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
               K+  V         A    I+   A I +         M++++    L++     L
Sbjct: 791 EIASKNGNVRAF--AQRNAVNYPIQGSAADIIKAAMLRVNRRMQEERVASRLIMQVHDEL 848

Query: 569 VYRDVGNNRSYLNTTTR 585
           ++      R  +    R
Sbjct: 849 IFEVPEGERDLMEELVR 865


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/704 (17%), Positives = 211/704 (29%), Gaps = 175/704 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57
               +D ET S   L             ++  +F F +H        H  P  P  L   
Sbjct: 314 RAFAVDLETTSLNPLE----------AEIVGISFSFREHEAYYIPVGHRYPGAPHQLSRD 363

Query: 58  ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--AL 109
                 K  L + +   +  N  ++  VL+      I +    C  +LA     P+  + 
Sbjct: 364 DVLGALKPLLLDPEKHKIGQNIKYDYQVLRRA---GIDMQGIWCDTMLASYLLNPTRTSQ 420

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                A++    +M    E+  +            +N             Y   D   T 
Sbjct: 421 GLDSLAVEFLDHRMISYAEVAGK--------GKEQKNFAQ--VEVEKASVYSCEDADATY 470

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            + K   P  ++          E  L  +   +   G  +D+ L   L+     +   L+
Sbjct: 471 LLHKLFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLLQRLSDGFGGQLADLE 530

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274
           +E+ +L  G   +    ++L   LF    L +   T+T     T    L         A 
Sbjct: 531 REIFALAGG-EFNVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNVDELERLAGEHEIA- 588

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                                         R  LQ+   S+         P        R
Sbjct: 589 ------------------------------RLILQYRSLSKLKSTYTDALPKLVDAASGR 618

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H   +Q +T+     +S+P+   I         +R   IA+EG  L+ AD + IE RVL
Sbjct: 619 VHTSYNQAVTNTGRLSSSEPNLQNIPIRSEEGRSIRHAFIAAEGCLLLSADYSQIELRVL 678

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ ++    AF   ED++  T A  F + P  VT++ R   K +   + Y  G  AF 
Sbjct: 679 AHLSADRVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTINFGVIY--GQGAFS 736

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                                                      A E        +     
Sbjct: 737 L------------------------------------------ARELGVSTKVAKEFIDN 754

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           +  +H+      +   +  E                        D   +  +L  GR L 
Sbjct: 755 YFARHAGARTFLDGCVREAE------------------------DNGYVTTIL--GRRLP 788

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYD 623
             D+ ++    N   R   +            +Q  + DI+ + M+              
Sbjct: 789 IPDIKSS----NGNIRAFAQRNA-----VNYPIQGSAADIIKQAMVRVVDRMEREGMKSR 839

Query: 624 IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           +++ VHDE+V E P+ ++    ML  H M    +    +PL+ +
Sbjct: 840 LIMQVHDELVFEVPEEEKLAMEMLVKHEMEHAVT--LRVPLRVD 881


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/697 (16%), Positives = 217/697 (31%), Gaps = 167/697 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
              ID ET + +D       + AE   ++ F+  FD          H+            
Sbjct: 350 HFAIDIET-TSLD------YRIAE---MVGFSIAFDAQDAYYVPLAHNYENAPQQLNREQ 399

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
           +   +K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDTMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+P    E  L+ ++         + + G  +D A    L+      R  L+
Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTREGLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +      +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    ++++N+ +   + +P                     +  
Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKVLPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E      E  +  +  +M S       +PL  E
Sbjct: 878 ELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVE 912


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/671 (18%), Positives = 228/671 (33%), Gaps = 158/671 (23%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMP--QVLKEALE 62
           D ET S  +L             ++  +F +            D   V+   ++ +   E
Sbjct: 377 DTETTSLNELE----------AELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIFRPFFE 426

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
             D+  VAHN  F+  VLK     DI +   +   ++A     P                
Sbjct: 427 KEDLLKVAHNLKFDYKVLKQY---DITVKGAMFDTMIAHYLLNPDG-----------RHG 472

Query: 123 MEEGKELIARFCKGETHECLYDRNKP---NHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           M+   E+   +        +  + K          R   +Y   D  VT ++++   P  
Sbjct: 473 MDYLSEVYLNYKPVSIETIIGKKGKKQGNFRDADLRTQTDYAAEDADVTFQLYELFAPQL 532

Query: 180 SKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            KE            L  +   +   G  +D       +  ++ +   L+ ++  L+ G 
Sbjct: 533 KKENLEELFYNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKGLEAKIFELS-GE 591

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +     +L   LF +                     +L P+A +    +   S   + 
Sbjct: 592 EFNMNSPRQLGEILFEKM--------------------QLDPKAKKTKTGQYATSEDVLQ 631

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           KL++  E       ++  L++    +         P Q     +R H    Q        
Sbjct: 632 KLSSKHEI------IKHILEYRTYQKLKSTYVDALPSQIDKDDNRVHTNFSQTTAATGRL 685

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            + +P+   I         +R   ++ EGKK++ AD + IE R++A ++GE+  +KAF+ 
Sbjct: 686 ASVNPNLQNIPIRTLRGQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQD 745

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++ +T A+ F +  A+V+K QR+  K +   + Y  GA A    A  TGL+      
Sbjct: 746 GEDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGIIYGQGAFAL---AEQTGLSRTE--- 799

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                        A+       E +P+              +K+   ++ ++  +L    
Sbjct: 800 -------------AKQMIEAYFETYPK--------------LKEYMAEQVNKARQL---- 828

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                      + I+ RKR    +     + NN ++   + R+                 
Sbjct: 829 --------GYVETILGRKRHLKDI-----NSNNFVVRGHAERN----------------- 858

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPD 638
                            VQ  + DI+   M+   +   +      ++L VHDE+V E P 
Sbjct: 859 ------------AVNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDELVFEAPA 906

Query: 639 TDEFNASMLYH 649
            +  +AS L  
Sbjct: 907 DEIESASHLIR 917


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/540 (19%), Positives = 208/540 (38%), Gaps = 47/540 (8%)

Query: 1   MATLFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + T   + ET + +  D+   G+  +     + L      + PV L +        + L+
Sbjct: 56  LVTALKELETHTVVGLDIETTGLDPHTS--EISLIQIAAPNRPVILIE-FRSITHKESLR 112

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEAL 116
             +E+  +  V HN  FE   L     ++     WI T+++A+    GLP  L+   +A 
Sbjct: 113 RFIEHHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAG 172

Query: 117 KLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            L     +Q ++  K+L              +RN P      R+        +  + ++ 
Sbjct: 173 VLPIPNLNQSIKNKKKLKQEL----------NRNLPGSYSLMRVAARELGYSLDKSLQVS 222

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCV---DVALAHTL-NQIVDVERTKLDQELESLTYG 228
              +PL+ ++ +        ND    +   D   +  + NQ+ D  + +L         G
Sbjct: 223 DWGKPLTQEQLQY-----AANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMG 277

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT----PQAIQVFNNRMRAS 284
           L+     L++    L  E     ED  +  C+ +   + +L       +I + +N    +
Sbjct: 278 LMGMGLDLDRWGE-LAKEIETRREDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIA 336

Query: 285 RSAVLKLNTLVEAMNSDGRLR-------GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             A L ++T   + ++  +L          +++   S+     G   P    P   R H 
Sbjct: 337 ALARLGIHTNSTSKDTLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHP 396

Query: 338 ELDQIITHLPTSITSDPDPLQIIS-DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            ++Q+         S+P+  QI      RSC + + G KL++AD + IE R+ A +A + 
Sbjct: 397 NVNQMRAASGRFSFSNPNLQQIPRERQYRSCFVPASGYKLIIADYSQIELRIAAEIANDS 456

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TT 455
             + A+   +DL+  T A        +VTK +R +GK +   L Y  GA   +  A    
Sbjct: 457 VMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYGMGATKLRIYAETNY 516

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+ ++        ++  + +     + +          ++D  I T   R+++ W+ +  
Sbjct: 517 GVKMSIEEAQRFRDNFFKGYPGLHQWHQDTAFKLRTTKVKD--IRTLSGRLRR-WKDEPP 573


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/597 (16%), Positives = 193/597 (32%), Gaps = 97/597 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59
           L ID ET     +             ++  +F   ++         +      +    + 
Sbjct: 381 LSIDTETTGTEPME----------AELVGMSFSNAENRAYYVPVPANRDEALKIVNEFRP 430

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA- 115
             EN +   V  N  ++  VL+   N  + +   +   +LA     P     +  + E  
Sbjct: 431 LYENENSMKVGQNIKYDMIVLQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+  +  ++E                   R+ P           Y   D  VT ++   L
Sbjct: 488 LRYRTIHIDE-------LIGSRGKNQKSMRDLPPED-----VYRYACEDADVTLKLKNVL 535

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E    K          E  L  +   I   G  +D       ++   +   ++++E+ +L
Sbjct: 536 EKELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYAL 595

Query: 226 TYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
             G   +    +++   LF +   +     T+T    T + VL S +       ++    
Sbjct: 596 ANGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILE-- 653

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                        + G  +         P    PR  R H   +
Sbjct: 654 -----------------------------YRGLKKLLSTYIDALPQLINPRTGRIHTSFN 684

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +S+P+   I         +R   I  +G +   AD + IE R++A ++ +
Sbjct: 685 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQD 744

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF +G D++  T A+ + V  ++VT D R   K     + Y         +A   
Sbjct: 745 RNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVF---GLAERM 801

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            ++      L+        + +     +   +   + A E+ ++ T   R K+     +S
Sbjct: 802 NVSRQEAKELIDG------YFETYPQIKEYMDKSIQVARENGYVETIFHR-KRFLPDINS 854

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570
           R + +     +        G A    K   + L+Y +   NNL   ++L     L +
Sbjct: 855 RNAVVRGYAERNAINAPIQGSAADIIK-VAMSLIYQRIQSNNLKAKMILQVHDELNF 910


>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
 gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
          Length = 931

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/588 (17%), Positives = 188/588 (31%), Gaps = 89/588 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64
           D     +   A+   ++  +F  +          H  + +PQ L         K  LE+ 
Sbjct: 357 DTETTSLD--AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLSALKPLLEDP 414

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
             T +  +  ++  VL       I +       +L     +   +       ALK   + 
Sbjct: 415 AKTKICQHGKYDMNVLMHY---GIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRG 471

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--------- 173
               +++  +  K  T + +          A    G Y   D  VT  + +         
Sbjct: 472 TIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRLHQTLLGKLEQT 521

Query: 174 --RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
              L+ L+  E  L  +   I   G  VD  L    +  +  +  +L++E   +  G   
Sbjct: 522 PSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAFDIA-GEEF 580

Query: 232 SSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L   L+ + G  +   T     +T + VL+   +      +V           
Sbjct: 581 NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKV----------- 629

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                               +Q    S+         P Q  PR  R H    Q +T   
Sbjct: 630 -------------------IMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATG 670

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   +A+ G KL+ AD + IE R++A +A +   L AF
Sbjct: 671 RLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAF 730

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +   D++  T A  F V   QV+ DQR   K +   L Y   A     +A    +     
Sbjct: 731 QNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAF---GLAKQIDVGRKEA 787

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +    A               E     A E  ++ T   R +    + +S+   +  
Sbjct: 788 QEYIDRYFARYP------GVLAYMERTRTQAAEQGYVETLFGR-RLYLPEINSKNGAMRK 840

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              +        G A    KR  + +    +D   +  ++L     LV
Sbjct: 841 GAERTAINAPMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELV 888


>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
 gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
          Length = 924

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/539 (16%), Positives = 164/539 (30%), Gaps = 78/539 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
             L+  L++     +  +  ++  VL+      + +  +    +L     N   +     
Sbjct: 399 DALRPVLQDPAKKKLGQHGKYDLHVLRRH---GVEVQGYHDDTMLESFVLNSTATRHDMD 455

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+       + +++  +  K            P  +        Y   D  +T  + 
Sbjct: 456 SLALRYLGYNTIKFEDVAGKGAKQ----------IPFSQVGIDEASRYAAEDADITLRLH 505

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L+P               E  L  +  +I   G  +D       +Q +        Q+
Sbjct: 506 RALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANGVRIDTVELRRQSQDLSSRMLAAQQK 565

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVF 277
              L  G   +    ++L+  LF E  L           +T +  L +            
Sbjct: 566 ATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP---- 620

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                      R  L++ G ++         P    P   R H 
Sbjct: 621 ---------------------------RVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHT 653

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q         +SDP+   I         +R   IA EG +L+ AD + IE R++A +
Sbjct: 654 SYHQSGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHL 713

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   + AFE G D++  T A  F     +VT ++R   K +   L Y   A     +A
Sbjct: 714 SEDPGLVGAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAF---GLA 770

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++       V        +    +F   M++   +    +   G            
Sbjct: 771 RNLGIDRGQAQDYV--ALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRL-----YLND 823

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVY 570
            H+R   L     +A       G A    KR  V +    +D      ++L     LV+
Sbjct: 824 IHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVF 882


>gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
          Length = 914

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/588 (17%), Positives = 188/588 (31%), Gaps = 89/588 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64
           D     +   A+   ++  +F  +          H  + +PQ L         K  LE+ 
Sbjct: 340 DTETTSLD--AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLGALKPLLEDP 397

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
             T +  +  ++  VL       I +       +L     +   +       ALK   + 
Sbjct: 398 AKTKICQHGKYDMNVLMHY---GIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRG 454

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--------- 173
               +++  +  K  T + +          A    G Y   D  VT  + +         
Sbjct: 455 TIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRLHQTLLGKLEQT 504

Query: 174 --RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
              L+ L+  E  L  +   I   G  VD  L    +  +  +  +L++E   +  G   
Sbjct: 505 PSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAFDIA-GEEF 563

Query: 232 SSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L   L+ + G  +   T     +T + VL+   +      +V           
Sbjct: 564 NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKV----------- 612

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                               +Q    S+         P Q  PR  R H    Q +T   
Sbjct: 613 -------------------IMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATG 653

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   +A+ G KL+ AD + IE R++A +A +   L AF
Sbjct: 654 RLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAF 713

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +   D++  T A  F V   QV+ DQR   K +   L Y   A     +A    +     
Sbjct: 714 QNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAF---GLAKQIDVGRKEA 770

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +    A               E     A E  ++ T   R +    + +S+   +  
Sbjct: 771 QEYIDRYFARYP------GVLAYMERTRTQAAEQGYVETLFGR-RLYLPEINSKNGAMRK 823

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              +        G A    KR  + +    +D   +  ++L     LV
Sbjct: 824 GAERTAINAPMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELV 871


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 469 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 525

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 526 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 568

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 569 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 628

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 629 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 687

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 688 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 716

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 717 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 776

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 777 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 834

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 835 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 873

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 874 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 901

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 902 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 943

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 944 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 985


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLL 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRTHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/657 (18%), Positives = 213/657 (32%), Gaps = 138/657 (21%)

Query: 35   FGFDDHPVELWDCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
            FG    P ++ + V   +  +     LK  LEN  V  V  N  ++  VL     +++  
Sbjct: 508  FGEGAAPSDVVEPVPGQIPLKEAVARLKPLLENPGVLKVGQNLKYDWVVLARY-GIEVAP 566

Query: 91   HRWICTLVLARSNGL-PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK-P 148
                 T++++               A +    +     ++               RNK  
Sbjct: 567  FD--DTMLISYVLDAGKGGHGMDELARRHLGHQPITFSDVA-----------GTGRNKVT 613

Query: 149  NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYC 198
              R A      Y   D  VT  +++ ++P    E            L  +   +  RG  
Sbjct: 614  FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQRGIR 673

Query: 199  VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            VD  +   L+        +L++E++    G   S    +++   LF + GL     T + 
Sbjct: 674  VDREMLSRLSGDFSQILVRLEEEIQEDA-GEKFSVGSPKQIGDILFGKMGLPGAKKTPSG 732

Query: 259  CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
                 ++  +   QA      +                           L++   S+   
Sbjct: 733  QWATPATLLEELAQAGHELPKK--------------------------ILEWRQLSKLKS 766

Query: 319  WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373
                          +R H       T      +S+P+   I         +R   +A+ G
Sbjct: 767  TYTDALQAHADRETARVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAAPG 826

Query: 374  KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             +L+ AD + IE R+LA MA      KAFE G D++  T +  F V   ++T D R   K
Sbjct: 827  NRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMFGVPLKEMTPDLRRRAK 886

Query: 434  VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
             +   + Y   A     +A   G+     +  +K      ++ +     R   E      
Sbjct: 887  TINFGIIYGISAF---GLADRLGIGREEASAFIK------QYFEQFPGIRDYIET----- 932

Query: 494  IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                         KK+ R K   V+ L+  +                         Y + 
Sbjct: 933  ------------TKKSCRDK-GYVTTLFGRVCH-----------------------YPQI 956

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
              NN     PS R+ V       R  +N   +         G   + I +A++R    E 
Sbjct: 957  RSNN-----PSERASV------ERQAINAPIQ---------GSAADIIRRAMTR---MEA 993

Query: 614  MMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             + A K    ++L VHDE+V E  + + E    ++  +M   P+ A  L  PL  E 
Sbjct: 994  ALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKVPLVVEA 1050


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 818 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 856

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 857 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
 gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/650 (16%), Positives = 195/650 (30%), Gaps = 162/650 (24%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A  + D PV+        V+ + LK  LE+     +  +  ++  +     N  + +  
Sbjct: 378 VAHNYQDAPVQ---LSRQHVL-EKLKPWLEDASKPKLGQHLKYDSHI---FANYGVRLAG 430

Query: 93  WICTLVLARS---NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                +L      +  P  +        L+++ +E      A  C     +  ++     
Sbjct: 431 VKHDTLLESYVFESHRPHDMD------SLAARHLERKTITYAEVCGKGASQIGFN----- 479

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYC 198
              A     EY   D  VT  + + + P               E     + Q I   G  
Sbjct: 480 -EVAIERATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVL 538

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT--- 255
           +D       +  +     +++Q+   L  G   +    ++L   LF +  L +   T   
Sbjct: 539 IDSERLGQQSHDLGKRMLEIEQQAYDLA-GQPFNLNSPKQLGEILFGKLELPVVKKTASG 597

Query: 256 -ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
             +T + VL    +  P    +                                 + G +
Sbjct: 598 APSTDEEVLQKLAEDYPLPKVLL-------------------------------DYRGLA 626

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
           +         P    P   R H    Q +       ++DP+   I         +R   +
Sbjct: 627 KLKSTYTDKLPKMVNPATGRVHTNYAQAVAVTGRLSSNDPNLQNIPIRTAEGRRIREAFV 686

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A EG  +V AD + IE R++A ++ ++  LKAF   ED++  T A  F +AP QV  +QR
Sbjct: 687 APEGSVIVSADYSQIELRIMAHISEDENMLKAFANNEDIHRATAAEIFGIAPEQVESEQR 746

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              KV+   L Y   A     +AS  G+        +      + +       R+M E  
Sbjct: 747 RYAKVINFGLIYGMSAF---GLASNLGIERAAAQMYID-----KYFMRFSGVKRYMDETR 798

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            +                                      +     + +  R+       
Sbjct: 799 LQ-------------------------------------AKARGYVETVFGRR------- 814

Query: 550 YMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                     L LP   S    R  G  R+ +N                     Q  + D
Sbjct: 815 ----------LWLPEINSPNGPRRQGAERAAINAPM------------------QGTAAD 846

Query: 609 ILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651
           ++   M+              +++ VHDE+V E P  + E     L  LM
Sbjct: 847 LIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEMVREKLPELM 896


>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
 gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
          Length = 904

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/695 (15%), Positives = 195/695 (28%), Gaps = 162/695 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------ 57
            ID ET S           Y  D  ++  +   +          H  P  P  L      
Sbjct: 328 SIDLETNSLN---------YM-DAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQLDRDRVL 377

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              +  LE      +  N  ++ +VL       I +       +L        +      
Sbjct: 378 DALRPLLEAEQPEKMGQNLKYDMSVLARY---GIELRGVAYDSML-------ESYVLDST 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +     +   K L       E       R  P         G Y   D  +   + + 
Sbjct: 428 ATRHDMDSLAS-KYLGVEVTSYEQLCGKGVRQVPFAEIDVERAGHYAAEDADIALRLHQL 486

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P    E             L  +   +   G  VD  L    ++ +     +++Q   
Sbjct: 487 LYPRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEELAGRMAEVEQRAH 546

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G   +    ++++   F   GL +   T         S  +               
Sbjct: 547 EEA-GEAFNLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELSARGHELP----- 600

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                R  L+  G S+         P        R H    Q +
Sbjct: 601 ---------------------RLILEHRGLSKLKSTYTDKLPQLIHRDTGRVHTSYHQAV 639

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                  +SDP+   I         +R   +AS G +L+ AD + +E R++A ++G++  
Sbjct: 640 AATGRLSSSDPNLQNIPVRTPEGRRIRKAFVASPGHRLITADYSQVELRIMAHLSGDEGL 699

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AFE GED++  T A  F  A  +V  +QR   K +   L Y   A     +    G+ 
Sbjct: 700 RRAFEQGEDIHRATAAEVF--AADEVNDEQRRAAKAINFGLIYGMSA---WGLGRQLGIP 754

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +     +        + +     R   +   E A                         
Sbjct: 755 RDEAQTYID------RYFERYPGVRAFMDRAREQAR------------------------ 784

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  Q + +T+         +R  VP ++ +  +               R     R+
Sbjct: 785 ------EQGYVETV-------FGRRLHVPEIHSRNRQ---------------RREYAERT 816

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEI 632
            +N                     Q  + D++   M++             +V+ VHDE+
Sbjct: 817 AINAPM------------------QGTAADVIKRAMIDVDALLNERFPESRLVMQVHDEL 858

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           V E P+         +  LM  +      +PL+ E
Sbjct: 859 VLEVPEAQATAVGDEVRRLMEGSDRGMVSVPLEVE 893


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/637 (18%), Positives = 205/637 (32%), Gaps = 134/637 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           Q LK  LE+     V  N+ F+R +    ++  I +   +   +LA     P     L  
Sbjct: 434 QALKPILESDRYPKVFQNTKFDRLI---FYHQGINLKGVVFDTLLASYVLHPEMSHNLSD 490

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +     LS    +  KEL               + K            YC  D   T  +
Sbjct: 491 LCYRY-LSGITSQSYKELA------------IPKGKTIASLDIETVANYCGLDAYATFLL 537

Query: 172 FKRLE-----------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +L+            L   EQ L  +   + D G  +D      L+Q ++ +   ++Q
Sbjct: 538 VSKLKQELKSFPSLEKLLLEVEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDLHIIEQ 597

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +      G + +    ++L   LF +  L+ +   +T                       
Sbjct: 598 QAYQEA-GEIFNLGSPKQLGEILFEKLELNRKKSRKT----------------------- 633

Query: 281 MRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               ++     +  +E +  D   +   L +   S+         P    P   R H   
Sbjct: 634 ----KTGYSTDHATLEKLQGDHPIIDHILDYRTLSKLKSTYVDALPALVRPDTQRVHTNF 689

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q +T      +S+P+   I      S  +R   I  E   LV AD + IE R+LA ++ 
Sbjct: 690 NQTVTATGRLSSSNPNLQNIPIRTEFSRKIRQAFIPQENWLLVSADYSQIELRILAHLSQ 749

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E   L+A+   +D++  T    F+     +T  +R +GK +   + Y  GA   Q+ A  
Sbjct: 750 EVVLLEAYRNNQDVHSVTAKLLFDK--ETITPQERNLGKTINFGVIYGMGA---QRFARE 804

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +  N   + +    ++   M     + AI D F+ T   R         
Sbjct: 805 AGVSAAEGKTFI--NKYRQRYAKVFDYLERM----KKEAIADGFVTTILGR--------- 849

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                                ++  N +   L   +      + 
Sbjct: 850 -------------------------------------RRYFNFITESLQKLKGSDPEKIN 872

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHD 630
                +N    QL R            +Q  S DI+   M+            ++L VHD
Sbjct: 873 LEVLNINYADAQLLRAAANAP------IQGSSADIIKIAMIKMQEILSHYQARLLLQVHD 926

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E P  + E   + +   M +  +    +PL  E
Sbjct: 927 ELVFEIPLNEWEELQTKIKETMENAVT--LTVPLVVE 961


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 818 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 856

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 857 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE R+
Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRI 775

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984


>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
 gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
          Length = 898

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/589 (16%), Positives = 190/589 (32%), Gaps = 90/589 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP--------QVLKEALENT 64
           DL    +  Y  D  ++  +F  +          H    V P        + L+  LE+ 
Sbjct: 325 DLETTSLN-YM-DAEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHVLEQLRPLLEDP 382

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               +  N  ++ +VL      DI +       +L     +   +       ALK    +
Sbjct: 383 RRAKLGQNLKYDMSVLAHY---DIALRGVRFDTMLESYILDSTATRHDMDSLALKYLGHR 439

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
             + +++  +  K  T + +          A     EY   D  +   + + L P   + 
Sbjct: 440 TIKFEDVAGKGAKQLTFDQV----------AIERATEYAAEDADIALRLHRVLYPKLRQL 489

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   +   G  V   L    +  +     +++  +     G   
Sbjct: 490 PGPERVFHAIEMPLLPVLSRMERTGVLVSRELLAAQSAELAQRLAEIEASVYR-AAGCEF 548

Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++++  L+   GL +         +T + VL       P    +  +R  A    
Sbjct: 549 NLGSPKQIQAVLYDRQGLPVLAKTPKGAPSTAESVLQELAATYPLPRMILEHRALA---- 604

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                      +         P    PR  R H    Q +    
Sbjct: 605 ---------------------------KLKSTYTDKLPLLIHPRTGRVHTSYRQAVAATG 637

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA +G +L+  D + +E R++A  +G++   +AF
Sbjct: 638 RLSSSDPNLQNIPVRSPEGRRIRRGFIARQGYRLLAVDYSQVELRIMAHFSGDERLHRAF 697

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             GED++  T A  F  A  QVT +QR   K +   L Y   A     +A   G+  +  
Sbjct: 698 AAGEDIHRATAAEVFATALEQVTAEQRRAAKAINFGLIYGMSAY---GLARQLGIERDAA 754

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
            H V+     E +   + F   ++    E    +   G           + ++  ++   
Sbjct: 755 QHYVE--RYFERYPGVKAFMERIRREARERQYVETVFGRRL-----YLPEINASNAQRRQ 807

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
              +        G A    KR  V +  +++ ++ ++ ++L     LV+
Sbjct: 808 AAERTAINAPMQGSAADIIKRAMVRVDQWLQSEREDVFMVLQVHDELVF 856


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/597 (16%), Positives = 193/597 (32%), Gaps = 97/597 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59
           L ID ET     +             ++  +F   ++         +      +    + 
Sbjct: 381 LSIDTETTGTEPME----------AELVGMSFSNAENRAYYVPVPANRDEALKIVNEFRP 430

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA- 115
             EN +   V  N  ++  VL+   N  + +   +   +LA     P     +  + E  
Sbjct: 431 LYENENSMKVGQNIKYDMIVLQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+  +  ++E                   R+ P           Y   D  VT ++   L
Sbjct: 488 LRYRTIHIDE-------LIGSRGKNQKSMRDLPPED-----VYRYACEDADVTLKLKNVL 535

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E    K          E  L  +   I   G  +D       ++   +   ++++E+ +L
Sbjct: 536 EKELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYAL 595

Query: 226 TYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
             G   +    +++   LF +   +     T+T    T + VL S +       ++    
Sbjct: 596 ANGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILE-- 653

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                        + G  +         P    PR  R H   +
Sbjct: 654 -----------------------------YRGLKKLLSTYIDALPQLINPRTGRIHTSFN 684

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +S+P+   I         +R   I  +G +   AD + IE R++A ++ +
Sbjct: 685 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQD 744

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF +G D++  T A+ + V  ++VT D R   K     + Y         +A   
Sbjct: 745 RNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVF---GLAERM 801

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            ++      L+        + +     +   +   + A E+ ++ T   R K+     +S
Sbjct: 802 NVSRQEAKELIDG------YFETYPQIKEYMDKSIQVARENGYVETIFHR-KRFLPDINS 854

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570
           R + +     +        G A    K   + L+Y +   NNL   ++L     L +
Sbjct: 855 RNAVVRGYAERNAINAPIQGSAADIIK-VAMSLIYQRIQSNNLKAKMILQVHDELNF 910


>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
 gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
          Length = 932

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/637 (15%), Positives = 181/637 (28%), Gaps = 150/637 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  +  +  N+ ++  +      L++        +  A  +GL         + 
Sbjct: 410 LKPVLEDPAILKIFQNAKYDTKIFSRH-GLNVAPIDDTMLMSYAMFSGL-HNHGMDTLSE 467

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     K L+       T + +                +Y   D  VT  +++  +
Sbjct: 468 HYLGHTPISIKTLLGTGKSAITFDKV----------KIEDAVKYAAEDADVTLRLWQLFK 517

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P   +E          + L  +   +   G  VD      ++     +   L+ E+  L 
Sbjct: 518 PRLHREKVTTVYETLERPLVPVLAQMEMHGVQVDRDTLSRMSNAFAQKMAGLEAEIHELA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   LF + GL      +T    T   VL           +V + R  
Sbjct: 578 -GQSFNVGSPKQLGEILFDKLGLEGGKKGKTGAYATGADVLEDLAAQHDLPARVLDWRQL 636

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          S+              P   R H    Q 
Sbjct: 637 -------------------------------SKLKSTYTDALQTHIDPDTGRVHTSYLQT 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                   ++DP+   I         +R   +A EGK LV  D + IE R+LA +AG + 
Sbjct: 666 GASTGRLASTDPNLQNIPIRTEEGRRIREAFVAPEGKVLVSLDYSQIELRILAHVAGIES 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  GED++  T +  F+V   ++T D R   K +   + Y        +       
Sbjct: 726 MKQAFRDGEDIHAATASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIAR- 784

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                              +A+ F     E +P                           
Sbjct: 785 ------------------GEAQGFIDRYFEKYP--------------------------- 799

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             +   +        E+G       R+               +  P   +         R
Sbjct: 800 -GIKEYMDDTVAFAKEHGHVATLFGRK---------------IHTPEINAKGPHAGFARR 843

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----DIVLTVHDEIV 633
           + +N                    +Q  + DI+   M+    A       ++L VHDE++
Sbjct: 844 AAINAP------------------IQGSAADIIRRAMIRMPDAISGLPVKMLLQVHDELI 885

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            E  +   +   S++  +M      A    +PL  + 
Sbjct: 886 FEVEEGGVDKAVSVIRDVMEGAADPAVKLDIPLVVDA 922


>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
 gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
          Length = 914

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 116/701 (16%), Positives = 212/701 (30%), Gaps = 176/701 (25%)

Query: 5   FIDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP 54
            ID ET S + L           + G+  Y      I  A  + D PV+L       ++ 
Sbjct: 340 SIDTETTSLVPLQAQLVGISLCCEPGVAAY------IPVAHRYADAPVQL----SRELVL 389

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             ++  LE+     V  N  ++  +     N  I +      T++ +       +     
Sbjct: 390 GKMQAWLEDPAKAKVGQNLKYDSHI---FANHGITLRGIAHDTMLESYVFESHRSHDMDS 446

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+   +     +E+    C     +  +D      +       EY   D  +T ++ +
Sbjct: 447 LALRHLGRTTITFQEV----CGKGASQICFD------QVDIARATEYAAEDADITLQLHQ 496

Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            + P  + ++ L ++            Q I   G  +D  +    +  +     +++   
Sbjct: 497 AMLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTGILQVQSHELGKRMLEIETSA 556

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    +++    F +  L +         +T + VL+   +  P    +  
Sbjct: 557 YELA-GQPFNLNSPKQIGEIFFEKLQLPVVKKTPSGAPSTDEEVLAKLAEDYPLPKVLLE 615

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P    P   R H  
Sbjct: 616 YRSL-------------------------------SKLKSTYTDKLPKMIDPTTGRVHTN 644

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       +++P+   I         +R   +A  G  +V AD + IE R++A ++
Sbjct: 645 YAQTVAVTGRLASNEPNLQNIPIRTAEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLS 704

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   L+AF  G D++  T A  F+   A VT +QR   KV+   L Y   A     +A 
Sbjct: 705 GDANMLRAFADGIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMSAF---GLAG 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        +      + +       ++M E   +                    + 
Sbjct: 762 NLGIERGAAQSYID-----KYFARFSGVKQFMDETRLKA-------------------KA 797

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572
           H  V  ++                                      L LP   S    R 
Sbjct: 798 HGYVETVFGR-----------------------------------RLWLPEINSPNGPRR 822

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--IVL 626
            G  R+ +N                     Q  + D++   M+         G    +V+
Sbjct: 823 QGAERAAINAPM------------------QGTAADLIKLSMVAVQGWLETDGLKSLMVM 864

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            VHDE+V E P  + E     L  LM         +PL AE
Sbjct: 865 QVHDELVLEVPQEELELVRVKLPALMAGVAE--LKVPLTAE 903


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 453 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 509

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 510 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 552

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 553 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 612

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 613 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 671

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 672 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 700

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 701 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 760

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 761 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 818

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 819 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 853

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 854 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 885

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 886 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 927

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 928 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 969


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 196/641 (30%), Gaps = 160/641 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVG 113
           LK  LE+     +  N  ++  V     N  I +  ++   +L         P +L+++ 
Sbjct: 415 LKSWLEDGSRAKLGQNVKYDTHV---FANHGIAVRGYVHDTLLQSYVLEAHKPHSLESLA 471

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                          L  +    E       +  P  +       EY   D  +T ++ +
Sbjct: 472 SRH------------LDRKGLSYEDVAGKGAQQIPFAQVELTRATEYSGEDSDMTLDVHR 519

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E     +   I   G  +D AL    +  +      L+QE 
Sbjct: 520 VLWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSALLARQSADLAQRMVALEQEA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +    +++   LF + G+  +  T     +T + VL+      P   ++  
Sbjct: 580 HALA-GQPFNLGSPKQIGEILFNKLGIPAKKKTASGAPSTDEEVLAELAADYPLPAKLLE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R  A                               +         P        R H  
Sbjct: 639 HRSLA-------------------------------KLKGTYTDKLPLMVNAATGRVHTN 667

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       ++DP+   I         VR   IA  G  ++ AD + IE R++A ++
Sbjct: 668 YAQAVAVTGRLASNDPNLQNIPIRTPEGRRVREAFIAPPGHVILSADYSQIELRIMAHIS 727

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   LKAF  G D++  T +  FNV  A+V+ +QR   KV+   L Y  GA     +AS
Sbjct: 728 EDPGLLKAFAEGLDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMGAF---GLAS 784

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        +    A                                  VK+   + 
Sbjct: 785 NLGIEQKAAKDYIDRYFAR------------------------------FAGVKRYMDET 814

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572
            +R  EL               + +  R+                 + LP        R 
Sbjct: 815 RARAKEL------------GYVETLFGRR-----------------IYLPEINGGNGPRR 845

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVL 626
            G  R  +N                     Q  + D++   M+    A         +V+
Sbjct: 846 TGAERQAINAPM------------------QGTAADLIKLAMIAVQAALDAQQRATCMVM 887

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            VHDE+V E P+ + ++  + +  LM         +PL AE
Sbjct: 888 QVHDELVFEVPEAELDWARTAVPELMAGVAE--LKVPLLAE 926


>gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
 gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 104/599 (17%), Positives = 205/599 (34%), Gaps = 85/599 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVA 70
           D    G+        ++  AF ++           D    Q + EAL    E  ++  + 
Sbjct: 385 DTETTGLNP--LTAELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRCFFEAENIQKIG 442

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VL      ++ +   +   +LA     P         A    +       EL
Sbjct: 443 QNLKYDIKVLAKY---NVEVKGPLFDTMLAHYLINPDMRHNMDVLAETYLNYTPVSITEL 499

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I +  K      L  R+ P          EY   D  +T ++ +  E             
Sbjct: 500 IGKKGK----NQLSMRDVP-----LDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFD 550

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +D     +L+  ++ +   L  ++  +  G   +    ++L
Sbjct: 551 DIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVA-GEEFNIASPKQL 609

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T+T    T + +LS   K                          
Sbjct: 610 GIILFEKLKLVDKPKKTKTGQYKTGEDILSVLAKDHEI---------------------- 647

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                    +R  L++ G ++         P Q      R H +  Q +       +++P
Sbjct: 648 ---------IRNILEYRGLAKLKSTYVDALPLQVEESTGRVHTDYMQTVAATGRLSSNNP 698

Query: 355 DPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   I   +   L+ AD + IE R++A ++ E+  ++AF+ GED+
Sbjct: 699 NLQNIPIRTERGRQVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIEAFKNGEDI 758

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T ++ F V   +VT+ QR+  K +   + Y   A     +++ T L+      L+ T
Sbjct: 759 HASTASKVFGVPIEEVTRAQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGEAKELIDT 815

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 +E      ++M E     A ++ ++ T  +R ++  +  +SR + +     +  
Sbjct: 816 -----YYETYPKLKKYMSEQV-HFARDNGYVKTILDR-RRYLKDINSRNAVVRGAAERNA 868

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                 G A    K   +  +Y K +  N    ++L     LV+         + T  +
Sbjct: 869 VNAPIQGSAADIIKIAMI-NIYNKLEAGNYKTKMLLQVHDELVFDVYKPELEKMTTLIK 926


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 101/594 (17%), Positives = 187/594 (31%), Gaps = 92/594 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59
           L +D ET S   +          D  ++  +F  ++          +      +  + K 
Sbjct: 350 LSLDTETTSTNPI----------DAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIFKP 399

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKL 118
             EN D+  V  N  ++  VL    N  + +   +   +LA     P         A  L
Sbjct: 400 IYENPDILKVGQNLKYDLEVLH---NYGVTLKGKMFDTMLAHYVIQPELRHNMDYMAETL 456

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEP 177
            + +     ELI              +N+ + RE   +   EY   D  +T ++   LE 
Sbjct: 457 LNYRTIHIDELI----------GPRGKNQKSMRELDPKEVYEYAAEDADITLQLKNVLET 506

Query: 178 LSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
              +          E  L  +   I   G  +D       + I+       + E+  L  
Sbjct: 507 KLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEIYQLA- 565

Query: 228 GLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
           G   +    +++   LF +   +     T+T    T + VL   +  +P   ++   R  
Sbjct: 566 GEEFNISSPKQVGDILFGKMKIVEKPKKTKTGQFVTSEEVLQQLENKSPIVAKILEYR-- 623

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G  +         P    PR    H   +Q 
Sbjct: 624 -----------------------------GLKKLLGTYVDALPKLINPRTGHIHTSFNQA 654

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           IT      +SDP+   I         +R C I   G     AD + IE RV+A ++ ++ 
Sbjct: 655 ITATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKN 714

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF  G D++  T A+ +     +VT+D+R   K     + Y         +A    +
Sbjct: 715 MIEAFMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIYGITTY---GLAQRLDI 771

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +      L+      E + +         E     A    +  T   R ++     +S  
Sbjct: 772 DNREAKELI------EGYFETFPQVYEYMERAKADARAKGYAETLFHR-RRYLPDINSHN 824

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570
           + +     +        G A    K   + +    K++  +  L+L     L +
Sbjct: 825 ATVRGYAERNAINAPIQGSAADIIKVAMIRISDRFKRENIHSKLILQVHDELNF 878


>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
 gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
          Length = 939

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 117/685 (17%), Positives = 193/685 (28%), Gaps = 178/685 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVMP-----QVLKEA 60
           D     +   A    ++  +F  +          H            +P       L+  
Sbjct: 363 DTETTSLDPMA--ARLVGMSFAVEPGEAAYLPLAHRGAAQLPEAPEQLPLDEVLDRLRPW 420

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            E+     +  N  ++  VL     + +                   A   + E+  L S
Sbjct: 421 FESDRHAKLGQNLKYDAHVLANH-GIAL----------------RGIAHDTLLESYVLES 463

Query: 121 QKMEEGKELIARF-----CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            K  +   L  R                 +             EY   D  VT  + + L
Sbjct: 464 DKAHDMDSLAKRHLGLATIPYTEVCGKGAKQIGFDEVDVARATEYAAEDADVTLRLHQHL 523

Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P               E  +  + Q +   G  +D  L    ++ +      L+ E  +
Sbjct: 524 CPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLGQHSEELGRRLYTLEGEAHA 583

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L   LF + GL +   T T    T + VL    +  P    +  +R
Sbjct: 584 LA-GQPFNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLEKLAEDYPLPKLLLEHR 642

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P    PR  R H    
Sbjct: 643 -------------------------------GLSKLKSTYADKLPRMVNPRTGRVHTSFS 671

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q         +S+P+   I         +R+  IA     +V AD + IE R++A ++ +
Sbjct: 672 QATAVTGRLSSSEPNLQNIPIRTPEGRRIRAAFIAPRDHLIVSADYSQIELRIMAHLSDD 731

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF  GED++  T    F VAPA+VT +QR   KV+   L Y   A     +A   
Sbjct: 732 ARLLEAFARGEDVHRATAGEVFGVAPAEVTSEQRRYAKVINFGLIYGMSA---HGLAKNL 788

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +        +        +M     E                        
Sbjct: 789 GIERAAAQAWID-----RYFARYPGVAEYMDRTRAEAR---------------------- 821

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVG 574
                     Q + +T+   +                       L LP  R+    R  G
Sbjct: 822 ---------EQGYVETVFGRR-----------------------LYLPDIRASQAGRRAG 849

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
             R+ +N                     Q  + D++ + M+              +VL V
Sbjct: 850 AERAAINAPM------------------QGTAADLIKKAMIATDAWLASCGLKSKLVLQV 891

Query: 629 HDEIVCETPDTD-EFNASMLYHLMT 652
           HDE+V E P  + E     L  LM 
Sbjct: 892 HDELVLEVPGAELETVREELPRLMG 916


>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
          Length = 903

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/575 (17%), Positives = 186/575 (32%), Gaps = 88/575 (15%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
           K G   Y      +  A  + D P +      D  + + LK  LE+     + H+  ++R
Sbjct: 351 KTGEAAY------LPLAHDYADAPQQ---LDRDETL-KRLKPLLESARHKKLGHHLKYDR 400

Query: 78  TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
            VL    N  I ++      +L     N   S       A K    +    +E+  +  K
Sbjct: 401 NVL---LNHGIELNGIEHDTMLESYVLNSTASRHDMDSLAQKYLDYRTTHYEEVAGKGAK 457

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQE 184
                 +                 Y   D  +T  + + L P               E  
Sbjct: 458 QIPFSQVRI----------EDATPYAAEDADITLRLHEHLWPQLSAAEGQCRVYREIEMP 507

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  VD       +  +     ++++E   +  G   +    ++++  L+
Sbjct: 508 LVPVLSRMERTGVKVDAERLFAQSHELAERMGQIEREAHEVAGG-AFNLGSPKQIQEILY 566

Query: 245 LETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
               L +         +T + VL       P    +  +R                    
Sbjct: 567 ERQKLPVLRKTPKGQPSTAEDVLEQLALDYPLPKLILEHRSL------------------ 608

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                        S+         P +  P   R H    Q +       +SDP+   I 
Sbjct: 609 -------------SKLKSTYTDKLPERIDPDTGRVHTSYHQAVASTGRLSSSDPNLQNIP 655

Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R   +A  G++LV AD + IE R++A ++G+   L+AF  G+D++  T A 
Sbjct: 656 IRTEEGRRIRQAFVAPSGRRLVAADYSQIELRIMAHLSGDAGLLRAFAEGQDIHRATAAE 715

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   QV+ +QR   K +   L Y   A     +A   G+        V    A    
Sbjct: 716 VFGVGLDQVSGEQRRAAKAINFGLIYGMSAF---GLARQLGIERGDAQDYVDRYFARYP- 771

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                  +   E+  E A +  ++ T   R +      ++R  ++  +  +        G
Sbjct: 772 -----GVKDYMESTREKARDLGYVETLFGR-RLYLPDINARNGQIRAQAERVAINAPMQG 825

Query: 536 KAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLV 569
            A    KR  + +  ++++ +   +++L     LV
Sbjct: 826 TAADIIKRAMIQVDQWIRESRIPAVMILQVHDELV 860


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--------PSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMAPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLL 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRTHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
 gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
          Length = 952

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/589 (16%), Positives = 186/589 (31%), Gaps = 91/589 (15%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDP--VMPQVLKEALENTDV 66
            ID    G     E +   L    F D   +          D    +    +   EN + 
Sbjct: 382 SIDTETTGT----EPMEAELVGMSFSDAENQAYYVPVPANRDEALKIVNEFRPLYENENS 437

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKM 123
             V  N  ++  VL+   N  + +   +   +LA     P     +  + E       + 
Sbjct: 438 MKVGQNIKYDMIVLQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIYLH--YQT 492

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179
               ELI    K + +     R+ P           Y   D  VT ++   LE       
Sbjct: 493 IHIDELIGAKGKNQKN----MRDLPPED-----VYRYACEDADVTLKLKNVLEKELKEHA 543

Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  L  +   I   G  +D       ++   +   ++++E+ +L  G   + 
Sbjct: 544 AEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALAGGETFNI 603

Query: 234 RCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +++   LF     +     T+T    T + VL S +       ++            
Sbjct: 604 GSPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILE---------- 653

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                + G  +         P    PR  R H   +Q +T    
Sbjct: 654 ---------------------YRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAVTATGR 692

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +S+P+   I         +R   I  +G +   AD + IE R++A ++ ++  + AF 
Sbjct: 693 LSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMIDAFL 752

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +G D++  T A+ + V    VT D R   K     + Y         +A    +      
Sbjct: 753 SGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVF---GLAERMNVPRQEAK 809

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L+        + +     +   +   + A E+ ++ T   R K+     +SR + +   
Sbjct: 810 ELIDG------YFETYPQVKEYMDRSIQVARENGYVETIFHR-KRFLPDINSRNAVVRGY 862

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570
             +        G A    K   + L+Y +   NNL   ++L     L +
Sbjct: 863 AERNAINAPIQGSAADIIK-VAMSLIYQRLQSNNLKAKMILQVHDELNF 910


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/639 (17%), Positives = 200/639 (31%), Gaps = 150/639 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFN-----LDIPIHRWICTLVLARSNGLPSALKA 111
           LK  LE+  +  +A N  ++  V++          D  +  ++      R    P + + 
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFDDTMLISYVLDAGTGRHGMDPLSERW 511

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +G            GK  +                             Y   D  VT  +
Sbjct: 512 LGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVTLRL 554

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++ L+P  + E          + L  +   + +RG  VD  +   L+  +       + E
Sbjct: 555 WQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDE 614

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQV 276
           + +L  G   +    ++L   LF + GL     T+T    T  +VL        P   ++
Sbjct: 615 IYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLPRKI 673

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + R                                 ++         P    P+  R H
Sbjct: 674 VDWRQL-------------------------------TKLKSTYTDALPGFINPQTKRVH 702

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                  T      +SDP+   I         +R+  IA  G KL+ AD + IE RVLA 
Sbjct: 703 TSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAH 762

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A     +
Sbjct: 763 VADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF---GL 819

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A+   +        ++T      +E       +M+                     KA+ 
Sbjct: 820 ANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------KAFA 855

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++H  V  ++                    +R   P +             P  R+    
Sbjct: 856 REHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF--- 884

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
              N R+ +N   +         G   + I +A+ R    E  +        ++L VHDE
Sbjct: 885 ---NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQVHDE 929

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           ++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 930 LIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/655 (16%), Positives = 189/655 (28%), Gaps = 151/655 (23%)

Query: 46   DCVHDPVMPQVL---------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
            D   + ++P  L         K  LE+  V  V  N  ++  VL       I I  +  T
Sbjct: 470  DLFGEGLLPDQLPWDAVRARLKPLLEDPAVLKVGQNVKYDWLVLVRH---GIEIQPYDDT 526

Query: 97   LVLARSNGL-PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            ++++        +      A +    +     ++                     R    
Sbjct: 527  MLISYVLDAGKGSHGMDELARRHLGHQPITFADV----------TGTGRAKVTFDRVPLD 576

Query: 156  LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205
                Y   D  VT  +++ ++P  + E            L  +   +   G  VD  +  
Sbjct: 577  KATAYAAEDADVTLRLWRLMKPRLAAEHRATVYETLERPLVPVLARMEREGIRVDRDMLS 636

Query: 206  TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261
             L+        +L+ E++ +  G   S    +++   LF + GL     T +    T   
Sbjct: 637  RLSGDFSQSLARLEAEIQEMA-GETFSVSSPKQIGDILFGKLGLPGAKKTPSGQWATPAT 695

Query: 262  VLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            +L        P   ++   R                                 S+     
Sbjct: 696  LLEELATQGHPLPRKILEWRQL-------------------------------SKLKSTY 724

Query: 321  GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375
                         R H       T      +SDP+   I         +R   +A  G +
Sbjct: 725  TDSLQEHAERESDRVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADAGHQ 784

Query: 376  LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            L+ AD + IE R+LA MA      +AF  G D++  T +  F V   ++T D R   K +
Sbjct: 785  LISADYSQIELRLLAHMADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTI 844

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
               + Y   A     +A   G+     +                                
Sbjct: 845  NFGIIYGISAF---GLADRLGIPQGEASAF------------------------------ 871

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                        K + ++   +     +  +A                         +DK
Sbjct: 872  -----------IKQYFERFPGIRAYIEDTKKA------------------------CRDK 896

Query: 556  NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
              +  +   GR   Y  + +N      +  +        G   + I +A+ R    EG +
Sbjct: 897  GYVTTLF--GRVCHYPQIRSNNPQERASVERQAINAPIQGTAADIIRRAMVR---MEGAL 951

Query: 616  NATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667
                    ++L VHDE+V E P  +   A  ++  +M   P  A    +PL  E 
Sbjct: 952  AGAGLTTRMLLQVHDELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEA 1006


>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6]
 gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
          Length = 951

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 114/620 (18%), Positives = 206/620 (33%), Gaps = 140/620 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEA 115
           L     + +    AHN+ F+  +L     + I +      T++ A   G  + LK +   
Sbjct: 415 LGPFFADPNKAKYAHNAKFDIEML---LGVGIEVQGLAFDTMIAAALLGKRAGLKDLAFY 471

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                  M   ++LI R  K  +            +        Y   D  +T  +   L
Sbjct: 472 ELQLPDPMTPIEDLIGRGTKQIS----------FAQVPIERATPYAAADADMTLRLVHAL 521

Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           EP  +            E  L ++   +   G  +D      L Q +      ++QE+  
Sbjct: 522 EPQLATTPKLHDLYRRLELPLVHVLVQMEQAGIALDKPYIEYLGQRMGTRIAAIEQEIYQ 581

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +  G   +    ++L   LF + GL  E +  T   +  S    +T   ++    R    
Sbjct: 582 IAEG-PFNINSSDQLSDILFGKIGLSTEGVERTAKTKKYS----ITADTLERLRER---- 632

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                         ++ G     L++   S+         P    PR  R H   +Q+  
Sbjct: 633 --------------DTSGICERILEYRRLSKLKSTYVDALPALVNPRTGRVHTTYNQVGA 678

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   +A+ G + + AD + IE RVLA++  +   +
Sbjct: 679 ATGRLSSNDPNLQNIPVRTQEGREIRRGFVAAPGHRFIAADYSQIELRVLAYITKDPNLV 738

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G+D++  T A+ F VA  QV K+QR I K +   + Y  G  AF  +A  T    
Sbjct: 739 RAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIY--GISAF-GLAQRT---- 791

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                    M  +  +  I  LF                 R   
Sbjct: 792 ------------------------EMGRSEAQDLINSLFT----------------RFPG 811

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           + + +++  EQ           +   V      + +       P  +S   R     R  
Sbjct: 812 IRDYINRTLEQ----------GQTTGVVQTIFGRQRAM-----PELQSRGPRRAAAEREA 856

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIV 633
           +N                    +Q  + DI+   M+   +A         ++L VHDE++
Sbjct: 857 INAP------------------IQGTAADIMKIAMIKMARALSERGLRTRLLLQVHDELI 898

Query: 634 CETPDTD-EFNASMLYHLMT 652
            E P+ +    A ++  +M 
Sbjct: 899 LEAPEEEVALVAELVREVMA 918


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 108/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE R+
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRI 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
 gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
 gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
 gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
 gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
          Length = 930

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/550 (15%), Positives = 177/550 (32%), Gaps = 74/550 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF +  L +         +T + VL            +  +R 
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLELPVLQKTPKGAPSTNEEVLEELSYSHELPKILVKHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P     +  R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG  +V AD + IE R++A ++G+Q
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRHIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A     ++   G
Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +      + +   + F   ++E        +   G             +S 
Sbjct: 782 ISRADAQKYMD--LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRL-----YLPDINSS 834

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +       +        G A    KR  + L  + +   ++ +++     LV+      
Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPDIEMIMQVHDELVFEVRSEK 894

Query: 577 RSYLNTTTRQ 586
            ++     +Q
Sbjct: 895 VAFFREQIKQ 904


>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
 gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
          Length = 906

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 110/593 (18%), Positives = 192/593 (32%), Gaps = 90/593 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMP--------QV 56
           D ET S +D  +           VI  +F  +          HD     P        + 
Sbjct: 333 DTET-SSLDYMRA---------EVIGLSFAVEPGAAAYVPLAHDYPGAPPQLDRAMVLER 382

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           L+  LE+     +  +  ++  VL    N  I +       +L     N   +       
Sbjct: 383 LRPLLEDPGKAKLGQHLKYDANVL---LNHGIMLRGIRHDTMLESYVLNSTATRHDMDSL 439

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----RE 170
           A +   +K    +++  +  K            P  R +      Y   D  VT    R 
Sbjct: 440 AERYLDRKTLHYEDVAGKGAKQ----------IPFARVSVEDACRYAAEDADVTLCLHRA 489

Query: 171 IFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           ++ RLE +        + E  L  +   I   G  VDV      ++ ++    +++ E  
Sbjct: 490 LWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSRELERRMAEVEAEAR 549

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           ++  G   +    ++++T L+ + GL +   T T       S  +   +  ++       
Sbjct: 550 AVA-GETFNLGSPKQIQTILYDKLGLPVIKKTPTGQPSTDESVLQDLAETFELP------ 602

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                R  L++   S+         P Q  P   R H    Q +
Sbjct: 603 ---------------------RLILEYRSLSKLKSTYTDKLPHQVNPVSGRVHTSYHQAV 641

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                  +SDP+   I         +R   +A  G KL+ AD + IE R++A ++G+   
Sbjct: 642 AATGRLSSSDPNLQNIPVRTEEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLSGDANL 701

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F VA  +VT  QR   K +   L Y   A     +A   G+ 
Sbjct: 702 LAAFAEDADVHRATAAEVFGVALEEVTSSQRRSAKAINFGLIYGMSAF---GLAKQLGIQ 758

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +    A           R   +   E A E  ++ T   R         SR  
Sbjct: 759 QKLAQGYIDLYFARYP------GVRAYMDRTRESARELGYVETLFGRRLHV-PDIQSRNG 811

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           +      +        G A    KR  + L  +++     L +++     LV+
Sbjct: 812 QRRQYAERTAINAPMQGTAADIIKRAMIALDAWIESSGAPLRMIMQVHDELVF 864


>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
 gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
          Length = 970

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 110/643 (17%), Positives = 208/643 (32%), Gaps = 134/643 (20%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106
               +   L+  LE+ +   V  N+ F+R + K      I +   +   +LA     P  
Sbjct: 426 RKEQVFDRLQSILESNNYPKVFQNTKFDRLIFKHQ---GINLDGVVLDTMLASYVLHPEK 482

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L  + E   L      + K+L               + +           EYC  D 
Sbjct: 483 SHKLSELCEQY-LEGITSLDYKDL------------GIGKKQTIADLDIETVAEYCGMDA 529

Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             T  + + L+            L   EQ L  +   + D G  +D      L++ ++  
Sbjct: 530 YATFLLVEPLKNELKPLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQH 589

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L++       G   +    ++L   LF +  L+ +   +T                 
Sbjct: 590 LLSLEENAYQ-AAGEKFNLGSPKQLGHILFEKLELNRKKSRKT----------------- 631

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
                     ++     +  +E +  D   +   L++   S+         P        
Sbjct: 632 ----------KTGYSTDHATLEKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDKIDQ 681

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q +T      +S+P+   I      S  +R   I  +   LV AD + IE R+
Sbjct: 682 RIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQQDWLLVSADYSQIELRI 741

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ EQ  L A++  +D++  T    F+    ++T  +R +GK +   + Y  G++ F
Sbjct: 742 LAHLSQEQVLLNAYKNADDVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQRF 799

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            + A  + +    F      N   + +    ++   M++    +                
Sbjct: 800 AREAGVSAVEGKEF-----INKYRQRYAKVFDYLESMKKEAIANG--------------- 839

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                                        I+ R+R      Y     +NL       R  
Sbjct: 840 -------------------------YVTTILGRRR------YFNFFDDNLYRF----RGH 864

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI 624
             +++  N+  +N    QL R            +Q  S DI+   M+           ++
Sbjct: 865 DPQNIDLNKININYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANL 918

Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           +L VHDE+V E P  + E     +   M +  +    +PL  E
Sbjct: 919 LLQVHDELVFEIPHQEWEELEDKIKETMENAVT--LTVPLVVE 959


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTDSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 95/600 (15%), Positives = 193/600 (32%), Gaps = 94/600 (15%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTI 68
            +D    G         ++  +F F ++         +      + + LK  +EN     
Sbjct: 385 SLDTETTGTDPI--TAELVGMSFSFAENQAFYVPVPANREEALAIVKKLKPIIENEKTLK 442

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124
           +  N  ++  VL    N  + +   +   ++A     P     +  + E  LK  + K+E
Sbjct: 443 IGQNIKYDMLVLG---NYGVEVRGPMFDTMIAHYVLQPELHHGMDYLAEVYLKYETIKIE 499

Query: 125 EGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRLEP------ 177
           E           +       R+  P          +Y   D  VT ++ K LE       
Sbjct: 500 E-------LIGPKGKNQKNMRDLSPT------SVYKYACEDADVTLKLKKVLEKELIENN 546

Query: 178 ----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                 + E  L  +   +   G  +D       +Q       +L++E+  L  G+  + 
Sbjct: 547 VNELFQTIEMPLVPVLAYMERNGVRIDTEALKETSQHFTARMKQLEEEVHQLA-GMEFNI 605

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTC-------QRVLSSNKKLTPQAIQVFNNRMRASRS 286
              +++   LF    L + D  + T        + VL S +       ++  +R      
Sbjct: 606 ASPKQVGEVLFDR--LKITDKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------ 657

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                    G  +         P    P+    H   +Q +T  
Sbjct: 658 -------------------------GLKKLLGTYIDALPLLINPKTGHIHTSFNQTVTAT 692

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   I  EG +   AD + IE R++A ++G+   ++A
Sbjct: 693 GRLSSSNPNLQNIPIRNEDGKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEA 752

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+ G+D++  T A+ +      VT++QR+  K     + Y         +A    +    
Sbjct: 753 FQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVF---GLAERLNIERKE 809

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              L+        + +     +   +     A E  +I T  +R K+     +SR + + 
Sbjct: 810 AKELIDG------YFENYPHVKEYMDQSIRLAQEKGYIETIFKR-KRYLPDINSRNAVVR 862

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580
               +        G A    K   + +     ++     ++L     L +  V   +  +
Sbjct: 863 GYAERNAINAPIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDELNFSVVPEEKEKV 922


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/634 (15%), Positives = 197/634 (31%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN ++  V  N  ++ TV     N  I +       +L + +            
Sbjct: 439 QLKPLLENVEIKKVGQNIKYDLTV---FANHGIELQGVAFDTMLESYTLNSTGRHNMDEL 495

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +++  +     T + +          A     EY   D  +T ++ ++
Sbjct: 496 AERYLDHKTIAFEDIAGKGKNQLTFDKI----------AIETATEYAAEDADITMKLHQQ 545

Query: 175 L-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L           +  +  E  L  +   +   G  +D       ++ ++    +++  + 
Sbjct: 546 LITSLAKTPSLIKLFNEIEMPLVNVLARVEQNGVLIDSDKLLAQSKEMEQRLAEVEIAVH 605

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +   G   +    ++L+  LF +  L +   T            +   Q   +    +  
Sbjct: 606 T-AAGQAFNLASTKQLQEILFEKLALPVLKKTPKGAPSTNEEVLEQLAQQGHLVPKLLSE 664

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                            S+         P        R H    Q +
Sbjct: 665 HR--------------------------ALSKLKSTYTDKLPKMINQHTGRVHTSYHQAV 698

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA +G K+V AD + IE R++A +A ++  
Sbjct: 699 TTTGRLSSSDPNLQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 758

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F ++ A+VT +QR   K +   L Y         +A+   ++
Sbjct: 759 ITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLIYGMSDF---GLANQLAIS 815

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +     +                                           + Q++  V 
Sbjct: 816 RDEAKEYM-----------------------------------------ARYFQRYPNVQ 834

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ ++   +++     +  +R  +P +                     R     R 
Sbjct: 835 QFMRDIRESA--SVKGYVETLFGRRLYLPEIKSNN---------------AIRRKAAERL 877

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
            +N                     Q  + DI+   M++  K         +++ VHDE++
Sbjct: 878 AINAPM------------------QGTAADIIKIAMISIDKQIRADQNIKMIMQVHDELI 919

Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E   +  E+   ++   M      A  +PL AE
Sbjct: 920 FEVKQECIEYYTGLIKTEMEKAI--AMKVPLIAE 951


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/544 (16%), Positives = 180/544 (33%), Gaps = 72/544 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70
           D    G+     D  ++  +F  +                  +  + K  LE+  +  + 
Sbjct: 362 DTETTGLDALVAD--IVGLSFAIEKGKAYYVPTPDSREQALEIINIFKPILEDPAIQKIG 419

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKEL 129
            N  ++  +L      D+ +   +   +LA     P         A            +L
Sbjct: 420 QNIKYDILLLSRY---DVKVKGALFDTMLAHYLIDPDTRHGMDVLAENYLGYIPVSITKL 476

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181
           I    KG+    + D           L  EY   D  +T ++ ++ EPL  +        
Sbjct: 477 IGE--KGKKQGNMRD-------VEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQ 527

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y+   I   G  +DV +    ++ ++ +   L+  +     G+  +    ++L
Sbjct: 528 EVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEKA-GVKFNIASPKQL 586

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF +                     +L P+A +    + +     +L L    + + 
Sbjct: 587 GEVLFDKL--------------------QLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQ 626

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   L F    +         P    P     H   +Q +       +++P+   I
Sbjct: 627 D------ILDFRQLQKLKSTYVDALPSLINPNTGLIHTSYNQAVAATGRLSSTNPNLQNI 680

Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    VR   I  SE   ++ AD + IE R++A ++ +   L+AF+ G D++  T 
Sbjct: 681 PIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATA 740

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A+ + +   +V+ DQR   K +   + Y   A    +   + G+     A ++       
Sbjct: 741 AKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQ---SLGIPRREAADIID------ 791

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
           ++    +  R         A E+ F+ T  +R ++  R  +S    +     +       
Sbjct: 792 QYFQQYSGIRDYMSKAIASAKENGFVETILKR-RRYLRDINSANMTVRGFAERNAINAPI 850

Query: 534 NGKA 537
            G A
Sbjct: 851 QGSA 854


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/563 (17%), Positives = 186/563 (33%), Gaps = 87/563 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D     + +Y  D  ++  +F  +          HD            + + LK  LE+ 
Sbjct: 334 DTETTSL-RYM-DAEIVGVSFAVEPGKAAYVPLGHDYMGAPEQLDRDSVLEQLKPLLEDP 391

Query: 65  DVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
               V  N  +++ VL      L+      +    +  S G    + ++     L  + +
Sbjct: 392 KHKKVGQNLKYDKNVLANHDIQLEGIAEDTMVESYVLNSVGTRHDMDSLARTY-LDEETI 450

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179
              + +  +  K  T   +               G Y   D  +T  + + L P      
Sbjct: 451 TY-ESIAGKGAKQLTFNQI----------DLESAGPYAAEDADITLRLHQTLAPRLKDTG 499

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    +  L  +   +  RG  +  +     +Q +     +L++E   +  G   +
Sbjct: 500 KLESVYREIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEKEAHEVA-GEAFN 558

Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               ++L+  L+ + GL +   T      T + VL            +  +R        
Sbjct: 559 LGSTKQLQAILYDKLGLRVIKKTPKGAPSTAEPVLQELAHEHELPRLIVEHRSL------ 612

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                    S+         P     R  R H    Q +T    
Sbjct: 613 -------------------------SKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGR 647

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +S+P+   I         +R   IA +G KL+ AD + IE R++A ++G++  L AFE
Sbjct: 648 LSSSEPNLQNIPIRTQEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHLSGDRGLLTAFE 707

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++  T A  F V   +VT DQR   K +   L Y   A     ++    ++  T  
Sbjct: 708 HGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIYGMSAF---GLSRQLEVDRKTAQ 764

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +        +E      ++M +N  + A +D ++ T   R +    + ++R  +L   
Sbjct: 765 EYID-----RYFERYPGVLKYM-DNIRKQAHDDGYVETLYGR-RLYLPEINARNKQLQQA 817

Query: 524 LHQAFEQTIENGKAIIARKRRDV 546
             +        G A    KR  +
Sbjct: 818 AERTAINAPMQGTAADIIKRAMI 840


>gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
          Length = 937

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 108/578 (18%), Positives = 187/578 (32%), Gaps = 102/578 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 352 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 458

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 459 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFA 505

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 506 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 565

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 566 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 624

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 625 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 653

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 654 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 713

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 714 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY-- 771

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +    A               +   E A    F+ T   R + 
Sbjct: 772 -GLAKSLGIDNISAKNFIDRYFARYP------GVAEYMQRTKEQAAAQGFVETLFGR-RL 823

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                H++ +       +A       G A    KR  +
Sbjct: 824 YLPDIHNKNANARAGAERAAINAPMQGTASDLIKRAMI 861


>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
 gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
          Length = 908

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 123/698 (17%), Positives = 219/698 (31%), Gaps = 175/698 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PV-ELWDCVHDPVMPQVLKE 59
           +D ET S   L             ++  +   D       PV    +   + +M   + E
Sbjct: 336 LDTETNSLDQLKT----------RLVGISLSTDIGKAWYIPVAHQVELGCNQLMKAEVLE 385

Query: 60  A----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
           A    LE+   T +  N+ ++  V     N  I +      T+VLA        +     
Sbjct: 386 AMRSWLESEQKTKILQNAKYDMHV---FANEGIVLKGIKHDTMVLAYVIDTNQRVGLEAL 442

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +LK  ++K    +E+  +  K  T + +                +Y   D   T  +   
Sbjct: 443 SLKYLNRKGLSYEEICGKGAKAITFDYV----------PLDQATQYACEDADFTFHLLTE 492

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L P              E ++  +   +   G  +D +   + ++I+    +KL+ E+ +
Sbjct: 493 LLPKLEGFEGLKFIYDLEMQVLQVLFDMERVGVLIDSSKLLSQSEIISCRLSKLESEIFN 552

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L   LF +  L  +  T T      +  L       P A+ +   R
Sbjct: 553 LA-GEEFNINSPKQLSEILFTKLKLETQGKTRTGVISTNEDALEKLALDHPIAVHLLEYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+         P        R H    
Sbjct: 612 SL-------------------------------SKLKSTYTDKLPTMINKVTGRVHTVFS 640

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q         + DP+   I         VR   +A +G KL+ AD + +E R++A ++ +
Sbjct: 641 QTTVLSGRLSSFDPNLQNIPIRNEDGRQVRQAFVAEDGFKLMSADYSQVELRLMAHISND 700

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  LKAF+ G D++ +T +  F V  ++V   QR   K +   L Y  GA A    A+  
Sbjct: 701 EGMLKAFKEGADIHRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMGAFAL---ANNL 757

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++  T  + +                                             +   
Sbjct: 758 GISRETAQNYI--------------------------------------------YKYFD 773

Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           R  ++   +     Q  ++G    I  +R  +P +   K                 R   
Sbjct: 774 RFPKVRKFMDDIKIQASQDGYVETIYGRRIYIPGIQDSKGA---------------RKAA 818

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
             R  +N                    VQ  + DI+   M++  K          I+L V
Sbjct: 819 LERVAINAP------------------VQGSAADIIKMAMISVHKWISQNKLNSRIILQV 860

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
           HDE+V E  +++ E     L  LM         +PL+A
Sbjct: 861 HDELVLEVHESEIEILKLKLPKLMEDVAK--LDVPLEA 896


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/594 (16%), Positives = 193/594 (32%), Gaps = 89/594 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLK 58
            L  D ET S            A +  ++  +F +            D      + + LK
Sbjct: 369 QLCFDTETTSVN----------AMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQLK 418

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
              +N  +  +  N  ++  +LK   N D+ +   +   +LA     P    ++     L
Sbjct: 419 PVFQNEKILKIGQNIKYDLLILK---NYDVEVKGKLYDTMLAHYLIEPEGKHSMD---WL 472

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           + Q +      I      +       R             EY   D  +T ++ ++L+P 
Sbjct: 473 AEQYLNYQPVSITELIGKKGKNQGNMR-----DVDVDQVTEYASEDADITLQLKEKLDPF 527

Query: 179 S----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L  +   +   G  +D      ++  ++ E  +++ ++  +  G
Sbjct: 528 LKENLLEKLFYEVENPLINVLTEMEFEGIRIDTKSLAEMSISLEKESKEIENKVYEIA-G 586

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +  +    ++L   LF +  L      T+T    T + +LS        A          
Sbjct: 587 VRFNLASPKQLGDVLFEKLKLDPKAKKTKTGQYATGEEILSKLANEHEIA---------- 636

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                R  L F    +         P     +  + H   +Q +
Sbjct: 637 ---------------------RAILDFRQMVKLKSTYVDALPTMINSKTGKIHTTYNQFV 675

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
                  + +P+   I         +R   +   E   L+ AD + IE R++A  +G++ 
Sbjct: 676 AATGRLSSINPNLQNIPIRTERGREIRKAFVPRDENHILLAADYSQIELRIMAAFSGDES 735

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF+ G D++ TT A+ F V   +VT D R   K     + Y   A    +      +
Sbjct: 736 MIEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANFGIIYGISAFGLSQ---RLSI 792

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +      ++        +       +   +   E A  D ++ T   R ++  R  +SR 
Sbjct: 793 SRTEAKEIIDA------YFKEFPAVKEYMDRAIEKARNDEYVETLLGR-RRYLRDINSRN 845

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570
           + +     +        G A    K   + +  +MKK+     ++L     LV+
Sbjct: 846 ATMRGFAERNAINAPIQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDELVF 899


>gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
 gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
          Length = 983

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 124/713 (17%), Positives = 218/713 (30%), Gaps = 187/713 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 398 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  L N  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 448 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 504

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 505 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 551

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 552 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 611

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 612 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 671 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 700 RVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRI 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 760 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 818 -GLAKSLGIDNLSAKNFID----------------------------------------- 835

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 836 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 877

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------- 617
                 G  R+ +N                     Q  + D++   M++           
Sbjct: 878 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSECEAS 919

Query: 618 ---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                    +++ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 920 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 972


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 116/705 (16%), Positives = 213/705 (30%), Gaps = 178/705 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDP--VMPQVL 57
             L +D ET S   +             ++  +F  ++            +    +  + 
Sbjct: 348 KILSLDTETTSTNAIE----------AELVGLSFAVEERKAFYVAIPANREEALKIVAIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           K   E+ ++  V  N  ++  VL+      + +   +   ++A     P     +  + E
Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVLRHY---GVEVAGPMFDTMIAHYLLQPELRHNMDYMAE 454

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172
             L   +  +E   ELI              RN+ N R+       EY   D  +T  + 
Sbjct: 455 VYLGYRTVHIE---ELI----------GPRGRNQKNMRDLSPTDIYEYACEDADITLRLK 501

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             LEP   +          E  L  +   +   G C+D    H  +++ +   T ++Q +
Sbjct: 502 NVLEPKLDEAGVARLFHDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTTIEQHI 561

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
             L  G   +     ++   LF +   +     T+T    T + VL   +  +P   ++ 
Sbjct: 562 YELA-GEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEIL 620

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           + G  +         P    PR  R H 
Sbjct: 621 -------------------------------NYRGLKKLLSTYVDALPKLINPRTGRIHT 649

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +Q +T      +SDP+   I         +R C I   G     AD + IE R++A +
Sbjct: 650 SFNQTVTATGRLSSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHL 709

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  ++AF  G D++  T AR ++    +VT  +R   K     + Y         +A
Sbjct: 710 SEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTY---GLA 766

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               ++      L+                                              
Sbjct: 767 QRMDISNGEARDLIDGYFL----------------------------------------- 785

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              RV      + QA E   + G A     RR                 LP   S     
Sbjct: 786 TFPRVEA---YMEQAKETARKQGYAETLFHRRRY---------------LPDINSHNATV 827

Query: 573 VGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625
            G   R+ +N                    +Q    DI+   M+   +          ++
Sbjct: 828 RGFAERNAINAP------------------IQGSEADIIKVAMVRIHRRFKAEGIRSKMI 869

Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
           L VHDE+     P+  E    ++   M    ++   +PL A+ G+
Sbjct: 870 LQVHDELNFSVFPEEKEQVERIVVEEMQG--AYKLRVPLVADAGW 912


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 124/624 (19%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN ++  +  N  ++ TV     N  I +       +L + +            
Sbjct: 427 QLKPILENPEIKKIGQNIKYDLTV---FANHGINVQGVAFDTMLESYTLNSTGRHNMDDL 483

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E + +  +     T + +       +              +         
Sbjct: 484 AERYLGHKTIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQLAQEPA 543

Query: 175 LEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L  L    E  L  +   I   G  +D A     +  ++    +L+QE+ S   G V + 
Sbjct: 544 LVKLFDEIELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVHSEA-GSVFNL 602

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
              ++L+  LF + GL +   T                   +V              L  
Sbjct: 603 ASTKQLQEILFEKLGLPILKKTPKGAASTNE----------EVLEELAMMGHRVPKLL-- 650

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
                         ++  G S+         P     +  R H    Q +T      +SD
Sbjct: 651 --------------IEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYHQAVTATGRLSSSD 696

Query: 354 PDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           P+   I         +R   IA +G K+V AD + IE R++A +A ++  LKAF  G+D+
Sbjct: 697 PNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHLANDKGMLKAFAEGKDI 756

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T +  F V   +VT +QR   K +   L Y         +++  G++          
Sbjct: 757 HRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEF---GLSNQLGISR--------- 804

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                   DA+ +                               ++  V +   ++    
Sbjct: 805 -------ADAKQYMEAYF-------------------------NRYPNVLQFMTDIK--A 830

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           +   +     +  +R  +P +                     R     R  +N       
Sbjct: 831 KAAEKGYVETLLGRRLYLPEIKSSN---------------AMRRKAAERVAINAPM---- 871

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTD-EF 642
                         Q  + DI+   M+   +         +++ VHDE+V E  +   E 
Sbjct: 872 --------------QGTAADIIKIAMIGIDRVIQHSDEIKMIMQVHDELVFEVKEDKVEH 917

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
            ++++   M         +PL AE
Sbjct: 918 YSAVIKAEMEKAIQ--LNVPLIAE 939


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLVQAAAAY 611

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      +E       +M+                     K
Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A+ ++H  V  ++                    +R   P +             P  R+ 
Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
          Length = 930

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 118/656 (17%), Positives = 198/656 (30%), Gaps = 156/656 (23%)

Query: 39  DHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D P +L   W           L+  LE+  V  V  N  ++  V+       I +     
Sbjct: 392 DAPAQLDREWVLAR-------LQPLLEDEKVAKVGQNLKYDIGVMARH---GIILRGVAF 441

Query: 96  TLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
             +L     N +         A +    K    +E+  +     T   +           
Sbjct: 442 DTMLESYVLNSVAGRHDMDSLAARHLDHKTITFEEVAGKGKGQLTFNQI----------P 491

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVA 202
                EY   D  VT  + +RL P+   E             L  +   +   G  +D  
Sbjct: 492 LEQAAEYAAEDADVTLRLHQRLWPMLESEAGPRHVFCDIDMPLVPVLSRMERTGVLIDST 551

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
           +    +Q + V    L+Q+  +L      +    ++L++ LF +  L +   T       
Sbjct: 552 ILGQHSQELAVRLNALEQQAHTLAD-EPFNLSSTKQLQSILFDKQQLPILKKTPGGAPST 610

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
                 L   A Q +                              L +   ++       
Sbjct: 611 NEEV--LVELAEQGYELPQV------------------------ILDYRTLAKLKSTYTD 644

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
             P    P   R H    Q +T      +SDP+   I         +R   IA  G K+V
Sbjct: 645 KLPQMVSPLTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSKIV 704

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  L+AF  G+D++  T A  F +    VT DQR   K +  
Sbjct: 705 AADYSQIELRIMAHLSGDRGLLEAFAAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINF 764

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            L Y   A     +A    +  N                +A+ +     E +P       
Sbjct: 765 GLIYGMSAF---GLARQLNIGRN----------------EAQRYMDLYFERYP------- 798

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                 +   + +  +Q  E G       RR             
Sbjct: 799 ---------------------GVLAYMERTRQQASEQGYVETLDGRR------------- 824

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
             L LP              +  N   R+               +Q  + DI+   M+  
Sbjct: 825 --LYLP------------EINARNAMRRKAAERAA-----INAPMQGTAADIIKRAMIAV 865

Query: 618 TK------AGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
                       +++ VHDE+V E P+   +   S +  LM    S A  +PLK +
Sbjct: 866 DAWLQQSQPQVRMIMQVHDELVFEVPEALVDEVVSHVRTLMEG--SLALAVPLKVD 919


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 102/576 (17%), Positives = 178/576 (30%), Gaps = 88/576 (15%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFE 76
           D  ++  +F  +          HD       + +      LK  LEN  +  V  N  ++
Sbjct: 345 DAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQLSREHVLARLKPLLENDGLKKVGQNLKYD 404

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFC 134
             VL    N DI +       +L         S       A      K    +++  +  
Sbjct: 405 ANVLA---NYDIALKGIAYDTMLESYVHNSTGSRHDMDTLAELHLGHKTIHFEDIAGKGA 461

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQ 183
           K  T   +               G Y   D  +T  + + L P            +  E 
Sbjct: 462 KQLTFNQI----------KLEEAGPYAAEDADITLRLHQALWPKVAEAEGLKTVFNDVEL 511

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   I   G  +D  L   L+        KL++E   L  G   +    ++L T L
Sbjct: 512 PLVSILSRIERNGALLDTKLLGELSLQHGASIVKLEKEAYELA-GEEFNLGSPKQLATIL 570

Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           F +  L +   T      T + V+       P    +  +R                   
Sbjct: 571 FEKMNLPVVKKTAKGAPSTNEEVMQELALDYPLPSVILQHRSL----------------- 613

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                         S+         P     +  R H    Q +       +SDP+   I
Sbjct: 614 --------------SKLKSTYTDKLPTMVNKKTGRVHTSYHQAVAATGRLSSSDPNLQNI 659

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   IA  G K+V AD + IE R++A ++ +    KAF  G D++ +T A
Sbjct: 660 PIKTDEGRRIRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGLQKAFAEGLDVHKSTAA 719

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F  A   V+ +QR   K +   L Y   A     +A    +  N     + T      
Sbjct: 720 EVFGTALENVSSEQRRSAKAINFGLIYGMSAF---GLARQLRIGRNDAQTYIDT------ 770

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           + +          N  + A E  ++ T   R +    + +S          +        
Sbjct: 771 YFERYPGVAEYMANIRKSAAEKGYVETLLGR-RLYLPEINSSNGMRRQAAERVAINAPMQ 829

Query: 535 GKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLV 569
           G A    KR  + +  +++ ++ +  +++     LV
Sbjct: 830 GTAADIIKRAMIDVDAWLQTEQIDARIIMQVHDELV 865


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 116/684 (16%), Positives = 204/684 (29%), Gaps = 148/684 (21%)

Query: 5   FIDFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDPVMPQVLKEAL 61
            +D ET S  PID    GI     +    LF         +   D +    +   L+  +
Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQTKKETPDQLSIEDVFSKLRNWI 443

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+        NS F+R +    FN  + +       +LA                     
Sbjct: 444 EDPKKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN-----------NQEKH 489

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177
            + E    +  F K  + +    +NK            YC  DV +T +I K  +     
Sbjct: 490 GLSEISFRLFGF-KPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKESFSK 548

Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  L  +   +   G  +D+     L++ +      ++ ++  L    
Sbjct: 549 EKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELADES 608

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             +    ++L   LF +  L  +   +T     T   VL            +  +R    
Sbjct: 609 -FNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHR---- 663

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                        S+         P     +  R H   +Q  T
Sbjct: 664 ---------------------------TLSKLLSTYIDALPNLINEKTGRVHTNFNQAAT 696

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S+P+   I      S  +R   +  +  KL+ AD + IE R+LA +A E+  +
Sbjct: 697 ATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILI 756

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   +D++  T    F     +++ D+R +GK +   + Y  G    +K A +TG++ 
Sbjct: 757 NAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGVST 811

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 +      E +     F     E     A+   ++ T   R ++           
Sbjct: 812 PEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE----------- 854

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                           K DKN L  +L                 
Sbjct: 855 -------------------------------FKFDKNGLGRLLGKDPY------------ 871

Query: 580 LNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHD 630
                +   R       L       +Q  S DI+   M+   K          ++L VHD
Sbjct: 872 -EIDLQAARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFTEMNVPAKMLLQVHD 930

Query: 631 EIVCET-PDTDEFNASMLYHLMTS 653
           E++ E  PD+ E    ++   M  
Sbjct: 931 ELLFEVEPDSLEITTKLVKKTMED 954


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
 gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
          Length = 941

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 113/708 (15%), Positives = 211/708 (29%), Gaps = 184/708 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ------ 55
             L ID ET S            AE +   L    F D   + +   + PV P+      
Sbjct: 369 KILSIDTETTS------------AEPMEAELVGMSFSDTENQAY---YVPVPPEREEALK 413

Query: 56  ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109
                +   EN +   V  N  ++  VL+   N  + +   +   +LA     P     +
Sbjct: 414 IVNEFRPLYENENSMKVGQNIKYDILVLQ---NYGVEVKGELFDTMLAHYVLQPELRHNM 470

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L   +  ++E           +       R+ P          +Y   D  +T
Sbjct: 471 DYLAEIYLHYQTIHIDE-------LIGPKGKNQKNMRDLPP-----EEVYKYACEDADIT 518

Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            ++   LE    K          E  L  +   +   G  +D       ++   V   ++
Sbjct: 519 LKLKNVLEEELKKQGVEHLFYEIEMPLVRVLANMESNGVRIDTETLKQTSEHFTVRLQEI 578

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQA 273
           ++E+  L  G   +    +++   LF +  +      T+T    T + VL S +      
Sbjct: 579 EKEIYELA-GETFNIASPKQVGEILFDKLKIIDKAKKTKTGQYVTSEEVLESLRNKHEVI 637

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++                                 + G  +         P    PR  
Sbjct: 638 GKILE-------------------------------YRGLKKLLGTYVDALPLLINPRTG 666

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q +T      +S+P+   I         +R   I  +  +   AD + IE R+
Sbjct: 667 RIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDDCEFFSADYSQIELRI 726

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  + AF +G D++  T A+ + +    VT D R   K     + Y       
Sbjct: 727 MAHLSEDKNMIDAFLSGYDIHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYGISIF-- 784

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A    ++      L                     E +P                  
Sbjct: 785 -GLAERMNVDRKEAKEL----------------IDGYFETYP------------------ 809

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                     ++   + ++ +   E G       R+                 LP   S 
Sbjct: 810 ----------QVREYMDKSIQVAREQGYVETIFHRK---------------RFLPDINS- 843

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622
                       N T R                +Q  + DI+   M          K   
Sbjct: 844 -----------RNATVRGYAERNA-----INAPIQGSAADIIKVAMARIYERFQSYKLKA 887

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
            ++L VHDE+    P+ + EF   ++   M    ++   +PL+A+ G+
Sbjct: 888 KMILQVHDELNFSVPEAEKEFVQQIVIEEMER--AYRMHVPLRADCGW 933


>gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 939

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 122/702 (17%), Positives = 207/702 (29%), Gaps = 179/702 (25%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID     +   A +  ++  +  F           H     P+ L         K  LEN
Sbjct: 357 IDTETTSLD--AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQYVLDRLKPHLEN 414

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAV-GEALKLS 119
             +  +  N  +++ V     N  I ++  +   +LA     + L   L  + G  L L 
Sbjct: 415 PALKKIGQNLKYDQHV---FANYGIALNGIVGDAMLASYIIESHLGHGLDELSGRWLGLE 471

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171
           +   E         C     +            A     EY   D      +        
Sbjct: 472 TITYES-------LCGKGAKQIG------FADVAIGPATEYAAQDADFALRLEAHLRAQM 518

Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             K+LE     E  +  +   +   G  +D A     +  +  E  KL+QE  +   G  
Sbjct: 519 DDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYA-AAGQP 577

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    ++L+  LF + G+  + L +T      T + VL       P    +  NR  A 
Sbjct: 578 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSLA- 636

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P    PR  R H    Q + 
Sbjct: 637 ------------------------------KLKSTYTDKLPEMISPRDKRVHTTYAQAVA 666

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  ++P+   I         VR    A  G  +V AD + IE R++A ++G++  +
Sbjct: 667 ITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     K      L+ 
Sbjct: 727 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 786

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                          K    +  +R   
Sbjct: 787 -----------------------------------------------KNFIDRYFARYPG 799

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRS 578
           +   + +A E     G       RR               L LP  R           R+
Sbjct: 800 VAEYMQRARECAAGQGYVETLFGRR---------------LYLPDIRHTNANIRARAERA 844

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------------AGYDIV 625
            +N                     Q  + D++   M++ ++                 ++
Sbjct: 845 AINAPM------------------QGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLI 886

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P+ + +     L  +M +       +PL AE
Sbjct: 887 MQVHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAE 928


>gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 932

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%)

Query: 33  FAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKA 82
            +F   +         HD    PQ L         K  LE+     V  N  ++ ++L  
Sbjct: 374 VSFAVAEGEAAYVPVAHDYLDAPQQLDRDWALAQLKPILEDAQQAKVGQNLKYDASILAR 433

Query: 83  CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
               DI +       +LA    N +         AL+         +++  +     T  
Sbjct: 434 Y---DINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFN 490

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTR-----------EIFKRLEPLSSKEQELWYLD 189
            +                 Y   D  VT            +  K L      E  L  + 
Sbjct: 491 QI----------DLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVL 540

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             I   G  ++  L    +Q +     +L+++   +  G   +    ++L+T  F +  L
Sbjct: 541 SRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDIA-GQEFNLSSPKQLQTIFFDQMKL 599

Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
            +       T +T + VL       P    +   R                         
Sbjct: 600 PVIKKTPSGTPSTNEEVLQELALDYPLPAVILEYR------------------------- 634

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                 G ++         P    P   R H    Q +T      ++DP+   I      
Sbjct: 635 ------GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 688

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   +A  G K++  D + IE R++A ++G++  L+AF+ G+D++  T A    ++
Sbjct: 689 GRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGIS 748

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             QVT +QR   K +   L Y   A     +A   G+        + T      +E    
Sbjct: 749 IDQVTSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMDT-----YFERYPG 800

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--I 538
             ++M++     A E  ++ T   R +    +  SR         +A       G A  I
Sbjct: 801 VMQYMEDTRST-AAEQGYVETLFGR-RLHLPEITSRNGMRRKAAERAAINAPMQGTAADI 858

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           I +    V      +    + L++     LV+    +  S + +  ++L     
Sbjct: 859 IKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMESAA 912


>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
          Length = 970

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 110/643 (17%), Positives = 208/643 (32%), Gaps = 134/643 (20%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106
               +   L+  LE+ +   V  N+ F+R + K      I +   +   +LA     P  
Sbjct: 426 RKEQVLDRLQSILESNNYPKVFQNTKFDRLIFKHQ---GINLDGVVLDTMLASYVLHPEK 482

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L  + E   L      + K+L               + +           EYC  D 
Sbjct: 483 SHKLSELCEQY-LEGITSLDYKDL------------GIGKKQTIADLDIETVAEYCGMDA 529

Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             T  + + L+            L   EQ L  +   + D G  +D      L++ ++  
Sbjct: 530 YATFLLVEPLKNELKTLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQH 589

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L++       G   +    ++L   LF +  L+ +   +T                 
Sbjct: 590 LLSLEENAYQ-AAGEKFNLGSPKQLGHILFEKLELNRKKSRKT----------------- 631

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
                     ++     +  +E +  D   +   L++   S+         P        
Sbjct: 632 ----------KTGYSTDHATLEKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDKIDQ 681

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q +T      +S+P+   I      S  +R   I  +   LV AD + IE R+
Sbjct: 682 RIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQQDWLLVSADYSQIELRI 741

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ EQ  L A++  +D++  T    F+    ++T  +R +GK +   + Y  G++ F
Sbjct: 742 LAHLSQEQVLLNAYKNADDVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQRF 799

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            + A  + +    F      N   + +    ++   M++    +                
Sbjct: 800 AREAGVSAVEGKEF-----INKYRQRYAKVFDYLESMKKEAIANG--------------- 839

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                                        I+ R+R      Y     +NL       R  
Sbjct: 840 -------------------------YVTTILGRRR------YFNFFDDNLYRF----RGH 864

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI 624
             +++  N+  +N    QL R            +Q  S DI+   M+           ++
Sbjct: 865 DPQNIDLNKININYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANL 918

Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           +L VHDE+V E P  + E     +   M +  +    +PL  E
Sbjct: 919 LLQVHDELVFEIPHQEWEELEDKIKETMENAVT--LTVPLVVE 959


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 95/593 (16%), Positives = 188/593 (31%), Gaps = 86/593 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET S            A +  ++  +F    H         +      +  + 
Sbjct: 348 KILSLDTETTSTN----------AMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K A EN  +  V  N  ++  VL       I +   +   ++A     P           
Sbjct: 398 KPAYENEAILKVGQNIKYDMEVLSRY---GIELKGNLFDTMIAHYLLQPE---------- 444

Query: 118 LSSQKMEEGKELIARFCKGETHE--CLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
                M+   E+  R+      E      + + N R+       EY   D  +T ++   
Sbjct: 445 -LRHNMDYMAEVYLRYQTVHIEELIGPRGKGQKNMRDLAPNDIYEYACEDADITLQLKNI 503

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LEP   +          E  L  +   +   G  +D      +++        L+ ++  
Sbjct: 504 LEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDTKALQEVSESFTKRMNDLEAQIHQ 563

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           L  G   +    +++   LF +  +      T+T                      +   
Sbjct: 564 LA-GESFNVSSPKQVGDILFEKLQIAEKPKKTKTG---------------------QFVT 601

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           S   + K  T  E +         L + G  +         P    P+    H   +Q +
Sbjct: 602 SEEELQKYATGNEIVT------LILDYRGLKKLLGTYVDALPKLINPQTGHIHTSFNQTV 655

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R C I  +G     AD + IE RV+A ++G++  
Sbjct: 656 TATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF+ G D++  T A+ +      VT+D+R   K     + Y         +A   G++
Sbjct: 716 IEAFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITVF---GLAERLGID 772

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 L+        +   +++    ++   E    + F        ++     +S+ +
Sbjct: 773 RGEAKQLID--GYFTTFPQVQSYMEQAKDMAREKGYVETFFHR-----RRYLPDINSQNA 825

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
            +     +        G A    K   + +    K +N    ++L     L +
Sbjct: 826 TVRGFAERNAINAPIQGSAADIIKVAMIRIYERFKRENIQSKMILQVHDELNF 878


>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
 gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
          Length = 932

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%)

Query: 33  FAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKA 82
            +F   +         HD    PQ L         K  LE+     V  N  ++ ++L  
Sbjct: 374 VSFAVAEGEAAYVPVAHDYLDAPQQLDRDWVLAQLKPILEDAQQAKVGQNLKYDASILAR 433

Query: 83  CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
               DI +       +LA    N +         AL+         +++  +     T  
Sbjct: 434 Y---DINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFN 490

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTR-----------EIFKRLEPLSSKEQELWYLD 189
            +                 Y   D  VT            +  K L      E  L  + 
Sbjct: 491 QI----------DLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVL 540

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             I   G  ++  L    +Q +     +L+++   +  G   +    ++L+T  F +  L
Sbjct: 541 SRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDIA-GQEFNLSSPKQLQTIFFDQMKL 599

Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
            +       T +T + VL       P    +   R                         
Sbjct: 600 PVIKKTPSGTPSTNEEVLQELALDYPLPAVILEYR------------------------- 634

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                 G ++         P    P   R H    Q +T      ++DP+   I      
Sbjct: 635 ------GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 688

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   +A  G K++  D + IE R++A ++G++  L+AF+ G+D++  T A    ++
Sbjct: 689 GRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGIS 748

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             QVT +QR   K +   L Y   A     +A   G+        + T      +E    
Sbjct: 749 IDQVTSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMDT-----YFERYPG 800

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--I 538
             ++M++     A E  ++ T   R +    +  SR         +A       G A  I
Sbjct: 801 VMQYMEDTRST-AAEQGYVETLFGR-RLHLPEITSRNGMRRKAAERAAINAPMQGTAADI 858

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           I +    V      +    + L++     LV+    +  S + +  ++L     
Sbjct: 859 IKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMESAA 912


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 115/635 (18%), Positives = 202/635 (31%), Gaps = 141/635 (22%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + D      N+ ++R +L       + +   +   +LA        L+       L  
Sbjct: 453 LASNDHPKALQNAKYDRLIL---LRHGLALEGVVMDTLLADY------LRDAAAKHGLEV 503

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE---- 176
               E K              L  + +     A      YC  DV +TR +  RL     
Sbjct: 504 MAEREFK------ITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLAIRLRAQLE 557

Query: 177 -------PLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  PL  + EQ L  +   +   G  +D+     L+  +     KL+Q+ +    G
Sbjct: 558 NMGAQLLPLLEQVEQPLEPVLALMEATGIRIDLPYLKELSIELGNTLEKLEQQAQE-AAG 616

Query: 229 LVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +  +    ++L   LF   GL+ +    T+T   T   VL   +   P    V  +R+  
Sbjct: 617 VNFNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLVLEHRVL- 675

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                         S+         P        R H + +Q +
Sbjct: 676 ------------------------------SKLRSTYVDALPQLVESETGRVHTDFNQAV 705

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +S+P+   I      S  +R   +  E  KL+ AD + IE R+L  ++GE+  
Sbjct: 706 TATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLLSADYSQIELRILTHLSGEEVL 765

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF  G+D++  T      +   +V++D+R +GK +   + Y  GA   Q+ + +TGL+
Sbjct: 766 QEAFRNGDDVHALTARLL--LDKDEVSEDERRLGKTINFGVIYGMGA---QRFSRSTGLS 820

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +  +   + +     F     E     A+   ++ T   R +           
Sbjct: 821 QAEAKDFL--SRYKQRYAKVFTFL----ELQERLALSKGYVETLLGRRRP---------- 864

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                              D+N L  +L         D+  + +
Sbjct: 865 --------------------------------FHFDRNGLGRLLGKD----PMDIDLDVA 888

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
                  Q  R            +Q  S DI+   M+   +          ++L VHDE+
Sbjct: 889 RRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQQQLTAADLPARLLLQVHDEL 942

Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           V E   T   +   L    M         +PL  E
Sbjct: 943 VLEVDPTALEDVQQLVMQTMEKAVE--LSVPLVVE 975


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 114/698 (16%), Positives = 211/698 (30%), Gaps = 167/698 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE---LWDCVHDPV---MPQ 55
             L +D ET S   +        AE     L    F   P +   +           + +
Sbjct: 348 KILSLDTETTSTNPME-------AE-----LVGLSFAVEPKKAFYVPVPAKHEDAVNLVK 395

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
           + K   EN ++  V  N  ++  VL+   N  I +   +   ++A     P     +  +
Sbjct: 396 IFKPLYENEEIVKVGQNIKYDMEVLR---NYGIELKGPMFDTMIAHYVLQPELRHNMDYM 452

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E     + +    ++LI    K + +  + D +  +          Y   D  +T ++ 
Sbjct: 453 AEV--YLNYQTIHIEKLIGERGKNQKN--MRDLSPTD-------VYLYACEDADITLQLK 501

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             LEP   +          E  L  +   +   G  +D       ++        L+ ++
Sbjct: 502 NALEPKLKEAGVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQI 561

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             L  G   +    +++   LF +  +      T+T                      + 
Sbjct: 562 HELA-GESFNVSSPKQVGDILFGKLQIAEKPKKTKTG---------------------QF 599

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S   + K     E +         L + G  +         P    PR    H   +Q
Sbjct: 600 VTSEEELQKYAAGNEIVT------LILDYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQ 653

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R C I  +G     AD + IE RV+A ++G++
Sbjct: 654 TVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDK 713

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF+ G D++  T A+ +      VT+D+R   K     + Y         +A   G
Sbjct: 714 HMIEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIYGITVF---GLAERLG 770

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++ N    L+                                                  
Sbjct: 771 IDRNEAKQLIDGYFTT-------------------------------------------- 786

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             ++++ + QA     E G       RR                 LP   S         
Sbjct: 787 FPQVYDYMEQAKATAREQGYVETFFHRRRY---------------LPDINS--------- 822

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
               N T R                +Q  + DI+   M+              ++L VHD
Sbjct: 823 ---RNATVRGFAERNA-----INAPIQGSAADIIKVAMIRIYKRFKRENIQSKMILQVHD 874

Query: 631 EIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           E+     P+  E    ++   M +  ++   +PL A+G
Sbjct: 875 ELNFSVLPEEKEQVERIVMEEMQN--AYPLRVPLIADG 910


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 106/630 (16%), Positives = 192/630 (30%), Gaps = 138/630 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEA 115
           LK  L +  V  V HN  ++  V+     L + I  +  T++L+    G           
Sbjct: 404 LKPLLADPAVLKVGHNIKYDMQVMA---GLGLAIQSFDDTMLLSYVLDGASHGHGLDELC 460

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L     +     E+    C    ++  +DR              Y   D  +T  +   L
Sbjct: 461 LLHLGHRNISFAEV----CGSGRNQVTFDR------VPLDKACAYAAEDADMTLRLHGLL 510

Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P            + E+ L  +   +   G  VD      L++      T+L+ E+ +L
Sbjct: 511 KPRLLLERMVSVYETLERPLVPVIAAMERDGIKVDRPQLMALSEDFGRRLTELETEVVAL 570

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L   LF    L     T+T    T   VL     L P   ++ + R 
Sbjct: 571 NNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVLEDLAHLHPLPARLLDWRQ 630

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                           S+           Q  P   R H     
Sbjct: 631 L-------------------------------SKLKGTYTDALVAQINPATGRVHTSYAL 659

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      +SDP+   I         +R   +A  GK+L+ AD + IE R++A +A  +
Sbjct: 660 AATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKRLISADYSQIELRLVAHVAEIE 719

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               AF  G D++  T ++ F V    +    R   K +   + Y         +A+  G
Sbjct: 720 GLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGISPF---GLAAQLG 776

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +                    A+ +       +PE                         
Sbjct: 777 IPQGE----------------AKAYIEAYFARYPE------------------------- 795

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                        +T        AR++  V  ++              GR +    + + 
Sbjct: 796 ------------IRTFMERTKEEAREKGFVTTLF--------------GRKVFTPGIKDK 829

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
              +     +        G   + I +A+ R       + A      ++L VHDE+V E 
Sbjct: 830 NGAMRAFAERAAINGPIQGGAADIIKRAMIR---LPAALVAEGLKARLLLQVHDELVLEA 886

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
           P+ + E    ++  +M +  + +  L ++A
Sbjct: 887 PEDETEATVRVVKRVMEAAATLSVPLLVEA 916


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 105/628 (16%), Positives = 209/628 (33%), Gaps = 132/628 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LEN  V  +  N  ++  V+K     +I +  +  T++L+       AL+A     
Sbjct: 442 LKPILENQAVLKIGQNIKYDWLVMKQY---NIVMCSFDDTMLLS------YALEAGISTH 492

Query: 117 KLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    K   G + I+   K  TH     +     +   +    Y   D  +T  +++ L
Sbjct: 493 GMDVLSKRWLGHKPISY--KDLTHSG--RKIVSFAQVDLKQATLYAAEDADITLRLWQVL 548

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P    +          + L  +   + +RG  VD  +   L+  +      L++E+  L
Sbjct: 549 KPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQL 608

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF + GL     T++      +   +       +         
Sbjct: 609 -VGEKFNIASPKQLGDILFGKMGLLGGAKTKSGQWSTSAQTLEELAAEGHILP------- 660

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  + +   ++         P   LP   R H       T 
Sbjct: 661 -------------------RKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATTL 701

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +S+P+   I         +R   +AS+G  L+ AD + IE R+LA +A      +
Sbjct: 702 TGRLSSSEPNLQNIPVRTAEGRKIRKAFVASKGYLLLSADYSQIELRILAHVADITALKE 761

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T ++ F VA   +T + R   K +   + Y         +AS  G++  
Sbjct: 762 AFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPF---GLASQLGISRK 818

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +  +                                         + + ++   + + 
Sbjct: 819 EASDYI-----------------------------------------QLYFERFPGIEDY 837

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                            I AR    V  ++              GR + Y ++   +S +
Sbjct: 838 ------------MERTKIFARHHGYVETIF--------------GRRIHYPEIKTAKSQI 871

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                +        G   + I +A+   I  E  +   +    ++L VHDE++ E P ++
Sbjct: 872 RAFNERAAINAPIQGSAADIIRRAM---IQMENALEKERLSAKMLLQVHDELIFEVPKSE 928

Query: 641 E-FNASMLYHLM--TSNPSWAKGLPLKA 665
               A ++  +M   + P+ +  +PL+ 
Sbjct: 929 STKTAILIKKVMENATMPALSLSVPLEV 956


>gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
 gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
          Length = 953

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 120/670 (17%), Positives = 224/670 (33%), Gaps = 156/670 (23%)

Query: 36  GFDDHPVEL--WDCVH--DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            + + P +L      H     +P       L+  LE+        N+ F+R +L+     
Sbjct: 390 AWGEEPDQLAYIPLGHEEGEQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRHQ--- 446

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECL 142
            I +   +   +LA     P    +L A+ +  LKL +                 ++  L
Sbjct: 447 GIELAGVVFDTMLASYLLNPSLGHSLDALADRWLKLQT----------------RSYSDL 490

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQT 191
             + K   + A     +YC  DV V + +   L+            L + E  L  +   
Sbjct: 491 VPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAE 550

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           + DRG  +D      L++ +  E  +L+    +L  G   +    ++L   LF + GL++
Sbjct: 551 MEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLA-GDRFNLGSPKQLSELLFEKLGLNV 609

Query: 252 EDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +   +T     T   VL   +   P    +  +R  A   +   ++ L   + +D     
Sbjct: 610 KKSRKTKTGYSTDAAVLEKLQGDHPIIDLILEHRTLAKLKSTY-VDALPSLVAAD----- 663

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
                                      R H + +Q +T      +S+P+   I      S
Sbjct: 664 --------------------------GRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFS 697

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +  EG  L  AD + IE R+LA ++ E   L+A+  G+D++  T +  F+   
Sbjct: 698 RQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR-- 755

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            ++T ++R IGK++   + Y  GA   Q+ A  TG +       +      + +     +
Sbjct: 756 EEITSEERRIGKIINFGVIYGMGA---QRFARETGSSTKEAQGFIDRFY--DRYPRVFTY 810

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            +    +    AI   ++ T   R +                                  
Sbjct: 811 LQ----SLERQAIARGYVETVLGRRR---------------------------------- 832

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                   Y   +       L   R      +  ++   +    QL R            
Sbjct: 833 --------YFDFEDTG----LQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAP------ 874

Query: 602 VQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPS 656
           +Q  S DI+   M+            ++L VHDE+V E P  +  + +  +   M     
Sbjct: 875 IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQAVQ 934

Query: 657 WAKGLPLKAE 666
               +PL  E
Sbjct: 935 --LTVPLAVE 942


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 111/634 (17%), Positives = 188/634 (29%), Gaps = 140/634 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  +AHN  ++  VL        PI   +       +      L  +   L
Sbjct: 470 LKPLLEDDAVLKIAHNMKYDLLVLARYGVDVAPIEDTMLISYTLDTGRNNHGLDEL--TL 527

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRL 175
           K    +      +               RN     R A     EY   D  VT  +++ L
Sbjct: 528 KHLGHENIPFSAVA-----------GSGRNFIGFARVALDRATEYATEDADVTLRLWRAL 576

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P  + E            +      +  RG  +D A+   L+     +  +L+ ++  L
Sbjct: 577 KPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRLSGEFAQDMARLEADIFDL 636

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L   LF + GL     T T    T   VL                  
Sbjct: 637 A-GETFNLGSPKQLGDILFGKMGLPGAKKTATGAWSTSASVLEDLANE------------ 683

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                              +   R  L +   S+         P        R H     
Sbjct: 684 ------------------GNDFARRILDWRQLSKLKSTYTDALPGFVNKETGRVHTSYAL 725

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      +SDP+   I         +R   +AS G  L+ AD + IE R+LA +A   
Sbjct: 726 AATTTGRLSSSDPNLQNIPVRNEAGRKIRKAFVASPGHVLISADYSQIELRLLAHIADIP 785

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              KAF  G D++  T +  F V    +  + R   K +   + Y   A     +A+   
Sbjct: 786 QLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYGISAF---GLANQLS 842

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +        +K                                            +   R
Sbjct: 843 IPREEAGAYIK--------------------------------------------RYFER 858

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              + + +  A ++ +    A+     R      +            S R+         
Sbjct: 859 FPGIRDYME-ATKKLVREKGAVTTIFGRVCHFPRIGSANA-------SDRAFY------E 904

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           R+ +N   +         G   + I +A+ R    +  + +      ++L VHDE+V E 
Sbjct: 905 RAAINAPIQ---------GAAADIIRRAMVR---MDDALASEGLKAQMLLQVHDELVFEA 952

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           P  + E    +   +M   P+ A  L  PLK + 
Sbjct: 953 PKKEAEATIEIARRVMEEAPAPAVQLAVPLKVDA 986


>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
 gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
          Length = 977

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 118/699 (16%), Positives = 197/699 (28%), Gaps = 174/699 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHD-----PVMP---- 54
           ID ET S           +A      L        P +       H+       +P    
Sbjct: 404 IDTETTSK--------DPHAA----RLVGISLAVTPWQGCYIPVGHNYAGVPEQLPLDEV 451

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112
             VLK  LE+     V  N  ++  VL    N  I +   +   +L              
Sbjct: 452 LAVLKPWLESDAQQKVGQNIKYDMHVLA---NHGITLRGVVDDTMLESYVLEAHRTHGMD 508

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A +  ++     +E+  +  K    + +          A  +   Y   D  VT ++ 
Sbjct: 509 ALAGRHLNRTTITYEEVAGKGAKAIGFDQV----------ALDVATPYAAEDADVTLQLH 558

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E     +   +   G  +D       +Q +  +  +L+++
Sbjct: 559 RTLWPAIEASERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQELERQ 618

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              L  G   +    ++L   LF   GL +   T     +T + VL       P    + 
Sbjct: 619 AHELA-GQPFNLGSTKQLGEILFERLGLPVVKKTPAGKPSTDESVLEKLALDYPLPKVLL 677

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                               G ++         P    P+  R H 
Sbjct: 678 QWR-------------------------------GLAKLKSTYTDKLPEMVDPKTGRVHT 706

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +       +SDP+   I         +R   IA  G +++ AD + IE R++A +
Sbjct: 707 TYSQAVAITGRLASSDPNLQNIPVRTPEGRRIREAFIAPPGHQMMSADYSQIELRIMAHI 766

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   LKAF  GED++  T +  F V  A+V  +QR   KV+   L Y   A     +A
Sbjct: 767 SQDAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAKVINFGLIYGMSAF---GLA 823

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +  G+        +    A   +     +    +    E    +   G           +
Sbjct: 824 ANLGIERGAAQAYIDRYFAR--YPGVAAYMERTRAQAREQGYVETVFGRRL-----WLPE 876

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             S          +A       G A    K   +                          
Sbjct: 877 IGSSNMGRRQMAERAAINAPMQGTAADLIKLAMI-------------------------- 910

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                           R    G +L                            + VHDE+
Sbjct: 911 ----------DVHAWLRRENLGARLV---------------------------MQVHDEL 933

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAE 666
           V E PD      + +  L T  P+   G     +PL AE
Sbjct: 934 VLEVPD------AEVERLKTDLPARMAGVAQLSVPLLAE 966


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 107/653 (16%), Positives = 208/653 (31%), Gaps = 144/653 (22%)

Query: 43  ELWDCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           +  +    P +P      +LK  LE+  V  +  N  ++  V++    + +       T+
Sbjct: 430 KAVEDEIGPQLPIDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH-GITMAPFD--DTM 486

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           +++ +    ++L   G   +LS + +          C            +P    A    
Sbjct: 487 LISYALDASASLAGHGMD-ELSERFLGHKPMSYKELC------GSGKGARPIAACAIDKV 539

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTL 207
             Y   D  VT  +++ L+P    E          + L  +   + +RG  VD  +   L
Sbjct: 540 TAYAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDRQILSRL 599

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263
           +     ++  L+ E+  +  G   +    ++L   LF + GL     T++    T  RVL
Sbjct: 600 SGRFAQKQAGLEAEIAEIA-GETFNPGSPKQLGEVLFGKLGLPGGKKTKSGQWSTDVRVL 658

Query: 264 SSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
                   P   ++ + R           +TL   M++ GR+                  
Sbjct: 659 EDLAAEGHPLPRRIVDWRQLTKLKGTYT-DTLPGHMDAQGRI------------------ 699

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
                        H       T      +S+P+   I         +R+  +A  G  LV
Sbjct: 700 -------------HTSYSMASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPAGHSLV 746

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA +A      +AF  G D++  T +  F V    +  + R   K +  
Sbjct: 747 SADYSQIELRILAHIADIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINF 806

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y   A     +A+   +  +     +K       +E       +M            
Sbjct: 807 GIIYGISAF---GLANQLSIPRDEAGTYIK-----RYFERFPGIRDYMDST--------- 849

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                     KA+ ++H  V  L+                                    
Sbjct: 850 ----------KAFAKEHGHVETLF------------------------------------ 863

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR + Y D+ +  + +     +        G   + I +A+ R    E  +  
Sbjct: 864 -------GRRVHYPDIRSPNASVRAFNERAAINAPIQGTAADIIRRAMIR---MEPALAD 913

Query: 618 TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667
                 ++L VHDE++ E  D   +    ++  +M     P     +P++ + 
Sbjct: 914 AGLSARMLLQVHDELIFEVEDDQIDATLPVVRRVMEEAALPVVQLSVPIEVDA 966


>gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425]
 gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425]
          Length = 982

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 103/639 (16%), Positives = 206/639 (32%), Gaps = 136/639 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L+  LE+        N+ ++R VLK    + +     +   +LA     P        
Sbjct: 442 EQLRPLLEDARYPKAFQNTKYDRLVLK-FQGVHL--QGVVFDTMLASYVLNPEG------ 492

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +  L+    +            +++  L ++ +     +      YC  DV  T ++  +
Sbjct: 493 SHNLTDLSRKYLD------ITAQSYTDLVEKGQNLADLSVEAIANYCGLDVYATFQLVPK 546

Query: 175 LEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           L              L + EQ L  +   +   G  +D      L+Q ++ +   L++  
Sbjct: 547 LRADLLDANPKLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERA 606

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVF 277
             L  G   +    ++L   LF +  L ++   +T     T    L   +   P    + 
Sbjct: 607 YGLA-GETFNLGSPKQLSELLFNKLKLDVKKSRKTKLGYSTDAATLEKMQGDHPVIDLIL 665

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R  A                               +         P        R H 
Sbjct: 666 EHRTLA-------------------------------KLKSTYVDALPNLVRSDTGRVHT 694

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           + +Q IT      +S+P+   I      S  +R   I   G  LV AD + IE R+LA +
Sbjct: 695 DFNQAITATGRLSSSNPNLQNIPIRTEFSRQIRKAFIPEPGWMLVTADYSQIELRILAHL 754

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + E   ++A++  +D++  T      +    +  ++R + K++   + Y  GA   Q+ A
Sbjct: 755 SQEPRLVEAYQQHQDVHKLTAQLL--LEKEDINPEERRLAKIINFGVIYGMGA---QRFA 809

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             +G++       +                                           + +
Sbjct: 810 RESGVSFKQAKGFID-----------------------------------------RFYE 828

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V     ++       +   + ++ R+R      Y   D   L   L         +
Sbjct: 829 RYPLVFRYLKQMEGQAI-ALGYVETLLGRRR------YFSFDSRELQ-QLRGKDPDSLAE 880

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----DIVLTV 628
           +  ++  ++   R   R            +Q  S DI+   M+   +        ++L V
Sbjct: 881 LDLSQLKVSQYDRGQLRAAANAP------IQGSSADIIKVAMIKLQQRLQPYQTRLLLQV 934

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P ++ E   S++   M         +PL AE
Sbjct: 935 HDELVFEMPPSEWEPLRSLIQATMAEAVP--LSIPLLAE 971


>gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
          Length = 983

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 121/702 (17%), Positives = 212/702 (30%), Gaps = 179/702 (25%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID     +   A +  ++  +  F           H     P+ L         K  LEN
Sbjct: 401 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGHLKPYLEN 458

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119
             +  +  N  +++ V     N  I ++      +LA     + L   L  + E  L L 
Sbjct: 459 PALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGLDELSERWLGLE 515

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-L 178
           +   E         C     +            A     EY   D      +   L   +
Sbjct: 516 TITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFALRLEAHLRAQM 562

Query: 179 SSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             K+ E++         +   +   G  +D A     +  +  E  KL+QE  +   G  
Sbjct: 563 DEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 621

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    ++L+  LF + G+  + L +T      T + VL       P    +  NR  A 
Sbjct: 622 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA- 680

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P    P+  R H    Q + 
Sbjct: 681 ------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQAVA 710

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +++P+   I         VR    A +G  +V AD + IE R++A ++G++  +
Sbjct: 711 ITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G      +A + G++ 
Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 827

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            +  + +                                             +   R   
Sbjct: 828 LSAKNFID--------------------------------------------RYFDRYPG 843

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578
           +   + +  EQ    G       RR               L LP  R+       G  R+
Sbjct: 844 VAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNKNANARAGAERA 888

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------------TKAGYDIV 625
            +N                     Q  + D++   M++                    ++
Sbjct: 889 AINAPM------------------QGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLI 930

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 931 MQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 972


>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
 gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
          Length = 930

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 93/551 (16%), Positives = 175/551 (31%), Gaps = 76/551 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEA 115
           LK  LEN  +  V  N  ++   L       I +      T++L+              A
Sbjct: 409 LKPILENPVIEKVGQNIKYD---LSIFARNGINVQGVTYDTMLLSYVLDSTGRHNMDDLA 465

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +    +E+  +     T + +                 Y   D  +T ++ + L
Sbjct: 466 KRYLGHQTISFEEIAGKGKGQLTFDQI----------PLEHATTYAAEDADITMKLQQVL 515

Query: 176 -EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            E +S +          E  L  +   +   G  +D     T +  +    T L+Q+   
Sbjct: 516 WEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVLIDSNTLLTQSNKIAERLTALEQQAYE 575

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF + GL +   T      T + VL            +  +R
Sbjct: 576 LA-GQTFNLASTKQLQEILFDKLGLPVLKKTPKGAPSTNEEVLEELAYDHELPKLLVEHR 634

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P        R H    
Sbjct: 635 -------------------------------GLSKLKSTYTDKLPQMINKHTGRVHTSYH 663

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +SDP+   I         +R   I  EG  +V AD + IE R++A ++ +
Sbjct: 664 QAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIPREGFTMVAADYSQIELRIMAHLSKD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           Q  + AF  G+D++ +T A  F +   QVT +QR   K +   L Y   +     ++   
Sbjct: 724 QGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIYGMSSF---GLSRQL 780

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+  N     +      + +   + F   ++E          ++ T  +R +      +S
Sbjct: 781 GIPRNDAQKYMD--LYFQRYPGVQTFMTDIRETAKAQG----YVATLFDR-RLYLPDINS 833

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             +       +        G A    KR  + L        ++ +++     LV+     
Sbjct: 834 SNAIRRKAAERVAINAPMQGTAADIIKRAMIDLDKQIVGNPDIQMIMQVHDELVFEVRSE 893

Query: 576 NRSYLNTTTRQ 586
                +   +Q
Sbjct: 894 KVEEFSQLIKQ 904


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/641 (17%), Positives = 195/641 (30%), Gaps = 154/641 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-A 115
           LK  LE+  +  +A N  ++  V+       + +  +  T++L+ +         + E +
Sbjct: 475 LKPMLEDRGILKIAQNLKYDWLVMTRH---GVDVDPYDDTMLLSYTVDAGKGGNGMDELS 531

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    K    KE+    C        +D+       A      Y   D  VT  ++  L
Sbjct: 532 ERWLGHKPIPFKEV----CGSGKSMITFDK------VAIDKATAYAAEDADVTLRLWLTL 581

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P  +           E+ +  +   +  RG  VD  +   L+         L+ E+  L
Sbjct: 582 KPRLASDHMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGDFAQGAAALESEIYEL 641

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280
             G   +    ++L   LF + GL     T+T    T  +VL        P   ++   R
Sbjct: 642 A-GETFNVGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDLAAEGHPLPSKIVEWR 700

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+         P    P   R H    
Sbjct: 701 QL-------------------------------SKLKSTYTDALPGYINPETKRVHTSYS 729

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              T      +S+P+   I         +R   IA +G+KL+ AD + IE RVLA MA  
Sbjct: 730 LAATTTGRLSSSEPNLQNIPVRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAHMADI 789

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               KAFE G D++  T +  F      +    R   K +   + Y   A     +A+  
Sbjct: 790 PQLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAF---GLANQL 846

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +                                         K + Q+  
Sbjct: 847 GISRGEAGDYI-----------------------------------------KTYFQRFP 865

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            + +    + +           I  RK     +              P+ R+        
Sbjct: 866 GIKDYMEAVKKQV-HADGYVTTIFGRKAHYPEVNTKN----------PNMRAFY------ 908

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
            R+ +N                    +Q  + DIL   M+         K    ++L VH
Sbjct: 909 ERAAINAP------------------IQGSAADILRRAMVRMEDRLTASKLDAQMLLQVH 950

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAK--GLPLKAEG 667
           DE++ E P+   E    ++  +M +    A    +PL+ + 
Sbjct: 951 DELIFEVPEDQVEATIPLIKDVMENACDPALKFSVPLQVDA 991


>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
 gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
          Length = 944

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 108/629 (17%), Positives = 188/629 (29%), Gaps = 136/629 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+     V  +  ++  V     N  I +      T++ +              A ++ 
Sbjct: 418 LEDETRKKVGQHLKYDAHV---FANHGIALRGIAHDTMLQSYVLASHRNHGMDALAERVL 474

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
             K    +E+    C     +  +D        A     EY   D  +T  + + L P  
Sbjct: 475 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 524

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     + Q +   G  VD       +  +     +L+Q+  +L  G
Sbjct: 525 TEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLELEQQAFALA-G 583

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F +  L +   T     +T + VL    +  P    +        
Sbjct: 584 QPFNLNSPKQIGELFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 636

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    F G ++         P    P+  R H    Q   
Sbjct: 637 ------------------------DFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 672

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   +A  G  +V AD + IE R++A ++ ++  +
Sbjct: 673 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLM 732

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A     +AS  G+  
Sbjct: 733 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 789

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKHSRVS 518
           +     +        +       R+M E   + A E  ++ T   R  + W    +    
Sbjct: 790 DAAKLYID-----RYFARYPGVARYMDET-RQVAHERGYVETVFGR--RLWLPDINGGNG 841

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +A       G A    K   +                                
Sbjct: 842 PRRQAAERAAINAPMQGTAADLIKLSML-------------------------------- 869

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                 +         GK                G+   T+    +V+ VHDE+V E P 
Sbjct: 870 ----AVQDWLEGSPNAGK---------------PGVPMRTR----LVMQVHDELVLEVPQ 906

Query: 639 TDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
            +       L  LM    S    +PL AE
Sbjct: 907 DELARVRERLPELMCDVAS--LRVPLVAE 933


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 118/699 (16%), Positives = 217/699 (31%), Gaps = 161/699 (23%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-------------- 60
           D     +  +  ++  +   +G     +           P  L EA              
Sbjct: 391 DTETTALNPFCAELVGLGVCWGEGLQDLAYIPI--GHHPPAELLEAEAACQLPLEAVLKA 448

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L + D      N+ ++R +L       + +   +   +LA        L+      
Sbjct: 449 IAPWLASNDHPKALQNAKYDRLIL---LRHGLALEGVVMDTLLADY------LRDAAAKH 499

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR------- 169
            L      E K              L  + +     A      YC  DV +TR       
Sbjct: 500 GLEVMAEREFK------ITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLALRLR 553

Query: 170 ----EIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
               ++  +L PL  + EQ L  +   +   G  +D+    TL+  +     +L+++   
Sbjct: 554 AQLEDMGAKLLPLLEQVEQPLEPVLALMEATGIRIDLPYLQTLSVELGETLERLEEQARE 613

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQAIQVFNN 279
              G+  +    ++L   LF   GL+ +    T+T   T   VL   +   P    V  +
Sbjct: 614 -AAGVDFNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLVLEH 672

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R+                                S+         P        R H + 
Sbjct: 673 RVL-------------------------------SKLRSTYVDALPQLVESETGRVHTDF 701

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q +T      +S+P+   I      S  +R   +  E  +L+ AD + IE R+L  ++G
Sbjct: 702 NQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWQLLSADYSQIELRILTHLSG 761

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E+   +AF  G+D++  T      +   +V+ D+R +GK +   + Y  GA   Q+ A +
Sbjct: 762 EEVLQEAFRNGDDVHALTARLL--LDKDEVSSDERRLGKTINFGVIYGMGA---QRFARS 816

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           TG++       +  +   + +     F     E     A+ + ++ T   R +       
Sbjct: 817 TGVSQAEAKDFL--SRYKQRYAKVFTFL----ELQERLALSEGYVETLLGRRRP------ 864

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                                  D+N L  +L         D+ 
Sbjct: 865 ------------------------------------FHFDRNGLGRLLGKD----PMDID 884

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
            + +       Q  R            +Q  S DI+   M+   +          ++L V
Sbjct: 885 LDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQEKLTAADLPARLLLQV 938

Query: 629 HDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E  P   E    ++   M         +PL  E
Sbjct: 939 HDELVLEVDPTALEDVQQLVVQTMEKAVE--LSVPLVVE 975


>gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
          Length = 938

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 125/713 (17%), Positives = 218/713 (30%), Gaps = 187/713 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDSMLASYIIESHLGHGL 459

Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + G  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +   R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------- 617
                 G  R+ +N                     Q  + D++   M++           
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSECEAS 874

Query: 618 ---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                    +++ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 927


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 199/624 (31%), Gaps = 106/624 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL------- 57
           ID ET S          KY E   ++  +     +        HD    P+ L       
Sbjct: 342 IDTETTSL---------KYME-AEIVGISLAVAPNEACYIPLAHDYAGAPEQLDRDWVLQ 391

Query: 58  --KEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSAL 109
             K  LE+     V  N  ++  VLK           D  +  ++     ++ N    A 
Sbjct: 392 KMKPLLEDETPKKVGQNLKYDAHVLKNYDIELNGIAHDTMLESYVLNSTASKHNMDDLAK 451

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +G        +  + + +  +  K  T   +               GEY   D  +T 
Sbjct: 452 HYLG-------HECIDFESIAGKGAKQLTFNQIPV----------EQAGEYAAEDADITL 494

Query: 170 EIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L P               E  L  +   +   G  V+    H  +  ++    +L
Sbjct: 495 RLHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNADKLHQQSSEIEQRLQEL 554

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274
           +++   +  G V +    ++L+   F +  L +   T      T + VL           
Sbjct: 555 ERKAHDIA-GEVFNLGSTKQLQAIFFEKLELPVIKKTPKGQPSTAEEVLVELSHDYELPK 613

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R                               G ++         P     +  R
Sbjct: 614 VILEHR-------------------------------GLAKLKNTYTDKLPLMINSKSQR 642

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q +T      +SDP+   I         +R    A EG  LV AD + IE R++
Sbjct: 643 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRKIRQAFEAPEGYTLVAADYSQIELRIM 702

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++G++  L AF+ G+D++  T A    V  A V  +QR   K +   L Y   A    
Sbjct: 703 AHLSGDKGLLDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSAF--- 759

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A   G+  +     +       ++ D     +   E+  E A +  ++ T   R +  
Sbjct: 760 GLARQLGIGRSEAQEYID------KYFDRYPGVKKYMESTRELAAKQGYVETLFGR-RLY 812

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSL 568
             + +SR         +        G A    KR  + +  ++++  +++ +++     L
Sbjct: 813 LPEINSRNGMRRQAAERTAINAPMQGTAADIIKRAMIKMHQWIQESAHDVHMIMQVHDEL 872

Query: 569 VYRDVGNNRSYLNTTTRQLTREYT 592
           ++         ++   + +     
Sbjct: 873 IFEVPDGQLDAVSAEIKSIMEAAA 896



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 577 RSYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
           R YL    +R   R            +Q  + DI+   M+              +++ VH
Sbjct: 810 RLYLPEINSRNGMRRQAAERTAINAPMQGTAADIIKRAMIKMHQWIQESAHDVHMIMQVH 869

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE++ E PD   +  ++ +  +M +       +PL  +
Sbjct: 870 DELIFEVPDGQLDAVSAEIKSIMEAAAD--LDVPLLVD 905


>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
 gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
 gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
          Length = 986

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 115/641 (17%), Positives = 207/641 (32%), Gaps = 134/641 (20%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107
            ++  +L E L N     V  N+ F+R VL       I +   +   +LA     P    
Sbjct: 444 GIIKDLLGEILGNAIYPKVLQNAKFDRRVLAHH---GIELGGVVLDTMLASYVLQPEETH 500

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  +     L    +   K+L               +++          G+YC  D   
Sbjct: 501 NLTDLCRRYNLGLVALSY-KDL------------GLKKDQTIADLPLETAGQYCGLDCYA 547

Query: 168 TREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T  +  +L+            L   EQ L  +   + DRG  +D     TL+Q +     
Sbjct: 548 TYLLASKLQKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLL 607

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            ++        G   +    ++L T LF + GL  +   +T                   
Sbjct: 608 TIETAAYE-AAGESFNLSSPKQLGTILFDKLGLDRKKSRKT------------------- 647

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                   ++     +  +E +  D   +   L+    ++         P     +  R 
Sbjct: 648 --------KTGYSTDHATLEKLQGDHPIIDAILEHRTLAKLKSTYVDALPELVNGQTQRI 699

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H + +Q +T      +S+P+   I      S  +R   +  +   LV AD + IE R+LA
Sbjct: 700 HTDFNQAVTSTGRLSSSNPNLQNIPIRSDFSRQIRRAFLPQKDWLLVSADYSQIELRILA 759

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ E   L+A+   +D++  T    F      +T  +R +GK +   + Y  GA   Q+
Sbjct: 760 HLSQEPVLLQAYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTINFGVIYGMGA---QR 814

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            A  TG++       +        +    ++   M+            +G          
Sbjct: 815 FARETGISAVEGREFIDRYH--RTYAQVFDYLETMKLEAIAKGYVTTIVGR--------- 863

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R+  + V+E   +L          GK +      DV                        
Sbjct: 864 RRYFNFVTEALRQLR---------GKTVTELDLVDVK----------------------- 891

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----DIVL 626
                    +N    QL R            +Q  S DI+   M+   K        ++L
Sbjct: 892 ---------MNYNDAQLLRSAANAP------IQGSSADIIKIAMVKLAKLLESYQTRMLL 936

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            VHDE++ E P  + E  A ++ + M    +    +PL  E
Sbjct: 937 QVHDELIFEMPPEEWEELAPLIQNTMEQ--ALTLSVPLVVE 975


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/682 (17%), Positives = 214/682 (31%), Gaps = 168/682 (24%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENTDVTIVAHNSYFE 76
              ++  +F  ++         HD V  PQ L         K  LE+ +   V  +  ++
Sbjct: 364 QAELVGMSFSIEEGDAAYLPLAHDYVDAPQQLDRSAVLALFKPLLEDKNKAKVGQHLKYD 423

Query: 77  RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
           + VL    N DI +       +L     N + +       A           +++  +  
Sbjct: 424 KNVLA---NYDINLQGIAYDTMLESYVLNSVATRHDMDSLAQYYLGLSTVHFEDIAGKGA 480

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLE--P-----LSSKEQ 183
           K  T   +                +Y   D  +T      I+++L   P     L+  E 
Sbjct: 481 KQLTFNQI----------PLDQAAQYAAEDADITLRLHNHIWQKLHQTPELASVLTEIEV 530

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  +D       +Q +     +L++E+  L  G   +    ++L+  L
Sbjct: 531 PLATVLAKMEQFGVLIDSQKLSQQSQDLATRIMQLEREVHELA-GEEFNLGSTKQLQEIL 589

Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           F +  L +   T      T + VL       P    +   R+                  
Sbjct: 590 FNKLSLPVLKKTPKGAPSTSEEVLQELALTYPLPKLLMEFRVL----------------- 632

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                         S+         P    PR  R H    Q IT      +++P+   I
Sbjct: 633 --------------SKLKNTYTDKLPKMINPRSGRVHTSYHQAITATGRLSSTEPNLQNI 678

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    VR   IA  G K+V AD + IE R++A ++ ++  LKAF  G+D++  T A
Sbjct: 679 PIRTEQGRRVRQAFIARPGYKIVAADYSQIELRIMAHLSQDEGLLKAFSQGKDIHTATAA 738

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             FNV+  +VT +QR   K +   L Y   A     ++    ++                
Sbjct: 739 EVFNVSLTEVTTEQRRNAKAINFGLIYGMSAF---GLSKQLNVSR--------------- 780

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
             DA+++     E +P                             +   +  +     EN
Sbjct: 781 -HDAQHYMDLYFERYP----------------------------GVLKYMEDSRIVAKEN 811

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTY 593
           G       RR               L LP   +    R  G  R+ +N            
Sbjct: 812 GYVSTVFGRR---------------LYLPDINASNGLRRKGAERAAINAPM--------- 847

Query: 594 GGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPD-TDEFNAS 645
                    Q  + DI+ + M+               +++ VHDE++ E  +   E + +
Sbjct: 848 ---------QGTAADIIKKAMLKVDAWIDTLPSDQTRMIMQVHDELIFEIKEQNVENDKN 898

Query: 646 MLYHLMTSNPSWAKGLPLKAEG 667
            +  LM    S    +PL  E 
Sbjct: 899 TIVDLMEKAVS--LDVPLIVEA 918


>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
 gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
          Length = 911

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/588 (17%), Positives = 188/588 (31%), Gaps = 91/588 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D     + +Y  D  V+  +F  +          HD            +   LK  LE+ 
Sbjct: 337 DTETTSL-RYM-DADVVGVSFAIEPGEAAYVPFGHDYMGAPEQLDRDTVLSQLKPLLEDP 394

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               +  N  +++ VL    N  I ++      +L     N + S       A++   ++
Sbjct: 395 KKAKLGQNLKYDKNVLA---NHGINLNGIAEDTMLESYVLNSVGSRHDMDSLAMQYLGEQ 451

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
               + +  +  K  T   +               G Y   D  +T  + + L P   K 
Sbjct: 452 TITFESIAGKGAKQLTFNQI----------ELEQAGPYAAEDADITLRLHQALRPQLEKT 501

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     +  L  +   +  RG  +  +     +Q +     +L++E      G   
Sbjct: 502 GRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRKHSQELAERMAELEKEAHEEA-GESF 560

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+   + + GL +   T      T + VL            +  +R       
Sbjct: 561 NLGSPKQLQAIFYDKMGLPVVKKTPKGAPSTAEPVLQELAHEHTLPRLILEHRSL----- 615

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                     S+         P     R  R H    Q +T   
Sbjct: 616 --------------------------SKLKSTYTDTLPELIHHRTGRIHTSYHQAVTATG 649

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   +A EG KLV AD + IE R++A ++G++  L AF
Sbjct: 650 RLSSSEPNLQNIPIRSEQGRRIRQAFVAPEGYKLVAADYSQIELRIMAHLSGDKGLLTAF 709

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           E GED++  T A  F VA   V+ DQR   K +   L Y   A    +      L++   
Sbjct: 710 EKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINFGLIYGMSAFGLSRQ-----LDVGRH 764

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 +   E +     +   +++   +    + F G           + ++R  ++  
Sbjct: 765 QAQEYIDRYFERYPAVLKYMDNIRKQAHDDGYVETFYGRRL-----YLPEINARNKQMQQ 819

Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +        G A  II R    V     +  +++  ++L     L
Sbjct: 820 AAERTAINAPMQGTAADIIKRAMVSVEDWLQEHHQDDARMILQVHDEL 867


>gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902]
 gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902]
          Length = 998

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 116/660 (17%), Positives = 211/660 (31%), Gaps = 146/660 (22%)

Query: 41  PVELWDCVHDPVMP-QVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           P EL +      +P + +  AL     +        N+ ++R +L       + ++  + 
Sbjct: 440 PSELSEATPPQQLPLETVLMALSPWLASPQHPKALQNAKYDRLIL---LRHGLTLNGVVI 496

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             +LA        L+       L      E         +  T+  L  + +     A  
Sbjct: 497 DTLLADY------LRDAAAKHGLDLMSEREF------GFRPTTYGDLVGKKQTFADVAIE 544

Query: 156 LFGEYCKGDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
               YC  DV VTR +             + L  L   EQ L  +   +   G  +DV  
Sbjct: 545 PASLYCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPY 604

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---T 258
             TL+  +     +L+ + + +   +  +    ++L   LF   GL  +    T+T   T
Sbjct: 605 LKTLSDELGSTLNRLETDAKQVA-EVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFST 663

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    V  +R+                                S+   
Sbjct: 664 DATVLEKLENDHPVVPLVLEHRVL-------------------------------SKLKS 692

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373
                 P        R H + +Q +T      +S+P+   I      S  +R   +  EG
Sbjct: 693 TYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEG 752

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE R+L  ++GE+   +A+ TG+D++  T      +    V+ D+R +GK
Sbjct: 753 WTLLSADYSQIELRILTHLSGEEVLQEAYSTGDDVHALTARLL--LDKDDVSADERRLGK 810

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y  GA   Q+ A  TG++       +      + +     F     E     A
Sbjct: 811 TINFGVIYGMGA---QRFARETGVSSAEAKEFL--TKYKQRYPKVFAFL----ELQERLA 861

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           +   ++ T   R +                                              
Sbjct: 862 LSRGYVETILGRRRP------------------------------------------FHF 879

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
           D+N L  +L         ++  + +       Q  R            +Q  S DI+   
Sbjct: 880 DRNGLGRLLGKD----PLEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVA 929

Query: 614 MMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           M+              ++L VHDE+V E  PD  +   +++ + M +       +PL  E
Sbjct: 930 MVQLQAVLLSQGIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAVK--LSVPLVVE 987


>gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
 gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
          Length = 997

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/637 (17%), Positives = 204/637 (32%), Gaps = 145/637 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           LK  LE+  V  +A N  ++  ++     +D+       T++++     G P        
Sbjct: 470 LKPLLEDKSVLKIAQNLKYDLVIMSRY-GIDVAPFD--DTMLISYVLDAGTPHGHGMDAL 526

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A K       + K++I        +   +D      +        +   D  VT  ++  
Sbjct: 527 ADKWLGHTPLQLKDVIGSG----KNSVGFD------QVDIDKATAHAAEDADVTLRLWLV 576

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L+P  +           E+ L  +   +  RG  VD  +   L+  +     +L++E+  
Sbjct: 577 LKPRLAATGLVSVYERLERPLVSVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQ 636

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF   GL     T+T    T  ++L            ++ + 
Sbjct: 637 L-VGERINIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDW 695

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 ++         P    P   R H   
Sbjct: 696 RQL-------------------------------TKLKSTYTDALPGFIHPETKRVHTSY 724

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
               T      +SDP+   I         +R+  IA +G +LV AD + IE RVLA +A 
Sbjct: 725 ALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAE 784

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  G D++  T +  FNV    +  + R   K +   + Y   A     +A+ 
Sbjct: 785 IPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQ 841

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +     ++ +K                                            +  
Sbjct: 842 LSIPREEASNYIK--------------------------------------------KYF 857

Query: 515 SRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
            R   + + + +      E+G    I  +R   P +             PS R+   R  
Sbjct: 858 ERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSN---------PSIRAFNERAS 908

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            N R                 G   + I +A+ R    +  +   K    ++L VHDE++
Sbjct: 909 INARL---------------QGTAADIIRRAMVR---MDEALEKAKLSARMLLQVHDELI 950

Query: 634 CETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667
            ET D + E    ++ H+M +   P+ +  +PL  + 
Sbjct: 951 FETVDAEVEATIPIVRHVMENAAMPAVSMSVPLHVDA 987


>gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
          Length = 938

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 125/712 (17%), Positives = 218/712 (30%), Gaps = 185/712 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +                                             K 
Sbjct: 773 -GLAKSLGIDNISA--------------------------------------------KN 787

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G                        +    GR L
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQG-----------------------FVETLFGRRL 824

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----------- 617
              D+ N     NT  R                +Q  + D++   M++            
Sbjct: 825 YLPDIRNK----NTNARAGAERAA-----INAPMQGTASDLIKRAMIDVSRWLSECEASP 875

Query: 618 --TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                   +++ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 876 WDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 927


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/603 (15%), Positives = 191/603 (31%), Gaps = 90/603 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ET S   L             ++  +F             ++    Q +  A 
Sbjct: 349 RIVSLDTETTSLNALE----------AELVGLSFSVSPQEAFYVPIPNEQQKAQKIVNAF 398

Query: 62  ----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL 116
               EN ++  V  N  ++  VL+   N  I +   +   ++A     P         A 
Sbjct: 399 QPLYENEEIEKVGQNIKYDIEVLR---NYGITMKGPLFDTMIAHYLLQPELRHNMDDMAE 455

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                K     +LI    KG+    +                +Y   D  +T ++    E
Sbjct: 456 TYLRYKTIHIDQLIG--AKGKDQLNMRSLAP-------EQIVDYACEDADITLQLKNIFE 506

Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E  L Y+   +   G  +DV     +++  + + +  +Q++  L 
Sbjct: 507 PKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQALSEVSKTFNEQLSLYEQKIYELA 566

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            G   +    +++ T LF +  +      T+T    T +  L       P   ++     
Sbjct: 567 -GETFNISSPKQVGTILFEKLKVAEKPKKTKTGQYVTSEEELQKLINKHPIIDEILK--- 622

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                       + G  +         P    P+    H   +Q
Sbjct: 623 ----------------------------YRGLKKLLSTYVDALPKLVNPKTGNIHTSFNQ 654

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      +SDP+   I         +R C I +EG     AD + IE R++A ++G++
Sbjct: 655 ATTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPNEGCLFFSADYSQIELRIMAHLSGDE 714

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF  G D++  T A+ +     +VT+D+R   K     + Y         +A    
Sbjct: 715 NMIEAFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIYGITVF---GLAERLN 771

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  N    L++       +   + +    +E   ++   + F+       ++     +S+
Sbjct: 772 IERNEAKQLIE--GYFSTFPQVQAYMEQCKETAKQNGYVETFMHR-----RRYLADINSQ 824

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGN 575
            + +     +        G A    K   V +     ++     ++L     L +  + N
Sbjct: 825 NATVRGYAERNAINAPIQGSAADIIKLAMVRIYERFNNEGIKSKMILQVHDELNFSVLPN 884

Query: 576 NRS 578
            + 
Sbjct: 885 EKE 887


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/660 (15%), Positives = 195/660 (29%), Gaps = 156/660 (23%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFE 76
              ++  +   +          HD    P+ L            LE+     V  +  ++
Sbjct: 357 QAELVGVSVAIEAGKAAYIPVAHDYEDAPEQLDRDWVLEQLKPWLEDEGKAKVGQHLKYD 416

Query: 77  RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
             VL    N DI +       +L     N   +       + K       + +++  +  
Sbjct: 417 ANVLN---NYDITLRGIKFDTMLESYVFNSTGTRHDMDSLSSKFLGHSTVKFEDIAGKGA 473

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQ 183
           K +T   +                 Y   D  +T  + + + P   K           E 
Sbjct: 474 KQKTFNQI----------DLEQAAFYAAEDADITLRLHQAILPKLEKTPELVSVFSDIEL 523

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  +D    H  +  +     +++ +      G   +    ++L+  L
Sbjct: 524 PLVPVLAKMEQTGALIDPDRLHAQSAEIASRLQEVEIKAHEEA-GQEFNLSSPKQLQEIL 582

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + GL +   T               P   ++  N                        
Sbjct: 583 FEKQGLPVIKKTPKGQPSTAE------PILQELAENYELP-------------------- 616

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
            R  ++    ++         P   +    R H    Q +T      ++DP+   I    
Sbjct: 617 -RLIMEHRSLAKLKSTYTDKLPEM-IQHTGRIHTSYHQAVTATGRLSSTDPNLQNIPIRT 674

Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   +A EG KLV AD + IE R++A ++ ++  L AF   ED++  T A  F 
Sbjct: 675 QEGRRIRQAFVAPEGHKLVAADYSQIELRIMAHLSQDKGLLDAFAHDEDVHKATAAEVFE 734

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           VA   VT +QR   K +   L Y   A     +A   G++                  +A
Sbjct: 735 VAVDDVTAEQRRRAKAINFGLIYGMSAF---GLAKQLGISR----------------PEA 775

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           + + +   E +P   +      T                    N   + + +TI      
Sbjct: 776 QKYVQRYFERYP--GVRTYMETTRE------------------NAKEKGYVETIF----- 810

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                     GR L   ++       N   RQ            
Sbjct: 811 --------------------------GRRLYLPEIK----ARNAMMRQAAER-----TAI 835

Query: 599 ENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651
              +Q  + DI+   M+        T  G  +++ VHDE++ E  + D E   + +  +M
Sbjct: 836 NAPMQGSAADIIKRAMIKMHNWLADTDLGVKMIMQVHDELIFEVAEKDLEAAQAKIIDIM 895


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/599 (17%), Positives = 201/599 (33%), Gaps = 85/599 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENTDVTIVA 70
           D    G+        ++  AF ++           D    Q L E      EN ++  + 
Sbjct: 380 DTETTGLNP--LTAELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRPFFENDNIEKIG 437

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VL      ++ +   +   +LA     P         A    +       EL
Sbjct: 438 QNLKYDIKVLAKY---NVEVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNYTPISITEL 494

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I +  K      L  R  P          EY   D  +T ++ +  E            +
Sbjct: 495 IGKKGK----NQLSMREVP-----LDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFN 545

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +D    ++L++ ++ +   L++ +     G   +    ++L
Sbjct: 546 DIELPLLRVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYE-AAGEEFNIASPKQL 604

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T+T    T + VLS   K      QV                  
Sbjct: 605 GVILFEKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVL----------------- 647

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                          F G S+         P Q      R H +  Q +       +++P
Sbjct: 648 --------------DFRGLSKLKSTYVDALPLQVDESTGRVHTDYMQTVAATGRLSSNNP 693

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   +   E   L+ AD + IE R++A ++ E+  ++AF+ GED+
Sbjct: 694 NLQNIPIRTERGRQVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKNGEDI 753

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T ++ FNV   +VT++QR+  K +   + Y   A     +++ T L+ +    L++T
Sbjct: 754 HASTASKVFNVPITEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRSEAKELIET 810

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             A           R       + A ++ ++ T   R ++  +  +SR + +     +  
Sbjct: 811 YYATYPK------LRAYMSEQVDFARDNGYVQTVLGR-RRYLKDINSRNAVVRGAAERNA 863

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                 G A    K   +  +Y K         ++L     LV+         L    +
Sbjct: 864 VNAPIQGSAADIIKIAMI-NIYKKLQTGAYKTKMLLQVHDELVFDVYKPELEGLKNLIK 921



 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 23/151 (15%)

Query: 525 HQAFEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
               ++ IE   A   + R  +   V   +D   +  +L   R L      N+R   N  
Sbjct: 801 RSEAKELIETYYATYPKLRAYMSEQVDFARDNGYVQTVLGRRRYL---KDINSR---NAV 854

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET- 636
            R                +Q  + DI+   M+N  K          ++L VHDE+V +  
Sbjct: 855 VRGAAERNA-----VNAPIQGSAADIIKIAMINIYKKLQTGAYKTKMLLQVHDELVFDVY 909

Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            P+ +    +++   M +  ++   +PL  +
Sbjct: 910 KPELEGLK-NLIKTEMEN--AYELSVPLDVD 937


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 124/702 (17%), Positives = 212/702 (30%), Gaps = 180/702 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV---- 56
           ID ET S   +             +I  +F             HD       +P      
Sbjct: 361 IDTETDSLDPMR----------ARIIGISFAVQPLEAAYVPVGHDYPGAPDQLPLDEVLA 410

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAV 112
            L+  LE+     V  N  ++  V     N  + +  +    +L         P  L ++
Sbjct: 411 RLRPWLEDAGTRKVGQNIKYDSHV---FANHGVTVRGYAHDTMLESYVLEAHKPHGLASL 467

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +              L       E          P    A      Y   D  +T ++ 
Sbjct: 468 ADRH------------LGRSGINYEDLCGKGAGQIPFSHVAVDQASTYSGEDSEMTLQVH 515

Query: 173 KRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P    E  L  L +            I   G  +D  +    +  +      L+QE
Sbjct: 516 QTLWPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAGVLARQSHQLAQRMHTLEQE 575

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
             ++  G   +    +++   LF + GL ++  T     +T + VL       P   ++ 
Sbjct: 576 AHAIA-GQPFNMSSPKQIGEILFTKLGLPVKKKTASGAPSTDEEVLQELAADYPLPARIL 634

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R  A                               +         P    P   R H 
Sbjct: 635 EHRSLA-------------------------------KLKGTYTDKLPLMVNPSTGRVHT 663

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +       ++DP+   I         VR   +A+ G KLV AD + IE R++A +
Sbjct: 664 NYAQAVAITGRLSSNDPNLQNIPIRTAEGRRVREAFVAAPGHKLVSADYSQIELRLMAHI 723

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+   LKAF  G D++  T A  FN+A A VT +QR   K +   L Y  GA     +A
Sbjct: 724 SGDANLLKAFADGMDVHRATAAEVFNIAAADVTSEQRRYAKTINFGLIYGMGAF---GLA 780

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           ++ G+        ++       +    +  R+M E                         
Sbjct: 781 ASLGIEQKAARDYIE-----RYFARYPDVKRYMDET------------------------ 811

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YR 571
                        +A    + + + +  R+                 ++LP  +     R
Sbjct: 812 -------------KAGAAQLGHVETLFGRR-----------------IVLPEIKGGNGPR 841

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
                R  +N                     Q  + D++   M+   KA         ++
Sbjct: 842 KAAAERQAINAPM------------------QGTAADLIKLAMIAVQKAIDDEGRASKMI 883

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P+ +  +    L  LM         +PL AE
Sbjct: 884 MQVHDELVLEVPEAELGWAREALPRLMAGVAQ--LKVPLVAE 923


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/699 (16%), Positives = 208/699 (29%), Gaps = 173/699 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           + +D ET S   +          D  ++  +F  ++                 +    K 
Sbjct: 357 ISLDTETTSTNAI----------DAQLVGLSFAVEEKKAYYVPVPEQANEAQNIVDKFKA 406

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA- 115
             EN +   V  N  ++  VL+   N  I +   +   ++A     P     +  + E  
Sbjct: 407 IYENPNTLKVGQNIKYDLEVLR---NYGIMLQGPLFDTMIAHYLLQPELRHNMDFMAEVY 463

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L   +  ++    LI    KG+T + + +               Y   D  +T ++   L
Sbjct: 464 LNYETVHID---ALIG--AKGKTQKNMRELAP-------SEVYAYACEDADITLQLKNVL 511

Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P           +  E  L  +   +   G  +D A     +Q+      +L+QE+   
Sbjct: 512 QPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ- 570

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
             G   +    +++   LF E  +      T+T    T + VL + +   P    +    
Sbjct: 571 AAGKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHIL--- 627

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                        +    +         P    PR    H   +
Sbjct: 628 ----------------------------DYRALKKLLGTYVDALPKLINPRTGHIHTSFN 659

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +SDP+   I         +R C I  EG +   AD + IE RV+A ++ +
Sbjct: 660 QAVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G D++  T A+ ++   ++VT+D+R   K     + Y         +A   
Sbjct: 720 ANMLDAFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGIIYGITVF---GLADRL 776

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +       L+                                                 
Sbjct: 777 NIERAEAKQLIDGYF--------------------------------------------K 792

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
              ++ + + QA E    NG       RR                 LP   S        
Sbjct: 793 MFPQVRDYMEQAKETAKANGYVETFFHRRRY---------------LPDINSS------- 830

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
                N T R +              +Q  + DI+   M+              ++L VH
Sbjct: 831 -----NATVRGIAERNA-----INAPIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVH 880

Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           DE+     P   E    ++   M +  ++   +PL A+G
Sbjct: 881 DELNFSVLPTEKELVERIVMEEMQA--AYPLDVPLVADG 917


>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92]
 gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
          Length = 922

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/620 (17%), Positives = 195/620 (31%), Gaps = 92/620 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D     +  Y E   ++  +F  +          HD            + + +K  LE++
Sbjct: 349 DTETTSLN-YME-AELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETLLEKMKPLLESS 406

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           D   V  +  ++  VL       I +       +L     N   +       A +    K
Sbjct: 407 DHKKVGQHLKYDMNVLARY---GIELTGIEFDTMLESYVLNSTATRHDMDSLADRYLGLK 463

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
             + +++  +  K  T   +                 Y   D  +T  + + +    SK 
Sbjct: 464 TIKFEDIAGKGKKQLTFNQI----------ELEQAAPYAAEDADITLRLHQAINAQLSKD 513

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E+ L  +   I   G  VD ++    +  +     +L+++   +  G   
Sbjct: 514 ETLTSVFNDIERPLIPVLSHIERNGALVDASMLGEQSIELAERMVELERQAYDIA-GKEF 572

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF E  + +   T      T + VL       P    +  +R       
Sbjct: 573 NLASPKQLQQILFEELSIPVIKKTPKGAPSTAEEVLQELALDYPLPKLILEHRSL----- 627

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                     S+         P    P   R H    Q +T   
Sbjct: 628 --------------------------SKLKSTYTDKLPLMINPGTGRIHTSYHQAVTATG 661

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              ++DP+   I         +R   IA EG K+V AD + IE R++A ++ +Q  L AF
Sbjct: 662 RLSSTDPNLQNIPVRTQEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAF 721

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A  F V   QV+ DQR   K +   L Y   A     +A   G+     
Sbjct: 722 SKGADIHRATAAEVFKVELDQVSDDQRRSAKAINFGLIYGMSAF---GLAKQLGIARKDA 778

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  +      E + +     +   ++    A E  ++ T   R +    +  +R +    
Sbjct: 779 AQYI------EHYFETYPGVQHYMDDIRAKAQEQGYVETLFGR-RLYLPEIKARNAMRRQ 831

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVY--RDVGNNRSY 579
              +        G A    KR  V +     + +  + +++     LV+  RD   +   
Sbjct: 832 AAERTAINAPMQGTAADIIKRAMVTVDKWLAESDFDVRMIMQVHDELVFEVRDTQVDSFV 891

Query: 580 LNTTTRQLTREYTYGGKLTE 599
                +  T        L E
Sbjct: 892 EAVKDKMATAADLDVPLLVE 911


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 115/680 (16%), Positives = 209/680 (30%), Gaps = 172/680 (25%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVL-----KEALENTD 65
           +D     +   A    ++  +              H   +  + + L     K  LE++ 
Sbjct: 372 VDTETTSLDALA--AELVGISLSVKPGEACYIPVAHRNGEAQLSRELVLKRMKSWLESSS 429

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKLSSQK 122
              V  N  ++   +    N DI +       +L      + LP  + ++ E        
Sbjct: 430 HLKVGQNLKYD---IHIFANYDIHLEGIAFDTLLESYVLESHLPHNMDSLAERHL----- 481

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
              G + I     C    H+  +D      +   ++   Y   D  +T  +   L P   
Sbjct: 482 ---GLKTIRYEEVCGKGVHQIGFD------QVDLQIATNYAAEDADITLRLHLELWPQIQ 532

Query: 181 KEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
               L Y+ + I              G  +D AL     Q V     +L+ E+  L  G 
Sbjct: 533 ASPGLLYVYEKIEMPAMLVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEIHRLA-GQ 591

Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             + +  +++   LF +  L +         +T + VL    +  P   ++ + R  A  
Sbjct: 592 PFNIQSPKQIAEILFGQLELPIVKKTPSGAPSTDEEVLQKLAEDYPLPARILDYRSLA-- 649

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                        +         P    P+  R H    Q    
Sbjct: 650 -----------------------------KLMSTYIEKLPRMADPKTGRIHTNFSQATAV 680

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   I ++G KL+ AD + IE R++A +A ++  L 
Sbjct: 681 TGRLASSDPNLQNIPVRTEEGRRIREAFIPADGCKLLSADYSQIELRIMAHIAEDENLLT 740

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ G+D++  T A  F +    V  +QR   KV+   L Y   A     +A   G+   
Sbjct: 741 AFKEGKDVHQATAAEIFGIPLDDVNSEQRRYAKVINFGLIYGMSAF---GLAGNLGIERA 797

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
              + +      + ++      ++M+    E A E+ ++ T   R              L
Sbjct: 798 AAQNYI-----AKYFDRYPGVAQYMERTRLE-ARENGYVETVFGR-------------RL 838

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSY 579
           W                                        LP  +     R  G  R+ 
Sbjct: 839 W----------------------------------------LPEIKGSNGPRRQGAERAA 858

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
           +N                     Q  + D++   M+         +    ++L VHDE+V
Sbjct: 859 INAPM------------------QGTAADLIKLAMIAVEDWLEKEQLKTKMLLQVHDELV 900

Query: 634 CETP-DTDEFNASMLYHLMT 652
            + P D  +   + L  LM 
Sbjct: 901 FDVPLDEIDLLQAKLPDLMC 920


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 117/652 (17%), Positives = 214/652 (32%), Gaps = 156/652 (23%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107
            ++ + L+  L + D   V  N+ F+  V    ++  I +   +   ++A     P    
Sbjct: 414 EIVLEKLRPILASDDYPKVFQNAKFDIDV---FYHQGITVKGLVFDTMVASYVLHPELTH 470

Query: 108 ALKAVG-------EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
            L+ +         +L   S  +  GK  IA      T                     Y
Sbjct: 471 NLEDLCDRYLTGITSLSYKSLGIPAGK-TIADLDIPTTAN-------------------Y 510

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQ 209
           C  D   T  + ++L+   +K   L+ L   I            + G  +++      +Q
Sbjct: 511 CGLDAYATYLLREKLQAELTKIPPLYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQ 570

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLS 264
            ++ +   +++     + G   +    ++L   LF    L+ +   +T     T Q VL 
Sbjct: 571 QLERDLAYIEKNAYE-SIGETFNLSSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLE 629

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             +   P    +  +R                                 S+         
Sbjct: 630 KLQGDHPLVDYILEHR-------------------------------TLSKLKSTYVDAL 658

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379
           P    P+ +R H + +Q IT      +S+P+   I      S  +R   I   G  LV A
Sbjct: 659 PKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPIRSEFSRRIRQAFIPENGYLLVSA 718

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++ E   L+A+ + +D++  T    F+    ++T ++R++GK +   +
Sbjct: 719 DYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFDKR--EITPEERSLGKTINFGV 776

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  GA   QK A  + L +      ++     + +     +     EN  + AI   ++
Sbjct: 777 IYGMGA---QKFARESKLTVEQGRKFIEKYH--QRYAQVFEYL----ENSKKQAITQGYV 827

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T   R +                                          Y   D   L 
Sbjct: 828 ETILGRRR------------------------------------------YFNFDNPLLK 845

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            +    R L   D+  +   LN    QL R            +Q  S DI+   M+   +
Sbjct: 846 RL----RGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAE 895

Query: 620 AG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666
                   ++L VHDE+V E P  +  +    +   M    S    +PL  E
Sbjct: 896 VLQNYRARLLLQVHDELVLEVPREEWPSLESKIKTTMEEAVS--LTIPLLVE 945


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/682 (18%), Positives = 212/682 (31%), Gaps = 172/682 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----HDPVMPQV 56
             + +D ET    DL           +   L   G    P + W        +   +   
Sbjct: 322 KEICLDTET---TDLRP---------LEAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQ 369

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           LK  LEN  +    HN  ++  VL+   N +I +       +LA                
Sbjct: 370 LKPLLENPSIGFYGHNFKYDYHVLR---NHNISVANISFDTILASYLLNSHKRQHSLDHL 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+L  +     +ELI +         L  +N      A      YC  DV  T  +   
Sbjct: 427 ALELFDKVKIAIQELIGKG-----KNQLNMKN-----VALDKICHYCCEDVDYTIRLKNI 476

Query: 175 LEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L      E++L             +   +   G  +D A    L+Q +  E   L+Q + 
Sbjct: 477 LLSQLE-ERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNIY 535

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280
           +L  G + +    ++L   LF + G+       T   T   VL   K + P A ++   R
Sbjct: 536 ALA-GEIFNLNSPKQLSQILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEYR 594

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                             +         P Q   +  R H   +
Sbjct: 595 TLE-------------------------------KLRSTYVNSLPLQVNAKTGRIHCNFN 623

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
           Q +         DP+   I         +R       E    + AD + IE R+LA ++ 
Sbjct: 624 QSMAATGRLSCQDPNLQNIPVRTEVGRQIREAFRPEKEDWSYLSADYSQIELRLLAHLSE 683

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +KAF + ED++  T +  F+V   QV+ +QR   K +   L Y   A     +A  
Sbjct: 684 DPVLIKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFGLIYGQQAF---GLAHE 740

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++  T A  +                                         + + +++
Sbjct: 741 LGIDTKTAAAFI-----------------------------------------QRYFERY 759

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDV 573
            +V E      Q+  +T   GKA+    R                 +LP  RS       
Sbjct: 760 GKVKEFLEACKQSARET---GKAVTMYGRE---------------RLLPEIRSQNAMIRA 801

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
             +R  +NT                   +Q    D++   M+         K    ++L 
Sbjct: 802 TADRFAVNTP------------------IQGTQADLIKMAMLKINKLLIQEKKKGFMILQ 843

Query: 628 VHDEIVCETPDTDEFNASMLYH 649
           +HDE++ E P+ +  + S L  
Sbjct: 844 IHDELIFEVPNQELESISHLVK 865


>gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 921

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/684 (16%), Positives = 201/684 (29%), Gaps = 162/684 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDSVLKTLKPLLEDPGKIKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           ++  +  K  T + +          A    G Y   +  +T  + +  E           
Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT+D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELEGVTQDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T                              
Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVET------------------------------ 810

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  I  +R  +P +  K          PS R       G  R  +N          
Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRK------GAERMAINAPM------- 841

Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                      Q  + DI+ + M      ++A+     ++L VHDE+V E  +       
Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDL---VD 887

Query: 646 MLYHL----MTSNPSWAKGLPLKA 665
            +       M+     A  L ++ 
Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911


>gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
 gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13]
 gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40]
 gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
          Length = 921

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 110/654 (16%), Positives = 195/654 (29%), Gaps = 155/654 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           ++  +  K  T + +          A    G Y   +  +T  + +  E           
Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T                              
Sbjct: 787 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 810

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  I  +R  +P +  K          PS R+      G  R  +N          
Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 841

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA----TKAG--YDIVLTVHDEIVCETPDT 639
                      Q  + DI+ + M+       ++G    ++L VHDE+V E  + 
Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVRED 884


>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
 gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
          Length = 938

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 126/712 (17%), Positives = 217/712 (30%), Gaps = 185/712 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +                                             K 
Sbjct: 773 -GLAKSLGIDNISA--------------------------------------------KN 787

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G                        +    GR L
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQG-----------------------FVETLFGRRL 824

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----------- 617
              D+ N     NT  R                +Q  + D++   M++            
Sbjct: 825 YLPDIRNK----NTNARAGAERAA-----INAPMQGTASDLIKRAMIDVSRWLSECEASP 875

Query: 618 --TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                   +++ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 876 WDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 927


>gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 921

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/684 (16%), Positives = 200/684 (29%), Gaps = 162/684 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           ++  +  K  T + +          A    G Y   +  +T  + +  E           
Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T                              
Sbjct: 787 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 810

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  I  +R  +P +  K          PS R+      G  R  +N          
Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 841

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                      Q  + DI+ + M+        +     ++L VHDE+V E  +       
Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VD 887

Query: 646 MLYHL----MTSNPSWAKGLPLKA 665
            +       M+     A  L ++ 
Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911


>gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 925

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/684 (16%), Positives = 200/684 (29%), Gaps = 162/684 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 351 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 410

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 411 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 470

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           ++  +  K  T + +          A    G Y   +  +T  + +  E           
Sbjct: 471 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 520

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 521 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 579

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 580 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 624

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 625 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 673

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 674 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 733

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 734 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 790

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T                              
Sbjct: 791 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 814

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  I  +R  +P +  K          PS R+      G  R  +N          
Sbjct: 815 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 845

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                      Q  + DI+ + M+        +     ++L VHDE+V E  +       
Sbjct: 846 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VD 891

Query: 646 MLYHL----MTSNPSWAKGLPLKA 665
            +       M+     A  L ++ 
Sbjct: 892 QISEQIRPHMSGAAELAVPLLVEV 915


>gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 921

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/684 (16%), Positives = 200/684 (29%), Gaps = 162/684 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           ++  +  K  T + +          A    G Y   +  +T  + +  E           
Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T                              
Sbjct: 787 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 810

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  I  +R  +P +  K          PS R+      G  R  +N          
Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 841

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                      Q  + DI+ + M+        +     ++L VHDE+V E  +       
Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VD 887

Query: 646 MLYHL----MTSNPSWAKGLPLKA 665
            +       M+     A  L ++ 
Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911


>gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 921

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/684 (16%), Positives = 200/684 (29%), Gaps = 162/684 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           ++  +  K  T + +          A    G Y   +  +T  + +  E           
Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T                              
Sbjct: 787 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 810

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  I  +R  +P +  K          PS R+      G  R  +N          
Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 841

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                      Q  + DI+ + M+        +     ++L VHDE+V E  +       
Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VD 887

Query: 646 MLYHL----MTSNPSWAKGLPLKA 665
            +       M+     A  L ++ 
Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911


>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
 gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
          Length = 930

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 215/690 (31%), Gaps = 162/690 (23%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID     +   A +  ++  +  F           H     P+ L         K  LEN
Sbjct: 355 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGRLKPHLEN 412

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119
             +  +  N  +++ V     N DI ++      +LA     + L   L  + E  L L 
Sbjct: 413 PALKKIGQNLKYDQHV---FANYDIALNGIAGDSMLASYIIESHLGHGLDELSERWLGLE 469

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171
           +   E         C     +            A     EY   D      +        
Sbjct: 470 TITYES-------LCGKGAKQIS------FADVAIGQATEYTAQDADFALRLEAHLRAQM 516

Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             K+LE     E  +  +   +   G  +D A     +  +  E  KL+QE  +   G  
Sbjct: 517 DAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 575

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L+  LF + G+  + L +T                          ++  +  
Sbjct: 576 FNLNSPKQLQEILFDKMGIPTKGLKKT--------------------------AKGGIST 609

Query: 291 LNTLVEAMNSDGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
              ++E +  D  L +  LQ    ++         P    P+  R H    Q +      
Sbjct: 610 NEAVLEQLAPDYALPKIILQNRSLAKLKSTYTDKLPEMIFPKDGRVHTTYAQAVAITGRL 669

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +++P+   I         VR    A +G  +V AD + IE R++A ++G++  + AF+ 
Sbjct: 670 ASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F +AP  V+ +QR   K +   L Y  G      +A + G++  +   
Sbjct: 730 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY---GLAKSLGIDNLSA-- 784

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                     K    +  +R   +   +
Sbjct: 785 ------------------------------------------KTFIDRYFARYPGVAEYM 802

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTT 583
            +  EQ    G       RR               L LP  R+       G  R+ +N  
Sbjct: 803 QRTKEQAAAQGYVETLFGRR---------------LYLPDIRNKNTNARAGAERAAINAP 847

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETP 637
                              Q  + D++   M      ++       +++ VHDE+V E P
Sbjct: 848 M------------------QGTASDLIKRAMIDVSRWLDLDGLKTKLIMQVHDELVLEVP 889

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             + +     L  +M         +PL AE
Sbjct: 890 KAELDLVKEKLPQIMAKVDEGMLNVPLVAE 919


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/588 (15%), Positives = 178/588 (30%), Gaps = 89/588 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D     +  Y     ++  +F             HD            +  VLK  LEN 
Sbjct: 342 DTETTSLD-YL-QAQIVGVSFAVQVGEAAYVPLAHDYLGAPQQLSCDNVLAVLKPLLENP 399

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKLSSQKM 123
               +  N  ++  VL    N  I +       +L +      +       A     +  
Sbjct: 400 KKRKIGQNLKYDAHVLA---NHGIHLQGMAFDTMLESYVLNSTTKHDMDSLAQIYLQKTT 456

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181
              +++  +  K  +   +                 Y   D  +T ++ + L        
Sbjct: 457 ITFEDVAGKGKKQLSFNQI----------PLEHATPYACEDADITLQLHQNLWEQLQNRP 506

Query: 182 ---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   +   G  +D  L H  +  +     +L+Q       G   +
Sbjct: 507 KLERIFDDLEMPLIPVLIRMERHGVKIDATLLHQQSAELATRLQQLEQAAYEEA-GTEFN 565

Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               ++L+T LF +  L +         +T   VL       P    +   R        
Sbjct: 566 LNSPKQLQTILFDKLSLPVLKKTPKKDPSTAVEVLEELAIDYPLPQLILIYRSL------ 619

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                    S+         P Q  P+  R H    Q +T    
Sbjct: 620 -------------------------SKLKSTYTDTLPQQINPKTGRVHTSYHQAVTTTGR 654

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +++P+   I         +R   IA +G  L+ AD + IE R++A ++ ++  L A  
Sbjct: 655 LSSTNPNLQNIPIRSAEGRRIRQAFIAPKGYCLLAADYSQIELRIMAHLSEDEKLLSALT 714

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++    A  F++A  +VT +QR   K +   L Y   A     +A   G+  +   
Sbjct: 715 AGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVNFGLMYGMQAF---GLAKQLGIERHQAQ 771

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +    A   +   + +   M+    +    +   G           +  +R       
Sbjct: 772 IYMDAYFAR--YPGVKAYMDDMRVLAKQQGYVETVFGRRL-----YIPEIKTRHIGRRQA 824

Query: 524 LHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
             +        G A    KR  + +  +++K   ++ +++     LV+
Sbjct: 825 AERTAINAPMQGTAADLIKRAMLTVDDWIEKSGLDVKMLMQVHDELVF 872


>gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 928

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 118/681 (17%), Positives = 213/681 (31%), Gaps = 166/681 (24%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFE 76
              ++  +F  ++         HD    P+ L         K  LE+ +   V  +  ++
Sbjct: 364 QAELVGMSFCIEEGEAAYLPLAHDYADAPEQLDRDSVLALFKPLLEDKNKAKVGQHLKYD 423

Query: 77  RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
           + VL    N DI +       +L     + + +       A           +++  +  
Sbjct: 424 KNVLA---NYDINLQGIAYDTMLESYVLDSVATRHDMDSLAQHYLGLSTVHFEDIAGKGA 480

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRL--EP-----LSSKEQ 183
           K  T   +                 Y   D  +T      I+K+L   P     LS  E 
Sbjct: 481 KQLTFNQI----------PLEQAAHYAAEDADITLRLHNHIWKKLNQSPELASVLSEIEV 530

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  +D       +Q +     +L+ E+  L  G   +    ++L+  L
Sbjct: 531 PLATVLAKMEQFGVLIDSQKLGQQSQDLASRILQLENEVHILA-GEEFNLGSTKQLQEIL 589

Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           F +  L +   T      T + VL       P    +   R+                  
Sbjct: 590 FKKLDLPVLKKTPKGAPSTSEEVLQELALTYPLPKLLMEFRVL----------------- 632

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                         S+         P     R  R H    Q IT      +++P+   I
Sbjct: 633 --------------SKLKNTYTDKLPKMINQRSGRVHTSYHQAITATGRLSSTEPNLQNI 678

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    VR   I   G K+V AD + IE R++A ++ ++  LKAF  G+D++  T A
Sbjct: 679 PIRTEQGRRVRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLLKAFSQGKDIHTATAA 738

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             FNV+  +VT +QR   K +   L Y   A    K  + +                   
Sbjct: 739 EVFNVSLEEVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSR------------------ 780

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
            +DA+++     E +P                             +   +  A       
Sbjct: 781 -QDAQHYMDLYFERYP----------------------------GVLKYMEDA------- 804

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
              ++A+++  V  V+              GR L   D+          +  L R+    
Sbjct: 805 --RVVAKEKGYVSTVF--------------GRRLYLPDI--------NASNGLRRKGAER 840

Query: 595 GKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPD-TDEFNASM 646
                  +Q  + DI+ + M+               +++ VHDE++ E  +   E + + 
Sbjct: 841 A-AINAPMQGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDELIFEIKEQNVESDKNT 899

Query: 647 LYHLMTSNPSWAKGLPLKAEG 667
           +  LM    S    +PL  E 
Sbjct: 900 IVDLMEKAVS--LDVPLIVEA 918


>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
 gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
          Length = 908

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/523 (17%), Positives = 168/523 (32%), Gaps = 77/523 (14%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            LK+ LE+     V  +  ++  VL    N  I +  +    +L     + +        
Sbjct: 384 QLKDLLEDPQYQKVGQHLKYDMHVLA---NYGIALRGFAGDTMLESYVLDSVGGRHDMDS 440

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A +   ++    +++  +  K  T   +          +      Y   D  +T ++++
Sbjct: 441 LAERYLGRRTISFEDVAGKGAKQLTFNQV----------SLEQAVPYACEDADITWQLYE 490

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L              +  E  L  + Q+I   G  V   +    + ++     +L+ E 
Sbjct: 491 YLTNQLTATESLHTVYTDIELPLAPVLQSIERNGALVSREILQQQSSVIGARLIELEAEA 550

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L   LF E  L +   T      T + VL       P    +  
Sbjct: 551 HDLA-GRPFNLGSTKQLGEILFDELKLPIIKKTPKGAPSTGEEVLVELALDYPLPKVLLE 609

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          + G ++         P    PR  R H  
Sbjct: 610 -------------------------------YRGLAKLKSTYTDKLPTLINPRTGRIHTS 638

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      +SDP+   I         +R   IA E   +V AD + IE R++A ++
Sbjct: 639 YHQAVTATGRLSSSDPNLQNIPIRSVEGRAIRKAFIAPENHVIVAADYSQIELRIMAHLS 698

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   L AF  G D++  T A  F VA  +VT DQR   K +   L Y   A     +A 
Sbjct: 699 GDAGLLTAFNEGLDVHAATAAEVFGVALDEVTSDQRRSAKAINFGLIYGMSAF---GLAK 755

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        + T      ++       +M     + A E  ++ T   R +    + 
Sbjct: 756 QLHIGRAESQAYIDT-----YFQRYPGVLDYMDRT-RQGAHERGYVETIFGR-RLYLPEI 808

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
           ++R         +        G A    K+  + +    +D +
Sbjct: 809 NARNKMRVQAAERTAINAPMQGSAADIIKKAMLAVDRFLRDSS 851


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 113/691 (16%), Positives = 212/691 (30%), Gaps = 167/691 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63
           ID     + +      ++  +F  +          H+       +P       LK  LEN
Sbjct: 365 IDTETTSLDEMV--AQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLAKLKPWLEN 422

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQK 122
            +   +  +  ++R V     N  I +  +   T++ +    +         A +   + 
Sbjct: 423 PEKKKLGQHIKYDRHV---FANHGIEVEGYAHDTMLQSYVLEVHKPHGLASLAERHLGRS 479

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               ++L  +     +   +                EY   D   T ++ + L P     
Sbjct: 480 GISYEDLCGKGAHQISFSQV----------DIAKAAEYSCEDSDQTLDVHRTLWPQLEAN 529

Query: 183 QELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++L ++ Q           +   G  +D A     +  +      L+QE   +  G   +
Sbjct: 530 EKLRFVYQLEMDSSEALYRVERNGVMIDSATLAAQSHELGTRIMALEQEAYEIA-GQPFN 588

Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               +++    F + GL +         +T + VL    +  P   ++  +R        
Sbjct: 589 LGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHR-------- 640

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF-PPQNLPRPSRSHEELDQIITHLP 347
                                  G S+             N PR  R H    Q +    
Sbjct: 641 -----------------------GLSKLKGTYTDKLGQLAN-PRTGRVHTHYAQAVAVTG 676

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              ++DP+   I         VR   +A  G  +  AD + IE R++A ++G++  L+AF
Sbjct: 677 RLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESLLRAF 736

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A  F   P QV+ +QR   KV+   L Y   +     +A   G+     
Sbjct: 737 TEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAA 793

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  ++   A           +   +     A E  ++ T   R     R     ++    
Sbjct: 794 ASYIERYFARYP------GVKAYMDETKALAKEQGYVETVFGR-----RLYLPEINS--- 839

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                                                   P+G     R  G  R+ +N 
Sbjct: 840 ----------------------------------------PNG----PRRGGAERAAINA 855

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
                               Q  + D++   M+         K    +++ VHDE+V E 
Sbjct: 856 PM------------------QGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEV 897

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           P+ + E+  + +  LM      A  +PL AE
Sbjct: 898 PEAEVEWVRAEIPRLMAGVA--ALKVPLLAE 926


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/699 (17%), Positives = 217/699 (31%), Gaps = 174/699 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----HDPVMP-----Q 55
           ID ET + +D+          +  ++  +   +                   +P      
Sbjct: 341 IDTET-TSLDVM---------NAKLVGISLSIEPGHAAYIPLAHHSMEQSEQLPLQSVLD 390

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            LK  LEN     V  N  ++  VL    N  I +      TL+ +              
Sbjct: 391 KLKPWLENPKKHKVGQNLKYDSHVLA---NYGIRLQGIVHDTLLESYVLESHRRHDMDSL 447

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K     ++    C     +  +D        A  +   Y   D  VT ++ + 
Sbjct: 448 SERFLDYKPVSYTDI----CGKGASQIGFD------EIAIDVATHYAAEDADVTLQLHQS 497

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +           E     + Q +   G  +DV   +  ++ + V+   L +   
Sbjct: 498 MWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRELGVKMDSLQENAY 557

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            +T G   +    ++L   LF +  L +   T +    T + VL    +  P    +   
Sbjct: 558 -VTAGQPFNLNSPKQLGELLFDKLKLPMIKKTPSGAPSTSEEVLEKLAEDFPLPKIIL-- 614

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G S+         P    P   R H   
Sbjct: 615 -----------------------------DYRGMSKLKTTYTDKLPRMVNPETGRVHTNY 645

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IAS G K++ AD + IE R++A ++ 
Sbjct: 646 AQAVAVTGRLASNDPNLQNIPIRSEEGRRIREAFIASPGNKIISADYSQIELRIMAHLSD 705

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   LKAF  G+D++  T +  F++ P +VT DQR   KV+   L Y   A      AS 
Sbjct: 706 DASLLKAFHDGQDVHRATASEIFDITPLEVTSDQRRYAKVINFGLIYGMSAFGV---ASN 762

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                  DA+N+     E +P        +    +  ++  R   
Sbjct: 763 LGISRT----------------DAKNYIDRYFERYP-------GVARYMDETRQLAR--- 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      Q + +T+                                GR L   ++ 
Sbjct: 797 ----------EQGYVETVF-------------------------------GRRLWLPEIN 815

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628
           +     N   RQ               +Q  + DI+   M+         K    +++ V
Sbjct: 816 SP----NGPRRQAAERAA-----INAPMQGTAADIIKLSMIAVQDWLEKEKLDSKLIMQV 866

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V + P+ +       L  LM         +PL AE
Sbjct: 867 HDELVLDVPEKELVLVREKLPELMAQVA--RLKVPLIAE 903


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/634 (16%), Positives = 194/634 (30%), Gaps = 144/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LEN ++  +  N  ++ TV     N  I +       +L + +            
Sbjct: 427 QLKPILENPEIKKIGQNIKYDLTV---FANHGINVQGVAFDTMLESYTLNSTGRHNMDDL 483

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K  E + +  +     T + +       +                VT ++ + 
Sbjct: 484 SDRYLGHKTIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDAD----------VTMKLHQV 533

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L                 E  L  +   I   G  +D A     +  ++    +L+QE+ 
Sbjct: 534 LWSQLVQEPTLVKLFDEIELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVH 593

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S   G V +    ++L+  LF + GL +   T                   +V       
Sbjct: 594 SEA-GSVFNLASTKQLQEILFEKLGLPILKKTPKGAASTNE----------EVLEELAMM 642

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                  L                ++  G S+         P     +  R H    Q +
Sbjct: 643 GHRVPKLL----------------IEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYHQAV 686

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +SDP+   I         +R   IA +G K+V AD + IE R++A +A ++  
Sbjct: 687 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHLANDEGM 746

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           LKAF  G+D++ +T +  F V   +VT +QR   K +   L Y         +++  G++
Sbjct: 747 LKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEF---GLSNQLGIS 803

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                             DA+ +                               ++  V 
Sbjct: 804 R----------------ADAKQYMEAYF-------------------------NRYPNVL 822

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++    +   +     +  +R  +P +                     R     R 
Sbjct: 823 QFMTDIK--AKAAEKGYVETLLGRRLYLPEIKSSN---------------AMRRKAAERV 865

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633
            +N                     Q  + DI+   M+   +         +++ VHDE+V
Sbjct: 866 AINAPM------------------QGTAADIIKIAMIGIDRIIQHSDEIKMIMQVHDELV 907

Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E   D  E  ++++   M         +PL AE
Sbjct: 908 FEVREDKVEHYSALIKAEMEKAIQ--LSVPLIAE 939


>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
 gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
          Length = 993

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 110/651 (16%), Positives = 191/651 (29%), Gaps = 142/651 (21%)

Query: 46  DCVHDPVMPQ----------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D +     P            LK  LE   V  +A N  ++  VL  C     PI   + 
Sbjct: 446 DLLGGGEPPPAQIPFDDAIARLKPLLEARSVLKIAQNMKYDLLVLACCGVDVAPIEDTML 505

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAW 154
                 S      L  + +               +   C          R+     R   
Sbjct: 506 ISYALDSGRNNHGLDELAKKH-------------LGHECIPFAAVAGSGRSFIGFARVPL 552

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALA 204
               EY   D  V   +++ L+P  + E            +  +   +  RG  +D  + 
Sbjct: 553 DKATEYAAEDADVALRLWRVLKPRLAAEHMTSVYETLERPMVGVLAAMERRGVAIDRNIL 612

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
             L+     +  +L+ E+  L  G   +    ++L   LF   GL     T T      +
Sbjct: 613 SRLSGEFAQDMARLEAEIYDLA-GESFNLGSPKQLGDILFGRMGLPGAKKTATGAWSTSA 671

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
           S  +   ++   F  R                           L +   S+         
Sbjct: 672 SVLEDLAESGNTFAAR--------------------------ILDWRQLSKLKSTYTDAL 705

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379
           P       +R H       T      +S+P+   I         +R   +A  G  L+ A
Sbjct: 706 PGFVNKATNRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVAEPGHALISA 765

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA +A      +AF  G D++  T +  F V    +  D R   K +   +
Sbjct: 766 DYSQIELRLLAHIADIPQLRQAFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINFGI 825

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y   A     +A+  G+     A  +K       +E       +M              
Sbjct: 826 IYGISAF---GLANQLGIPREEAAAYIK-----RYFERFPGIRDYM-------------- 863

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               ++ K+  R              Q    TI                           
Sbjct: 864 ----DKTKRLVR-------------EQGVVTTIF-------------------------- 880

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                GR   +  +G++ +       +        G   + I +A++R    +  +    
Sbjct: 881 -----GRKCHFPRIGSSNASERAFFERAAINAPIQGAAADIIRRAMAR---MDAALATAG 932

Query: 620 AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGL--PLKAEG 667
               +++ VHDE+V E P +  E   +++  +M   P  A  L  PL+ E 
Sbjct: 933 CSARMLMQVHDELVFEAPLEETETTIAVVKRVMEEAPHPAATLTVPLQVEA 983


>gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
          Length = 937

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 126/712 (17%), Positives = 217/712 (30%), Gaps = 185/712 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 352 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQLDLQD 401

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  LEN  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 458

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 459 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 505

Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +          K+LE     E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 506 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 565

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 566 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 624

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 625 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 653

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 654 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 713

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G    
Sbjct: 714 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 771

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +                                             K 
Sbjct: 772 -GLAKSLGIDNISA--------------------------------------------KN 786

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G                        +    GR L
Sbjct: 787 FIDRYFARYPGVAEYMQRTKEQAAAQG-----------------------FVETLFGRRL 823

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----------- 617
              D+ N     NT  R                +Q  + D++   M++            
Sbjct: 824 YLPDIRNK----NTNARAGAERAA-----INAPMQGTASDLIKRAMIDVSRWLSECEASP 874

Query: 618 --TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                   +++ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 WDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 926


>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
 gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
          Length = 935

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 120/697 (17%), Positives = 210/697 (30%), Gaps = 171/697 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQV---------LKEALEN 63
           ID     +   A +  ++  +  F           H     P+          LK  LEN
Sbjct: 355 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQIDLQDVLGRLKPHLEN 412

Query: 64  TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-L 116
           + +  +  N  +++ V        N  I ++      +LA     + L   L  + E  L
Sbjct: 413 SALKKIGQNLKYDQHVFANYGIALN-GIALNGIAGDAMLASYIIESHLGHGLDELSERWL 471

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----- 171
            L +   E         C     +            A     EY   D      +     
Sbjct: 472 GLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFALRLEAHLR 518

Query: 172 ----FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                K+LE     E  +  +   +   G  +D A     +  +  E  KL+QE  +   
Sbjct: 519 AQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AA 577

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRM 281
           G   +    ++L+  LF + G+  + L +T      T + VL       P    +  NR 
Sbjct: 578 GQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 637

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            A                               +         P    P+  R H    Q
Sbjct: 638 LA-------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQ 666

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       +++P+   I         VR    A +G  +V AD + IE R++A ++G++
Sbjct: 667 AVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDK 726

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G      +A + G
Sbjct: 727 TLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY---GLAKSLG 783

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++  +                                             K    +  +R
Sbjct: 784 IDNISA--------------------------------------------KNFIDRYFAR 799

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              +   + +  EQ    G                        +    GR L   D+ N 
Sbjct: 800 YPGVAEYMQRTKEQAAAQG-----------------------FVETLFGRRLYLPDIHNK 836

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
               N   R                +Q  + D++   M++             +++ VHD
Sbjct: 837 ----NANARAGAERAA-----INAPMQGTASDLIKRAMIDVSCWLDSDGLKTKLIMQVHD 887

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E P+ + +     L  +M         +PL AE
Sbjct: 888 ELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 924


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 116/712 (16%), Positives = 213/712 (29%), Gaps = 173/712 (24%)

Query: 6    IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL---------------WDCVHD 50
            +D ET S                 ++     + + P +L                D +  
Sbjct: 420  LDTETTSLNPFR----------AELVGVGVAWGEGPADLAYIPIGHRVGSSGETPDLLSP 469

Query: 51   P--VMP-QVLKEALE----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
            P   +P   +  AL     +        N+ ++R +L       +P+   +   +LA   
Sbjct: 470  PPAQLPLDQVLTALAPWLGSAQHPKALQNAKYDRLIL---LRHGLPLEGVVMDTLLADY- 525

Query: 104  GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                 L+       L          L        ++  L  +              YC  
Sbjct: 526  -----LRDANAKHGLELLAQRNFGFL------PTSYSELVPKGADFSAVPIEQAALYCGM 574

Query: 164  DVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
            DV VTR +   L     +            E  L  +   +   G  +D A    L+  +
Sbjct: 575  DVHVTRRLAPLLRAQLEELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYLAELSSEL 634

Query: 212  DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSN 266
                 +L+ + ++   G   +    ++L   LF   GL  +   +T     T   VL   
Sbjct: 635  GQTLQRLEADAKA-AAGTDFNLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDAAVLEKL 693

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            +   P    V  +R                                 S+         P 
Sbjct: 694  EDAHPVVSLVLEHR-------------------------------TLSKLKSTYVDALPA 722

Query: 327  QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
               P   R H + +Q +T      +S+P+   I      S  +R   +   G +L+ AD 
Sbjct: 723  LMEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPEAGWQLISADY 782

Query: 382  AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            + IE R+LA ++GE+  ++A++ G+D++  T      +   +V+ D+R +GK +   + Y
Sbjct: 783  SQIELRILAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIY 840

Query: 442  QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              GA   Q+ A  TG++       +  +   + +     F     E     A+   ++ T
Sbjct: 841  GMGA---QRFARETGVSQTQAKEFL--SKYKQRYPKVFAFL----ELQERLALSRGYVET 891

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
               R +                                              D + L   
Sbjct: 892  ILGRRRP------------------------------------------FAFDPSGLGRH 909

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
            L         ++  + +       Q  R            +Q  S DI+   M+      
Sbjct: 910  LGKD----PLEIDLDIARRGGMEAQQLRAAANAP------IQGSSADIIKLAMVQLHHQL 959

Query: 622  ------YDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                    ++L VHDE+V E  P+  E   ++    M         +PL  E
Sbjct: 960  AASGLPARLLLQVHDELVLEAAPEALEAVRTLTRETMERAVE--LSVPLLVE 1009


>gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
           polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/546 (19%), Positives = 178/546 (32%), Gaps = 140/546 (25%)

Query: 149 NHREAWRL-----FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTIND 194
            H E         F E       ++  +F+ L P             E+ L  +   +  
Sbjct: 387 THPEGVARRYGGEFTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
           RG  +DV L   L+  ++ E  +L+ E+  L  G   +    ++L+  LF E GL     
Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGLTPVGR 505

Query: 255 TETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
           TE T +R      L + +   P    +                                Q
Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELIL-------------------------------Q 534

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCV 364
           +   S+         P    PR  R H   +Q  T      +SDP+   I     +   +
Sbjct: 535 YRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRI 594

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A EG  L+ AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V
Sbjct: 595 RKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALV 654

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   K +   + Y   A    +++   G++                +++AE F   
Sbjct: 655 DPKMRRAAKTVNFGVLYGMSA---HRLSQELGID----------------YKEAEAFIER 695

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
             ++ P+                +AW ++          +              +  +RR
Sbjct: 696 YFQSFPK---------------VRAWIERTLEEGRTRGYVE------------TLFGRRR 728

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            VP +  +                        R   N                    VQ 
Sbjct: 729 YVPDLASRVRS---------------VREAAERMAFNMP------------------VQG 755

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
            + D++   M          G  ++L VHDE+V E P+     A  L   +  N ++   
Sbjct: 756 TAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLD 814

Query: 661 LPLKAE 666
           +PL+ E
Sbjct: 815 VPLEVE 820


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 118/695 (16%), Positives = 213/695 (30%), Gaps = 175/695 (25%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63
           ID     + +      ++  +F  +          H+       +P       LK  LEN
Sbjct: 368 IDTETTSLDEMV--ARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLPFDEVLARLKPWLEN 425

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAVGEALKLSS 120
                +  +  ++R V     N  I +  +   T++ +       P  L ++ E      
Sbjct: 426 PAKKKLGQHIKYDRHV---FANHGIEVQGYAHDTMLQSYVLEAHRPHGLASLAERHL--- 479

Query: 121 QKMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                G+  I+    C    H+       P  +       EY   D   T ++   L P 
Sbjct: 480 -----GRSGISYEDLCGKGAHQI------PFSQVDIAKAAEYSCEDSDQTLDVHLALWPQ 528

Query: 179 SSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             ++++L ++ Q           +   G  +D       +  +      L+QE   +  G
Sbjct: 529 IERDEKLRFIYQLEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQEAYEIA-G 587

Query: 229 LVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F + GL +         +T + VL    +  P   ++  +R    
Sbjct: 588 QPFNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHR---- 643

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF-PPQNLPRPSRSHEELDQII 343
                                      G S+             N PR  R H    Q +
Sbjct: 644 ---------------------------GLSKLKGTYTDKLGQLAN-PRTGRVHTHYAQAV 675

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                  ++DP+   I         VR   IA  G  +  AD + IE R++A ++G++  
Sbjct: 676 AVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAPPGSVIASADYSQIELRIMAHISGDESL 735

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  G D++  T A  F   P QV+ +QR   KV+   L Y   +     +A   G+ 
Sbjct: 736 LRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIYGMSSF---GLARNLGIE 792

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A  +    A           +   +     A E  ++ T   R     R     ++
Sbjct: 793 TKAAASYIDRYFARYP------GVKAYMDETKALAKEKGYVETVFGR-----RLYLPEIN 841

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                                       P+G     R  G  R+
Sbjct: 842 S-------------------------------------------PNG----PRRGGAERA 854

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
            +N                     Q  + D++   M+         K    +++ VHDE+
Sbjct: 855 AINAPM------------------QGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDEL 896

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E P+ + E+  + +  LM         +PL AE
Sbjct: 897 VFEVPEAEIEWVRTEIPRLMAGVAE--LKVPLLAE 929


>gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 921

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 118/684 (17%), Positives = 203/684 (29%), Gaps = 162/684 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIGGDQAHGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPVNFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177
           ++  +  K  T + +          A    G Y   +  +T  + +           L+P
Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFETRLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            LS  E  L  +   I  +G  VD  L    +  +  + T L+ E  ++  G   +    
Sbjct: 517 VLSDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALECEAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLSELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRVHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELEGVTNDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T                              
Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVET------------------------------ 810

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  I  +R  +P +  K          PS R       G  R  +N          
Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRK------GAERMAINAPM------- 841

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA----TKAG--YDIVLTVHDEIVCETPDTDEFNAS 645
                      Q  + DI+ + M+       ++G    ++L VHDE+V E  +       
Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VE 887

Query: 646 MLYHL----MTSNPSWAKGLPLKA 665
            +       M+     A  L ++ 
Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/686 (16%), Positives = 208/686 (30%), Gaps = 152/686 (22%)

Query: 5   FIDFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            +D ET S  PID    GI     +    LF         +  +  +   + +V   ++ 
Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEETDDLFYIPLGHQTKK--ETTNQLSIEEVFSKIRT 441

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            +E+        NS F+R +    FN  + +       +LA                   
Sbjct: 442 WIEDPKKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN-----------NQE 487

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----------- 168
              + E    +  F K  + +    +NK            YC  DV +T           
Sbjct: 488 KHGLSEISFRLFGF-KPPSFKETVGKNKDFSFVDIDEASVYCGYDVFLTFKIVKIFKERF 546

Query: 169 -REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             E  + ++     E  L  +   +   G  +D+     L++ +      ++ ++  L  
Sbjct: 547 SMEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAE 606

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMR 282
           G   +    ++L   LF +  L  +   +T     T   VL                   
Sbjct: 607 G-NFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEI---------- 655

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                ++  ++    S+         P     +  R H   +Q 
Sbjct: 656 ---------------------IQYLIKHRTLSKLLSTYIDALPNLINEKTGRVHTNFNQA 694

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            T      +S+P+   I      S  +R   +  +  KL+ AD + IE R+LA +A E+ 
Sbjct: 695 ATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEI 754

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF   +D++  T    F     +++ D+R +GK +   + Y  G    +K A +TG+
Sbjct: 755 LINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGV 809

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       +      E +     F     E     A+   ++ T   R ++         
Sbjct: 810 STPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE--------- 854

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                             K DKN L  ++               
Sbjct: 855 ---------------------------------FKFDKNGLGRLIGKDPY---------- 871

Query: 578 SYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
                  +   R       L       +Q  S DI+   M+   K          ++L V
Sbjct: 872 ---EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQINKKFIEMNVPAKMLLQV 928

Query: 629 HDEIVCET-PDTDEFNASMLYHLMTS 653
           HDE++ E  PD+ E    ++   M  
Sbjct: 929 HDELLFEVEPDSLEITTKLVKKTMED 954


>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
 gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
          Length = 924

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/523 (16%), Positives = 165/523 (31%), Gaps = 85/523 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D     +  Y E   ++  +F   +         HD            + +VLK  LE++
Sbjct: 348 DTETTSLN-YME-AQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDWLLKVLKPLLEDS 405

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
            +  V  N  ++  +L+      I +       +LA    N + S       +L+  + K
Sbjct: 406 SIAKVGQNLKYDAHILRRY---GIKLRGIKNDTMLASYVFNSVGSRHDMDTLSLQYLNHK 462

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
             + +E+  +  K  T   +                 Y   D  +T  +   L       
Sbjct: 463 PIKFEEIAGKGAKQLTFNQI----------ELAQAAPYAAEDADITLRLHHILWDKVHQT 512

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                  L+  E  L  +   + + G  VD  +    ++ +  +  +L+Q+   +  G  
Sbjct: 513 GEQLASVLTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKLDELEQKAFEIA-GEE 571

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+  LF +  L +   T      T + VL       P    +  +R  A   
Sbjct: 572 FNLGSPKQLQQILFEKLELPVIKKTPKGAPSTAEEVLQELAHDYPLPDVILQHRSLA--- 628

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                       +         P    P   R H    Q +   
Sbjct: 629 ----------------------------KLKSTYTDKLPRMINPDTGRVHTSYQQAVAAT 660

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +++P+   I         VR   +A EG  +V  D + IE R++A ++ +   L+A
Sbjct: 661 GRLSSTEPNLQNIPIRTPEGRRVRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDASLLRA 720

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T +  F  +  +VT +QR   K +   L Y   A    +      L++  
Sbjct: 721 FAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNFGLIYGMSAFGLSRQ-----LDIPR 775

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                  +   E +     +    +E   +        G    
Sbjct: 776 HEAQAYMDKYFERFPGVLEYMENTRETAKKQGYVSTLFGRRLP 818



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 603 QAVSRDILAEGMMNA----TKAGY----DIVLTVHDEIVCET-PDTDEFNASMLYHLMTS 653
           Q  + DI+   M+       + G      +++ VHDE+V E   +  E  A  L  +M  
Sbjct: 843 QGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQVHDELVFEIRTEHAESYAKALADVMGE 902

Query: 654 NPSWAKGLPLKAE-GY 668
                  +PL AE G+
Sbjct: 903 AAD--LDVPLLAEYGF 916


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 115/700 (16%), Positives = 211/700 (30%), Gaps = 160/700 (22%)

Query: 12  SPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-----------VLK 58
           SP+  D     +  +  ++  +   +G     +      H   +              L 
Sbjct: 390 SPVALDTETTSLNPFQAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPLDQVLGALA 449

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +        N+ ++R +L       +P+   +   +LA        L+       L
Sbjct: 450 PWLSSAAHPKTLQNAKYDRLIL---LRHGLPLAGVVMDTLLADY------LRDANAKHGL 500

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
                     L        ++  L  +              YC  DV VT  +   L   
Sbjct: 501 ELLAQRNFGFL------PTSYSELVPKGANFSAVPMAQAALYCGMDVHVTYRLTPLLRGQ 554

Query: 176 -----EPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                EPL++     E  L  +   +   G  +D      L++ +     +L+ + +   
Sbjct: 555 LEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGELSRELKATLERLESDAKE-A 613

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRM 281
            G   +    ++L   LF   GL  +   +T     T   VL   +   P    V  +R 
Sbjct: 614 AGTDFNLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDATVLEKLEDAHPVVPLVLEHR- 672

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                           S+         P        R H + +Q
Sbjct: 673 ------------------------------TLSKLKSTYVDALPALMEAETGRVHTDFNQ 702

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +S+P+   I      S  +R   +   G  L+ AD + IE R+LA ++GE+
Sbjct: 703 AVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEAGWTLISADYSQIELRILAHLSGEE 762

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +KA+++G+D++  T    F+    +VT D+R +GK +   + Y  G    Q+ A  TG
Sbjct: 763 VLVKAYQSGDDVHALTARLLFDK--DEVTSDERRLGKTINFGVIYGMGV---QRFARETG 817

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +  +   + +     F     E     A+   ++ T   R +         
Sbjct: 818 VSQAEAKEFL--SKYKQRYPKVFAFL----ELQERLALSRGYVETILGRRRP-------- 863

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                                                D + L   L              
Sbjct: 864 ----------------------------------FAFDPSGLGRHL-------------G 876

Query: 577 RSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
           +  L        R      +L       +Q  S DI+   M+   +          ++L 
Sbjct: 877 KDPLEIELEVARRGGMEAQQLRAAANAPIQGSSADIIKLAMVQLQQRLTESALPARLLLQ 936

Query: 628 VHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  P+  E   ++    M    +    +PL  E
Sbjct: 937 VHDELVLEAAPEALETVLNLTRETMERAVT--LSVPLVVE 974


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/593 (17%), Positives = 187/593 (31%), Gaps = 98/593 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D     +  Y+    ++  +F             HD            + + L+  LEN 
Sbjct: 357 DTETTSLD-YS-KAQIVGVSFAVTPGKAAYVPLAHDYPGVPDQLDRSEILEKLRPLLENP 414

Query: 65  DVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
               +  N  ++  VL            D  +  ++      + N    A + +G     
Sbjct: 415 RKAKLGQNLKYDTHVLANHGIALRGIAHDTMLESYVLNSTATKHNMDDLAKEYLGVETIH 474

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----- 173
                 +G + I                      +      Y   D  +T ++ +     
Sbjct: 475 YEDVAGKGAKQIG-----------------FQEVSIDQAAPYAAEDADITLQLHQVLNAK 517

Query: 174 ------RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                  LE  S  E  L  +   I + G  +D A+    +  +  +   L+Q    L  
Sbjct: 518 LAQHPRLLELYSDMEVPLISVLARIENNGVLIDAAMLAQQSLELSSQIISLEQHAHDLA- 576

Query: 228 GLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           G   +    ++++  L+ +  L +         +T + VL       P    +   R   
Sbjct: 577 GQTFNLGSPKQIQDILYDQQKLPVLKKTPKGQPSTEESVLQELALDYPLPKLILEYRSL- 635

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                         S+         P Q   +  R H    Q I
Sbjct: 636 ------------------------------SKLKSTYTDKLPQQIDGQTGRIHTSYHQAI 665

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                  +SDP+   I         +R   IA EGKK+V AD + IE R++A ++ ++  
Sbjct: 666 AATGRLSSSDPNLQNIPIRSEEGRKIRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGL 725

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           LKAF   +D++  T A  F VAP QVT D R   K +   L Y   +     +A   GL+
Sbjct: 726 LKAFSEEQDVHRATAAEVFGVAPEQVTTDLRRSAKAINFGLIYGMSSF---GLAQQLGLS 782

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +     +    A           +   +   E A E  +I T   R +    + +SR +
Sbjct: 783 RSQAQSYIDLYFARYP------GVKNYMDRIREQAREQGYIETLFGR-RLYLPEINSRNA 835

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVY 570
                  +        G A    KR  +    ++ K++ +  +++     LV+
Sbjct: 836 ARRQYAERTAINAPMQGTAADIIKRAMIAADQWLYKEQPDAKMIMQVHDELVF 888


>gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 696

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 170 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 226

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 227 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 269

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 270 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 329

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 330 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 388

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 389 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 417

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 418 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 477

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 478 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 535

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 536 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 574

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 575 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 602

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 603 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 644

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 645 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 686


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 98/601 (16%), Positives = 203/601 (33%), Gaps = 88/601 (14%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68
            +D    GI        ++  +F F ++         +      +  + K A EN D   
Sbjct: 362 SLDTETTGIDPI--TAELVGMSFSFAENQAFYVPVPANREEALTIVNIFKPAFENPDSLK 419

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124
           +  N  ++  +L    N  + +   +   ++A     P     +  + E  LK  + K+E
Sbjct: 420 IGQNIKYDLIMLA---NYGVTLKGKMFDTMIAHYVLQPELRHGMDYLAEIYLKYETIKIE 476

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------- 177
              ELI    KG+    + D              +Y   D  VT ++ + LE        
Sbjct: 477 ---ELIG--AKGKKQGNMRDLAP-------EAVYKYACEDADVTLKLKQVLENELETNGV 524

Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G  +D       ++       ++++E+  L  G+  +  
Sbjct: 525 KKLFEEIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHQLA-GMEFNIA 583

Query: 235 CLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +++   LF     +     T+T    T + VL S +       ++  +R         
Sbjct: 584 SPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR--------- 634

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G  +         P    P   R H   +Q +T     
Sbjct: 635 ----------------------GLKKLLGTYIDALPQLINPATGRIHTSFNQTVTATGRL 672

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +S+P+   I         +R   I  EG +   AD + IE R++A ++ +   ++AF+ 
Sbjct: 673 SSSNPNLQNIPIRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIEAFQK 732

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +D++  T A+ + V   +VT++QR+  K     + Y         +A    ++      
Sbjct: 733 DQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGIIYGISVF---GLAERLNVDRKEAKA 789

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           L+        +E+  N   +M ++  E A E  +I T  +R K+     +S+ + +    
Sbjct: 790 LIDG-----YFENYPNVKAYMDQSIQE-AREKGYIETIFKR-KRYLPDINSKNAVVRGYA 842

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTT 583
            +        G A    K   + +    +++     ++L     L +  +   +  +   
Sbjct: 843 ERNAINAPIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELNFSVLPEEKEKVQQI 902

Query: 584 T 584
            
Sbjct: 903 V 903


>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
 gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
          Length = 939

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 122/702 (17%), Positives = 208/702 (29%), Gaps = 179/702 (25%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID     +   A +  ++  +  F           H     P+ L         K  LEN
Sbjct: 357 IDTETTSLD--AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQYVLDRLKPHLEN 414

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAV-GEALKLS 119
           + +  +  N  +++ V     N  I ++  +   +LA     + L   L  + G  L L 
Sbjct: 415 SALKKIGQNLKYDQHV---FANYGIALNGIVGDAMLASYIIESHLGHGLDELSGRWLGLE 471

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171
           +   E         C     +            A     EY   D      +        
Sbjct: 472 TITYES-------LCGKGAKQIG------FADVAIGPATEYAAQDADFALRLEAHLRAQM 518

Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             K+LE     E  +  +   +   G  +D A     +  +  E  KL+QE  +   G  
Sbjct: 519 DDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYA-AAGQP 577

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    ++L+  LF + G+  + L +T      T + VL       P    +  NR  A 
Sbjct: 578 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSLA- 636

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P    PR  R H    Q + 
Sbjct: 637 ------------------------------KLKSTYTDKLPEMISPRDKRVHTTYAQAVA 666

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  ++P+   I         VR    A  G  +V AD + IE R++A ++G++  +
Sbjct: 667 ITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     K      L+ 
Sbjct: 727 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 786

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                          K    +  +R   
Sbjct: 787 -----------------------------------------------KNFIDRYFARYPG 799

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRS 578
           +   + +A E     G       RR               L LP  R           R+
Sbjct: 800 VAEYMQRARECAAGQGYVETLFGRR---------------LYLPDIRHTNANIRARAERA 844

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------------AGYDIV 625
            +N                     Q  + D++   M++ ++                 ++
Sbjct: 845 AINAPM------------------QGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLI 886

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P+ + +     L  +M +       +PL AE
Sbjct: 887 MQVHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLAAE 928


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/592 (17%), Positives = 194/592 (32%), Gaps = 93/592 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEAL 61
           D ET S   L             ++  AF ++ H     PV         V+ + L+   
Sbjct: 374 DTETTSLDPLE----------AELVGIAFSWEAHKGFYLPVPEGREAAGEVL-EELRPFF 422

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120
           E+  +  V  N  ++  VL       IP+   +   +LA     P         A    +
Sbjct: 423 ESDTIEKVGQNLKYDIKVLSTY---GIPVRGPLFDTMLAHYLINPDMRHNMDVLAETYLN 479

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
                  +LI +  K      L  R+ P   +      EY   D  +T ++ +   P   
Sbjct: 480 YTPVPISDLIGKKGK----NQLSMRDVPLEDQ-----TEYAVEDADITLQLAQLFGPELR 530

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                      E  L  +   +   G  +D      L+  ++ +   L  ++     G  
Sbjct: 531 EAQTEELFKEIEIPLLRVLADMELEGINLDTGFLEKLSGELEKDIEGLVGKIYE-AAGEE 589

Query: 231 SSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
            +    ++L   LF +  L      T T    T + VLS   K       V         
Sbjct: 590 FNIGSPKQLGEILFDKMKLVDKPKKTRTGQYSTAEDVLSGLAKEHEIVQMVL-------- 641

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                   + G ++         P Q  P   R H +  Q +  
Sbjct: 642 -----------------------DYRGLTKLKSTYVDALPQQVAPSTGRVHTDYMQTVAA 678

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                +++P+   I         +R   I  S   +L+ AD + IE R++A ++ E   +
Sbjct: 679 TGRLSSNNPNLQNIPIRTERGRQIRKAFIPRSPEYQLLAADYSQIELRIIAALSEEDTMI 738

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           ++F+ GED++  T A+ F V   +VT++QR+  K +   + Y   A     +++ T L+ 
Sbjct: 739 ESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTNLSR 795

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                L+ T    + +    N+     +   EH      +G      ++  +  +   + 
Sbjct: 796 TEAKELIDTYY--KTYPKLRNYISDQIDFAREHGYVQTVLGR-----RRYLKDINGSNAV 848

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
           +     +        G A    K   + +    ++ N    ++L     LV+
Sbjct: 849 VRGAAERNAVNAPIQGSAADIIKIAMIRIYQKLREGNFKTRMLLQVHDELVF 900



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 22/150 (14%)

Query: 528 FEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            ++ I+       + R  +   +   ++   +  +L   R L       + +  N   R 
Sbjct: 798 AKELIDTYYKTYPKLRNYISDQIDFAREHGYVQTVLGRRRYL------KDINGSNAVVRG 851

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD 640
                          +Q  + DI+   M+   +          ++L VHDE+V +    +
Sbjct: 852 AAERNA-----VNAPIQGSAADIIKIAMIRIYQKLREGNFKTRMLLQVHDELVFDCYRGE 906

Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAE-GY 668
                +++   M S    A  +PL  + G+
Sbjct: 907 ADTVSALIKSEMESAYELA--VPLVVDMGF 934


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  +  +A N  ++  V++      I    +  T++++             P +
Sbjct: 162 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 218

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  +                             Y   D  VT
Sbjct: 219 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 261

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 262 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 321

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL        P  
Sbjct: 322 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 380

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P+  
Sbjct: 381 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 409

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KL+ AD + IE RV
Sbjct: 410 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 469

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 470 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 527

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 528 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 566

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 567 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 594

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 595 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 636

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E P+ + E    ++  +M +    A  L  PL+ + 
Sbjct: 637 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 678


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 102/533 (19%), Positives = 176/533 (33%), Gaps = 135/533 (25%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTL 207
           F E       ++  +F+ L P             E+ L  +   +  RG  +DV L   L
Sbjct: 400 FTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEAL 459

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----V 262
           +  ++ E  +L+ E+  L  G   +    ++L+  LF E GL     TE T +R      
Sbjct: 460 SFELEKEMERLEGEVFRLA-GHPFNLNSRDQLEKVLFDELGLTPVGRTEKTGKRSTAQGA 518

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L + +   P    +                                Q+   S+       
Sbjct: 519 LEALRGAHPIVELIL-------------------------------QYRELSKLKSTYLD 547

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377
             P    PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+
Sbjct: 548 PLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLL 607

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V    R   K +  
Sbjct: 608 AADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNF 667

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y   A    +++   G++                +++AE F     ++ P+      
Sbjct: 668 GVLYGMSA---HRLSQELGID----------------YKEAEAFIERYFQSFPK------ 702

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                     +AW ++          +              +  +RR VP +  +     
Sbjct: 703 ---------VRAWIERTLEEGRTRGYVE------------TLFGRRRYVPDLASRVRS-- 739

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM--- 614
                              R   N                    VQ  + D++   M   
Sbjct: 740 -------------VREAAERMAFNMP------------------VQGTAADLMKIAMVKL 768

Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                  G  ++L VHDE+V E P+     A  L   +  N ++   +PL+ E
Sbjct: 769 FPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLDVPLEVE 820


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 102/533 (19%), Positives = 176/533 (33%), Gaps = 135/533 (25%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTL 207
           F E       ++  +F+ L P             E+ L  +   +  RG  +DV L   L
Sbjct: 400 FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEAL 459

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----V 262
           +  ++ E  +L+ E+  L  G   +    ++L+  LF E GL     TE T +R      
Sbjct: 460 SFELEKEMERLEGEIFRLA-GHPFNLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQGA 518

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L + +   P    +                                Q+   S+       
Sbjct: 519 LEALRGAHPIVELIL-------------------------------QYRELSKLKSTYLD 547

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377
             P    PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+
Sbjct: 548 PLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLL 607

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V    R   K +  
Sbjct: 608 AADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNF 667

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y   A    +++   G++                +++AE F     ++ P+      
Sbjct: 668 GVLYGMSA---HRLSQELGID----------------YKEAEAFIERYFQSFPK------ 702

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                     +AW ++          +              +  +RR VP +  +     
Sbjct: 703 ---------VRAWIERTLEEGRTRGYVE------------TLFGRRRYVPDLASRVRS-- 739

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM--- 614
                              R   N                    VQ  + D++   M   
Sbjct: 740 -------------VREAAERMAFNMP------------------VQGTAADLMKIAMVKL 768

Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                  G  ++L VHDE+V E P+     A  L   +  N ++   +PL+ E
Sbjct: 769 FPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLDVPLEVE 820


>gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
 gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
          Length = 964

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 120/670 (17%), Positives = 224/670 (33%), Gaps = 156/670 (23%)

Query: 36  GFDDHPVEL--WDCVH--DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            + + P +L      H     +P       L+  LE+        N+ F+R +L+     
Sbjct: 401 AWGEEPDQLAYIPLGHEEGEQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRHQ--- 457

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECL 142
            I +   +   +LA     P    +L A+ +  LKL +                 ++  L
Sbjct: 458 GIELAGVVFDTMLASYLLNPSLGHSLDALADRWLKLQT----------------RSYSDL 501

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQT 191
             + K   + A     +YC  DV V + +   L+            L + E  L  +   
Sbjct: 502 VPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAE 561

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           + DRG  +D      L++ +  E  +L+    +L  G   +    ++L   LF + GL++
Sbjct: 562 MEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLA-GDRFNLGSPKQLSELLFEKLGLNV 620

Query: 252 EDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +   +T     T   VL   +   P    +  +   A   +   ++ L   + +DG    
Sbjct: 621 KKSRKTKTGYSTDAAVLEKLQGDHPIIDLILEHCTLAKLKSTY-VDALPSLVAADG---- 675

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
                                      R H + +Q +T      +S+P+   I      S
Sbjct: 676 ---------------------------RIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFS 708

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +  EG  L  AD + IE R+LA ++ E   L+A+  G+D++  T +  F+   
Sbjct: 709 RQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR-- 766

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            ++T ++R IGK++   + Y  GA   Q+ A  TG +       +      + +     +
Sbjct: 767 EEITSEERRIGKIINFGVIYGMGA---QRFARETGSSTKEAQGFIDRFY--DRYPRVFTY 821

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            +    +    AI   ++ T   R +                                  
Sbjct: 822 LQ----SLERQAIARGYVETVLGRRR---------------------------------- 843

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                   Y   +       L   R      +  ++   +    QL R            
Sbjct: 844 --------YFDFEDTG----LQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAP------ 885

Query: 602 VQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPS 656
           +Q  S DI+   M+            ++L VHDE+V E P  +  + +  +   M     
Sbjct: 886 IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQAVQ 945

Query: 657 WAKGLPLKAE 666
               +PL  E
Sbjct: 946 --LTVPLAVE 953


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/605 (14%), Positives = 184/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         D      + +  
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N    +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGAVVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  +T ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADITLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  ++++E+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +   +     T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPLLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   +   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 105/635 (16%), Positives = 189/635 (29%), Gaps = 138/635 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE   V  +  N  ++  V+      +I I  +  T++L+              
Sbjct: 452 DELKALLEEPAVLKIGQNLKYDMLVMAQH---NIEIKSFDDTMLLSYVLDAGQG------ 502

Query: 115 ALKLSSQKMEE---GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                   + E   G + I      +          P  + A      Y   D  VT  +
Sbjct: 503 --GHGMDALSERWLGHKTIGY----KDVTGSGKSAIPFAQVAIDKATAYAAEDAEVTLRL 556

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +  L+     E          + L  +   +  RG  VD  +   L+  +      L+ E
Sbjct: 557 WHALKVRLVSEGMTSVYERLERPLAPVLMRMEQRGIRVDRQILSRLSGELAQGAAALEAE 616

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           ++ L  G   +    ++L   LF +  L     T+T      +   +    A        
Sbjct: 617 IQELA-GENFNVGSPKQLGEILFDKMSLPGGSKTKTGQWSTSAQALEDLAAAGHELP--- 672

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                  R  + +   ++         P    P   R H     
Sbjct: 673 -----------------------RKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSFAM 709

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      +SDP+   I         +R+  +A  G  L+ AD + IE RVLA +A   
Sbjct: 710 AATTTGRLSSSDPNIQNIPVRTAEGRKIRTAFVAEPGNVLISADYSQIELRVLAHVANIP 769

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+   
Sbjct: 770 QLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAF---GLANQLS 826

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +                                            R+   R
Sbjct: 827 IERSEAGDYI--------------------------------------------RKYFER 842

Query: 517 VSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
              + + +     +  ENG    I  +R   P +             P  R+       N
Sbjct: 843 FPGIKDYMDATKAEAKENGYVTTIFGRRAHYPEIRSSN---------PQVRAF------N 887

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R+ +N   +         G   + I +A+ R    E  + A      ++L VHDE++ E
Sbjct: 888 ERAAINAPIQ---------GSAADIIRRAMVR---MEPALEAAGMQARMLLQVHDELIFE 935

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGL--PLKAEG 667
           T + D      ++  +M +    A  +  PL+ + 
Sbjct: 936 TAEADADKIIPVIVEVMENAAMPAIDMAVPLQVDA 970


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 108/582 (18%), Positives = 186/582 (31%), Gaps = 101/582 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMP 54
             + +D ET S   +T            ++  +  F           H          + 
Sbjct: 352 RQIGLDTETNSLDPMT----------AKLVGISMAFAAGDAVYIPVAHTLAEQLDWQEIS 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKA 111
             LK  LE+ ++  +  N  +++ + K   N  I +       +LA     + L   L  
Sbjct: 402 GSLKPFLEDKNLAKIGQNLKYDQHIFK---NHGIDLQGIAGDAMLASYIVESHLSHNLDD 458

Query: 112 VGEA-LKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +    L L +   E         C KG       D N            EY   D     
Sbjct: 459 LAMRWLGLETISYES-------LCGKGAKQISFADVNV-------AQATEYACQDADFAL 504

Query: 170 EIFKRL---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            I + L         E   + E  +  +   +   G  +D A     +  +  E  +L+Q
Sbjct: 505 RIEQHLRTQMDAQQIEIYENMELPVAQVLFQMERAGVHLDCAELAQQSTELGTELLQLEQ 564

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAI 274
           +   L  G   +    ++L+  LF + G+  + + +T      T + VL       P   
Sbjct: 565 QAYDLA-GQPFNLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDESVLEKLADDYPLPK 623

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  NR  A                               +         P    P+  R
Sbjct: 624 LILQNRSLA-------------------------------KLKSTYTDKLPEMINPQTGR 652

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q +       +++P+   I         VR    A +G  +V AD + IE R++
Sbjct: 653 VHTNYAQAVAITGRLASNNPNLQNIPIRTKQGRRVRRAFNAPDGYLIVSADYSQIELRIM 712

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++G+     AF+  ED++  T A  F VAP ++T +QR   K +   L Y  G     
Sbjct: 713 AHLSGDATLQAAFQNNEDVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMGEY--- 769

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A + G++  + A  +K   A               +   EHA +  F+ T   R K  
Sbjct: 770 GLAKSLGIDNVSAAMFIKRYFARYT------GVAEYMQRTKEHAQQFGFVETLFGR-KLY 822

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
               HS  +       +A       G A    K+  + +   
Sbjct: 823 LPDIHSNHAMKRAGAERAAINAPMQGTASDLIKKAMIDVSKF 864


>gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone
           ASNC3046]
          Length = 976

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 113/692 (16%), Positives = 204/692 (29%), Gaps = 164/692 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----------PVM 53
            +D ET S   +        AE V + L   G ++  +      H              +
Sbjct: 384 SLDTETNSLNPIN-------AELVGIGL-CLGEENDDLFYIPLGHQTKKGTSNQLSIEDV 435

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              L+  +E+        NS F+R +    FN  + +       +LA             
Sbjct: 436 FSKLRNWIEDPKKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN-------- 484

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                    + E    +  F K    +    +NK            YC  DV +T +I K
Sbjct: 485 ---NQEKHGLSEISFRLFGF-KPPLFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVK 540

Query: 174 RLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             +                 E  L  +   +   G  +D+     L++ +      ++ +
Sbjct: 541 IFKESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESK 600

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQV 276
           +  L  G   +    ++L   LF +  L  +   +T     T   VL            +
Sbjct: 601 VYELA-GENFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHL 659

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R                                 S+         P     +  R H
Sbjct: 660 IKHR-------------------------------TLSKLLSTYIDALPNLINEKTGRVH 688

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
              +Q  T      +S+P+   I      S  +R   +  +  KL+ AD + IE R+LA 
Sbjct: 689 TNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAH 748

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A E+  + AF   +D++  T    F     +++ ++R +GK +   + Y  G    +K 
Sbjct: 749 LADEEILINAFHKNDDIHSLTARLIF--EKEEISSEERRVGKTINFGVIYGMG---IKKF 803

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A +TG++       +      E +     F     E     A+   ++ T   R ++   
Sbjct: 804 ARSTGVSTPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE--- 854

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                                   K DKN L  ++         
Sbjct: 855 ---------------------------------------FKFDKNGLGRLIGKDPY---- 871

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------Y 622
                        +   R       L       +Q  S DI+   M+   K         
Sbjct: 872 ---------EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNIPA 922

Query: 623 DIVLTVHDEIVCET-PDTDEFNASMLYHLMTS 653
            ++L VHDE++ E  PD+ E    ++   M  
Sbjct: 923 KMLLQVHDELLFEVEPDSLEITTKLVKKTMED 954


>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
          Length = 931

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 124/702 (17%), Positives = 221/702 (31%), Gaps = 181/702 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           +D ET S +D         A    ++  +F             H  P  P  L       
Sbjct: 359 LDTET-SALD---------AMRAQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLEQVLA 408

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAV 112
             K  LE+     +  +  ++R V     N  I +  +   T++ +       P  L ++
Sbjct: 409 RLKPWLEDARHAKLGQHIKYDRHV---FANHGIEVRGYVHDTMLQSYVLEVHKPHNLASL 465

Query: 113 GEALKLSSQKMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            E           G+  +     C    H+       P  + +      Y   D   T E
Sbjct: 466 AERH--------TGRTGLNYEDLCGKGVHQI------PFAQVSVDKAATYACEDSDQTLE 511

Query: 171 IFKRLEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + + L PL    + L   + L+         +   G  +D AL    +  +     +L+ 
Sbjct: 512 VHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSHALGQRILRLET 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           E   +  G   +    ++L    F + G+ +   T T    T + VL       P   ++
Sbjct: 572 EAYEIA-GQPFNLNSPKQLGEIFFDKLGMPVVRKTTTGARSTNEEVLEKLAADYPLPARL 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R                                 S+             LPR  R H
Sbjct: 631 LEHRSL-------------------------------SKLKSTYTDKLGLLALPRTGRVH 659

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q +       +SDP+   I         +R   +A  G+ +  AD + IE R++A 
Sbjct: 660 THYAQAVAVTGRLSSSDPNLQNIPVRTPEGRRIREAFVAPPGRVIASADYSQIELRIMAH 719

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G+   L AF  G D++  T A  F V  ++V+ +QR   KV+   L Y   +     +
Sbjct: 720 ISGDPSLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVINFGLIYGMSSF---GL 776

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   GL+                   A+N+ +   E +P               V++   
Sbjct: 777 AKNLGLDRQA----------------AKNYIQRYFERYP--------------GVRQYME 806

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +  +R   L       + +T+   +                       LMLP   S    
Sbjct: 807 ETKARAKSL------GYVETVFGRR-----------------------LMLPEINSPNGP 837

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIV 625
                                         +Q  + D++ + M      ++A K    ++
Sbjct: 838 RRAAAERAA-----------------INAPMQGTAADLIKKAMVAVQARLDAEKPEILMI 880

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P+   ++  + +  LM      A  +PL AE
Sbjct: 881 MQVHDELVFELPENAVDWLRAEVPRLMAGVA--ALRVPLLAE 920


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 93/587 (15%), Positives = 191/587 (32%), Gaps = 71/587 (12%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVA 70
           D    G    A    ++  +F              +      + +  +  LEN ++  + 
Sbjct: 371 DTETTGTD--ANLAELVGLSFSIKPGEGYYIPVPAEMEAAQQIVEEFRPVLENENIVKIG 428

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            N  ++  +LK      I +   +   +LA     P     +     LS   +      I
Sbjct: 429 QNIKYDMLILKWY---GISVKGRLFDTMLAHYLIDPDTRHNMD---VLSENYLNYSPISI 482

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181
                 +       R+ P          +Y   D  +T ++    EPL  +         
Sbjct: 483 TTLIGPKGKSQGTMRDVPV-----EKVVDYAAEDADITLQLANVFEPLLKQLNAEKLATE 537

Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L Y+   I   G  +D+      ++ ++++  K +Q +     G+  +    ++L 
Sbjct: 538 VENPLIYVLADIEKEGVRIDMDTLINYSKELELDIRKFEQSVYDKC-GIKFNLASPKQLG 596

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             LF +                     +L P+A +    + +     +L L    + +  
Sbjct: 597 EVLFDKL--------------------QLDPKAKKTKTGQYQTGEDVLLALAHKSDIVQD 636

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                  L F    +         P    P+  R H   +Q +       +++P+   I 
Sbjct: 637 ------ILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSFNQAVAATGRLSSNNPNLQNIP 690

Query: 361 -----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   VR   I   E   L+ AD + IE R++A ++ E+  L AF+ G D++  T A
Sbjct: 691 IRTERGREVRKAFIPRDENHILLSADYSQIELRIIADISKEENMLDAFKNGIDIHTATAA 750

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           R + +A  +VT  QR   K +   + Y   A    +     G+     A +++      +
Sbjct: 751 RVYGIAIEEVTPTQRRNAKAVNFGIIYGQSAFGLSQ---NLGIPRKEAAEIIE--QYFTQ 805

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           +   + +         E+     F+ T   R ++  R  +S    +     +        
Sbjct: 806 YPGIKRYMSDTMNFARENG----FVETILGR-RRYLRDINSANQTVRGFAERNAINAPIQ 860

Query: 535 GKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580
           G A    K   + +    +D+     + +     LV+  + +    +
Sbjct: 861 GSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVFDVLKSEVEAM 907


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 112/689 (16%), Positives = 203/689 (29%), Gaps = 166/689 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMP---------QVLKEALENT 64
           D    G+     +  +I  +F             HD    P           LK  LEN 
Sbjct: 347 DTETDGLDII--NANLIGLSFAITPGEAAYLPLAHDYSDAPIQLDRTLVLDKLKPLLENP 404

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
               V  N  F++++L  C    I +       +L     N +         + +    K
Sbjct: 405 QKQKVGQNLKFDKSILARC---GIVLQGIAFDTMLESYILNTVAGRHDMDSLSQRYLQHK 461

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
               +E+  +     T   +          A      Y   D  +T  +   L P   + 
Sbjct: 462 TITFEEIAGKGKSQLTFNQI----------ALEQAAPYAAEDADITLRLHHCLWPQLQQS 511

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   I   G  +D A+    +Q +    T+L+++   L      
Sbjct: 512 KALSWIFTHIEMPLLSVLSRIESTGVLIDRAVLAQHSQELTTRLTELEEQAHLLA-EEPF 570

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+T L+ +  L +   T      T + VL+      P A  +   R       
Sbjct: 571 NLASPKQLQTILYEKQQLPVLKKTPKGAPSTDEEVLAELALDYPLAKVLLEYR------- 623

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G ++         P    P   R H    Q +T   
Sbjct: 624 ------------------------GLAKLKTTYTDKLPSMINPTSGRVHTSYHQAVTVTG 659

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              + +P+   I         +R   IA  G +++ AD + IE R++A ++ +   +KAF
Sbjct: 660 RLSSREPNLQNIPIRSEEGRRIRQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIKAF 719

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              +D++  T A  FNV+    T +QR   K +   L                G++    
Sbjct: 720 TADKDIHRATAAEVFNVSVETATDEQRRSAKAINFGLI--------------YGMSAFGL 765

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  +          +A+++       +P                             + N
Sbjct: 766 ARQLGIARV-----EAQHYIDLYFARYP----------------------------GVAN 792

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            +    +Q    G                            SGR L   D+         
Sbjct: 793 YMEAIRKQAATQGYVTTL-----------------------SGRRLYLPDI--------N 821

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEIVCETP 637
            +  + R+     +     +Q  + DI+   M+             +++ VHDE+V E  
Sbjct: 822 ASSAMRRKAAER-EAINAPMQGTAADIIKSAMIEIDAWLQHQPLVRMIMQVHDELVFEVH 880

Query: 638 DT-DEFNASMLYHLMTSNPSWAKGLPLKA 665
           ++  +     + HLM       K +PL  
Sbjct: 881 ESVVQGAVEKIRHLMEQTTE--KSMPLTV 907


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 96/596 (16%), Positives = 186/596 (31%), Gaps = 95/596 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59
           L ID ET     +             ++  +F   ++         +      +   L+ 
Sbjct: 381 LSIDTETTGTEPME----------AELVGMSFSDAENRAYYVPVPANRDEALKIVNELRP 430

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEAL 116
             EN +   V  N  ++  VL+   N  + +   +   +LA     P     +  + E  
Sbjct: 431 LYENENSMKVGQNIKYDMIVLQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEI- 486

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +     ELI              R+ P           Y   D  VT ++   LE
Sbjct: 487 -YLQYQTIHIDELIG----ARGKNQKNMRDLPAED-----VYRYACEDADVTLKLKNVLE 536

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++   +   ++++E+ +L 
Sbjct: 537 KELKEQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYALA 596

Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            G   +    +++   LF     +     T+T    T + VL S +       ++     
Sbjct: 597 GGETFNIASPKQVGEVLFDRLKIVDKAKKTKTGQYVTSEEVLESLRSKHAIIGKILE--- 653

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                       + G  +         P    PR  R H   +Q
Sbjct: 654 ----------------------------YRGLKKLLSTYIDALPQLINPRTGRIHTSFNQ 685

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +S+P+   I         +R   I  +G +   AD + IE R++A ++ ++
Sbjct: 686 AVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDK 745

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF +G D++  T A+ + V    VT D R   K     + Y         +A    
Sbjct: 746 NMIDAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVF---GLAERMN 802

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +       L+        + +     +   +   + A E+ ++ T   R K+     +SR
Sbjct: 803 VPRQEAKELIDG------YFETYPQVKEYMDRSIQVARENGYVETIFHR-KRFLPDINSR 855

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570
            + +     +        G A    K   + L+  +   NNL   ++L     L +
Sbjct: 856 NAVVRGYAERNAINAPIQGSAADIIK-VAMSLICQRLQSNNLKAKMILQVHDELNF 910


>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
 gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
          Length = 938

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 120/701 (17%), Positives = 208/701 (29%), Gaps = 177/701 (25%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID     +   A +  ++  +  F           H     P+ L         K  LEN
Sbjct: 356 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGRLKPHLEN 413

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119
             +  +  N  +++ V     N DI ++      +LA     + L   L  + E  L L 
Sbjct: 414 PALKKIGQNLKYDQHV---FANYDIALNGIAGDSMLASYIIESHLGHGLDELSERWLGLE 470

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171
           +   E         C     +            A     EY   D      +        
Sbjct: 471 TITYES-------LCGKGAKQIS------FADVAIVQATEYAAQDADFALRLEAHLRAQM 517

Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             K+LE     E  +  +   +   G  +D A     +  +  E  KL+QE  +   G  
Sbjct: 518 DDKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 576

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    ++L+  LF + G+  + L +T      T + VL       P    +  NR  A 
Sbjct: 577 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA- 635

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P    P+  R H    Q + 
Sbjct: 636 ------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +++P+   I         VR    A +G  +V AD + IE R++A ++G++  +
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G      +A +  ++ 
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY---GLAKSLSIDN 782

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            +                                             K    +  +R   
Sbjct: 783 ISA--------------------------------------------KNFIDRYFARYPG 798

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +   + +  EQ    G                        +    GR L   D+ N    
Sbjct: 799 VAEYMQRTKEQAAAQG-----------------------FVETLFGRRLYLPDIHNK--- 832

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------------TKAGYDIVL 626
            N   R                +Q  + D++   M++                    +++
Sbjct: 833 -NANARAGAERAA-----INAPMQGTASDLIKRAMIDVSCWLSECEASPWDDLLQSKLIM 886

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            VHDE+V E P+ + +     L  +M         +PL AE
Sbjct: 887 QVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 927


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
          Length = 949

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 89/605 (14%), Positives = 184/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET     +          D  ++  +F   ++         D      + +  
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N    +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGAVVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  +T ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADITLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  ++++E+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +   +     T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPLLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   +   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 102/533 (19%), Positives = 176/533 (33%), Gaps = 135/533 (25%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTL 207
           F E       ++  +F+ L P             E+ L  +   +  RG  +DV L   L
Sbjct: 400 FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEAL 459

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----V 262
           +  ++ E  +L+ E+  L  G   +    ++L+  LF E GL     TE T +R      
Sbjct: 460 SFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQGA 518

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L + +   P    +                                Q+   S+       
Sbjct: 519 LEALRGAHPIVELIL-------------------------------QYRELSKLKSTYLD 547

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377
             P    PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+
Sbjct: 548 PLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLL 607

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V    R   K +  
Sbjct: 608 AADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNF 667

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y   A    +++   G++                +++AE F     ++ P+      
Sbjct: 668 GVLYGMSA---HRLSQELGID----------------YKEAEAFIERYFQSFPK------ 702

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                     +AW ++          +              +  +RR VP +  +     
Sbjct: 703 ---------VRAWIERTLEEGRTRGYVE------------TLFGRRRYVPDLASRVRS-- 739

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM--- 614
                              R   N                    VQ  + D++   M   
Sbjct: 740 -------------VREAAERMAFNMP------------------VQGTAADLMKIAMVKL 768

Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                  G  ++L VHDE+V E P+     A  L   +  N ++   +PL+ E
Sbjct: 769 FPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLDVPLEVE 820


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
             P +L        + + LK  LE+ + TI+  N  ++  VL       + I       +
Sbjct: 365 GAPAQL----DKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417

Query: 99  LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           LA      S+        ALK   + M + +++  +  K  +   +              
Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205
              Y   D  VT ++  +L PL  KE             L  +   +  RG  VD A+  
Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQ 527

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261
             +  +      L+Q+   L  G   +    ++L+T L+ E  L +         +T + 
Sbjct: 528 AQSIELGGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL       P    +  +R                                 ++      
Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P Q  P   R H   +Q +T      +++P+   I         +R   IA  G ++
Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K + 
Sbjct: 676 VAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y   +     +    G+  +     +                    +     A   
Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAKEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R +      H+   +      +A       G A       D+  + M K  +
Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                                                   L +N V+A            
Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                  +++ VHDE+V E  + D E     +   M      A  +PL  +
Sbjct: 849 ------HLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score =  270 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 176/534 (32%), Gaps = 137/534 (25%)

Query: 157 FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTL 207
           F E       ++  +F+ L P             E+ L  +   +  RG  +DV L   L
Sbjct: 400 FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEAL 459

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----V 262
           +  ++ E  +L+ E+  L  G   +    ++L+  LF E GL     TE T +R      
Sbjct: 460 SFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQGA 518

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L + +   P    +                                Q+   S+       
Sbjct: 519 LEALRGAHPIVELIL-------------------------------QYRELSKLKSTYLD 547

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377
             P    PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L+
Sbjct: 548 PLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLL 607

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V    R   K +  
Sbjct: 608 AADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNF 667

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y   A    +++   G++                +++AE F     ++ P+      
Sbjct: 668 GVLYGMSA---HRLSQELGID----------------YKEAEAFIERYFQSFPK------ 702

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                     +AW ++          +              +  +RR VP +  +     
Sbjct: 703 ---------VRAWIERTLEEGRTRGYVE------------TLFGRRRYVPDLASRVRS-- 739

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM--- 614
                              R   N                    VQ  + D++   M   
Sbjct: 740 -------------VREAAERMAFNMP------------------VQGTAADLMKIAMVKL 768

Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
                  G  ++L VHDE+V E P+     A  L   +M +   +   +PL+ E
Sbjct: 769 FPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENT--YPLDVPLEVE 820


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 94/590 (15%), Positives = 183/590 (31%), Gaps = 91/590 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D     +  Y     ++  +F  +          HD    P+ L         K  LE+ 
Sbjct: 362 DTETTSVH-YM-KAELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWVLAQLKPLLESK 419

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
            +  +  N  ++  VL      DI +       ++     N + +       ALK    +
Sbjct: 420 TIKKIGQNLKYDANVLSHY---DIALQGIEFDTMIESYCYNSVATRHNMDALALKYLDYQ 476

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
               +++  +  K  T   +               G Y   D  +T  +   + P     
Sbjct: 477 TVHFEDVAGKGAKQLTFNQI----------DIEKAGHYAAEDADITLRLHHAIFPALAET 526

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                  +  E  L  +   +   G  +D  +    +  +     +L+ E  +L  G   
Sbjct: 527 ASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILAEQSFTLGQRLDELEIEAHNLA-GKSF 585

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L+  LF +  + +   T      T + VL       P    +  NR       
Sbjct: 586 NLASPKQLQQILFEDLKIPVIKKTPKGAPSTAEEVLQELALDYPLPKVILENR------- 638

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G S+         P     + +R H    Q +T   
Sbjct: 639 ------------------------GLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAVTATG 674

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              ++DP+   I         +R   IA +  K+V  D + IE R++A ++ ++  + AF
Sbjct: 675 RLSSTDPNLQNIPIRSEQGRKIRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKGLVTAF 734

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T A  F V   +VT DQR   K +   L Y   A     +A    +     
Sbjct: 735 SEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSAF---GLAKQLHIGRQQA 791

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                   E+  + A E  ++ T   R +      +++      
Sbjct: 792 QEYQDKYFQRYP------GVLTYMEDTRQQASEQGYVETLYGR-RLYLPDINAKNGMRKK 844

Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +A       G A  II +    V    ++++ + + + +     L++
Sbjct: 845 AAERAAINAPMQGTAADIIKKAMLAVDSWLLEQNDDRIKMTMQVHDELIF 894



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 19/111 (17%)

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD- 623
           GR L   D+           +   R+           +Q  + DI+ + M+       + 
Sbjct: 827 GRRLYLPDI---------NAKNGMRKKAAERAAINAPMQGTAADIIKKAMLAVDSWLLEQ 877

Query: 624 ------IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
                 + + VHDE++ E   D  E   + L  LM         +PL AE 
Sbjct: 878 NDDRIKMTMQVHDELIFEIHQDIVEETTAKLVTLMNDAVE--LSVPLIAEA 926


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 121/694 (17%), Positives = 217/694 (31%), Gaps = 166/694 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLK 58
           L ID ET S            A    ++  AF ++       P  L D      + + L 
Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L       V  N  ++  VL     + +P   +  T+V                A + 
Sbjct: 405 PILRRAQ-RKVGQNLKYDLVVLARH-GVQVPPP-YFDTMVAHYLIAPEEPHNLDVLARQY 461

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +M    ELI     G   + + D        +    G Y   D  +  ++   L   
Sbjct: 462 LRYQMVSITELIG---SGRDQKSMRD-------VSIDEVGPYACEDTDIALQLADVLAAE 511

Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             +          E  L  +   +   G C+D A+   + + ++ E  +L+ ++  +  G
Sbjct: 512 LDRHGLRHIAEEMEFPLIEVLADMERTGICIDRAVLREIGKQLEAELHELEVKIYEVA-G 570

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +  +    ++L   LF + GL     T T    T + VL       P    + + R  A 
Sbjct: 571 VEFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRHLA- 629

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +          P   P   R H   +Q +T
Sbjct: 630 ------------------------------KLKSTYVDGLEPLIHPETGRIHTTFNQTVT 659

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S+P+   I         +R   +   G KL+ AD   IE R+LA ++G++   
Sbjct: 660 ATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T AR F V P QVT +QR   K++   + Y   A    +    +    
Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCS---- 775

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       + + + +++    V+ 
Sbjct: 776 ----------------------------------------TREAQELIEEYQRAFPGVTR 795

Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
               LH+  E+  + G    +  +RR VP +  +           + RS+  R       
Sbjct: 796 ---YLHRVVEEARQKGYVETLLGRRRYVPNINSRNR---------AERSMAERI------ 837

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEI 632
                                  +Q    D++   M+       + GY   ++L VHDE+
Sbjct: 838 ------------------AVNMPIQGTQADMIKLAMVHIYHRLKREGYRAKMLLQVHDEL 879

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E P  +      L           +G+P++ +
Sbjct: 880 VFEMPPEEVEPVRQLVEQEMKQALPLEGVPIEVD 913


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
             P +L        + + LK  LE+ + TI+  N  ++  VL       + I       +
Sbjct: 365 GAPAQL----DKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417

Query: 99  LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           LA      S+        ALK   + M + +++  +  K  +   +              
Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205
              Y   D  VT ++  +L PL  KE             L  +   +  RG  VD A+  
Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQ 527

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261
             +  +      L+Q+   L  G   +    ++L+T L+ E  L +         +T + 
Sbjct: 528 AQSLELGGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL       P    +  +R                                 ++      
Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P Q  P   R H   +Q +T      +++P+   I         +R   IA  G ++
Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K + 
Sbjct: 676 VAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y   +     +    G+  +     +                    +     A   
Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAQEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R +      H+   +      +A       G A       D+  + M K  +
Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                                                   L +N V+A            
Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                  +++ VHDE+V E  + D E     +   M      A  +PL  +
Sbjct: 849 ------HLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 89/605 (14%), Positives = 182/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         +      +    
Sbjct: 358 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPANQEETLKIVNEF 407

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN     V  N  ++  VL+   N  + +   +   ++A     P     +  + E
Sbjct: 408 RPVFENESSLKVGQNIKYDMIVLQ---NYGVEVKGPLFDTMIAHYVLQPELRHGMDYLAE 464

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  VT ++  
Sbjct: 465 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLAPKD-----VYRYACEDADVTLKLKN 512

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  ++++E+ 
Sbjct: 513 VLEKELKENGTERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTEQMERIEKEIY 572

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +   +     T+T    T + VL S +   P   ++  
Sbjct: 573 DLA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 632 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 660

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 661 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 720

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +   +V  D R   K     + Y         +A 
Sbjct: 721 EDKNMIDAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANFGIIYGISVF---GLAE 777

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +       L+        + +     +   +     A E  ++ T   R K+     
Sbjct: 778 RMNVERKEAKELIDG------YFETYPGVKAYMDQSIRVAQEKGYVETIFHR-KRFLPDI 830

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 831 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHDELNFSV 890

Query: 573 VGNNR 577
             + +
Sbjct: 891 PIDEK 895


>gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
           polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 105/536 (19%), Positives = 181/536 (33%), Gaps = 141/536 (26%)

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHT 206
            E       +   +F+ L+     E+ L +L +            +   G  +DVA    
Sbjct: 398 TEDAGERALLAERLFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQA 457

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261
           L+  V+ E  +L++E+  L  G   +    ++L+  LF E GL     TE T +R     
Sbjct: 458 LSLEVEAEVRQLEEEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 516

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL + ++  P   ++                                Q+   ++      
Sbjct: 517 VLEALREAHPIVDRIL-------------------------------QYRELTKLKNTYI 545

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376
              P    P+  R H   +Q  T      +SDP+   I     +   +R   +A EG  L
Sbjct: 546 DPLPALVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWVL 605

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           VV D + IE RVLA ++G++  ++ F+ G D++  T +  F V+P  V    R   K + 
Sbjct: 606 VVLDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLMRRAAKTIN 665

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A       S                     +E+A  F     +++P+     
Sbjct: 666 FGVLYGMSAHRLSGELSI-------------------PYEEAVAFIERYFQSYPK----- 701

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK- 555
                      +AW +                      G     R+R  V  ++ ++   
Sbjct: 702 ----------VRAWIE----------------------GTLEEGRRRGYVETLFGRRRYV 729

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM- 614
            +L   + S R          R   N                    VQ  + D++   M 
Sbjct: 730 PDLNARVKSVREAA------ERMAFNMP------------------VQGTAADLMKLAMV 765

Query: 615 ---MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                  + G  ++L VHDE+V E P D  E  A++   +M     W   +PL+ E
Sbjct: 766 RLFPRLQELGARMLLQVHDELVLEAPKDRAERVAALAKEVMEGV--WPLQVPLEVE 819


>gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
          Length = 916

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 124/713 (17%), Positives = 218/713 (30%), Gaps = 187/713 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 331 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 380

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  L N  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 381 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 437

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 438 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 484

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 485 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 544

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 545 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 603

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 604 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 632

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 633 RVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRI 692

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 693 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 750

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 751 -GLAKSLGIDNLSAKNFID----------------------------------------- 768

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 769 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 810

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------- 617
                 G  R+ +N                     Q  + D++   M++           
Sbjct: 811 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSECEAS 852

Query: 618 ---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                    +++ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 853 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 905


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 114/635 (17%), Positives = 197/635 (31%), Gaps = 142/635 (22%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115
            LK  LE  DV  +A N+ F++ VL       I +     TL+L+               A
Sbjct: 487  LKPMLEAPDVLKIAQNAKFDQLVLAQ---RGIRLAPVDDTLLLSYVLDAGRTDHGMDVLA 543

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             K    +  +   +      G T            R A     EY   D  VT  +++ L
Sbjct: 544  EKYFGHRPIQFGAVAG---SGRTFIG-------FARVALDKATEYSAEDADVTLRLWRVL 593

Query: 176  EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +P  + E+           +      +  RG  +D A+   L+     +  +L+  +  L
Sbjct: 594  KPRLAAERMSAVYETLERPMVETLARMERRGVSIDRAILSRLSGEFAQDMARLEAVIFEL 653

Query: 226  TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280
              G   +    ++L   LF + GL     T T    T   VL    +   P A ++ + R
Sbjct: 654  A-GESFNLGSPKQLGDILFGKMGLAGARKTATGAWSTAAGVLDDLAEQGVPLAARILDWR 712

Query: 281  MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                             S+         P    P   R H    
Sbjct: 713  QL-------------------------------SKLKSTYTDALPSYVNPETGRVHTSYA 741

Query: 341  QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
               T      +S+P+   I         +R   IA  G+KL+ AD + IE R+LA +A  
Sbjct: 742  LAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFIAPPGRKLISADYSQIELRLLAHIADI 801

Query: 396  QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                 AF    D++  T +  F V    +  + R   K +   + Y   A     +A+  
Sbjct: 802  SQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKAINFGIIYGISAF---GLANQL 858

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             +        +K       + +     R   +   + A E+ ++ T              
Sbjct: 859  AIPREEAGAYIK------RYFERFPGIRAYMDATKQFARENGYVTTIFG----------- 901

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                      ++   P +             PS R+       N
Sbjct: 902  --------------------------RKCHYPRITASN---------PSERAF------N 920

Query: 576  NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
             R+ +N   +         G   + I +A+ R    +  +        ++L VHDE+V E
Sbjct: 921  ERAAINAPIQ---------GSAADIIRRAMVR---MDEALEKAGLSAQMLLQVHDELVFE 968

Query: 636  TPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             PD + +    ++  +M   P     L  PL+ + 
Sbjct: 969  APDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDA 1003


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 108/640 (16%), Positives = 195/640 (30%), Gaps = 154/640 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + ++  LE+     +  N  ++  V      + +       T++ +              
Sbjct: 415 ERMRAWLEDASRPKLGQNLKYDIHVFANH-GIKLR-GVAHDTMLQSYVLASHRNHGMDSL 472

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +L S K    +E+    C     +  +D      +       EY   D  VT  + +R
Sbjct: 473 AERLLSLKTITYEEV----CGKGASQIGFD------QIDLARATEYAAEDADVTLRLHRR 522

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P               E  +  + Q +   G  +D       +  +      L+Q   
Sbjct: 523 MFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRMLALEQSAY 582

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
               G   +    +++   LF +  L +   T     +T + VL    +  P    +   
Sbjct: 583 E-AAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL-- 639

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G S+         P    PR  R H   
Sbjct: 640 -----------------------------DYRGLSKLKSTYTDKLPKMVNPRTGRVHTSY 670

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q         +++P+   I         +R   IA  G  +V AD + IE R++A ++G
Sbjct: 671 GQATAVTGRLASTEPNLQNIPVRTDEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISG 730

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L+AF  GED++  T A  F V    V+ +QR   KV+   L Y   A     +AS 
Sbjct: 731 DENLLRAFANGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAF---GLASN 787

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+  +                 A ++       +P        +    E  ++  R   
Sbjct: 788 LGIERDA----------------ARHYIDRYFMRYP-------GVAHYMEETRQTAR--- 821

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDV 573
                      Q + +T+   +                       L LP        R  
Sbjct: 822 ----------EQGYVETVFGRR-----------------------LWLPDINGGSGPRRQ 848

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDI--VLT 627
              R+ +N                     Q  + D++   M+       + G     ++ 
Sbjct: 849 AAERAAINAPM------------------QGTAADLIKLSMIAVQDWLERDGLQTRQIMQ 890

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E P+ + E   + L  LM +       +PL AE
Sbjct: 891 VHDELVLEVPEHELELVKARLPELMCTVAE--LRVPLVAE 928


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 105/654 (16%), Positives = 192/654 (29%), Gaps = 157/654 (24%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D + +  MP      +LK  LE+  V  +  N  ++  +        I I     T++++
Sbjct: 397 DELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY---GIGITPIDDTMLMS 453

Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +G          + +  S      K L+         +  +DR             +
Sbjct: 454 YAMHGGLHGHGMDTLSERYLSHTPIPIKSLLGSG----KSQITFDR------VPVEDAVK 503

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++   +P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 504 YAAEDADITLRLWTIFKPQLHQDRVTRVYEGLERPLVPVLAEMEMAGVQVDRDTLSRMSN 563

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +  +L+ E+  L  G   +    ++L   LF + GL      +T    T   VL  
Sbjct: 564 AFSQKMAQLEAEIHELA-GESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLED 622

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R                                 S+          
Sbjct: 623 LATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQ 651

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
                   R H        +     ++DP+   I         +R   +A EGK +V  D
Sbjct: 652 EHINKETGRVHTSYVIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPEGKTIVSLD 711

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA MAG     +AF  G+D++  T +  FNV   ++T + R   K +   + 
Sbjct: 712 YSQIELRILAHMAGIDALKEAFREGQDIHAMTASEMFNVPMEEMTPEIRRQAKAINFGVI 771

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +A    +        +        +E       +M E             
Sbjct: 772 YGISGF---GLARNLRIPRGEAQAFID-----RYFERFPGIKTYMDETV----------- 812

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                   A+ ++H RV  L+  +                                   +
Sbjct: 813 --------AFAKEHKRVETLFGRI-----------------------------------I 829

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
             P   +   R     R+ +N                    +Q  + DI+   M+    A
Sbjct: 830 HTPEISASGPRAGFAKRAAINAP------------------IQGTAADIIRRAMVRMPGA 871

Query: 621 GYDI----VLTVHDEIVCETPDTDEFNASMLYH-LM--TSNPSWAKGLPLKAEG 667
             +I    +L VHDE++ E     E +       +M   + P     +PL  + 
Sbjct: 872 IAEIPAKMLLQVHDELIFEVEQGAEDDLIAAARSVMEGAAEPVVKLDVPLVVDA 925


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 110/658 (16%), Positives = 205/658 (31%), Gaps = 132/658 (20%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           LF  G D+ P +      +  +  ++   LE+  V  +  N  ++  V+K      I I 
Sbjct: 438 LFG-GDDNRPQQ---LAANEAL-ALIGPLLEDPSVLKIGQNIKYDALVMKR---RGIEIV 489

Query: 92  RWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            +  T++L+ +  G          A +          + +               +K   
Sbjct: 490 SFDDTMLLSYALDGGRGQHGMDALAERHLGHMCMTFAQAMGH------APGAKKSDKTFA 543

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200
                   EY   D  VT  ++  L+P  + E+           L  +   +   G  VD
Sbjct: 544 AMPLDKATEYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVD 603

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
             +   L+        +L++E+  L  G   +    ++L   LF    L     T++   
Sbjct: 604 RDILSRLSHAFAQRTVRLEEEINGL-VGHKFNLGSPKQLGELLFDRLKLPGGKKTKSGQW 662

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR--LRGTLQFLGASRTGR 318
              ++                              E ++ D R  +   L++   ++   
Sbjct: 663 ETRANLLDDL----------------------AANEEIDGDARRLINTMLEWRQMTKLKS 700

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373
                 P        R H       T      +SDP+   I         +R+  IA +G
Sbjct: 701 TYTDALPAYINAETGRIHTSYALGATTTGRLASSDPNLQNIPIRTKEGREIRTAFIADKG 760

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            +L+ AD + IE RVLA +A      KAF  G D++  T +  F V    +  + R   K
Sbjct: 761 MQLISADYSQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAK 820

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y   A     +A+   ++    +  +KT                         
Sbjct: 821 AINFGIIYGISAF---GLANQLSISREEASDYIKTYF----------------------- 854

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK-AIIARKRRDVPLVYMK 552
                                 R   + + +    +Q   +G    I  +R   P +  K
Sbjct: 855 ---------------------QRFPGIRDYMDATKKQVHAHGHVETIFGRRIHYPEINTK 893

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                     PS R          R+ +N   +         G   + I +A+ R  +  
Sbjct: 894 N---------PSMRGF------LERAAINAPIQ---------GSAADIIRRAMIR--MPA 927

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL--PLKAEG 667
            +++A  +   ++L VHDE+V E  D +          +M +    A  L  P+  + 
Sbjct: 928 ALVDAKLSSARMLLQVHDELVFEVADNEASALITTARRVMETAAEPALKLAVPIHVDA 985


>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640]
 gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
          Length = 932

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 119/694 (17%), Positives = 208/694 (29%), Gaps = 170/694 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63
           ID     +   A +   +  +  F           H     P+ L         K  LEN
Sbjct: 357 IDTETTSLD--AMNAAPVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQYVLDRLKPHLEN 414

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAV-GEALKLS 119
             +  +  N  +++ V   C    I ++  +   +LA     + L   L  + G  L L 
Sbjct: 415 PALKKIGQNLKYDQHVFANC---GIALNGIVGDAMLASYIIESHLGHGLDELSGRWLGLE 471

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171
           +   E         C     +            A     EY   D      +        
Sbjct: 472 TITYES-------LCGKGAKQIG------FADVAIGPATEYAAQDADFALRLEAHLRAQM 518

Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             K+LE     E  +  +   +   G  +D A     +  +  E  KL+QE  +   G  
Sbjct: 519 DDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYA-AAGQP 577

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    ++L+  LF + G+  + L +T      T + VL       P    +  NR  A 
Sbjct: 578 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSLA- 636

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P    PR  R H    Q + 
Sbjct: 637 ------------------------------KLKSTYTDKLPEMISPRDKRVHTTYAQAVA 666

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  ++P+   I         VR    A  G  +V AD + IE R++A ++G++  +
Sbjct: 667 ITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G      +A + G++ 
Sbjct: 727 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 783

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            +                                             K    +  +R   
Sbjct: 784 LSA--------------------------------------------KNFIDRYFARYPG 799

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +   + +A E     G       RR         + N                    R+ 
Sbjct: 800 VAEYMQRARECAAGQGYVETLFGRRLYLSDIRHTNANI--------------RARAERAA 845

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
           +N                     Q  + D++   M++ ++          +++ VHDE+V
Sbjct: 846 INAPM------------------QGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELV 887

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P+ + +     L  +M +       +PL AE
Sbjct: 888 LEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAE 921


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
          Length = 949

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 91/605 (15%), Positives = 183/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N    +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  VT ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  ++++E+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +   +     T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   +   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 101/600 (16%), Positives = 191/600 (31%), Gaps = 90/600 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMP--QVLKEA 60
            ID ET S   +             ++  +F  +++           +  +   ++ K  
Sbjct: 351 SIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYIRIFKPL 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
            EN  +  +  N  ++  VL    N  + +   +   ++A     P         A  L 
Sbjct: 401 YENDKILKIGQNIKYDYKVLN---NYGVTLQGEMFDTMIAHYLIQPELHHNMDYMAETLL 457

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +    +ELI    KG+  + + D +  +         EY   D  +T  +   LEP  
Sbjct: 458 GYRTIHIEELIGP--KGKKQKNMRDLSPTD-------ICEYAAEDADITLRLKHLLEPRL 508

Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +          E  L  +   +   G C+D       ++I      + +QE+     G 
Sbjct: 509 KELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEA-GE 567

Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             +    +++   LF +   +     T+T    T + VL S +   P             
Sbjct: 568 TFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVV----------- 616

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                               R  L + G  +         P    PR    H   +Q  T
Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQT 656

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R C I  +G     AD + IE R++A ++G++  +
Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMM 716

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A+ ++    +VT  QR   K     + Y         +A   G+  
Sbjct: 717 EAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTY---GLAQRMGIPN 773

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                L++      ++       +   E   E A    +  T   R ++     +SR + 
Sbjct: 774 GEARELIQ------DYFHTFPKVKAYMEQAKETARAKGYAETLFHR-RRYLPDINSRNAT 826

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRS 578
           +     +        G      K   V +    K++     ++L     L +      R 
Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 199/583 (34%), Gaps = 82/583 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENTDVTIVA 70
           D    GI   A +  ++  +F F+           D    Q L E      EN ++  + 
Sbjct: 381 DTETTGID--ALNAELVGMSFSFEKGKGFYVPFPEDQEEAQTLIEKFRPFFENENIEKIG 438

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            N  ++  +L    N ++ +   +   ++A     P           LS   ++   + I
Sbjct: 439 QNMKYDLKILS---NYNMQVKGKLFDTMIAHYLINP---DMRHNMDVLSETYLKYAPKSI 492

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181
                 +    L  R+ P          EY   D  +T ++ +  +P+  K         
Sbjct: 493 ETLIGKKGKNQLSMRDVPLED-----IKEYATEDADITFQLKEHFQPILEKVGTKKLFDE 547

Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L  +   +   G  +DV     ++  +  E    +Q++   T G   +    ++L 
Sbjct: 548 IEIPLVPVLADMEKEGIRLDVEFLKNMSVDMQKEIDAFEQQIYE-TAGEKFNLASPKQLG 606

Query: 241 TWLFLET--GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             LF +   G   +  T+T    T + VLS           +   R              
Sbjct: 607 DILFDKLKIGGAKQKKTKTGQYATGEEVLSYLANEHQIVRDILEWRQ------------- 653

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                               +         P Q   +  R H +  Q +       +++P
Sbjct: 654 ------------------MVKLQSTYIDALPNQVDKKTGRVHTDYMQTVAATGRLSSTNP 695

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   IA  E   L+ AD + IE R++A + GE+  +KAF+  ED+
Sbjct: 696 NLQNIPIRTEKGRLIRKAFIARDENYTLLSADYSQIELRIIAALCGEENMIKAFQNHEDI 755

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T A+ FN+   +VTK+QR+  K +   + Y   A     +++ T L+    A L++ 
Sbjct: 756 HKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVSAF---GLSNQTNLSRKESAELIEA 812

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               + +   ++F     +   E+   +   G      ++  +  +S  + +     +  
Sbjct: 813 YY--QTYPKLKSFMTSQVDFARENGYVETISGR-----RRYLKDINSANAIVRGGAERNA 865

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
                 G A    K   + +      +N    ++L     LV+
Sbjct: 866 VNAPIQGSAADIIKIAMINIHKKLTSENWKSKMLLQVHDELVF 908


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 120/679 (17%), Positives = 217/679 (31%), Gaps = 165/679 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55
           ID ET + +D       + AE   ++ F+  FD          HD            +  
Sbjct: 350 IDTET-TSLD------YRVAE---MVGFSVAFDAQDAYYVPLTHDYDNAPEQLNREQILA 399

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            LK  LE+  V  + H+  ++  +     N  + +  W    +LA    N + +      
Sbjct: 400 QLKPILEDETVHKIGHHLKYDAHI---FANHSVELKGWYFDTMLASYVINSVATRHGMDD 456

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A    S      +++  +  K +T   +             +   Y   D  VT  +++
Sbjct: 457 VARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYRLYE 506

Query: 174 ----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
               +L+     E  L+ ++         + + G  +D +    L+         L+ + 
Sbjct: 507 VLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLSVEFTETILGLENQA 566

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
             L  G   +    +++   LF + GL     T T      S+++ +  +          
Sbjct: 567 IELA-GESFNVSSPKQVGEILFDKMGLKGGKKTATGQH---STSESILEKVEHPIAE--- 619

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                    L+    S+           Q+     R H    Q 
Sbjct: 620 -----------------------VILEHRTLSKLKNTYTDRLVEQSHNETHRVHTSYHQA 656

Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + ++ 
Sbjct: 657 LTATGRLSSSDPNLQNIPIRGEIGRQIRKAFIAPEGRILLAADYSQIELRLMAHFSQDEA 716

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF+ G+D++  T A   N+   +VT DQR   K +   L Y        +    T  
Sbjct: 717 LLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTR- 775

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                             E+++N+ +     +P                     +   R 
Sbjct: 776 ------------------EESQNYIKQYFHRYP------------------GIYEYMQRT 799

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            ++   L Q F +TI         +R   P +    D  N+++             G  R
Sbjct: 800 RQV--ALEQGFVETI-------LGRRLYTPDI----DARNMMVR-----------KGAER 835

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIV 633
           + +N                     Q  + DI+   M+   K        ++L VHDE+V
Sbjct: 836 AAINAPL------------------QGSAADIIKLAMIEVDKMLPKDQAKLLLQVHDELV 877

Query: 634 CETP-DTDEFNASMLYHLM 651
            E   D  +  A  L   M
Sbjct: 878 FEVDADLADELAPKLAETM 896


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/605 (15%), Positives = 183/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N    +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  VT ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  ++++E+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +   +     T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   +   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKVYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 114/684 (16%), Positives = 212/684 (30%), Gaps = 167/684 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52
              ID ET + +D       + AE   ++ F+  FD          H             
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAQDAYYVPLAHTYENAPQQLNREQ 399

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
           +   +K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDTMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVATHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+P    E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTMEGLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +      +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    ++++N+ +   + +P                     +  
Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT--DEFNASMLYHLMT 652
           E+V E      DE +   + ++M 
Sbjct: 878 ELVFEVDQNIADELS-KQIANVME 900


>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
 gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
          Length = 949

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 99/584 (16%), Positives = 204/584 (34%), Gaps = 84/584 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENTDVTIVA 70
           D    GI   A    ++  +F ++                +VL +      EN ++  + 
Sbjct: 380 DTETTGID--ALHAELVGMSFSYEKGKAFYVPFPESQEEAKVLIDKFVPFFENENIEKIG 437

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  +L    N  + +   +   ++A     P         A        +  + L
Sbjct: 438 QNLKYDLKILS---NYGVTVKGKLFDTMIAHYLINPDMRHNMDILAETYLKYSPKSIETL 494

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181
           I +  K      L  R+ P          EY   D  VT ++ +       K        
Sbjct: 495 IGKKGK----NQLSMRDVP-----LEDIKEYAAEDADVTLQLKEIFTAELEKTETKKLFD 545

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +DV     +++ +DVE   L++++   T G   +    ++L
Sbjct: 546 EIEIPLVSVLADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYE-TAGEKFNLASPKQL 604

Query: 240 KTWLFLET--GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
              LF +   G   +  T+T    T + VL+      P   Q+ + R             
Sbjct: 605 GDILFDKLKIGGAKQKKTKTGQYATGEEVLTYLANDNPIVKQILDWRQ------------ 652

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
                                +         P Q   +  R H +  Q +       +++
Sbjct: 653 -------------------MVKLQSTYILALPEQVDKKTLRVHTDYMQTVAATGRLSSNN 693

Query: 354 PDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +A  E   L+ AD + IE R++A ++GE+  + AF+ GED
Sbjct: 694 PNLQNIPIRTERGRQIRKAFVARDENYTLISADYSQIELRIIAALSGEENMIAAFQNGED 753

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A+ F+VA  +V+++QR+  K +   + Y   A     +++ T L+ +  A L+ 
Sbjct: 754 IHRATAAKVFDVALEEVSREQRSNAKTVNFGIIYGVSAF---GLSNQTSLSRSESAALID 810

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                + +   +++     +   E       +G      ++  +  +S  + + +   + 
Sbjct: 811 AYY--KTYPRLKSYISEQVDFAREKGYVQTILGR-----RRYLKDINSANAVVRSAAERN 863

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
                  G A    K   + +    +++N    ++L     LV+
Sbjct: 864 AVNAPIQGSAADVIKIAMINIHKKLREENWKSKMLLQVHDELVF 907


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 117/697 (16%), Positives = 216/697 (30%), Gaps = 167/697 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
              ID ET + +D       + AE   ++ F+  FD          H+            
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAQDAYYVPLAHNYENAPQQLDREQ 399

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
           +   +K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+P    E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +      +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    ++++N+ +   + +P                     +  
Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKIAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E      E  +  +  +M S       +PL  E
Sbjct: 878 ELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVE 912


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 105/694 (15%), Positives = 215/694 (30%), Gaps = 163/694 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65
           E  S +D    G      ++  + F++  +     PV   D      +    + A E   
Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRTEAQKIVNEFRPAFEKEG 456

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122
              V  N  ++  VL    N    +   +   ++A     P     +  + E       +
Sbjct: 457 ALKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179
               +ELI         +    +N  +         +Y   D  VT ++   LE      
Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   I   G  VD       ++       ++++E+  L  G   +
Sbjct: 563 DAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621

Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +++   LF +   +     T+T    T + VL S +       ++  +R       
Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G  +         P        + H   +Q +T   
Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   I  +G +   AD + IE R++A ++G+   ++AF
Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G+D++  T A+ + ++  +VT++QR+  K     + Y         +A    ++    
Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L+                    E +P+              +K+   +          
Sbjct: 828 KELIDG----------------YFETYPQ--------------IKEYMDKS--------- 848

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                           +AR++  +  ++ +K        LP   S             N+
Sbjct: 849 --------------IDLARRQGYIETIFGRK------RYLPDINS------------RNS 876

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
             R                +Q  + DI+   M+              ++L VHDE+    
Sbjct: 877 VVRGYAERNA-----INAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSV 931

Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
            P+  E    ++   M +  ++   +PL+A+ G+
Sbjct: 932 LPEEKEKVQKIVIEEMEN--AYHMQVPLRADCGW 963


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 111/641 (17%), Positives = 195/641 (30%), Gaps = 142/641 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-A 115
           LK  LE+  V  +A N  ++  VLK    +++       T++L+ +         + E +
Sbjct: 454 LKPMLEDPAVLKIAQNMKYDWLVLKRY-GVEMAPFD--DTMLLSYALDAGMGGNGMDELS 510

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +  +      KE+    C     +  +D+              Y   D  VT  ++K L
Sbjct: 511 QRWLNHTPIPFKEV----CGSGKSQISFDK------VPLDKATAYAAEDADVTLRLWKIL 560

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P  + E+           +      +  RG  +D  +   L+        +L+ E+  +
Sbjct: 561 KPRLAAEEMTVVYERLERPMVATLAKMERRGISIDRQMLSLLSGEFAQGAARLESEIHDV 620

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280
             G + +    ++L   LF + GL     T+T    T   VL            ++   R
Sbjct: 621 A-GEIFNVGSPKQLGEILFGKMGLPGGKKTKTGAWSTSASVLDDLAAQGHELPSKIVEWR 679

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+         P        R H    
Sbjct: 680 QL-------------------------------SKLKSTYTDALPSFINQETGRVHTSFS 708

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              T      +S+P+   I         +R   IA +GKKL+ AD + IE RVLA MA  
Sbjct: 709 LASTSTGRLSSSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISADYSQIELRVLAHMADI 768

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G D++  T +  F V    +    R   K +   + Y   A     +A+  
Sbjct: 769 PQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAF---GLANQL 825

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+                       + +   E  P   I+D    T      K +   + 
Sbjct: 826 GIARGEAGD----------------YIKTYFERFP--GIKDYMEET------KKFVHANG 861

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V  ++                                           GR   Y DV  
Sbjct: 862 YVETIF-------------------------------------------GRRAHYPDVNT 878

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
               +     +        G   + I +A+ R    + ++        ++L VHDE++ E
Sbjct: 879 KNPNMRQFYERAAINAPIQGSAADIIRRAMVR---MDEVLETANLDAQMLLQVHDELIFE 935

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEGYESKRY 673
            P+   +    ++   M      A  L  PLK E   +  +
Sbjct: 936 LPEDQVDETKKLVIATMEKATEPALQLSVPLKVEAEAADNW 976


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/613 (15%), Positives = 191/613 (31%), Gaps = 94/613 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET S   +          D  ++  +F  +++         +      +  + 
Sbjct: 348 KNLSLDTETTSTNAI----------DAELVGLSFAVEENKAFYVAIPAEREKALRIVNIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           K   EN  +  +  N  ++  VL    N DI I   +   ++A     P     +  + E
Sbjct: 398 KPLYENKKILKIGQNIKYDYEVL---LNYDIEIKGKMFDTMIAHYLIQPELHHNMDYLAE 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                + +    +ELI    K + +  + D N  +         EY   D  +T  +   
Sbjct: 455 V--FLNYQTIHIEELIGPKGKNQKN--MRDLNPKD-------VYEYAAEDADITLRLKNV 503

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LEP              E  L  +   +   G C+D       +++      K ++++  
Sbjct: 504 LEPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNALQETSKVFTERMRKYEEKIYE 563

Query: 225 LTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
                  +    +++   LF +   +     T+T    T + VL S +   P    +   
Sbjct: 564 EAA-EKFNISSPKQVGDILFGKMHIMEKPKKTKTGQYVTSEEVLQSIRAKNPIVENIL-- 620

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G  +         P     R    H   
Sbjct: 621 -----------------------------NYRGMKKLLSTYVDNLPTLINKRTGHIHTSF 651

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q +T      +SDP+   I         +R C I   G     AD + IE R++A ++G
Sbjct: 652 NQALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSG 711

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF  G D++  T A+ ++    +VT  QR   K     + Y         +A  
Sbjct: 712 DENMIEAFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQANFGIIYGITTY---GLAQR 768

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             ++ +    L+       ++       +   E   E A ++ +  T   R ++     +
Sbjct: 769 MNISNSEAKDLIT------DYFKTFPKVQAYMEKAKEAARKNGYAETIFGR-RRYLADIN 821

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDV 573
           S    +     +        G      K   + +    + +     ++L     L +   
Sbjct: 822 SHNGTVRGFAERNAINAPIQGSEADIIKVAMIKIWNRFRQEGIKSKMILQVHDELNFSVY 881

Query: 574 GNNRSYLNTTTRQ 586
              +  +     Q
Sbjct: 882 PEEKEKVEQIVIQ 894


>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
 gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
          Length = 930

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 93/525 (17%), Positives = 168/525 (32%), Gaps = 82/525 (15%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPS 107
             +   LK  LE+  +  +  N  +++ V     N  I +       +LA     + L  
Sbjct: 400 ETLLGSLKPYLESKTLLKIGQNLKYDQHV---FANHGIQLQGIAGDAMLASYVLESHLGH 456

Query: 108 ALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            L  + +  L L +   E         C     +            +     EY   D  
Sbjct: 457 GLDELAQRWLGLETITYES-------LCGKGAKQIS------FADVSVEQATEYACQDAD 503

Query: 167 VTREIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
               I   L+              E  +  +   +   G  +D A     +  +  E  K
Sbjct: 504 FALRIEAHLKAQMSDEQRKMYEEMELPVAQVLFHMERNGVLIDRAELAQQSAELGAELLK 563

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTP 271
           L+Q+   L  G   +    ++L+  LF + G+  + L +T      T + VL       P
Sbjct: 564 LEQQAYDLA-GQPFNLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNEAVLEQLAMDYP 622

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +  NR  A                               +         P    P 
Sbjct: 623 LPKIILQNRSLA-------------------------------KLKSTYTDKLPEMINPN 651

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H    Q +       +++P+   I         VR   IA E   +V AD + IE 
Sbjct: 652 THRIHTNYAQAVAITGRLASNNPNLQNIPIRTSEGRRVRRAFIAPENSVIVSADYSQIEL 711

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G+   ++AF+ GED++  T A  F + P  +T +QR   K +   L Y   + 
Sbjct: 712 RIMAHLSGDATLIEAFKNGEDVHRRTAAEVFGMQPENITPEQRRYAKTINFGLIYGMSSY 771

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +A + G++  +    +K   A               +   E A +  ++ T   R 
Sbjct: 772 ---GLAKSLGIDNASADMFIKRYFARYT------GVADYMQRTKEQAADLGYVETLFGR- 821

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
           +      H++ ++      +A       G A    KR  + +   
Sbjct: 822 RLYLPDIHAKNAQARAGAERAAINAPMQGTASDLIKRAMIAVDDF 866


>gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2]
 gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/605 (15%), Positives = 183/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N    +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  VT ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  ++++E+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +   +     T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   +   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
 gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
          Length = 938

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 124/713 (17%), Positives = 218/713 (30%), Gaps = 187/713 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
           T+ ID ET + +D         A +  ++  +  F           H     P+ L    
Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
                K  L N  +  +  N  +++ V     N  I ++      +LA     + L   L
Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459

Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             + E  L L +   E         C     +            A     EY   D    
Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L   +  K+ E++         +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273
           QE  +   G   +    ++L+  LF + G+  + L +T      T + VL       P  
Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  NR  A                               +         P    P+  
Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       +++P+   I         VR    A +G  +V AD + IE R+
Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G    
Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMGQY-- 772

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A + G++  +  + +                                          
Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R   +   + +  EQ    G       RR               L LP  R+ 
Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832

Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------- 617
                 G  R+ +N                     Q  + D++   M++           
Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSECEAS 874

Query: 618 ---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                    +++ VHDE+V E  +T+ +F    L  +M         +PL AE
Sbjct: 875 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 927


>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
 gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/558 (17%), Positives = 187/558 (33%), Gaps = 84/558 (15%)

Query: 5   FIDFETRSPIDLTK--CGICKYAEDVCVILFAFGF-------DDHPVELWDCVHDPVMPQ 55
            ID ET S   +     G+       C+ L    +          P +L    +   + Q
Sbjct: 338 SIDTETTSLNPMEAKLVGL-----SFCMELGQAAYIPLAHHYPGVPSQL----NREQVLQ 388

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            LK  LE+ +   +  N  ++R V      +   I     TL+ +       +      A
Sbjct: 389 RLKPWLESDEKLKIGQNLKYDRHVFANHGVMLNGI--VHDTLLQSYVLESHLSHDLDSLA 446

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +     E+  +  K               +      G Y   D  +   + + L
Sbjct: 447 SRHLGIQTISYDEVTGKGAK----------RIGFEQVEIHRAGIYAAEDADIPLRLHRVL 496

Query: 176 EPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P+ S++  L Y+ Q            I   G  +D  L    +  +  +   L+Q+  S
Sbjct: 497 YPVISQDAHLEYIYQQIEIPLLEVLFRIERNGVLLDTDLLRVQSGELTQQLVALEQQAHS 556

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           L  G   +    ++++  LF +  L +   T               P   +    R+   
Sbjct: 557 LA-GHAFNLNSTKQIQEILFGQHKLPVIKKTPKGV-----------PSTDEEVLQRL--- 601

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
            ++   L  ++            L + G ++         P     +  R H    Q + 
Sbjct: 602 -ASDYPLPKVL------------LDYRGLAKLKSTYIDKLPQMVNKQTGRVHTHYAQAVA 648

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   IA +G  ++ AD + IE R++A ++G+   +
Sbjct: 649 VTGRLASNDPNLQNIPVRTPEGRRIREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLI 708

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F V   QV  +QR   KV+   L Y         +A+  G+  
Sbjct: 709 HAFSEGQDIHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMSEF---GLATQLGIER 765

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 +    A   +    ++ +  +E   +H   +  +G    R++ +  + + R  +
Sbjct: 766 TAARTFIDRYFAR--YPGVADYMQRTRELAKQHGYVETVLGR---RLQLSDIRSNQRNRQ 820

Query: 520 LWNELHQAFEQTIENGKA 537
           +     +A       G A
Sbjct: 821 M--GAERAAINAPMQGTA 836


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/599 (15%), Positives = 193/599 (32%), Gaps = 85/599 (14%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65
           E  S +D    G      ++  + F++  +     PV   D      +    + A E   
Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRAEAQKIVNEFRPAFEKEG 456

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122
           V  V  N  ++  VL    N    +   +   ++A     P     +  + E       +
Sbjct: 457 VLKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179
               +ELI         +    +N  +         +Y   D  VT ++   LE      
Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   +   G  VD       ++       ++++E+  L  G   +
Sbjct: 563 DAEKLFYEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621

Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +++   LF +   +     T+T    T + VL S +       ++  +R       
Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G  +         P        + H   +Q +T   
Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   I  +G +   AD + IE R++A ++G+   ++AF
Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G+D++  T A+ + ++  +VT++QR+  K     + Y         +A    ++    
Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L+        + +     +   +   + A    +I T   R K+     +SR S +  
Sbjct: 828 KELIDG------YFETYPQIKEYMDKSIDLARGQGYIETIFGR-KRYLPDINSRNSVVRG 880

Query: 523 ELHQAFEQT-IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +      I+ G A I +          + +     ++L     L +  +   +  +
Sbjct: 881 YAERNAINAPIQGGAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEKV 939


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 101/600 (16%), Positives = 192/600 (32%), Gaps = 90/600 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMP--QVLKEA 60
            ID ET S   +             ++  +F  +++           +  +   ++ K  
Sbjct: 351 SIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYVRIFKPL 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
            EN ++  +  N  ++  VL    N  + +   +   ++A     P         A  L 
Sbjct: 401 YENDNILKIGQNIKYDYEVLN---NYGVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLL 457

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +    +ELI    KG+  + + D +  +         EY   D  +T  +   LEP  
Sbjct: 458 GYRTIHIEELIGP--KGKKQKNMRDLSPTD-------ICEYAAEDADITLRLKHLLEPRL 508

Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +          E  L  +   +   G C+D       ++I      + +QE+     G 
Sbjct: 509 KELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEA-GE 567

Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             +    +++   LF +   +     T+T    T + VL S +   P             
Sbjct: 568 TFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVV----------- 616

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                               R  L + G  +         P    PR    H   +Q  T
Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQT 656

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R C I  +G     AD + IE R++A ++G++  +
Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMM 716

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A+ ++    +VT  QR   K     + Y         +A   G+  
Sbjct: 717 EAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTY---GLAQRMGIPN 773

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                L++      ++       +   E   E A    +  T   R ++     +SR + 
Sbjct: 774 GEARELIQ------DYFHTFPKVKAYMEQAKETARAKGYAETLFHR-RRYLPDINSRNAT 826

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRS 578
           +     +        G      K   V +    K++     ++L     L +      R 
Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
             P +L        + + LK  LE+ + TI+  N  ++  VL       + I       +
Sbjct: 365 GAPAQL----DKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417

Query: 99  LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           LA      S+        ALK   + M + +++  +  K  +   +              
Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205
              Y   D  VT ++  +L PL  KE             L  +   +  RG  VD A+  
Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQ 527

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261
             +  +      L+Q+   L  G   +    ++L+T L+ E  L +         +T + 
Sbjct: 528 AQSIELGGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL       P    +  +R                                 ++      
Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P Q  P   R H   +Q +T      +++P+   I         +R   IA  G ++
Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K + 
Sbjct: 676 VAADYSQVELRIIAHVSKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y   +     +    G+  +     +                    +     A   
Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAQEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R +      H+   +      +A       G A       D+  + M K  +
Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                                                   L +N V+A            
Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                  +++ VHDE+V E  + D E     +   M      A  +PL  +
Sbjct: 849 ------HLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891


>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
 gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
          Length = 911

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/607 (17%), Positives = 188/607 (30%), Gaps = 90/607 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----QVLKEALENT 64
           D     +   A    ++  +F F+          H     DP +P     + LK  LE+ 
Sbjct: 338 DTETTSLD--AMRAEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRAETLERLKPWLESE 395

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQK 122
               + H+  ++R VL    N  I +   +   +L        A        A +    K
Sbjct: 396 RHGKLGHHLKYDRNVLG---NHGITLRGIVDDTLLESFCLDAGANRHDLDSLAERHLDYK 452

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179
               +++  +  K            P       +  +Y   D  +  ++    +P     
Sbjct: 453 TTHYEDVAGKGVKQ----------IPFAEVDIGIATDYAGEDADICLQLDAVFQPRLQAA 502

Query: 180 --------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   I   G  VD       +Q +  E  ++++E      G   
Sbjct: 503 EGPAFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEMERIEREAFEEAGG-EF 561

Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++++  LF   GL +         +T + VL            +  +R       
Sbjct: 562 NLGSPKQIQEILFERLGLPVLRRTPKGQPSTAEDVLEQMADDYALPRLILEHR------- 614

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G S+         P +  P   R H    Q      
Sbjct: 615 ------------------------GLSKLRSTYTETLPRRIHPETGRVHTSYHQAGAATG 650

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   IA EG +L+ AD + IE R++A ++ +   LKAF
Sbjct: 651 RLSSSEPNLQNIPVRTEAGRRIRRAFIAEEGHQLLAADYSQIELRIMAHLSQDAGLLKAF 710

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T A  F + P QV+ DQR   K +   L Y   A     +A   G+     
Sbjct: 711 AEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAINFGLIYGMSA---WGLARNLGIEQGEA 767

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +    +               E       E+ ++ T   R +    + +SR      
Sbjct: 768 REYIDRYFSRYP------GVHDYMERARASGRENGYVETLFGR-RLYLPEINSRNGARRQ 820

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLN 581
           +  +        G A    KR  V + +  +D      +++     LV+         L 
Sbjct: 821 QSERVAINAPMQGTAADIIKRAMVRVAHDLEDTGIDARMIMQVHDELVFEVADAAVEDLT 880

Query: 582 TTTRQLT 588
           T  R+  
Sbjct: 881 TLVRKAM 887


>gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179]
 gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
          Length = 925

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/623 (16%), Positives = 190/623 (30%), Gaps = 148/623 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+ ++  V  N  ++ T+L         +     T++ + +            A 
Sbjct: 404 LKTVLEDPNIKKVGQNLKYDLTILARHGVELQGV--VYDTMLESYTLDSTGRHNMDDLAK 461

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +         ++L  +     T + +                EY   D  VT ++ + L 
Sbjct: 462 RFLHHDTIHFEDLAGKGKGQLTFDQI----------EIDKAAEYAAEDADVTFKLHQVLW 511

Query: 177 PL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P            +  E  L  +   +   G  +D  L +  +Q ++    +L+Q+   L
Sbjct: 512 PQLNQTPSLVKLFTEVELPLSQVLARMERNGVLIDSDLLYQQSQEINARLIQLEQQAHQL 571

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF + GL +   T      T + VL            +  +R 
Sbjct: 572 A-GQAFNLASTKQLQEILFGKLGLPVLKKTPKGAPSTNEEVLEELAYEHELPKLLVEHR- 629

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 630 ------------------------------GFSKLKSTYTDKLPQMIDPNTGRVHTSYHQ 659

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G K+V AD + IE R++A ++ + 
Sbjct: 660 AVTITGRLSSSDPNLQNIPTRSEEGRKIRQAFIAPQGFKVVAADYSQIELRIMAHLSADA 719

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               AF  G D++ +T A  F+V   QVT  QR   K +   L Y   A     +A    
Sbjct: 720 GLAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAINFGLIYGMSAF---GLARQLQ 776

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  N     +                                               +  
Sbjct: 777 IPRNEAQTYIDRYFHR-----------------------------------------YPG 795

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +  N++ +  +Q     + ++ R+                 L LP  +S         
Sbjct: 796 VKQFMNDIQEKAKQQ-GYVETLLGRR-----------------LYLPELKSS-------- 829

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDE 631
               N   R+               +Q  + DI+ + M++       K    +++ VHDE
Sbjct: 830 ----NGMRRKAAERVA-----INAPMQGTAADIIKKAMIDIDRFIADKNDIRMIMQVHDE 880

Query: 632 IVCETPDTDEFNASMLYHLMTSN 654
           +V E  +        +   M  N
Sbjct: 881 LVFEVKEDKVEYYEKIIKDMMEN 903


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 117/699 (16%), Positives = 215/699 (30%), Gaps = 175/699 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----Q 55
           +D ET S  +L             ++  +F  +          H        +P     +
Sbjct: 355 LDTETNSLDELR----------AQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLDTVLE 404

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            LK  LE+     +  +  ++R V     N  I +  +   T++ +    +         
Sbjct: 405 RLKPWLEDASRPKLGQHVKYDRHV---FANHGIDVRGYAHDTMLQSYVLEVHRPHNLASL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A + + +     ++L  +  K            P  +        Y   D   T ++ + 
Sbjct: 462 AERHTGRTGISYEDLCGKGAKQ----------IPFAQVPVEQAAAYSCEDSDQTLDVHRV 511

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L PL             E E   +   I   G  +D A     +  +     +L+QE   
Sbjct: 512 LWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDTATLQQQSHDLGQRILRLEQEAYD 571

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +  G   +    ++L    F + GL +   T T    T + VL    +  P   ++  +R
Sbjct: 572 IA-GQPFNLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPAKILEHR 630

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             +             A                                PR  R H    
Sbjct: 631 SLSKLKGTYTDKLGQLA-------------------------------DPRTGRVHTHYA 659

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +++P+   I         VR   +A  G+ +  AD + IE R++A ++G+
Sbjct: 660 QAVAVTGRLSSNEPNLQNIPIRTAEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF  G D++  T A  F VA  QV+ +QR   KV+   L Y   +     +A   
Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSF---GLARNL 776

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A  +        ++      ++M E                            
Sbjct: 777 GIDNKAAAAYID-----RYFQRYPGVKQYMDET--------------------------- 804

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A  +     + +  R+                 L LP   S      G 
Sbjct: 805 ----------KASAKARGYVETVFGRR-----------------LYLPEINSPNGPRRGA 837

Query: 576 -NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTV 628
             R+ +N                     Q  + D++ + M      ++A K    +++ V
Sbjct: 838 AERAAINAPM------------------QGTAADLIKKAMVAVQAVLDADKPQVLMIMQV 879

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P+ +     + +  LM         +PL AE
Sbjct: 880 HDELVFELPEEESGWLRTEVPRLMAGVAE--LKVPLLAE 916


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 114/694 (16%), Positives = 210/694 (30%), Gaps = 173/694 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63
           +D     + +      ++  +F             HD       +P+      LK  LEN
Sbjct: 372 VDTETTSLDEML--AQIVGISFSVTPGEAAYIPLTHDYPDAPAQLPRDEVLARLKPWLEN 429

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAVGEALKLSS 120
             +  +  +  ++R V     N  I +  +   T++ +       P  L ++ E      
Sbjct: 430 PAIAKLGQHVKYDRHV---FANHGIEVQGYAHDTMLQSYVLEVHKPHGLASLAERHV--- 483

Query: 121 QKMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                G+  I     C    H+  ++      +       EY   D   T ++ + L P 
Sbjct: 484 -----GRSGINYEDLCGKGVHQIKFN------QVDIAKAAEYSCEDSDQTLDVHRVLWPQ 532

Query: 179 SSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                +L   + L+         I   G  +D       +  +     +L+ E   L  G
Sbjct: 533 IEANDKLRFVYELEMKSSETLYRIERNGVLIDAPTLAKQSGELGARIVQLEAEAHELA-G 591

Query: 229 LVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F + GL +         +T + VL    +  P   ++  +R    
Sbjct: 592 QPFNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHR---- 647

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                      G S+              PR  R H    Q + 
Sbjct: 648 ---------------------------GLSKLKGTYTDKLAQLAHPRTGRVHTHYAQAVA 680

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         VR   +A  G  +  AD + IE R++A ++ ++  L
Sbjct: 681 VTGRLSSNDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHLSEDEALL 740

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A  F VA  QV+ +QR   KV+   L Y   +     +A   G+  
Sbjct: 741 RAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSF---GLARNLGIET 797

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +                +   +     A    ++ T   R     R     ++ 
Sbjct: 798 KAAAAYIDRYFQRYP------GVKHYMDETRLSAKSKGYVETVFGR-----RLYLPEINS 846

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                                      P+G     R  G  R+ 
Sbjct: 847 -------------------------------------------PNG----PRRGGAERAA 859

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIV 633
           +N                     Q  + D++   M      ++A K    +++ VHDE+V
Sbjct: 860 INAPM------------------QGTAADLIKLSMVKVQEVLDAEKRATKMIMQVHDELV 901

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P+ + E+    +  +M         +PL AE
Sbjct: 902 FEVPEAEVEWVRVEIPRIMAGVAD--LRVPLLAE 933


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 109/649 (16%), Positives = 209/649 (32%), Gaps = 143/649 (22%)

Query: 46  DCVHDPVMPQV---------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           D      +            LK  LEN  V  +  N  ++  V++     DI I  +  T
Sbjct: 422 DLFGGERIVGQIETQRALALLKPILENQAVLKIGQNMKYDWLVMRQY---DITIRSFDDT 478

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWR 155
           ++L+        L A      +        G   IA   K  T +    +     +   +
Sbjct: 479 MLLS------YVLDAGISTHGMDVLSERWLGHTPIAY--KNLTCDGK--KIVSFAQVDLK 528

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAH 205
               Y   D  +T  +++ L+P    +          + L  +   + +RG  VD  +  
Sbjct: 529 QATLYAAEDADITLRLWQVLKPQLVAQGMTKIYERLDRPLIEVLARMEERGILVDRQILS 588

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
            L+  +      L++E+  L  G   +    ++L   LF + GL     T+       + 
Sbjct: 589 CLSGELAQAALSLEEEIYQLA-GEQFNIASPKQLGDILFSKIGLPGGAKTKGGQWSTSAQ 647

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             +       +                            R  + +   ++         P
Sbjct: 648 ILEELAAEGHMLP--------------------------RKIVDWRQIAKLKSTYTDALP 681

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
               P+  R H       T      +S+P+   I         +R+  IASEG  L+ AD
Sbjct: 682 SYISPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLSAD 741

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +A      +AF  G+D++  T ++ F VA  +++ D R   K +   + 
Sbjct: 742 YSQIELRLLAHIADITALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFGII 801

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y   A     +A+  G++    +H +                                  
Sbjct: 802 YGISAF---GLANQLGISREEASHYI---------------------------------- 824

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLI 559
                     R    R   + + +        ++G    I  +R   P +  +  +    
Sbjct: 825 ----------RVYFERFPGIQSYMEATKIFARQHGYVETIFGRRIHYPEIKARDRQ---- 870

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                          N R+ +N   +         G   + I +A+   I  EG +    
Sbjct: 871 -----------VRAFNERAAINAPIQ---------GSAADIIRRAM---IQMEGALEKEG 907

Query: 620 AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWAKGLPLKA 665
               ++L VHDE++ E P  + E   +++  +M   + P+ +  +PL+ 
Sbjct: 908 LSAKMLLQVHDELIFEIPKAESEKTKAIVKKVMENATMPALSLSVPLEV 956


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/608 (16%), Positives = 187/608 (30%), Gaps = 93/608 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET S   +          D  ++  +F   +          +      +  + 
Sbjct: 349 KILSLDTETTSTSAI----------DAELVGLSFAVKEFEAFYVPVPANREEALQIVNIF 398

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K A EN ++  V  N  ++  VL+   N  I +   +   ++A     P     +    +
Sbjct: 399 KPAYENPEILKVGQNLKYDLEVLR---NYGIELKGKMWDTMIAHYLIQPELHHNMDYMAE 455

Query: 118 LS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +  + +    +ELI      +       R+ P          EY   D  +T  +  +LE
Sbjct: 456 IYLNYQTIHIEELIG----PKGKNQKSMRSLPP-----SQVYEYAAEDADITLRLKNKLE 506

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P   K          E  L  +   +   G C+D A     ++       +++  +  L 
Sbjct: 507 PELKKAECEDLFYNIEMPLMPVLAEMELNGVCLDTASLAETSKQFTNRMNEIEARIYELA 566

Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            G   +    +++   LF +   +     T+T    T + VL   +        +  +R 
Sbjct: 567 -GEQFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLQQLRNKHEIVADILEHR- 624

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G  +         P    P+    H   +Q
Sbjct: 625 ------------------------------GLKKLIGTYIDALPKLINPKTGHIHTSFNQ 654

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            IT      +SDP+   I         +R   I   G     AD + IE RV+A ++ + 
Sbjct: 655 TITATGRLSSSDPNLQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDA 714

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +K F  G+DL+  T A  +     +VT+D+R   K     + Y         +A    
Sbjct: 715 EMIKVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIYGITVF---GLAERLD 771

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +    L+        + D         E   E A E  ++ T   R ++     +S 
Sbjct: 772 IPRDEAKMLIDG------YFDTFPQVHDYMEKSKEVAREKGYVTTLFGR-RRYLPDINSH 824

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLV---YRD 572
            + +     +        G A    K   + +    K +     ++L     L    Y D
Sbjct: 825 NATVRGFAERNAINAPIQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDELNFSVYPD 884

Query: 573 VGNNRSYL 580
                  +
Sbjct: 885 EKEKVEGI 892


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 104/546 (19%), Positives = 179/546 (32%), Gaps = 140/546 (25%)

Query: 149 NHREAWRL-----FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTIND 194
            H E         F E       ++  +F+ L P             E+ L  +   +  
Sbjct: 387 THPEGVARRYGGEFTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
           RG  +DV L   L+  ++ E  +L+ E+  L  G   +    ++L+  LF E GL     
Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGLTPVGR 505

Query: 255 TETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
           TE T +R      L + +   P    +                                Q
Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELIL-------------------------------Q 534

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCV 364
           +   S+         P    PR  R H   +Q  T      +SDP+   I     +   +
Sbjct: 535 YRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRI 594

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A EG  L+ AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V
Sbjct: 595 RKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALV 654

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
            +  R   K +   + Y   A    +++   G++                +++AE F   
Sbjct: 655 DQKMRRAAKTVNFGVLYGMSA---HRLSQELGID----------------YKEAEAFIER 695

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
             ++ P+                +AW ++          +              +  +RR
Sbjct: 696 YFQSFPK---------------VRAWIERTLEEGRTRGYVE------------TLFGRRR 728

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            VP +  +                        R   N                    VQ 
Sbjct: 729 YVPDLASRVRS---------------VREAAERMAFNMP------------------VQG 755

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
            + D++   M          G  ++L VHDE+V E P+     A  L   +  N ++   
Sbjct: 756 TAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLD 814

Query: 661 LPLKAE 666
           +PL+ E
Sbjct: 815 VPLEVE 820


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/694 (15%), Positives = 215/694 (30%), Gaps = 163/694 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65
           E  S +D    G      ++  + F++  +     PV   D      +    + A E   
Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRTEAQKIVNEFRPAFEKEG 456

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122
              V  N  ++  VL    N    +   +   ++A     P     +  + E       +
Sbjct: 457 ALKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179
               +ELI         +    +N  +         +Y   D  VT ++   LE      
Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   I   G  VD       ++       ++++E+  L  G   +
Sbjct: 563 DAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621

Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +++   LF +   +     T+T    T + VL S +       ++  +R       
Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G  +         P        + H   +Q +T   
Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   I  +G +   AD + IE R++A ++G+   ++AF
Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G+D++  T A+ + ++  +VT++QR+  K     + Y         +A    ++    
Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L+                    E +P+              +K+   +          
Sbjct: 828 KELIDG----------------YFETYPQ--------------IKEYMDKS--------- 848

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                           +AR++  +  ++ +K        LP   S             N+
Sbjct: 849 --------------IDLARRQGYIETIFGRK------RYLPDINS------------RNS 876

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
             R                +Q  + DI+   M+              ++L VHDE+    
Sbjct: 877 VVRGYAERNA-----INAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSV 931

Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
            P+  E    ++   M +  ++   +PL+A+ G+
Sbjct: 932 LPEEKEKVQKIVIEEMEN--AYHMQVPLRADCGW 963


>gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY]
 gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
          Length = 922

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 118/701 (16%), Positives = 227/701 (32%), Gaps = 179/701 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----Q 55
           +D ET S  +L             ++  +F  +          H+     P +P     +
Sbjct: 350 LDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVLE 399

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            L+  LE+     +  +  ++R V     N  I +  +   T++ +    +         
Sbjct: 400 RLRPWLEDPACPKLGQHVKYDRHV---FANHGIQVRGYAHDTMLQSYVLEVHKPHGLTSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A + + +     ++L  +  K            P  +        Y   D   T ++ + 
Sbjct: 457 AERHTGRTGISYEDLCGKGAKQ----------IPFAQVPVDKAAAYSCEDSDQTLDVHRV 506

Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L P    + +L   + L+         I   G  +D       +  +     +L+QE  +
Sbjct: 507 LWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQEAYA 566

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +  G   +    ++L    F + G+ +   T T    T + VL    +  P   ++  +R
Sbjct: 567 IA-GQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 625

Query: 281 M--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +   +   KL+TL +                                 PR  R H  
Sbjct: 626 SLCKLKGTYTDKLSTLAD---------------------------------PRTGRVHTH 652

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       +++P+   I         VR   +A  G+ +  AD + IE R++A ++
Sbjct: 653 YAQAVAVTGRLSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHIS 712

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L AF  G D++  T A  F VA  QV+ +QR   KV+   L Y   +     +A 
Sbjct: 713 GDEALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSF---GLAK 769

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+     A  +        ++      ++M+E                          
Sbjct: 770 NLGIETKAAAAYID-----RYFQRYPGVKQYMEET------------------------- 799

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                       +A  +     + +  R+                 L LP   S      
Sbjct: 800 ------------KAQAKARGYVETVFGRR-----------------LYLPEINSPNGPRR 830

Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVL 626
           G   R+ +N                     Q  + D++ + M      ++A K    +++
Sbjct: 831 GAAERAAINAPM------------------QGTAADLIKKAMVAVQGELDARKPEVLMIM 872

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            VHDE+V E P+ + ++    +  LM      A  +PL AE
Sbjct: 873 QVHDELVFELPEGEVDWLRREIPRLMAGVA--ALQVPLLAE 911


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/599 (15%), Positives = 192/599 (32%), Gaps = 85/599 (14%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65
           E  S +D    G      ++  + F++  +     PV   D      +    + A E   
Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRAEAQKIVNEFRPAFEKEG 456

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122
           V  V  N  ++  VL    N    +   +   ++A     P     +  + E       +
Sbjct: 457 VLKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179
               +ELI         +    +N  +         +Y   D  VT ++   LE      
Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   +   G  VD       ++       ++++E+  L  G   +
Sbjct: 563 DAEKLFYEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621

Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +++   LF +   +     T+T    T + VL S +       ++  +R       
Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G  +         P        + H   +Q +T   
Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   I  +G +   AD + IE R++A ++G+   ++AF
Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAF 770

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G+D++  T A+ + ++  +VT++QR+  K     + Y         +A    ++    
Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L+        + +     +   +   + A    +I T   R K+     +SR S +  
Sbjct: 828 KELIDG------YFETYPQIKEYMDKSIDLARGQGYIETIFGR-KRYLPDINSRNSVVRG 880

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +        G A    K   V +    + +     ++L     L +  +   +  +
Sbjct: 881 YAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEKV 939


>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
 gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
          Length = 949

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/605 (14%), Positives = 182/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPADQEEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N  + +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGVQVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L+  +  ++E           +       R+             Y   D  VT ++  
Sbjct: 484 IYLRYQTIHIDE-------LIGPKGKNQKNMRDLAPKD-----VYRYACEDADVTLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +   +++E+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMENIEKEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +   +     T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +       L+        + +     +   +   + A E  ++ T   R K+     
Sbjct: 797 RMNVERKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
               +
Sbjct: 910 PVEEK 914


>gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/604 (15%), Positives = 182/604 (30%), Gaps = 86/604 (14%)

Query: 14  IDLTKCGI-CKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALE 62
           +D     +  + A    ++  +F             HD            +  +LK  LE
Sbjct: 353 VDTETTSLDYRLA---RIVGVSFALQAGEAFYIPIGHDYMGAPEQLDAQFVLDILKPILE 409

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSS 120
           N  +  +  +  ++  V     N  I +  W    +LA     P+A        A    +
Sbjct: 410 NPAIGKIGQHMKYDAHVFN---NHGISLAGWAFDTMLASYVLNPTATRHGMDDLAQYYLN 466

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
                 +++  +  K  T   +                 Y   D  +T  +++       
Sbjct: 467 YTTTTFEQIAGKGAKQLTFNQI----------ELEKAAPYAAEDADITWRLYEHFSKELA 516

Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                   L   E     +   + + G  +D+     L Q    +   L+     L  G 
Sbjct: 517 KIPRLERLLLDAEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELA-GQ 575

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +    ++L   LF + G+      + T     ++ + +  +                 
Sbjct: 576 PFNVSSPKQLGEILFDKLGIA---GGKKTASGQYATGEAILEKIDHPI------------ 620

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                         +   L++   S+           Q+ P   R H    Q I      
Sbjct: 621 --------------IATILEYRSLSKLKSTYTDSLIAQSDPATQRVHTSYHQAIAATGRL 666

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IA +G+ ++ AD + IE R++A  + ++  LKAF  
Sbjct: 667 SSTDPNLQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRD 726

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T A    +A   VT DQR   K +   L Y   A     +A    L+      
Sbjct: 727 GRDIHQATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAF---GLAKQLNLSRAEAQE 783

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +    +               EN    A E  ++ T   R +       +  + +    
Sbjct: 784 YITLYFSRYP------SVHDYMENTRALAAEQGYVETVLGR-RLYMENIRAGNAMVRQAA 836

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A       G A    K   +  V     K +  ++L     LV+    +    +    
Sbjct: 837 ERAAINAPLQGSAADIIKLAMIS-VDQSLPKEHAKMLLQVHDELVFEVDEDKADEVTALL 895

Query: 585 RQLT 588
           ++L 
Sbjct: 896 KKLM 899



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYD 623
           L  R    N    N   RQ          L     Q  + DI+   M++      K    
Sbjct: 816 LGRRLYMENIRAGNAMVRQAAERAAINAPL-----QGSAADIIKLAMISVDQSLPKEHAK 870

Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLM 651
           ++L VHDE+V E  +       ++L  LM
Sbjct: 871 MLLQVHDELVFEVDEDKADEVTALLKKLM 899


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 119/699 (17%), Positives = 216/699 (30%), Gaps = 175/699 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----Q 55
           +D ET S  +L             ++  +F  +          H        +P     +
Sbjct: 355 LDTETTSLDELR----------AEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAVLE 404

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            LK  LE+     +  +  ++R V     N DI +  +   T++ +    +         
Sbjct: 405 RLKPWLEDGSRAKLGQHVKYDRHV---FANHDIGVRGYVHDTMLQSYVLEVHKPHNLASL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A + + +     ++L  +  K            P  +        Y   D   T ++ + 
Sbjct: 462 AERHTGRTGISYEDLCGKGAKQ----------IPFAQVPVEQAAAYSCEDSDQTLDVHRV 511

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L PL             E E   +   I   G  +D A     +  +     KL+QE   
Sbjct: 512 LWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDPATLQQQSHDLGQRILKLEQEAYD 571

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +  G   +    ++L    F + GL +   T T    T + VL    +  P   ++  +R
Sbjct: 572 IA-GQPFNLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPAKILEHR 630

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+              PR  R H    
Sbjct: 631 SL-------------------------------SKLKGTYTDKLSQLADPRTGRVHTHYA 659

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +++P+   I         VR   +A  G+ +  AD + IE R++A ++G+
Sbjct: 660 QAVAVTGRLSSNEPNLQNIPIRTSEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF  G D++  T A  F VA  QV+ +QR   KV+   L Y   +     +A   
Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSF---GLARNL 776

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A  +        ++      ++M E                            
Sbjct: 777 GIDNKAAAAYID-----RYFQRYPGVKQYMDET--------------------------- 804

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A  +     + +  R+                 L LP   S      G 
Sbjct: 805 ----------KASAKARGYVETVFGRR-----------------LYLPEINSPNGPRRGA 837

Query: 576 -NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTV 628
             R+ +N                     Q  + D++ + M      ++A K    +++ V
Sbjct: 838 AERAAINAPM------------------QGTAADLIKKAMVAVQAVLDADKPQVLMIMQV 879

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P+ +     + +  LM         +PL AE
Sbjct: 880 HDELVFELPEEEAGWLRTEIPRLMAGVAE--LKVPLLAE 916


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 113/633 (17%), Positives = 215/633 (33%), Gaps = 142/633 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  +  N  ++  V+K      I IH +  T++L+       AL+A     
Sbjct: 442 LKPILEDQAVLKIGQNIKYDWLVMKQY---GIVIHCFDDTMLLS------YALEAGTLTH 492

Query: 117 KLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +++      G + IA   K  TH     +         +    Y   D  +T  +++ L
Sbjct: 493 NMNALSERWLGHKPIAY--KDLTHNGK--KITSFAEVDLKQATLYAAEDADITLRLWQVL 548

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P    +          + L  +   + +RG  VD  +   L+  +      L++E+  L
Sbjct: 549 KPQLVAQGMTRIYERLDRPLIEVLARMEERGILVDRQILLRLSGELAQAAFILEEEIYQL 608

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFNNR 280
           + G   +    ++L   LF + GL     T+    +T  + L            ++ + R
Sbjct: 609 S-GEKFNLASPKQLGDILFGKMGLPGGAKTKGGQWSTSAQTLEELAAEGHILPRKIIDWR 667

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A                               +         P   LP+  R H    
Sbjct: 668 QLA-------------------------------KLKSTYTDALPSYILPKTGRVHTNYS 696

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             IT      +S+P+   I         +R+  +A +   L+ AD + IE R+LA +A  
Sbjct: 697 LAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFVAPKRHVLLSADYSQIELRILAHIANI 756

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G+D++  T ++ F VA   +  D R   K +   + Y   A     +A+  
Sbjct: 757 TALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINFGIIYGISAF---GLANQL 813

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL+                 ++A  + +   E  P   I+D    T      K + +++ 
Sbjct: 814 GLSR----------------QEAGRYIQLYFERFP--GIKDYIETT------KTFARQNG 849

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V  ++                                           GR + Y ++  
Sbjct: 850 YVETIF-------------------------------------------GRRIHYPEIKA 866

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
               + +   +        G   + I +A+   I  E  +   K    ++L VHDE+V E
Sbjct: 867 ASPQVRSFNERAAINAPIQGSAADIIRRAM---IQMEDALEKEKLSAKMLLQVHDELVFE 923

Query: 636 TPDTDE-FNASMLYHLM--TSNPSWAKGLPLKA 665
            P+ +     +++  +M   + P  +  +PL+ 
Sbjct: 924 VPEEESKKTMAVVKKVMENATMPVLSLSVPLEV 956


>gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 921

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/588 (17%), Positives = 183/588 (31%), Gaps = 83/588 (14%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTD 65
           +   G    A+   ++  +F    H        H             + + LK  LE+ D
Sbjct: 340 IQSNGTD--AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPD 397

Query: 66  VTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKL 118
            T V  ++ F   +L  C         I +       +L     +   +         K 
Sbjct: 398 KTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKY 457

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177
            +      +E+  +  K  T + +          A    G+Y   +  +T  + +  E  
Sbjct: 458 LTHTPINFQEIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEAR 507

Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                     L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  
Sbjct: 508 LAAIPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA- 566

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    ++L   L+ + G+ +   T T       +      +        +      
Sbjct: 567 GEEFNLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL------ 620

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                               +Q+   S+         P Q  PR  R H    Q +    
Sbjct: 621 --------------------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTG 660

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   +A +G KL+ AD + IE R++A +A ++  L AF
Sbjct: 661 RLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAF 720

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
               D++  T A  F V    VT D R   K +   L Y   A     +A   G++    
Sbjct: 721 RNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQS 777

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              V    A               E     A E  F+ T   R +      +++   L  
Sbjct: 778 QAYVDRYFARYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRK 830

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              +        G A    K+  V +    ++   +  ++L     LV
Sbjct: 831 GAERMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878


>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
 gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
          Length = 922

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 118/701 (16%), Positives = 227/701 (32%), Gaps = 179/701 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----Q 55
           +D ET S  +L             ++  +F  +          H+     P +P     +
Sbjct: 350 LDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVLE 399

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            L+  LE+     +  +  ++R V     N  I +  +   T++ +    +         
Sbjct: 400 RLRPWLEDPACPKLGQHVKYDRHV---FANHGIQVRGYAHDTMLQSYVLEVHKPHGLASL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A + + +     ++L  +  K            P  +        Y   D   T ++ + 
Sbjct: 457 AERHTGRTGISYEDLCGKGAKQ----------IPFAQVPVDKAAAYSCEDSDQTLDVHRV 506

Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L P    + +L   + L+         I   G  +D       +  +     +L+QE  +
Sbjct: 507 LWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQEAYA 566

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +  G   +    ++L    F + G+ +   T T    T + VL    +  P   ++  +R
Sbjct: 567 IA-GQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 625

Query: 281 M--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +   +   KL+TL +                                 PR  R H  
Sbjct: 626 SLCKLKGTYTDKLSTLAD---------------------------------PRTGRVHTH 652

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       +++P+   I         VR   +A  G+ +  AD + IE R++A ++
Sbjct: 653 YAQAVAVTGRLSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHIS 712

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L AF  G D++  T A  F VA  QV+ +QR   KV+   L Y   +     +A 
Sbjct: 713 GDEALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSF---GLAK 769

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+     A  +        ++      ++M+E                          
Sbjct: 770 NLGIETKAAAAYID-----RYFQRYPGVKQYMEET------------------------- 799

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                       +A  +     + +  R+                 L LP   S      
Sbjct: 800 ------------KARAKARGYVETVFGRR-----------------LYLPEINSPNGPRR 830

Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVL 626
           G   R+ +N                     Q  + D++ + M      ++A K    +++
Sbjct: 831 GAAERAAINAPM------------------QGTAADLIKKAMVAVQGELDARKPEVLMIM 872

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            VHDE+V E P+ + ++    +  LM      A  +PL AE
Sbjct: 873 QVHDELVFELPEGEVDWLRREIPRLMAGVA--ALQVPLLAE 911


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 120/694 (17%), Positives = 217/694 (31%), Gaps = 166/694 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLK 58
           L ID ET S            A    ++  AF ++       P  L D      + + L 
Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L       V  N  ++  VL     +++P   +  T+V                A + 
Sbjct: 405 PILRRAQ-RKVGQNLKYDLVVLAQH-GVEVPPP-YFDTMVAHYLIAPEEPHNLDVLARQY 461

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +M    ELI     G   + + D        +    G Y   D  +  ++   L   
Sbjct: 462 LRYQMVAITELIG---SGRDQKSMRD-------VSIDEVGPYACEDTDIALQLADVLAAE 511

Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             +          E  L  +   +   G C+D  +   + + ++ E  +L+ ++  +  G
Sbjct: 512 LDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVA-G 570

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +  +    ++L   LF + GL     T T    T + VL       P    + + R  A 
Sbjct: 571 VEFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRHLA- 629

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +          P   P   R H   +Q +T
Sbjct: 630 ------------------------------KLKSTYVDGLEPLIHPETGRIHTTFNQTVT 659

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S+P+   I         +R   +   G KL+ AD   IE R+LA ++G++   
Sbjct: 660 ATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T AR F V P QVT +QR   K++   + Y   A    +    +    
Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCS---- 775

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       + + + +++    V+ 
Sbjct: 776 ----------------------------------------TREAQELIEEYQRAFPGVTR 795

Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
               LH+  E+  + G    +  +RR VP +  +           + RS+  R       
Sbjct: 796 ---YLHRVVEEARQKGYVETLLGRRRYVPNINSRNR---------AERSMAERI------ 837

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEI 632
                                  +Q    D++   M+       + GY   ++L VHDE+
Sbjct: 838 ------------------AVNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDEL 879

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E P  +      L           +G+P++ +
Sbjct: 880 VFEMPPEEVEPVRQLVEQEMKQALPLEGVPIEVD 913


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 104/694 (14%), Positives = 215/694 (30%), Gaps = 163/694 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65
           E  S +D    G      ++  + F++  +     PV   D      +    + A E   
Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRTEAQKIVNEFRPAFEKEG 456

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122
              V  N  ++  VL    N    +   +   ++A     P     +  + E       +
Sbjct: 457 ALKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179
               +ELI         +    +N  +         +Y   D  +T ++   LE      
Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADITLKLKNILEQELKTN 562

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   I   G  VD       ++       ++++E+  L  G   +
Sbjct: 563 DAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621

Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +++   LF +   +     T+T    T + VL S +       ++  +R       
Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G  +         P        + H   +Q +T   
Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   I  +G +   AD + IE R++A ++G+   ++AF
Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G+D++  T A+ + ++  +VT++QR+  K     + Y         +A    ++    
Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L+                    E +P+              +K+   +          
Sbjct: 828 KELIDG----------------YFETYPQ--------------IKEYMDKS--------- 848

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                           +AR++  +  ++ +K        LP   S             N+
Sbjct: 849 --------------IDLARRQGYIETIFGRK------RYLPDINS------------RNS 876

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
             R                +Q  + DI+   M+              ++L VHDE+    
Sbjct: 877 VVRGYAERNA-----INAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSV 931

Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
            P+  E    ++   M +  ++   +PL+A+ G+
Sbjct: 932 LPEEKEKVQKIVIEEMEN--AYHMQVPLRADCGW 963


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/631 (16%), Positives = 197/631 (31%), Gaps = 134/631 (21%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            LK  LE+  V  VA N  ++  V+K      I +  +  T++++      + +       
Sbjct: 514  LKNLLEDPSVLKVAQNLKYDYLVMKRH---GIAMQSFDDTMLMSYVVDAGNGM------- 563

Query: 117  KLSSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  M+   E  L       +        +             Y   D  VT  ++  
Sbjct: 564  ----HGMDSLSERWLGHTPIPYKDIAGTGKASVSFDFVDIDKATTYAAEDADVTLRLWHV 619

Query: 175  LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            L+P  +           E+ L  +   + +RG  VD  +   L+  +      L+ E+  
Sbjct: 620  LKPRLAAKGLTRVYERLERPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEIYR 679

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            L  G   +    ++L   LF + GL     T+T      +S  +                
Sbjct: 680  LA-GETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSASVLEDLAAVGHELP------ 732

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                R  + +   ++         P    P   R H       T
Sbjct: 733  --------------------RKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTGYALAAT 772

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  +S+P+   I         +R+  IA+ G KLV AD + IE RVLA +A      
Sbjct: 773  TTGRLSSSEPNLQNIPVRTAEGRRIRTAFIATPGHKLVSADYSQIELRVLAHVADIPQLR 832

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+   +  
Sbjct: 833  QAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAF---GLANQLSIER 889

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            +                    + +   E  P   I D    T      KA+ ++H  V  
Sbjct: 890  SEAGD----------------YIKRYFERFP--GIRDYMENT------KAFAREHGYVET 925

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            ++                                           GR   Y D+ ++   
Sbjct: 926  IF-------------------------------------------GRRAHYPDIRSSNPS 942

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
            +     + +      G   + I +A+ +    E  ++  K    ++L VHDE++ E  + 
Sbjct: 943  MRAFNERASINAPIQGSAADIIRRAMVK---MEPALDEAKLAARMLLQVHDELIFEVEEG 999

Query: 640  D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            + E    ++  +M +    A  +  PLK + 
Sbjct: 1000 EIERTLPVIVSVMENAAMPALDMRVPLKVDA 1030


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 120/694 (17%), Positives = 217/694 (31%), Gaps = 166/694 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLK 58
           L ID ET S            A    ++  AF ++       P  L D      + + L 
Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L       V  N  ++  VL     +++P   +  T+V                A + 
Sbjct: 405 PILRRAQ-RKVGQNLKYDLVVLAQH-GVEVPPP-YFDTMVAHYLIAPEEPHNLDVLARQY 461

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +M    ELI     G   + + D        +    G Y   D  +  ++   L   
Sbjct: 462 LRYQMVAITELIG---SGRDQKSMRD-------VSIDEVGPYACEDTDIALQLADVLAAE 511

Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             +          E  L  +   +   G C+D  +   + + ++ E  +L+ ++  +  G
Sbjct: 512 LDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVA-G 570

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +  +    ++L   LF + GL     T T    T + VL       P    + + R  A 
Sbjct: 571 VEFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRHLA- 629

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +          P   P   R H   +Q +T
Sbjct: 630 ------------------------------KLKSTYVDGLEPLIHPETGRIHTTFNQTVT 659

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S+P+   I         +R   +   G KL+ AD   IE R+LA ++G++   
Sbjct: 660 ATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T AR F V P QVT +QR   K++   + Y   A    +    +    
Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCS---- 775

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       + + + +++    V+ 
Sbjct: 776 ----------------------------------------TREAQELIEEYQRAFPGVTR 795

Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
               LH+  E+  + G    +  +RR VP +  +           + RS+  R       
Sbjct: 796 ---YLHRVVEKARQKGYVETLLGRRRYVPNINSRNR---------AERSMAERI------ 837

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEI 632
                                  +Q    D++   M+       + GY   ++L VHDE+
Sbjct: 838 ------------------AVNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDEL 879

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E P  +      L           +G+P++ +
Sbjct: 880 VFEMPPEEVEPVRQLVEQEMKQALPREGVPIEVD 913


>gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 921

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/555 (17%), Positives = 172/555 (30%), Gaps = 80/555 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177
           E+  +  K  + + +          A    G Y   +  +T  + +           L+P
Sbjct: 467 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +    N+    +    E    +   G             +++   L     +     
Sbjct: 787 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDV 546
              G A    K+  V
Sbjct: 840 PMQGTAADIIKKAMV 854


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/599 (15%), Positives = 192/599 (32%), Gaps = 85/599 (14%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65
           E  S +D    G      ++  + F++  +     PV   D      +    + A E   
Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRAEAQKIVNEFRPAFEKEG 456

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122
           V  V  N  ++  VL    N    +   +   ++A     P     +  + E       +
Sbjct: 457 VLKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179
               +ELI         +    +N  +         +Y   D  VT ++   LE      
Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   +   G  VD       ++       ++++E+  L  G   +
Sbjct: 563 DAEKLFYEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621

Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +++   LF +   +     T+T    T + VL S +       ++  +R       
Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G  +         P        + H   +Q +T   
Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   I  +G +   AD + IE R++A ++G+   ++AF
Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAF 770

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G+D++  T A+ + ++  +VT++QR+  K     + Y         +A    ++    
Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L+        + +     +   +   + A    +I T   R K+     +SR S +  
Sbjct: 828 KELIDG------YFETYPQIKEYMDKSIDLARGQGYIETIFGR-KRYLPDINSRNSVVRG 880

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +        G A    K   V +    + +     ++L     L +  +   +  +
Sbjct: 881 YAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEKV 939


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 118/645 (18%), Positives = 212/645 (32%), Gaps = 142/645 (22%)

Query: 50  DPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
              +P       LK+ LE+  +  +  N  ++  V+       I +     T++++ +  
Sbjct: 432 GGQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVM---LQHGIAMTPIDDTMLISYALD 488

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             S L   G   +LS + +          C            KP          EY   D
Sbjct: 489 ASSGLAGHGMD-ELSERFLGHKPISYKELC------GSGRSAKPIAAVEIDRVTEYASED 541

Query: 165 VTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             VT  I++ L+P  + E          + L  +   +  RG  VD  +   L+     +
Sbjct: 542 ADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRGIMVDRQILSRLSGNFAQK 601

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLT 270
           +  L+ E+  +  G   +    ++L   LF + GL     T++    T  RVL       
Sbjct: 602 QAALEDEIAKMA-GEEFNPGSPKQLGEILFGKLGLPGGKKTKSGQWSTDARVLEDLAAEG 660

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
            +  +   +  + ++      +TL   M+ +GR+                          
Sbjct: 661 HELPRRVVDWRQLTKLKGTYTDTLPHHMDENGRI-------------------------- 694

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
                H       T      +S+P+   I         +R+  +A +GKKL+ AD + IE
Sbjct: 695 -----HTSFSMASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPKGKKLLSADYSQIE 749

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A       AF+ G D++  T +  FNV    +    R   K +   + Y   A
Sbjct: 750 LRILAHIADIPQLKDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINFGIIYGISA 809

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +A+   +        +K       +E       +M +                  
Sbjct: 810 F---GLANQLAIPREEAGQYIK-----RYFERFPGIRDYMDKT----------------- 844

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             KA+ +KH  V  L+                    +R   P +  K          P  
Sbjct: 845 --KAFAKKHGYVETLF-------------------GRRAHYPDITAKN---------PQI 874

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
           RS       N R+ +N   +         G   + I +A+ R    EG +        ++
Sbjct: 875 RSF------NERAAINAPIQ---------GTAADIIRRAMVR---MEGALADANLSAMML 916

Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEG 667
           L VHDE+V E  + +      +   +M +   P     +PL+ E 
Sbjct: 917 LQVHDELVFEVEEDEIDETIEVVTNIMEAAASPRVILSVPLEVEA 961


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 117/684 (17%), Positives = 214/684 (31%), Gaps = 167/684 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQ 399

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+P    E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +      +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    ++++N+ +   + +P                     +  
Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT--DEFNASMLYHLMT 652
           E+V E      DE +   +  +M 
Sbjct: 878 ELVFEADQNIADELS-KQIATVME 900


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
             P +L        + + LK  LE+ + TI+  N  ++  VL       + I       +
Sbjct: 365 GAPAQL----DKEEVLRKLKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417

Query: 99  LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           LA      S+        ALK   + M + +++  +  K  +   +              
Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205
              Y   D  VT ++  +L PL  KE             L  +   +  RG  VD A+  
Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQ 527

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261
             +  +      L+Q+   L  G   +    ++L+T L+ E  L +         +T + 
Sbjct: 528 AQSIELSGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL       P    +  +R                                 ++      
Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P Q  P   R H   +Q +T      +++P+   I         +R   IA  G ++
Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K + 
Sbjct: 676 VAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y   +     +    G+  +     +                    +     A   
Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAQEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R +      H+   +      +A       G A       D+  + M K  +
Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                                                   L +N V+A            
Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                  +++ VHDE+V E  + D E     +   M      A  +PL  +
Sbjct: 849 ------HLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891


>gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a]
 gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a]
          Length = 921

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/555 (16%), Positives = 171/555 (30%), Gaps = 80/555 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177
           E+  +  K  + + +          A    G Y   +  +T  + +           L+P
Sbjct: 467 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +    N+    +    E    +   G             +++   L     +     
Sbjct: 787 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDV 546
              G A    K+  V
Sbjct: 840 PMQGTAADIIKKAMV 854


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/628 (17%), Positives = 190/628 (30%), Gaps = 98/628 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---------- 50
           M  +  D ET S +DL   G         ++  +F  +D+        H+          
Sbjct: 362 MDWVAFDTETDS-LDLF-AG--------RIVGVSFSIEDNRAAYVPLAHNYPGAPAQLDR 411

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
             +   LK  LE+   T V  N+ F+  +L    N  I +   +   +L         L 
Sbjct: 412 DTVLADLKPWLEDASRTKVMQNAKFDSHMLA---NHGITLRGVLFDTMLESYV-----LD 463

Query: 111 AVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +      + S   +  G+  I      E       +            G Y   D  VT 
Sbjct: 464 STATRHDMDSLAAKYLGRSTITF----EDIAGKGAKALSFPEIHLEQAGPYAAEDADVTG 519

Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L P             + EQ L  +   +   G  VD        + +  ER   
Sbjct: 520 QLQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAGVRVDRGELAIQGKAIG-ERIAA 578

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274
            ++      G   +    ++LK  LF E  L +   T      T +  L       P   
Sbjct: 579 VEQAAFKEAGREFNLGSTKQLKELLFDELKLPVGKKTPKGEPSTDEEALGELVGSHPLPA 638

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +                                 + G S+         P        R
Sbjct: 639 LIL-------------------------------DYRGLSKLKSTYIDRLPEDIHTHTGR 667

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q +T      +S+P+   I         +R   +A  G KL+ AD + IE R++
Sbjct: 668 VHSAFHQAVTATGRLSSSNPNLQNIPIRSEEGRRIRQAFVADPGCKLISADYSQIELRIM 727

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ ++    AF  GED++  T A  F V   +V+ +QR   K +   L Y   A    
Sbjct: 728 AHLSEDERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINFGLIYGMSAF--- 784

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A    +        +    A   +     +   M++   +    +   G         
Sbjct: 785 GLAKQLDVPRGEAQAYIDLYFAR--YPGVAKYMERMRQQARQMGYVETVFGRRL-----Y 837

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
             + HSR  +      +        G A    K   + L  +        ++L     L+
Sbjct: 838 LPEIHSRNGQRRQYAERTAINAPMQGTAADIIKIAMIALHKLLVVPGRARMILQVHDELI 897

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL 597
           +    ++ + +    R    + T   KL
Sbjct: 898 FEVPESDVAEIEPIIR---AQMTGAAKL 922


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/628 (14%), Positives = 185/628 (29%), Gaps = 133/628 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEA 115
           LK  LEN D+  +  N  ++ T+     N  I +       +L +              A
Sbjct: 435 LKPVLENADIRKIGQNLKYDLTI---FANHGIQVQGVAFDTMLESYVLNSTGRHNMDDLA 491

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +    + L  +     T + +       +              +    E    L
Sbjct: 492 ERYLGHQTISFETLAGKGKNQLTFDKIPLAQAAEYAAEDADVTMKLHQTLWAELEKTPTL 551

Query: 176 EPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             L    E  L  +   I   G  +D       +Q      T L+ +   +  G   +  
Sbjct: 552 TTLFKDIELPLVSVLSRIERNGVLIDAQALRKQSQEFGERLTALEAKAHEIA-GEAFNLA 610

Query: 235 CLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             ++L+  LF +  L +         +T + VL            +  +R          
Sbjct: 611 SPKQLQEILFNKLHLPVLQKTPKGDPSTKEEVLEELAFDHELPKLLVEHR---------- 660

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                                G ++         P    P   R H    Q +T      
Sbjct: 661 ---------------------GLAKLKSTYTDKLPQMINPHTGRVHTSYHQAVTATGRLS 699

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           ++DP+   I         +R   +A +G +++ AD + IE R++A ++G++    AF  G
Sbjct: 700 STDPNLQNIPIRNEEGRRIRQAFVARDGYRIIAADYSQIELRIMAHLSGDKGLTTAFVEG 759

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++ +T +  F +    V+ +QR   K +   L Y   A     ++    ++       
Sbjct: 760 RDIHRSTASEIFGIPLEDVSAEQRRSAKAINFGLIYGMSAF---GLSRQLAISRMEAKKY 816

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +                                             Q++  V    +++ 
Sbjct: 817 MDLYF-----------------------------------------QRYPNVQTFMHDIQ 835

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +  +   +     +  +R  +P +              SG +   R  G  R  +N    
Sbjct: 836 EKAKA--QGFVETLFGRRLYLPDIK-------------SGNAS--RRKGAERVAINAPM- 877

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----IVLTVHDEIVCET-PDT 639
                            Q  + DI+   M++            +++ VHDE+V E   + 
Sbjct: 878 -----------------QGTAADIIKRAMIDIDHVIAGDEDILMIMQVHDELVFEVRSEK 920

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEG 667
            EF + ++   M +       +PL  E 
Sbjct: 921 VEFYSELIKQKMETAAQ--LDVPLIVEA 946


>gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83]
          Length = 1004

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/654 (17%), Positives = 198/654 (30%), Gaps = 144/654 (22%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
              PV+    V + +    LKE LE+  V  V  N  +   V+K      I +  +  T+
Sbjct: 461 GGGPVDSQVPVREAL--SRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTM 515

Query: 98  VLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           +++        A      A +         K++                +          
Sbjct: 516 LMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDV----------TGTGRSSLTFDFVDIDK 565

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHT 206
              Y   D  +   ++  L+P  +           E+ L  +   + +RG  VD  +   
Sbjct: 566 ATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSR 625

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262
           L+  +      L+ E+  L  G   +    ++L   LF + GL     T+T    T  +V
Sbjct: 626 LSGELAQGAAALEDEIYRLA-GETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQV 684

Query: 263 LSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           L            ++ + R                                 ++      
Sbjct: 685 LEDLAAAGHDLPRKIVDWRQL-------------------------------TKLKSTYT 713

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P    P   R H       T      +SDP+   I         +R+  +A+ G KL
Sbjct: 714 DALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKL 773

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + IE RVLA +A      +AF  G D++  T +  F V    +  + R   K + 
Sbjct: 774 VSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAIN 833

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A     +A+   +  +                    + +   E  P      
Sbjct: 834 FGIIYGISAF---GLANQLSIERSEAGD----------------YIKRYFERFP------ 868

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                         R                + +TI   +A     R             
Sbjct: 869 ------------GIRDYMENTKAF--ARENGYVETIFGRRAHYPDIRSSN---------- 904

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                 PS R+       N R+ +N   +         G   + I +A+ +    E  + 
Sbjct: 905 ------PSMRAF------NERASINAPIQ---------GSAADIIRRAMVK---MEPALE 940

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           A K    ++L VHDE++ E  D + E    ++  +M +    A  +  PLK + 
Sbjct: 941 AAKLSARMLLQVHDELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDA 994


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 105/694 (15%), Positives = 215/694 (30%), Gaps = 163/694 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65
           E  S +D    G      ++  + F++  +     PV   D      +    + A E   
Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRTEAQKIVNEFRPAFEKEG 456

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122
              V  N  ++  VL    N    +   +   ++A     P     +  + E       +
Sbjct: 457 ALKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179
               +ELI         +    +N  +         +Y   D  VT ++   LE      
Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   I   G  VD       ++       ++++E+  L  G   +
Sbjct: 563 DAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621

Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +++   LF +   +     T+T    T + VL S +       ++  +R       
Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G  +         P        + H   +Q +T   
Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   I  +G +   AD + IE R++A ++G+   ++AF
Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G+D++  T A+ + ++  +VT++QR+  K     + Y         +A    ++    
Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L+                    E +P+              +K+   +          
Sbjct: 828 KELIDG----------------YFETYPQ--------------IKEYMDKS--------- 848

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                           +AR++  +  ++ +K        LP   S             N+
Sbjct: 849 --------------IDLARRQGYIETIFGRK------RYLPDINS------------RNS 876

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
             R                +Q  + DI+   M+              ++L VHDE+    
Sbjct: 877 VVRGYAERNA-----INAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSV 931

Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
            P+  E    ++   M +  ++   +PL+A+ G+
Sbjct: 932 LPEEKEKVQKIVIEEMEN--AYHMQVPLRADCGW 963


>gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
 gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
          Length = 921

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/539 (15%), Positives = 171/539 (31%), Gaps = 77/539 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
             LK  LE+ ++  V  N  ++ +VL     + +         +L     + + +     
Sbjct: 395 DALKPILEDDNLKKVGQNLKYDMSVLAEDVGITL--RGVAYDTMLESYVLDSVATRHDMD 452

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             ALK   +K    +E+  +  K  T   +                 Y   D  VT  + 
Sbjct: 453 SLALKYLGRKTISFEEIAGKGAKQLTFNQV----------GLHEASRYAAEDADVTLRLH 502

Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P   KE             L  +   I   G  VD  L    +Q +     +L ++
Sbjct: 503 QTLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQEK 562

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              +  G   +    ++L   L+ +  + +   T      T + VL       P      
Sbjct: 563 ACEIA-GQEFNLSSPKQLGEILYQKLEIPVIKKTPKGAPSTAEAVLQELALEYPLP---- 617

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                      +  + + G ++         P     R  R H 
Sbjct: 618 ---------------------------QVIMDYRGVAKLKNTYTDKLPELINQRTGRVHT 650

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +       +SDP+   I         +R   +A +G+K+V  D + IE R++A +
Sbjct: 651 SYHQAVAATGRLSSSDPNLQNIPVRSEEGRKIRQAFLAPKGRKIVACDYSQIELRIMAHL 710

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++    AFE G D++  T A  +     +V+ + R   K +   L Y   A     +A
Sbjct: 711 SDDKGLTDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAF---GLA 767

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              GL        +      E +   + +    +    ++   +   G           +
Sbjct: 768 KQLGLPRKEAQEYID--LYFERYPGVKKYMADTRALAADNGYVETVYGRRL-----YLPE 820

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570
            HS+  +      +A       G A    K+  + +  +++    +  +++     LV+
Sbjct: 821 IHSKNGQRRQAAERAAINAPMQGTAADIIKKAMIKVHDWLETTDFDAKMIMQVHDELVF 879


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/605 (15%), Positives = 183/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N    +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  VT ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  ++++E+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +   +     T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   +   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/624 (16%), Positives = 187/624 (29%), Gaps = 158/624 (25%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-----LPSAL 109
            +LK  L +  V     NS      LK     DI +   +   +LA         LP   
Sbjct: 359 SILKPILTDISVKKYILNSKECTVFLKKH---DIELEGLVFDPLLAYYLLKPSGKLPGLR 415

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + + L LS  +  +   L   F                      +F            
Sbjct: 416 DLLDQELSLSLPEDIKEDNLYLVFMDN-------------------IFKLAEGM--VPKL 454

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E  + +E  +  E  L  +   +   G  VD     +L++  + E   L+ ++  L  G 
Sbjct: 455 EDMELIELFNDIEIPLITVLAELEYNGIKVDAEYLESLSRKWEEELNGLESKIHELA-GE 513

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    ++L   LF + GL +   T+T      +VL   +   P    +   R      
Sbjct: 514 KFNINSPKQLGGILFEKLGLPVIKKTKTGYSTGAKVLEKLEDKHPIIPLISEYRQLM--- 570

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                       +         PP   P   R H   +Q++T  
Sbjct: 571 ----------------------------KLKSTYVDALPPMINPDTGRLHTSFNQMVTAT 602

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I         +R   I   E   L+ AD + IE RVLA ++ ++    
Sbjct: 603 GRLSSTEPNLQNIPVRTDEGREIRRAFITENEDWVLLAADYSQIELRVLAHISDDEGLKA 662

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF TG+D++  T +  F V P +VT + R   KV+   + Y         +A   G++  
Sbjct: 663 AFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVINFGIAYGMSPY---GLARDLGISRQ 719

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +  +                                             +   R + +
Sbjct: 720 EASDYIN--------------------------------------------KYFERFTGV 735

Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            + + +   +    G    I  +RR +P +  +             RS         R+ 
Sbjct: 736 KDYMERVVTEAKTKGYVTTIFNRRRYIPEINSRNYHR---------RSFA------ERTA 780

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633
           +NT                   +Q  + DI+   M+              I+L VHDE++
Sbjct: 781 INTP------------------IQGTAADIMKLAMIKVYNRLKENGSPARILLQVHDELI 822

Query: 634 CETPDTDEFNASMLYH-LMTSNPS 656
            E P  D    + +    M     
Sbjct: 823 LEVPREDLTEMARIVKSEMEKAVD 846


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/693 (15%), Positives = 202/693 (29%), Gaps = 168/693 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------- 56
            +D ET S   +          D  ++       +   +L+       + +         
Sbjct: 384 SLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQIKKETPNQLSIE 433

Query: 57  -----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
                L+  +E+        NS F+R +    FN  + +       +LA           
Sbjct: 434 DVFSKLRTWIEDPKKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN------ 484

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                      + E    +  F K  + +    +NK            YC  DV +T +I
Sbjct: 485 -----NQEKHGLSEISFRLFGF-KPPSFKETVGKNKDFSFVDINEASIYCGYDVFLTFKI 538

Query: 172 FKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            K  +                 E  L  +   +   G  +D+     L++ +      ++
Sbjct: 539 VKIFKERFSKEKDELIKLFKEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIE 598

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274
            ++  L      +    ++L   LF +  L  +   +T     T   VL           
Sbjct: 599 NKVFELAD-ENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDALVLERLVDEHEIIQ 657

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R                                 S+         P     +  R
Sbjct: 658 HLIKHR-------------------------------TISKLLSTYIDALPNLINEKTGR 686

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H   +Q  T      +S+P+   I      S  +R   +  +  KL+ AD + IE R+L
Sbjct: 687 VHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F     +++ D+R +GK +   + Y  G    +
Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IK 801

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           K A +TG++       +      E +     F     E     A+   ++ T   R ++ 
Sbjct: 802 KFARSTGVSTPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE- 854

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                     K DKN L  ++       
Sbjct: 855 -----------------------------------------FKFDKNGLGRLIGKDPY-- 871

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG----- 621
                          +   R       L       +Q  S DI+   M+   K       
Sbjct: 872 -----------EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNF 920

Query: 622 -YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
              ++L VHDE++ E  PD+ E    ++   M 
Sbjct: 921 PAKMLLQVHDELLFEVEPDSLEITTKLVKKTME 953


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/630 (16%), Positives = 207/630 (32%), Gaps = 146/630 (23%)

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118
           E++ V  +  N  ++  V+K     DI I  +  T++L+ +     L   +  + E  + 
Sbjct: 447 EDSAVLKIGQNIKYDWLVVKQY---DIVIRSFDDTMLLSYALDAGALTHNMDDLSE--RW 501

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K    K+L     K  +            +   +    Y   D  +T  +++ L+P 
Sbjct: 502 LEHKPIAYKDLTHNGKKITS----------FAQVDLKQATLYAAEDADITLRLWQVLKPQ 551

Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        ++ L  +   + +RG  VD  +   L+  +      L++E+      
Sbjct: 552 LVARGMTKIYERLDRPLVEVLARMEERGILVDRQILLRLSGELAQAALILEEEIYKQAD- 610

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN-KKLTPQAIQVFNNRMRA 283
              +    ++L   LF + GL     T+    +T  + L     +      ++   R  A
Sbjct: 611 EKFNLASPKQLGDILFDKMGLPGGAKTKGGQWSTSAQTLEELSAEGHTLPRKIIEWRQLA 670

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                          +         P   LP+  R H      I
Sbjct: 671 -------------------------------KLKSTYADALPSYILPKTGRVHTNYSLAI 699

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +S+P+   I         +R+  IA +G  L+ AD + IE R+LA +A  +  
Sbjct: 700 TSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKAL 759

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF  G D++  T ++ F VA   +  D R   K +   + Y   A     +A+  G++
Sbjct: 760 KEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAF---GLANQLGIS 816

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                            ++A  + +   E  P   I+D       E+ K   R       
Sbjct: 817 R----------------QEAGRYIQLYFERFP--GIKDYM-----EKTKSFAR------- 846

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                    + +TI                                GR + Y ++     
Sbjct: 847 ------ENGYVETIF-------------------------------GRRIHYPEIKAKNV 869

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
            + +   +        G   + I +A+   I  E  +        ++L VHDE++ E P+
Sbjct: 870 KIRSLNERAAINAPIQGSAADIIRRAM---IQMEDALKEENLSAKMLLQVHDELIFEVPE 926

Query: 639 TDE-FNASMLYHLM--TSNPSWAKGLPLKA 665
            +     +++  +M   + P  +  +PL+ 
Sbjct: 927 EESKKTMAVVKDVMENATMPVLSLSVPLEV 956


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/654 (16%), Positives = 196/654 (29%), Gaps = 144/654 (22%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
              PV+         +   LKE LE+  V  V  N  +   V+K      I +  +  T+
Sbjct: 461 GGGPVDS-QVPGRETL-SRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTM 515

Query: 98  VLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           +++        A      A +         K++                +          
Sbjct: 516 LMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDV----------TGTGRSSLTFDFVDIDK 565

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHT 206
              Y   D  +   ++  L+P  +           E+ L  +   + +RG  VD  +   
Sbjct: 566 ATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSR 625

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262
           L+  +      L+ E+  L  G   +    ++L   LF + GL     T+T    T  +V
Sbjct: 626 LSGELAQGAAALEDEIYRLA-GETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQV 684

Query: 263 LSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           L            ++ + R                                 ++      
Sbjct: 685 LEDLAAAGHDLPRKIVDWRQL-------------------------------TKLKSTYT 713

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P    P   R H       T      +SDP+   I         +R+  +A+ G KL
Sbjct: 714 DALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKL 773

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + IE RVLA +A      +AF  G D++  T +  F V    +  + R   K + 
Sbjct: 774 VSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAIN 833

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A     +A+   +  +                    + +   E  P      
Sbjct: 834 FGIIYGISAF---GLANQLSIERSEAGD----------------YIKRYFERFP------ 868

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                         R                + +TI   +A     R             
Sbjct: 869 ------------GIRDYMENTKAF--ARENGYVETIFGRRAHYPDIRSSN---------- 904

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                 PS R+       N R+ +N   +         G   + I +A+ +    E  + 
Sbjct: 905 ------PSMRAF------NERASINAPIQ---------GSAADIIRRAMVK---MEPALE 940

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           A K    ++L VHDE++ E  D + E    ++  +M +    A  +  PLK + 
Sbjct: 941 AAKLSARMLLQVHDELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDA 994


>gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642]
          Length = 921

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/555 (16%), Positives = 171/555 (30%), Gaps = 80/555 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177
           ++  +  K  + + +          A    G Y   +  +T  + +           L+P
Sbjct: 467 DIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +    N+    +    E    +   G             +++   L     +     
Sbjct: 787 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDV 546
              G A    K+  V
Sbjct: 840 PMQGTAADIIKKAMV 854


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/642 (17%), Positives = 195/642 (30%), Gaps = 154/642 (23%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE- 114
           +LK  LE+  V  +A N  ++  V+       + +  +  T++L+ +         + E 
Sbjct: 266 ILKPMLEDPAVLKIAQNLKYDWLVMTHY---GVNVTSYDDTMLLSYTVDAGKGGNGMDEL 322

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K    KE+    C        +D+              Y   D  VT  +++ 
Sbjct: 323 SERWLGHKPIPFKEV----CGSGKSMITFDK------VPLDKATAYAAEDADVTLRLWQV 372

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L+P  +           E+ +  +   +  RG  VD  +   L+         L+ E+  
Sbjct: 373 LKPRLASDRMATVYETLERPMVPVLARMEQRGIAVDRQMLSRLSGDFAQGMAGLEAEIHE 432

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF + GL     T+T    T   VL            ++   
Sbjct: 433 LA-GESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSASVLEDLAAEGHTLPSKIVEW 491

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+         P    P   R H   
Sbjct: 492 RQL-------------------------------SKLKSTYSDALPGYIHPDTKRVHTSY 520

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
               T      +S+P+   I         +R   +A +G KL+ AD + IE RVLA MA 
Sbjct: 521 ALAATTTGRLSSSEPNLQNIPVRTAAGRKIRQAFVAEKGMKLISADYSQIELRVLAHMAD 580

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                KAFE G D++  T +  F      +    R   K +   + Y   A     +A+ 
Sbjct: 581 IPQLKKAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAF---GLAAQ 637

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                   A ++ +   E  P               +K+      
Sbjct: 638 LGISRGE----------------ASDYIKTYFERFP--------------GIKEYMEATK 667

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            +V                    I  RK     +              P+ R+       
Sbjct: 668 KQV------------HATGYVTTIFGRKAHYPDVNTKN----------PNMRNFY----- 700

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
             R+ +N                    +Q  + DIL   M+         K    ++L V
Sbjct: 701 -ERAAINAP------------------IQGSAADILRRAMVRMEDRLLSSKLDAQMLLQV 741

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667
           HDE++ E P+   +    ++  +M +   P     +PL+ + 
Sbjct: 742 HDELIFEVPEVQVDATIPLIKDVMENACDPVLKLSVPLQVDA 783


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
             P +L        + + LK  LE+ + TI+  N  ++  VL       + I       +
Sbjct: 365 GAPAQL----DKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417

Query: 99  LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           LA      S+        ALK   + M + +++  +  K  +   +              
Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205
              Y   D  VT ++  +L PL  KE             L  +   +  RG  VD A+  
Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQ 527

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261
             +  +      L+Q+   L  G   +    ++L+T L+ E  L +         +T + 
Sbjct: 528 AQSIELGGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL       P    +  +R                                 ++      
Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P Q  P   R H   +Q +T      +++P+   I         +R   IA  G ++
Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + +E R++A ++ +   +KAF+   D++  T A  F V   QVT +QR   K + 
Sbjct: 676 VAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y   +     +    G+  +     +                    +     A   
Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAQEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R +      H+   +      +A       G A       D+  + M K  +
Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                                                   L +N V+A            
Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                  +++ VHDE+V E  + D E     +   M      A  +PL  +
Sbjct: 849 ------HLIMQVHDELVFEMAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891


>gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7]
          Length = 921

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/555 (16%), Positives = 170/555 (30%), Gaps = 80/555 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPEKIKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +             K  +      +
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTAPRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177
           E+  +  K  + + +          A    G Y   +  +T  + +           L+P
Sbjct: 467 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +    N+    +    E    +   G             +++   L     +     
Sbjct: 787 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDV 546
              G A    K+  V
Sbjct: 840 PMQGTAADIIKKAMV 854


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/649 (17%), Positives = 200/649 (30%), Gaps = 157/649 (24%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL 109
             +P+ LK  LE+  V  VA N  ++  +LK      I    +  T++++        A 
Sbjct: 464 DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAH 519

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                + K         K++                N             Y   D  VT 
Sbjct: 520 GMDPLSEKFLGHTPIPYKDVA----------GSGRANVTFDLVDIDRATHYAAEDADVTL 569

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            ++  L+P  +           E+ L  +   +  RG  VD  +   L+  +     +L+
Sbjct: 570 RLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLE 629

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274
            E+ +L  G   +    ++L   LF + GL     T+T    T   VL            
Sbjct: 630 DEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 688

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++ + R                                 ++         P    P   R
Sbjct: 689 KIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETKR 717

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H       T      +S+P+   I         +R+  I++ G KL+ AD + IE RVL
Sbjct: 718 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 777

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A      KAFE G D++  T +  F V    +  + R   K +   + Y   A    
Sbjct: 778 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF--- 834

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A+   +  +     +K      ++ +     R   E+    A +  ++ T        
Sbjct: 835 GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG----- 883

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                           +R + P +             PS R+  
Sbjct: 884 --------------------------------RRINYPEIRSSN---------PSVRAF- 901

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------- 622
                N R+ +N                    +Q  + D++   M+    A         
Sbjct: 902 -----NERAAINAP------------------IQGSAADVIRRAMIKIEPALAEAGLAER 938

Query: 623 -DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             ++L VHDE++ E  D D +    ++  +M +    A  +  PLK + 
Sbjct: 939 VRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDA 987


>gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15]
          Length = 868

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/560 (18%), Positives = 187/560 (33%), Gaps = 82/560 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64
           D     + +Y  D  ++  +F             HD            +   LK  LEN 
Sbjct: 295 DTETTSL-RYM-DAEIVGVSFAVKPGEAAYVPLGHDYMGAPEQLDRDQVLDQLKPLLENP 352

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           D+  V  N  +++ VL    N  I +       +L     N + +       A+    +K
Sbjct: 353 DLAKVGQNLKYDKNVLA---NHGITLEGIAEDTMLESYVLNSVATRHDMDSLAMYYLGEK 409

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
               + +  +  K  T   +                 Y   D  +T  + + L P     
Sbjct: 410 TTSFESIAGKGAKQLTFNQI----------DLEKAAPYAAEDADITLRLHQTLRPKLKET 459

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     +  L  +   +  RG  +  +     +Q +     +L++E   +  G   
Sbjct: 460 GKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEKEAHEVA-GETF 518

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L+   + + GL +    +   ++  S   + +P                    
Sbjct: 519 NLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCFRNSP-------------------- 558

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                   ++   R  L+    S+         P     R  R H    Q +T      +
Sbjct: 559 --------TNTNCRVILEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSS 610

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           S+P+   I         +R   IA EG KLV AD + IE R++A ++G++  LKAFE GE
Sbjct: 611 SEPNLQNIPIRSEQGRRIRQAFIAPEGYKLVAADYSQIELRIMAHLSGDKGLLKAFEKGE 670

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T +  F V+   V+ DQR   K +   L Y   A     ++    +        +
Sbjct: 671 DIHKATASEVFGVSLDDVSSDQRRSAKAINFGLIYGMSAF---GLSRQLDVERKLAQEYI 727

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                   +E      ++M +N  + A +D F+ T   R +    + ++R  +L     +
Sbjct: 728 D-----RYFERYPGVLKYM-DNIRKQAHDDGFVETLFGR-RLYLPEINARNKQLQQAAER 780

Query: 527 AFEQTIENGKAIIARKRRDV 546
                   G A    KR  V
Sbjct: 781 TAINAPMQGTAADIIKRAMV 800


>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 942

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 115/680 (16%), Positives = 208/680 (30%), Gaps = 172/680 (25%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEA-----LENTD 65
           +D     +  +A    ++  +              H   +  + + L  A     LE+  
Sbjct: 371 VDTETTSLDAFA--AELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLARMKSWLESAT 428

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKLSSQK 122
              V  N  ++  +     N  I +   +   +L      + LP  + ++ E        
Sbjct: 429 HLKVGQNLKYDSHI---FANYGITLKGVVFDTLLESYVLESHLPHNMDSLAERH------ 479

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
              G + I     C    H+  +D      +   ++  +Y   D  +T  +   L P   
Sbjct: 480 --LGMKTIRYEEVCGKGVHQIGFD------QVDLKIATDYAAEDADITLRLHLELWPQIQ 531

Query: 181 KEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +   L Y+ +            +   G  +D AL     Q V     +L+ E+  L  G 
Sbjct: 532 ESPGLLYVYEKVEMPAMRVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEIHKLA-GQ 590

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             + +  +++   LF +  L +   T +    T + VL    +  P   ++ + R  A  
Sbjct: 591 PFNIQSPKQIAEILFGQLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPARILDYRSLA-- 648

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                        +         P    P+  R H    Q    
Sbjct: 649 -----------------------------KLMSTYIEKLPRMADPKTGRVHTNFSQATAV 679

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   I +EG KL+ AD + IE R++A +A ++  L 
Sbjct: 680 TGRLASSDPNLQNIPVRTEEGRRIREAFIPAEGCKLLSADYSQIELRIMAHIAEDENLLT 739

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F V    V+ +QR   KV+   L Y   A     +A   G+  +
Sbjct: 740 AFRDGKDVHQATAAEIFGVPLDDVSSEQRRYAKVINFGLIYGMSAF---GLAGNLGIECS 796

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
              + +                                             +   R   +
Sbjct: 797 AAQNYIA--------------------------------------------KYFDRYPGV 812

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSY 579
              + +   +  ENG       RR               L  P  +     R  G  R+ 
Sbjct: 813 AQYMERTRLEARENGYVETVFGRR---------------LWSPEIKGSNGPRRQGAERAA 857

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
           +N                     Q  + D++   M+         +    ++L VHDE+V
Sbjct: 858 INAPM------------------QGTAADLIKLAMIAVEDWFEKEQLKTKMLLQVHDELV 899

Query: 634 CETP-DTDEFNASMLYHLMT 652
            + P D  E   + L +LM 
Sbjct: 900 FDVPLDEIELLQAKLPNLMC 919


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 197/584 (33%), Gaps = 84/584 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVA 70
           D    GI   A +  ++  +F F+           +     V+    K   E+  +  + 
Sbjct: 379 DTETTGID--ALNAQLVGMSFSFEKGKAFYVPFPENQEDAQVLADKFKPFFESESIEKIG 436

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  +L       + I   +   ++A     P         +        +  ++L
Sbjct: 437 QNIKYDLKILSHY---GVQIKGKLFDTMIAHYLINPDMRHNMDVLSETYLKYSPKSIEDL 493

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181
           I +  K +               +     EY   D  +T ++ +   P+  K        
Sbjct: 494 IGKKGKNQKS---------MRDVSLEEIKEYAAEDADITYQLKQNFSPILDKAETKKLFE 544

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +DV    +++  + +E   L+Q++   T G   +    ++L
Sbjct: 545 EIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKIYE-TAGEKFNLASPKQL 603

Query: 240 KTWLFLET--GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
              LF +   G   +  T+T    T + +LS      P    +   R             
Sbjct: 604 GDVLFDKMKIGGAKQKKTKTGQYATGEEILSYLANDNPIVKDILEWRQ------------ 651

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
                                +         P Q   +  R H +  Q +       +++
Sbjct: 652 -------------------MVKLQSTYIDALPNQVDKKTGRVHTDYMQTVAATGRLSSNN 692

Query: 354 PDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   I   E   L+ AD + IE R++A ++GE+  + AF+  +D
Sbjct: 693 PNLQNIPVRTERGRLIRKAFIPRNENYTLISADYSQIELRIIAALSGEENMIAAFQNNQD 752

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++ +T A+ FNVA   VTK+QR+  K +   + Y   A     +++ T L+    A L+ 
Sbjct: 753 IHKSTAAKVFNVALEDVTKEQRSNAKTVNFGIIYGVSAF---GLSNQTSLSRKESAELID 809

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
              A           +    N  + A E+ ++ T   R ++  +  +S    + +   + 
Sbjct: 810 AYYATYPK------LKSYMSNQVDFARENGYVQTVLGR-RRYLKDINSANMMVKSGAERN 862

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
                  G A    K   + +      +N    ++L     LV+
Sbjct: 863 AVNAPIQGSAADIIKIAMINIHKKLTQENWQSKMLLQVHDELVF 906


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 119/699 (17%), Positives = 217/699 (31%), Gaps = 175/699 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---- 60
           ID ET S  +L             ++  +F  +          H  P  P  L  A    
Sbjct: 349 IDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVLA 398

Query: 61  -----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
                LE+     +  +  ++R V     N  I +  +   T++ +    +         
Sbjct: 399 RLKPWLEDPKHPKLGQHVKYDRHV---FANHGIEVRGYVHDTMLQSYVLEVHKPHGLASL 455

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A + + +     ++L  +  K            P  +        Y   D   T ++ + 
Sbjct: 456 AERHTGRTGISYEDLCGKGAKQ----------IPFSQVPVDKAAAYSCEDSDQTLDVHRV 505

Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L P    +++L   + L+         I   G  +D       +  +     +L+QE   
Sbjct: 506 LWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQEAYD 565

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +  G   +    ++L    F + G+ +   T T    T + VL    +  P   ++  +R
Sbjct: 566 IA-GQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 624

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                     +L  L  + T + +         PR  R H    
Sbjct: 625 --------------------------SLSKLKGTYTDKLAQLA-----DPRTGRVHTHYA 653

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       ++DP+   I         VR   +A  G+ +   D + IE R++A ++G+
Sbjct: 654 QAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF  G D++  T A  F VA  QVT +QR   KV+   L Y   +     +A   
Sbjct: 714 EALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSY---GLAKNL 770

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++     + +                                             +   
Sbjct: 771 GIDNTAAKNYID--------------------------------------------RYFQ 786

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVG 574
           R   +W  +     Q    G       RR               L LP   S    R   
Sbjct: 787 RYPGVWQYMQDTKAQAKARGYVETVFGRR---------------LYLPEINSPNGPRRSA 831

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628
             R+ +N                     Q  + D++ + M+    A         +++ V
Sbjct: 832 AERAAINAPM------------------QGTAADLIKKAMVQVQDALDAAKPEVLMIMQV 873

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P+ D ++  + +  +M         +PL AE
Sbjct: 874 HDELVFELPEGDVDWLRAEVPRIMAGVAE--LKVPLLAE 910


>gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
 gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
          Length = 924

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/666 (16%), Positives = 203/666 (30%), Gaps = 165/666 (24%)

Query: 28  VCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFER 77
             ++  +F            +HD       +P+      LK  LEN     +  +  ++R
Sbjct: 360 AEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEVLAKLKGWLENPAKKKLGQHVKYDR 419

Query: 78  TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
            V     N  I +  +   T++ +    +         A +   +K    ++L  +  K 
Sbjct: 420 HV---FANHGIEVQGYVHDTMLQSYVLEVHKPHGLASLAERHLGRKGINYEDLCGKGAKQ 476

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL-------WYLD 189
                      P  + +     EY   D   T ++ + L P   K+ +        + L+
Sbjct: 477 ----------IPFSQVSIDKAAEYSCEDSDQTLDVHRTLWPRLEKDAQEGGKLRFIYELE 526

Query: 190 Q-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
                    I   G  +D       +  +     +L+QE   L  G   +    +++   
Sbjct: 527 IASSETLYRIERNGVLIDAPTLAQQSHELGQRILQLEQEAYELA-GQPFNLGSPKQIGEI 585

Query: 243 LFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            F + GL +   T T    T + VL       P   ++  +R                  
Sbjct: 586 FFGKLGLPIVKKTATGAPSTDEEVLEKLADDYPLPAKILEHR------------------ 627

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                        G S+             LP   R H    Q +       ++DP+   
Sbjct: 628 -------------GLSKLKGTYTDKLAQMALPGTGRVHTHYAQAVAVTGRLSSNDPNLQN 674

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         VR   IA  G  +  AD + IE R++A ++G+   L AF  G D++  T 
Sbjct: 675 IPIRTPEGRRVREAFIAPPGCLIASADYSQIELRIMAHLSGDAALLLAFHDGMDVHRATA 734

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F V  + VT +QR   K +   L Y   +     +A + G++     + +      E
Sbjct: 735 SEVFGVPTSAVTSEQRRYAKTINFGLIYGMSSY---GLAKSLGIDNTAAKNYI------E 785

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            + D     +   +     A    ++ T   R     R     ++               
Sbjct: 786 RYFDRFAGVKRYMDETRASAKAKGYVETVFGR-----RLYLPEINS-------------- 826

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                        P+G     R  G  R+ +N            
Sbjct: 827 -----------------------------PNG----PRRGGAERAAINAPM--------- 844

Query: 594 GGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASM 646
                    Q  + D++   M      ++A      +++ VHDE+V E P+ + ++    
Sbjct: 845 ---------QGTAADLIKLSMNAVQRVLDAEGRKTKMIMQVHDELVFEVPENEVDWLKRE 895

Query: 647 LYHLMT 652
           +  LM 
Sbjct: 896 VPKLMA 901


>gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
          Length = 1004

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 112/654 (17%), Positives = 198/654 (30%), Gaps = 144/654 (22%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
              PV+    V + +    LKE LE+  V  V  N  +   V+K      I +  +  T+
Sbjct: 461 GGGPVDSQVPVRETL--SRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTM 515

Query: 98  VLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           +++        A      A +         K++                +          
Sbjct: 516 LMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDV----------TGTGRSSLTFDFVDIDK 565

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHT 206
              Y   D  +   ++  L+P  +           E+ L  +   + +RG  VD  +   
Sbjct: 566 ATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSR 625

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262
           L+  +      L+ E+  L  G   +    ++L   LF + GL     T+T    T  +V
Sbjct: 626 LSGELAQGAAALEDEIYRLA-GETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQV 684

Query: 263 LSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           L            ++ + R                                 ++      
Sbjct: 685 LEDLAAAGHDLPRKIVDWRQL-------------------------------TKLKSTYT 713

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P    P   R H       T      +SDP+   I         +R+  +A+ G KL
Sbjct: 714 DALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKL 773

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + IE RVLA +A      +AF  G D++  T +  F V    +  + R   K + 
Sbjct: 774 VSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAIN 833

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A     +A+   +  +                    + +   E  P      
Sbjct: 834 FGIIYGISAF---GLANQLSIERSEAGD----------------YIKRYFERFP------ 868

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                         R                + +TI   +A     R             
Sbjct: 869 ------------GIRDYMENTKAF--ARENGYVETIFGRRAHYPDIRSSN---------- 904

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                 PS R+       N R+ +N   +         G   + I +A+ +    E  + 
Sbjct: 905 ------PSMRAF------NERASINAPIQ---------GSAADIIRRAMVK---MEPALE 940

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           A K    ++L VHDE++ E  D + E    ++  +M +    A  +  PLK + 
Sbjct: 941 AAKLSARMLLQVHDELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDA 994


>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
 gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
          Length = 949

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/605 (15%), Positives = 182/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N    +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  VT ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  ++++E+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +   +     T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ +      V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   +   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 119/702 (16%), Positives = 221/702 (31%), Gaps = 170/702 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-- 60
           +L ID ET S          ++AE   ++ ++F + D                +  +A  
Sbjct: 382 SLVIDTETTSVQP-------RWAE---IVGYSFCYRDGEAWYLPIRAPENEQALCLDATA 431

Query: 61  --------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110
                   LE+  +  V  N  ++  VL+   +  I +       ++A     P   +  
Sbjct: 432 VADLFRPVLEDPAIAKVGQNIKYDMVVLR---SAGIELRGAAFDTMVADYLIDPGERSHN 488

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A +    +  E + LI     G   + +     P          +Y   D  V   
Sbjct: 489 LDELARRHLGHQNIEIESLI-----GTGKKQIRMDQVP-----LAAITDYAAEDALVPYR 538

Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +   LEP   +          E  L  +   +  RG  VD A    L+     + T L+ 
Sbjct: 539 LLPILEPRLEQDGLVPLFRDLEMPLVEVLAELEHRGIKVDRARLVELSTDFSTKITALEN 598

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277
           E+ ++ +G   +     +L   LF +  L +   T+T       VL    +L     +V 
Sbjct: 599 EIYAINHG-EFNIDSRLQLAKLLFEDLKLPILKKTKTGPSMDAEVLEDLARLHELPKKVL 657

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R  A                               +              P   R H 
Sbjct: 658 EYRHLA-------------------------------KLRSTYVDSLQELIHPVTGRVHT 686

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
            L Q +       + DP+   I         +RS      EG KL+ AD + IE RVLA 
Sbjct: 687 SLKQDVAATGRLSSQDPNLQNIPVRTAEGRAIRSAFQPGIEGWKLMAADYSQIELRVLAH 746

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G+    +AF +  D++    ++ + VAP  VT + R   K +   + Y         +
Sbjct: 747 FSGDAALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSAKAINFGVIYGQSPF---GL 803

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A + G+  +  A  +    A  ++   ++F R       +      ++ T   R +    
Sbjct: 804 ARSLGIENDEAAAFISAYFA--QYPGVDDFMRETLIGCRKQG----YVTTIAGRRRP--- 854

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                               + +  A+  +++R +P                        
Sbjct: 855 -----------------VTGVRDPHAVNDKRQRTLP------------------------ 873

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625
                R  +NT                  ++Q  + DI+   M+         K    ++
Sbjct: 874 ----ERIAINT------------------VIQGSAADIIKRAMITVHRRLKEEKLQARML 911

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           L +HDE++ E P  ++     ++   M++       +PLK +
Sbjct: 912 LQIHDELLFEFPPEEQGQLRDLVVESMSTAEK--ISVPLKID 951


>gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 931

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/582 (14%), Positives = 173/582 (29%), Gaps = 82/582 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70
           D    G+        ++  +F F +          D      + +  +   EN +   + 
Sbjct: 364 DTETTGLDPNVS--ELVGMSFAFREGEAYYVPVPADFEKAKAIVEQFRPFFENGETEKIG 421

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VLK      I +   +   ++A     P         A      K     EL
Sbjct: 422 QNIKYDIIVLKKY---GIHVRGRLFDTMIAHYLINPELRHNMDYMAETYLKYKTIHIDEL 478

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181
           I           L  R+            +Y   D  +T ++   LE    K        
Sbjct: 479 IG----SRGKNQLNMRSLRP-----DQIKDYACEDADITLKLKAILEKAIEKQDLGKLLY 529

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y+   +   G  +D       ++ + +E   ++ E+         +    +++
Sbjct: 530 DIELPLIYVLADMEYTGVRLDKTALAEYSKTLTLELQGIESEIYK-AAEQEFNINSAKQV 588

Query: 240 KTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +   +     T+T    T +  L S K       ++                  
Sbjct: 589 GEVLFDKLKIVEKPKKTKTGQYVTSEETLESMKDAHSIVGKILE---------------- 632

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                          + G  +         P    P   + H   +Q +T      +S+P
Sbjct: 633 ---------------YRGLKKLLSTYIDALPLLVSPLDDKLHTSYNQTVTATGRLSSSNP 677

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R   IA E      AD + IE R++A ++ +   + AF +GED++
Sbjct: 678 NLQNIPIRDAQGKEIRKAFIADEACIFFSADYSQIELRIMAHLSQDPTMIDAFNSGEDIH 737

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A+ + +  ++VT D R   K     + Y         +A    +       L+   
Sbjct: 738 AATAAKIYKIPISEVTGDMRRKAKTANFGIIYGISVF---GLAERLSIPRGEAKELID-- 792

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                +   + +          +   +   G      K+     +SR + +     +   
Sbjct: 793 GYFATYPKVKEYMDKSISVARTNNYVETVFGR-----KRYLPDINSRNTTVRGYAERNAI 847

Query: 530 QT-IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              I+   A I +   +      +++     ++L     L +
Sbjct: 848 NAPIQGSAADIIKVAMNRIFDRFERENIKSKMILQVHDELNF 889


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 113/648 (17%), Positives = 213/648 (32%), Gaps = 139/648 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + L+  LE      V  N  F+R VL+      I +   +   +LA     P     L +
Sbjct: 445 EALRPILERDRYPKVLQNVKFDRLVLRTQ---GIKLAGVVMDTMLASYVLNPDNSHNLNS 501

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E       +++  K+L  +  KG+T   L  +   N          YC   V  T ++
Sbjct: 502 LTERY-FPQIQLKSYKDL--KIPKGKTIAELSSKTVAN----------YCGMQVYATFKL 548

Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +L             L   EQ L  +   +  +G  +D A    L++ ++ +   ++Q
Sbjct: 549 VPKLREKLEAIPAIEKLLLEVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQ 608

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
                  G   +    ++L   LF +  L      +                        
Sbjct: 609 NAYKQA-GEEFNLGSPKQLSELLFEKLNLDRRKSRK------------------------ 643

Query: 281 MRASRSAVLKLNTLVEAMNSDGR-LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               ++     +  +E +  D   +   L+    S+         P        R H + 
Sbjct: 644 ---MKTGYSTDHATLEKLQGDHPVIDTILEHRTLSKLKSTYVDALPKLVHKDTQRIHTDF 700

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q IT      +S+P+   I      S  +R   +   G  LV AD + IE R+LA ++ 
Sbjct: 701 NQTITSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLLVSADYSQIELRILAHLSQ 760

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E   ++ +   +D++  T    F      VT ++R +GK +   + Y  G    Q+ A  
Sbjct: 761 EPVLVETYRNNQDIHAVTAKLLF--EKETVTPEERRLGKTINFGVIYGMGP---QRFARE 815

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +                                     +R+K+ + +  
Sbjct: 816 AGVSAAEGKEFI-------------------------------------DRLKQRYPK-- 836

Query: 515 SRVSELWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                ++  L Q     I  G  + I+ R+R      Y + + N     L   +    ++
Sbjct: 837 -----VFGYLEQMKGDAIAKGYVETILGRRR------YFEFNSN----RLRDAKGKNPQE 881

Query: 573 VGNNRS-YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLT 627
           +  +    +      L R            +Q  S DI+   M+   +        ++L 
Sbjct: 882 IDLDEFKGIGQYDSGLLRAAANAP------IQGSSADIIKIAMVKMHEVLQDYQARLLLQ 935

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           VHDE+V E P  + E     +   M S       +PL  +  E + + 
Sbjct: 936 VHDELVFEVPPDEWEELQPKIRETMESAVE--LTVPLVVDVSEGENWM 981


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 942

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/637 (17%), Positives = 210/637 (32%), Gaps = 103/637 (16%)

Query: 2   ATLFIDFETRSPIDL----------TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP 51
             + ID ET S   +           + G+  Y         AF      +         
Sbjct: 365 KPISIDTETTSQDPMMAELLGISFSEEPGVAYY--------IAFSH-SESIYSHLLPSAE 415

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--AL 109
              ++LK  LE+++   +  N  ++  VLK   N  I +       +LA     P     
Sbjct: 416 ESLKILKPMLEDSNWKKIGQNIKYDLLVLK---NYGIELKGIYFDTMLASYLLNPGERRH 472

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                A+   + K    +EL+     G+  + LYD       +      EY   D  +T 
Sbjct: 473 NMDDMAVDYLNYKTITYEELVG---TGKKKQNLYD----IDPDK---VSEYACEDADITL 522

Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           ++   L P              E  +      +   G  VD +   +L+   D +  + +
Sbjct: 523 QLHNVLSPKMDENIHKKLFYEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIKEHE 582

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQV 276
           + +     G   +    ++L+T LF +  L  E  T+T       VL S +   P    +
Sbjct: 583 KNIHFYA-GRQFNVNSTKELQTVLFEDLRLPAEKKTQTGYSTDHSVLESLQGTHPIIDDL 641

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + R                                 S+         P    P+  R H
Sbjct: 642 LSIR-------------------------------KFSKLKSTYTDTLPLLVNPKTKRIH 670

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
              +Q I       +++P+   I         +R   IA +G +++  D + IE R++A 
Sbjct: 671 TSYNQTIAATGRLSSTNPNLQNIPIKDEEGRLLRKGFIAKKGYEILSLDYSQIELRIMAH 730

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            + +   + A+ +G D++  T A  F V   QVT D R   KV+  ++ Y   +     +
Sbjct: 731 FSNDPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIYGVTSF---GL 787

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           ++   ++       +      E++  A        E   E   ++ ++ T   R ++   
Sbjct: 788 SNNLRISRKEAKEFI------EKYFAAYKGVATYMEEIVEFCKQNGYVETLLGR-RRYLP 840

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
             HS    +     +    +   G +    K   + +    K ++    L+L     LV+
Sbjct: 841 DIHSSHKMVSEGAKRVAINSPIQGTSADMIKIAMIQIHEKIKKESFRSKLLLQVHDELVF 900

Query: 571 -RDVGNNRSYLNTTTRQLTREYTYGG-KL-TENIVQA 604
             D    + +      Q+ +E      KL    +VQ 
Sbjct: 901 EVDPKEKKEFF-----QMAKEEMESAMKLKVPIVVQG 932


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 110/642 (17%), Positives = 194/642 (30%), Gaps = 156/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
           LK  LE+  V  +A N  ++  V++      I    +  T++++             P +
Sbjct: 450 LKIVLEDASVLKIAQNMKYDWLVMRRH---GINTVSFDDTMLISYVLDAGTGSHGMDPLS 506

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            + +G            GK  ++                            Y   D  VT
Sbjct: 507 ERWLGHTPIPYKDVAGSGKSAVS-----------------FDMVDLDRATAYAAEDADVT 549

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++ L+P  + E          + L  +   + +RG  VD  +   L+  +       
Sbjct: 550 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSGDLAQAAAAY 609

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+  L  G   +    ++L   LF +  L     T+T    T  +VL        P  
Sbjct: 610 EDEIYELA-GERFNIGSPKQLGDILFGKMSLSGASKTKTGQWSTSAQVLEDLAAEGHPLP 668

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P   
Sbjct: 669 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPETK 697

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +SDP+   I         +R+  IA  G KLV AD + IE RV
Sbjct: 698 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRV 757

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 758 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 815

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +        ++T      + +     +   E     A               
Sbjct: 816 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 854

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                              + +TI   +A     R                   P  R+ 
Sbjct: 855 ----------------ENGYVETIFGRRAHYPDIRASN----------------PQVRAF 882

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                 N R+ +N   +         G   + I +A+ R    E  +        ++L V
Sbjct: 883 ------NERAAINAPIQ---------GSAADIIRRAMIR---MEDALAEQNLAARMLLQV 924

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
           HDE++ E PD + E    ++ H+M +    A  L  PL  + 
Sbjct: 925 HDELIFEVPDNEVEKTIPVVRHIMENAAMPAVSLAVPLHVDA 966


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/643 (14%), Positives = 180/643 (27%), Gaps = 156/643 (24%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D      MP     ++LK  LE+  +  +  N  ++  +        I +     T++L+
Sbjct: 398 DLAEG-QMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFAR---NGIDVTPIDDTMLLS 453

Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +G          + +    +    K L+            +DR       +      
Sbjct: 454 YALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSG----KSAITFDR------VSIEDATP 503

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++++ +P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 504 YAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQHGIKVDRDTLSRMSN 563

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L  G   +    ++L   LF +  L      +T    T   +L  
Sbjct: 564 AFSQKMAALEAEIHELA-GETFNVGSPKQLGEILFDKMSLPGGKKGKTGAYATGADILED 622

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R                                 S+          
Sbjct: 623 LATEHTLPARVLDWRQL-------------------------------SKLKSTYTDALQ 651

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
               P   R H    Q   +     +SDP+   I         +R   +A EG  L+  D
Sbjct: 652 EHIHPETGRVHTSYLQTGANTGRLASSDPNLQNIPVRSEEGRRIREAFVADEGNVLLSLD 711

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +AG     +AF  G D++  T +  F+V   ++T D R   K +   + 
Sbjct: 712 YSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAINFGVI 771

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +A    +        +                                  
Sbjct: 772 YGISGF---GLARNLRIPRGEAQGFID--------------------------------- 795

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                      +   R   +   +        E+G       R+               +
Sbjct: 796 -----------RYFERFPGIRQYMDDTVNFAKEHGYVQTLFGRK---------------I 829

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616
             P   +   R     R+ +N                    +Q  + D++   M+     
Sbjct: 830 HTPEIAAKGPRASFAKRAAINAP------------------IQGTAADVIRRAMVRMPEA 871

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658
                  ++L VHDE++ E P+   E   S+   +M      A
Sbjct: 872 IAHLPARMLLQVHDELLFEVPEDHVEETISVAREIMEGAADPA 914


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 116/683 (16%), Positives = 212/683 (31%), Gaps = 165/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQ 399

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 ILVQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+P    E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +      +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    ++++N+ +   + +P                     +  
Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT-DEFNASMLYHLMT 652
           E+V E      E  +  +  +M 
Sbjct: 878 ELVFEADQNIAEELSKQIATVME 900


>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
 gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
          Length = 881

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 108/624 (17%), Positives = 192/624 (30%), Gaps = 126/624 (20%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE +       +  ++R +        I +       +L         + +     
Sbjct: 333 LKPLLEASAPPKSGQHHKYDRHIFARA---GIELRGIKDDTMLMSY-----TIDSTATRH 384

Query: 117 KLSS-------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            L          +    +++  +  K  T + +                 Y   D  +T 
Sbjct: 385 NLDDLADYYLNHQTTTFEDIAGKGAKQLTFDQI----------PLETATAYACEDADITL 434

Query: 170 EIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            +   L P  +            E  L  L   I   G  +D A     +  +  +   L
Sbjct: 435 RLKNHLAPKLAAVPQLDALYRELEMPLAELLYKIEATGVRIDPAALAAQSAEISGQLAAL 494

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAI 274
           +    +L  G   +    ++L+  L+ + GL +         +T + VL+   +     +
Sbjct: 495 EHAAHTLA-GSPFNLGSPKQLQEILYDQLGLPVLRKTPKGQPSTNEEVLAELAESHGAEL 553

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                                         R  L+  G ++         P    P   R
Sbjct: 554 P-----------------------------RLILEHRGLAKLKTTYTDRLPELINPHTGR 584

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q +T      +SDP+   I         +R   IA +G +++ AD + IE R++
Sbjct: 585 IHTSYHQAVTSTGRLSSSDPNLQNIPVRSEAGRRIRRAFIAEDGWQILAADYSQIELRIM 644

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ +   L AF  G+D++  T A  F VAP  V+++QR   K +   L Y   A    
Sbjct: 645 AHLSADPGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGMSAF--- 701

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A    +     A  + T  A           R   +   E A +  ++ T   R +  
Sbjct: 702 GLARQLNIPRGQAADYIDTYFARYPK------VRDYMDATREAAHKQGYVETLLGR-RLY 754

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
               +S+  +      +        G A    KR  + +     D+   +  LP      
Sbjct: 755 LPDINSKNPQRRQASERLAINAPMQGSAADIIKRAMLAI-----DRELELSPLPG----- 804

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                   +     T  L RE T           A +RD L             +++ VH
Sbjct: 805 --------AGGTHNTNPLPREATA----------AKNRDDL------------RLIMQVH 834

Query: 630 DEIVCET-PDTDEFNASMLYHLMT 652
           DE+V E  P         +  LM 
Sbjct: 835 DELVFEIRPQAAAELTPRIVALME 858


>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
 gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
          Length = 936

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 102/658 (15%), Positives = 178/658 (27%), Gaps = 160/658 (24%)

Query: 46  DCVHDP-----VMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D           MP       LK+ LE+  V  +  N  ++  +L        PI   + 
Sbjct: 393 DLFGGEGLSEGQMPLEEAVAMLKDVLEDPAVLKIGQNMKYDAKILHRYGVDVAPIDDTML 452

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            +  A   GL         + +         K L+       T            R    
Sbjct: 453 -MSYALHAGL-HGHGMDTLSERYLDHTPIPIKPLLGSGKSAVT----------FDRVPIE 500

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205
               Y   D  +T  +++  +P   +E+           L  +   +   G  VD     
Sbjct: 501 DAVPYAAEDADITLRLWQTFKPQLHQERVTTVYETLERPLVPVLAEMERNGIKVDRDTLS 560

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQR 261
            ++     +   L+ E+  L  G   +     +L   LF + GL      +    +T   
Sbjct: 561 RMSNAFAQKMAGLEAEIHELA-GETFNVGSPAQLGEILFDKMGLEGGKRGKNGKYSTGAD 619

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           +L           +V + R                                 S+      
Sbjct: 620 ILEDLATEHDLPRRVLDWRQL-------------------------------SKLKSTYT 648

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
                       R H    Q         ++DP+   I         +R   +A EG  L
Sbjct: 649 DALQDHINKDTGRVHTSYAQTGASTGRMASTDPNLQNIPVRSEEGRRIREAFVAEEGNVL 708

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE R+LA MAG +   +AF  G+D++  T +  F V   ++T + R   K + 
Sbjct: 709 LSLDYSQIELRILAHMAGIETLQQAFAEGQDIHALTASEMFGVPLEEMTPEIRRQAKAIN 768

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y        +                         +DA+ F     E  P      
Sbjct: 769 FGVIYGISGFGLARNLRI-------------------PRKDAQGFIDRYFERFP------ 803

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                         R+      E        + QT+   K   A      P     K   
Sbjct: 804 ------------GIRKYMDSTVEF--AKEHGYVQTLFGRKIHTAEINAKGPKAGFAK--- 846

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R+ +N                    +Q  + D++   M+ 
Sbjct: 847 --------------------RAAINAP------------------IQGTAADVIRRAMIR 868

Query: 617 ----ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
                      ++L VHDE++ E P+   E   +    +M +    A    + L  + 
Sbjct: 869 MPEAIAHLPARMLLQVHDELLFEVPEAAVEDTIAAAREVMENAADPAVHLDVKLVVDA 926


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/634 (17%), Positives = 191/634 (30%), Gaps = 154/634 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+     V  +  ++  V     N DI +      T++ +              A ++ 
Sbjct: 419 LEDESRKKVGQHLKYDAHV---FANHDIALRGIEHDTMLESYVLESHRNHGMDALAERVL 475

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
             K    + +    C     +  +D              EY   D  VT  + + L P  
Sbjct: 476 HLKTITYEAV----CGKGASQIGFD------EVPLDRATEYAAEDADVTLRLHRTLFPKV 525

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     + Q +   G  +D       +  + +    L+ E   L  G
Sbjct: 526 AEDDKLRYVYEQIEMPASIVLQKMERNGVLIDADRLAKQSNELGLRLIDLEAEAHKLA-G 584

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F +  L +   T     +T + VL    +  P    +        
Sbjct: 585 QPFNLSSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 637

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    + G ++         P    PR  R H    Q   
Sbjct: 638 ------------------------DYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATA 673

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   IA EG  +V AD + IE R++A ++ ++  +
Sbjct: 674 VTGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLM 733

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  FNV P +VT DQR + KV+   L Y   A     +AS  G+  
Sbjct: 734 RAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAF---GLASNLGIGR 790

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +                                              K    +  +R   
Sbjct: 791 DAA--------------------------------------------KLYIDRYFARYPG 806

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             + + +  ++  E G       RR               L LP            + + 
Sbjct: 807 AASYMDETRQRAREQGYVETVFGRR---------------LWLP------------DING 839

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIV 633
            N   RQ               +Q  + D++   M+      +A      +V+ VHDE+V
Sbjct: 840 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQGWLDAEAMRSRLVMQVHDELV 894

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P  +       L  LM S  +    +PL AE
Sbjct: 895 LEVPQDELAVVRERLPELMCSVAT--LRVPLVAE 926


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 180/551 (32%), Gaps = 119/551 (21%)

Query: 136 GETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------E 184
                    RNK    R A      Y   D  VT  +++ ++P    E+           
Sbjct: 25  PCGDVAGTGRNKVTFERVAIDKATAYAAEDADVTLRLWRMMKPRLVAERRVTVYETLERP 84

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  +D  +   L+        +L++E++    G        +++   LF
Sbjct: 85  LVPVLARMERAGIRIDRNMLSRLSGDFSQILARLEEEIQEDA-GEKFQVSSPKQIGDVLF 143

Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            + GL     T +      ++  +   QA      +                        
Sbjct: 144 GKLGLPGAKKTPSGQWATPATLLEELAQAGHELPKK------------------------ 179

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
              L +   ++                 +R H       T      +S+P+   I     
Sbjct: 180 --ILNWRQLAKLKSTYTDSLQEHADRETNRVHTSFSLAATTTGRLSSSEPNLQNIPIRTE 237

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R   +A EGKKL+ AD + IE R+LA +A      +AFE G D++  T +  F V
Sbjct: 238 EGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGV 297

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              Q+T D R   K +   + Y   A     +A   G+     +  +K     E +    
Sbjct: 298 PLDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGREEASAFIK--QYFERFPGIR 352

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
           ++                      +  KK+ R+K   V+ L+  +               
Sbjct: 353 DYI---------------------DTTKKSCREK-GYVTTLFGRVCH------------- 377

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                     Y +   NN     PS R+ V       R  +N   +         G   +
Sbjct: 378 ----------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAAD 407

Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658
            I +A++R    E  + A +    ++L VHDE+V E PD + E    ++  +M   P+ A
Sbjct: 408 IIRRAMTR---MEAALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAEVMEQAPAPA 464

Query: 659 KGL--PLKAEG 667
             L  PL  E 
Sbjct: 465 LTLSVPLVVEA 475


>gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 921

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 101/579 (17%), Positives = 181/579 (31%), Gaps = 81/579 (13%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           E+  +  K  T + +          A    G+Y   +  +T  + +  E           
Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T   R +      +++   L     +     
Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              G A    K+  V +    ++   +  ++L     LV
Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878


>gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 921

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 100/570 (17%), Positives = 176/570 (30%), Gaps = 81/570 (14%)

Query: 34  AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +F    H        H             + + LK  LE+ D T V  ++ F   +L  C
Sbjct: 356 SFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC 415

Query: 84  F-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                    I +       +L     +   +         K  +      +E+  +  K 
Sbjct: 416 ALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAKQ 475

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQEL 185
            T + +          A    G Y   +  +T  + +  E            L+  E  L
Sbjct: 476 LTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPL 525

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   I  +G  VD  L    +  +  + T L++E  ++  G   +    ++L   L+ 
Sbjct: 526 VPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSPKQLGVILYE 584

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           + G+ +   T T       +      +        +                        
Sbjct: 585 KLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL------------------------ 620

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
             +Q+   S+         P Q  PR  R H    Q +       +SDP+   I      
Sbjct: 621 --MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAE 678

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  T A  F V 
Sbjct: 679 GRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVE 738

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT D R   K +   L Y   A     +A   G++       V    A         
Sbjct: 739 LENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFARYP------ 789

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                 E     A E  F+ T   R +      +++   L     +        G A   
Sbjct: 790 GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINAPMQGTAADI 848

Query: 541 RKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
            K+  V +    ++   +  ++L     LV
Sbjct: 849 IKKAMVAVNGWLEESGLDARVILQVHDELV 878


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 114/690 (16%), Positives = 202/690 (29%), Gaps = 166/690 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64
           D     +  +A    ++  +              H        +P+      LK  LE+ 
Sbjct: 334 DTETTSLDSFA--ARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVLARLKSWLESA 391

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKM 123
               V  N+ +++ V     N  I +      T++ +                +      
Sbjct: 392 AHKKVLQNAKYDQHV---FANHGIALSGIAHDTMLQSYVIESDKGHDLGQLCTRHLGLAT 448

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              ++L  +  K  T + +                 Y   D  VT  +   L P  + E 
Sbjct: 449 IAYEDLCGKGAKQITFDQV----------DIERAATYAAEDSDVTLRVHNVLHPQFASEP 498

Query: 184 ELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            L  +   I              G  +D  +    +  +  +   L+ +   L  G   +
Sbjct: 499 GLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQKIMALEAQAYELA-GQPFN 557

Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               ++L   LF + GL ++  T +    T + VLS      P    +  +R        
Sbjct: 558 LASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYPLPKLLLEHRSL------ 611

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                    S+         P    P+  R H    Q       
Sbjct: 612 -------------------------SKLKGTYTDKLPRMVNPQTGRVHTHFSQAAVVTGR 646

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +SDP+   I         +R+  IA  G  +V AD + IE R++A ++G++  L AF 
Sbjct: 647 LASSDPNLQNIPVRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFA 706

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++  T    F V P +V  DQR + K +   L Y   A     +A   GL  +   
Sbjct: 707 HGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINFGLIYGMSAF---GLARQLGLERSAAQ 763

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                           +  +R   +   
Sbjct: 764 --------------------------------------------TYIDRYFARYPGVARY 779

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           + +A E   ++G                        +    GR L + D+ ++    N  
Sbjct: 780 MEEARESARQHG-----------------------YVETAFGRRLWFPDIRSS----NGN 812

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP 637
            RQ               +Q  + D++   M+              ++L VHDE++ E P
Sbjct: 813 RRQGAERAA-----INAPMQGTAADLIKLAMIAVQNWLEKSALKSRLILQVHDELLLEVP 867

Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           D +  +  + L  LM         +PL  E
Sbjct: 868 DGELMDVRTHLPRLMGQVAE--LKVPLVVE 895


>gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
          Length = 948

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 120/638 (18%), Positives = 194/638 (30%), Gaps = 156/638 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEA 115
           L+  LE+     + H++ ++  V     N  I +      T++ A        +     A
Sbjct: 428 LRPWLEDASRAKLLHHAKYDTHV---FANEGIRLAGIAEDTMLQAYVLESHRGVGLNDLA 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +   +     ++L  +  K                 A    G Y   D   T ++ + L
Sbjct: 485 QRYLGRSGVSYEDLCGKGAKQ----------IGFDEVAVDKAGHYAAEDADFTLQLHQVL 534

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P  +           E ++  +  TI   G  VD A     +  +  E  +L+Q+   L
Sbjct: 535 RPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHKLGQEMLQLEQKAYEL 594

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L   LF    L +   T     +T + VLS   +  P    +     
Sbjct: 595 A-GQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLLE--- 650

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                       + G S+         P    P   R H    Q
Sbjct: 651 ----------------------------YRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQ 682

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    +SDP+   I         VR   IA +G  L+ AD + IE R++A ++ + 
Sbjct: 683 AAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-LLLSADYSQIELRIMAHVSDDA 741

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF  GED++  T +  F VA A V+ +QR   K +   L Y  G      +AS  G
Sbjct: 742 NLQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAINFGLIYGMGVF---GLASNLG 798

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +    A               EN    A E  ++ T   R           
Sbjct: 799 ITRDAAQAYIDRYFARYP------GVAMYMENTRRVAREQGYVETVFGR----------- 841

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGN 575
                                                      L LP  R     R  G 
Sbjct: 842 ------------------------------------------RLQLPEIRGASGPRRQGA 859

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVH 629
            R+ +N                     Q  + D++   M      + A K    +++ VH
Sbjct: 860 ERAAINAPM------------------QGTAADLIKMAMVAVQDWLEAEKLQTRMIMQVH 901

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E PD + E     L  LM +       +PL AE
Sbjct: 902 DELVLEAPDAELELVKQTLPRLMCNVAE--LRVPLVAE 937


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 110/650 (16%), Positives = 198/650 (30%), Gaps = 170/650 (26%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108
            LK  LE+  +  VA N  ++  ++K      I    +  T++++             P +
Sbjct: 488  LKALLEDESILKVAQNLKYDYLLMKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 544

Query: 109  LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             K +G            GK                  N             Y   D  VT
Sbjct: 545  EKFLGHTPIPYKDVAGSGKA-----------------NVTFDLVDIDRATHYAAEDADVT 587

Query: 169  REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
              ++  L+P  +           E+ L  +   +  RG  VD  +   L+  +     +L
Sbjct: 588  LRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARL 647

Query: 219  DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
            + E+  L  G   +    ++L   LF + GL     T+T    T  +VL           
Sbjct: 648  EDEIYVLA-GERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTSAQVLEDLAAAGFELP 706

Query: 274  IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             ++ + R                                 ++         P    P   
Sbjct: 707  RKIVDWRQ-------------------------------VTKLKSTYTDALPGYVHPETK 735

Query: 334  RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
            R H       T      +S+P+   I         +R+  I++ G KL+ AD + IE RV
Sbjct: 736  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795

Query: 389  LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            LA +A      KAFE G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 796  LAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF-- 853

Query: 449  QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
              +A+   +  +     +K      ++ +     R   E+    A +  ++ T       
Sbjct: 854  -GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG---- 902

Query: 509  AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                                             +R + P +             PS R+ 
Sbjct: 903  ---------------------------------RRINYPEIRSSN---------PSVRAF 920

Query: 569  VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------ 622
                  N R+ +N                    +Q  + D++   M+    A        
Sbjct: 921  ------NERAAINAP------------------IQGSAADVIRRAMIKIEPALVEVGLAD 956

Query: 623  --DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
               ++L VHDE++ E  D D E    ++  +M +    A  +  PL+ + 
Sbjct: 957  RVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVDA 1006


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/605 (15%), Positives = 184/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         +      +    
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N  + +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLE---NYGVQVKGALFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  VT ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----IYRYACEDADVTLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  +++QE+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +  +      T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   E   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPSVKAYMEKSIQIAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/649 (17%), Positives = 200/649 (30%), Gaps = 157/649 (24%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL 109
             +P+ LK  LE+  V  VA N  ++  +LK      I    +  T++++        A 
Sbjct: 199 DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAH 254

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                + K         K++                N             Y   D  VT 
Sbjct: 255 GMDPLSEKFLGHTPIPYKDVA----------GSGRANVTFDLVDIDRATHYAAEDADVTL 304

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            ++  L+P  +           E+ L  +   +  RG  VD  +   L+  +     +L+
Sbjct: 305 RLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLE 364

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274
            E+ +L  G   +    ++L   LF + GL     T+T    T   VL            
Sbjct: 365 DEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 423

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++ + R                                 ++         P    P   R
Sbjct: 424 KIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETKR 452

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H       T      +S+P+   I         +R+  I++ G KL+ AD + IE RVL
Sbjct: 453 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 512

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A      KAFE G D++  T +  F V    +  + R   K +   + Y   A    
Sbjct: 513 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF--- 569

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A+   +  +     +K      ++ +     R   E+    A +  ++ T        
Sbjct: 570 GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG----- 618

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                           +R + P +             PS R+  
Sbjct: 619 --------------------------------RRINYPEIRSSN---------PSVRAF- 636

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------- 622
                N R+ +N                    +Q  + D++   M+    A         
Sbjct: 637 -----NERAAINAP------------------IQGSAADVIRRAMIKIEPALAEAGLAER 673

Query: 623 -DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             ++L VHDE++ E  D D +    ++  +M +    A  +  PLK + 
Sbjct: 674 VRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDA 722


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 119/699 (17%), Positives = 216/699 (30%), Gaps = 175/699 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---- 60
           ID ET S  +L             ++  +F  +          H  P  P  L  A    
Sbjct: 349 IDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVLA 398

Query: 61  -----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
                LE+     +  +  ++R V     N  I +  +   T++ +    +         
Sbjct: 399 RLKPWLEDPKHPKLGQHVKYDRHV---FANHGIEVRGYVHDTMLQSYVLEVHKPHGLASL 455

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A + + +     ++L  +  K            P  +        Y   D   T ++ + 
Sbjct: 456 AERHTGRTGISYEDLCGKGAKQ----------IPFSQVPVDKAAAYSCEDSDQTLDVHRV 505

Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L P    +++L   + L+         I   G  +D       +  +     +L+QE   
Sbjct: 506 LWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQEAYD 565

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +  G   +    ++L    F + G+ +   T T    T + VL    +  P   ++  +R
Sbjct: 566 IA-GQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 624

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                     +L  L  + T + +         PR  R H    
Sbjct: 625 --------------------------SLSKLKGTYTDKLAQLA-----DPRTGRVHTHYA 653

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       ++DP+   I         VR   +A  G+ +   D + IE R++A ++G+
Sbjct: 654 QAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF  G D++  T A  F VA  QVT +QR   KV+   L Y   +     +A   
Sbjct: 714 EALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSY---GLAKNL 770

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++     + +                                             +   
Sbjct: 771 GIDNTAAKNYID--------------------------------------------RYFQ 786

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVG 574
           R   +W  +     Q    G       RR               L LP   S    R   
Sbjct: 787 RYPGVWQYMQDTKAQAKARGYVETVFGRR---------------LYLPEINSPNGPRRSA 831

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628
             R+ +N                     Q  + D++ + M+    A         +++ V
Sbjct: 832 AERAAINAPM------------------QGTAADLIKKAMVQVQDALDAAKPEVLMIMQV 873

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P+ D  +  + +  +M         +PL AE
Sbjct: 874 HDELVFELPEGDVNWLRAEVPRIMAGVAE--LKVPLLAE 910


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 104/624 (16%), Positives = 191/624 (30%), Gaps = 145/624 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+        N+ ++R +L       + +   +   +LA      +A            
Sbjct: 464 LESARHPKTLQNAKYDRLIL---LRHGLSLEGVVMDTLLADYLRDANA-----------K 509

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT-----------R 169
             +E   E    F    +   L  + +            YC  DV VT           +
Sbjct: 510 HGLEVLAERNFGF-TPTSFSELVAKGETFAAVPIAAAARYCAMDVHVTWRLTPLLRGQLQ 568

Query: 170 EIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           ++ + L  L  + E  L  +   +   G  +D     TL++ +      L+        G
Sbjct: 569 QLGEALPKLLDQVELPLEPVLARMEATGIRIDKPYLATLSEELAGTLASLEAGARE-AAG 627

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +  +    ++L   LF   GL  +   +T     T   VL       P    V  +R   
Sbjct: 628 VEFNLASPKQLGELLFETLGLERKKSRKTKTGWSTDAAVLEKLAGDHPVVPLVLEHR--- 684

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                         S+         P    P   R H + +Q +
Sbjct: 685 ----------------------------TLSKLKSTYVDALPALVEPETGRVHTDFNQAV 716

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +S+P+   I      S  +R   +  EG +L+ AD + IE R+L  ++GE+  
Sbjct: 717 TATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWQLISADYSQIELRILTHLSGEEVL 776

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A+  G+D++  T      +   +VT D+R +GK +   + Y  GA   Q+ A  TG++
Sbjct: 777 VEAYANGDDVHALTARLL--LDKDEVTADERRLGKTINFGVIYGMGA---QRFARETGVS 831

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +     +  +   + +     F     E     A+   ++ T   R +           
Sbjct: 832 QSQAKEFL--SKYKQRYPKVFAFL----ELQERLALSRGYVETILGRRRP---------- 875

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                              D   L  +               + 
Sbjct: 876 --------------------------------FAFDPGGLGRLR-------------GKP 890

Query: 579 YLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629
                     R      +L       +Q  S DI+   M+   +          ++L VH
Sbjct: 891 PEEIELEVARRAGMEAQQLRAAANAPIQGSSADIIKLAMVQLDQQLRASGLPARLLLQVH 950

Query: 630 DEIVCE-TPDTDEFNASMLYHLMT 652
           DE+V E  P+  E   + +  +M 
Sbjct: 951 DELVLEAAPEALEPVLAAVKQVME 974


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 113/656 (17%), Positives = 201/656 (30%), Gaps = 171/656 (26%)

Query: 51   PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------ 104
              +P+ LK  LE+  V  VA N  ++  +LK      I    +  T++++          
Sbjct: 483  DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAH 538

Query: 105  --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
               P + K +G            GK                  N             Y  
Sbjct: 539  GMDPLSEKFLGHTPIPYKDVAGSGKA-----------------NVTFDLVDIDRATHYAA 581

Query: 163  GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             D  VT  ++  L+P  +           E+ L  +   +  RG  VD  +   L+  + 
Sbjct: 582  EDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 641

Query: 213  VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
                +L+ E+  L  G   +    ++L   LF + GL     T+T    T  +VL     
Sbjct: 642  QGAARLEDEIYVLA-GERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTSAQVLEDLAA 700

Query: 269  L-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   ++ + R                                 ++         P  
Sbjct: 701  AGFELPRKIVDWRQ-------------------------------VTKLKSTYTDALPGY 729

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
              P   R H       T      +S+P+   I         +R+  I++ G KL+ AD +
Sbjct: 730  VHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 789

Query: 383  GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
             IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   + Y 
Sbjct: 790  QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG 849

Query: 443  GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
              A     +A+   +  +     +K      ++ +     R   E+    A +  ++ T 
Sbjct: 850  ISAF---GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETI 900

Query: 503  CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                                   +R + P +             
Sbjct: 901  FG-------------------------------------RRINYPEIRSSN--------- 914

Query: 563  PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
            PS R+       N R+ +N                    +Q  + D++   M+    A  
Sbjct: 915  PSVRAF------NERAAINAP------------------IQGSAADVIRRAMIKIEPALV 950

Query: 623  --------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
                     ++L VHDE++ E  D D E    ++  +M +    A  +  PL+ + 
Sbjct: 951  EVGLADRVRMLLQVHDELIFEVEDQDVEKAMPVIVSVMENATMPALEMRVPLRVDA 1006


>gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/605 (15%), Positives = 184/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         +      +    
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N  + +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLE---NYGVQVKGALFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  VT ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----IYRYACEDADVTLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  +++QE+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +  +      T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   E   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPSVKAYMEKSIQIAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
 gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
          Length = 935

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/653 (16%), Positives = 189/653 (28%), Gaps = 156/653 (23%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D      MP      +LK  LE+  V  +  N  ++  +         PI   +  +  A
Sbjct: 398 DLAEG-QMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARYGVRIAPIDDTML-MSYA 455

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
            + GL         + +  S      KEL+    K +T + +                +Y
Sbjct: 456 MNAGL-HGHGMDALSERYLSHTPIPIKELLGSGKKMKTFDQV----------PIEDAVKY 504

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++  L+P   +          E+ L  +   +   G  VD      ++  
Sbjct: 505 AAEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAGVQVDRDTLSRMSNA 564

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+  L  G   +    ++L   LF + GL      +T    T   VL   
Sbjct: 565 FSQKMAALEAEIHELA-GESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLEDL 623

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   +V + R                                 S+           
Sbjct: 624 ATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQE 652

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
                  R H        +     ++DP+   I         +R   +A EGK +V  D 
Sbjct: 653 HINKDTGRVHTSYVISGANTGRLSSTDPNLQNIPVRSEEGRRIREAFVAPEGKTIVALDY 712

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA MA      +AF  G+D++  T +  FNV   ++T + R   K +   + Y
Sbjct: 713 SQIELRILAHMAEIDALKQAFRDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAINFGVIY 772

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                    +A    +  +     +        + +     R   ++    A E      
Sbjct: 773 GISGF---GLARNLRIPRSEAQGFID------RYFERFPGIRTYMDDTVAFAKE------ 817

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                       H RV  L+  +    E   +  +A  A+                    
Sbjct: 818 ------------HKRVETLFGRVIHTPEIAAKGPRAGFAK-------------------- 845

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617
                          R+ +N                    +Q  + DI+   M+      
Sbjct: 846 ---------------RAAINAP------------------IQGTAADIIRRAMIRMPDAI 872

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM--TSNPSWAKGLPLKAEG 667
            K    ++L VHDE++ E     E         +M   + P     +PL  + 
Sbjct: 873 EKLPATMLLQVHDELIFEVEQGAEEALISAARTVMEGAAEPVVKLDVPLVVDA 925


>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
 gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
          Length = 931

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 109/647 (16%), Positives = 201/647 (31%), Gaps = 122/647 (18%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56
           D ET S   +             ++  +F   +         HD       + +      
Sbjct: 357 DTETTSLNYIQ----------AELVGLSFAVAEGEAAYLPVAHDYIDAPEQLDRDHVLAS 406

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110
           LK  LE+++   V  N  ++++VL            D  I  ++   +  R +    A K
Sbjct: 407 LKTLLEDSNAKKVGQNLKYDKSVLANYGINLAGIAYDTMIESYVYNSIATRHDMDSLADK 466

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +G        K    +E+  +  K  T   +                 Y   D  VT  
Sbjct: 467 YLG-------HKTISFEEIAGKGKKQLTFNQI----------ELEQASAYAAEDADVTLR 509

Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +   L P            +  E  L  +  ++  +G  +D +     +  +     +L+
Sbjct: 510 LHNVLWPKIEAEPSLVALFNEVELPLVSILSSVERQGVLIDKSKLDAQSVELGARMLELE 569

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275
            +   +      +    ++L+  LF++  L +   T      T + VL       P    
Sbjct: 570 AKAHEIA-EQPFNLSSPKQLQEILFVKMELPVIKKTPKGAASTAEDVLQELALNYPLPKI 628

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R                                 S+         P     +  R 
Sbjct: 629 ILEYRSL-------------------------------SKLKSTYTDKLPTLIEEKTGRV 657

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H    Q +T      +SDP+   I         +R   I   G K V  D + IE R++A
Sbjct: 658 HTSYHQAVTATGRLSSSDPNLQNIPVRAGEGRRIRQAFIPETGYKYVAVDYSQIELRIMA 717

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  L AF  G+D++  T A  F+V    VT DQR   K +   L Y   A     
Sbjct: 718 HLSQDKGLLTAFSEGKDIHRATAAEVFSVELDDVTSDQRRSAKAINFGLIYGMSAF---G 774

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +     +        +        +E       +M E   + A +  ++ T   R +   
Sbjct: 775 LGRQLNIPQKEAKKYMT-----RYFERYPGVLTYMDET-RKVAKDKGYVETLSGR-RLYL 827

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + ++R         +A       G A  II +   +V       + N++ +++     L
Sbjct: 828 PEINARNKMSQMAAERAAINAPMQGTASDIIKKAMINVAGWMETVETNSIRMLMQVHDEL 887

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI--LAEG 613
           V+               +      Y  K+ E +  A+S D+  LAE 
Sbjct: 888 VF-------------EIKEEHVEAYVVKIKELMAAAMSLDVPLLAEA 921


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 122/695 (17%), Positives = 220/695 (31%), Gaps = 164/695 (23%)

Query: 5   FIDFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
            ID ET S   +     G+    E      I  A  +   P +L    +   + Q LK  
Sbjct: 332 SIDTETTSLNPMEAELVGLSLCTEPGHAAYIPLAHHYQGVPSQL----NREQVLQRLKPW 387

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LEN+D+  V  N  ++R V     N  + ++     TL+ +       +      A +  
Sbjct: 388 LENSDIPKVGQNLKYDRHV---FANHGVMLNGIAHDTLLQSYVLESHLSHDLDSLARRHL 444

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +     ++  +  K               +   +  G Y   D  +   +   L P+ 
Sbjct: 445 DIQTISYDDVTGKGAK----------RIGFEQVEIQQAGIYAAEDADIPLRLHHFLYPII 494

Query: 180 SK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           SK           E  L  +   I   G  +D  L    +  +  +   L+Q+  SL  G
Sbjct: 495 SKDAHLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLREQSGELARQLVILEQQAHSLA-G 553

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    ++++  LF +  L +   T      T + VL       P    + + R  A 
Sbjct: 554 RAFNLNSTKQIQEILFGQHKLPVIKKTPKGAPSTDEEVLQQLALDYPLPKILLDYRSLA- 612

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P     +  R H    Q + 
Sbjct: 613 ------------------------------KLRSTYIDKLPQMVNRQTGRVHTNYAQAVA 642

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   IA  G  ++ AD + IE R++A ++ +   +
Sbjct: 643 VTGRLASNDPNLQNIPVRTPEGRRIREAFIAPSGWYIISADYSQIELRIMAHISQDAGLI 702

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  F ++  QV  +QR   KV+   L Y         +A+  G++ 
Sbjct: 703 RAFLGGQDIHSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMSEF---GLATQLGIDR 759

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +     +                                             +  +R   
Sbjct: 760 SAARAFID--------------------------------------------RYFARYPG 775

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578
           + + + +  E   +NG       RR               L LP  RS  + R +G  R+
Sbjct: 776 VADYMQRTRELARQNGYVETVLGRR---------------LQLPDIRSSQHNRRMGAERA 820

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
            +N                     Q  + DI+   M++  +          +++ VHDE+
Sbjct: 821 AINAPM------------------QGTAADIIKLAMISVHQWLVKAPLQSKLIMQVHDEL 862

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
           V E  + + F     L  LM +   +   +PLK E
Sbjct: 863 VLEVIEDELFVVKENLIILMENT--FKLDVPLKVE 895


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 113/645 (17%), Positives = 210/645 (32%), Gaps = 142/645 (22%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107
            ++ + L+  L + +   V  N+ F+  V    ++  I +   +   ++A     P    
Sbjct: 414 EIVLEKLRPILASDNYPKVFQNAKFDIDV---FYHQGITVKGLVFDTMVASYVLHPELTH 470

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L+ + +   L        K L                 K            YC  D   
Sbjct: 471 NLEDLCDRY-LDGITSLSYKSL------------GIPGGKTIADLDITTTANYCGLDAYA 517

Query: 168 TREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERT 216
           T  + ++L+   +K   L+ L              + + G  +++     L+Q ++ +  
Sbjct: 518 TYLLREKLQAELTKIPSLYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLERDLA 577

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
            ++++    + G   +    ++L   LF    L+ +   +T     T Q VL   +   P
Sbjct: 578 DIEKKAYE-SIGETFNLGSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHP 636

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +  +R                                 S+         P    P+
Sbjct: 637 LIDYILEHR-------------------------------TLSKLKSTYVDALPKLAEPK 665

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
            +R H + +Q IT      +S+P+   I      S  +R   I  +G  LV AD + IE 
Sbjct: 666 TARVHTDFNQTITSTGRLSSSNPNLQNIPVRSEFSRRIRQAFIPEDGYLLVSADYSQIEL 725

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA ++ E   L+A+ + +D++  T    F+    ++T ++R++GK +   + Y  GA 
Sbjct: 726 RILAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--GEITPEERSLGKTINFGVIYGMGA- 782

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             QK A  + L +      ++                   EN  + AI   ++ T   R 
Sbjct: 783 --QKFARESKLTVEQGRKFIEKYHQRYAQ------VFQYLENSKKQAIAQGYVETILGRR 834

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           +                                          Y   D   L  +    R
Sbjct: 835 R------------------------------------------YFNFDNPLLKRL----R 848

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----Y 622
            L   D+  +   LN    QL R            +Q  S DI+   M+   +       
Sbjct: 849 GLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRA 902

Query: 623 DIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666
            ++L VHDE+V E P  +  +    +   M    S    +PL  E
Sbjct: 903 RLLLQVHDELVLEVPREEWPSLESKIKTTMEEAVS--LTVPLLVE 945


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 111/649 (17%), Positives = 199/649 (30%), Gaps = 157/649 (24%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL 109
             +P+ LK  LE+  V  VA N  ++  +LK      I    +  T++++        A 
Sbjct: 464 DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAH 519

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                + K         K++                N             Y   D  VT 
Sbjct: 520 GMDPLSEKFLGHTPIPYKDVA----------GSGRANVTFDLVDIDRATHYAAEDADVTL 569

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            ++  L+P              E+ L  +   +  RG  VD  +   L+  +     +L+
Sbjct: 570 RLWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLE 629

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274
            E+ +L  G   +    ++L   LF + GL     T+T    T   VL            
Sbjct: 630 DEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 688

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++ + R                                 ++         P    P   R
Sbjct: 689 KIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETKR 717

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H       T      +S+P+   I         +R+  I++ G KL+ AD + IE RVL
Sbjct: 718 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 777

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A      KAFE G D++  T +  F V    +  + R   K +   + Y   A    
Sbjct: 778 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF--- 834

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A+   +  +     +K      ++ +     R   E+    A +  ++ T        
Sbjct: 835 GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG----- 883

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                           +R + P +             PS R+  
Sbjct: 884 --------------------------------RRINYPEIRSSN---------PSVRAF- 901

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------- 622
                N R+ +N                    +Q  + D++   M+    A         
Sbjct: 902 -----NERAAINAP------------------IQGSAADVIRRAMIKIEPALAEAGLAER 938

Query: 623 -DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             ++L VHDE++ E  D D +    ++  +M +    A  +  PLK + 
Sbjct: 939 VRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDA 987


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/605 (15%), Positives = 184/605 (30%), Gaps = 96/605 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET         G      D  ++  +F   ++         +      +    
Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N  + +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLE---NYGVQVKGALFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  VT ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----IYRYACEDADVTLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +          E  L  +   I   G  +D       +     +  +++QE+ 
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF +  +      T+T    T + VL S +   P   ++  
Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    PR  R H  
Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE R++A ++
Sbjct: 680 FNQTVTSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF +  D++  T A+ + +    V  D R   K     + Y         +A 
Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        + +     +   E   + A E  ++ T   R K+     
Sbjct: 797 RMNVDRKEAKELIDG------YFETYPSVKAYMEKSIQIAQEKGYVETIFHR-KRFLPDI 849

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572
           +SR + +     +        G A    K     +    + +     ++L     L +  
Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909

Query: 573 VGNNR 577
             N +
Sbjct: 910 PVNEK 914


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 109/674 (16%), Positives = 210/674 (31%), Gaps = 148/674 (21%)

Query: 33  FAFGFDDHPVELWDCV-HDPVMPQVL-----KEALE----NTDVTIVAHNSYFERTVLKA 82
             +G     +           +P  L      +AL     + +      N+ ++R +L  
Sbjct: 418 MCWGPGSDDLAYIPVSHQGDPIPDQLPLETVLQALAPWLASGEHPKALQNAKYDRLIL-- 475

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
                +P+   +   +LA      +A       A +          +L+ +  +G+    
Sbjct: 476 -LRHGLPLAGVVMDTLLADYLRDAAAKHGLDAMAQRDYGISPTLFSDLVGKAKEGKASN- 533

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIF-------KRLEP-----LSSKEQELWYLD 189
                            +YC  DV +TR++        + L P     LS  E  L  + 
Sbjct: 534 -------FSEVPLESAAQYCGMDVHLTRKLAIDLNQQLEALGPQLPNLLSKVELPLEPVL 586

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  +DV     L+  +     +L+   +     +  +    ++L   LF   GL
Sbjct: 587 AVMEATGIRIDVPYLEALSCEIGTNLERLEASAKE-AAEIDFNLASPKQLGDLLFNTLGL 645

Query: 250 HLED--LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
             +    T+T       VL   +   P    V  +R+                       
Sbjct: 646 DRKKSRRTKTGYSTDATVLEKLEHDHPVVPLVLEHRVL---------------------- 683

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
                    S+         P        R H + +Q +T      +S+P+   I     
Sbjct: 684 ---------SKLKSTYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTE 734

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            S  +R   +  +G  L+ AD + IE R+L  ++GE+   +A+  G+D++  T      +
Sbjct: 735 YSRRIRKAFLPQDGWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--L 792

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +V+ D+R +GK +   + Y  GA   Q+ A  TG++ +     +  +   + +    
Sbjct: 793 DKDEVSPDERRLGKTINFGVIYGMGA---QRFARETGVSQSEAKDFL--SKYKQRYPKVF 847

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            F     E     A+   ++ T   R +                                
Sbjct: 848 AFL----ELQERLALSQGYVETILGRRRP------------------------------- 872

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                         D+N L  +      +   ++    +       Q  R          
Sbjct: 873 -----------FHFDRNGLGRL----NGMDPLEINLEVARRGGMEAQQLRAAANAP---- 913

Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
             +Q  S DI+   M+              ++L VHDE+V ET P+       ++   M 
Sbjct: 914 --IQGSSADIIKLAMVQLQAKLESKNLPARLLLQVHDELVLETEPEALAVVEELVVQTMK 971

Query: 653 SNPSWAKGLPLKAE 666
           +       +PL+ E
Sbjct: 972 NAID--LSVPLEVE 983


>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
 gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
          Length = 916

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 103/667 (15%), Positives = 196/667 (29%), Gaps = 172/667 (25%)

Query: 28  VCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFER 77
             ++  +F  +          HD    P+ L            LE+     V  +  ++ 
Sbjct: 355 AELVGLSFSVEAGEAAYVPVAHDYEGAPEQLDRDWVLEQLKPWLEDDSKAKVGQHLKYDA 414

Query: 78  TVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
            VL            D  +  ++   V +R +    A K +G             +++  
Sbjct: 415 NVLNNYQITLRGIAYDTMLESYVYNSVSSRHDMNTLASKFLG-------HTCVSFEDIAG 467

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSS 180
           +  K +T   +             +   Y   D  +T  + + + P              
Sbjct: 468 KGAKQKTFNQI----------DLEVAAFYAAEDADITLRLHQAIWPKIETTPELVSIFKD 517

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L  +   +   G  +D  L H  +  +  +  +L+ +      G   +    ++L+
Sbjct: 518 IECPLIPVLAKMEQTGALIDPELLHAQSSEIAAKLQELEIKAHEEA-GESFNLSSPKQLQ 576

Query: 241 TWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
             LF + GL +   T      T + +L    +       +  +R                
Sbjct: 577 VILFEKQGLPVIKKTPKGQPSTAEPILQELAQDYELPRLIMEHRSL-------------- 622

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                            S+         P   + +  R H    Q IT      ++DP+ 
Sbjct: 623 -----------------SKLKSTYTDKLPEM-IQKTGRIHTSYHQAITATGRLSSTDPNL 664

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   IA +G KLV AD + +E R++A ++ +   L AF    D++  
Sbjct: 665 QNIPIRSAEGRRIRQAFIAPKGYKLVAADYSQVELRIMAHLSQDSGLLDAFTKDADVHKA 724

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V+  +VT +QR   K +   L Y   A     +A   G+        +K    
Sbjct: 725 TAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMSAF---GLAKQLGIGRPEAGKYIK---- 777

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                 + +++  V +      +  ++ 
Sbjct: 778 -------------------------------------RYFERYPGVQQYMENTREGAKE- 799

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                      +  V  +Y              GR L   D+       N   RQ     
Sbjct: 800 -----------KGYVETIY--------------GRRLYLPDIKAK----NAMMRQAAER- 829

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNA 644
                     +Q  + DI+   M+        T     +++ VHDE++ E  + D E   
Sbjct: 830 ----TAINAPMQGSAADIIKRAMIKMHDWLQGTDLDVKMIMQVHDELIFEVAEKDLEAAQ 885

Query: 645 SMLYHLM 651
             +  +M
Sbjct: 886 KKIVDIM 892


>gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 832

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/555 (17%), Positives = 172/555 (30%), Gaps = 80/555 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 258 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 317

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 318 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 377

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177
           E+  +  K  + + +          A    G Y   +  +T  + +           L+P
Sbjct: 378 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 427

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 428 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 486

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 487 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 531

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 532 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 580

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 581 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 640

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 641 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 697

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +    N+    +    E    +   G             +++   L     +     
Sbjct: 698 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 750

Query: 532 IENGKAIIARKRRDV 546
              G A    K+  V
Sbjct: 751 PMQGTAADIIKKAMV 765


>gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 921

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 101/579 (17%), Positives = 180/579 (31%), Gaps = 81/579 (13%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           E+  +  K  T + +          A    G Y   +  +T  + +  E           
Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELDNVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T   R +      +++   L     +     
Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              G A    K+  V +    ++   +  ++L     LV
Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878


>gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020]
          Length = 921

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 101/579 (17%), Positives = 181/579 (31%), Gaps = 81/579 (13%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177
           E+  +  K  T + +          A    G Y   +  +T  + +           L+P
Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 LS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           +    E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLHDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T   R +      +++   L     +     
Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKTQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              G A    K+  V +    ++   +  ++L     LV
Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 120/678 (17%), Positives = 214/678 (31%), Gaps = 165/678 (24%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56
           D ET + +D       + A    ++ F+  FD          HD            +   
Sbjct: 352 DTET-TSLD------YRVA---QIVGFSVAFDAQDAYYVPLAHDYENAPAQLDREQILAQ 401

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           +K  LE+  V  + H+  ++  VL+   N  I +  W    +LA    N + +       
Sbjct: 402 IKPILEDESVQKIGHHLKYDAHVLE---NHGIELKGWYFDTMLASYVLNAVATRHGMDDV 458

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +    S      +++  +  K +T   +                 Y   D  VT  +F+ 
Sbjct: 459 SRLYLSHLTTTFEQVAGKGAKQKTFNQI----------EIETAAHYAAEDAHVTYRLFEV 508

Query: 175 L------EP-----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L       P     L + E  +  +   + + G  +D+     L          L+ ++ 
Sbjct: 509 LDAKLQKHPELVNILHNVEMPVARVLTIMEENGIELDLGFLDQLGIEFANTMANLESQIT 568

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            L  G   +    +++   LF + GL      + T     S+++ +  +           
Sbjct: 569 ELA-GQSFNVSSPKQVGEILFDKLGL---KGGKKTATGQYSTSESVLEKIDHPITEL--- 621

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                   L + G S+           Q      R H    Q +
Sbjct: 622 -----------------------ILDYRGLSKLKSTYTDGLLKQANSDTHRVHTSYHQAL 658

Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      ++DP+   I     I   +R   IA +G+ L+ AD + IE R++A  + ++  
Sbjct: 659 TATGRLSSTDPNLQNIPVREEIGRQIRKAFIAPQGRVLLAADYSQIELRLMAHFSQDEAL 718

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF+ G+D++  T A    VA   VT DQR   K +   L Y  G   F  +    G +
Sbjct: 719 VDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQAKAVNFGLLY--GMSEF-GLTRQLGFS 775

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                            E++  +     + +P        +    ER ++  R       
Sbjct: 776 R----------------EESRGYIAKYFQRYP-------GVLDYMERTRQIAR------- 805

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  Q F +TI                                GR L   D+     
Sbjct: 806 ------EQGFVETIL-------------------------------GRRLYTPDI----M 824

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVC 634
             N   +Q          L     Q  + DI+   M+   +        ++L VHDE+V 
Sbjct: 825 ASNKMIKQAAERAAINAPL-----QGSAADIIKMAMIAVDQMLPKDQTKMLLQVHDELVF 879

Query: 635 ETPDT-DEFNASMLYHLM 651
           E  ++  +  AS L  +M
Sbjct: 880 EVDESIADELASKLADVM 897


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 113/650 (17%), Positives = 205/650 (31%), Gaps = 158/650 (24%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
             +P+ LK  LE+T V  +A N  ++  ++K      I    +  T++L+        L 
Sbjct: 466 DALPR-LKALLEDTSVLKIAQNLKYDYLLMKRY---GIETKGFDDTMLLSYV------LD 515

Query: 111 AVGEALKLSSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
               A       M+   E  L  +    +        N             Y   D  VT
Sbjct: 516 GGANAT----HGMDSLSERWLGHKPIAYKDVAGSGKSNITFDLVDIDRATAYAAEDADVT 571

Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             ++  L+P  + E          + L  +   + +RG  +D  +   L+  +     +L
Sbjct: 572 LRLWLVLKPRLAAEKLATVYERLERPLVPVLAHMEERGITIDRQILSRLSGELAQGAARL 631

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273
           + E+ +L  G   +    ++L   LF + GL     T+T    T  +VL           
Sbjct: 632 EDEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSAQVLEDLAAAGFELP 690

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R                                 ++         P    P   
Sbjct: 691 RKIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETK 719

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H       T      +S+P+   I         +R+  I++ G KL+ AD + IE RV
Sbjct: 720 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 779

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 780 LAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAF-- 837

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A+   +  +     +K       + +     R   E+    A +  ++ T       
Sbjct: 838 -GLANQLSIERSEAGDYIK------RYFERFPGIRDYMESTKATARDKGYVET------- 883

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                                         I  +R   P +             PS R+ 
Sbjct: 884 ------------------------------IFGRRVHFPEIRSSN---------PSVRAF 904

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----- 623
                 N R+ +N                    +Q  + D++   M+    A  D     
Sbjct: 905 ------NERASINAP------------------IQGSAADVIRRAMIKMEPALADAGLGD 940

Query: 624 ---IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
              ++L VHDE++ E  D D E +  ++  +M +    A    +PLK + 
Sbjct: 941 RVRMLLQVHDELIFEVEDADVERSTPVIVSVMENAAMPAVNMSVPLKVDA 990


>gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia
           stuttgartiensis]
          Length = 887

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/554 (17%), Positives = 179/554 (32%), Gaps = 88/554 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFD---------DHPVELWDCVHDPVMPQVLKEALENT 64
           IDL   G         ++  +F ++           P        D V+P+ +++ LE+ 
Sbjct: 317 IDLETTGTDPLKAH--IVGLSFSWEQKEAYYVPLMAPENTRHLTADIVLPE-IRKVLEDE 373

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQK 122
               +  N  ++  VLK     +I +       ++A     P          A +  S K
Sbjct: 374 SKKKIGQNIKYDLLVLKKH---NIGLKGIYFDSMIASYLLNPAKRNHNLDDIAFEYLSYK 430

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                ELI     G   + +     P          +Y   D  +T  + + + PL  KE
Sbjct: 431 TIMIAELI-----GSGKQQITMDKVPV-----DKVCQYACQDADITFRLAETMAPLLKKE 480

Query: 183 --QELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              +L+        Y+   +   G C++      ++  +  +   L++E+  +      +
Sbjct: 481 GLWQLFQEIEIPLIYVLAEMEGNGICINADFLRQMSGDLAAQLQCLEKEIYRVA-EQEFN 539

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L     T+T       VL+S     P        R  A      
Sbjct: 540 ISSHKQLGAILFDKFQLPKLRRTKTGVSTDANVLASLAWRHPLPKLALEYRQLA------ 593

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                    +         P        + H   +Q +T     
Sbjct: 594 -------------------------KLKSTYADALPNLLNQDTGKIHTTFNQTVTSTGRL 628

Query: 350 ITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +S+P+   I     I   +R   I   +    + AD + IE R+LA  + +   ++AF 
Sbjct: 629 SSSNPNLQNIPVKTDIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDTALMEAFR 688

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++    +  ++V    VT + R   K +   + Y         ++  TGL+LN   
Sbjct: 689 EDLDIHAAVASSIYHVPLENVTTEMRRNAKAINFGIIYGLNEY---GLSRDTGLSLNDAK 745

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +        +       R  ++   E A E  ++ T   R K+A    +++     N 
Sbjct: 746 DFIDA------YFTLYQGVREFRDKVVEEAKEMGYVKTLFNR-KRAIPDINAKNKRFRNL 798

Query: 524 LHQAFEQTIENGKA 537
             +    TI  G A
Sbjct: 799 AERIAINTIIQGSA 812



 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYH 649
               I+Q  + D++   M N             ++L +HDE++ E      E    M+  
Sbjct: 803 AINTIIQGSAADLIKVAMNNIYSKLKCGDYEARMLLQIHDELLFEVGVQALEQTRIMVQE 862

Query: 650 LMT 652
            M 
Sbjct: 863 EMG 865


>gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 101/579 (17%), Positives = 181/579 (31%), Gaps = 81/579 (13%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           E+  +  K  T + +          A    G+Y   +  +T  + +  E           
Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T   R +      +++   L     +     
Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              G A    K+  V +    ++   +  ++L     LV
Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878


>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
 gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
          Length = 1003

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 110/637 (17%), Positives = 202/637 (31%), Gaps = 145/637 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           LK  LE+  V  +A N  ++  ++     +D+       T++++     G P        
Sbjct: 476 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GIDVAPFD--DTMLISYVLDAGTPHGHGMDQL 532

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A K       + K++          + +       H             D  VT  ++  
Sbjct: 533 AEKWLGHTPLQLKDVTGSGKSSVGFDQVDIDKATAH----------AAEDADVTLRLWLV 582

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L+P  +           E+ L  +   +  RG  VD  +   L+  +     +L++E+  
Sbjct: 583 LKPRLAAKGLVSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQ 642

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF   GL     T+T    T  ++L            ++ + 
Sbjct: 643 LI-GERINIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDW 701

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 ++         P    P   R H   
Sbjct: 702 RQL-------------------------------TKLKSTYTDALPGFIHPDTRRVHTSY 730

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
               T      +SDP+   I         +R+  IA +G +LV AD + IE RVLA +A 
Sbjct: 731 ALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAE 790

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  G D++  T +  FNV    +  + R   K +   + Y   A     +A+ 
Sbjct: 791 IPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQ 847

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +     ++ +K                                            +  
Sbjct: 848 LSIPREEASNYIK--------------------------------------------KYF 863

Query: 515 SRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
            R   + + + +      E+G    I  +R   P +             PS R+   R  
Sbjct: 864 ERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSN---------PSIRAFNERAS 914

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            N R                 G   + I +A+ R    E  ++  K    ++L VHDE++
Sbjct: 915 INARL---------------QGTAADIIRRAMVR---MEEALDRAKLSARMLLQVHDELI 956

Query: 634 CETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667
            ET + + E    ++ H+M +   P+ +  +PL  + 
Sbjct: 957 FETVEAEVEATIPVVRHVMENAAMPAVSMSVPLHVDA 993


>gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 822

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 94/555 (16%), Positives = 171/555 (30%), Gaps = 80/555 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D   V  ++ 
Sbjct: 248 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 307

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 308 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 367

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177
           E+  +  K  + + +          A    G Y   +  +T  + +           L+P
Sbjct: 368 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 417

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 418 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 476

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 477 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 521

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 522 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 570

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 571 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 630

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 631 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 687

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +    N+    +    E    +   G             +++   L     +     
Sbjct: 688 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 740

Query: 532 IENGKAIIARKRRDV 546
              G A    K+  V
Sbjct: 741 PMQGTAADIIKKAMV 755


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/508 (17%), Positives = 161/508 (31%), Gaps = 85/508 (16%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSAL 109
            LK  LE+ D   V  N  +++ VL            D  +  ++   V +R N    AL
Sbjct: 401 QLKPLLESPDHKKVGQNLKYDKNVLANHDICLEGIAEDTMVQSYVLNSVSSRHNMDALAL 460

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +GE       +    + L  +  K  T   L               G Y   D  +T 
Sbjct: 461 HYLGE-------ETTTFESLAGKGAKQLTFNQL----------ELDKAGPYAAEDADITL 503

Query: 170 EIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L P  +            +  L  +   +  RG  +  +     +Q +     +L
Sbjct: 504 RLHQALRPQLAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAEL 563

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274
           +        G   +    ++L+   + + GL +   T      T + VL           
Sbjct: 564 ETAAYE-AAGETFNLGSPKQLQVIFYEKLGLPVLKKTPKGAPSTAEPVLQELAHRHELPR 622

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R                                 S+         P     R  R
Sbjct: 623 LLLEHRSL-------------------------------SKLKSTYTDTLPELIHHRTGR 651

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q +T      +S+P+   I         +R   +A +G KL+ AD + IE R++
Sbjct: 652 VHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYSQIELRIM 711

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ ++  L AF  GED++  T A  F V   +V  DQR   K +   L Y   A    
Sbjct: 712 AHLSEDKGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINFGLIYGMSAF--- 768

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A    +        +        + +         +N  + A ED ++ T   R +  
Sbjct: 769 GLARQLDVERKVAQQYID------RYFERYPGVLTYMDNIRKQAHEDGYVETLFGR-RLY 821

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKA 537
             + ++R  +L     +        G A
Sbjct: 822 LPEINTRNKQLQQAAERTAINAPMQGTA 849


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 117/653 (17%), Positives = 221/653 (33%), Gaps = 145/653 (22%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHD--PVMP--QVLKEALENTDVTIVAHNSYFERTVLKA 82
           D  ++  +F +            D    +   ++ +E  E  DV+ VAHN  F+  +L+ 
Sbjct: 392 DAELVGLSFSYRKGLAYYIPLSEDRSEAIQTLEIFREFFEKEDVSKVAHNLKFDYKILQQ 451

Query: 83  C-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
             F+L   +   +    L   +G    +  + E     + K    + LI +  K +    
Sbjct: 452 YGFSLKGLLFDTMIAHYLLNPDG-KHVIDYLSEIY--LNYKPVALESLIGKKGKNQ---- 504

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQT 191
                             Y   D  +T ++++   P   KE            L  +   
Sbjct: 505 -----LTFRSLTVEEQTNYAAEDADITWQLYEVFAPQLKKENLEDLFYKVEMPLLRVLAK 559

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  +D       +  ++ +   L+ ++  L   +  +     +L   LF +     
Sbjct: 560 MELEGVALDEKWLAQESIDLENDLRGLEAKIFELAD-VEFNVNSPRQLGEILFEKL---- 614

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
                           KL P+A +    +   S   + KL+   +       ++  L++ 
Sbjct: 615 ----------------KLDPKAKKTKTGQYATSEDVLQKLSAKHDI------IKYILEYR 652

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366
              +         P Q     +R H    Q         + +P+   I         +R 
Sbjct: 653 TYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAATGRLASVNPNLQNIPIRTLRGQQIRG 712

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +A+EGKK++ AD + IE R++A ++ E+  + AF+ GED++V+T AR F++   +VTK
Sbjct: 713 AFVAAEGKKIISADYSQIELRLIAEISNEENMILAFQNGEDIHVSTAARLFDIPLEEVTK 772

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            QR   K +   + Y  GA A    A  TGL+                   A+       
Sbjct: 773 TQRGQAKTVNFGIIYGQGAFAL---AEQTGLSRTE----------------AKQMIESYF 813

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           EN+P              R+KK   ++  +  EL       + +TI N K    R  +D+
Sbjct: 814 ENYP--------------RLKKYMGEQVQKAQEL------GYVETILNRK----RHLKDI 849

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                                         R+ +N                    +Q  +
Sbjct: 850 NSANFV------------------VKAHAERNAVNAP------------------IQGSA 873

Query: 607 RDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
            D++   M+   +   +      ++L VHDE++ E P  + E    ++   M 
Sbjct: 874 ADVIKLAMIKIDQKLSELNLKTKMLLQVHDELLFEAPQEEVEMVMKLIKTEME 926


>gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 921

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 100/579 (17%), Positives = 179/579 (30%), Gaps = 81/579 (13%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+   T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPGKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           E+  +  K  T + +          A    G Y   +  +T  + +  E           
Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T   R +      +++   L     +     
Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              G A    K+  V +    ++   +  ++L     LV
Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 110/649 (16%), Positives = 200/649 (30%), Gaps = 157/649 (24%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL 109
             +P+ LK  LE+  V  VA N  ++  +LK      I    +  T++++        A 
Sbjct: 31  DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAH 86

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                + K         K++                N             Y   D  VT 
Sbjct: 87  GMDPLSEKFLGHTPIPYKDVA----------GSGKANVTFDLVDIDRATHYAAEDADVTL 136

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            ++  L+P  +           E+ L  +   +  RG  VD  +   L+  +     +L+
Sbjct: 137 RLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARLE 196

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274
            E+ +L  G   +    ++L   LF + GL     T+T    T   VL            
Sbjct: 197 DEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 255

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++ + R                                 ++         P    P   R
Sbjct: 256 KIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETKR 284

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H       T      +S+P+   I         +R+  I++ G KL+ AD + IE RVL
Sbjct: 285 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 344

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A      KAFE G D++  T +  F V    +  + R   K +   + Y   A    
Sbjct: 345 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF--- 401

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A+   +  +     +K      ++ +     R   E+    A +  ++ T        
Sbjct: 402 GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG----- 450

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                           +R + P +             PS R+  
Sbjct: 451 --------------------------------RRINYPEIRSSN---------PSVRAF- 468

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------- 622
                N R+ +N                    +Q  + D++   M+    A         
Sbjct: 469 -----NERAAINAP------------------IQGSAADVIRRAMIKMEPALAQAGLAER 505

Query: 623 -DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             ++L VHDE++ E  D D +    ++  +M +    A  +  PL+ + 
Sbjct: 506 VRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLRVDA 554


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 95/606 (15%), Positives = 188/606 (31%), Gaps = 96/606 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57
            T+ ID ET S           YA D  ++  +F  ++          D      +  + 
Sbjct: 348 QTVSIDTETTS----------LYAMDAELVGLSFAVEERQAFYVPVPADRKEAEKIVNIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           K   E+  +  V  N  ++  VL+   N  + +   +   ++A     P     +  + E
Sbjct: 398 KPLYESEAIMKVGQNMKYDLEVLR---NYGVCLRGALFDTMIAHYLIQPELRHNMDYMAE 454

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++    LI    KG+  + + + +            EY   D  +T ++  
Sbjct: 455 VYLNYQTIHIDT---LIG--AKGKHQKSMRELSP-------AQVYEYAAEDADITLQLKN 502

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LEP   +          E  L  +   +   G  +D       + I+      L+  + 
Sbjct: 503 VLEPKLREVEAEELFYQIEMPLVPVLAEMEMNGVRIDTQSLKETSDILTRRMHDLEARIY 562

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            L  G   +    +++   LF    +      T+T    T + VL   +        +  
Sbjct: 563 ELAGG-EFNIASPKQVGDMLFGRMKIIDKPKKTKTGQYVTSEEVLQQLRGKHEIVGDIL- 620

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          + G  +         P     R  R H  
Sbjct: 621 ------------------------------DYRGLKKLLGTYVDALPKLINTRTGRIHTS 650

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I  EG     AD + IE RV+A ++
Sbjct: 651 FNQTVTATGRLSSSEPNLQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLS 710

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   ++AF  G D++  T A+ +  A   VT+D+R   K     + Y         +A 
Sbjct: 711 GDAHMIEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIYGITVF---GLAE 767

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++ N    L+        +   +++    +E    H   +          ++     
Sbjct: 768 RLDIDRNEAKQLID--GYFMMFPQVKDYMEHSKEVARTHGYVETIFHR-----RRYLPDI 820

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRD 572
           +S  + +     +        G A    K   + +     K+     ++L     L +  
Sbjct: 821 NSHNATVRGFAERNAINAPIQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDELNFSV 880

Query: 573 VGNNRS 578
               + 
Sbjct: 881 FPEEKE 886


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 927

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 109/699 (15%), Positives = 207/699 (29%), Gaps = 170/699 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL----KE 59
           + +D ET S   +             ++  +F  ++               Q +    K 
Sbjct: 357 ISLDTETTSTNAIE----------AQLVGLSFAIEEKKAYYVPVPEQADEAQNIVNRFKA 406

Query: 60  ALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LK 117
             EN     V  N  ++  VL+     L  P+   +    L +   L   +  + E  L 
Sbjct: 407 IYENPKTLKVGQNIKYDLEVLRNYGIALQGPLFDTMVAHYLLQPE-LRHNMDFMAEVYLN 465

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +  ++    LI         +    +N             Y   D  +T ++   L+P
Sbjct: 466 YETVHID---ALIG-------PKGKAQKNMRELAP--SEVYNYACEDADITLQLKNVLQP 513

Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                      +  E  L  +   +   G  +D A     +Q+      +L+QE+     
Sbjct: 514 KLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ-AA 572

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
           G   +    +++   LF E  +      T+T    T + VL + +   P    +      
Sbjct: 573 GKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHIL----- 627

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                      +    +         P    PR    H   +Q 
Sbjct: 628 --------------------------DYRALKKLLGTYVDALPKLINPRTGHIHTSFNQA 661

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      +SDP+   I         +R C I  EG +   AD + IE RV+A ++ +  
Sbjct: 662 VTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDAN 721

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G D++  T A+ +N   ++VT+D+R   K     + Y         +A    +
Sbjct: 722 MLDAFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGIIYGITVF---GLADRLNI 778

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                  L+        +       +   E   E A                  + +  V
Sbjct: 779 ERAEAKQLIDG------YFKMFPQVQQYMEQAKETA------------------RANGYV 814

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
              +                    +RR +P +    +  N  +                R
Sbjct: 815 ETFF-------------------HRRRYLPDI----NSGNATVR-----------AIAER 840

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
           + +N                    +Q  + DI+   M+              ++L VHDE
Sbjct: 841 NAINAP------------------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDE 882

Query: 632 IVCETPDTDEFNASMLYHLMTS-NPSWAKGLPLKAE-GY 668
           +      T++     +  +M     ++   +PL A+ G+
Sbjct: 883 LNFSVLPTEKEQVERI--VMEEMQAAYLLDVPLVADSGW 919


>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
 gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
          Length = 948

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 111/639 (17%), Positives = 195/639 (30%), Gaps = 154/639 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + ++  L++     + H++ ++  V     N  + +       +L        + + VG 
Sbjct: 426 ERMRAWLQDPARPKLLHHAKYDAHV---FANEGVALAGIQDDTMLQAYVL--ESHRGVGL 480

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              L+ + +  G       C     +  +D        A    G Y   D   T ++   
Sbjct: 481 N-DLAQRYLGRGGITYEELCGKGAKQIGFD------EVAVEQAGHYACEDADFTLQLHHA 533

Query: 175 LEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L P  + +  L  + Q           +   G  VD A     +  +  E  +L+Q    
Sbjct: 534 LRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHRLGQEMLQLEQRAYE 593

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L   LF    L +   T     +T + VL+   +  P    +    
Sbjct: 594 LA-GQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLTRLAQDYPLPQVLLE-- 650

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                        + G S+         P     R  R H    
Sbjct: 651 -----------------------------YRGLSKLKSTYTDKLPRMINARTGRVHTHYS 681

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q         +SDP+   I         VR   +A  G  LV AD + IE R++A ++ +
Sbjct: 682 QAAVVTGRLASSDPNLQNIPVRTEAGRRVREAFVAEHG-VLVSADYSQIELRIMAHVSDD 740

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G+D++  T +  F VA  +V  DQR   K +   L Y  G      +AS  
Sbjct: 741 ANLQQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIYGMGVF---GLASNL 797

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+  +     +    A               E+  + A +  ++ T   R          
Sbjct: 798 GITRDAAQAYIDRYFARYP------GVAQYMEHTRQLARQQGYVETVFGR---------- 841

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVG 574
                                                       L LP  R+    R  G
Sbjct: 842 -------------------------------------------RLQLPDIRAASGPRRQG 858

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTV 628
             R+ +N                     Q  + D++   M      ++A +    +++ V
Sbjct: 859 AERAAINAPM------------------QGTAADLIKMAMVAVQDWLDAERLATRMIMQV 900

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE++ E PD + +   + L  LM         +PL AE
Sbjct: 901 HDELILEVPDGELDAVRARLPELMCGVA--RLRVPLVAE 937


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 99/645 (15%), Positives = 180/645 (27%), Gaps = 159/645 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAV 112
           LK  LE+  +  +  N  ++  + +      F   I +  +  T++L+ +          
Sbjct: 420 LKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTMLLSYAL--------F 471

Query: 113 GEALKLSSQKMEEGKELIARFCK-GETHECLYDRNK---PNHREAWRLFGEYCKGDVTVT 168
                     + E               + L    K      R        Y   D  +T
Sbjct: 472 AGQHGHGMDTLSE-----RYLSHSPIPIKSLLGTGKSAITFDRVPIADAVAYAAEDADIT 526

Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             ++K  +P   +          E+ L  +   +   G  VD      ++     +   L
Sbjct: 527 LRLWKLFKPQLHQQRVTTVYETLERPLSPVLAKMEMEGVKVDRDTLSRMSNAFAQKMAAL 586

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274
           + E+  L  G   +    ++L   LF + GL      +T    T   +L           
Sbjct: 587 ESEIHELA-GETFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADILEDLATEHDLPA 645

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +V + R                                 S+              P   R
Sbjct: 646 RVLDWRQL-------------------------------SKLKSTYTDALQDHIHPETGR 674

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q   +     ++DP+   I         +R   +A EG  L+  D + IE R+L
Sbjct: 675 VHTSYVQTGANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRIL 734

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +AG     +AF  G+D++  T +  FNV  +++T D R   K +   + Y        
Sbjct: 735 AHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAINFGVIYGISGFGLA 794

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           +                          +A+ F     E  P                   
Sbjct: 795 RNLRI-------------------PRAEAQGFIDRYFERFP------------------G 817

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
            R+               + QT+   K                       +  P   +  
Sbjct: 818 IRRYMDDTVAF--AKEHGYVQTLFGRK-----------------------IHTPEIAAKG 852

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIV 625
            R     R+ +N                    +Q  + D++   M+            ++
Sbjct: 853 PRAGFAKRAAINAP------------------IQGTAADVIRRAMIRMPEAIAHLPARML 894

Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWA--KGLPLKAEG 667
           L VHDE++ E P++  E        +M S    A    + L A+ 
Sbjct: 895 LQVHDELLFEVPESAAEDTIEAARKVMESAADPAVHLDVKLVADA 939


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 105/637 (16%), Positives = 190/637 (29%), Gaps = 145/637 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA- 115
           L+  L++  V  +  N  ++  +L        P    +    +  +      + A+ E  
Sbjct: 451 LRPLLQDPSVLKIGQNLKYDWVLLYRHGIEIAPYDDTMLISYVLEAGTQAHGMDALAERW 510

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L  +    +E                                  Y   D  VT  ++K L
Sbjct: 511 LGHTPVSYKE-------------VTGSGRSKVTFDMVGLERATVYASEDADVTLRLWKVL 557

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P  +           E+ +  +   +  RG  VD  +   ++         +++E+  L
Sbjct: 558 KPQLAAKGLVSVYERLERPMVSVICRMEHRGIMVDRQILSRMSGDFAQTAAAMEEEIYRL 617

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF   GL     T++      +   +    A            
Sbjct: 618 AGG-RFTIGSPKQLGDILFGRMGLPGGAKTKSGQWSTSAQVLEELAAAGHELP------- 669

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  + +   ++         P    P   R H       T 
Sbjct: 670 -------------------RKIVDWRQVTKLKSTYTDALPGYIHPETGRVHTSYSLASTT 710

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +S+P+   I         +R+  IA+ G KL+ AD + IE RVLA +A      K
Sbjct: 711 TGRLSSSEPNLQNIPVRTPEGRKIRTAFIAAPGYKLISADYSQIELRVLAHVADIPELKK 770

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+   +  +
Sbjct: 771 AFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF---GLANQLSIPRD 827

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +K       + +     R   E       E  ++ T         R+ H      
Sbjct: 828 EAGAYIK------RYFERFPGIRDYMERTKAFCREKGYVETIFG------RRAH------ 869

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                        Y +   +N     PS R+       N R+ +
Sbjct: 870 -----------------------------YPEIRSSN-----PSVRAF------NERASI 889

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLTVHDEIV 633
           N                    +Q  + DI+   MM    A  D       ++L VHDE+V
Sbjct: 890 NAP------------------IQGSAADIIRRAMMRMEAALADSGLVDVKMLLQVHDELV 931

Query: 634 CETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667
            E P+   E    ++  +M     P+ +  +PLK + 
Sbjct: 932 FEAPEDAIERAIPVIRTVMEGAAWPARSLSVPLKVDA 968


>gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 437

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 76/454 (16%), Positives = 146/454 (32%), Gaps = 72/454 (15%)

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKEL 129
           N  ++R VL+   N  I +       +L     N +         + +    K    +++
Sbjct: 1   NLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDI 57

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181
             +     T   +          A    G Y   D  VT ++  ++ P   +        
Sbjct: 58  AGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVF 107

Query: 182 ---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +   +   G  +D A+ H  ++ + +   +L+++   +  G   +    ++
Sbjct: 108 ENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIA-GEAFNLSSTKQ 166

Query: 239 LKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           L+T LF + G+     T     +T + VL       P    +   R              
Sbjct: 167 LQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYR-------------- 212

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                            G ++         P    P+  R H    Q +T      ++DP
Sbjct: 213 -----------------GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDP 255

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++
Sbjct: 256 NLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIH 315

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A  F +    VT +QR   K +   L Y   A     ++    +        +   
Sbjct: 316 RATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLSRQLNIPRKEAQKYMD-- 370

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
              E +     +    +    E    +   G   
Sbjct: 371 LYFERYPGVLEYMERTRAQAKEQGYVETLEGRRL 404


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 97/584 (16%), Positives = 199/584 (34%), Gaps = 85/584 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVA 70
           D    G+        ++  AF ++           D    Q + E L    E+  +  + 
Sbjct: 376 DTETTGLNP--LTAELVGIAFSWEAGKGFYIPFPEDKNQAQEIIETLRPFFESEMIEKIG 433

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VL      +I +       +LA     P         +    +       EL
Sbjct: 434 QNLKYDIKVLHKY---NIQVKGKFFDSMLAHYLINPDMRHNMDVLSETYLNYTPVSITEL 490

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181
           I +  K      L  R+ P          EY   D  +T ++ +   P  ++        
Sbjct: 491 IGKKGK----NQLSMRDVP-----LEKQTEYAVEDADITYQLAQHFRPELAEASTEELFN 541

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L ++   +   G  +D     +L++ ++ +  +L  ++         +    ++L
Sbjct: 542 TIEIPLLHVLADMELEGINLDKEFLGSLSEDLNNDIKELQSKIYKEAD-QEFNIASPKQL 600

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T+T    T + VLS   K                          
Sbjct: 601 GEILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHEI---------------------- 638

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                    +R  L++ G S+         P Q   R  R H +  Q +       +++P
Sbjct: 639 ---------IRNVLEYRGLSKLKSTYVDALPLQVEERTGRVHTDYMQTVAATGRLSSNNP 689

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   +   E   L+ AD + IE R++A ++ E   ++AF+ GED+
Sbjct: 690 NLQNIPIRTERGRQVRKAFVPRDEDYTLLAADYSQIELRIIAALSEEDTMIEAFKNGEDI 749

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T ++ F+V   +VT++QR+  K +   + Y   A     +++ T L+      L++T
Sbjct: 750 HASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRTEAKELIET 806

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               + +    N+     +   ++      +G      ++  +  +   + +     +  
Sbjct: 807 YY--KTYPKLRNYMSEQIDFARDNGYVQTVLGR-----RRYLKDINGSNAIVRGAAERNA 859

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570
                 G A    K   +  ++ K  + N    ++L     LV+
Sbjct: 860 VNAPIQGSAADIIKIAMI-NIHKKLSEGNYKTKMLLQVHDELVF 902



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 19/146 (13%)

Query: 528 FEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            ++ IE       + R  +   +   +D   +  +L   R L       + +  N   R 
Sbjct: 800 AKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGRRRYL------KDINGSNAIVRG 853

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD 640
                          +Q  + DI+   M+N  K   +      ++L VHDE+V +    +
Sbjct: 854 AAERNA-----VNAPIQGSAADIIKIAMINIHKKLSEGNYKTKMLLQVHDELVFDVHKAE 908

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666
                 L      N ++   +PL  E
Sbjct: 909 LEELKSLIQSEMEN-AYKLAVPLDVE 933


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 106/639 (16%), Positives = 191/639 (29%), Gaps = 150/639 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  +  +  N  ++  +LK C  +D+        +  A + GL         
Sbjct: 411 EMLKPVLEDEAILKIGQNMKYDAKILKRC-GIDVAPCDDTMLISYALNAGL-HQHGMDAL 468

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +  S      KEL+       T + +        +        Y   D  VT  +++ 
Sbjct: 469 ADRYLSHTCIPIKELLG------TGKAMIT----FDKVPIDKATRYAAEDADVTLRLWQV 518

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L+P              E+ L  +   +   G  VD      ++     +   L+ E+  
Sbjct: 519 LKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIKVDRDTLSRMSSAFAQKMGALEAEIHE 578

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L   LF + G+      +T    T   VL     L     +V + R
Sbjct: 579 LA-GERFNVGSPKQLGEILFDKMGMEGGKKGKTGAYATGADVLEDLATLHELPARVLDWR 637

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+              P   R H    
Sbjct: 638 QL-------------------------------SKLKSTYTDSLQTHIHPETGRVHTSYQ 666

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q   +     ++DP+   I         +R   IA EGK L+  D + IE R+LA +A  
Sbjct: 667 QTGANTGRLASTDPNLQNIPVRSEEGRRIREAFIAEEGKVLLSLDYSQIELRILAHIADI 726

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF+ G+D++  T +  F V   ++T + R   K +   + Y        +     
Sbjct: 727 PALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIYGISGFGLARNLRI- 785

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                +A+ F     E  P   I+D    T              
Sbjct: 786 ------------------PRAEAQGFIDRYFERFP--GIKDYMAET-------------- 811

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                    +K   V  ++ ++      +  P   +   R    
Sbjct: 812 ---------------------TEFGKKNGYVQTLFGRR------IHTPEIDAKGPRAGFA 844

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631
            R+ +N                    +Q  + DI+   M+    A       ++L VHDE
Sbjct: 845 RRAAINAP------------------IQGTAADIIRRAMIRMPDAILGLPAKMLLQVHDE 886

Query: 632 IVCETPDTDEFNASMLYH-LMTSNPSWAK--GLPLKAEG 667
           +V E  +      + +   +M +    A    +PL  + 
Sbjct: 887 LVFEVDEAAADEVAEVARGVMETAADPAVRIDVPLVVDA 925


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 105/599 (17%), Positives = 206/599 (34%), Gaps = 83/599 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70
           D     +   A +  ++  AF ++           D      +    K   E+ ++  + 
Sbjct: 372 DTETTSLN--ALEAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPFKAFFEHPEIEKIG 429

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
           HN  ++  VL+   N DI +   +   ++A     P         A    +   +   EL
Sbjct: 430 HNLKYDLKVLR---NYDIHVKAPLFDTMIAHYLINPDMRHNMDILAETYLNYSAQSITEL 486

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----------KRLEPLS 179
           I +  K +               +     EY   D  +T ++           K LE   
Sbjct: 487 IGKKGKNQG---------TMREVSLEQQTEYAVEDADITLQLKEYFHEEMSTAKTLELYQ 537

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +DV+   +L+  +  +  KL+  +  +  G   +    ++L
Sbjct: 538 KVELPLVSVLTNMECEGINLDVSFLKSLSVTLAEDIQKLEAAIFEVA-GENFNLASPKQL 596

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T+T    T + VLS   K  P    + + R              
Sbjct: 597 GLILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHPIISDILDWRSL------------ 644

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                               +         P +  P+  R H   +Q +       +++P
Sbjct: 645 -------------------QKLQNTYVDALPNEINPKTGRVHTIYNQAVAATGRLSSNNP 685

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   I   E   L+ AD + IE R++A ++G++  L AF+  ED+
Sbjct: 686 NLQNIPIRTERGQQVRKAFIPRDENHVLMAADYSQIELRIIAALSGDEGMLSAFQNNEDI 745

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T ++ FNV   +VT++QR   K +   + Y   A    +    T LN +    L++T
Sbjct: 746 HSATASKVFNVPLEEVTREQRGNAKTVNFGIIYGVSAFGLSQ---QTNLNRSEAKELIET 802

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             A           R   ++  + A ++ ++ T   R ++  +  +S+ + +     +  
Sbjct: 803 YYATYPK------LRSYMQDQVDFARDNGYVSTVLGR-RRYLKDINSQNAIVRGAAERNA 855

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                 G A    K   + +    ++KN    ++L     LV+       + L    ++
Sbjct: 856 VNAPIQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDELVFDVPKEEINTLQEMVKK 914



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 19/136 (13%)

Query: 525 HQAFEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
               ++ IE   A   + R  +   V   +D   +  +L   R L       + +  N  
Sbjct: 793 RSEAKELIETYYATYPKLRSYMQDQVDFARDNGYVSTVLGRRRYL------KDINSQNAI 846

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETP 637
            R                +Q  + DI+   M+              ++L VHDE+V + P
Sbjct: 847 VRGAAERNA-----VNAPIQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDELVFDVP 901

Query: 638 DTDEFNA-SMLYHLMT 652
             +      M+   M 
Sbjct: 902 KEEINTLQEMVKKEME 917


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 98/643 (15%), Positives = 181/643 (28%), Gaps = 156/643 (24%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D      MP     ++LK  LE+  +  +  N  ++  +        I I     T++L+
Sbjct: 398 DLAEG-QMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFAR---NGIDITPIDDTMLLS 453

Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +G          + +    +    K L+            +DR              
Sbjct: 454 YALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSG----KSAITFDR------VPIDDATP 503

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++++ +P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 504 YAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQNGIKVDRDTLSRMSN 563

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L  G   +    ++L   LF +  L      +T    T   +L  
Sbjct: 564 AFSQKMAALEAEIHELA-GESFNVGSPKQLGEILFDKLSLPGGKKGKTGAYATGADILED 622

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R                                 S+          
Sbjct: 623 LATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQ 651

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
               P   R H    Q   +     +SDP+   I         +R   +A EG  L+  D
Sbjct: 652 EHIHPETGRVHTSYLQTGANTGRLASSDPNLQNIPVRSEEGRRIREAFVAEEGNVLLSLD 711

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +AG     +AF  G D++  T +  F+V   ++T + R   K +   + 
Sbjct: 712 YSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAINFGVI 771

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y        +                          +A+ F     E  P          
Sbjct: 772 YGISGFGLARNLRI-------------------PRGEAQGFIDRYFERFP---------- 802

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                     RQ          +    + QT+   K                       +
Sbjct: 803 --------GIRQYMDDTVNFAKD--HGYVQTLFGRK-----------------------I 829

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616
             P   +   R     R+ +N                    +Q  + D++   M+     
Sbjct: 830 HTPEIAAKGPRASFAKRAAINAP------------------IQGTAADVIRRAMVRMPDA 871

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658
                  ++L VHDE++ E P+   +   S+   +M      A
Sbjct: 872 IAHLPARMLLQVHDELLFEVPEDHVDETISVAREIMEGAADPA 914


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 91/583 (15%), Positives = 186/583 (31%), Gaps = 80/583 (13%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68
            ID    G      D  ++  +F   ++         +      +    +   EN     
Sbjct: 382 SIDTETTGTEP--MDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKSMK 439

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124
           V  N  ++  +L+   N  + +   +   +LA     P     +  + E  L   +  ++
Sbjct: 440 VGQNIKYDMIILQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIYLHYQTIHID 496

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179
           E                   R+ P           Y   D  VT ++   LE        
Sbjct: 497 E-------LIGARGKNQKNMRDLPPED-----VYRYACEDADVTLKLKNVLEKELKEQGA 544

Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   I   G  +D       +Q   V   ++++E+  +  G   +  
Sbjct: 545 EHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNIS 603

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   LF +  + +E   +T   + +                      ++   L + 
Sbjct: 604 SAKQVGEVLFDKLKI-VEKAKKTKTGQYV----------------------TSEEVLQSY 640

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
               +  G++   L++ G  +         P    PR  R H   +Q +T      +S+P
Sbjct: 641 RSKHDIIGKI---LEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAVTATGRLSSSNP 697

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R   I   G +   AD + IE R++A ++ ++  + AF +G D++
Sbjct: 698 NLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIH 757

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A+ + +    VT D R   K     + Y         +A   G++      L+   
Sbjct: 758 AATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVF---GLAERMGVSRQEAKELIDG- 813

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                + +     +   +   + A E+ ++ T   R K+     +SR   +     +   
Sbjct: 814 -----YFETYPQVKEYMDKSIQVARENGYVETIFHR-KRFLPDINSRNGVVRGYAERNAI 867

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570
                G A    K      +Y +    NL   ++L     L +
Sbjct: 868 NAPIQGSAADIIKVAMAH-IYQRFQAYNLKAKMILQVHDELNF 909


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 101/614 (16%), Positives = 196/614 (31%), Gaps = 91/614 (14%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALE 62
           D ET    DL          D  ++  AF +            D      +    KE LE
Sbjct: 368 DTET---TDLEPT-------DAELVGLAFSYVAGEAYYVPFPADQKEAQKIADEFKEVLE 417

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121
           N D+T +  N  ++  V++   N  + +   +   +LA     P         A    + 
Sbjct: 418 NEDITKIGQNLKYDIQVMR---NYGVRVQGKMFDTMLAHYLLDPETRHNMDVMAENYLNY 474

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177
                 +LI +  KG     + D              EY   D  +T ++   LE     
Sbjct: 475 SPVSITDLIGK--KGVKQGNMRD-------VPVEDVVEYAGEDADITLQLKHILEKEIKE 525

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                 L   E+ L Y+   +   G  +D      +++ ++    +  +++  L  G   
Sbjct: 526 NNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIFELA-GQEF 584

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    ++L   LF +  L      T+T    T + +LS        A ++   R      
Sbjct: 585 NIASPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKLANEHEIADKILEFREY---- 640

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                       +         P     +  R H +  Q +   
Sbjct: 641 ---------------------------QKLKSTYVDALPKLISKKDGRVHTDYRQAVAAT 673

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I         +R   +   E  +L+ AD + IE R++A  + ++  ++
Sbjct: 674 GRLSSNNPNLQNIPIRTEKGRLIRKAFVPRDENYQLMAADYSQIELRIMAAFSQDEAMME 733

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ G D++ TT A+ F V    V    R   K +   + Y   A     +A    ++  
Sbjct: 734 AFKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKEVNFGIIYGISAF---GLAQNLNISRT 790

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             + ++K       +           E   E A  + ++ T   R K+  R  +SR   +
Sbjct: 791 EASDIIKA------YFKEFPRVHDYMEKVKEDARANEYVTTILGR-KRWLRDINSRNQTI 843

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                +        G A    K   + +  +M+K+     +++     L++    +    
Sbjct: 844 RGYAERNAINAPIQGSAADMIKIAMINIHKWMEKENLKSKMIMQVHDELIFDAHKDEIDK 903

Query: 580 LNTTTRQLTREYTY 593
           L      L +    
Sbjct: 904 LKDKVVDLMKNAME 917


>gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 101/579 (17%), Positives = 181/579 (31%), Gaps = 81/579 (13%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           E+  +  K  T + +          A    G+Y   +  +T  + +  E           
Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVGVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +   L Y   A     +A   G++       V    A
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E     A E  F+ T   R +      +++   L     +     
Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839

Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              G A    K+  V +    ++   +  ++L     LV
Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878


>gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
 gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
          Length = 944

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 114/642 (17%), Positives = 192/642 (29%), Gaps = 162/642 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+     V  +  ++  V     N  I +      T++ +              A ++ 
Sbjct: 418 LEDETRGKVGQHLKYDAHV---FANHGIALRGITHDTMLQSYVLASHRNHGMDALAERVL 474

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
             K    +E+    C     +  +D        A     EY   D  +T  + + L P  
Sbjct: 475 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 524

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     + Q +   G  VD       +  +      L+QE  +L  G
Sbjct: 525 AEDDKLRYVYERIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLALEQEAYALA-G 583

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F +  L +   T     +T + VL    +  P    +        
Sbjct: 584 QPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 636

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    + G ++         P    P+  R H    Q   
Sbjct: 637 ------------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 672

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   +A  G  +V AD + IE R++A ++G+   +
Sbjct: 673 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLM 732

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A     +AS  G+  
Sbjct: 733 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 789

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       +  K    +  +R   
Sbjct: 790 --------------------------------------------DAAKLYIDRYFARYPG 805

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +   + +            IA +R  V  V+              GR L   D+      
Sbjct: 806 VARYMDE---------TRQIAHERGYVETVF--------------GRRLWLPDIN----G 838

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDI----V 625
            N   RQ               +Q  + D++   M+          NA K G  +    V
Sbjct: 839 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLV 893

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P  +       L  LM    S    +PL AE
Sbjct: 894 MQVHDELVLEVPQDELARVRERLPELMCGVAS--LSVPLVAE 933


>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
 gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
          Length = 941

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 183/634 (28%), Gaps = 154/634 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+     +  N  ++  V          + +   T++ +              A +L +
Sbjct: 423 LEDDSKPKLGQNIKYDIHVFANHGVTLCGVAQ--DTMLESYVLASHRNHGMDSLAERLLN 480

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
            K    +E+    C     +  +D      +       EY   D  VT  + +++ P   
Sbjct: 481 LKTITYEEV----CGKGASQIGFD------QIDLARATEYAAEDADVTLRLHRKMFPQVS 530

Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  +  + Q I   G  +D       +  +      L+Q       G 
Sbjct: 531 AAAGLRRVYEEIEIPVSVVLQKIERNGVLIDAERLAAQSAELGQRMLSLEQAAYD-AAGQ 589

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   LF +  L +   T     +T + VL    +  P    +         
Sbjct: 590 PFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL-------- 641

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                   + G ++         P    P   R H    Q    
Sbjct: 642 -----------------------DYRGLAKLKSTYTDKLPKMVNPNTGRVHTSYGQATAV 678

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +++P+   I         +R   IAS G  +V AD + IE R++A ++G++  L+
Sbjct: 679 TGRLASTEPNLQNIPVRTEEGRRIREAFIASPGSVIVSADYSQIELRIMAHISGDENLLR 738

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  GED++  T +  F V    V+ +QR   KV+   L Y   A     +AS  G+   
Sbjct: 739 AFANGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMSAF---GLASNLGIERE 795

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                         K    +   R   +
Sbjct: 796 AA--------------------------------------------KHYIDRYFMRYPGV 811

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSY 579
              +    +   E G       RR               L LP        R     R+ 
Sbjct: 812 AQYMEDTRQTAREQGYVETVFGRR---------------LWLPDINGGSGPRRQAAERAA 856

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
           +N                     Q  + D++   M+         K     ++ VHDE+V
Sbjct: 857 INAPM------------------QGTAADLIKLSMIAVQGWLERDKLQTRQIMQVHDELV 898

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P  + +   + L  LM S       +PL AE
Sbjct: 899 LEVPQDELDVVKTRLPELMCSVAQ--LRVPLVAE 930


>gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L]
 gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L]
          Length = 996

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 117/639 (18%), Positives = 208/639 (32%), Gaps = 139/639 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG 113
           + L+  LE++D   V  NS F+R VL  C  + +     +   +LA     P  + K   
Sbjct: 459 ESLRPILESSDYPKVLQNSKFDRLVL-RCNGIQL--AGVVFDTMLASYVLNPETSHKLSD 515

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L     + +   +L+         + + D + P          +YC  D   T  I  
Sbjct: 516 LGLHYLGIEAQSYNDLV------PKGKTIRDLDIPT-------VADYCGMDAYTTFGIVF 562

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +L             L   EQ L  +   +  +G  +D       +Q ++ +   + Q+ 
Sbjct: 563 KLREELEQIPALQQLLLEVEQPLEPVLAEMEYQGIRIDKDYLQQFSQELEKDLVAIKQQA 622

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVF 277
                G   +    ++L   LF + GL      +T     T   +L+  +   P    + 
Sbjct: 623 YQDA-GEEFNLGSPKQLSQLLFEKLGLDRRKSRKTKTGYSTDATILAKLQGDHPVVDAIV 681

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                                 S+         P        R H 
Sbjct: 682 EYRSL-------------------------------SKLKSTYVDALPALMRSDTKRVHT 710

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           + +Q +T      +S P+   I      S  +R   I   G  LV AD + IE R+LA +
Sbjct: 711 DFNQTVTTTGRLSSSSPNLQNIPIRTDFSRQIRKGFIPESGWLLVSADYSQIELRILAHL 770

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + E   ++A++T  D++  T    F+     +T ++R +GK++   + Y  GA   Q+ A
Sbjct: 771 SQEPVLVEAYQTQADVHTLTAQMLFDK--EDITAEERRLGKIINFGVIYGMGA---QRFA 825

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               ++       +   +       A        E   + AI   ++ T   R +     
Sbjct: 826 REAKVSTAEGKEFIDRLNQRYPLVFA------YLEETKKKAIAQGYVETILGRRRYFSFG 879

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            +S                         R+ +  PL           + L   +S+   D
Sbjct: 880 GNS------------------------LRRLQGKPLD---------QIDLDKLKSINPYD 906

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTV 628
            G+ R+  N+                   +Q  S DI+   M+       K    ++L V
Sbjct: 907 AGSLRAAANSP------------------IQGSSADIIKIAMIKLYQELQKYKARLLLQV 948

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE++ E P  + E     +   M S       +PL  E
Sbjct: 949 HDELIFEIPPDEWEELQLKIRETMESAVE--LTVPLVVE 985


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 90/654 (13%), Positives = 176/654 (26%), Gaps = 158/654 (24%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D      MP      +LK  LE+  +  +  N  ++  +        I +     T++++
Sbjct: 400 DLADG-QMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFAR---RGIDVAPIDDTMLMS 455

Query: 101 RSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
            +             + +  +      K L+                    R        
Sbjct: 456 YAMHAGQHGHGMDTLSERYLNHTPIPIKPLL----------GTGKSAITFDRVPIDDAVA 505

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++  +P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 506 YAAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSN 565

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L  G   +    ++L   LF + G+      +T    T   +L  
Sbjct: 566 AFAQKMAGLEAEIHELA-GQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILED 624

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                     V + R                                 S+          
Sbjct: 625 LATEHALPGLVLDWRQL-------------------------------SKLKSTYTDALQ 653

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
                   R H    Q   +     ++DP+   I         +R   +  EG  L+  D
Sbjct: 654 DHINAETGRVHTSYVQTGANTGRLASTDPNLQNIPIRSEEGRRIREAFVPEEGNVLLALD 713

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +AG     +AF  G+D++  T +  FNV   ++T D R   K +   + 
Sbjct: 714 YSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVI 773

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +A    +        +                                  
Sbjct: 774 YGISGF---GLARNLRIPRAEAQGFID--------------------------------- 797

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                      +   R   +   + +      E+G       R+               +
Sbjct: 798 -----------RYFERFPGIRRYMDETVAFAKEHGHVQTLFGRK---------------I 831

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616
             P   +   R     R+ +N                    +Q  + D++   M+     
Sbjct: 832 HTPEISAKGPRAGFAKRAAINAP------------------IQGTAADVIRRAMIRMPAA 873

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
                  ++L VHDE++ E P+   E        +M +    A    + L  + 
Sbjct: 874 IAHLPARMLLQVHDELLFEVPEAAVEDTIETASQVMETAADPAVHLDVKLVVDA 927


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score =  266 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 91/583 (15%), Positives = 186/583 (31%), Gaps = 80/583 (13%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68
            ID    G      D  ++  +F   ++         +      +    +   EN     
Sbjct: 389 SIDTETTGTEP--MDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKSMK 446

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124
           V  N  ++  +L+   N  + +   +   +LA     P     +  + E  L   +  ++
Sbjct: 447 VGQNIKYDMIILQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIYLHYQTIHID 503

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179
           E                   R+ P           Y   D  VT ++   LE        
Sbjct: 504 E-------LIGARGKNQKNMRDLPPED-----VYRYACEDADVTLKLKNVLEKELKEQGA 551

Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   I   G  +D       +Q   V   ++++E+  +  G   +  
Sbjct: 552 EHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNIS 610

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   LF +  + +E   +T   + +                      ++   L + 
Sbjct: 611 SAKQVGEVLFDKLKI-VEKAKKTKTGQYV----------------------TSEEVLQSY 647

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
               +  G++   L++ G  +         P    PR  R H   +Q +T      +S+P
Sbjct: 648 RSKHDIIGKI---LEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAVTATGRLSSSNP 704

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R   I   G +   AD + IE R++A ++ ++  + AF +G D++
Sbjct: 705 NLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIH 764

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A+ + +    VT D R   K     + Y         +A   G++      L+   
Sbjct: 765 AATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVF---GLAERMGVSRQEAKELIDG- 820

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                + +     +   +   + A E+ ++ T   R K+     +SR   +     +   
Sbjct: 821 -----YFETYPQVKEYMDKSIQVARENGYVETIFHR-KRFLPDINSRNGVVRGYAERNAI 874

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570
                G A    K      +Y +    NL   ++L     L +
Sbjct: 875 NAPIQGSAADIIKVAMAH-IYQRFQAYNLKAKMILQVHDELNF 916


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 200/583 (34%), Gaps = 83/583 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENTDVTIVA 70
           D    G+        ++  AF ++           D    Q L E      E+  +  + 
Sbjct: 378 DTETTGLNP--LTAELVGIAFSWEASKGFYIPFPEDQDQAQELIEQLRPFFEDEKIEKIG 435

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VL+     ++ I       +LA     P         A    +       EL
Sbjct: 436 QNLKYDIKVLRKY---NLIIKGAYFDTMLAHYLINPDMRHNMDVLAETYLNYTPISITEL 492

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I +  K      L  R  P          EY   D  +T ++    +P           +
Sbjct: 493 IGKKGK----NQLSMRQVPI-----EKQTEYAVEDADITYQLASHFKPELKDAKTEELFN 543

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +DV   ++L++ ++ +   L+  +     G   +    ++L
Sbjct: 544 DIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLETSIYE-AAGEEFNIASPKQL 602

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T+T    T + VLS   +                          
Sbjct: 603 GEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEI---------------------- 640

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                    ++  L++ G ++         P Q      R H +  Q +       +++P
Sbjct: 641 ---------IKNILEYRGLAKLKSTYIDALPDQVEESTGRVHTDYMQTVAATGRLSSNNP 691

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   +   E   L+ AD + IE R++A ++ E   ++AF+ GED+
Sbjct: 692 NLQNIPIRTERGRQVRKAFVPRDENYTLLAADYSQIELRIIAALSDETTMIEAFKNGEDI 751

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T ++ FNV   QVT++QR+  K +   + Y   A     +++ T L+      L+  
Sbjct: 752 HASTASKVFNVPLDQVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGESKELIDA 808

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 +E      ++M E   + A ++ ++ T   R ++  +  +SR + + +   +  
Sbjct: 809 -----YYETYPKLKKYMSE-LVDFARDNGYVQTVLGR-RRYLKDINSRNAVVRSAAERNA 861

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570
                 G A    K   + +       N    ++L     LV+
Sbjct: 862 VNAPIQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVHDELVF 904



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 20/132 (15%)

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           K+    LV   +D   +  +L   R L      N+R   N   R                
Sbjct: 817 KKYMSELVDFARDNGYVQTVLGRRRYL---KDINSR---NAVVRSAAERNA-----VNAP 865

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654
           +Q  + DI+   M+N  K          ++L VHDE+V +   T+ E   +++   M + 
Sbjct: 866 IQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVHDELVFDAHKTELEEVRALIKTEMEN- 924

Query: 655 PSWAKGLPLKAE 666
            +++  +PL  E
Sbjct: 925 -AYSLAVPLDVE 935


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/582 (17%), Positives = 199/582 (34%), Gaps = 82/582 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---NTDVTIVAH 71
           D    G+   A +V +I  AF ++           D    Q + E       +++  + H
Sbjct: 413 DTETTGLK--ALEVELIGIAFSYETGKGYYVSFPEDQAETQRILEDFRPFFESEIEKIGH 470

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELI 130
           N  ++  VL       +P+   +   ++A     P         A    + +     ELI
Sbjct: 471 NLKYDIKVLSTY---KMPVKGKLFDTMIAHYLINPDMRHNMDVLAETYLNYQPISIAELI 527

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----------EPLSS 180
            +  K      L  R+ P   +      EY   D  +T ++ +            +  + 
Sbjct: 528 GKKGK----NQLSMRSVPLKEQ-----TEYAVEDADITFQLKQLFTGELENGNVTKLFND 578

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L  +   +   G  V+      L+  +  +  +L++ +     G   +    ++L 
Sbjct: 579 IELPLVSVLTAMEIEGINVNTDFLKELSVALTADIDRLEKSIYEQA-GEEFNIASPKQLG 637

Query: 241 TWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
             LF +  L      T+T    T + +LS   K       +   R               
Sbjct: 638 IVLFEKMELVKKPKKTKTGQYATGEDILSYLAKEHDIIKDIQEYRQY------------- 684

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                              +         P +  P+  R H +  Q +       +++P+
Sbjct: 685 ------------------KKLQSTYVDALPNEVNPKTGRIHTQYMQAVAATGRLSSNNPN 726

Query: 356 PLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         VR   +   E   L+ AD + IE R++A ++ E+  + AF+ GED++
Sbjct: 727 LQNIPIRTARGREVRKAFVPRDENHVLLAADYSQIELRIIAALSEEENMINAFKNGEDIH 786

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            +T A+ FNV   +VT+DQR+  K +   + Y   A     +++ T L+ +    L+ T 
Sbjct: 787 ASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVYGVSAF---GLSNQTDLSRSEAKELIDTY 843

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                  +     +       + A E  ++ T   R ++  +  +SR + + N   +   
Sbjct: 844 Y------ETYPKLKAYMSAQVDFAREHGYVETVLNR-RRYLKDINSRNAVVRNGAERNAV 896

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
                G A    K   + +    + +     ++L     LV+
Sbjct: 897 NAPIQGSAADIIKLAMINIQKRFEKEGFRSRMLLQVHDELVF 938


>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
 gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
          Length = 984

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/620 (16%), Positives = 189/620 (30%), Gaps = 99/620 (15%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLK 58
           +D ET S   +             ++  +  F           H          +   L+
Sbjct: 413 LDTETTSLEPMK----------AQLVGISIAFGAGDAAYIPVAHTFAEQLDWTDIKSSLQ 462

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA 115
             LEN  +  +  N  +++ V     N  I +       +LA     + L   L  + E 
Sbjct: 463 PFLENPQLGKIGQNMKYDQHV---FANHGIALQGISGDAMLASYIVESHLGHGLDELSER 519

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L+L +   E         C     +       P          EY   D      I + 
Sbjct: 520 WLQLPTITYES-------LCGKGAKQI------PFADVPLDKAAEYACQDADFALRIEQH 566

Query: 175 LEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           L               E  +  +   +   G  +D       +  +  E  +L+ E  +L
Sbjct: 567 LRTQMDDKQLAMYQELELPVAQVLFAMERNGVFIDSNELAQQSAQLGKELWQLENEAFAL 626

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNN 279
             G   +    ++L+  LF + GL  + + +T      T + VL       P    +  +
Sbjct: 627 A-GKPFNLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDESVLEKLADDFPLPKLILQH 685

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R  A                               +         P   LP   R H   
Sbjct: 686 RSLA-------------------------------KLKSTYTDKLPEMILPATGRVHTNY 714

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       +++P+   I         VR    A EG+ +V AD + IE R++A ++G
Sbjct: 715 AQAVAITGRLASNNPNLQNIPIRTEQGRRVRRAFCAPEGQMMVSADYSQIELRIMAHLSG 774

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +     AF+  ED++  T A  F V P  +T +QR   K +   L Y   +     +A  
Sbjct: 775 DPTLQAAFQNNEDVHRRTAAEVFGVPPEHITAEQRRYAKTINFGLIYGMSSF---GLAKA 831

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++  +    +K   A               E   E A    ++ T   R +      H
Sbjct: 832 LGIDNMSAEMFIKRYFARYT------GVAEYMERTKEQARSLGYVETLFGR-RLYLPDIH 884

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                       A    ++   + + ++        +  ++++  L++     LV +   
Sbjct: 885 GSAIRRAAAERAAINAPMQGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPE 944

Query: 575 NNRSYLNTTTRQLTREYTYG 594
           +  +++     Q   +   G
Sbjct: 945 DELAHIKAQLPQWMSDVGEG 964


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/606 (15%), Positives = 187/606 (30%), Gaps = 90/606 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVL 57
             L +D ET +  D  +           ++  +F  ++          D         + 
Sbjct: 348 KVLSLDTET-TSTDTMQA---------ELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL 116
           +   EN ++  V  N  ++  VL       I I   +   ++A     P         A 
Sbjct: 398 RPLYENENILKVGQNIKYDYEVLAQY---GIDIKGKMFDTMIAHYLIQPELHHNMDYMAE 454

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L   K     ELI    KG+  + + D +  +         EY   D  +T +++K LE
Sbjct: 455 TLLGYKTVHIDELIG--AKGKHQKNMRDLSPTD-------IYEYASEDADITLQLYKVLE 505

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P   +          E  L  +   +   G C+D       ++I      + +  +    
Sbjct: 506 PKLKEVNAEDLFWKIEMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALIYEQA 565

Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +   +     T+T    T + VL S +   P    +   R 
Sbjct: 566 S-EKFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEASAPIVGNILKYR- 623

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G  +         P     R    H   +Q
Sbjct: 624 ------------------------------GIKKLLSTYIDALPKLINKRTGHIHTSFNQ 653

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R C I         AD + IE R++A ++ ++
Sbjct: 654 ALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPKCLFFSADYSQIELRIMAHLSQDE 713

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF +G D++  T A+ ++V   +V+  QR   K     + Y         +A   G
Sbjct: 714 NMMEAFRSGHDIHRATAAKIWHVPMEEVSDAQRKKAKQANFGIIYGITTY---GLAQRMG 770

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +       L+      E +       +   E   + A E  +  T   R ++     +S+
Sbjct: 771 IPNGEAKELI------EGYFKTFPSVKAFMEKAKQTAREKGYAETLFNR-RRYLSDINSK 823

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGN 575
              +     +        G      K   + +    +++     ++L     L +     
Sbjct: 824 NGTVRGFAERNAINAPIQGTEADIIKVAMIRIWERFRRENIRSKMILQVHDELNFSVFPE 883

Query: 576 NRSYLN 581
            +  + 
Sbjct: 884 EKEKVE 889


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/649 (16%), Positives = 199/649 (30%), Gaps = 143/649 (22%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D    P +P       LK  LE+  +  +  N  F+ TVL+      I +     T++++
Sbjct: 437 DAGGQPQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQH---GIQLKGLDDTMLMS 493

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK---PNHREAWRLF 157
            +               +    M+E  EL     K  +   +  + K      +      
Sbjct: 494 YALDA-----------GVHGHGMDELSEL-HLGHKPISFAEVAGKGKAQITFDQVPVDRA 541

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTL 207
             Y   D  VT  ++  L+P    E+           L  +   +   G  VD A+   L
Sbjct: 542 TAYAAEDADVTLRLWHILKPRLVAERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARL 601

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
           +     +  + + E+  L  G   +    ++L   LF +  L     T+T      +   
Sbjct: 602 SGDFSQKMAQYEDEIYELA-GERFNIGSPKQLGEILFDKQSLEGGRKTKTGAWSTDADTL 660

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +           R                           L + G S+         P  
Sbjct: 661 EALAAKGHELPQR--------------------------VLDWRGLSKLKSTYTDALPEY 694

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
             P   R H       T      +++P+   I         +R+  +A +G  L+ AD +
Sbjct: 695 INPETGRIHTCYSLASTSTGRLASTEPNLQNIPVRTEDGRKIRTAFVAEKGNLLISADYS 754

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA +A  +   KAF  G D++  T +  F V    +    R   K +   + Y 
Sbjct: 755 QIELRLLAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYG 814

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             A     +A+  G+                                             
Sbjct: 815 ISAF---GLANQLGIPRQEA---------------------------------------- 831

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                  + ++   +            +   +     A K   V  ++ ++      + L
Sbjct: 832 -GEYIDRYFKRFPGI------------RAYMDDTRDFAHKNGYVETIFGRR------IHL 872

Query: 563 PSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
           P+  S          R+ +N   +         G   + I +A+ R       +   K  
Sbjct: 873 PAINSKNPAEKSFMERAAINAPIQ---------GSAADIIRRAMIR---MPQALADAKLA 920

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWAKGLPLKAEG 667
             ++L VHDE++ E P+ + E  + ++  +M   + P+ A  +PL  + 
Sbjct: 921 ARMLLQVHDELIFEVPEKEAEKTSKVVSRIMSDAAAPAVALTVPLDVDA 969


>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
 gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
          Length = 929

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/639 (17%), Positives = 184/639 (28%), Gaps = 149/639 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
           +VLK  LE+  V  +  N  ++   L       I +H    T++++ +            
Sbjct: 402 KVLKPMLEDPAVLKIGQNIKYD---LSVFAQHKIHVHPIDDTMLISFALNAGIHGHGMDD 458

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            + +    K    K++                 K   + A     EY   D  VT  +++
Sbjct: 459 LSERYLGHKPITFKDVA----------GTGKAQKSFAQVALDKATEYAAEDADVTLRLWQ 508

Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P    EQ           L  +   +   G  VD  +   L+   +     L+ E  
Sbjct: 509 ALKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVKVDRDMLSRLSADFNQRMAALEAEAH 568

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G   +    ++L   LF E  L     T+T                          
Sbjct: 569 EQA-GRSFNIGSPKQLGEILFDEMNLPGGKKTKTG------------------------- 602

Query: 284 SRSAVLKLNTLVEAMNSDGRL--RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              A +    ++E + +DG    R  + +   S+               +  R H     
Sbjct: 603 ---AWVTDGDVLEGLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMM 659

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    ++DP+   I         +R   IA EG  LV AD + IE R+LA MA   
Sbjct: 660 AGAQTGRLSSTDPNLQNIPVRTEEGRKIRQAFIAEEGNVLVSADYSQIELRILAHMADIP 719

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF+ G D++  T +  F V    +    R   K +   + Y         +    G
Sbjct: 720 ALKQAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINFGIIYGISGF---GLGRQLG 776

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +        +KT                                               R
Sbjct: 777 IPSGEANQYIKTYF--------------------------------------------ER 792

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              +   + +  E     G    A  R+               + LP  +S         
Sbjct: 793 FPGIRQYMDETKEFARATGFVKTAFGRK---------------IHLPDIKSKGPARSFAE 837

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHD 630
           R  +N                    +Q  + DI+   M+   +A         ++L VHD
Sbjct: 838 RQAINAP------------------IQGSAADIIKRAMIRMPEALAEAGLKAQMLLQVHD 879

Query: 631 EIVCETPDTDEFNASMLYHL-MTSN--PSWAKGLPLKAE 666
           E+V E P+ +      L    M +   PS    +PL  E
Sbjct: 880 ELVFECPEKEAEKLIKLVQKTMAAADGPSLRLSVPLVVE 918


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 108/606 (17%), Positives = 207/606 (34%), Gaps = 84/606 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEALENTDVTIV 69
           D    G+        ++  AF ++       P+   D     V+   LK   E+  +  V
Sbjct: 378 DTETTGLDP--LTAELVGIAFSWEKGKGFYLPIPE-DREAAQVIVDQLKPFFESASIEKV 434

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
             N  ++  VL       + +   +   +LA     P           L+   +    + 
Sbjct: 435 GQNLKYDIKVLDKY---GVDVKGPMFDTMLAHYLINP---DMRHNMDVLAETYLNYTPQS 488

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I      +    L  R             EY   D  +T ++ +   P            
Sbjct: 489 IVELIGKKGKNQLSMR-----DVDLEKQKEYAVEDADITLQLKEHFTPELASAGTDKLFK 543

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +D     +L+  ++ + T+L++++  +  G   +    ++L
Sbjct: 544 DIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYEVA-GEEFNIGSPKQL 602

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T+T    T + VLS   K                          
Sbjct: 603 GVILFEKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHAI---------------------- 640

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                    ++  L + G S+         P Q   +  R H    Q +       ++DP
Sbjct: 641 ---------IQNVLDYRGLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLSSTDP 691

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   I   E   L+ AD + IE R++A ++ E+  + AF++GED+
Sbjct: 692 NLQNIPIRTERGRQVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMIAAFQSGEDI 751

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T A+ FNVA   VT++QR+  K +   + Y   A     +++ T L+      L+ T
Sbjct: 752 HASTAAKVFNVALEDVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGEAKELIDT 808

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             A      A        ++  + A E+ ++ T   R ++  +  +S  + +     +  
Sbjct: 809 YYATYPKLKA------YMQDQVDFARENGYVETVLGR-RRYLKDINSSNAVVRGAAERNA 861

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                 G A    K   + +    ++ N    ++L     LV+ D+ N+         Q 
Sbjct: 862 VNAPIQGSAADIIKIAMINIHKKFEEMNCKSKMLLQVHDELVF-DIHNDELEDMKKLIQG 920

Query: 588 TREYTY 593
             +  Y
Sbjct: 921 EMQNAY 926


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 119/692 (17%), Positives = 208/692 (30%), Gaps = 162/692 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-----FGFDDHPVELWDCVHDPVMP-----Q 55
           ID ET + +D    G+      V + L A     +      +E         +P      
Sbjct: 318 IDTET-TSLDARTAGL------VGISLCAELDRAWYIPLAHIEATGTPVPGQLPISEVMA 370

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           VL+  L   D+  V HN  ++ TVLK    ++I               G    L  +   
Sbjct: 371 VLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLADTMVAAHLLEKGRTLKLDDLCAE 430

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           + L    +    E++A             R       A +    Y   DV     +++  
Sbjct: 431 IGLE---LTSFAEVVAE----------DKRADAFAYVALKEACHYSCEDVYGALSLWQDF 477

Query: 176 -EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            E LS K         E  +  +   +   G C+D  +   L    + +  +L   +   
Sbjct: 478 GEKLSDKALDGLFYDVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQIGELAATIYQ- 536

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF E GL     T+T     +   +KL  Q             
Sbjct: 537 EVGHEFNISSPKQLGVILFEELGLPHGRKTKTGFSTDVKVMEKLASQHPVPAL------- 589

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                 L++   ++              P   R +   +Q IT 
Sbjct: 590 ---------------------ILKYRTIAKLKSTYVDKLLLLKNPETGRIYTSFNQTITA 628

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +S+P+   I       + +R   +   GK  + AD + I+ RVLA  +G+    +
Sbjct: 629 TGRLSSSNPNMQNIPIRMEEGNRIRRAFVPEAGKVFLAADYSQIDLRVLAHYSGDDALTR 688

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F+V+   V  + R + K +   + Y   A     +A   G+   
Sbjct: 689 AFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVYGMSAF---GLAQQLGIGRK 745

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +        +       +    +  E   E  +                      
Sbjct: 746 EAQRFID------RYFHLYAGVKQFMIDIVEQTRERGY---------------------- 777

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             +  +RR VP +   K+K          R          R  +
Sbjct: 778 ---------------ATTLLGRRRAVPDID-AKNKGM--------REFA------ERMAI 807

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
           NT                   +Q  + DI+   M+   K       G  ++L +HDE+V 
Sbjct: 808 NTP------------------IQGTAADIIKCAMIAVEKKLAAAGLGAKMLLQIHDELVF 849

Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
           E  + +      ++   M S       +PL A
Sbjct: 850 EVSEAELAETRVVVQEAMESALQ--LDVPLVA 879


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 118/651 (18%), Positives = 217/651 (33%), Gaps = 150/651 (23%)

Query: 47  CVHDPVMPQV--------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
                ++PQ+        LK  LEN  +  +  N  ++  V+K     DI +  +  T++
Sbjct: 424 LAGGRIVPQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---DIVMRSFDDTML 480

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           L+       AL+A      +        G + I    K  T+     +     +   +  
Sbjct: 481 LS------YALEAGISTHGIDVLSERWLGHKPITY--KDLTYNGK--KIVSFAQIDLKQA 530

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTL 207
             Y   D  +T  +++ L+P    ++           L  +   + +RG  VD  +   L
Sbjct: 531 TLYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRL 590

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVL 263
           +  +      L++E+  L  G   +    ++L   LF + GL     T+    +T  + L
Sbjct: 591 SGELAQAALNLEEEIYQL-VGERFNIASPKQLGDILFGKMGLPGGAKTKNGQWSTSAQTL 649

Query: 264 SSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
                       ++ + R  A                               +       
Sbjct: 650 EELATEGHILPRKIVDWRQLA-------------------------------KLKSTYTD 678

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
             P   L +  R H       T      +S+P+   I         +R+  IASEG  L+
Sbjct: 679 ALPSYILTKTGRVHTNYSLATTSTGRLSSSEPNLQNIPARTAEGRKIRAAFIASEGHILL 738

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA  A      +AF  G+D++  T ++ F VA   +  D R   K +  
Sbjct: 739 SADYSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINF 798

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y   +     +A+  G++                     N+ R   E  P   IED 
Sbjct: 799 GIIYGISSF---GLANQLGISRKEAG----------------NYIRLYFERFP--GIEDY 837

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
              T      K + + H  V  ++                    +R   P +        
Sbjct: 838 MEKT------KMFARHHGYVETIF-------------------GRRIHYPEIKTAN---- 868

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                P  R+       N R+ +N   +         G   + I +A+   I  E  +  
Sbjct: 869 -----PQIRAF------NERAAINAPIQ---------GSAADIIRRAM---IQVENALEK 905

Query: 618 TKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLM--TSNPSWAKGLPLKA 665
            K    ++L VHDE++ E   ++    A ++  +M   + P+ +  +PL+ 
Sbjct: 906 EKLSAKMLLQVHDELIFEVSKSESTKTAILIKKVMENATMPALSLSVPLEV 956


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/532 (17%), Positives = 165/532 (31%), Gaps = 82/532 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           L+  LE+  V  +  N  ++  V+       I +       +L     N +         
Sbjct: 406 LQPLLEDEGVAKIGQNLKYDIGVMARY---GITLRGVAFDTMLESYVLNSVAGRHDMDSL 462

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +                EY   D  VT ++ +R
Sbjct: 463 AARHLDHKTITFEEIAGKGKGQLTFNQI----------PLEQAAEYAAEDADVTLQLHQR 512

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P    E             L  +   +   G  +D A+    +Q + V    L+Q+  
Sbjct: 513 LWPTLEGESGPSHIFRDIDMPLIPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQQAH 572

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           S   G   +    ++L+  LF +  L +   T     +T + VL+          QV   
Sbjct: 573 SEA-GEPFNLSSTKQLQAILFEKQQLPVLKKTPGGAPSTNEEVLAELADQGYALPQV--- 628

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L++   ++         P    P   R H   
Sbjct: 629 ---------------------------ILEYRTLAKLKSTYTDKLPQMVNPLTGRVHTSY 661

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I         +R   IA  G ++V AD + IE R++A ++G
Sbjct: 662 HQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHLSG 721

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    V+ DQR   K +   L Y   A     +A  
Sbjct: 722 DKGLLAAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAF---GLARQ 778

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +      E +     +    ++   +    +   G           + +
Sbjct: 779 LNIGRGEAQRYMD--LYFERYPGVLAYMERTRQLASDQGYVETLDGRRL-----YLPEIN 831

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           +R         +A       G A    KR  + +         L    P  R
Sbjct: 832 ARNGMRRKAAERAAINAPMQGTAADIIKRAMIAV------DGWLQEAQPEVR 877


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/596 (17%), Positives = 184/596 (30%), Gaps = 96/596 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQVL 57
           L +D ET S   +        AE     L    F   P + +      D      M  + 
Sbjct: 375 LSLDTETTSTNTMQ-------AE-----LVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIF 422

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL 116
           K   E   +  +  N  ++  VL       I I   +   ++A     P         A 
Sbjct: 423 KPLYEEDKILKIGQNIKYDYEVLAQY---GINIKGKMFDTMIAHYLIQPELHHNMDYMAE 479

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRL 175
            L + K     ELI    K + +     RN  P          EY   D  +T +++  L
Sbjct: 480 TLLNYKTIHIDELIGAKGKEQKN----MRNLSPT------SIYEYACEDADITLQLYNVL 529

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P              E  L  +   +   G C+D       + I        + ++   
Sbjct: 530 LPKLKDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQIYEQ 589

Query: 226 TYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
             G   +    +++   LF +   +     T+     T + VL S +  +P         
Sbjct: 590 A-GEKFNISSPKQVGDILFGKMQIMEKPKKTKKGQYVTNEEVLQSLEASSPIV------- 641

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   R  L + G  +         P     R  R H   +
Sbjct: 642 ------------------------RNILNYRGIKKLLGTYVDALPKLINKRTGRIHTSFN 677

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +SDP+   I         +R C I         AD + IE R++A ++ +
Sbjct: 678 QALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPECVFFSADYSQIELRIMAHLSKD 737

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF +G D++  T A+ +++    VT  QR   K     + Y         +A   
Sbjct: 738 ENMIEAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANFGIIYGITTY---GLAQRM 794

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+  N    L+      E++ +         E+  E A +  +  T   R ++     +S
Sbjct: 795 GIPNNEAKKLI------EDYFNTFPKVHDFMESAKELARKKGYAETIFGR-RRYLNDINS 847

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570
           + S +     +        G      K   + +     ++     ++L     L +
Sbjct: 848 KNSTVRGFAERNAINAPIQGTEADIIKVAMIRIYERFCRENIRSKMILQVHDELNF 903


>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
          Length = 959

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 108/642 (16%), Positives = 191/642 (29%), Gaps = 162/642 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+     V  +  ++  V     N  I +      T++ +              A ++ 
Sbjct: 433 LEDASRKKVGQHLKYDAHV---FANHGIALRGIAHDTMLQSYVLASHRNHGMDALAERVL 489

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
             K    +E+    C     +  +D              EY   D  +T  + + + P  
Sbjct: 490 HLKTITYEEV----CGKGASQIGFD------EVPLDRATEYAAEDADITLRLHRAMYPKV 539

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     + Q +   G  +D       +  +     +L+Q+  +L  G
Sbjct: 540 AEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLELEQQAYALA-G 598

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F +  L +   T     +T + VL    +  P    +        
Sbjct: 599 QPFNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 651

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    F G ++         P    P+  R H    Q   
Sbjct: 652 ------------------------DFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 687

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   +A  G  +V AD + IE R++A ++ ++  L
Sbjct: 688 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLL 747

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A     +AS  G+  
Sbjct: 748 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 804

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       +  K    +  +R   
Sbjct: 805 --------------------------------------------DAAKLYIDRYFARYPG 820

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +   + +           ++A +R  V  V+              GR L   D+      
Sbjct: 821 VARYMDE---------TRLVAHERGYVETVF--------------GRRLWLPDIN----G 853

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----------KAGYDI----V 625
            N   RQ               +Q  + D++   M+             K G  +    V
Sbjct: 854 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLDGSPSTGKPGAPMRTRQV 908

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P  +       L  LM      A  +PL AE
Sbjct: 909 MQVHDELVLEVPQEELSLVRERLPELMCGVA--ALRVPLVAE 948


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/656 (17%), Positives = 200/656 (30%), Gaps = 171/656 (26%)

Query: 51   PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------ 104
              +P+ LK  LE+  V  VA N  ++  +LK      I    +  T++++          
Sbjct: 483  DALPR-LKALLEDEAVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAH 538

Query: 105  --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
               P + K +G            GK                  N             Y  
Sbjct: 539  GMDPLSEKFLGHTPIPYKDVAGSGKA-----------------NVTFDLVDIDRATHYAA 581

Query: 163  GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             D  VT  ++  L+P  +           E+ L  +   +  RG  VD  +   L+  + 
Sbjct: 582  EDAEVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 641

Query: 213  VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
                +L+ E+  L  G   +    ++L   LF + GL     T+T    T  +VL     
Sbjct: 642  QSAARLEDEIYVLA-GERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTSAQVLEDLAA 700

Query: 269  L-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   ++ + R                                 ++         P  
Sbjct: 701  AGFELPRKIVDWRQ-------------------------------VTKLKSTYTDALPGY 729

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
              P   R H       T      +S+P+   I         +R+  I++   KL+ AD +
Sbjct: 730  VHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPRHKLISADYS 789

Query: 383  GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
             IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   + Y 
Sbjct: 790  QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG 849

Query: 443  GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
              A     +A+   +  +     +K      ++ +     R   E+    A +  ++ T 
Sbjct: 850  ISAF---GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETI 900

Query: 503  CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                                   +R + P +             
Sbjct: 901  FG-------------------------------------RRINYPEIRSSN--------- 914

Query: 563  PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
            PS R+       N R+ +N                    +Q  + D++   M+    A  
Sbjct: 915  PSVRAF------NERAAINAP------------------IQGSAADVIRRAMIKIEPALV 950

Query: 623  --------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
                     ++L VHDE++ E  D D E    ++  +M +    A  +  PL+ + 
Sbjct: 951  EVGLADRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVDA 1006


>gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106]
 gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106]
          Length = 927

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/646 (17%), Positives = 201/646 (31%), Gaps = 139/646 (21%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107
             + + L+  LE+        N+ F+R + K      I +   +   +LA     P    
Sbjct: 380 ETVLEALRPILESNKYPKALQNAKFDRLIFKVQ---GINLAGVVFDTMLASYVLNPDDSH 436

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  +      S    +  K+L          + + D + P   E       YC  DV  
Sbjct: 437 NLTELSRKYLDSGILAKSYKQLSL-----SKKQTIADLDIPTAAE-------YCGLDVYA 484

Query: 168 TREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T  I  +L             L   EQ L  +   +  +G  ++V     L+  ++ +  
Sbjct: 485 TYLIVPKLRKELQDFPELHKLLLDIEQPLEPVLAEMEYQGIRINVDYLKQLSSQLEKKLE 544

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
           +++++      G   +    ++L   LF    L  +   +T     T  +VL   K   P
Sbjct: 545 EIEKQAYQEA-GTEFNLGSPKQLSKLLFETLELSTKKSRKTKTGYSTDAKVLEKLKGDHP 603

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +  +R  A                               +         P    P+
Sbjct: 604 IIDSILEHRTLA-------------------------------KLKSTYVDALPELVHPQ 632

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H + +Q IT      +S+P+   I      S  +R   +   G  LV AD + IE 
Sbjct: 633 TQRIHTDFNQAITTTGRLSSSNPNLQNIPIRTEFSRQIRQAFLPEPGWLLVSADYSQIEL 692

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGA 445
           R+LA ++ E   ++A++T  D++  T    F       VT ++R  GK +   + Y  GA
Sbjct: 693 RILAHLSDEPILVEAYKTNRDIHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGMGA 752

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + +    +N N     +      E +           E   + AI   ++ T   R
Sbjct: 753 ---LRFSREMKVNTNKAKEFI------ERFNQQYEKLFEYLEEQKKQAISQGYVTTLLGR 803

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
            +                                          Y   +  +L  +  S 
Sbjct: 804 RR------------------------------------------YFHFESPSLKALKESP 821

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG---- 621
              +  D       +     Q  R            +Q  S DI+   M+          
Sbjct: 822 LEDIPLD---ELKKIGQNDAQFLRAAANAP------IQGSSADIIKIAMVKLRDVLQNYR 872

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             ++L VHDE+V E P  + E     +   M    +++  +PL  +
Sbjct: 873 AKLLLQVHDELVFEVPPEEWEELQPQIKQTMED--AYSLKVPLLVD 916


>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
          Length = 932

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/531 (16%), Positives = 166/531 (31%), Gaps = 68/531 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEA 115
           LK  LEN  +  V  N  ++ T+        I +       +L +              A
Sbjct: 411 LKPVLENPAIQKVGQNFKYDLTIFAR---NGIDVQGVAFDTMLESYVLNSTGRHNMDDLA 467

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +    +E+  +     T   +       +           +        ++++L
Sbjct: 468 KRYLGHQTITFEEIAGKGKNQLTFNQIPLEKAAEYAAEDADVTMKLQQ------VLWEKL 521

Query: 176 EPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L  +   +  RG  +D       +  +    ++L+++   L  G
Sbjct: 522 SKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSELEEQAYVLA-G 580

Query: 229 LVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    ++L+  LF + GL +         +T + VL            +  +R    
Sbjct: 581 QPFNLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHELPKVLVEHR---- 636

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                      G S+         P    P+  R H    Q +T
Sbjct: 637 ---------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVT 669

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R   IA EG  +V AD + IE R++A ++ +Q  +
Sbjct: 670 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLI 729

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++ +T A  F VA  +VT +QR   K +   L Y   A     ++   G+  
Sbjct: 730 NAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLGIGR 786

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 +                +    +  E A    ++ T   R +      +S    
Sbjct: 787 ADAQSYMDLYFKRYP------GVQTFMHDIREKAKAQGYVETLFGR-RLYLPDINSSNGM 839

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                 +        G A    KR  + L    ++  ++ +++     LV+
Sbjct: 840 RRKAAERVAINAPMQGTAADIIKRAMIQLDQKLQNDPDIAMIMQVHDELVF 890


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/600 (17%), Positives = 192/600 (32%), Gaps = 90/600 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60
            ID ET +  D         A    ++  +F  ++          +      + Q+ K  
Sbjct: 351 SIDTET-TSTD---------AISAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPL 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
            E+  +  +  N  ++  VL       + +   +   ++A     P         A  L 
Sbjct: 401 YESDKIMKIGQNIKYDYEVLTRY---GVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLL 457

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           S +    +EL+    KG+  + + D +  +         EY   D  +T  +   LEP  
Sbjct: 458 SYQTIHIEELLGP--KGKKQKNMRDLSPTD-------IYEYAAEDADITLRLKNVLEPRL 508

Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +          E  L  +   +   G C+D       ++I      + +QE+     G 
Sbjct: 509 KELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEA-GE 567

Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             +    +++   LF +   +     T+T    T + VL S +  +P             
Sbjct: 568 EFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIV----------- 616

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                               R  L + G  +         P    PR    H   +Q +T
Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALT 656

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R C I  EG     AD + IE R++A ++ ++  +
Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMM 716

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A+ ++V   +VT  QR   K     + Y         +A    +  
Sbjct: 717 EAFREGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTY---GLAQRMDIPN 773

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                L+      E +       +   E+  E A    +  T   R ++     +SR + 
Sbjct: 774 GEAKELI------EGYFRTFPKVQAYMEHAKEVARAKGYAETLFHR-RRYLADINSRNAT 826

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +     +        G      K   V +    KK+     ++L     L +      R 
Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEERE 886


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 112/651 (17%), Positives = 194/651 (29%), Gaps = 155/651 (23%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--N 103
           D +    +   LK  LEN D+  +  N  ++  +L    N  I +       +L     +
Sbjct: 377 DQLDFEQVLAKLKPILENADILKLGQNLKYDSNIL---CNHGITLRGITEDTMLESYVLD 433

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            + +       ALK   +   + +++  +  K  T   +          A      Y   
Sbjct: 434 SVGTRHDMDSLALKYLGRGTTKFQDIAGKGAKQLTFNQI----------ALEQAAPYAAE 483

Query: 164 DVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           D  VT  + + L P            +  E  L  +   I   G  +        +  + 
Sbjct: 484 DADVTLRLHEVLSPKLKAVPRLHQLYAELEVPLVAVLSRIERNGAYISRQSLADHSHELA 543

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
                L+   + L  G   +    ++L   LF + GL +   T      T + VL    +
Sbjct: 544 GRLESLEARAQELA-GQAFNLGSPKQLGEILFDKLGLPVIKKTPKGAPSTAEEVLLELAE 602

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    +   R                                 S+         P   
Sbjct: 603 DYPLPSVLMEYRSL-------------------------------SKLKSTYTDRLPEVI 631

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383
            P   R H    Q +T      +SDP+   I         +R   +A EG++++ AD + 
Sbjct: 632 DPDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGRRILAADYSQ 691

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ +   L+AF  G D++  T A  F V    VT DQR   K +   L Y  
Sbjct: 692 IELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELNDVTVDQRRKAKAINFGLIYGM 751

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A     +A    +                       +       +P   + D    T  
Sbjct: 752 SAF---GLARQLHIGRGEAQE----------------YIERYFSRYP--GVADYMARTRA 790

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           E  ++ + + H                           +R  +P +  K  +        
Sbjct: 791 EAHERGYVETH-------------------------FGRRLQLPEINAKNKQ-------- 817

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619
                  R +   R+ +N                     Q  + DI+ + M+        
Sbjct: 818 -------RQLAAERTAINAPM------------------QGTAADIIKKAMIAVDAWLQD 852

Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEG 667
                 +++ VHDE+V E  +T     S  L  LM      A  +PL  E 
Sbjct: 853 SSLDALLIMQVHDELVFEVAETAVAQLSEALPSLMADVA--ALEVPLLVEA 901


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/677 (16%), Positives = 193/677 (28%), Gaps = 166/677 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D    G+     D  ++  +F    H        H  P +P  L         +  LE+ 
Sbjct: 335 DTETTGLD--VMDARLVGMSFAITPHEAAYLPLAHRYPGVPDQLDLDATLARLRPWLESE 392

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
               +  N  +++ +     N  I +       +L         +      AL+    K 
Sbjct: 393 QHKKLGQNLKYDKHI---FANHGIALRGISDDTLLESYVLESHKSHDMDSLALRHLGVKT 449

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------ 177
              +E+  R  K    + +             +   Y   D  +T ++ + L P      
Sbjct: 450 ISYEEVAGRGAKQICFDQV----------DLDIATRYAAEDADITLQLHQSLAPEITGKT 499

Query: 178 -----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E     +   +   G  +D  L H  +  + V+   L+            +
Sbjct: 500 GLQHVYRDIELPAMQVLFVMERNGVLLDANLLHVQSHELGVKLIALEARAHE-AAEQPFN 558

Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               ++++  LF +  L ++  T +    T + VL       P    +            
Sbjct: 559 LNSPKQIQEILFDKLKLPVKKKTPSGAPSTDEEVLQELALDYPLPKILLE---------- 608

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                + G ++         P        R H    Q +     
Sbjct: 609 ---------------------YRGMAKLKSTYTDKLPKMVNRATGRVHTSYSQAVAVTGR 647

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +SDP+   I         +R   IA  G  +V AD + IE R++A ++G+   L+AF 
Sbjct: 648 LASSDPNLQNIPIRSAEGRRIREAFIAPSGSCIVAADYSQIELRIMAHLSGDAGLLQAFA 707

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             ED++  T A  F   P  VT +QR   KV+   L Y   A     +A   G+      
Sbjct: 708 KNEDVHRATAAEIFMTTPVDVTTEQRRYAKVINFGLIYGMSAF---GLAKQLGIERGAAQ 764

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +                                             +  +R   + + 
Sbjct: 765 AYIA--------------------------------------------RYFARYPGVRDY 780

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-GNNRSYLNT 582
           +    EQ  + G       RR               L LP   S       G  R+ +N 
Sbjct: 781 MDSTREQAKQQGYVETVFGRR---------------LWLPEINSSNAMKRQGAERAAINA 825

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
                               Q  + D++   M+         K    +++ VHDE+V E 
Sbjct: 826 PM------------------QGTAADLIKLAMIQVQGWLETEKLKTRLIMQVHDELVLEV 867

Query: 637 PDTD-EFNASMLYHLMT 652
           PD +     + L  LM 
Sbjct: 868 PDDELSLIKASLPGLMC 884


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 109/630 (17%), Positives = 212/630 (33%), Gaps = 136/630 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  +  N  ++  V+K      I I  +  T++L+ +            AL
Sbjct: 442 LKPILEDQAVLKIGQNIKYDWLVMKQY---GIVIRCFDDTMLLSYALD--------AGAL 490

Query: 117 KLSSQKMEE---GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             +   + E   G + IA   K  TH     +     +   +    Y   D  +T  +++
Sbjct: 491 THNMDALSERWLGHKPIAY--KDLTHNGK--KITSFAQVDLKQATLYAAEDADITLRLWQ 546

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P              ++ L  +   + +RG  VD  +   L+  +      L++E+ 
Sbjct: 547 VLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQILLRLSGELAQAAFILEEEIY 606

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            L  G   +    ++L   LF +  L     T++      +   +       +       
Sbjct: 607 QLA-GEKFNLASPKQLGGILFGKMSLPGGTRTKSGQWSTSAQTLEELAAEGHILP----- 660

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                R  + +   ++         P   L +  R H      I
Sbjct: 661 ---------------------RKIIDWRQLAKLKSTYADALPSYILSKTGRIHTNYSLAI 699

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +S+P+   I         +R+  IA +G  L+ AD + IE R+LA +A     
Sbjct: 700 TSTGRLSSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSADYSQIELRILAHIADIIAL 759

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF  G+D++  T ++ F VA   +  D R   K +   + Y   A     +A+  GL+
Sbjct: 760 KEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAINFGIIYGISAF---GLANQLGLS 816

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                            ++A ++ +   E  P   I+D    T      K +  ++  V 
Sbjct: 817 R----------------QEASHYIQLYFERFP--GIKDYMEMT------KNFACRNGYVE 852

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            ++                                           GR + Y ++     
Sbjct: 853 TIF-------------------------------------------GRRIHYPEIKAANL 869

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
            + +   +        G   + I +A+   I  E  +   K    ++L VHDE++ E P+
Sbjct: 870 QVRSFNERAAINAPIQGSAADIIRRAM---IQMENALEKEKLSAKMLLQVHDELIFEVPE 926

Query: 639 TD-EFNASMLYHLM--TSNPSWAKGLPLKA 665
            + E   +++  +M   + P  +  +PL+ 
Sbjct: 927 DESERTMALVKKVMENATMPVLSLSVPLEV 956


>gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
 gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
          Length = 932

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 126/699 (18%), Positives = 217/699 (31%), Gaps = 172/699 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------VHDPVMPQ 55
           ++ID ET S            A +  ++ +A                     + +  +  
Sbjct: 359 IYIDLETTSVT----------AMEADIVGWAVAAKPGEAFYIPVRGPAGQQTMDNQEVLD 408

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           + +  LEN  + I   N  ++  V K      I + +     ++         L A   +
Sbjct: 409 IFRPLLENPRIAISNQNIKYDLLVWKRH---GIELQKIGMDPMVGHYL-----LDAGARS 460

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
             LSS   E  K  +       +      +N+    E       EY   D     +I   
Sbjct: 461 HGLSSLADEFLKHRMI----PISELIGTGKNQKRMDEIDIDQVAEYASEDADAALQIADI 516

Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +      EQELW L Q            +   G  VD       +++V     +L +ELE
Sbjct: 517 IRDKL-HEQELWNLYQDVERPLIGVLAEMEFAGIRVDDEELFRQSELVGRRVEELLEELE 575

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280
            +      +    ++L+  LF E GL ++  T+T   T Q VL     L P   ++   R
Sbjct: 576 GMAD-RPFNPDSPKQLREVLFDEIGLPVQKRTKTGPSTDQSVLEKLAPLHPLPAKIIEYR 634

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A                               +         P     +  R H   +
Sbjct: 635 QLA-------------------------------KLKGTYLDSLPKLINQQTGRIHASFN 663

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q++       +SDP+   I         VR   I  E G +L+  D + IE RVLA  +G
Sbjct: 664 QVVAATGRLSSSDPNLQNIPIRTPEGRQVRKAFIPGEPGWELLCCDYSQIELRVLAHFSG 723

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +    +AF++G+D++    A  F V  A V  D R + K +   + Y         +A+ 
Sbjct: 724 DAALQEAFQSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVNFGVIYGQSPY---GLAAA 780

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +     A  +                                               +
Sbjct: 781 LNIPQEQAAEFIDDYFMR-----------------------------------------Y 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             VS+    + +  EQ   +G A     RR    +   K+       +P           
Sbjct: 800 PGVSQF---IEETLEQCARSGYAYTMLGRR--RPITGIKNTGGRNRNMP----------- 843

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
             R+ +NT                  ++Q  + D++   M+N  +          ++L +
Sbjct: 844 -ERTAINT------------------VIQGSAADLIKLAMLNVHRELATSGLSARMLLQI 884

Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           HDE+V ETP  +      L H  M +       +PL  +
Sbjct: 885 HDELVFETPVEELEPLRELVHREMVNAHP--LSVPLVVD 921


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 112/656 (17%), Positives = 201/656 (30%), Gaps = 171/656 (26%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------ 104
             +P+ LK  LE+  V  VA N  ++  ++K      +    +  T++++          
Sbjct: 466 DALPR-LKALLEDESVLKVAQNLKYDYLLMKRY---GVETKSFDDTMLISYVLDAGTGAH 521

Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
              P + K +G            GK                  N             Y  
Sbjct: 522 GMDPLSEKFLGHTPIPYKDVAGSGKA-----------------NITFDLVDIDRATHYAA 564

Query: 163 GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  ++  L+P  +           E+ L  +   +  RG  VD  +   L+  + 
Sbjct: 565 EDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 624

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
               +L+ E+ +L  G   +    ++L   LF + GL     T+T    T   VL     
Sbjct: 625 QGAARLEDEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAA 683

Query: 269 L-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  ++ + R                                 ++         P  
Sbjct: 684 AGFELPRKIVDWRQL-------------------------------TKLKSTYTDALPGY 712

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
             P   R H       T      +S+P+   I         +R+  I++ G KL+ AD +
Sbjct: 713 VHPETRRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   + Y 
Sbjct: 773 QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG 832

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             A     +A+   +  +     +K      ++ +     R   E+    A +  ++ T 
Sbjct: 833 ISAF---GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETI 883

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                                  +R + P +             
Sbjct: 884 FG-------------------------------------RRINYPEIRSSN--------- 897

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
           PS R+       N R+ +N                    +Q  + D++   M+    A  
Sbjct: 898 PSVRAF------NERAAINAP------------------IQGSAADVIRRAMIKMEPALA 933

Query: 623 --------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
                    ++L VHDE++ E  D D E    ++  +M +    A  +  PLK + 
Sbjct: 934 EAGLAERVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLKVDA 989


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 125/637 (19%), Positives = 192/637 (30%), Gaps = 154/637 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+     + H++ ++  V     N  I +       +L        + + VG   
Sbjct: 385 LKPWLEDASRAKLLHHAKYDAHV---FANEGIALAGITDDTMLQAYVL--ESHRGVGLN- 438

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L+ + +          C     +  +D        A    G Y   D   T ++   L 
Sbjct: 439 DLAQRYLGRSGISYEDLCGKGAKQIGFD------EVAVDKAGHYAAEDADFTLQLHHVLR 492

Query: 177 PLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P+ +  + L  + Q          TI   G  VD       +  +  E  +L+Q+   L 
Sbjct: 493 PMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEELGRQSHKLGQEMLRLEQKAYELA 552

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   LF    L +   T     +T + VL+      P    +   R  
Sbjct: 553 -GQPFNLNSPKQLGEILFDRMQLPVVRKTASGAPSTDEDVLTKLALDYPLPQVLLEYR-- 609

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                        G S+         P    P   R H    Q 
Sbjct: 610 -----------------------------GLSKLKSTYTDKLPRMINPATGRVHTRYSQA 640

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                   +SDP+   I         VR   IA +G  L+ AD + IE R++A ++ +  
Sbjct: 641 AVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-MLLSADYSQIELRIMAHVSDDAN 699

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              AF  GED++  T A  F VA A V+ DQR   K +   L Y  G      +AS  G+
Sbjct: 700 LQSAFAAGEDIHRATAAEVFGVALADVSTDQRRAAKAINFGLIYGMGVF---GLASNLGI 756

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             +     +    A               EN    A E  ++ T   R            
Sbjct: 757 TRDAAQAYIDRYFARYP------GVAMYMENTRRLAREQGYVETVFGR------------ 798

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNN 576
                                                     L LP  R     R  G  
Sbjct: 799 -----------------------------------------RLQLPEIRGASGPRRQGAE 817

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHD 630
           R+ +N                     Q  + D++   M      + A K    +++ VHD
Sbjct: 818 RAAINAPM------------------QGTAADLIKLAMVAVQDWLEAEKLQTRMIMQVHD 859

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E PD + E     L  LM S       +PL AE
Sbjct: 860 ELVLEAPDNEIEVVKEALPRLMCSVAE--LRVPLVAE 894


>gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 933

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/568 (17%), Positives = 170/568 (29%), Gaps = 85/568 (14%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   PV+L D  H       L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTHALA---QLAPLLT 415

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V  +  ++  V++      + +  +    +L        +          +   
Sbjct: 416 DPAVRKVGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 462

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           M+   +    +   K E       +  P  + +      Y   D  +T  +   L P  +
Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLA 522

Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E             L  +   I   G CVD A     +  +        Q+   L  G 
Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 582 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 629

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L++ G ++         P    P+  R H    Q    
Sbjct: 630 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 730

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 731 AFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL 548
                +A       G A    KR  V +
Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVKV 868


>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
 gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
          Length = 946

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 113/642 (17%), Positives = 191/642 (29%), Gaps = 162/642 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+     V  +  ++  V     N  I +      T++ +              A ++ 
Sbjct: 420 LEDETRGKVGQHLKYDAHV---FANHGIALRGITHDTMLQSYVLASHRNHGMDALAERVL 476

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
             K    +E+    C     +  +D        A     EY   D  +T  + + L P  
Sbjct: 477 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 526

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     + Q +   G  VD       +  +      L+QE  +L  G
Sbjct: 527 AEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLALEQEAYALA-G 585

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F +  L +   T     +T + VL    +  P    +        
Sbjct: 586 QPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 638

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    + G ++         P    P+  R H    Q   
Sbjct: 639 ------------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 674

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   +A  G  +V AD + IE R++A ++G+   +
Sbjct: 675 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLM 734

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A     +AS  G+  
Sbjct: 735 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 791

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       +  K    +  +R   
Sbjct: 792 --------------------------------------------DAAKLYIDRYFARYPG 807

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +   + +            IA +R  V  V+              GR L   D+      
Sbjct: 808 VARYMDE---------TRQIAHERGYVETVF--------------GRRLWLPDIN----G 840

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDI----V 625
            N   RQ               +Q  + D++   M+          NA K G  +    V
Sbjct: 841 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLV 895

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P  +       L  LM         +PL AE
Sbjct: 896 MQVHDELVLEVPQDELARVRERLPELMCGVAL--LSVPLVAE 935


>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
 gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
          Length = 928

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/511 (18%), Positives = 160/511 (31%), Gaps = 74/511 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEA 115
           LK  L +  V  V HN  ++  V+       + +  +  T++L+ +  G           
Sbjct: 406 LKPLLADPSVLKVGHNIKYDMQVMAMQ---GLAVEPFDDTMLLSYALDGASHGHGLDELC 462

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L           E+    C    ++  +DR             +Y   D  +T  +   L
Sbjct: 463 LLHLGHANIPFSEV----CGSGRNQVTFDR------VPLDKARDYAAEDADMTLRLHALL 512

Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P            + E+ L  +   +   G  VD A    L++      T+L+ E+ +L
Sbjct: 513 KPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLMALSEDFGRRLTELETEVIAL 572

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L   LF    L     T+T    T   VL     L     ++ + R 
Sbjct: 573 NNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVLEELAPLHALPARLLDWRQ 632

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                           S+           Q  P   R H     
Sbjct: 633 L-------------------------------SKLKGTYTDALVAQINPATGRVHTSYSL 661

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      +SDP+   I         +R   +A  GKKLV AD + IE R++A +A   
Sbjct: 662 AATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKKLVSADYSQIELRLVAHVAEIA 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               AF  G D++  T ++ F V    +    R   K +   + Y   A     +A+  G
Sbjct: 722 GLRDAFAHGADIHAITASQVFGVPLDGIDPALRRRAKAINFGIIYGISAF---GLAAQLG 778

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +        ++   A   + +     R   E   E A +  F+ T   R K        +
Sbjct: 779 IPQGEAKAYIEAYFAR--YPE----IRAYMERTKEEARDQGFVTTLFGR-KVFTPGIKDK 831

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              +     +A       G A    KR  + 
Sbjct: 832 NGAMRAFAERAAINGPIQGGAADIIKRAMIR 862


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 399

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+     E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +  G   +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    E+++N+ +   + +P                     +  
Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT--DEFNASMLYHLM 651
           E+V E      DE +   +  +M
Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899


>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
 gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
          Length = 960

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/642 (17%), Positives = 193/642 (30%), Gaps = 162/642 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+   + V  +  ++  V     N  I +      T++ +              A ++ 
Sbjct: 434 LEDEIRSKVGQHLKYDAHV---FANHGIALRGIAHDTMLQSYVLASHRNHGMDALAERVL 490

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
             K    +E+    C     +  +D        A     EY   D  +T  + + L P  
Sbjct: 491 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 540

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     + Q +   G  VD       +  +      L+QE  +L  G
Sbjct: 541 AEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGHRLLALEQEAYALA-G 599

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F +  L +   T     +T + VL    +  P    +        
Sbjct: 600 QPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 652

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    + G ++         P    P+  R H    Q   
Sbjct: 653 ------------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 688

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   +A  G  +V AD + IE R++A ++G+   +
Sbjct: 689 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLM 748

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A     +AS  G+  
Sbjct: 749 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 805

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       +  K    +  +R   
Sbjct: 806 --------------------------------------------DAAKLYIDRYFARYPG 821

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +   + +            IA +R  V  V+              GR L   D+      
Sbjct: 822 VARYMDE---------TRQIAHERGYVETVF--------------GRRLWLPDIN----G 854

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDI----V 625
            N   RQ               +Q  + D++   M+          NA K G  +    V
Sbjct: 855 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLV 909

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P  +       L  LM    S    +PL AE
Sbjct: 910 MQVHDELVLEVPQDELARVRERLPELMCGVAS--LSVPLVAE 949


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+     E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +  G   +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    E+++N+ +   + +P                     +  
Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT--DEFNASMLYHLM 651
           E+V E      DE +   +  +M
Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899


>gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
 gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
          Length = 946

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/610 (17%), Positives = 193/610 (31%), Gaps = 92/610 (15%)

Query: 7   DFETRSPIDLTK---CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQV 56
           D ET + ID+ K    G            F+  +          V           M  V
Sbjct: 381 DVET-TDIDVMKAVPVG------------FSLSWKAGEAWYVPLVAGGKTVSNEKAMKAV 427

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K+ LEN  + ++  N  ++  V+               T+V A        L +     
Sbjct: 428 VKKHLENPALGVIGQNLKYDYKVMARWGVRIANP--VFDTMVAAWL------LDSASGIY 479

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +     +    +        T++ +  +             +Y   D  VT  +++   
Sbjct: 480 NMDKLADKYLGYVT------ITYDQVVPKGALFSDVPLDKAVQYAAEDADVTWRLYETFA 533

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P+ ++          E  L  +   +   G  +DV       + +D    K+ +E+  L 
Sbjct: 534 PMLAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKITREIYELC 593

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G   +    ++L+T LF E GL +   T +     + + +KL                 
Sbjct: 594 -GHEFNINSPKQLQTVLFGERGLPVGRKTASGPSTAVETLEKLVGLDPVPAL-------- 644

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                L + G  +         P Q      R H    Q  T  
Sbjct: 645 --------------------ILDYRGLVKLKNTYIDALPEQVDVNTGRVHTTFIQTGTAT 684

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +RS  +   G   + AD A IE  VLA + G++   +A
Sbjct: 685 GRLASRNPNLQNIPIRNDDGRRIRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREA 744

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T +  FNV P  VT DQR I K +   + Y        ++++   ++ + 
Sbjct: 745 FLAGQDVHRHTASLIFNVKPEDVTPDQRRIAKTINFGVMYGMSTF---RLSNELAISHSQ 801

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  + +    + +   + F    ++   E        G   ER     R  +       
Sbjct: 802 AAEFIDS--YFKRYHGVKTFVDETRKKAEETGFVSTMFGH--ERHVPEIRSSNRMEK--- 854

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYL 580
           +   +    TI  G A    K   + +    KD   N  L+L     L++         L
Sbjct: 855 SGAERVVVNTIIQGTAADIMKLAMLRISRSLKDSGINARLLLQVHDELIFEVASGQEEKL 914

Query: 581 NTTTRQLTRE 590
           +   +    +
Sbjct: 915 SVLVKDAMEK 924


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/687 (15%), Positives = 218/687 (31%), Gaps = 156/687 (22%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68
            ID    G      D  ++  +F   ++         +      +    +   EN     
Sbjct: 382 SIDTETTGTEP--MDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKSMK 439

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           V  N  ++  +L+   N  + +   +   +LA     P                M+   E
Sbjct: 440 VGQNIKYDMIILQ---NYGVQVKGKLFDTMLAHYVLQPE-----------LRHNMDYLAE 485

Query: 129 LIARFCKGETHE--CLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS------ 179
           +   +      +      +N+ N R+        Y   D  VT ++   LE         
Sbjct: 486 IYLHYQTIHIDKLIGARGKNQKNMRDLSPEDVYRYACEDADVTLKLKNVLEKELKEQGAE 545

Query: 180 ----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
                 E  L  +   I   G  +D       +Q   V   ++++E+  +  G   +   
Sbjct: 546 HLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNISS 604

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            +++   LF +  + +E   +T   + +                      ++   L +  
Sbjct: 605 AKQVGEVLFDKLKI-VEKAKKTKTGQYV----------------------TSEEVLQSYR 641

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
              +  G++   L++ G  +         P    PR  R H   +Q +T      +S+P+
Sbjct: 642 SKHDIIGKI---LEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAVTATGRLSSSNPN 698

Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I         +R   I   G +   AD + IE R++A ++ ++  ++AF +G D++ 
Sbjct: 699 LQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGHDIHA 758

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T A+ + +    VT D R   K     + Y         +A   G++            
Sbjct: 759 ATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVF---GLAERMGVSR----------- 804

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                ++A+       E +P                            ++   + ++ + 
Sbjct: 805 -----QEAKELIDGYFETYP----------------------------QVKEYMDKSIQV 831

Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
             E G    I  ++R +P +              + R+ V R     R+ +N        
Sbjct: 832 AREQGYVETIFHRKRFLPDI--------------NSRNGVVRGY-AERNAINAP------ 870

Query: 590 EYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M        A      ++L VHDE+    P+ + E 
Sbjct: 871 ------------IQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKEL 918

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE-GY 668
              ++   M    ++   +PLKA+ G+
Sbjct: 919 VQKIVIEEMEQ--AYRMQVPLKADCGW 943


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 399

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+     E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +  G   +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    E+++N+ +   + +P                     +  
Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT--DEFNASMLYHLM 651
           E+V E      DE +   +  +M
Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899


>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
 gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
          Length = 946

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/629 (16%), Positives = 184/629 (29%), Gaps = 136/629 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+     V  +  ++  V     N  I +      T++ +              A ++ 
Sbjct: 420 LEDAARKKVGQHLKYDAHV---FANHGIALRGIAHDTMLQSYVLASHRNHGMDALAERVL 476

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
             K    +E+    C     +  +D              EY   D  +T  + + L P  
Sbjct: 477 HLKTITYEEV----CGKGASQIGFD------EVPLDRATEYAAEDADITLRLHRALYPKV 526

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     + Q +   G  +D       +  +     +L+Q+  +L  G
Sbjct: 527 AEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLELEQQAYALA-G 585

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F +  L +   T     +T + VL    +  P    +        
Sbjct: 586 QPFNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 638

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    F G ++         P    P+  R H    Q   
Sbjct: 639 ------------------------DFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 674

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   +A  G  +V AD + IE R++A ++ ++  L
Sbjct: 675 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLL 734

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A     +AS  G+  
Sbjct: 735 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 791

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKHSRVS 518
           +     +        +       R+M E     A E  ++ T   R  + W    +    
Sbjct: 792 DAAKLYID-----RYFARYPGVARYMDETRL-VAHERGYVETVFGR--RLWLPDINGGNG 843

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +A       G A    K   +                                
Sbjct: 844 PRRQAAERAAINAPMQGTAADLIKLSML-------------------------------- 871

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                 +         GK    +    +R ++                 VHDE+V E P 
Sbjct: 872 ----AVQDWLDGSPSAGKPGAPMR---TRQVM----------------QVHDELVLEVPQ 908

Query: 639 TD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            +       L  LM    S    +PL AE
Sbjct: 909 EELSLVRERLPELMCGVAS--LRVPLVAE 935


>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
 gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
          Length = 944

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 113/642 (17%), Positives = 191/642 (29%), Gaps = 162/642 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+     V  +  ++  V     N  I +      T++ +              A ++ 
Sbjct: 418 LEDETRGKVGQHLKYDAHV---FANHGIALRGITHDTMLQSYVLASHRNHGMDALAERVL 474

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
             K    +E+    C     +  +D        A     EY   D  +T  + + L P  
Sbjct: 475 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 524

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     + Q +   G  VD       +  +      L+QE  +L  G
Sbjct: 525 AEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLALEQEAYALA-G 583

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F +  L +   T     +T + VL    +  P    +        
Sbjct: 584 QPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 636

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    + G ++         P    P+  R H    Q   
Sbjct: 637 ------------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 672

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   +A  G  +V AD + IE R++A ++G+   +
Sbjct: 673 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLM 732

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A     +AS  G+  
Sbjct: 733 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 789

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       +  K    +  +R   
Sbjct: 790 --------------------------------------------DAAKLYIDRYFARYPG 805

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +   + +            IA +R  V  V+              GR L   D+      
Sbjct: 806 VARYMDE---------TRQIAHERGYVETVF--------------GRRLWLPDIN----G 838

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDI----V 625
            N   RQ               +Q  + D++   M+          NA K G  +    V
Sbjct: 839 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLV 893

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E P  +       L  LM         +PL AE
Sbjct: 894 MQVHDELVLEVPQDELARVRERLPELMCGVAL--LSVPLVAE 933


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 201/583 (34%), Gaps = 83/583 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70
           D    G+   A +V ++  AF ++           D      + +  +   E+T +  V 
Sbjct: 375 DTETTGLK--ALEVELVGIAFSWEKGKGYYVAFPEDQSETTAILEEFRPFFESTTIEKVG 432

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VL    N D+P+   +   ++A     P         +    + +     EL
Sbjct: 433 QNLKYDIKVLS---NYDMPVKGQLFDTMIAHYLINPDMRHNMDVLSETYLNYQPVSIVEL 489

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----------EPLS 179
           I +  K      L  R  P          EY   D  +T ++ +            +  S
Sbjct: 490 IGKKGK----NQLSMRQVP-----LEQQTEYAVEDADITYQLKEHFIKELESGHLTKLFS 540

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +D      L++ + V+  +L++++     G   +    ++L
Sbjct: 541 DVEVPLVSVLSAMEIEGINLDPDFLGELSKALAVDIDRLEKDIYEQA-GEEFNIGSPKQL 599

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T+T    T + VLS   K       +   R              
Sbjct: 600 GPILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHQIVADILEWRQY------------ 647

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                               +         P +  P+ +R H    Q +       +++P
Sbjct: 648 -------------------RKLQSTYVDALPNEINPKTNRIHTVYAQAVAATGRLSSNNP 688

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   +   E   L+ AD + IE R++A ++ E   ++AF+ G D+
Sbjct: 689 NLQNIPIRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSKEDTMMQAFKDGADI 748

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T +R FNV   +VT++QR+  K +   + Y   A     +++ T L  +    L+ T
Sbjct: 749 HASTASRVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLTRSESKELIDT 805

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                   +     +    N    A E+ ++ T   R ++  +  +SR + +     +  
Sbjct: 806 YY------ETYPKLKAYMSNQVAFARENGYVETVLGR-RRYLKDINSRNAIVRGAAERNA 858

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
                 G A    K   + +    +++     ++L     LV+
Sbjct: 859 VNAPIQGSAADIIKLAMINIYNRFEEEGFKSKMLLQVHDELVF 901


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/701 (16%), Positives = 207/701 (29%), Gaps = 170/701 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET S   +          D  ++   F  ++H            +P   +EAL
Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYV------AIPNDREEAL 391

Query: 62  ----------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK 110
                     E+  +  +  N  ++  VLK   N  + +   +   +LA     P     
Sbjct: 392 QYVNIFKPVYEDPSILKIGQNLKYDYEVLK---NYGVTLGGKMFDTMLAHYVIQPELHHN 448

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169
               A  L   K     ELI              +++ + R+   +   EY   D  +T 
Sbjct: 449 MDYMAETLLHYKTIHIDELI----------GPRGKHQKSMRDLDPKDVYEYAAEDADITL 498

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           ++   LEP   +          E  L  +   +   G  +D    H  + I      +L+
Sbjct: 499 QLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLE 558

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAI 274
           Q++     G   +    +++   LF +   +     T+T    T + VL S +   P   
Sbjct: 559 QQIYEKA-GETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLRAKHPIVA 617

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +                                 + G  +         P     R   
Sbjct: 618 DIL-------------------------------DYRGLKKLLGTYVEALPKLINKRTGH 646

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H   +Q +T      +SDP+   I         +R C +  +      AD + IE R++
Sbjct: 647 IHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIM 706

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++G++  ++AF  G D++  T A+ ++   A VT ++R   K     + Y        
Sbjct: 707 AHLSGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTY--- 763

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A    ++      L+      E +       R   E   E A    +  T   R ++ 
Sbjct: 764 GLAQRMEIDNREARELI------EGYFATFPKVRAYMEQAKEEARRKGYAETLFGR-RRY 816

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                S+   +     +        G      K   +                       
Sbjct: 817 LPDITSKNGTVRGFAERNAINAPIQGSEADIIKIAMI----------------------- 853

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                          R   R         ENI                      ++L VH
Sbjct: 854 ---------------RIWQRFK------AENIR-------------------SKMILQVH 873

Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
           DE+     PD  E    ++   M    ++   +PL A+ G+
Sbjct: 874 DELNFSVYPDEKERVEKIVLEEMQG--AYQLQVPLIADAGW 912


>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
 gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
          Length = 932

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/677 (16%), Positives = 196/677 (28%), Gaps = 162/677 (23%)

Query: 27  DVCVILFAFGFDDHPVELWDCVH--DPVMPQ--------VLKEALENTDVTIVAHNSYFE 76
              ++  +F             H    V PQ         LK  LEN     V  N+ ++
Sbjct: 370 QARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLAQLKPWLENPAAAKVLQNANYD 429

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
           R VL    N  I +       +L         +  V  + +  +      +EL     K 
Sbjct: 430 RHVLA---NHGIRLAGVADDTML---------MDYVLASHERHNMDAMAERELGLATIKY 477

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE---------PLSSKEQELWY 187
           E       R              Y   D  VT  +   L            SS E     
Sbjct: 478 EDICGKGARQIGFAEVDLDTATRYAAEDADVTLRLRDVLAGKLDGARDTLYSSIELPTAA 537

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  +D A     +Q++  E   ++ E+  L  G   +    ++L   LF + 
Sbjct: 538 VLFAMERTGVLIDRAELARQSQVLGEEMLAIETEVYELA-GQPFNLNSPKQLSDILFNKL 596

Query: 248 GLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  + + +T      T + VL    +  P    +   R                     
Sbjct: 597 AIDTKGVKKTASGGYSTDESVLEKLAEDYPLPKALLRYR--------------------- 635

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360
                     G ++         P    P   R H    Q         +SDP+   I  
Sbjct: 636 ----------GLAKLKSTYTDKLPAMINPDTGRVHTHYSQASVVTGRLASSDPNLQNIPI 685

Query: 361 ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  VR   +A  G  +V AD + IE R++A ++G+   + AF  G D++  T +  
Sbjct: 686 RTDEGRRVREAFVAPAGSCIVSADYSQIELRIMAHLSGDAGLIAAFREGRDIHRATASEV 745

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V    V+ +QR   K +   L Y   A     +A +  ++                  
Sbjct: 746 FGVPLEAVSAEQRRYAKTINFGLIYGMSAF---GLAKSLEIDNKA--------------- 787

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            A+ F       +P   ++D    T     ++ W                         +
Sbjct: 788 -AQTFIERYFARYP--GVQDYMQRTREAAREQGW------------------------VE 820

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            +  R+                 L LP  RS                             
Sbjct: 821 TVFGRR-----------------LYLPEIRSSNAARRAGAERAA---------------- 847

Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYH 649
                +Q  + D++   M+         +    +++ VHDE+V E P+ +     + L  
Sbjct: 848 -INAPMQGTAADLIKLAMIRVADWLQREQLASRLIMQVHDELVLEVPEAERERVCAALPQ 906

Query: 650 LMTSNPSWAKGLPLKAE 666
            M +    A  +PL AE
Sbjct: 907 EMAAVAGLA--VPLVAE 921


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/637 (17%), Positives = 198/637 (31%), Gaps = 142/637 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            VL+  LE+  V  +A N  ++  V+     ++I  +    T++L+           + E
Sbjct: 466 DVLRPMLEDAGVLKIAQNLKYDWLVMARY-GVEIAPYD--DTMLLSYVLDAGKGGNGMDE 522

Query: 115 -ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A +         KE+        T + +                 Y   D  VT  +++
Sbjct: 523 LAERWLDHTPIPFKEVAGSGKAMVTFDKV----------PIDKATAYAAEDADVTLRLWR 572

Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P    E+           +  +   +  RG  VD  +   L+         L+ E+ 
Sbjct: 573 VLKPRLVAERMATVYETLERPMVPVLARMERRGISVDRQMLSRLSGDFAQGMAALEAEIH 632

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278
           +L  G   +    ++L   LF + GL     T+T    T   VL            ++  
Sbjct: 633 ALA-GESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSVSVLDDLAAEGHELPSKIVA 691

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P    P   R H  
Sbjct: 692 WRQL-------------------------------SKLKSTYSDALPSYIHPETKRVHTS 720

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                T      +S+P+   I         +R   +A +G+KL+ AD + IE RVLA MA
Sbjct: 721 YSLASTTTGRLSSSEPNLQNIPVRTEEGRKIRKAFVADKGRKLISADYSQIELRVLAHMA 780

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +AF  G D++  T +  F V    +    R   K +   + Y   A     +A+
Sbjct: 781 DIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAF---GLAA 837

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             GL+       +KT                                         + ++
Sbjct: 838 QLGLSRGEAGDYIKT-----------------------------------------YFER 856

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              + +    + +    T      +  RK     +              PS R+      
Sbjct: 857 FPGIRDYMEAIKKEV-HTKGYVTTVFGRKAHYPDVNTSN----------PSLRAFY---- 901

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
              R+ +N   +         G   + I +A+ R    +  + A K   +++L VHDE++
Sbjct: 902 --ERAAINAPIQ---------GSAADIIRRAMVR---MDAALAAAKLDAEMLLQVHDELI 947

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            E P+   E    ++  +M +    A  L  PL+ + 
Sbjct: 948 FEVPEDQVEATIPVVRRVMETATEPALTLSVPLQVDA 984


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/598 (15%), Positives = 177/598 (29%), Gaps = 86/598 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVA 70
           D    G      D  ++  +F   ++                + +  +   +N     V 
Sbjct: 397 DTETTGTDP--MDAELVGMSFSIAENQAFYIPVPAGREEATKIVREFESVFKNDKSLKVG 454

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127
            N  ++  VL+   N  I I   +   ++A     P     +  + E       +    +
Sbjct: 455 QNIKYDMLVLQ---NYGIEIRGRLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 509

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181
           ELI              +N  +          Y   D  VT ++   LE    K      
Sbjct: 510 ELIG-------PRGKGQKNMRDLSPKD--VYLYACEDADVTLKLKNILEQELKKNDAEKL 560

Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   I   G  +D       ++        +++E+ +L  G   +    +
Sbjct: 561 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLA-GEEFNIASPK 619

Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++   LF +   +     T+T    T + VL S +       ++   R            
Sbjct: 620 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYR------------ 667

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                              G  +         P    PR  R H   +Q +T      +S
Sbjct: 668 -------------------GLKKLLSTYIDALPQLINPRTGRIHTSFNQTVTATGRLSSS 708

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I         +R   I  +G     AD + IE R++A ++ ++  + AF +G D
Sbjct: 709 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSGYD 768

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A+ + V   +VT D R   K     + Y         +A    ++      L+ 
Sbjct: 769 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 825

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                E +   + +     +   EH   +          K+     +SR + +     + 
Sbjct: 826 --GYFETYPQVKAYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 878

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584
                  G A    K     +    K +     ++L     L +      +  +    
Sbjct: 879 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQVV 936


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+     E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +  G   +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    E+++N+ +   + +P                     +  
Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT--DEFNASMLYHLM 651
           E+V E      DE +   +  +M
Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/647 (15%), Positives = 183/647 (28%), Gaps = 158/647 (24%)

Query: 46  DCVHDP-----VMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D           MP     ++LK  LE+  +  +  N  ++  +L        PI   + 
Sbjct: 393 DLFGGEGLAEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILHRYGADVAPIDDTML 452

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            +  A   GL         + +    K    K L+       T + +   N         
Sbjct: 453 -MSYALHAGL-HGHGMDTLSERYLDHKPIPIKPLLGSGKSAITFDRVPIAN--------- 501

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205
               Y   D  +T  +++  +P   +EQ           L  +   +   G  VD  +  
Sbjct: 502 -AVPYAAEDADITLRLWQLFKPQLHQEQVTTVYETLERPLVPVLAQMERHGIKVDREVLS 560

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261
            ++     +   L+ E+  +  G   +    ++L   LF +  L      +T    T   
Sbjct: 561 RMSNAFAQKMAGLESEIHEMA-GADFNVGSPKQLGEILFDKLELPGGKKGKTGAYATGAD 619

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           +L            V + R                                 S+      
Sbjct: 620 ILEDLATEHALPGLVLDWRQL-------------------------------SKLKSTYT 648

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
                       R H    Q         ++DP+   I         +R   +A EG  L
Sbjct: 649 DALQDHINAETRRVHTSYAQTGASTGRMASTDPNLQNIPVRTEEGRRIREAFVAGEGNVL 708

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE R+LA MAG     +AF  G+D++  T +  F+V  A++T D R   K + 
Sbjct: 709 LSLDYSQIELRILAHMAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKAIN 768

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y         +A    +                   +A++F     +  P      
Sbjct: 769 FGVIYGISGF---GLARNLRIPRK----------------EAQDFIDRYFQRFP------ 803

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                         R+      E        F QT+   K   A      P     K   
Sbjct: 804 ------------GIRRYMDSTVEF--AKEHGFVQTLFGRKIHTAEINAKGPRAGFAK--- 846

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R+ +N                    +Q  + D++   M+ 
Sbjct: 847 --------------------RAAINAP------------------IQGTAADVIRRAMIR 868

Query: 617 ----ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658
                      ++L VHDE++ E P+   E   ++   +M    + A
Sbjct: 869 MPGAIAHLPARMLLQVHDELLFEVPEAAVEETIAVAKEVMEGAANPA 915


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
 gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
          Length = 923

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 VLAQIKPILENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+     E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +  G   +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    E+++N+ +   + +P                     +  
Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT--DEFNASMLYHLM 651
           E+V E      DE +   +  +M
Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 117/682 (17%), Positives = 207/682 (30%), Gaps = 167/682 (24%)

Query: 9   ETRSPIDLTKCGI-CKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVL 57
           ETR  ID     +  + AE   ++ F+  FD          HD            +   +
Sbjct: 344 ETRFAIDTETTSLDYRVAE---MVGFSVAFDAKDAYYVPLAHDYAGAPEQLNREQVLAQI 400

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEA 115
           K  LEN  V  + H+  ++  +     N  I +  W    +LA    N + +       A
Sbjct: 401 KPILENDQVEKIGHHLKYDAHI---FANHGIELKGWFFDTMLASYVLNSVATRHGMDDVA 457

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               S      +++  +  K ++   +             +   Y   D  VT  +++ L
Sbjct: 458 RLYLSHLTTTFEQVAGKGAKQKSFNQI----------ELEVASPYAAEDAHVTYRLYEVL 507

Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                        L + E  +  +   + + G  +D      L+        +L+Q+   
Sbjct: 508 AEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFLDQLSIEFAKTMQELEQQAME 567

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +  G   +    +++   LF + G+     T T    T + +L   +   P A  +  +R
Sbjct: 568 MA-GETFNIASPKQVGEVLFEKLGIKGGKKTTTGQFSTSESILEKIE--HPIAAVILEHR 624

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A                               +           Q+     R H    
Sbjct: 625 SLA-------------------------------KLKSTYTDALVKQSNNSTHRVHTSYH 653

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      +SDP+   I     I   +R   IA  G+ L+ AD + IE R++A  + +
Sbjct: 654 QALTATGRLSSSDPNLQNIPIRGEIGRQIRKAFIAPAGRVLLAADYSQIELRLMAHFSQD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G+D++  T A    +A   VT DQR   K +   L Y        +    T
Sbjct: 714 DALLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFT 773

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                               ++++++ +     +P                     +   
Sbjct: 774 R-------------------QESQDYIKQYFHRYP------------------GIYEYMQ 796

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R  +L   L Q F  T+                                GR L   D+  
Sbjct: 797 RTRQL--ALEQGFVDTLF-------------------------------GRRLYTPDID- 822

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDE 631
                N   R+          L     Q  + DI+   M+   K        ++L VHDE
Sbjct: 823 ---ARNMMVRKAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQARLLLQVHDE 874

Query: 632 IVCETPDTDEFNAS-MLYHLMT 652
           +V E  +      +  L  +M 
Sbjct: 875 LVFEVDENIADELAPQLAEVME 896


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/673 (18%), Positives = 212/673 (31%), Gaps = 165/673 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQVLKEALENT-----DVT 67
           D    G+        ++ F+F F++         H    V PQV  EA +          
Sbjct: 339 DTETTGLD--TRSAKMVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEAAKKAIEKLMRHR 396

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           IV  N  F+ ++L +   ++ PI     T++LA      S +     A K    +M+  K
Sbjct: 397 IVGQNLKFDLSLLYSHLEME-PIEPEADTMILAWLLDPGSRVGLDILAQKFLGYQMKSFK 455

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--------- 178
           E +    KGE    +          A      Y   D   TR+++ RL  L         
Sbjct: 456 ETVK---KGEDFSSV----------ALEEAAFYAAEDAWATRQLYFRLTELFKKGGLEHL 502

Query: 179 ----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E     +   +   G  VD     +L + +  E  +L QE+ +L  G   + +
Sbjct: 503 LKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLA-GTEFNIK 561

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF   GL     T+T     + VL +     P   ++   R    +     +
Sbjct: 562 STQQLGNVLFGTLGLKGGKKTKTGYSTNESVLRNLIGEHPIVEKILEYR-EHQKMLSTYV 620

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           + L++    D                            P   R H    Q  T      +
Sbjct: 621 DPLLKLAEKD----------------------------PE-GRIHTTFVQTGTATGRLAS 651

Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            DP+   I     +   VR   +A EG +L   D + IE R+LA  +G+    +AFE GE
Sbjct: 652 KDPNLQNIPVRSELGRRVRRAFVAQEGFRLASIDYSQIELRLLAHFSGDAALREAFEKGE 711

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D+++ T  + F    A     +R   K +   L Y  G+   +K+A   G+         
Sbjct: 712 DIHMATAIKLFGPEEAAA---KRNFAKSINFGLLYGMGS---RKLADELGITTKEA---- 761

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                   K+      +    + + L Q
Sbjct: 762 ----------------------------------------KEIIEAYFAAFPTVRSYLEQ 781

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             +Q  E G      +RR V       +  + ++     R                    
Sbjct: 782 IQQQAKEQGYVETLLRRRRV----FDYEGASGMMKAAILRE------------------- 818

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT- 639
                         + Q  + D++   M++             ++L +HDE++ E P+  
Sbjct: 819 ----------AVNTVFQGSAADLIKLAMLDIDTMIREEGLEARMLLQIHDELIFEIPEAQ 868

Query: 640 DEFNASMLYHLMT 652
            E  A+   H M 
Sbjct: 869 AEETAARFRHTME 881


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/583 (16%), Positives = 193/583 (33%), Gaps = 83/583 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70
           D    G+   A +V +I  AF ++           +      + +  +   E+  +  V 
Sbjct: 377 DTETTGLK--ALEVELIGIAFSYEIGKGYYVSFPENQEETKAILEEFRPFFESEMIEKVG 434

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
           HN  ++  VL    N ++P+   +   ++A     P         A    +       EL
Sbjct: 435 HNLKYDIKVLS---NYNMPVKGKLFDTMIAHYLINPDMRHNMDVLAETYLNYHPVSITEL 491

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I +  K      L  R  P   +      EY   D  +T ++ +               +
Sbjct: 492 IGKKGK----NQLSMRVVPIKDQ-----TEYAVEDADITYQLKQHFTKELDSGNVTELFN 542

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VD      L+  +  +  +L++E+     G   +    ++L
Sbjct: 543 KVELPLVSVLTAMEIEGINVDTNFLKQLSTALTDDINRLEKEIYEQA-GEEFNIASPKQL 601

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF    L      T+T    T + +LS   K       +   R              
Sbjct: 602 GIVLFENMKLVDKPKKTKTGQYKTGEDILSFLAKEHKIIRDIQEYRQY------------ 649

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                               +         P +   +  R H +  Q +       +++P
Sbjct: 650 -------------------KKLQSTYVDALPNEINKKTGRIHTQYMQAVAATGRLSSNNP 690

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   +   E   L+ AD + IE R++A ++ E+  + AF+ GED+
Sbjct: 691 NLQNIPIRTERGREVRKAFVPKDENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDI 750

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T A+ F V    VT++QR+  K +   + Y   A     +++ T L+      L+ T
Sbjct: 751 HASTAAKVFGVDINDVTREQRSNAKTVNFGIVYGVSAF---GLSNQTDLSRGEAKELIDT 807

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                   +     +       + A E  ++ T   R ++  +  +SR + + +   +  
Sbjct: 808 YY------ETYPKLKAYMSAQVDFAREHGYVETVLNR-RRYLKDINSRNAMVRSGAERNA 860

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
                 G A    K   + +      +     ++L     LV+
Sbjct: 861 VNAPIQGSAADIIKLAMINIHNRFIQEGFKSKMLLQVHDELVF 903


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
          Length = 923

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+     E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +  G   +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    E+++N+ +   + +P                     +  
Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT--DEFNASMLYHLM 651
           E+V E      DE +   +  +M
Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899


>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 934

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 113/693 (16%), Positives = 203/693 (29%), Gaps = 163/693 (23%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   PV+L D          L   L 
Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQL-DRTQALA---QLAPLLT 416

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  +  +  ++  V++      + +  +    +L        +          +   
Sbjct: 417 DPAVRKLGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 463

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
           M+   +    +   K E       +  P  + +      Y   D  +T  + + L P   
Sbjct: 464 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLT 523

Query: 180 ----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  L  +   I   G CVD A     +  +        Q+   L  G 
Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 582

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 583 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 630

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L++ G ++         P    P+  R H    Q    
Sbjct: 631 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 671

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 672 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 731

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 732 AFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAF---GLARQLGIGRG 788

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                           +A+++       +P   + D    T     ++  R         
Sbjct: 789 ----------------EAQDYIALYFSRYP--GVRDFMETT-----RQQAR--------- 816

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                + + +T+         +R  +  +                     +  G  R+ +
Sbjct: 817 ----DKGYVETV-------FGRRLYLDFINAGSQG---------------QRAGAERAAI 850

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634
           N                     Q  + DI+   M+N             ++L VHDE+V 
Sbjct: 851 NAPM------------------QGTAADIIKRAMVNVDGWIADHAQRAKMILQVHDELVF 892

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           E   D  +   S +   M         +PL  +
Sbjct: 893 EADVDFVDTLLSEVTTRMAGAAE--LRVPLVVD 923


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/701 (16%), Positives = 207/701 (29%), Gaps = 170/701 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET S   +          D  ++   F  ++H            +P   +EAL
Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYV------AIPNDREEAL 391

Query: 62  ----------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK 110
                     E+  +  +  N  ++  VLK   N  + +   +   +LA     P     
Sbjct: 392 QYVNIFKPVYEDPSILKIGQNLKYDYEVLK---NYGVTLGGKMFDTMLAHYVIQPELHHN 448

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169
               A  L   K     ELI              +++ + R+   +   EY   D  +T 
Sbjct: 449 MDYMAETLLHYKTIHIDELI----------GPRGKHQKSMRDLDPKDVYEYAAEDADITL 498

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           ++   LEP   +          E  L  +   +   G  +D    H  + I      +L+
Sbjct: 499 QLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLE 558

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAI 274
           Q++     G   +    +++   LF +   +     T+T    T + VL S +   P   
Sbjct: 559 QQIYEKA-GETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTNEEVLQSLRAKHPIVA 617

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +                                 + G  +         P     R   
Sbjct: 618 DIL-------------------------------DYRGLKKLLGTYVEALPKLINKRTGH 646

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H   +Q +T      +SDP+   I         +R C +  +      AD + IE R++
Sbjct: 647 IHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIM 706

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++G++  ++AF  G D++  T A+ ++   A VT ++R   K     + Y        
Sbjct: 707 AHLSGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTY--- 763

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A    ++      L+      E +       R   E   E A    +  T   R ++ 
Sbjct: 764 GLAQRMEIDNREARELI------EGYFATFPKVRAYMEQAKEEARRKGYAETLFGR-RRY 816

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                S+   +     +        G      K   +                       
Sbjct: 817 LPDITSKNGTVRGFAERNAINAPIQGSEADIIKIAMI----------------------- 853

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                          R   R         ENI                      ++L VH
Sbjct: 854 ---------------RIWQRFR------AENIR-------------------SKMILQVH 873

Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
           DE+     PD  E    ++   M    ++   +PL A+ G+
Sbjct: 874 DELNFSVYPDEKERVEKIVLEEMQG--AYQLQVPLIADAGW 912


>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 933

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/568 (17%), Positives = 170/568 (29%), Gaps = 85/568 (14%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   PV+L D  H       L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTHALA---QLAPLLT 415

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V  +  ++  V++      + +  +    +L        +          +   
Sbjct: 416 DPAVRKVGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 462

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           M+   +    +   K E       +  P  + +      Y   D  +T  +   L P  +
Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLA 522

Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E             L  +   I   G CVD A     +  +        Q+   L  G 
Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 582 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHELP------------ 629

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L++ G S+         P    P+  R H    Q    
Sbjct: 630 -------------------RVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 730

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 731 AFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL 548
                +A       G A    KR  V +
Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVKV 868


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/600 (17%), Positives = 181/600 (30%), Gaps = 79/600 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH-----PV-ELWDCVHDPVMPQV-----LKEALE 62
           +D     +  ++    ++  +  +        PV    D   +  +P+      LK  LE
Sbjct: 336 VDTETTDLHPHS--AELVGISIAWQPMVAYYIPVGHALDAAPEGQLPRADVLAALKPLLE 393

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + ++     N  ++  + K      I +       +L         L     A  L +  
Sbjct: 394 SPEIGKTGQNIKYDYQIFKRY---HITMQGIERDSMLYSYL-----LYGANRAHNLDAIA 445

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            E   EL     K E       +     +    L   Y   D  VT +    + P   +E
Sbjct: 446 TE---ELGRTTIKFEDVAGKGRKRIRFDQVPLHLAAPYACEDAEVTWQAAASMAPNLDRE 502

Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                      + L  +   +   G  VD  +  T++      R +L +E+  L  G V 
Sbjct: 503 PGLKRLYETIERPLIPVLAEMEYAGVLVDRDVLSTMSADFSKRRARLVEEIHELA-GEVF 561

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L   LF + G+     T++     +S   KL     ++               
Sbjct: 562 NVNSTQQLGHILFEKMGIKGGKRTKSGFSTDVSVLSKLADDGEKIPQQ------------ 609

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                           L +   ++              P   R H   +Q +T      +
Sbjct: 610 ---------------VLAYRSLTKLQSTYTDALVALIHPYTGRVHTSYNQAVTLTGRLSS 654

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I         +R+  IA  G  L+ AD + IE RVLA M       +AF  G 
Sbjct: 655 SDPNLQNIPIRTEEGRAIRTAFIAPAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGL 714

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  F V  AQVT + R + K +   L Y         +A   G+  N     +
Sbjct: 715 DIHAATAAELFGVPLAQVTGEHRRMAKTINFGLVYGMSPF---GLAKRLGIQNNEARAYM 771

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
               A   ++           +   H   +   G  C       R  ++    L     +
Sbjct: 772 DLYFAR--YDGVRQHMDATIRDARAHGFVETLGGRRCP-----IRDINATQRSLREFAER 824

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                   G A    K   + L    +       ++L     LV        + +    R
Sbjct: 825 TAINAPLQGSASDLIKLAMIRLHGALQAGGFKARMVLQVHDELVLEVPDKELAAVKEVVR 884


>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 997

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 199/642 (30%), Gaps = 155/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           LK  LE+  V  +A N  ++  ++       + +  +  T++++     G P        
Sbjct: 470 LKPLLEDRSVLKIAQNLKYDLVIMSRY---GVDVAPFDDTMLISYVLDAGTPHGHGMDAL 526

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A K       + K++          + +       H             D  VT  ++  
Sbjct: 527 AEKWLGHTPLQLKDVTGSGKSSVGFDQVDIDKATAH----------AAEDADVTLRLWLV 576

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L+P  +           E+ L  +   +  RG  VD  +   L+  +     +L++E+  
Sbjct: 577 LKPRLAAKGLVSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQ 636

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF   GL     T+T    T  ++L            ++ + 
Sbjct: 637 LI-GERINIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDW 695

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 ++         P    P   R H   
Sbjct: 696 RQL-------------------------------TKLKSTYTDALPGFIHPDTKRVHTSY 724

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
               T      +SDP+   I         +R+  I  +  +LV AD + IE RVLA +A 
Sbjct: 725 ALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFITDKSHRLVSADYSQIELRVLAHVAE 784

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  G D++  T +  FNV    +  + R   K +   + Y   A     +A+ 
Sbjct: 785 IPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQ 841

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +      + +K      ++ +     R   E    +A E  F+ T             
Sbjct: 842 LSIPREEAGNYIK------KYFERFPGIRDYIEETKAYAREHGFVET------------- 882

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                   I  +R   P +             PS R+   R   
Sbjct: 883 ------------------------IFGRRIHYPDIRSSN---------PSLRAFNERASI 909

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           N R                         Q  + DI+   M+   +A         ++L V
Sbjct: 910 NARL------------------------QGTAADIIRRAMIRMEEALERAGLSARMLLQV 945

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667
           HDE++ ET + + E    ++ H+M +   P+ +  +PL  + 
Sbjct: 946 HDELIFETVEAEVEATIPVVRHVMENAAMPAVSMSVPLHVDA 987


>gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
 gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
          Length = 937

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/653 (13%), Positives = 175/653 (26%), Gaps = 156/653 (23%)

Query: 46  DCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           D     +  Q     LK  LE+  +  +  N  ++  +        I +     T++++ 
Sbjct: 400 DLADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFAR---RGIDVAPIDDTMLMSY 456

Query: 102 SNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
           +             + +  +      K L+                    R        Y
Sbjct: 457 AMHAGQHGHGMDTLSERYLNHTPIPIKPLL----------GTGKSAITFDRVPIDDAVAY 506

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +++  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 507 AAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSNA 566

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+  L  G   +    ++L   LF + G+      +T    T   +L   
Sbjct: 567 FAQKMAGLEAEIHELA-GQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDL 625

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                    V + R                                 S+           
Sbjct: 626 ATEHALPGLVLDWRQL-------------------------------SKLKSTYTDALQD 654

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
                  R H    Q   +     ++DP+   I         +R   +  EG  L+  D 
Sbjct: 655 HINAETGRVHTSYVQTGANTGRLASTDPNLQNIPIRSEEGRRIREAFVPEEGNVLLALDY 714

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +AG     +AF  G+D++  T +  FNV   ++T D R   K +   + Y
Sbjct: 715 SQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIY 774

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                    +A    +        +                                   
Sbjct: 775 GISGF---GLARNLRIPRAEAQGFID---------------------------------- 797

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                     +   R   +   + +      E+G       R+               + 
Sbjct: 798 ----------RYFERFPGIRRYMDETVAFAKEHGHVQTLFGRK---------------IH 832

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617
            P   +   R     R+ +N                    +Q  + D++   M+      
Sbjct: 833 TPEISAKGPRAGFAKRAAINAP------------------IQGTAADVIRRAMIRMPAAI 874

Query: 618 TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
                 ++L VHDE++ E P+   E        +M +    A    + L  + 
Sbjct: 875 AHLPARMLLQVHDELLFEVPEAAVEDTIETARQVMETAADPAVHLDVKLVVDA 927


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 95/595 (15%), Positives = 180/595 (30%), Gaps = 150/595 (25%)

Query: 90  IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
             R     +LA     PS   L     ++K   Q++  G++    FC       +  R  
Sbjct: 409 PVRAGFDTMLAAYLLDPSVSNLDLAALSIKYLGQELSPGED-YRSFCAQAD---IILRLV 464

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
           P   E      E    D+                E  L ++   +   G  +D      +
Sbjct: 465 PVLHEKLA---ELNMLDLYF------------DVEMPLLHILADMEFSGVKLDKEYLEAM 509

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLS 264
           +  +  E  ++  ++  L  G   +     +L T LF + GL +   T+T       VL 
Sbjct: 510 SVDLSTEIDRITGDIYRLA-GEEFNINSTRQLGTILFEKLGLPVIKKTKTGYSTDVEVLE 568

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
           +  +      +V + R                                  +         
Sbjct: 569 TLAERHEIVARVLHYRQL-------------------------------VKLKSTYVDGL 597

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVV 378
            P   P   + H   +Q +T      +++P+   I         +R   + SE G  ++ 
Sbjct: 598 IPLINPVTGKVHTTFNQTVTATGRLSSTEPNLQNIPIRMEEGRRIRKAFVPSEPGWIILS 657

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++G++  ++AF   ED++  T A  F V+  +VT + R+  K +   
Sbjct: 658 ADYSQIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAVNFG 717

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y         +A    ++       ++                               
Sbjct: 718 IVYGISDF---GLAKNISVSRKEARQYIE------------------------------- 743

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                           +R + +   L +      E G       RR             L
Sbjct: 744 -------------NYFARYAGIKKYLEETVRLAREQGYVTTLLNRRRY-----------L 779

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
             +L   R++        R+ +NT                   +Q  + DI+   M+   
Sbjct: 780 PDILSPNRNIRSF---GERTAMNTP------------------IQGSAADIIKLAMVRVA 818

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                      ++L VHDE++ E P  +    + +    M +       +PLK +
Sbjct: 819 DCLKKEGLKARMLLQVHDELIFEAPPEELPKVTGIVRECMENTVK--LTVPLKVD 871


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 133/698 (19%), Positives = 222/698 (31%), Gaps = 165/698 (23%)

Query: 1   MATL---FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVM 53
           M TL     D ET S   L             ++  +F ++           D      +
Sbjct: 366 MKTLDSFAFDTETTSLDPLE----------AKLVGISFSWEKGKGYYLPFPEDFDDAKNI 415

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
                E   N  +  + HN  ++  VL       I I       ++A     P     L 
Sbjct: 416 ILEFAELFSNPAIEKIGHNIKYDLKVLYKY---GIRIDGENFDTMIAHYLLNPDMRHNLD 472

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E       K    + LI +  K + +                   EY   D  VT +
Sbjct: 473 VLSET--YLGYKPVSIETLIGKKGKNQKN---------FREVDLIEQTEYGTEDSDVTFQ 521

Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +    EP   K          E  L  +  T+   G  +DV     L++    +  +L+Q
Sbjct: 522 LKNIFEPELEKVSLTKLFRNIEMPLMKVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQ 581

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           ++ S   G   +    ++L   LF +  L LE  ++ T     S+ +++           
Sbjct: 582 KIFSEA-GEEFNLNSPKQLGDILFDK--LKLEPKSKKTKTGQYSTGEEI----------- 627

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              S+ A   +            ++  L +    +         P    P   R H    
Sbjct: 628 --LSKLAHYPI------------IKNILHYRQLQKLKSTYIDALPELVNPVTQRVHTTFA 673

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
           Q +       + +P+   I         +R   IA     K++ AD + IE R++A MA 
Sbjct: 674 QTVAATGRLSSVNPNLQNIPIRTEEGQQIRKAFIARNPEYKIISADYSQIELRLIAQMAQ 733

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +KAF+ GED++ +T A+ F VA  +VT++QR+  K +   + Y   A     +A  
Sbjct: 734 DPVMVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIYGVSAF---GLAQQ 790

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           TGL+      L+                    E +P                        
Sbjct: 791 TGLSNTEAKKLIDA----------------YYETYPT----------------------- 811

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                L   + Q      ENG      +RR                         Y    
Sbjct: 812 -----LKKYIDQQIASARENGFVETLMRRRR------------------------YLKDI 842

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           N+R+  NT      R            +Q  + DI+   M+   K         ++L VH
Sbjct: 843 NSRN--NTVRSHAERN------AVNAPIQGSAADIVKLAMIQIQKELDKKFATKMLLQVH 894

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V + P ++ E  + M+   M S       +PL AE
Sbjct: 895 DELVFDAPISEVEEVSKMIKTTMESVIQ--MEVPLVAE 930


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 123/683 (18%), Positives = 214/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
              ID ET + +D       + AE   ++ F+  FD H        HD            
Sbjct: 348 HFAIDTET-TNLD------YRIAE---LVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREH 397

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
           + + +K  LEN  V  + H+  ++  +     N  I I  W    +LA      +A    
Sbjct: 398 VLEQIKPILENEQVKKIGHHLKYDAHI---FANHGITIQGWYFDTMLASYVLNAAATRHG 454

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 455 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------ELEVAAHYAAEDAHVTYR 504

Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++ L             L + E  +  +   + + G  +D A    L+         L+
Sbjct: 505 LYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQTLE 564

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   L  G   +    +++   LF   GL      + T     S+++ +  +       
Sbjct: 565 NQATELA-GEAFNIASPKQVGEVLFDRLGL---KGGKKTATGQYSTSESILEKIEHPLAE 620

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 621 --------------------------VILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSY 654

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 655 HQALTATGRLSSTDPNLQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQ 714

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +    VT DQR   K +   L Y  G   F  +   
Sbjct: 715 DDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY--GMSEF-GLTRQ 771

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G                   E++ ++     + +P        +    ER ++  R   
Sbjct: 772 LGFTR----------------EESRSYIARYFQRYP-------GVLDYMERTRQIAR--- 805

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      Q F +TI                                GR L   D+ 
Sbjct: 806 ----------EQGFVETIL-------------------------------GRRLYTPDIL 824

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
            N    N   +Q          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 825 AN----NKMIKQAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQAKLLLQVHD 875

Query: 631 EIVCETPD--TDEFNASMLYHLM 651
           E+V E  +  TDE +   +  +M
Sbjct: 876 ELVFEADETITDELS-KQIAEVM 897


>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 933

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 99/568 (17%), Positives = 170/568 (29%), Gaps = 85/568 (14%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   PV+L D  H       L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTHALA---QLAPLLT 415

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V  +  ++  V++      + +  +    +L        +          +   
Sbjct: 416 DPAVRKVGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 462

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           M+   +    +   K E       +  P  + +      Y   D  +T  +   L P  +
Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLA 522

Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E             L  +   I   G CVD A     +  +        Q+   L  G 
Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 582 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHELP------------ 629

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L++ G S+         P    P+  R H    Q    
Sbjct: 630 -------------------RVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 730

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 731 AFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL 548
                +A       G A    KR  V +
Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVKV 868


>gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus parainfluenzae T3T1]
          Length = 932

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/531 (16%), Positives = 167/531 (31%), Gaps = 68/531 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEA 115
           LK  LEN  +  V  N  ++ T+        I +       +L +              A
Sbjct: 411 LKPILENPTIQKVGQNFKYDLTIFAR---NGIDVQGVAFDTMLESYVLNSTGRHNMDDLA 467

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +    +E+  +     T   +       +           +        ++++L
Sbjct: 468 KRYLGHQTISFEEIAGKGKNQLTFNQIQLEQAAEYAAEDADVTMKLQQ------VLWEKL 521

Query: 176 EPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L  +   +  RG  +D       +  +    ++L+++   L  G
Sbjct: 522 SKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSELEEQAYVLA-G 580

Query: 229 LVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    ++L+  LF + GL +         +T + VL            +  +R    
Sbjct: 581 QPFNLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHELPKVLVEHR---- 636

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                      G S+         P    P+  R H    Q +T
Sbjct: 637 ---------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVT 669

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R   IA EG  +V AD + IE R++A ++ +Q  +
Sbjct: 670 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLI 729

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++ +T A  F VA  +VT +QR   K +   L Y   A          GL+ 
Sbjct: 730 NAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAF---------GLSR 780

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                     S  + +       +    +  E A    ++ T   R +      +S    
Sbjct: 781 QLSIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGR-RLYLPDINSSNGM 839

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                 +        G A    KR  + L    ++  ++ +++     LV+
Sbjct: 840 RRKAAERVAINAPMQGTAADIIKRAMIQLDQKLQNDPDIAMIMQVHDELVF 890


>gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183]
 gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183]
          Length = 870

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 111/605 (18%), Positives = 193/605 (31%), Gaps = 142/605 (23%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +  +LK+     D+T   +N    R    A  N  I I      L LA        
Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLK--RDC-HALLNAGIVIREISYDLALAEH------ 398

Query: 109 LKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L   G  +   S  +  G  E   RF K   +  L     P   E +  FGE+      +
Sbjct: 399 LTNGGGKISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQY--FGEFVAYLPII 456

Query: 168 TREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              I + +        LS  E  L  +  ++   G  +DV     L  + + E   L +E
Sbjct: 457 KDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEE 516

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  L+ G   + +  ++L   L+ E GL   D  ++T   VL + +   P   ++     
Sbjct: 517 IYDLSGG-PFNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLA--- 572

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                       F    +         P Q      R H   DQ
Sbjct: 573 ----------------------------FRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQ 604

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
                      DP+   I         +R     SE     + AD + IE R LA ++ +
Sbjct: 605 TGAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQD 664

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    AFE+GED++  T ++ F+V   QV+K+QR   K +   + Y   A     +A   
Sbjct: 665 KSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAF---GLAKVL 721

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +++     L++       + +  +F         + A +DL + T   R          
Sbjct: 722 KISIGEAQELIQA--YFSRYPEIAHFVEETI----QQAAKDLRVTTMLGR---------E 766

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R+ + WNE                                       P  R+        
Sbjct: 767 RIIDSWNEF--------------------------------------PGSRAAS------ 782

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
            R  +NT  +                    + +++   M++ ++A         ++L +H
Sbjct: 783 GRFAVNTRIQ------------------GSAAELIKLAMLDISQAIKQQQMKSRMLLQIH 824

Query: 630 DEIVC 634
           DE++ 
Sbjct: 825 DELLF 829


>gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
 gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
          Length = 1012

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 106/631 (16%), Positives = 190/631 (30%), Gaps = 130/631 (20%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            + L+  LE+  V  +  N  F   +L     L +  H  +  +  A   G   A      
Sbjct: 484  EALRPLLESPGVLKIGFNIKFTAVLLAQH-GLTLQNHDDVQLMSYALDAGR-HAHGLDAL 541

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            A      K     E+I                    + A      Y   D  V   +++ 
Sbjct: 542  AENWLGHKALSYGEVI----------GSGKAKLGFDQVAIDRATCYAAEDADVALRLWRI 591

Query: 175  LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            L+P  + E+           L  +   +  RG  +D  +   L+        +++ E+  
Sbjct: 592  LKPRLTAERMMTVYETLERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIRE 651

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +  G   +    ++L   LF + GL     T+T      +S      +    F       
Sbjct: 652  IA-GEELNIGSPKQLGDVLFGKMGLPGGKKTKTGAWSTSASILDELAEEGHQFP------ 704

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                R  L +   S+         P    P+  R H       T
Sbjct: 705  --------------------RKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAAT 744

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  +++P+   I         +R   IA+ G KLV AD + IE R+L+ +A      
Sbjct: 745  TTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALR 804

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
             AF+ G D++  T +  F V    +  + R   K +   + Y   A     +A+  G+  
Sbjct: 805  TAFQDGIDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAF---GLANQLGIPR 861

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                  +K     E +    ++    +E    H   +                       
Sbjct: 862  EEAGAYIK--KYFERFPGIRDYMDATKEFCRAHGYVE----------------------- 896

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                               +  ++   P +             PS R+   R   N R  
Sbjct: 897  ------------------TLFGRKCHYPDIKASN---------PSIRAFNERAAINARL- 928

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                           G   + I +A+ R    E  + A +    ++L VHDE++ E PD 
Sbjct: 929  --------------QGTAADIIRRAMVR---MEDALAAKQLSAQMLLQVHDELIFEVPDD 971

Query: 640  D-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            +      ++  +M   P  A    +PL+ + 
Sbjct: 972  EVAATLPVVQQVMQDAPFPAVLLSVPLQVDA 1002


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 99/600 (16%), Positives = 187/600 (31%), Gaps = 90/600 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEA 60
            +D ET +  D         A    ++  +F  +++         D      +  + K  
Sbjct: 351 SLDTET-TSTD---------AISAELVGLSFSVEENRAFYVAIPADRQEATRIVGIFKPL 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
            EN  +  +  N  ++  VL       + +   +   ++A     P         A  L 
Sbjct: 401 YENEQILKIGQNIKYDYEVLSHY---GVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLL 457

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +    +EL+         +    RN  +         EY   D  +T  +   LEP  
Sbjct: 458 GYRTIHIEELLG-------PKGKKQRNMRDLSP--TDIYEYAAEDADITLRLKHVLEPHL 508

Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +          E  L  +   +   G C+D       ++I      + +QE+     G 
Sbjct: 509 KELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEA-GE 567

Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             +    +++   LF +   +     T+T    T + VL S +   P             
Sbjct: 568 TFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVV----------- 616

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                               R  L + G  +         P    PR    H   +Q  T
Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQT 656

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R C I  +G     AD + IE R++A ++G++  +
Sbjct: 657 STGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMM 716

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A+ ++    +VT  QR   K     + Y         +A   G+  
Sbjct: 717 EAFREGHDIHRATAAKIWHEDIEKVTDAQRKKAKQANFGIIYGITTY---GLAQRMGIPN 773

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +    L++      ++       +   E   E A    +  T   R ++     +SR + 
Sbjct: 774 SEARELIQ------DYFHTFPKVKAYMEQAKETARAKGYAETLFHR-RRYLPDINSRNAT 826

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRS 578
           +     +        G      K   V +    K++     ++L     L +      R 
Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886


>gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193]
 gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193]
          Length = 935

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/651 (15%), Positives = 176/651 (27%), Gaps = 160/651 (24%)

Query: 46  DCVHDP-----VMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D           MP     ++LK  LE+  V  +  N  ++  +L       I +     
Sbjct: 392 DLFGGEGLAEGQMPLEQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY---GIDVAPIDD 448

Query: 96  TLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           T++++ +             + +    K    K L+                    R   
Sbjct: 449 TMLMSYALHAGEHNHGMDILSERYLDHKPIPIKPLL----------GTGKSAITFDRVPI 498

Query: 155 RLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALA 204
                Y   D  +T  +++  +P            + E+ L  +   +   G  VD    
Sbjct: 499 ADAVPYAAEDADITLRLWQHFKPELHQRQVTVVYETLERPLVPVLAEMERNGIKVDRDTL 558

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQ 260
             ++     +   L+ E+ +L  G   +    ++L   LF +  L      +T    T  
Sbjct: 559 SRMSNAFAQKMAALEDEIHALA-GQPFNVGSPKQLGEILFDKLELPGGKKGKTGAYATGA 617

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            +L            V + R                                 S+     
Sbjct: 618 DILEDLATEHALPALVLDWRQL-------------------------------SKLKSTY 646

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375
                    P   R H    Q   +     +SDP+   I         +R   +  +G  
Sbjct: 647 TDALQDHINPDTGRVHTSYIQTGANTGRMASSDPNLQNIPVRSEEGRRIREAFVPEQGNV 706

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D + IE R+LA +AG      AF  G+D++  T +  F+V   ++T D R   K +
Sbjct: 707 LLSLDYSQIELRILAHVAGIDALKAAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAI 766

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y        +                          +A+ F     E  P     
Sbjct: 767 NFGVIYGISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP----- 802

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                          R    R  E        + QT+   K                   
Sbjct: 803 -------------GIRAYMDRTVEF--AKEHGYVQTLFGRK------------------- 828

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM- 614
               +  P   +   R     R+ +N                    +Q  + D++   M 
Sbjct: 829 ----IHTPEIAAKGPRAGFAKRAAINAP------------------IQGTAADVIRRAMV 866

Query: 615 ---MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL 661
                       ++L VHDE++ E P+   E        +M +    A  L
Sbjct: 867 KMPPAIAHLPARMLLQVHDELLFEVPEAAVEETIETARRVMENAADPALHL 917


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/597 (15%), Positives = 200/597 (33%), Gaps = 81/597 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70
           D    G+        ++  AF ++           D      + + L+   E+  +  + 
Sbjct: 377 DTETTGLNP--LTAELVGIAFSWEASKGFYIPFPADKTEAQEIIEQLRPFFEDEAIEKIG 434

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            N  ++  VL      ++ +       +LA     P           L+   +      I
Sbjct: 435 QNLKYDIKVLDKY---NVKVKGKCFDTMLAHYLINP---DMRHNMEVLAETYLNYTPVSI 488

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LSS 180
                 +    L  R+ P   +      EY   D  +T ++ ++ +P           + 
Sbjct: 489 TELIGKKGKNQLNMRDVPLPNQ-----TEYAAEDADITYQLAQQFKPELEEAKTQELFTD 543

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +   G  +D    ++L + +D +  KL+ ++     G   +    ++L 
Sbjct: 544 IEIPLLHVLADMELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEA-GEEFNIASPKQLG 602

Query: 241 TWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
             LF +  L      T+T    T + VLS   K       V + R               
Sbjct: 603 DILFDKLALVKKPKKTKTGQYSTAEDVLSYLAKDHKIIENVLSYR--------------- 647

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                           G ++         P Q      R H +  Q +       +++P+
Sbjct: 648 ----------------GLAKLKSTYVDALPAQVEESTGRVHTDYMQTVAATGRLSSNNPN 691

Query: 356 PLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         VR   +   +   LV AD + IE R++A ++ E   ++AF+ GED++
Sbjct: 692 LQNIPIRTERGRQVRKAFVPRNKEYVLVAADYSQIELRIIAALSEETTMIEAFKNGEDIH 751

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            +T ++ FNV   +VT++QR+  K +   + Y   A     +++ T L+      L+ T 
Sbjct: 752 ASTASKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRAEAKELIDTY 808

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              + +   +++   + +   ++      +G      ++  +  +   + +     +   
Sbjct: 809 Y--KTYPKLKSYMGGLVDFARDNGYVQTVLGR-----RRYLKDINGSNAIVRGAAERNAV 861

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTTR 585
                G A    K   + +    ++      ++L     LV+         + T  +
Sbjct: 862 NAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVFDVYKPELEEMKTLIK 918



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 22/149 (14%)

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +A E      K     K     LV   +D   +  +L   R L       + +  N   R
Sbjct: 800 EAKELIDTYYKTYPKLKSYMGGLVDFARDNGYVQTVLGRRRYL------KDINGSNAIVR 853

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCET--P 637
                           +Q  + DI+   M+N  K   +      ++L VHDE+V +   P
Sbjct: 854 GAAERNA-----VNAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVFDVYKP 908

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           + +E   +++   M +  ++   +PL  E
Sbjct: 909 ELEEMK-TLIKSEMEN--AYKLEVPLDVE 934


>gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 976

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 109/694 (15%), Positives = 199/694 (28%), Gaps = 168/694 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMPQ---- 55
            +D ET S   +          D  ++       +       + L          Q    
Sbjct: 384 SLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLSIE 433

Query: 56  ----VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
                L+  +E+        NS F+R +    FN  + +       +LA           
Sbjct: 434 DVFSKLRNWIEDPRKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN------ 484

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                      + E    +  F K  + +    +NK            YC  DV +T +I
Sbjct: 485 -----NQEKHGLSEISFRLFGF-KPPSFKETVGKNKDFSFVDIGEASIYCGYDVFLTFKI 538

Query: 172 FKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            K  +                 E  L  +   +   G  +D+     L++ +      ++
Sbjct: 539 VKIFKERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIE 598

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274
            ++  L      +    ++L   LF +  L  +   +T     T   VL           
Sbjct: 599 SKVYELA-EENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQ 657

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R                                 S+         P     +  R
Sbjct: 658 HLIKHR-------------------------------TLSKLLSTYIDALPNLINEKTGR 686

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H   +Q  T      +S+P+   I      S  +R   +  +  KL+ AD + IE R+L
Sbjct: 687 VHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F     Q++ ++R +GK +   + Y  G    +
Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSEERRVGKTINFGVIYGMG---IK 801

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           K A +TG++       +      E +     F     E     A+   ++ T   R ++ 
Sbjct: 802 KFARSTGVSTPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE- 854

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                     K DKN L  ++       
Sbjct: 855 -----------------------------------------FKFDKNGLGRLIGKDPY-- 871

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG----- 621
                          +   R       L       +Q  S DI+   M+   K       
Sbjct: 872 -----------EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNV 920

Query: 622 -YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTS 653
              ++L VHDE++ E   D+ E    ++   M  
Sbjct: 921 PAKMLLQVHDELLFEVEQDSLEITTKLVKKTMED 954


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/634 (16%), Positives = 184/634 (29%), Gaps = 154/634 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+     +  N  ++  V      + +       T++ +              A +L S
Sbjct: 420 LEDASRPKLGQNLKYDVHVFANH-GVKLR-GVAHDTMLQSYVLASHRNHGMDSLAERLLS 477

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
            K    +E+    C     +  +D      +       EY   D  VT  + +++ P   
Sbjct: 478 LKTITYEEV----CGKGASQIGFD------QIDLARATEYAAEDADVTLRLHRKMFPQVE 527

Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  +  + Q +   G  +D       +  +      L+Q       G 
Sbjct: 528 AAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRMLALEQAAYE-AAGQ 586

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   LF +  L +   T     +T + VL    +  P    +         
Sbjct: 587 PFNLGSPKQIGEILFSQMKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL-------- 638

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                   + G ++         P    P+  R H    Q    
Sbjct: 639 -----------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTSYGQATAV 675

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +++P+   I         +R   IA  G  +V AD + IE R++A ++G++  L+
Sbjct: 676 TGRLASTEPNLQNIPVRTEEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLR 735

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  GED++  T    F V    V+ +QR   KV+   L Y   A     +A   G+   
Sbjct: 736 AFANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAF---GLAGNLGIERE 792

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                         K    +   R   +
Sbjct: 793 AA--------------------------------------------KHYIDRYFMRYPGV 808

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSY 579
            + + +  +   E G       RR               L LP        R     R+ 
Sbjct: 809 AHYMEETRQTAREQGYVETVFGRR---------------LWLPDINGGSGPRRQAAERAA 853

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDI--VLTVHDEIV 633
           +N                     Q  + D++   M+       + G     ++ VHDE+V
Sbjct: 854 INAPM------------------QGTAADLIKLSMIAVQGWLERDGLQTRQIMQVHDELV 895

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P+ + E     L  LM S       +PL AE
Sbjct: 896 LEVPEHELELVKVRLPELMCSVAQ--LRVPLVAE 927


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/543 (16%), Positives = 181/543 (33%), Gaps = 67/543 (12%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKL 118
           AL+N     +  N  F+  V++      I I   +   ++A     P         A   
Sbjct: 419 ALQNPKSFKIGQNIKFDILVVRKY---GIRIAGPLFDTMIAHYLLNPELRHGMDYLAETY 475

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K    +ELI      +  + L  R+ P          EY   D  +T ++     P 
Sbjct: 476 LKYKTVRIEELIG----PKGRKQLCMRDVPIP-----QVAEYAAEDADITLKLKNYFAPC 526

Query: 179 SSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             KE            L Y+   +   G  +D       ++ +     KL++E+  L  G
Sbjct: 527 LDKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIYELA-G 585

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +  +     ++   LF    L +E+  + T     S+++++  +        MR+    V
Sbjct: 586 IKFNINSARQVGEVLFDH--LKIEEKAKKTKTGSYSTSEEILEK--------MRSKHPVV 635

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            KL                L++ G  +         P    P   + H   +Q +T    
Sbjct: 636 EKL----------------LEYRGLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGR 679

Query: 349 SITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             +++P+   I     +   +R    A  E      AD + IE R++A ++ +   ++AF
Sbjct: 680 LSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIEAF 739

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +G D++  T A+ + +   +VT D R   K     + Y         +A    +     
Sbjct: 740 RSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLNIPRAES 796

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L++     + + D     R   +   E A E  ++ T  +R K+     +S  + +  
Sbjct: 797 KELIE--GYFKTYPD----IRAYMDESIEVAKEKGYVETIYKR-KRFLPDINSHNAIVRG 849

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLN 581
              +        G A    K   V +    + +     ++L     L +    +    + 
Sbjct: 850 YAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDEMEKVK 909

Query: 582 TTT 584
              
Sbjct: 910 QIV 912


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 101/600 (16%), Positives = 191/600 (31%), Gaps = 90/600 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60
            ID ET +  D         A    ++  +F  ++          +      + Q+ K  
Sbjct: 351 SIDTET-TSTD---------AISAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPL 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
            E+  +  +  N  ++  VL       + +   +   ++A     P         A  L 
Sbjct: 401 YESDKIMKIGQNIKYDYEVLTRY---GVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLL 457

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +    +EL+    KG+  + + D +  +         EY   D  +T  +   LEP  
Sbjct: 458 GYQTIHIEELLGP--KGKKQKNMRDLSPTD-------IYEYAAEDADITLRLKNVLEPRL 508

Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +          E  L  +   +   G C+D       ++I      + +QE+     G 
Sbjct: 509 KELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEA-GE 567

Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             +    +++   LF +   +     T+T    T + VL S +  +P             
Sbjct: 568 EFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIV----------- 616

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                               R  L + G  +         P    PR    H   +Q +T
Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALT 656

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R C I  +G     AD + IE R++A ++ ++  +
Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMM 716

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A+ ++V   +VT  QR   K     + Y         +A    +  
Sbjct: 717 EAFREGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTY---GLAQRMDIPN 773

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                L+      E +       +   E+  E A    +  T   R ++     +SR + 
Sbjct: 774 GEAKELI------EGYFRTFPKVQVYMEHAKEVARAKGYAETLFHR-RRYLADINSRNAT 826

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +     +        G      K   V +    KK+     ++L     L +      R 
Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEERE 886


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 199/634 (31%), Gaps = 146/634 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115
           LK  L N ++  +  N  ++ T+     N  I +      T++ + +            A
Sbjct: 430 LKPILLNPEIKKIGQNIKYDLTI---FANYGIELQGVAFDTMIESYTQNSTGRHNMDDLA 486

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    K    +EL  +     T + +                EY   D  VT ++ + L
Sbjct: 487 ARYLGHKTIPFEELAGKGKNQLTFDKI----------EIAKAAEYAAEDADVTMKLHQVL 536

Query: 176 EPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                +E EL  L              I   G  +D     T +  ++    +++  + +
Sbjct: 537 WEKLQQEPELVKLFDEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHA 596

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              G   +    ++L+  LF + GL +   T                Q   +    +   
Sbjct: 597 EA-GQTFNLASTKQLQEILFEKLGLPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEH 655

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R                          G S+         P     +  R H   +Q +T
Sbjct: 656 R--------------------------GLSKLKSTYTDKLPQLINKKTGRVHTSYNQAVT 689

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R   +A EG K+V AD + IE R++A ++ ++  +
Sbjct: 690 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMI 749

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F V   +VT +QR   K +   L Y   +     +++  G+  
Sbjct: 750 NAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIGR 806

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                            +A+ +     + +P           A ++     R+       
Sbjct: 807 ----------------AEAQKYMDLYFQRYP-----------AVQQFMTDIREV------ 833

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               + + + +T+                                GR L   D+ +    
Sbjct: 834 ---AVEKGYVETLF-------------------------------GRRLYLPDIKSG--- 856

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVC 634
            N   R+               +Q  + DI+   M+    A        +++ VHDE+V 
Sbjct: 857 -NAILRKAAERVA-----INAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVF 910

Query: 635 ET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           E      D ++  ++   M    S    +PL AE
Sbjct: 911 EVKADKIDHYSQ-LIKTEMEKAIS--LKVPLIAE 941


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 199/634 (31%), Gaps = 146/634 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115
           LK  L N ++  +  N  ++ T+     N  I +      T++ + +            A
Sbjct: 430 LKPILLNPEIKKIGQNIKYDLTI---FANYGIELQGVAFDTMIESYTQNSTGRHNMDDLA 486

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    K    +EL  +     T + +                EY   D  VT ++ + L
Sbjct: 487 ARYLGHKTIPFEELAGKGKNQLTFDKI----------EIAKAAEYAAEDADVTMKLHQVL 536

Query: 176 EPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                +E EL  L              I   G  +D     T +  ++    +++  + +
Sbjct: 537 WEKLQQEPELVKLFDEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHA 596

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              G   +    ++L+  LF + GL +   T                Q   +    +   
Sbjct: 597 EA-GQTFNLASTKQLQEILFEKLGLPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEH 655

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R                          G S+         P     +  R H   +Q +T
Sbjct: 656 R--------------------------GLSKLKSTYTDKLPQLINKKTGRVHTSYNQAVT 689

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R   +A EG K+V AD + IE R++A ++ ++  +
Sbjct: 690 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMI 749

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F V   +VT +QR   K +   L Y   +     +++  G+  
Sbjct: 750 NAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIGR 806

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                            +A+ +     + +P           A ++     R+       
Sbjct: 807 ----------------AEAQKYMDLYFQRYP-----------AVQQFMTDIREV------ 833

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               + + + +T+                                GR L   D+ +    
Sbjct: 834 ---AVEKGYVETLF-------------------------------GRRLYLPDIKSG--- 856

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVC 634
            N   R+               +Q  + DI+   M+    A        +++ VHDE+V 
Sbjct: 857 -NAILRKAAERVA-----INAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVF 910

Query: 635 ET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           E      D ++  ++   M    S    +PL AE
Sbjct: 911 EVKADKIDHYSQ-LIKTEMEKAIS--LKVPLIAE 941


>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 934

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 116/697 (16%), Positives = 205/697 (29%), Gaps = 171/697 (24%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   PV+L D          L   L 
Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQL-DRTQALA---QLAPLLT 416

Query: 63  NTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +  V  +  +  ++  V++        +  D  +  ++     AR +    A + +G   
Sbjct: 417 DPAVRKLGQHGKYDLHVMRRHGVELAGYAEDTLLESFVLNSGSARHDMDSLAKRYLGYDT 476

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                   +G + I                 P  + +      Y   D  +T  + + L 
Sbjct: 477 VKYEDVCGKGAKQI-----------------PFAQISLEDATRYAAEDADITLRLHRVLG 519

Query: 177 PLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P               E  L  +   I   G CVD A     +  +        Q+   L
Sbjct: 520 PRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATEL 579

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF E  L           +T +  L +                
Sbjct: 580 A-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP-------- 630

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                  R  L++ G ++         P    P+  R H    Q
Sbjct: 631 -----------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQ 667

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+ 
Sbjct: 668 AGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDP 727

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G
Sbjct: 728 GLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAF---GLARQLG 784

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +                   +A+++       +P   + D    T     ++  R     
Sbjct: 785 IGRG----------------EAQDYIALYFSRYP--GVRDFMETT-----RQQAR----- 816

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    + + +T+         +R  +  +                     +  G  
Sbjct: 817 --------DKGYVETV-------FGRRLYLDFINAGSQG---------------QRAGAE 846

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
           R+ +N                     Q  + DI+   M+N             ++L VHD
Sbjct: 847 RAAINAPM------------------QGTAADIIKRAMVNVDGWIADHAQRAKMILQVHD 888

Query: 631 EIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E   D  +   S +   M         +PL  +
Sbjct: 889 ELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVD 923


>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
 gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
          Length = 952

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 109/695 (15%), Positives = 209/695 (30%), Gaps = 172/695 (24%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------VMPQVLKEALENTDV 66
            ID    G     E +   L    F D   + +     P       +   L+   EN   
Sbjct: 383 SIDTETTGT----EPMEAELVGMSFSDAENQAYYVPVPPIREEALKIVNELRPLYENEKS 438

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQK 122
             V  N  ++  VL+   N +I +   +   +LA     P     +  + E  L   +  
Sbjct: 439 LKVGQNIKYDMIVLQ---NYEIQVKGPLFDTMLAHYVLQPELRHNMDYLAEIYLHYQTIH 495

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
           ++E                   R+     E       Y   D  VT ++   LE      
Sbjct: 496 IDE-------LIGPRGKNQKNMRDL--SPEE---VYRYACEDADVTLKLKNILEKELKEQ 543

Query: 178 -----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   I   G  +D       ++   +   ++++E+ +L      +
Sbjct: 544 GGEHLFHEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTIRLQEIEKEIYALAD-ETFN 602

Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +++   LF +   +     T+T    T + VL S +       ++           
Sbjct: 603 IASPKQVGEILFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHGIIGKILE--------- 653

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                 + G  +         P    PR    H   +Q +T   
Sbjct: 654 ----------------------YRGLKKLLSTYIDSLPQLINPRTGHIHTSFNQAVTATG 691

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   I  +G +   AD + IE R++A ++ ++  + AF
Sbjct: 692 RLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRNMIDAF 751

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +G D++  T A+ +    + VT D R   K     + Y         +A    ++    
Sbjct: 752 RSGYDIHAATAAKIYKTDISDVTADMRRKAKTANFGIIYGISVF---GLAERMNVSRQEA 808

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L+                    E +P+                K +  +  R++    
Sbjct: 809 KELIDG----------------YFETYPQ---------------VKEYMDRSIRIAR--- 834

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLN 581
                + +TI + K                         LP   S      G   R+ +N
Sbjct: 835 --ENGYVETIFHRK-----------------------RFLPDINSRNAVVRGYAERNAIN 869

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCE 635
                               +Q  + DI+   M +  +          ++L VHDE+   
Sbjct: 870 AP------------------IQGSAADIIKVAMAHIHRRFVSNNLKAKMILQVHDELNFS 911

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
            P ++ E    ++   M    +++  +PLKA+ G+
Sbjct: 912 VPASEKEIVQKIVIEEMEH--AYSMHVPLKADCGW 944


>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
 gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
          Length = 926

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 99/592 (16%), Positives = 177/592 (29%), Gaps = 88/592 (14%)

Query: 7   DFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   P +L D          L   L 
Sbjct: 353 DTETDSLDPLQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQALA---QLAPLLT 408

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  +  +  ++  V++      + +  +    +L        +          +   
Sbjct: 409 DPALRKLGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 455

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
           M+   +    +   K E       +     + +      Y   D  +T  + + L P   
Sbjct: 456 MDSLAKRYLGYDTVKYEDVCGKGAKQIKFAQVSLEDATRYAAEDADITLRLHQVLGPKLS 515

Query: 180 ----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  L  +   I   G CVD A     +  +        Q+   L  G 
Sbjct: 516 AEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 574

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 575 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 622

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L++ G ++         P    P+  R H    Q    
Sbjct: 623 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 663

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 664 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVS 723

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 724 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 780

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 781 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 833

Query: 521 WNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                +A       G A  II R    V     +  +  L++ L     LV+
Sbjct: 834 RAGAERAAINAPMQGTAADIIKRAMVSVDGWIAEHAQRALMI-LQVHDELVF 884


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 93/582 (15%), Positives = 181/582 (31%), Gaps = 81/582 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMP--QVLKEALENTDVTIVA 70
           D    G    A    ++  +F                D + P     K   EN  +  + 
Sbjct: 368 DTETTGTD--ANQCELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEFKPIFENPAIGKIG 425

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKEL 129
            N  F+  VLK     ++ +   +   +LA     P         A             L
Sbjct: 426 QNIKFDMLVLK---YYNVTMQGELFDTMLAHYIIDPDTRHNMDILAENYLGYSPVSITTL 482

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I    KG+    + D              +Y   D  VT ++ +  EP           +
Sbjct: 483 IG--AKGKGQGTMRD-------VEIEKIKDYAAEDADVTLQLKEVFEPKLQQVGGTKLAT 533

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y+   I   G  +D       ++ ++ + +KL++ +     G+  +    ++L
Sbjct: 534 DIENPLIYVLADIEFEGVRIDHDTLKEFSKDLETDISKLEKTVYEKA-GVKFNIASPKQL 592

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM- 298
              LF +  L                                +A ++   +  T  + + 
Sbjct: 593 GEVLFEKLNLDA------------------------------KAKKTKTGQYQTGEDVLL 622

Query: 299 ---NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
              N    +R  L F    +         P    P+  R H   +Q +       +++P+
Sbjct: 623 ALANKSDIVRDILDFRQLQKLKSTYVDALPLMVNPKTGRVHTSYNQAVAATGRLSSNNPN 682

Query: 356 PLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         VR   I   +   +V AD + IE R++A ++ +   + AF  G D++
Sbjct: 683 LQNIPIRTERGREVRKAFIPRNDDHVIVSADYSQIELRIIAEISKDANMMDAFIQGIDIH 742

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A+ +     +V    R   K +   + Y   A    +      +     A ++   
Sbjct: 743 TATAAKVYGKTLDEVDGTMRRNAKAVNFGIIYGQSAFGLSQ---NLNIPRKEAADIIDQY 799

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
            A  ++   +N+         E+     F+ T   R ++  R  +S  + +     +   
Sbjct: 800 FA--QYPGIKNYMSDTMNFARENG----FVQTLMGR-RRYLRDINSANATVRGYAERNAI 852

Query: 530 QTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVY 570
                G A    K   + +    KK K +  + +     LV+
Sbjct: 853 NAPIQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDELVF 894


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 306 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 355

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 356 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 412

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 413 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 462

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+     E  L+ ++         + + G  +D A    L+         L+
Sbjct: 463 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 522

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +  G   +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 523 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 578

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 579 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 612

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 613 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 672

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 673 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 732

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    E+++N+ +   + +P                     +  
Sbjct: 733 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 755

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 756 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 782

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 783 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 833

Query: 631 EIVCETPDT--DEFNASMLYHLM 651
           E+V E      DE +   +  +M
Sbjct: 834 ELVFEVDSNIADELS-KQIADVM 855


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 110/634 (17%), Positives = 189/634 (29%), Gaps = 154/634 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+     V  +  ++  V     N DI +      T++ +              A ++ 
Sbjct: 419 LEDESRKKVGQHLKYDAHV---FANHDIALRGIEHDTMLESYVLESHRNHGMDALAERVL 475

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
             K    + +    C     +  +D               Y   D  VT  + + L P  
Sbjct: 476 HLKTITYEAV----CGKGASQIGFD------EVPLDRATAYAAEDADVTLRLHRTLFPKV 525

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     + Q +   G  +D       +  + +   +L+ E   L  G
Sbjct: 526 AEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDADRLAKQSNELGLRLIELEAEAHKLA-G 584

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++    F +  L +   T     +T + VL    +  P    +        
Sbjct: 585 QPFNLGSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 637

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    + G ++         P    PR  R H    Q   
Sbjct: 638 ------------------------DYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATA 673

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   IA EG  +V AD + IE R++A ++ ++  +
Sbjct: 674 VTGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLM 733

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T A  FNV P +VT DQR + KV+   L Y   A     +AS  G+  
Sbjct: 734 RAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAF---GLASNLGIGR 790

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       +  K    +  +R   
Sbjct: 791 --------------------------------------------DAAKLYIDRYFARYPG 806

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             N + +  +   E+G       RR               L LP            + + 
Sbjct: 807 AANYMEETRQSAREHGYVETVFGRR---------------LWLP------------DING 839

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
            N   RQ               +Q  + D++   M+              +V+ VHDE+V
Sbjct: 840 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQGWLEAEAMRSRLVMQVHDELV 894

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P  +       L  LM S  +    +PL AE
Sbjct: 895 LEVPQDELAVVRERLPELMCSVAT--LRVPLVAE 926


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 111/643 (17%), Positives = 199/643 (30%), Gaps = 156/643 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
           LK  LE+  V  VA N  ++  V+K      I I  +  T++L+        A      +
Sbjct: 464 LKGLLEDASVLKVAQNLKYDYLVMKRH---GIVIRGFDDTMLLSYVLEAGVGAHGMDSLS 520

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +         KE+        T + +                 Y   D  VT  ++  L
Sbjct: 521 ERWLGHTPIPYKEVAGSGKSLVTFDLV----------DIDKATAYAAEDADVTLRLWLVL 570

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P  +           E+ L  +   + +RG  +D  +   L+  +  +    + E+  L
Sbjct: 571 KPRLAAVGLARVYERLERPLVPVLADMEERGITIDRQILSRLSGELAQKAAAFEDEIYEL 630

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280
             G   +    ++L   LF    L     T+T    T  +VL        P   ++ + R
Sbjct: 631 A-GERFNVGSPKQLGDILFGRMNLPGGSKTKTGQWSTSAQVLEDLAAQGEPLPRKIVDWR 689

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            ++         P    P+  R H    
Sbjct: 690 QL-------------------------------TKLKSTYTDALPGYVHPQTKRVHTSYS 718

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              T      +S+P+   I         +R+  I++ G KL+ AD + IE RVLA +A  
Sbjct: 719 MAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADI 778

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+  
Sbjct: 779 PQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINFGIIYGISAF---GLANQL 835

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +        +K     E +   +++    +    EH   +   G          R+ H 
Sbjct: 836 SIERAEAGEYIK--KYFERFPGIKDYMESTKAFVREHGYVETIFG----------RRAH- 882

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                             Y +   +N     PS R+       N
Sbjct: 883 ----------------------------------YPEIKSSN-----PSMRAF------N 897

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--------DIVLT 627
            R+ +N                    +Q  + D++   M+    A           ++L 
Sbjct: 898 ERAAINAP------------------IQGSAADVIRRAMVQVEPALAKAGLGEKTRMLLQ 939

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667
           VHDE++ E  D   E    ++   M +   P+ A  +PLK + 
Sbjct: 940 VHDELIFEVEDEAIEAALPVIVSTMENAAMPAIAMRVPLKVDA 982


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 199/634 (31%), Gaps = 146/634 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115
           LK  L N ++  +  N  ++ T+     N  I +      T++ + +            A
Sbjct: 430 LKPILLNPEIKKIGQNIKYDLTI---FANYGIELQGVAFDTMIESYTQNSTGRHNMDDLA 486

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    K    +EL  +     T + +                EY   D  VT ++ + L
Sbjct: 487 ARYLGHKTIPFEELAGKGKNQLTFDKI----------EIAKAAEYAAEDADVTMKLHQVL 536

Query: 176 EPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                +E EL  L              I   G  +D     T +  ++    +++  + +
Sbjct: 537 WEKLQQEPELVKLFDEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHA 596

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              G   +    ++L+  LF + GL +   T                Q   +    +   
Sbjct: 597 EA-GQTFNLASTKQLQEILFEKLGLPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEH 655

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R                          G S+         P     +  R H   +Q +T
Sbjct: 656 R--------------------------GLSKLKSTYTDKLPQLINKKTGRVHTSYNQAVT 689

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +SDP+   I         +R   +A EG K+V AD + IE R++A ++ ++  +
Sbjct: 690 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMI 749

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F V   +VT +QR   K +   L Y   +     +++  G+  
Sbjct: 750 NAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIGR 806

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                            +A+ +     + +P           A ++     R+       
Sbjct: 807 ----------------AEAQKYMDLYFQRYP-----------AVQQFMTDIREV------ 833

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               + + + +T+                                GR L   D+ +    
Sbjct: 834 ---AVEKGYVETLF-------------------------------GRRLYLPDIKSG--- 856

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVC 634
            N   R+               +Q  + DI+   M+    A        +++ VHDE+V 
Sbjct: 857 -NAILRKAAERVA-----INAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVF 910

Query: 635 ET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           E      D ++  ++   M    S    +PL AE
Sbjct: 911 EVKADKIDHYSQ-LIKTEMEKAIS--LKVPLIAE 941


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 104/677 (15%), Positives = 210/677 (31%), Gaps = 156/677 (23%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALE 62
           D ET    D+        A    ++  +F + +          D      +    K   E
Sbjct: 383 DTET---TDIN-------ALHADLVGMSFSYKEREAYYVAVPKDKKEIQAIVDEFKPFFE 432

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS-SQ 121
           +  +  +AHN  ++  VL       +     +   ++A     P + + +    +   + 
Sbjct: 433 HKSIEKIAHNMKYDIQVLHRY---GVQFAGPLFDTMIAHYLIQPESKQGMDFLAEYYLNY 489

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                + LI +  KG+ +                   +Y   D  +T ++ +   P   K
Sbjct: 490 TPVSIETLIGKKGKGQGNMGDLQP---------EAISDYACEDADITFQLKQLFAPQIEK 540

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   + + G  +D+      ++ +  E   L++ ++ L  G+  
Sbjct: 541 DHLKSLFYDMEMPLVSVLAEMEEEGVAIDIPHLEAYSKQLAEETEGLEKRIKELA-GMDF 599

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L   LF    + +    + T     ++++ +           ++  +      
Sbjct: 600 NVDSPKQLGDVLFEH--MKISSKAKKTKTGQYATSEDI-----------LQQHK------ 640

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                  N    +   L +    +         P    P   R H    Q +T      +
Sbjct: 641 -------NDHEIIPCILDYRQMKKLKSTYVDPLPTMKDPVDGRVHTSYMQTVTATGRLSS 693

Query: 352 SDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           ++P+   I         +R   IA S+  +L+ AD + IE R++A +A +   ++AF+  
Sbjct: 694 NNPNLQNIPIRSERGKEIRRAFIARSKDFQLMSADYSQIELRIIAALADDTNMIQAFKDK 753

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T A+ F+V    VTKDQR+  K +   + Y   A    +     G++      +
Sbjct: 754 VDIHRATAAKVFHVELDDVTKDQRSAAKAVNFGIIYGQSAFGLSQ---NLGISRTEAKQI 810

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           + +  A                                            + S +   + 
Sbjct: 811 IDSYFA--------------------------------------------QYSTIKTYMD 826

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
            A +   ENG      +RR                 LP   S             N   R
Sbjct: 827 NAVKDARENGYVETIMQRRRY---------------LPDINS------------ANAVVR 859

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PD 638
                           +Q  + DI+   M+   KA         ++L VHDE+V +   D
Sbjct: 860 GFAERNA-----VNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDELVFDVHND 914

Query: 639 TDEFNASMLYHLMTSNP 655
             E    ++   M +  
Sbjct: 915 EQEVMKKLVKEAMENAI 931


>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
 gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
          Length = 904

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 117/659 (17%), Positives = 199/659 (30%), Gaps = 161/659 (24%)

Query: 41  PVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI- 94
           PV          +P+      L+  LE+     + H++ ++  V     N  + +     
Sbjct: 363 PVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHV---FANEGVSLAGVAE 419

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            T++ A        +     A +   +     ++L  +  K                 A 
Sbjct: 420 DTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQ----------IGFDEVAV 469

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALA 204
            L G Y   D   T ++ + L P  ++          E ++  +   +   G  VD    
Sbjct: 470 ALAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQEL 529

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQ 260
              +  +  E   L+Q    L  G   +    ++L   LF   GL +   T     +T +
Sbjct: 530 GRQSHKLGQEMLALEQRAYELA-GQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDE 588

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VLS   +  P    +   R                               G S+     
Sbjct: 589 EVLSKLAQDYPLPQVLLEYR-------------------------------GLSKLKSTY 617

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375
               P    P   R H    Q         +SDP+   I         VR   IA +G K
Sbjct: 618 TDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-K 676

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++ +    +AF  GED++  T +  F V  A+V  +QR   K +
Sbjct: 677 LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAI 736

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y  G      +AS  G+  +     +                    ++    A +
Sbjct: 737 NFGLIYGMGVF---GLASNLGITRDAAQAYIDRYFTRYP------GVARYMDDTRRLARD 787

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
             ++ T   R                                                  
Sbjct: 788 QGYVETVFGR-------------------------------------------------- 797

Query: 556 NNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
               L LP  R+    R  G  R+ +N                     Q  + D++   M
Sbjct: 798 ---RLQLPDIRAASGPRRQGAERAAINAPM------------------QGTAADLIKMAM 836

Query: 615 ------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                 ++A +    +++ VHDE+V E PD +    A  L  LM    +    +PL AE
Sbjct: 837 VAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVAT--LRVPLVAE 893


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/598 (15%), Positives = 177/598 (29%), Gaps = 86/598 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVA 70
           D    G      D  ++  +F   ++                + +  +   +N     V 
Sbjct: 374 DTETTGTDP--MDAELVGMSFSIAENQAFYIPVPAGREEATKIVREFESVFKNDKSLKVG 431

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127
            N  ++  VL+   N  I I   +   ++A     P     +  + E       +    +
Sbjct: 432 QNIKYDMLVLQ---NYGIEIRGRLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 486

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181
           ELI              +N  +          Y   D  VT ++   LE    K      
Sbjct: 487 ELIG-------PRGKGQKNMRDLSPKD--VYLYACEDADVTLKLKNILEQELKKNDAEKL 537

Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   I   G  +D       ++        +++E+ +L  G   +    +
Sbjct: 538 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLA-GEEFNIASPK 596

Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++   LF +   +     T+T    T + VL S +       ++   R            
Sbjct: 597 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYR------------ 644

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                              G  +         P    PR  R H   +Q +T      +S
Sbjct: 645 -------------------GLKKLLSTYIDALPQLINPRTGRIHTSFNQTVTATGRLSSS 685

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I         +R   I  +G     AD + IE R++A ++ ++  + AF +G D
Sbjct: 686 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSGYD 745

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A+ + V   +VT D R   K     + Y         +A    ++      L+ 
Sbjct: 746 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 802

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                E +   + +     +   EH   +          K+     +SR + +     + 
Sbjct: 803 --GYFETYPQVKAYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 855

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584
                  G A    K     +    K +     ++L     L +      +  +    
Sbjct: 856 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQVV 913


>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 915

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 110/681 (16%), Positives = 204/681 (29%), Gaps = 152/681 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEAL----ENTDVT 67
           D    G+   + D+  +  A    +    PV              LK  L     +  + 
Sbjct: 347 DTETTGLDALSADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTDELKRYLGPVLADVGIG 406

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
            +AHN+ ++  +L       + +       +LA      S+L   G A      +M    
Sbjct: 407 KIAHNAKYDLHILA---GAGLLVAGLDFDTMLAAHLLGESSLSLKGLAFNRLGIEMTPIT 463

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----- 182
            LI     G   +C+            R   +Y   D  +T  +++ L P   KE     
Sbjct: 464 ALIGE---GRHQKCISTCGL-------RETADYACADADMTLRLYQLLLPELEKENQSRL 513

Query: 183 -----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                  L  +   +   G  VDV +   ++  +  + T+++  +         +     
Sbjct: 514 FDEVEMPLVPVIMDMEAAGIAVDVTILSAMSARLGRQLTEIEAAIYEQA-NRPFNIASPR 572

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF E  L +   T +  +   +  + L                            
Sbjct: 573 QLGEVLFEELKLPVGRKTRSGYRTDAAVLEGL---------------------------- 604

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
            +    +R  L++   ++       + P     R  R H   +Q  T      +SDP+  
Sbjct: 605 KDEHEIVRLILEYRTLAKLKSTYVDILPAMVSARDGRLHTSFNQARTATGRLSSSDPNLQ 664

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I         +R   +A  G  L+ AD + I+ R LA ++G+   + AF   ED++  T
Sbjct: 665 NIPVRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSALIAAFNAEEDIHTAT 724

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
               + +   ++T + R   K +   + Y              G  L     + +     
Sbjct: 725 AMSLYGLPRDEITPEMRRFAKTVNFGVIYGMS-----------GYGLEQATEMSR----- 768

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              E++  F +   E +P                                       +  
Sbjct: 769 ---EESTRFIQTYFERYP-------------------------------------GVRAY 788

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
            N     AR R  V  +                  L  R    + +  N   R+      
Sbjct: 789 LNLTKEQARSRGYVETI------------------LGRRRYIPDINAANRQVREAAERMA 830

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASM 646
                    VQ  S DI+   M+   +          ++L VHDE++ E P  +    S 
Sbjct: 831 -----INMPVQGTSADIIKVAMLEVRREMDSQGLESRLLLQVHDELIFEVPQAELMFMSE 885

Query: 647 LY-HLMTSNPSWAKGLPLKAE 666
           L    M++       +PL+ +
Sbjct: 886 LASRRMSAAVE--LKVPLRVD 904


>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans]
          Length = 922

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 89/536 (16%), Positives = 164/536 (30%), Gaps = 86/536 (16%)

Query: 62  ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           E+     V  +  ++  VL+        +  D  +  ++     +R +    A + +G  
Sbjct: 404 EDPAKRKVGQHGKYDLHVLRRHGVQVHGYADDTMLESFVLNSTASRHDMDSLAKRYLGYD 463

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                    +G + IA                   + A      Y   D  +T  + + L
Sbjct: 464 TVKYEDVAGKGAKQIA-----------------FSQVAIDDATGYAAEDADITLRLHRAL 506

Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                 E             L  +   I   G CVD+A     +Q++        Q+  +
Sbjct: 507 SAQLDAEPALARVYREIEMPLVPVLTRIEANGVCVDIAELRKQSQVLSQRMLAAQQKAVA 566

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF E  L           +T +  L +               
Sbjct: 567 LA-GRSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEEALEAIADQHELP------- 618

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   R  L++ G ++         P    P   R H    
Sbjct: 619 ------------------------RVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYH 654

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q         +SDP+   I         +R   +A  G+KL+  D + IE R++A ++ +
Sbjct: 655 QAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSED 714

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF  G D++  T A  F     QV+ ++R   K +   L Y   A     +A   
Sbjct: 715 PGLLRAFSQGVDVHRATAAEVFGRTLEQVSANERRAAKAINFGLMYGMSAF---GLARNL 771

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        V        +    +F   M+E        +   G             ++
Sbjct: 772 GIGRGEAQDYV--ALYFSRYPAVRDFMERMREQARTQGYVETLFGRRL-----YLNDINA 824

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
           +   L     +A       G A    KR  V +  +++  +   +++L     LV+
Sbjct: 825 KQQGLRAGAERAAINAPMQGTAADIIKRAMVSVDTWLQDHRARALMILQVHDELVF 880



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 14/141 (9%)

Query: 538 IIARKRRDVPLVYMKKD---KNNLILMLPSGRSLVYRD-VGNNRSYLNTTTRQLTREYTY 593
           I   + +D   +Y  +    ++ +  M    R+  Y + +   R YLN    +       
Sbjct: 773 IGRGEAQDYVALYFSRYPAVRDFMERMREQARTQGYVETLFGRRLYLNDINAKQQGLRAG 832

Query: 594 GGKLTEN-IVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP-DTDEFNAS 645
             +   N  +Q  + DI+   M++        +A   ++L VHDE+V E   D  E    
Sbjct: 833 AERAAINAPMQGTAADIIKRAMVSVDTWLQDHRARALMILQVHDELVFEVDADFVEILLP 892

Query: 646 MLYHLMTSNPSWAKGLPLKAE 666
            +   M +       +PL  +
Sbjct: 893 EVTWRMAAAAE--LKVPLVVD 911


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/577 (15%), Positives = 183/577 (31%), Gaps = 71/577 (12%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVA 70
           D    G    A    ++  +F                     +    K  LEN ++  + 
Sbjct: 369 DTETTGTD--ANLAELVGLSFSVKPGAGYYIPLPPERTLAQPILDEFKVVLENENIAKIG 426

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            N  ++  +LK      + I   +   +LA     P     +     LS   +      I
Sbjct: 427 QNIKYDMLILKWY---GLEIKGKLFDTMLAHYLIDPDTRHNMD---VLSENYLCYSPISI 480

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SS 180
            +    +       R+ P          +Y   D  VT ++     P+          + 
Sbjct: 481 TKLIGPKGKNQGNMRDVPV-----AQVVDYAAEDADVTLQLANVFRPMLKDLNAEQLATE 535

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L Y+   I   G  +D+      ++ ++ +  K ++ +     G+  +    ++L 
Sbjct: 536 VENPLIYVLADIESEGVRIDIETLVNYSKELETDIRKFEKNVYDKC-GVEFNLASPKQLG 594

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             LF                       +L P+A +    + +     +L L +  + +  
Sbjct: 595 EVLFDRL--------------------QLDPKAKKTKTGQYQTGEDVLLALASKSDIVQD 634

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                  L F    +         P    P+  R H   +Q +       +++P+   I 
Sbjct: 635 ------ILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSYNQAVAATGRLSSNNPNLQNIP 688

Query: 361 -----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   VR   I   E   L+ AD + IE R++A ++ E+  L+AF  G D++  T A
Sbjct: 689 IRTERGREVRRAFIPRDENHVLLSADYSQIELRIIADISKEENMLQAFNQGLDIHTATAA 748

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + + VA  +VT  QR   K +   + Y   A    +   + G+     A ++       +
Sbjct: 749 KVYGVAIEEVTSTQRRNAKAVNFGIIYGQSAFGLSQ---SLGIPRKEAAEIID--QYFTQ 803

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           +   + +         E+     F+ T   R ++  R  +S    +     +        
Sbjct: 804 YPGIKKYMSDTMNFARENG----FVETILGR-RRYLRDINSANQTVRGFAERNAINAPIQ 858

Query: 535 GKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
           G A    K   + +      +     + +     LV+
Sbjct: 859 GSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELVF 895


>gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645]
 gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645]
          Length = 880

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 115/692 (16%), Positives = 212/692 (30%), Gaps = 149/692 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------DCVHDPVMP 54
             L  D ET S          ++A+   ++  +F +D              D   D  + 
Sbjct: 297 KRLSFDTETTSTNP-------RWAD---LVGISFSWDQGEGVYIPIRSPEGDVKLDESLV 346

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
            + L+  LEN+ +  V  N  ++  VL+    + + +       ++A         +   
Sbjct: 347 LEKLRPILENSAIEKVGQNLKYDLVVLR---GVGVNVRGASFDTMVAHYLLEAGARSHGL 403

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              +L+    +  +  ELI     G     +     P         G Y   D  +   +
Sbjct: 404 DELSLRYLQHETVKISELI-----GTGKNQIRMDQVPV-----DKVGYYAAEDADIPLRL 453

Query: 172 FKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              L            L+  E  L  +   +   G  VDV   + L++        L++E
Sbjct: 454 DPILSERIEAEGLGDLLTDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLERE 513

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  L  G   +    ++L T LF E  L +   T+T         ++L  Q         
Sbjct: 514 IYQLA-GRDFNINSPKQLGTVLFDELNLPVIKKTKTGPSTDAEVLEQLAKQHDMPAK--- 569

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                     +QF   ++         P     +  R H   +Q
Sbjct: 570 -------------------------IVQFRQYAKLKGTYVDALPVLICSKTDRVHTSFNQ 604

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
           ++       ++DP+   I      S  +RS  I      KL+ AD + IE RVLA  +G+
Sbjct: 605 VVAATGRLSSNDPNLQNIPIRTQESREIRSAFIPGTPDWKLLCADYSQIELRVLAHFSGD 664

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +++++  ED++    +  + V   QVT   R   K +   + Y         +A + 
Sbjct: 665 PALMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVYGQSPF---GLAKSL 721

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            ++ +     +                  + E        D ++ T   R          
Sbjct: 722 DIDKDEAYGFIDAYFKRYP------GVDVLMEQILVDCQRDGYVRTILGR---------- 765

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                         + I+  +    R R                      R L       
Sbjct: 766 -------------RRAIDGVRTADKRDRLK--------------------RQLTMP---- 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R+ +NT  +         G   + I  A+ R       +    +   ++L +HDE+V E
Sbjct: 789 ERTAINTVIQ---------GSAADIIKLAMLR---VHRRLEKEGSPAKLLLQIHDELVFE 836

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           TP       + L    M S  + A  +PL  +
Sbjct: 837 TPPEYLEQLAQLVREEMESARNLA--IPLVVD 866


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD          H+    PQ L    
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---SANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+     E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +  G   +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    E+++N+ +   + +P                     +  
Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT--DEFNASMLYHLM 651
           E+V E      DE +   +  +M
Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 108/635 (17%), Positives = 191/635 (30%), Gaps = 156/635 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119
           LE+     +  +  ++  V     N  + +      T++ +              A +L 
Sbjct: 416 LEDPARPKLGQHLKYDSHV---FANHGVALRGIAHDTMLESYVLASYRNHGMDSLAERLL 472

Query: 120 SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           S K    +E+    C    ++  +D+ + P          EY   D  VT  + ++++P 
Sbjct: 473 SLKTITYEEV----CGKGANQIGFDQIDLP-------RATEYAAEDADVTLRLHRKMQPQ 521

Query: 179 SSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  +  + Q I   G  +D       +  + +    L++       
Sbjct: 522 LEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQSAELGLRMMDLERAAHD-AA 580

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           G   +    +++   LF +  L +   T     +T + VL       P    +       
Sbjct: 581 GQPFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLADDYPLPKLLL------ 634

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                     + G S+         P    P   R H    Q  
Sbjct: 635 -------------------------DYRGLSKLKSTYTDKLPKMVNPNTGRVHTSYGQAT 669

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                  ++DP+   I         +R   IA+ G  +V AD + IE R++A ++G++  
Sbjct: 670 AVTGRLASTDPNLQNIPVRTEEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENL 729

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T    F V    V+ +QR   KV+   L Y   A     +AS  G+ 
Sbjct: 730 LRAFANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAF---GLASNLGIE 786

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                                           K    +   R  
Sbjct: 787 REAA--------------------------------------------KHYIDRYFMRYP 802

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            + + + Q  +   E G       RR               L LP            + +
Sbjct: 803 GVAHYMEQTRQTAREQGYVETVFGRR---------------LWLP------------DIN 835

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
             N   RQ               +Q  + D++   M+         + G   ++ VHDE+
Sbjct: 836 GGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVQDWLEGERLGTRQIMQVHDEL 890

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E P  + E     L  LM +  +    +PL AE
Sbjct: 891 VLEVPQAELELVRVKLPELMCAVAT--LNVPLVAE 923


>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 930

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/549 (16%), Positives = 183/549 (33%), Gaps = 74/549 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LEN ++  V  N  ++ ++      +++    +  T++L+              A 
Sbjct: 409 LKPVLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSY-DTMLLSYVLDSTGRHNMDELAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    +    +++  +     T   +                EY   D  +T ++ + L 
Sbjct: 467 RYLGHQTIHFEDIAGKGKAQLTFNQI----------PLEQAAEYAAEDADITMKLQQVLW 516

Query: 177 PLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
              + + EL  L Q            I   G  +D     + +Q + V  T L+Q+   L
Sbjct: 517 EKVAAQPELVKLYQTMELPLASVLSRIERHGVLIDSDALFSQSQQIGVRLTALEQQAYEL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF +  L +   T      T + VL            +  +R 
Sbjct: 577 A-GQQFNLASTKQLQEILFDKLSLPVLKKTPKGAPSTNEEVLEELAYEHALPKILVEHR- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P        R H    Q
Sbjct: 635 ------------------------------GLSKLKSTYTDKLPLMVNKDTGRVHTSYHQ 664

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA EG +++ AD + IE R++A ++ ++
Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAHLSQDK 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G+D++ +T A  F +  AQV+ +QR   K +   L Y   +     ++   G
Sbjct: 725 GLINAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIYGMSSF---GLSRQLG 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +      + +   + F   ++E          ++ T  +R +       S 
Sbjct: 782 IPRHEAQKYMD--LYFQRYPGVQAFMHDIRETAKAQG----YVTTLFDR-RLYLPDIQSS 834

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +       +        G A    KR  + L      + ++ +++     LV+    + 
Sbjct: 835 NAIRRKAAERVAINAPMQGTAADIIKRAMITLDREIAGQPDIKMIMQVHDELVFEVRTDK 894

Query: 577 RSYLNTTTR 585
             +  T  +
Sbjct: 895 IEHFRTIIK 903


>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
 gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
          Length = 928

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 105/637 (16%), Positives = 189/637 (29%), Gaps = 152/637 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+        N  ++  VL    N  I +       +LA           + +  
Sbjct: 406 LKPWLEDASKKKCGQNLKYDCHVLA---NHGIALAGIADDSMLASYVLESHQRHNMDD-- 460

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--- 173
            L+ + + E        C     +               +   Y   D  +T  + +   
Sbjct: 461 -LARRHLGENTVSYEEICGKGAKQIG------FSEVDVDIAANYAAEDADITLRLNQFFA 513

Query: 174 -----RLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                 LE +    E  +  +   +   G  +D       +  +  +  +L+Q    L  
Sbjct: 514 GQLFGDLEKVYRDIELPVAEVLFKMERHGVLIDRDKLAAQSHQLGSQMLELEQRAYELA- 572

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRM 281
           G   +    ++L+  LF +  +  + + +T      T + VL       P    +   R 
Sbjct: 573 GQPFNLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTDESVLEQLALDHPLPKCILEYR- 631

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G ++         P    P+  R H    Q
Sbjct: 632 ------------------------------GLAKLKSTYTDKLPTLIYPQTGRVHTTYAQ 661

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         VR   IA  G ++V AD + IE R++A ++ ++
Sbjct: 662 AVAITGRLASNDPNLQNIPVRTAEGRRVREAFIAPAGWQIVSADYSQIELRIMAHLSDDE 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF +GED++  T A  F V  A VT DQR   K +   L Y   A     +A+   
Sbjct: 722 GMLKAFASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLIYGMSAF---GLAAQLD 778

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +            + +           +   E A                       
Sbjct: 779 IERSAAQQ------YIDRYFMRYPGVAEYMQATREKAR---------------------- 810

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    Q + +T+         +R  +P + +           P  R+      G  
Sbjct: 811 --------EQGYVETV-------FGRRLYLPDIKLSN---------PGRRA------GAE 840

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
           R+ +N                     Q  + D++   M+              +++ VHD
Sbjct: 841 RAAINAPM------------------QGTAADLIKLAMIAVQDWLERDGLQSKLIMQVHD 882

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666
           E+V E P  +       L  +M         +PL AE
Sbjct: 883 ELVLEVPQAELEQVKRRLPEIMAGAAE--LKVPLLAE 917


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 109/637 (17%), Positives = 198/637 (31%), Gaps = 142/637 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + LK+ LE+  V  VA N  ++  ++K      + +  +  T++++        L+A   
Sbjct: 470 ERLKDLLEDEAVLKVAQNLKYDYLLMKRH---GVVMRSFDDTMLISYV------LEAGKT 520

Query: 115 ALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              + +      G   IA     +        +             Y   D  VT  ++ 
Sbjct: 521 THGMDTLSERWLGHTPIAY----KDVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWM 576

Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P    E+           L  +   + +RG  VD  +   L+  +  +    ++E+ 
Sbjct: 577 ALKPRLVSERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEIY 636

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    ++L   LF   GL     T+T    T  +VL        +       
Sbjct: 637 ELA-GERFNIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQVLEDLAAEGAELP----- 690

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                    R  + +   ++         P    P   R H   
Sbjct: 691 -------------------------RKIVDWRQLTKLKSTYTDALPSYIHPETKRVHTSY 725

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
               T      +S+P+   I         +R+  I++ G KL+ AD + IE RVLA +A 
Sbjct: 726 ALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVAD 785

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                 AFE G D++  T +  F V    +  + R   K +   + Y   A     +A+ 
Sbjct: 786 IPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQ 842

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +  +     +K      ++ +     R   E     A                     
Sbjct: 843 LSIARSEAGDYIK------KYFERFPGIRDYMEATKAFAR-------------------- 876

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDV 573
                        + +TI   +A                         P  RS       
Sbjct: 877 ----------ENGYVETIFGRRAHY-----------------------PEIRSSNPSVKA 903

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            N R+ +N   +         G   + I +A+ R    E  + A K    ++L VHDE++
Sbjct: 904 FNERAAINAPIQ---------GSAADIIRRAMIR---IEPALEAEKLSARMLLQVHDELI 951

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            E  + + E    ++  +M      A  +  PLK + 
Sbjct: 952 FEVEEAEIEKTLPVVVSVMEDAAMPAISMRVPLKVDA 988


>gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029]
 gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138]
 gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029]
 gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138]
          Length = 870

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 111/605 (18%), Positives = 193/605 (31%), Gaps = 142/605 (23%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +  +LK+     D+T   +N    R    A  N  I I      L LA        
Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLK--RDC-HALLNAGIVIREISYDLALAEH------ 398

Query: 109 LKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L   G  +   S  +  G  E   RF K   +  L     P   E +  FGE+      +
Sbjct: 399 LTNGGGKISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQY--FGEFVAYLPII 456

Query: 168 TREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              I + +        LS  E  L  +  ++   G  +DV     L  + + E   L +E
Sbjct: 457 KDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEE 516

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  L+ G   + +  ++L   L+ E GL   D  ++T   VL + +   P   ++     
Sbjct: 517 IYDLS-GRPFNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLA--- 572

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                       F    +         P Q      R H   DQ
Sbjct: 573 ----------------------------FRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQ 604

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
                      DP+   I         +R     SE     + AD + IE R LA ++ +
Sbjct: 605 TGAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQD 664

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    AFE+GED++  T ++ F+V   QV+K+QR   K +   + Y   A     +A   
Sbjct: 665 KSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAF---GLAKVL 721

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +++     L++       + +  +F         + A +DL + T   R          
Sbjct: 722 KISIGEAQELIQA--YFSRYPEIAHFVEETI----QQAAKDLRVTTMLGR---------E 766

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R+ + WNE                                       P  R+        
Sbjct: 767 RIIDSWNEF--------------------------------------PGSRAAS------ 782

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
            R  +NT  +                    + +++   M++ ++A         ++L +H
Sbjct: 783 GRFAVNTRIQ------------------GSAAELIKLAMLDISQAIKQQQMKSRMLLQIH 824

Query: 630 DEIVC 634
           DE++ 
Sbjct: 825 DELLF 829


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 116/697 (16%), Positives = 215/697 (30%), Gaps = 167/697 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
              ID ET + +D       + AE   ++ F+  FD          H+            
Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
           +   +K  LEN  V  + H+  ++  +     N  I +  W    +LA      +A    
Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506

Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++    +L+     E  L+ ++         + + G  +D A    L+         L+
Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   +      +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      +SDP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y        +    
Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T                    ++++N+ +   + +P                     +  
Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R  ++ +   Q F +TI                                GR L   D+ 
Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   R+          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQAKLLLQVHD 877

Query: 631 EIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E      E  +  +  +M S       +PL  E
Sbjct: 878 ELVFEADQNIAEELSKQIASVMESVVE--ISVPLVVE 912


>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
 gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
          Length = 934

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 103/654 (15%), Positives = 188/654 (28%), Gaps = 157/654 (24%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D   +  +P       LK  LE+  V  +  N  ++  +        I I     T++++
Sbjct: 396 DAKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY---GIEIAPIDDTMLMS 452

Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +G          + +  +      K+L+         +  +DR              
Sbjct: 453 YALHGGEHQHGMDTLSERYLAHTPIPIKDLLGTG----KSQITFDR------VPLDKATG 502

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +    +P   +          E+ L  + + +  RG  VD A    ++ 
Sbjct: 503 YAAEDADITLRLALTFKPQLHRAHVTRVYETLERPLVPVLKAMEMRGIKVDRATLSRMSG 562

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265
               +  +L++E+ +L  G   +     +L   LF +  L      +    +T   VL  
Sbjct: 563 KFAQKMAELEEEIHALA-GEKFNVGSPAQLGDILFEKMSLPGGKRGKNGKYSTPADVLED 621

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R                                 S+          
Sbjct: 622 LATEHDLPGRVLDWRQL-------------------------------SKLKSTYTDALQ 650

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
               P   R H        +     ++DP+   I         +R   +A EG  LV  D
Sbjct: 651 EHINPDTGRVHTSYSIAGANTGRLASNDPNLQNIPVRSEEGRRIREAFVAPEGHTLVSLD 710

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA MA      +AF  G D++  T +  FNV   ++T D R   K +   + 
Sbjct: 711 YSQIELRILAHMADIDALKQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAINFGVI 770

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y        +                          +A+ F     E  P   I+     
Sbjct: 771 YGISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP--GIKQYMDD 809

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           T        +  +H RV  ++  +                                   +
Sbjct: 810 TV------KFANEHKRVETMFGRV-----------------------------------I 828

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616
             P   +   R     R+ +N                    +Q  + DI+   M+     
Sbjct: 829 HTPEIGAKGPRAGFAKRAAINAP------------------IQGTAADIIRRAMVRMPDA 870

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN---PSWAKGLPLKAEG 667
             K    ++L VHDE++ E  D    +   +   +  N   P     +PL  + 
Sbjct: 871 IAKLPAKMLLQVHDELIFEVEDGAAGDLIDVAREVMQNACDPVVKLDVPLVVDA 924


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 105/598 (17%), Positives = 197/598 (32%), Gaps = 84/598 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVA 70
           D    G+        ++  AF +D           +      + + L+   EN D+  V 
Sbjct: 389 DTETTGLNP--LTAELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRPFFENEDIQKVG 446

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VL      DI +   +   +LA     P         A    +      + L
Sbjct: 447 QNLKYDIKVLHKY---DIEVRGPLFDTMLAHYLINPDMRHNMDVLAETYLNYSPVSIETL 503

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I +  K +       R+ P   +      EY   D  +T ++ +  E             
Sbjct: 504 IGKKGKNQKS----MRDVPLEDQ-----TEYAVEDADITLQLKEHFEKELGDANTQKLFD 554

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +D A  + L + ++ +   L+  +     G   +    ++L
Sbjct: 555 DIEIPLLRVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEA-GEEFNIGSPKQL 613

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T T    T + VLS                              
Sbjct: 614 GEILFDKLKLVEKPKKTRTGQYSTAEDVLSYLAADHTI---------------------- 651

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                    ++  L + G ++         P Q      R H +  Q +       +++P
Sbjct: 652 ---------IQNVLDYRGLAKLKSTYVDALPEQVE-EDGRVHTDYMQTVAATGRLSSNNP 701

Query: 355 DPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   +   E   L+ AD + IE R++A ++ E   ++AF+ GED+
Sbjct: 702 NLQNIPIRTERGRQVRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEAFKNGEDI 761

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T A+ FNV   +VT++QR+  K +   + Y   A     +++ T L  +    L+ T
Sbjct: 762 HASTAAKVFNVPINEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLTRSESKDLIDT 818

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                         R    N  + A ED ++ T   R ++  +  +S    +     +  
Sbjct: 819 YY------KTYPKLRNYMSNLVDDAREDGYVSTVLGR-RRYLKDINSSNGVVRGAAERNA 871

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTTR 585
                 G A    K   + +     + N    ++L     LV+    N    + T  +
Sbjct: 872 VNAPIQGSAADIIKVAMINIHKKLAEGNFKTKMLLQVHDELVFDVPKNELEDIKTLVK 929


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 122/683 (17%), Positives = 214/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
              ID ET + +D       + AE   ++ F+  FD H        HD            
Sbjct: 348 HFAIDTET-TNLD------YRIAE---LVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREH 397

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
           + + +K  LEN  V  + H+  ++  +     N  I I  W    +LA      +A    
Sbjct: 398 VLEQIKPILENEQVKKIGHHLKYDAHI---FANHGITIQGWYFDTMLASYVLNAAATRHG 454

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K ++   +             +   Y   D  VT  
Sbjct: 455 MDDVARVYLSHLTTTFEQIAGKGAKQKSFNQI----------ELEVAAHYAAEDAHVTYR 504

Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++ L             L + E  +  +   + + G  +D A    L+         L+
Sbjct: 505 LYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQTLE 564

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   L  G   +    +++   LF   GL      + T     S+++ +  +       
Sbjct: 565 NQATELA-GEAFNIASPKQVGEVLFDRLGL---KGGKKTATGQYSTSESILEKIEHPLAE 620

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 621 --------------------------VILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSY 654

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 655 HQALTATGRLSSTDPNLQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQ 714

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +    VT DQR   K +   L Y  G   F  +   
Sbjct: 715 DDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY--GMSEF-GLTRQ 771

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G                   E++ ++     + +P        +    ER ++  R   
Sbjct: 772 LGFTR----------------EESRSYIARYFQRYP-------GVLDYMERTRQIAR--- 805

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      Q F +TI                                GR L   D+ 
Sbjct: 806 ----------EQGFVETIL-------------------------------GRRLYTPDIL 824

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
            N    N   +Q          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 825 AN----NKMIKQAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQAKLLLQVHD 875

Query: 631 EIVCETPDT--DEFNASMLYHLM 651
           E+V E  +T  DE +   +  +M
Sbjct: 876 ELVFEADETIADELS-KQIAEVM 897


>gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222]
 gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222]
          Length = 940

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 102/636 (16%), Positives = 180/636 (28%), Gaps = 147/636 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  +  N  ++  VL       +P+   +              L +  +  
Sbjct: 417 LKPVLEDPSVLKIGQNIKYDWKVLARHGIRMVPLDDTM--------------LLSYAQNA 462

Query: 117 KLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKR 174
              +  M+E  +L     C          +++ N  + A     EY   D  VT  +++ 
Sbjct: 463 GAHNHGMDELADLYLGHRCLPIKDLIGSGKSQINFSQVAIDKASEYAAEDAEVTWRLWRH 522

Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L P              E+ +  +   +   G  +D      ++     +   L+ E+  
Sbjct: 523 LRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKRMSNAFAQKMAGLEAEIHE 582

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF   GL      +T    T   VL            +V + 
Sbjct: 583 LAGG-PFNVGSPKQLGEILFERMGLAGGKQGKTGAFSTGAEVLEDLAAEGHELPARVLDW 641

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+         P    P   R H   
Sbjct: 642 R-------------------------------AISKLKSTYTDALPLHVNPETGRVHTSY 670

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                      ++DP+   I         +R   +A+ G +LV  D + IE R+LA +A 
Sbjct: 671 SIAGAQTGRLASTDPNLQNIPVRTDEGRRIREAFVAAPGMRLVSLDYSQIELRILAHVAQ 730

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  G D++  T ++ F V    +    R   K +   + Y         +A  
Sbjct: 731 IPALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAKAINFGVIYGISGF---GLARN 787

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        + T    E + +     R   +     A +D F+ T   R         
Sbjct: 788 LRIPRAEAQAFIDT--YFERFPE----IRAYMDRTVAGAKQDGFVRTLFGR--------- 832

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                                        +M P          G
Sbjct: 833 --------------------------------------------RIMTPGINQSGPAAGG 848

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             R+ +N   +         G   + I +A+ R   A   + A      ++L VHDE+V 
Sbjct: 849 ARRAAINAPIQ---------GAAADIIRRAMIRMPQAIAHLPA-----RMLLQVHDELVF 894

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667
           E  +        +   +M      A    +PL  + 
Sbjct: 895 EVEEAAVPELVEVARGVMQGAADPAVRLDVPLIVDA 930


>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
 gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
          Length = 904

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 117/659 (17%), Positives = 199/659 (30%), Gaps = 161/659 (24%)

Query: 41  PVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI- 94
           PV          +P+      L+  LE+     + H++ ++  V     N  + +     
Sbjct: 363 PVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHV---FANEGVSLAGVAE 419

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            T++ A        +     A +   +     ++L  +  K                 A 
Sbjct: 420 DTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQ----------IGFDEVAV 469

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALA 204
            L G Y   D   T ++ + L P  ++          E ++  +   +   G  VD    
Sbjct: 470 PLAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQEL 529

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQ 260
              +  +  E   L+Q    L  G   +    ++L   LF   GL +   T     +T +
Sbjct: 530 GRQSHKLGQEMLALEQRAYELA-GQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDE 588

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VLS   +  P    +   R                               G S+     
Sbjct: 589 EVLSKLAQDYPLPQVLLEYR-------------------------------GLSKLKSTY 617

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375
               P    P   R H    Q         +SDP+   I         VR   IA +G K
Sbjct: 618 TDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-K 676

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++ +    +AF  GED++  T +  F V  A+V  +QR   K +
Sbjct: 677 LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAI 736

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y  G      +AS  G+  +     +                    ++    A +
Sbjct: 737 NFGLIYGMGVF---GLASNLGITRDAAQAYIDRYFTRYP------GVARYMDDTRRLARD 787

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
             ++ T   R                                                  
Sbjct: 788 QGYVETVFGR-------------------------------------------------- 797

Query: 556 NNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
               L LP  R+    R  G  R+ +N                     Q  + D++   M
Sbjct: 798 ---RLQLPDIRAASGPRRQGAERAAINAPM------------------QGTAADLIKMAM 836

Query: 615 ------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                 ++A +    +++ VHDE+V E PD +    A  L  LM    +    +PL AE
Sbjct: 837 VAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVAT--LRVPLVAE 893


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 117/694 (16%), Positives = 209/694 (30%), Gaps = 149/694 (21%)

Query: 8   FETRSPIDLTKCGICKYAEDVCV-ILFAFGFDDHPVELW---------DCVHDPVMPQVL 57
            ET    D+        ++   +  L    F   P   +         D    P + +V+
Sbjct: 306 IETFKQADILSVDTETTSKHPMLAKLVGISFAVEPHRAYYIPVGHTGMDAKKQPDLSRVI 365

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
              +  LEN +V  V  N  ++  VL       I +       ++A     P        
Sbjct: 366 ALIRPLLENPEVKKVGQNIKYDYIVLTRH---GIRMQGLGFDTMIASHLLNPSQRGHSLD 422

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A+ L   K    KE+            +  +   ++          C G +    +  
Sbjct: 423 KIAMDLLDHKTIRYKEVTGSGKTQIGFNEVEIQTALDYAAEDADITLLCHGILKQKLQES 482

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
             L+ ++  E  L  +   +   G  VD      L++  + E   L+ ++ +L  G   +
Sbjct: 483 NLLDLMNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTLETQIYALA-GETFN 541

Query: 233 SRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L T LF +  L  +         +T   VL+   +      ++   R       
Sbjct: 542 INSSQQLGTILFEKLQLPAKKKTKKKTGYSTDVEVLNELAEHHELPEKILRYRSL----- 596

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                      +              P   R H   +Q IT   
Sbjct: 597 --------------------------GKLKSTYSDALQELIHPETGRIHTSFNQAITATG 630

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   +   G  LV AD + IE R+LA  A ++  +++F
Sbjct: 631 RLSSSDPNLQNIPIRTNEGKMIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQSF 690

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              ED++  T A  F   P  +T+D R   K +   + Y   A    K+A    +   T 
Sbjct: 691 RNDEDIHTRTAAEVFQAFPEFITEDLRRQAKAINFGIMYGMSAF---KLAKEINVTRKTA 747

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              + +                                              +R + +  
Sbjct: 748 QTYIDS--------------------------------------------YFARYAGVKR 763

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            + +  EQ    G+      R+                     R L      N+ +  N 
Sbjct: 764 FIDKTIEQAKTTGEVTTILGRK---------------------RRL------NDINASNV 796

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET 636
             R+L              VQ  + D++   M+N  +          ++L+VHDEI+ ET
Sbjct: 797 NLRKLAERAA-----INTPVQGSAADLIKLAMINMDRELKKTPLKSRMLLSVHDEIIFET 851

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLK---AEG 667
           P  ++     L   +     +A  +PLK   A G
Sbjct: 852 PLAEKEALMDLARQVMEG-VFALKVPLKVNIAAG 884


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 110/656 (16%), Positives = 200/656 (30%), Gaps = 171/656 (26%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------ 104
             +P+ LK  LE+  V  VA N  ++  +++      I    +  T++++          
Sbjct: 466 DALPR-LKSLLEDAAVLKVAQNLKYDYLLMQRY---GIETRSFDDTMLISYVLDAGTGAH 521

Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
              P + K +G            GK                  N             Y  
Sbjct: 522 GMDPLSEKFLGHTPIPYKDVAGSGKA-----------------NVTFDLVDIDRATHYAA 564

Query: 163 GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  ++  L+P  +           E+ L  +   +  RG  VD  +   L+  + 
Sbjct: 565 EDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 624

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
               +L+ E+  L  G   +    ++L   LF + GL     T+T    T  +VL     
Sbjct: 625 QGAARLEDEIYVLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSAQVLEDLAA 683

Query: 269 L-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  ++ + R                                 ++         P  
Sbjct: 684 AGFELPRKIVDWRQL-------------------------------TKLKSTYTDALPGY 712

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
                 R H       T      +S+P+   I         +R+  I++ G KL+ AD +
Sbjct: 713 VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   + Y 
Sbjct: 773 QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG 832

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             A     +A+   +  +     +K      ++ +     R   E+    A +  ++ T 
Sbjct: 833 ISAF---GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETI 883

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                                  +R + P +             
Sbjct: 884 FG-------------------------------------RRINYPEIRSSN--------- 897

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
           PS R+       N R+ +N                    +Q  + D++   M+    A  
Sbjct: 898 PSVRAF------NERAAINAP------------------IQGSAADVIRRAMIRMEPALA 933

Query: 623 --------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
                    ++L VHDE++ E  D D E    ++  +M +    A  +  PL+ + 
Sbjct: 934 EVGLGDRVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLRVDA 989


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 93/533 (17%), Positives = 183/533 (34%), Gaps = 68/533 (12%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE 114
             K   EN ++  VA N  ++ T+L       + +   I   +LA     P         
Sbjct: 409 EFKPLFENENIRKVAQNIKYDLTILATY---GVEVKGEIYDTMLAHYILEPDQRHGMDYL 465

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A    S K     +LI +  K      L  R+ P          EY   D  +T ++   
Sbjct: 466 AETYLSYKPIPISDLIGKGKK-----QLNMRDVP-----LEQIKEYAAEDADITLQLKHV 515

Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L+           L   E  L ++   +   G  +DV   H L+  +  +  K  +++  
Sbjct: 516 LDAQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEALHDLSNTLQKDLAKTQEDIFQ 575

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           L  G+  +    ++L   LF    + +++  + T     ++ + +               
Sbjct: 576 LA-GMEFNVGSPKQLGEILFEH--MKIDEKPKKTPTGQYATGEDI--------------- 617

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
              ++      E +      R  L F   S+         P     R  R H   +Q + 
Sbjct: 618 ---LVNYEADHEIV------RKILDFRELSKLKSTYVDALPTLISKRTGRIHTTYNQAVA 668

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                 +++P+   I         +R   I   E   ++ AD + IE R++A  +G++  
Sbjct: 669 ATGRLSSTNPNLQNIPIRTERGREIRKAFIPGGEEFTILSADYSQIELRIMADFSGDESM 728

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+ G D++  T ++ F V+  +V  D R   K++   + Y   A     +A   G+ 
Sbjct: 729 LEAFDNGMDIHAATASKVFGVSLEEVNSDMRRKAKMVNFGIIYGISAF---GLAQRLGIP 785

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                +++       ++   +++     E   E    +  +G      ++  R  +SR  
Sbjct: 786 RGEAKNIIDA--YFTQFPKVKSYMDQTIEKARELEYVETILGR-----RRYLRDINSRNQ 838

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
                  +        G A    K   + +    K +N    ++L     LV+
Sbjct: 839 TNRGFAERNAINAPIQGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDELVF 891


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 111/664 (16%), Positives = 193/664 (29%), Gaps = 163/664 (24%)

Query: 28  VCVILFAFGF--DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
             V L        D  V +   V+   +   + + L +  +  V +N+     V  AC  
Sbjct: 338 PAVTLIGLAIWAGDEAVYIPHNVNGWEL---VWDLLADETIPKVTYNAK---DVCNACKA 391

Query: 86  LDIPIHRWICTLVLARSNGLPSAL-----KAVGEALKLSSQKMEEGKELIARFCKGETHE 140
               +      + LA     P+A      +   + L L+   M+          K     
Sbjct: 392 KGTELRGLCFDIQLAAYLLEPTAAKYPLTELACQHLGLAVGDMD----------KEHLGT 441

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCV 199
                  P++   W          V   + +   L  L    E  L  +   +   G  V
Sbjct: 442 -------PDYA-GWAAEVVQRLYPVLKEKLVAAGLAELYEEIELPLVPVLSEMEIAGIRV 493

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D+     L Q +      L  E+  L  G   +     +L   LF    L +   T+T  
Sbjct: 494 DLTQLDALAQEITDRIETLLTEIYQLA-GQEFNVNSTRQLGHILFEVLKLPVIKKTKTGY 552

Query: 260 ---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                VL       P    +   R+     +   L+ L + + +D               
Sbjct: 553 STDAEVLEKLAGQHPLIDCLLEYRLLTKLKSTY-LDGLRDLIRAD--------------- 596

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS 371
                            R H   +Q +T      +S+P+   I     I   +R   +  
Sbjct: 597 ---------------TGRIHTHFNQTVTATGRLSSSEPNLQNIPIRTEIGRRIRELFVPG 641

Query: 372 EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            G   ++ AD + IE RVLA M+G+   + AF   +D++  T A  F V  A+VT   RA
Sbjct: 642 PGYDWIMSADYSQIELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRA 701

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y         ++   G++       + +  A                   
Sbjct: 702 RAKAVNFGIVYGISDF---GLSRDIGVSRKEAGQYIDSYFAKYR---------------- 742

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                                        + N +        + G       RR      
Sbjct: 743 ----------------------------GVKNYIDNVINLARQQGYVTTLFGRR------ 768

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                      LP   S  +       R+ +NT                   +Q  + DI
Sbjct: 769 ---------RFLPDINSGNFNQRAFAERTAMNTP------------------IQGTAADI 801

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLP 662
           + + M+         +    ++L VHDE+V E  + +    + L    M    + A  +P
Sbjct: 802 IKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVAEAERVLVAQLVKQAMEDAVTLA--VP 859

Query: 663 LKAE 666
           L A+
Sbjct: 860 LVAD 863


>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
 gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
          Length = 917

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 120/699 (17%), Positives = 213/699 (30%), Gaps = 166/699 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID    +  D     +        ++  +F  +          H  P MP+ L       
Sbjct: 336 IDAAALTAFDTETTSLDPML--ARLVGLSFSVESGKAAYLPVAHRGPDMPEQLPLDEVLA 393

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
             K  LE+ D   V  +  ++  VL    N DI ++     TL+ +              
Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLA---NYDIALNGIEHDTLLESYVVESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K  + +++  +  K                 A     EY   D  +T ++   
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQ----------IGFDEVALTQAAEYAAEDADITLQLHHA 500

Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P  ++E  L ++ + I              G  +D       +  +     +L+ +  
Sbjct: 501 LYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEIATRLIELEAQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +         +T + VL    +  P    +  +
Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P    P   R H   
Sbjct: 620 R-------------------------------GLSKLKSTYTDKLPRMVNPSTGRVHTNY 648

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IAS G ++V AD + IE R++A ++G
Sbjct: 649 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISG 708

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS 
Sbjct: 709 DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 765

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+  +     +                                           +  ++
Sbjct: 766 LGITRDAAKLYID-----------------------------------------RYFARY 784

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V++   +     ++     + +  R+                 L LP           
Sbjct: 785 PGVAQYMEDTRSVAKEK-GYVETVFGRR-----------------LWLP----------- 815

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
              +  N   RQ               +Q  + D++   M+         K    +++ V
Sbjct: 816 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDKLASRMIMQV 869

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E PD +       L  +M         +PL AE
Sbjct: 870 HDELVLEVPDGELSLVREKLPEMMCGVAK--LKVPLVAE 906


>gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
 gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
          Length = 936

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 108/637 (16%), Positives = 192/637 (30%), Gaps = 153/637 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115
           LK  LE+     +  +  ++R V     N  I +  +   T++ +    +         A
Sbjct: 415 LKPWLEDGRRHKLGQHIKYDRHV---FANHGIEVQGYVHDTMLQSYVLEVHKPHNLGSLA 471

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            + + +K    ++L  +               P  +        Y   D  +T  + + L
Sbjct: 472 ERHTGRKGISYEDLCGKGAHQ----------LPFAQVPVDKAAAYSCEDADLTLNVHQTL 521

Query: 176 EPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P       L   + L+         I   G  +D       +  +     +L  +  +L
Sbjct: 522 WPQLQAHDRLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRIEQLQADAYAL 581

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L    F + G+ +   T T    T + VL    +  P   ++  +R 
Sbjct: 582 A-GQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAENYPLPAKLLEHR- 639

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G  +             LPR  R H    Q
Sbjct: 640 ------------------------------GLIKLKGTYTDKLTQLALPRTGRVHTHYAQ 669

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         VR   +A  G  +  AD + IE R++A ++ +Q
Sbjct: 670 AVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGCVIASADYSQIELRIMAHLSDDQ 729

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G D++  T A  F VA  QV+ +QR   KV+   L Y  G+     +A   G
Sbjct: 730 ALLHAFHAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMGSF---GLAKNLG 786

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L     A  +                +   +     A  + ++ T   R     R     
Sbjct: 787 LENKAAAAYIDRYFQRYP------GVKQYMDQTRAAAKSNGYVETVFGR-----RLYLPE 835

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++                                            P+G     R  G  
Sbjct: 836 INS-------------------------------------------PNG----PRRSGAE 848

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
           RS +N                     Q  + D++   M+   K          +++ VHD
Sbjct: 849 RSAINAPM------------------QGTAADLIKMAMVAVQKELDAQQPAIRMIMQVHD 890

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E P    ++  + +  LM    +    +PL AE
Sbjct: 891 ELVFELPGNAVDWLRTHVPRLMAEVAT--LKVPLLAE 925


>gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510]
 gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510]
          Length = 972

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 112/641 (17%), Positives = 195/641 (30%), Gaps = 156/641 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           +LK+ LE+  V  + HN  F+       F  +      +   +L        +       
Sbjct: 449 ILKDVLEDPSVLKIGHNFKFD----HQLFGRNGITVSPVDDSMLISYVLEGGSHG----- 499

Query: 116 LKLSSQKMEEGKEL-IARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFK 173
                  M+E  EL +A         C   +N+    R        Y   D  +T  ++ 
Sbjct: 500 -----HGMDELAELHLAYTPIPFKEVCGTGKNQITFDRVPLDKALAYAAEDADITLRLWT 554

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P              ++ L  +   +   G  +D      L+Q + V   ++++E+ 
Sbjct: 555 LLKPRLVDSRMVTVYETLDRPLVPVVANMEREGVRIDQQALARLSQDLSVRLAEIEKEVH 614

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278
           +L  G   +    ++L   LF    L      +T    T   VL    +     A +V +
Sbjct: 615 ALA-GQSFNIGSPKQLGEILFDTLKLGTGKKGKTGAYSTDSSVLEELAEQGHTIAQRVLD 673

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A                               +           +  P   R H  
Sbjct: 674 WRQLA-------------------------------KLKSTYTDALQEKISPVTGRVHTA 702

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                T+     ++DP+   I         +R   +AS G KL+  D + IE R++A MA
Sbjct: 703 FALAATNTGRLSSTDPNLQNIPVRTEEGRKIRRAFVASPGHKLLSVDYSQIELRLVAEMA 762

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
             Q    AF  G D++  T A+ F +  AQ+T D R   K +   + Y         +  
Sbjct: 763 DIQALKDAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYGISGF---GLGR 819

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+                                        FI T  ER  +     
Sbjct: 820 QLGIAPGEANA---------------------------------FIKTYLERFHEL---- 842

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                ++W E  +AF +       +  R+     +                      R  
Sbjct: 843 -----KVWMEATKAFARQHGYVATLFGRRCYMPGIQ----------------DKNAARRA 881

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLT 627
              R  +N                    +Q  + DI+   M      + A  +   ++L 
Sbjct: 882 FAERQAINAP------------------IQGTAADIMKRAMNRMPDALAAAGSNARMLLQ 923

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           VHDE++ E P+ +  +A+ +   +M        G+PL AE 
Sbjct: 924 VHDELLFEVPEAEVDDAARIVREVMEGAAH--LGVPLVAEA 962


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/568 (17%), Positives = 170/568 (29%), Gaps = 85/568 (14%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   PV+L D          L   L 
Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGVPVQL-DRTQALA---QLAPLLT 416

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  +  +  ++  V++      + +  +    +L        +          +   
Sbjct: 417 DPAVRKLGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 463

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           M+   +    +   K E       +  P  + +      Y   D  +T  + + L P  +
Sbjct: 464 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLA 523

Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E             L  +   I   G CVD A        +        Q+   L  G 
Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQRADLSKRMLAAQQKATELA-GR 582

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 583 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 630

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L++ G ++         P    P+  R H    Q    
Sbjct: 631 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 671

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 672 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 731

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 732 AFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAF---GLARQLGIGRG 788

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 789 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 841

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL 548
                +A       G A    KR  V +
Sbjct: 842 RAGAERAAINAPMQGTAADIIKRAMVKV 869


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 104/690 (15%), Positives = 207/690 (30%), Gaps = 162/690 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENT 64
           E+    D     +   A +  ++  A  F            D +  Q + +    A E +
Sbjct: 374 ESFC-FDTETTSLN--ALEAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQPAFEKS 430

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKM 123
            +T V  N  ++  VLK     +  I   +   +LA     P         A    +   
Sbjct: 431 SITKVGQNLKYDLLVLKKY---NFAIAGPLFDTMLAHYLLEPEMRHGMDTLAEVYLNYTP 487

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----- 178
              ++LI +  KG     + D              EY   D  +T +++K   PL     
Sbjct: 488 VSIEQLIGK--KGAKQGTMRD-------VEIEAIKEYAAEDADITFQLYKFFSPLVKDQN 538

Query: 179 -----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                +  E  L  +   +   G  +D       + ++  E T +++E+     G+  + 
Sbjct: 539 LNPLFNEVEMPLSEVLADMELEGVKIDTQALSEFSSLLQTEITAVEKEIYEHA-GVQFNI 597

Query: 234 RCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              ++L   LF +  L      T+T    T + VL+      P    +            
Sbjct: 598 SSPKQLGEILFDKLKLDPNAKKTKTGQYATGEDVLTKLDSDHPILANIL----------- 646

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                +    +         P   L +  R H   +Q +     
Sbjct: 647 --------------------DYREFQKLKSTYVDALPLL-LGKDGRVHTSFNQAVAATGR 685

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             +++P+   I         +R   +A +    ++ AD + IE R++A  + ++  L AF
Sbjct: 686 LSSTNPNLQNIPIRTDRGKEIRRAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAF 745

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++ TT ++ F V    VT D R   K++   + Y   A    +      +     
Sbjct: 746 RKGVDIHSTTASKVFKVPIEDVTADMRRKAKMVNFGIIYGISAFGLSQ---RLSIPRKEA 802

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A ++                                                  V    +
Sbjct: 803 AEIITAYFTE-----------------------------------------FPAVKAYMD 821

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
               +  + +E  + I+ R+R                L   + R++  R     R+ +N 
Sbjct: 822 ACVNSARE-VEYVETILGRRR---------------FLRDINSRNMTMRGF-AERNAINA 864

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
                              +Q  + D++   M+              +VL VHDE++ + 
Sbjct: 865 P------------------IQGSAADMIKVAMIRIHDWMKKENLKSKMVLQVHDELLFDA 906

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
              + +   + +   M      A  +P++ 
Sbjct: 907 HKDEIDLLKTQVEIFMKEAI--ALDVPMEV 934


>gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM]
 gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM]
          Length = 933

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/653 (14%), Positives = 180/653 (27%), Gaps = 155/653 (23%)

Query: 46  DCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D + +  +P+      L+  LE+  V  +  N  ++  +      L + I     T++++
Sbjct: 395 DALAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDAKI---FAGLGLTIAPIDDTMLMS 451

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
            +                    + E + L       +T            +       +Y
Sbjct: 452 YALN--------SGIHNHGMDALSE-RYLAHNPIPIKTLLGTGKSAVTFDKVPIDEAVKY 502

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++   +P   +          E+ L  +   +   G  VD  +   ++  
Sbjct: 503 AAEDADITLRLWHMFKPQLHQKQVTTVYETLERPLVPVLARMERHGILVDRDVLSRMSNA 562

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+  L  G   +    ++L   LF E  L      +T    T   VL   
Sbjct: 563 FAQKMGGLEAEIHELA-GRSFNVGSPKQLGEILFDEMALEGGKKGKTGAYATGADVLEDL 621

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   +V + R                                 S+           
Sbjct: 622 ATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQD 650

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
              P   R H    Q         ++DP+   I         +R   +A  GK+LV  D 
Sbjct: 651 HIDPNTGRVHTSYVQTGASTGRLASTDPNLQNIPVRSEEGRRIREAFVADAGKRLVSLDY 710

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +AG     +AF  G D++  T +  F V   ++T D R   K +   + Y
Sbjct: 711 SQIELRILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIY 770

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                   +                          +A+ F     E  P           
Sbjct: 771 GISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP----------- 800

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                    R       E          +     + +  R+                 + 
Sbjct: 801 -------GIRAYMDETVEF--------AKAHGYVQTLFGRR-----------------IH 828

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617
            P   +   R     R+ +N                    +Q  + DI+   M+      
Sbjct: 829 TPEIAAKGPRAGFAKRAAINAP------------------IQGTAADIIRRAMIRMPEAI 870

Query: 618 TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
                 ++L VHDE++ E  +   +   +    +M      A    +PL  + 
Sbjct: 871 ADLPCKMLLQVHDELLFEAEEDAVDAVITAAREVMEGAADPAVHLDVPLTVDA 923


>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 933

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 103/595 (17%), Positives = 179/595 (30%), Gaps = 94/595 (15%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   PV+L D          L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTQALA---QLVPLLT 415

Query: 63  NTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +  V  +  +  ++  V++        +  D  +  ++     AR +    A + +G   
Sbjct: 416 DPAVRKLGQHGKYDLHVMRRHGVELAGYAHDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                   +G + I                 P  + +      Y   D  +T  +   L 
Sbjct: 476 VKYEDVCGKGAKQI-----------------PFAQISLEDATRYAAEDADITLRLHHVLG 518

Query: 177 PLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P               E  L  +   I   G CVD A     +  +        Q+   L
Sbjct: 519 PKLAAEPGLERVYREIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATEL 578

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L+  LF E  L           +T +  L +                
Sbjct: 579 A-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP-------- 629

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                  R  L++ G ++         P    P+  R H    Q
Sbjct: 630 -----------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQ 666

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+ 
Sbjct: 667 AGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDP 726

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G
Sbjct: 727 GLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLG 783

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +        +    +           R   E   + A +  ++ T   R +      ++ 
Sbjct: 784 IGRGEAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAG 836

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
                    +A       G A    KR  V +  ++        ++L     LV+
Sbjct: 837 SQGQRAGAERAAINAPMQGTAADIIKRAMVSVDGWIAGHAQRAKMILQVHDELVF 891


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/609 (16%), Positives = 188/609 (30%), Gaps = 100/609 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQ 55
           ID ET S             +     +        P E +          +     V+ +
Sbjct: 322 IDLETSS------------LDPFDCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVL-K 368

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
            LKE LE+    IV  N  F+  VL       +P        ++A     P         
Sbjct: 369 KLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPP---HFDTMIAAYLLEPNEKKFNLDD 425

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    KM   +EL++ F                          Y   D  +T  ++K
Sbjct: 426 LALKFLGYKMTSYQELMS-FSSPLF-------GFSFADVPVEKAANYSCEDADITYRLYK 477

Query: 174 RLE-PLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L   L            E  L  +   +   G  VD      L++    +  +L +E+ 
Sbjct: 478 ILSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIY 537

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFN 278
            +  G   +    +++   LF + G+     T  T        VL            +  
Sbjct: 538 RIA-GEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE 596

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          +    +         P    P+  R H  
Sbjct: 597 -------------------------------YRKIQKLKSTYIDALPKMVNPKTGRIHAS 625

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392
            +Q  T      +SDP+   +         +R  ++       +V AD + IE R+LA +
Sbjct: 626 FNQTGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHL 685

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  LKAFE G D++  T +R FNV P +VT++ R  GK++  ++ Y           
Sbjct: 686 SGDENLLKAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV-- 743

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+ +     ++   +    +    ++ + +     E        G   +  +   R 
Sbjct: 744 -RLGVPVKEAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARD 800

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571
           ++++         +    T   G A    K   + +    K++     +++     LV+ 
Sbjct: 801 RNTQAEG-----ERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFE 855

Query: 572 DVGNNRSYL 580
                +  L
Sbjct: 856 VPDEEKDAL 864


>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
 gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
          Length = 908

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 113/669 (16%), Positives = 194/669 (28%), Gaps = 150/669 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----QVLKEALENT 64
           D     + + A    ++  +F   +         H        +P       LK  LE+ 
Sbjct: 336 DTETTSLDQMA--AKLVGMSFAIVEGEAAYLPLAHIYPAAPAQLPLAEVLAKLKPWLESD 393

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
               +  N  ++  VL     L +       TL+ +              A +       
Sbjct: 394 AHPKLGQNLKYDAHVLANH-GLRLG-GIAHDTLLQSYVLESDRPHDMDSLAKRHLGIDTI 451

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179
               +    C     +  +D      + A     EY   D  +T  + ++L P       
Sbjct: 452 PYTAV----CGKGVGQICFD------QVAIERATEYAAEDADITLRLHRKLWPQLEAAPA 501

Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E     +   +   G  +D  L    ++ +      L++E   L  G   + 
Sbjct: 502 LAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQSEELGRRLMTLEREAHDLA-GQPFNL 560

Query: 234 RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              ++L   LF + GL +   T T    T + VL+      P    +  +R         
Sbjct: 561 GSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLAQLADDYPLPKLLLEHR--------- 611

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P     +  R H    Q +      
Sbjct: 612 ----------------------GLSKLKSTYTDKLPRMVNAKTGRVHTSFSQAVAVTGRL 649

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +S+P+   I         +R+  IA     +V AD + IE R++A ++ +   L++F  
Sbjct: 650 ASSEPNLQNIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAE 709

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F + P +VT +QR   KV+   L Y   A     +A   GL     A 
Sbjct: 710 GEDVHRATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSA---HGLAKNLGLERAAAAA 766

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +    A               E     A    ++ T   R +    +  +  +      
Sbjct: 767 YIDRYFARYP------GVAAYMERTRSEARARGYVETVYGR-RLYLPEIRASQAGRRQAA 819

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A       G A    K+  +                                     T
Sbjct: 820 ERAAINAPMQGTAADLIKKAMI------------------------------------AT 843

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643
           R+                       LA+  +        +VL VHDE+V E P  + E  
Sbjct: 844 RRW----------------------LADAALR-----SRLVLQVHDELVLEVPRDELETV 876

Query: 644 ASMLYHLMT 652
            + L  LMT
Sbjct: 877 RATLPGLMT 885


>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
 gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
          Length = 948

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/583 (16%), Positives = 192/583 (32%), Gaps = 83/583 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVA 70
           D     +        ++  AF ++           +    Q L EAL    E  ++  + 
Sbjct: 380 DTETTDLDP--LQAELVGIAFSWEKTKGFYVPFPSEKEEVQKLIEALRPFFEAEEIEKIG 437

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VL      D+ +   +   ++A     P         A    +      +EL
Sbjct: 438 QNLKYDIKVLAKY---DVEVKGKLFDTMIAHYLINPDMRHNMDVLAETYLNYTPVSIEEL 494

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I +  K +                     EY   D  VT ++ +  +             
Sbjct: 495 IGKKGKNQKS---------MADVPVDQQTEYAVEDADVTLQLKEHFQKELGEANTQKLFD 545

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +D     +L++ ++ +   L++ +     G   +    ++L
Sbjct: 546 EIEIPLVQVLADMELEGINLDQEFLGSLSEALNNDIASLEKSIYEEA-GEEFNIGSPKQL 604

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T T    T + VLS           V                  
Sbjct: 605 GEILFDKLKLVDKPKKTRTGQYSTAEDVLSYLAPDHEIVQHVL----------------- 647

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                          + G S+         P Q   +  R H +  Q +       +++P
Sbjct: 648 --------------DYRGLSKLKSTYVDALPAQVNAKTGRVHTDYMQTVAATGRLSSNNP 693

Query: 355 DPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   +   E   L+ AD + IE R++A ++ E+  +KAF+ GED+
Sbjct: 694 NLQNIPIRTERGRQVRKAFVPRNEDYVLLAADYSQIELRIIAALSQEETMMKAFQEGEDI 753

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T A+ FNV   +VT++QR+  K +   + Y   A     +++ T L  +    L+ T
Sbjct: 754 HASTAAKVFNVPIDEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLTRSESKELIDT 810

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               + +    N+     +   E+      +G      ++  +  +S  + +     +  
Sbjct: 811 YY--KTYPKLRNYMSEQVDFARENGYVSTVLGR-----RRYLKDINSSNAVVRGAAERNA 863

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570
                 G A    K   + + +  KDK     ++L     LV+
Sbjct: 864 VNAPIQGSAADIIKIAMIKIHHKLKDKGLRTKMLLQVHDELVF 906



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYH 649
                +Q  + DI+   M+       D      ++L VHDE+V +   ++ E    ++  
Sbjct: 863 AVNAPIQGSAADIIKIAMIKIHHKLKDKGLRTKMLLQVHDELVFDVYKSELEEVQELIKS 922

Query: 650 LMTSNPSWAKGLPLKAE 666
            M    ++   +PL  E
Sbjct: 923 EMEH--AFKLDVPLDVE 937


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/606 (16%), Positives = 208/606 (34%), Gaps = 91/606 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALE 62
           D ET S   L          D  ++  AF ++ H         D      + + L+   E
Sbjct: 374 DTETTS---LKTL-------DAELVGIAFSWESHKGFYVAFPEDQNEAQELVEKLRPFFE 423

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           +T++  V  N  ++  VL    N  + +   +   +LA     P         A    + 
Sbjct: 424 STEIEKVGQNLKYDIKVLA---NYKLKVKGPLFDTMLAHYIINPDMRHNMNILAETYLNY 480

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177
             +  ++LI +  KG+  + +          +     +Y   D  +T ++    E     
Sbjct: 481 SPQPIEDLIGK--KGKRQKTMRT-------VSLEDQTQYAVEDADITFQLKTYFEKELKE 531

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   +   G  +D +    +++ +D +  +L++ +     G   
Sbjct: 532 ASNEPLFKDMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERLEKSVYVEAEG-EF 590

Query: 232 SSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    ++L   LF +  +       +    +T + VLS+  K      +V   R      
Sbjct: 591 NIGSPKQLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNYAKDHKIVREVLEWRQL---- 646

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      S+         P Q  PR  R H E  Q +   
Sbjct: 647 ---------------------------SKLKSTYVDALPKQIHPRTKRVHTEFMQTVAAT 679

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I         VR   +   E   L+ AD + IE R++A ++ E+  + 
Sbjct: 680 GRLSSNNPNLQNIPIRTERGREVRKAFVPRDENYVLLAADYSQIELRIIAALSQEKTMMN 739

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ GED++ +T AR F V   +VT+ QR+  K +   + Y   A     +++ T L  N
Sbjct: 740 AFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTVNFGIIYGVSAF---GLSNQTDLTRN 796

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L++T    + +    ++     E   EH      +G      ++  +  +++   +
Sbjct: 797 ESKELIETYY--KTYPKLRDYMDEQVEFAKEHGYVKTVMGR-----RRYLKDINAKNHIV 849

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSY 579
            +   +        G A    K   + +    +++N    ++L     L++    +    
Sbjct: 850 RSAAERNAVNAPIQGSAADIIKVAMINIYDALEEQNFKSKMLLQVHDELIFDAHKDEIDA 909

Query: 580 LNTTTR 585
           L    +
Sbjct: 910 LTALVK 915


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 93/583 (15%), Positives = 193/583 (33%), Gaps = 81/583 (13%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTI 68
            +D    G+   A D  ++  +F +                     +VL+  LEN ++  
Sbjct: 361 SMDTETTGLD--ANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVLRPLLENENIRK 418

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGK 127
           +  N  ++  +LK  + +++         +LA     P         +            
Sbjct: 419 IGQNLKYDYIILK-WYGIEL--KGEFFDTMLAHYLLDPDTRHNMDVLSENYLGYTPISIT 475

Query: 128 ELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS------- 179
           ELI +            +N+ N R+       +Y   D  VT ++ +  EP+        
Sbjct: 476 ELIGKG-----------KNQLNMRDIDVAKVTDYAAEDADVTLQLQQVFEPMLIEAQAEK 524

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   +   G  +DV      ++ +  +  KL+  +     G   +    
Sbjct: 525 LAKEVENPLINVLGDMEKEGVKIDVEQLIRFSRDLQDDIGKLENTIYHKA-GHRFNIASP 583

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   LF +                     +L P+A +    + +     +L L    +
Sbjct: 584 KQLGEILFDKL--------------------QLDPKAKKTKTGQYQTGEDVLLALANKSD 623

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +         L F    +         P     +  R H   +Q +       +++P+ 
Sbjct: 624 IVKD------ILDFRQLQKLKSTYVDALPLMINKKTGRVHTSYNQAVAATGRLSSNNPNL 677

Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         VR   I   E   L+ AD + IE R++A ++ ++  + AF  G D++ 
Sbjct: 678 QNIPIRTEKGREVRKAFIPRDENHILLSADYSQIELRIIAEISKDENMMDAFSKGLDIHT 737

Query: 411 TTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T A+ + VA    VT DQR   K +   + Y   A    +     G+     A +++  
Sbjct: 738 ATAAKVYGVANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQ---NLGIPRKEAAEIIE-- 792

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
           +  E+++  +N+         E+   +  +G      ++  R  +S  + +     +   
Sbjct: 793 NYFEQYKGIKNYMSDTMNFARENGYVETIMGR-----RRYLRDINSANATVRGFAERNAI 847

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                G A        + +  +   K+ +   L S  ++   D
Sbjct: 848 NAPIQGSAA-----DMIKIAMLNIHKDLIDRKLQSKMTMQVHD 885


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 110/694 (15%), Positives = 199/694 (28%), Gaps = 168/694 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMPQ---- 55
            +D ET S   +          D  ++       +       + L          Q    
Sbjct: 384 SLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLSIE 433

Query: 56  ----VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
                L+  +E+        NS F+R +    FN  + +       +LA           
Sbjct: 434 YVFSKLRNWIEDPKKEKALQNSKFDRQI---FFNHGLILKGVTFDTLLADYLLN------ 484

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                      + E    +  F K  + +    +NK            YC  DV +T +I
Sbjct: 485 -----NQEKHGLSEISFRLFGF-KPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKI 538

Query: 172 FKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            K  +                 E  L  +   +   G  +D+     L++ +      ++
Sbjct: 539 VKIFKERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIE 598

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274
            ++  L      +    ++L   LF +  L  +   +T     T   VL           
Sbjct: 599 SKVYELA-EENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQ 657

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R                                 S+         P     +  R
Sbjct: 658 HLIKHR-------------------------------TLSKLLSTYIDALPNLINEKTGR 686

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H   +Q  T      +S+P+   I      S  +R   +  +  KL+ AD + IE R+L
Sbjct: 687 VHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNCKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F     Q++ D+R +GK +   + Y  G    +
Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFGVIYGMG---IK 801

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           K A +TG++       +      E +     F     E     A+   ++ T   R ++ 
Sbjct: 802 KFARSTGVSTPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE- 854

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                     K DKN L  ++       
Sbjct: 855 -----------------------------------------FKFDKNGLGRLIGKDPY-- 871

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG----- 621
                          +   R       L       +Q  S DI+   M+   K       
Sbjct: 872 -----------EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNV 920

Query: 622 -YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTS 653
              ++L VHDE++ E   D+ E    ++   M  
Sbjct: 921 PAKMLLQVHDELLFEVEQDSLEITTKLVKKTMED 954


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/615 (16%), Positives = 192/615 (31%), Gaps = 102/615 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            TL +D ET +  D         A    ++  +F  ++             +P+  +EAL
Sbjct: 348 KTLSLDTET-TSTD---------AISAELVGLSFSVEEKEAYYV------PIPENREEAL 391

Query: 62  ----------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK 110
                     EN  +  V  N  ++  VL    N  + +   +   ++A     P     
Sbjct: 392 KRVAIFKPVYENESILKVGQNIKYDYEVLS---NYGVKLKGAMFDTMIAHYLIQPELRHN 448

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A  L   +    +EL+    KG+  + + D +  +         EY   D  +T  
Sbjct: 449 MDYMAETLLGYQTIHIEELLG--SKGKKQKNMRDLSPTD-------IYEYAAEDADITLR 499

Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +   L P   +          E  L  +   +   G  +D       ++I      + + 
Sbjct: 500 LKNVLAPKLKELNVEELFWSIEMPLVRVLADMELTGVRIDTEALKETSKIFTERMRQYEV 559

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQ 275
           ++     G   +    +++   LF +   L     T+T    T + VL S +   P    
Sbjct: 560 KIFKEA-GEEFNISSPKQVGDILFGKMQILDKPKKTKTGQYVTSEEVLQSIESKHPIV-- 616

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                                        R  L + G  +         P     R    
Sbjct: 617 -----------------------------RNILNYRGMKKLLSTYVEALPKLINSRTGHI 647

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H   +Q +T      +SDP+   I         +R C I  EG     AD + IE R++A
Sbjct: 648 HTSFNQALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEEGCMFFSADYSQIELRIMA 707

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++AF  G D++  T A+ ++ A   VT  QR   K     + Y         
Sbjct: 708 HLSEDDNMMEAFREGYDIHRATAAKIWHEALDDVTDAQRKKAKQANFGIIYGITTF---G 764

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A    +  N    L++      ++       +   E+  E A    +  T   R ++  
Sbjct: 765 LAQRMEIPNNEARALIQ------DYFRTFPKVQAYMEHAKELARSKGYAETLFHR-RRYL 817

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLV 569
              +SR   +     +        G      K   V +    K++     ++L     L 
Sbjct: 818 PNINSRNGTIRGFDERNAINAPIQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDELN 877

Query: 570 YRDVGNNRSYLNTTT 584
           +    + R  +    
Sbjct: 878 FSVYPDEREKVEKIV 892


>gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10]
 gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10]
          Length = 896

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 108/676 (15%), Positives = 211/676 (31%), Gaps = 167/676 (24%)

Query: 24  YAEDVCVILFAFGFDDH--PVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERT 78
           Y +D+C+    F  ++   P  +           +   L+E  E+ D+    H    +  
Sbjct: 344 YLDDLCI----FACNEEYAPANIIFSEKLTC-ETVVNELREIFESKDIEKYGH----DLK 394

Query: 79  VLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            L     +  I +   I    +A     P+          +S    ++ K+ I       
Sbjct: 395 NLYKYLKSHGIELENVIFDTFIAAYILEPTR-----STYTISELSEDKLKQSI------T 443

Query: 138 THECLYDRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPLS----------SKEQELW 186
             E LYD++     +   +   E C   V     + ++L P+             E  L 
Sbjct: 444 PVEILYDKHGKRLEQGQDVSSSEVCAAAVNAIYGLTQKLRPIIRDNGQDELYYKIELPLV 503

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +   +  RG+ VDV      ++ +D     L+ E+  +  G   +    ++L   LF +
Sbjct: 504 EVLANMELRGFKVDVENLKAYSKELDSRLVILENEIY-MQAGETFNINSPKQLGVILFEK 562

Query: 247 TGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
            GL +   T+T         ++L        ++   R                       
Sbjct: 563 LGLPVGKKTKTGYSTSAEVLEQLSYKHEIVERILEYRQLM-------------------- 602

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
                      +             L +  + H   +Q +T      +++P+   I    
Sbjct: 603 -----------KLKSTYADGL-LSVLEQDGKIHSNFNQTVTATGRISSTEPNLQNIPVKL 650

Query: 361 --SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   I  +    L+ AD + IE RVLA + G+   ++AF   ED++ TT ++ F
Sbjct: 651 EMGRKIRKVFIPTNSDYVLLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVF 710

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            + P +V+   R+  K +   + Y  G  +        G+        +       ++ D
Sbjct: 711 GIPPEEVSSLMRSRAKAVNFGIVYGIGDFSLS---KDIGVTKKEARKYID------DYLD 761

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
             +  +    +  E   E  F+                                      
Sbjct: 762 KYSKVKEYMSDTVEKGKEFGFV-------------------------------------T 784

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
            +  +RR +P +   K  N  +                 R  +NT               
Sbjct: 785 TLYNRRRYLPEL---KSSNFNMRSF------------GERVAMNTP-------------- 815

Query: 598 TENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHL 650
               +Q  + DI+   M+         K    ++L VHDE++ ET  ++ E  + +L   
Sbjct: 816 ----IQGSAADIIKISMVKVYTELKKRKLKSKLILQVHDELIVETEKSELEEVSKLLKDC 871

Query: 651 MTSNPSWAKGLPLKAE 666
           M +       +PL  +
Sbjct: 872 MENAVQ--LKVPLTVD 885


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 112/655 (17%), Positives = 207/655 (31%), Gaps = 151/655 (23%)

Query: 46  DCVHDPVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           D     + P  + E+         LEN  +  V  N  ++  V +       P    +  
Sbjct: 378 DLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRYGVRVAPYDDTM-- 435

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKEL-IARFCKGETHECLYDRNKPNHRE-AW 154
                       L +  +A  L +  M+E  E  +   C      C   +++    E   
Sbjct: 436 ------------LISYVQAAGLHNHGMDELAERHLGHTCISFKEVCGTGKSQKRFSEIDL 483

Query: 155 RLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALA 204
           +   EY   D  +T  +++ L+             + E+ L  +   +   G  VDVA  
Sbjct: 484 KTATEYAAEDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQL 543

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQ 260
             L+     +  + ++    L  G   +    +++   LF E GL     T++    T  
Sbjct: 544 SRLSSDFAQKMAEAEETAHKLA-GTKFNLGSPKQIGEILFGEMGLPGGKKTKSGAWSTDA 602

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL           +      + S+      + L +A+N                     
Sbjct: 603 AVLDELAAQGHDLPKALLTWRQFSKLKSTYSDALKDAIN--------------------- 641

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375
                    P   R H       T      +S+P+   I         +R    A  G  
Sbjct: 642 ---------PNTGRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRKIREAFTAEPGHV 692

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           +V AD + IE R+LA +A  +   +AF  G+D++  T +  F V    +    R   K +
Sbjct: 693 IVAADYSQIELRLLAHIADVEALKQAFREGQDIHALTASEMFGVPLENMDPTTRRNAKAI 752

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y   A     +A+  G+  +     + +                           
Sbjct: 753 NFGIIYGISAF---GLANNLGIGRDEAKSYIDSYF------------------------- 784

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                           +K   + +  + +    +   +   + I  +R  +P +   KDK
Sbjct: 785 ----------------KKFPGIKDYMDAMKDEAKA--KGCVSTIFGRRIHLPGI---KDK 823

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
           N      PS R          R  +N   +         G   + I +A+ R     G +
Sbjct: 824 N------PSVRQFT------ERQAINAPIQ---------GAAADIIRRAMVR---MPGAL 859

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL--PLKAEG 667
           +       ++L VHDE+V E P+++      L   +M++    A+ L  PL+ E 
Sbjct: 860 SDAGLKTRMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPAQNLSVPLEVEA 914


>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
 gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
          Length = 913

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 118/655 (18%), Positives = 206/655 (31%), Gaps = 156/655 (23%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D PV+      D V+   LK  LE+ D   V  +  ++  VL         +     TL+
Sbjct: 377 DAPVQ---LPRDEVL-AKLKPWLESADHKKVGQHLKYDEQVLANYGIEMRGVE--HDTLL 430

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            +              AL+    K  + +++  +  +                 A     
Sbjct: 431 ESYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAQQ----------IGFDEVALDKAA 480

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207
           EY   D  +T  + + L P  + E  L ++ + I              G  +D       
Sbjct: 481 EYAAEDADITLRLHQALYPQIAVENSLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQ 540

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263
           +  +     +L+     L  G   +    +++    F +  L +   T +    T + VL
Sbjct: 541 SGEIATRLIELEGSAYELAGG-EFNLGSPKQIGQIFFEKLELPVIKKTPSGAPSTDEEVL 599

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               +  P    +  +R                               G S+        
Sbjct: 600 QKLAEDYPLPKILLEHR-------------------------------GLSKLKSTYTDK 628

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
            P    PR  R H    Q +       ++DP+   I         +R   IA  G KLV 
Sbjct: 629 LPRMVNPRTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  ++AF  GED++  T +  FNV P +V+ DQR + KV+   
Sbjct: 689 ADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINFG 748

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y   A     +AS  G+  +                                      
Sbjct: 749 LIYGMSAF---GLASNLGITRD-------------------------------------- 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
              A +     +  ++  V+   +E   + +      + +  R+                
Sbjct: 768 ---AAKMYIDRYFARYPGVARYMDETRLSAK-AKGYVETVFGRR---------------- 807

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            L LP              +  N   RQ               +Q  + D++   M+   
Sbjct: 808 -LWLP------------EINGGNGPRRQAAERAA-----INAPMQGTAADLIKMSMIAVQ 849

Query: 619 ------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                 K G  +++ VHDE++ E PD +       L  LM      A  +PL AE
Sbjct: 850 NWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVA--ALKVPLVAE 902


>gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
 gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
          Length = 1041

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 107/624 (17%), Positives = 185/624 (29%), Gaps = 151/624 (24%)

Query: 56   VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
             LK   E+  +    HN+ ++  V+       I +       +LA     P    L    
Sbjct: 512  QLKPIFEDASIGKYMHNAKYDIAVM---LRYGIQVEGLSFDSMLAAYLIEPGRRGLGLKE 568

Query: 114  EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            +A +  S  M    ELI    K  +   +  R             +Y   D  +T  +  
Sbjct: 569  QAFQRLSILMTPITELIGSGSKIISMAQVPIR----------RAADYAGSDADMTLRLVV 618

Query: 174  RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             L     K          E  L  +   +   G  +D    H   + ++ +  K +Q + 
Sbjct: 619  PLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGEQLNEQLRKAEQTIY 678

Query: 224  SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280
                G   +    ++L   LF+E  L     T+T       V+ + + + P    +   R
Sbjct: 679  D-AVGHHFNVNSPKQLGEVLFVELKLPAGKKTKTGYSVSADVIENLRGMHPAIDSLLEYR 737

Query: 281  MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                             S+               +  R +   +
Sbjct: 738  QL-------------------------------SKLKSTYIDGLQTLMDRQTGRVYTSFN 766

Query: 341  QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
            Q I       +S+P+   I     +   +R   IA     L+ AD + IE R+LA +  E
Sbjct: 767  QTIASSGRLSSSNPNLQNIPVRTELGRQIRRAFIADPSYVLLTADYSQIELRILANITNE 826

Query: 396  QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               ++AF  GED++  T A  F+V   +VT+DQR + K +  A+ Y   A    +    T
Sbjct: 827  PRLVEAFNQGEDIHTITAASLFSVPVEEVTRDQRRLAKTVVYAVLYGQSAYGLSQ---VT 883

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            G+     A  +K                                            + H 
Sbjct: 884  GMRPGDAADFIK--------------------------------------------RYHE 899

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                +   +    EQ    G       R+                 +P  R L + +   
Sbjct: 900  TFPNIKVYVESTLEQARRQGYVNTCFGRK---------------RFIPDMRVLSHVE--- 941

Query: 576  NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVH 629
                     RQ               +Q  + D++   M+    A         ++L VH
Sbjct: 942  ---------RQALEREA-----VNMPIQGSNADLIKVAMLRLQHAFLQNGMKTRMILQVH 987

Query: 630  DEIVCETPDTDEFNASMLYH-LMT 652
            DE+V E P  +   A  +   +M 
Sbjct: 988  DELVFEVPVEELERAKRIVKAVME 1011


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/646 (14%), Positives = 189/646 (29%), Gaps = 158/646 (24%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLAR 101
             D  + + L     +  V I+ HN  ++  VL+           D  +  W+       
Sbjct: 384 FDDDAVRERLVRLTSSPSVRIIGHNFKYDYKVLRRWGVVTKNLAFDTMVAAWLLDTTANS 443

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
               P A   +G        K    K+++              ++      +      Y 
Sbjct: 444 YGMDPLAASLLG-------YKTISFKDVVP-------------KDGLFQDISVETATRYA 483

Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  +T   ++       +          E  L  +   +   G  +         + +
Sbjct: 484 AEDADITFRFYELFRRQLKERGLEKLFFELEMPLVPILAEMECAGITLLSDRLEAYGREL 543

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           + +   ++ ++     G   +    ++L+  LF E  L     T+T     +S  ++L  
Sbjct: 544 EKDLGTIEDDIWQ-ACGHSFNINSTKQLQQVLFEERKLTPIKKTKTGYSTDISVLEELAR 602

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
           + +                                 L+    ++         P    P 
Sbjct: 603 EDVVPLL----------------------------VLRHRSLAKLKSTYVDALPKLVNPE 634

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H +L Q  T      + DP+   I         +RS  + +EG   + AD + IE 
Sbjct: 635 TGRIHTQLIQTGTATGRLSSKDPNLQNIPIRDEDGRRIRSAFVPAEGNLFISADYSQIEL 694

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
            VLA ++ +    +AF +G D++  T +  F+V+ A V+ +QR I K +   + Y   A 
Sbjct: 695 VVLAHLSEDPELSQAFRSGGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMSAF 754

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++   G++ +     +                                      R+
Sbjct: 755 ---RLSRELGISRSRADSFISAYFRRYF------------------------------RI 781

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           +   R+      +                   +  + R +P +  +              
Sbjct: 782 QSFMRKVVQETEQ-------------SGVSKTLLGRERSIPAINSRNKT----------- 817

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKA 620
                  G  R  +NT                   +Q  + DI+   M+         + 
Sbjct: 818 ----EKAGAERIAVNTP------------------IQGTAADIVKLAMLAVSRRMASEEL 855

Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665
              +VL +HDE++ E P  +      +L   M S       +PL+ 
Sbjct: 856 KSKMVLQIHDELLFEVPFDEADRMEGLLKEEMESAVK--LSVPLRV 899


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/657 (14%), Positives = 181/657 (27%), Gaps = 168/657 (25%)

Query: 36  GFDDHPVELWDCVHDPVMPQ-VLKEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
              +  + L         P   + +AL EN+++    H++     +L       I +   
Sbjct: 355 AVPEQDIYLLPLQDTDPYPALTVLQALCENSEIKKYFHDAKSALWMLHHH---GIELKSL 411

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
               ++A     P+A       L L    +                              
Sbjct: 412 AFDTMVAAYLLNPTASGYDLIDLALEHLGI------------VLPVNG------------ 447

Query: 154 WRLFGEYCKGDVTVTR--EIFKRLEPLSSK------EQELWYLDQTINDRGYCVDVALAH 205
                   K D  +    E+ K+L            E  L  +   +   G  VD     
Sbjct: 448 --EVSLAAKADAILKLAGELVKKLHLQEEDRLYFEVELPLVQVLADMEMAGVTVDKQGLK 505

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRV 262
            ++  +      L   + +L  G   +    ++L   LF +  L +   T+T       V
Sbjct: 506 EMSAELHDMIESLAHRIHTLA-GEDFNINSPKQLGHILFEKLKLPVYKKTKTGYSTDAEV 564

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L    +       +   R  A                               +       
Sbjct: 565 LEKLAEEHEIVALILEYRQLA-------------------------------KLKSTYTD 593

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKL 376
                  P+  R H    Q +T      +++P+   I         +R   +   +G  +
Sbjct: 594 GLAALVDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVFVPRQKGNLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RVLA M+ +   L+AF  G+D++  T A  F V   +VT D R+  K + 
Sbjct: 654 LTADYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y         +A    ++       +                              
Sbjct: 714 FGIVYGISDF---GLARDLKVSRREAKSYID----------------------------- 741

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                             +R   + + + +  ++    G       RR            
Sbjct: 742 ---------------NYFARCPGVKDYIDRVIKEAKHTGYVTTLLNRRRYLPDLFS---- 782

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                 P+  +  +      R+ +NT                   +Q  + DI+   M+ 
Sbjct: 783 ------PNYNARSF----GERAAMNTP------------------IQGSAADIIKLAMVR 814

Query: 617 ATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
             +          +VL VHDE++ + P+++      L    M +       +PL  +
Sbjct: 815 VARELRERNLQAKLVLQVHDELIFDVPESEVNELVDLVRDCMENALP--LDVPLVVD 869


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/601 (16%), Positives = 185/601 (30%), Gaps = 92/601 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQVLKEALEN 63
           +DL    +          +        P E +          +     V+ + LKE LE+
Sbjct: 322 VDLETSSLDP----FDCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVL-KKLKEILED 376

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQ 121
               IV  N  F+  VL       +P        ++A     P          ALK    
Sbjct: 377 PGAKIVGQNLKFDYKVLMVKGVEPVPP---HFDTMIAAYLIEPNEKKFNLDDLALKFLGY 433

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLSS 180
           KM   +EL++ F                          Y   D  +T  ++K L   L  
Sbjct: 434 KMTSYQELMS-FSSPLF-------GFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHE 485

Query: 181 K---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   +   G  VD      L++    +  +L +E+  +  G   
Sbjct: 486 ADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIA-GEPF 544

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    +++   LF + G+     T  T        VL            +          
Sbjct: 545 NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE-------- 596

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                  +    +         P    P+  R H   +Q  T  
Sbjct: 597 -----------------------YRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTAT 633

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +SDP+   +         +R  ++       +V AD + IE R+LA ++G++  LK
Sbjct: 634 GRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLK 693

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE G D++  T +R FNV P +VT++ R  GK++  ++ Y              G+ + 
Sbjct: 694 AFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV---RLGVPVK 750

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               ++   +    +    ++ + +     E        G   +  +   R ++++    
Sbjct: 751 EAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRRRDIPQLMARDRNTQAEG- 807

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSY 579
                +    T   G A    K   + +    K+      +++     LV+      +  
Sbjct: 808 ----ERIAINTPIQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPDEEKDA 863

Query: 580 L 580
           L
Sbjct: 864 L 864


>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/603 (16%), Positives = 198/603 (32%), Gaps = 86/603 (14%)

Query: 12  SPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTD 65
           S +  D    G+        ++  AF ++                  + + L+   ENT 
Sbjct: 377 SSVCFDTETTGLDPLV--AELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRPFFENTA 434

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKME 124
           +  +  N  ++  VL      ++ +   +   +LA     P         A    +    
Sbjct: 435 IEKIGQNLKYDIKVLAKY---NVKVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNYTPV 491

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------- 177
              ELI +  K +               +     EY   D  +T ++ +  E        
Sbjct: 492 SITELIGKKGKNQKS---------MRDVSVDDQTEYAVEDADITLQLKQHFEKELDEAGT 542

Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G  +DV+   +L+  ++ +  +L  E+ +   G   +  
Sbjct: 543 RKLFDDIEIPLLRVLAAMEVEGINLDVSFLQSLSGDLNADIERLTSEIFAEA-GEEFNIG 601

Query: 235 CLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L      T+T    T + VLS   K      +V             
Sbjct: 602 SPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVL------------ 649

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                               + G S+         P Q   +  R H +  Q +      
Sbjct: 650 -------------------DYRGLSKLKSTYVDALPEQV-AQDGRVHTDYMQTVAATGRL 689

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +++P+   I         VR   +   E   L+ AD + IE R++A ++ E+  ++AF 
Sbjct: 690 SSNNPNLQNIPIRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFT 749

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++ +T A+ FNV   +VT++QR+  K +   + Y   A     +++ T L+     
Sbjct: 750 DGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGEAK 806

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L+                R       E A E+ ++ T  +R ++     +S    +   
Sbjct: 807 ELIDNYYKSYPK------LRNYMSELVEFARENGYVKTVLDR-RRYLNGINSSNGVVRGA 859

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNT 582
             +        G A    K   + +    ++ +    ++L     LV+    +    +  
Sbjct: 860 AERNAVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNDELDAIKE 919

Query: 583 TTR 585
             +
Sbjct: 920 LIK 922


>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
 gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
          Length = 917

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 121/701 (17%), Positives = 210/701 (29%), Gaps = 170/701 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCV-ILFAFGFDDHP---VELWDCVHDPVMPQVL---- 57
           ID    +  D         A D  +  L    F   P     L      P MP+ L    
Sbjct: 336 IDAAALTAFDTETT-----ALDPMIARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDE 390

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
                K  LE+ D   V  +  ++  VL         I     TL+ +            
Sbjct: 391 VLARLKPWLESADRKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMD 448

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+    K  + +++  +  K    + +       +                +T ++ 
Sbjct: 449 SLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD----------ITLQLH 498

Query: 173 KRLEPLSSKE--QELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P  ++E   E  Y D  +            G  +D AL    +  +     +L+ +
Sbjct: 499 QALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQ 558

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277
              L  G   +    +++    F +  L +         +T + VL    +  P    + 
Sbjct: 559 AYELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLL 617

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R                               G S+         P    P   R H 
Sbjct: 618 EHR-------------------------------GLSKLKSTYTDKLPRMVNPATGRVHT 646

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +       ++DP+   I         +R   IAS G ++V AD + IE R++A +
Sbjct: 647 NYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHI 706

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A     +A
Sbjct: 707 SGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLA 763

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           S  G+  +     +                                           +  
Sbjct: 764 SNLGITRDAAKLYID-----------------------------------------RYFT 782

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V++   +   A +      + +  R+                 L LP         
Sbjct: 783 RYPGVAQYMEDTRTAAKDK-GYVETVFGRR-----------------LWLP--------- 815

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626
                +  N   RQ               +Q  + D++   M+         +    +++
Sbjct: 816 ---EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIM 867

Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            VHDE+V E PD +       L  +M         +PL AE
Sbjct: 868 QVHDELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAE 906


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/605 (15%), Positives = 188/605 (31%), Gaps = 91/605 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDPVMPQVLKE---ALE 62
           D ET   ID  K G+         +  +F   ++    +          ++L     AL+
Sbjct: 372 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPAAREEADKILAHFSPALQ 421

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           N     +  N  F+  V++      I I   +   ++A     P         A      
Sbjct: 422 NPKSLKIGQNIKFDILVVRKY---GIRIAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 478

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    +ELI         + L  R+ P          EY   D  +T ++     P   K
Sbjct: 479 KTVRIEELIG----PRERKQLTMRDVPV-----VQVAEYAAEDADITLKLKNYFTPCLEK 529

Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           E            L Y+   +   G  +D       ++ +     KL++E+  L  G+  
Sbjct: 530 EGLESLFYDIEMPLIYVLAEMEYTGVTLDTVALKQSSEELTTALKKLEKEIYELA-GMKF 588

Query: 232 SSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +     ++   LF    +       +  + +T + +L   +   P   ++   R      
Sbjct: 589 NINSARQVGEVLFDHLKIEEKARKTKTGSYSTSEEILEKMRSKHPVVGKLLEYR------ 642

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                    G  +         P    P   + H   +Q +T  
Sbjct: 643 -------------------------GLKKLLSTYIDALPELINPETGKIHTSYNQAVTST 677

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I     +   +R    A  E      AD + IE R++A ++ +   ++
Sbjct: 678 GRLSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIE 737

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + +   +VT D R   K     + Y         +A    +   
Sbjct: 738 AFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLSIPRA 794

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L++     + + D     R   +   E A E  ++ T  +R K+     +S  + +
Sbjct: 795 ESKELIE--GYFKTYPD----IRAYMDESIEVAKEKGYVETIYKR-KRFLPDINSHNAIV 847

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSY 579
                +        G A    K   V +    + +     ++L     L +    +    
Sbjct: 848 RGYAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDELEK 907

Query: 580 LNTTT 584
           +    
Sbjct: 908 VKQIV 912


>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
 gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
          Length = 905

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 118/638 (18%), Positives = 196/638 (30%), Gaps = 156/638 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEA 115
           LK  LE+     + H++ ++  V     N  I +      T++ A        +     A
Sbjct: 385 LKPWLEDATRAKLLHHAKYDAHV---FANEGIKLAGITEDTMLQAYVLESHRGVGLNDLA 441

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +   +     ++L  +  K                 A    G Y   D   T ++ + L
Sbjct: 442 QRYLGRSGVSYEDLCGKGAKQ----------IGFDEVAVDKAGHYAAEDSDFTLQLHQVL 491

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P+ +           E ++  +  T+   G  VD A     +  +  E  +L+Q+   L
Sbjct: 492 RPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHKLGQEMLQLEQKAYEL 551

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L   LF    L +   T     +T + VLS   +  P    +   R 
Sbjct: 552 A-GQPFNLNSPKQLGEILFGRMQLPVVRKTASGAPSTDEEVLSKLAQDYPLPQVLLEYR- 609

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 610 ------------------------------GLSKLKSTYTDKLPRMINPNTGRVHTHYSQ 639

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    +SDP+   I         VR   IA +G  L+ AD + IE R++A ++ + 
Sbjct: 640 AAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-MLLSADYSQIELRIMAHVSDDA 698

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AFE GED++  T +  F V+   V+ +QR   K +   L Y  G      +AS  G
Sbjct: 699 NLQRAFEAGEDIHRATASEVFGVSLEDVSTEQRRAAKAINFGLIYGMGVF---GLASNLG 755

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +    A               ++    A E  ++ T   R           
Sbjct: 756 ITRDAAQAYIDRYFARYP------GVAMYMDDTRRRAREQGYVETVFGR----------- 798

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGN 575
                                                      L LP  R     R  G 
Sbjct: 799 ------------------------------------------RLQLPEIRGASGPRRQGA 816

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVH 629
            R+ +N                     Q  + D++   M      + A K    +++ VH
Sbjct: 817 ERAAINAPM------------------QGTAADLIKMAMIAVQDWLEAEKLQTRMIMQVH 858

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E PD + E     L  LM +  +    +PL AE
Sbjct: 859 DELVLEAPDAELELVKEALPRLMCNVAT--LRVPLVAE 894


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 113/633 (17%), Positives = 201/633 (31%), Gaps = 142/633 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  + +N  +   ++K    +  P    +             AL A     
Sbjct: 442 LKPILEDQAVLKIGYNMKYNWLIMKQYAIVTQPFDDIMLISY---------ALDAGTSTH 492

Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     K + IA   K  TH      +          F  Y      +T  +++ L
Sbjct: 493 NRDILSERWLKHKPIAY--KDLTHNGKKITSFAQVDLKQATF--YAAEGADITLRLWQVL 548

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P    +          + L  +   + +RG  VD  +   L+  +      L++E+  L
Sbjct: 549 KPQLVAQGVTKIYERLDRPLIEVLAKMEERGILVDRQILSRLSCELAQAALSLEEEIYQL 608

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFNNR 280
             G   +    ++L   LF + GL     T+    +T  ++L            ++ + R
Sbjct: 609 -VGERFNIASPKQLSDILFGKMGLPGGVKTKNGQWSTSAQILEELAAEGHTLPRKIVDWR 667

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            ++         P   LP   R H    
Sbjct: 668 QL-------------------------------TKLKSTYTDALPYYILPETGRVHTNYS 696

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              T      +S+P+   I         +R+  IA +G  L+ AD + IE R+LA +A  
Sbjct: 697 LATTSTGRLSSSEPNLQNIPIRTPEGRKIRTAFIAPKGCVLLSADYSQIELRILAHIANI 756

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF   +D++  T ++ F VA   +  D R   K +   + Y   A     +A+  
Sbjct: 757 TALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINFGIIYGISAF---GLANQL 813

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            ++ N                 A  +     E  P   I+D    T      K++ ++H 
Sbjct: 814 SISRNE----------------ASRYIDIYFERFP--GIKDYMETT------KSFARQHG 849

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V  ++                                           GR + Y ++  
Sbjct: 850 YVETIF-------------------------------------------GRRIHYPEIKA 866

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
             S + T   +        G   + I +A+   I  EG +   K    ++L VHDE++ E
Sbjct: 867 TNSQIRTFNERAAINAPIQGSAADIIRRAM---IQMEGALKKEKLSAKMLLQVHDELIFE 923

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGL--PLKA 665
            P+T+     +L   +M +    A  L  PLK 
Sbjct: 924 VPETESEKTKVLVTKVMENAAMPALSLSVPLKV 956


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 112/713 (15%), Positives = 215/713 (30%), Gaps = 181/713 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------VHDPVMPQ 55
           + ID ET S        +  +  +  ++  +    D                  +  +  
Sbjct: 324 ISIDLETSS--------LDPH--EAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQVLL 373

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113
            LKE LE++   IV  N  F+  +L+      +         ++A     P +       
Sbjct: 374 RLKELLEDSGTKIVGQNLKFDYEILEKHGIEPVVP---HFDTMIAAYLLNPDSRRFNLDD 430

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    +     EL+ +         L D+ +    E    +      D  +   +++
Sbjct: 431 LALKFLGYRTTSFSELMNK-------NQLKDQFEKVSVEEAAKYS---VEDADIALRLYR 480

Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L                E EL  +   +   G  ++V     L++  +    K+ +EL 
Sbjct: 481 VLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLKNLSEEYEKRLGKIREELF 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +     ++   LF + GL+    T+    +T   VL       P   ++   
Sbjct: 541 ELA-GEPFNPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAVLEELVNEHPIIQKLL-- 597

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         +    +         P    P   R H   
Sbjct: 598 -----------------------------DYRKYQKLKSTYLDTLPTLVNPVTGRIHASY 628

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMA 393
            Q  T      +S+P+   +         +R CV+  +   K++ AD + IE RVLA  +
Sbjct: 629 HQTGTGTGRLSSSNPNMQNLPIKGEEGKEIRKCVVPQKSDWKIISADYSQIELRVLAHFS 688

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF+ GED++  T +R + V+   VT + R +GK++  ++ Y        +   
Sbjct: 689 EDERLISAFKNGEDVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIYGISPYGLARRLK 748

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                                             E +   +   
Sbjct: 749 --------------------------------------------IKTHIAENMISNYFNA 764

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +  NE+    ++     + +  RKR    + + +      I              
Sbjct: 765 YPGVRKFINEVIHEAKEK-GYVRTLFGRKRE---IPHFRTRNKMKIQE------------ 808

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
              R  +NT                   +Q  + DI+   M+   K           +L 
Sbjct: 809 -GERIAINTP------------------IQGTAADIMKLAMIKIHKMVKEEGLEAFPILQ 849

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYRK 675
           VHDE+V E P T+      +  ++T       G     +PL+ +   +  + K
Sbjct: 850 VHDELVFEAPATE---VDRVCDILTRG---MSGVVELKVPLEVDVAVNSYWGK 896


>gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2]
 gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2]
          Length = 931

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/680 (16%), Positives = 207/680 (30%), Gaps = 166/680 (24%)

Query: 28  VCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENTDVTIVAHNSYFER 77
             ++  +F             H    +P+ L         K  LE+     +  +  +++
Sbjct: 371 ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLNMDMVLARLKPWLEDAGKKKLGQHVKYDQ 430

Query: 78  TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
            V     N  I +  +   T++ +              AL+  S+     ++L    C  
Sbjct: 431 HV---FANHGITVRGYAHDTMLQSYVLEADRPHNLTSLALRHVSRSGISYEDL----CGK 483

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ------ 190
             ++       P  + +      Y   D   T ++   L P       L ++ +      
Sbjct: 484 GKNQI------PFAQVSVDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYELEMQTS 537

Query: 191 ----TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                I   G  +D       +  +     KL++E   +  G   +    ++L    F +
Sbjct: 538 EALFRIERNGVSIDAGELARQSNDLGARILKLEEEAYEIA-GQPFNLSSPKQLGEIFFDK 596

Query: 247 TGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            G+ +   T T    T + VL    +  P   ++  +R                      
Sbjct: 597 LGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRSL-------------------- 636

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                      S+             LP   R H    Q +       ++DP+   I   
Sbjct: 637 -----------SKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRLSSNDPNLQNIPVR 685

Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 VR   +A EGK +  AD + IE R++A ++G++  L AF+ G D++  T A  F
Sbjct: 686 TPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVF 745

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V+  +V+ +QR   KV+   L Y   +     +A   G+     A  +           
Sbjct: 746 GVSVDEVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAAAAYID---------- 792

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                             +   R   +   + Q  E     G  
Sbjct: 793 ----------------------------------KYFQRYPGVKRYMDQTVELAHAQGYV 818

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGK 596
                RR               L+LP        R     R+ +N               
Sbjct: 819 ETVFGRR---------------LVLPEINGGNGPRKKAAERAAINAPM------------ 851

Query: 597 LTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649
                 Q  + D++ + M      ++A K    +++ VHDE+V E P+   ++  + +  
Sbjct: 852 ------QGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAEIPS 905

Query: 650 LMTSNPSWAKGLPLKAE-GY 668
           +M         +PL AE G+
Sbjct: 906 IMAGVAD--LSVPLLAEIGF 923


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 107/646 (16%), Positives = 192/646 (29%), Gaps = 143/646 (22%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-G 104
           D +   V    L   L +  V  + HN  ++  V+       + +  +  T++L+    G
Sbjct: 392 DILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA---GLTVTAFDDTMLLSYVLDG 448

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                     A         +  ++    C    ++  +DR              Y   D
Sbjct: 449 ASHGHGMDELAKLHLDHDTIKFADV----CGTGKNQITFDR------VPLDKALAYAAED 498

Query: 165 VTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             +T  +   L+             + E+ L  +   +   G  VD      L+      
Sbjct: 499 ADITLRLHGALKARLLAERMVTVYETLERPLVPVIVAMEAAGIKVDRTALMALSAEFGGR 558

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL- 269
             +L+ ++++L  G   +    ++L   LF    L     T+T    T    L       
Sbjct: 559 MAELEVQIQNLA-GREFNVGSPQQLGKVLFENMSLPGGKKTKTGQWGTGADALEELAAQG 617

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +V + R                                 S+           Q  
Sbjct: 618 HDLPARVLDWRQL-------------------------------SKLKGTYTDALVAQIN 646

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384
           PR  R H      +T      +SDP+   I         +R   IA  G  L+ AD + I
Sbjct: 647 PRTGRVHTSFALALTTTGRLSSSDPNLQNIPIRSEEGRKIRHAFIAEPGHVLLSADYSQI 706

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A +A  +  ++AF  G D++  T A+ F V    +    R   K +   + Y   
Sbjct: 707 ELRLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYGIS 766

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A     +A   G++       +        + +     R   E   E A  + F+ T   
Sbjct: 767 AF---GLAQQLGISNGEAKSYIDAYFGR--YPE----IRDFMERTKEEARANGFVLTPFG 817

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R K        +   +     +A       G A    KR               ++ LP+
Sbjct: 818 R-KVFTPGIKDKNGAMRAFAERAAINGPIQGGAADIIKRA--------------MIRLPA 862

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                                                  A++ + L   ++         
Sbjct: 863 ---------------------------------------ALAAEGLKARLL--------- 874

Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
            L VHDE+V E P  + +   +++  +M S       +PL AE G+
Sbjct: 875 -LQVHDELVLEVPVAEQDATRAVVCRVMESAAQ--LDVPLVAEAGF 917


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/640 (17%), Positives = 195/640 (30%), Gaps = 146/640 (22%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + +      N+ ++R +L       +P+   +   +LA        L+       L +
Sbjct: 458 LASAEHPKALQNAKYDRLIL---LRHGLPLGGVVMDTLLADY------LRDAAAKHGLDA 508

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKP-----NHREAWRLFGEYCKGDVTVTREIFK-- 173
               +         +      L  + K                 YC  DV +TR +    
Sbjct: 509 MAERD------YGIQPTLFSDLVGKAKDGKASCFAEVEINQAALYCGMDVHLTRRLALDL 562

Query: 174 ---------RLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                    RL PL  + E  L  +   +   G  +D      L+  +     +L+ E +
Sbjct: 563 RQQLAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAALSTEMAQTLERLETEAK 622

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTC---QRVLSSNKKLTPQAIQVFN 278
               G+  +    ++L   LF   GL  +    T+T       VL   ++  P    V  
Sbjct: 623 Q-AAGMEFNLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLEQDHPVVPLVLE 681

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                                 S+         P        R H +
Sbjct: 682 HR-------------------------------TLSKLKSTYVDALPQLVEAETGRVHTD 710

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I      S  +R   +   G +L+ AD + IE R+L  ++
Sbjct: 711 FNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQAGWQLLSADYSQIELRILTHLS 770

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           GE+   +A+  G+D++  T      +    VT D+R +GK +   + Y  GA   Q+ A 
Sbjct: 771 GEEVLQQAYRDGDDVHALTARLL--LEKKAVTADERRLGKTINFGVIYGMGA---QRFAR 825

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            TG++       +  +   E +     F     E     A+   ++ T   R +      
Sbjct: 826 ETGVSQAQAKEFL--SKYKERYPKVFAFL----ELQERLALSRGYVETILGRRRP----- 874

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                                                   D+N L  +L         ++
Sbjct: 875 -------------------------------------FHFDRNGLGRLLGKD----PLEI 893

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
               +       Q  R            +Q  S DI+   M+    A         ++L 
Sbjct: 894 DLEVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALEQQSLPARLLLQ 947

Query: 628 VHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E  P   E    ++   M         +PL  E
Sbjct: 948 VHDELVLEVDPTALERVRQLVVTTMEQAIQ--LSVPLVVE 985


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/598 (14%), Positives = 180/598 (30%), Gaps = 86/598 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70
           D    G      D  ++  +F   ++         +      + +  +   +N     V 
Sbjct: 374 DTETTGTDP--MDAELVGMSFSITENQAFYVPVPAERKEAIKIVREFEPVFKNEKSLKVG 431

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127
            N  ++  VL+   N  I +   +   ++A     P     +  + E       +    +
Sbjct: 432 QNIKYDMLVLQ---NYGIEVRGKLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 486

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181
           ELI         +    +N  +          Y   D  VT ++   LE    K      
Sbjct: 487 ELIG-------PKGKGQKNMRDLSPQ--EVYLYACEDADVTLKLKNILEQELKKNDAEKL 537

Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   I   G  +D       ++        +++E+ +L  G   +    +
Sbjct: 538 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEG-EFNIASPK 596

Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++   LF +   +     T+T    T + VL S +       ++                
Sbjct: 597 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILE-------------- 642

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                            + G  +         P    P+  R H   +Q +T      +S
Sbjct: 643 -----------------YRGLKKLLSTYIDALPQLINPKTGRIHTSFNQTVTATGRLSSS 685

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I         +R   I  +G     AD + IE R++A ++ ++  + AF +G D
Sbjct: 686 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYD 745

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A+ + V   +VT D R   K     + Y         +A    ++      L+ 
Sbjct: 746 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 802

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                E +   +++     +   EH   +          K+     +SR + +     + 
Sbjct: 803 --GYFETYPQVKSYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 855

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584
                  G A    K     +    K +     ++L     L +      +  +    
Sbjct: 856 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVEQVV 913


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/637 (16%), Positives = 184/637 (28%), Gaps = 150/637 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  +  +  N  ++  +L A      PI   +  +  A   GL         + 
Sbjct: 412 LKPVLEDDAILKIGQNMKYDAKILAAHGITVAPIDDTML-MSYALHAGL-HGHGMDTLSE 469

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +  +      + L+                    R       +Y   D  +T  ++  L+
Sbjct: 470 RYLNHSPIPIRSLL----------GSGKAAVTFDRVPVAEAVKYAAEDADITLRLWLTLK 519

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P   +          E+ L  +   +   G  VD      ++     +   L+ E+ +L 
Sbjct: 520 PQLHRAQVTTVYETLERPLVPVLARMERDGVLVDRDTLRAMSGKFAQKMAGLESEIHALA 579

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L   LF E GL   +  +T    T   VL           +V + R  
Sbjct: 580 R-RSFNVGSPKQLGEILFDEMGLPGGEKGKTGAYATGADVLEDLATEHDLPARVLDWRQL 638

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          S+              P   R H    Q 
Sbjct: 639 -------------------------------SKLKSTYTDALQDHIDPDTGRVHTSYLQT 667

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                   +SDP+   I         +R   +A+ G +LV  D + IE R+LA +AG + 
Sbjct: 668 GASTGRFSSSDPNLQNIPVRSEEGRRIREAFVAAPGNRLVSLDYSQIELRILAHVAGIET 727

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  G D++  T +  FNV  A++T + R   K +   + Y        +       
Sbjct: 728 LKQAFRDGHDIHAMTASEMFNVPLAEMTPEIRRQAKAINFGVIYGISGFGLARNLRI--- 784

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                              +A+ F     E  P   I+D    T        + ++H  V
Sbjct: 785 ----------------PRGEAQGFIDRYFERFP--GIKDYMDATTA------FAKEHGYV 820

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             L+       E   +  +A  AR                                   R
Sbjct: 821 QTLFGRKIHTPEIAAKGPRAGFAR-----------------------------------R 845

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIV 633
           + +N                    +Q  + DI+   M+            ++L VHDE++
Sbjct: 846 AAINAP------------------IQGTAADIIRRAMIRMPEAIEGLPCKMLLQVHDELI 887

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWA--KGLPLKAEG 667
            E  +        +   +M      A    +PL  + 
Sbjct: 888 FEVAEDSVDRLIDVARAVMQGAADPAVRLDVPLVVDA 924


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/598 (14%), Positives = 180/598 (30%), Gaps = 86/598 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVA 70
           D    G      D  ++  +F   ++         +      + +  +   +N     V 
Sbjct: 368 DTETTGTDP--MDAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEPVFKNEKSLKVG 425

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127
            N  ++  VL+   N  I +   +   ++A     P     +  + E       +    +
Sbjct: 426 QNIKYDMLVLQ---NYGIEVRGKLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 480

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181
           ELI         +    +N  +          Y   D  VT ++   LE    K      
Sbjct: 481 ELIG-------PKGKGQKNMRDLSPQ--EVYLYACEDADVTLKLKNILEQELKKNDAEKL 531

Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   I   G  +D       ++        +++E+ +L  G   +    +
Sbjct: 532 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEG-EFNIASPK 590

Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++   LF +   +     T+T    T + VL S +       ++                
Sbjct: 591 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILE-------------- 636

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                            + G  +         P    P+  R H   +Q +T      +S
Sbjct: 637 -----------------YRGLKKLLSTYIDALPQLINPKTGRIHTSFNQTVTATGRLSSS 679

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I         +R   I  +G     AD + IE R++A ++ ++  + AF +G D
Sbjct: 680 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYD 739

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A+ + V   +VT D R   K     + Y         +A    ++      L+ 
Sbjct: 740 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 796

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                E +   +++     +   EH   +          K+     +SR + +     + 
Sbjct: 797 --GYFETYPQVKSYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 849

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584
                  G A    K     +    K +     ++L     L +      +  +    
Sbjct: 850 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVEQVV 907


>gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 929

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/540 (18%), Positives = 187/540 (34%), Gaps = 84/540 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113
           L+   EN  +T V  N  ++  VL+   N  I +   +   ++A     P     +  + 
Sbjct: 406 LRPFFENEKITKVGQNLKYDLKVLQ---NYGIKVQGALFDTMIAHYLINPDMRHNMDLLS 462

Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           E  L  +   +E    LI    KG+    +          A     EY   D  VT ++ 
Sbjct: 463 ETYLGYTPIAIES---LIG---KGKAQRSMRT-------VALEEVKEYAVEDADVTWQLK 509

Query: 173 KR----LEPLSSK------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                 L  ++++      E  L  +   +   G  +DVA     ++ +D E  +L+  +
Sbjct: 510 DVFKAELPKVNAQKVYADLEMPLLKVLAVMEREGVTLDVAYLKEYSKTLDAEIAQLEATI 569

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVF 277
                G   +    ++L   LF +  +      T+T    T + VL+           + 
Sbjct: 570 AEQA-GTPFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                                  +         P +  PR  R H 
Sbjct: 629 EWRQ-------------------------------VQKLKSTYVDALPLEVNPRTGRVHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
              Q +       +++P+   I         VR   IA  +   L+ AD + IE R++A 
Sbjct: 658 TYMQTVAATGRLSSNNPNLQNIPIRTERGQRVRKAFIARNDDYILLSADYSQIELRIIAA 717

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ E   +++F  GED++  T A+ FNV    VT++QR+  K +   + Y   A     +
Sbjct: 718 LSEEHNMIESFLHGEDIHRATAAKVFNVPLEAVTREQRSHAKTVNFGIIYGVSAF---GL 774

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           ++ T L+ +    L+ T  A   + +  N+ +       EH   +  +G      ++   
Sbjct: 775 SAQTDLSRSQSKELIDTYYA--TYPNLRNYIQKQIHFAQEHGYVETVLGR-----RRYLP 827

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
             HSR   +     +        G A    K   + +  + + +     ++L     LV+
Sbjct: 828 DIHSRNQVVRGAAERNAVNAPIQGSAADIIKIAMIRIYDLLQAQQLQTRMLLQVHDELVF 887


>gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/552 (16%), Positives = 171/552 (30%), Gaps = 72/552 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAV 112
             LK  LEN  +  +  +  ++  V     N  I +  W    +LA     P+A      
Sbjct: 402 DTLKPILENPAIGKIGQHMKYDAHVFN---NHGISLAGWAFDTMLASYVLNPTATRHGMD 458

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A           +++  +  K  T   +                 Y   D  +T  ++
Sbjct: 459 DLAQYYLDYTTTTFEQIAGKGAKQLTFNQI----------ELEKAAPYAAEDADITWRLY 508

Query: 173 K----------RLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +          +LE L    E     +   + + G  +D+     L Q    +   L+  
Sbjct: 509 EYFAQALAKIPKLEKLLLEIEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESH 568

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
              L  G   +    ++L   LF + G+      + T     ++ + +  +         
Sbjct: 569 AIELA-GQPFNVSSPKQLGEILFDKLGIA---GGKKTASGQYATGEAILEKIDHPI---- 620

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                 +   L++   S+           Q+     R H    Q
Sbjct: 621 ----------------------IATILEYRSLSKLKSTYTDSLIAQSDSETQRVHTSYHQ 658

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            IT      ++DP+   I         +R   IA +G+ ++ AD + IE R++A  + ++
Sbjct: 659 AITATGRLSSTDPNLQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDE 718

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G D++  T A    +A   VT DQR   K +   L Y   A     +A    
Sbjct: 719 ALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAF---GLAKQLK 775

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+       +    +               EN    A E  ++ T   R +       + 
Sbjct: 776 LSRAEAQEYITLYFSRYP------SVHDYMENTRALAAEQGYVETVLGR-RLYMENIRAG 828

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            + +     +A       G A    K   +  V     K +  ++L     LV+    + 
Sbjct: 829 NAMVRQAAERAAINAPLQGSAADIIKLAMIS-VDQALPKEHAKMLLQVHDELVFEVDEDK 887

Query: 577 RSYLNTTTRQLT 588
              +    ++L 
Sbjct: 888 ADEVTALLKKLM 899



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YD 623
           L  R    N    N   RQ          L     Q  + DI+   M++  +A       
Sbjct: 816 LGRRLYMENIRAGNAMVRQAAERAAINAPL-----QGSAADIIKLAMISVDQALPKEHAK 870

Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLM 651
           ++L VHDE+V E  +       ++L  LM
Sbjct: 871 MLLQVHDELVFEVDEDKADEVTALLKKLM 899


>gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 903

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/624 (16%), Positives = 199/624 (31%), Gaps = 123/624 (19%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           + + + T   +++      L     L +P    +   +LA     PS  +          
Sbjct: 388 ISDPNQTKAVYDAKKTMVTLNR---LGLPCEGILFDFMLASYVLDPSQTIDDFASVASRY 444

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                E  EL+  F KG  +    +    +H     +     +  V  + E  ++LE + 
Sbjct: 445 DYTQVEADELV--FGKGAKYNVPDETKVADHLARKAVAIAKLEQTVNESLEKNEQLELVD 502

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           + E  L ++   +   G  VD      +   + V    ++  +  L  G   +    ++L
Sbjct: 503 NLELPLTFVLAKMEMEGVRVDTERLEEMKSEMAVRLQTIESSIHELA-GTTFNINSPKQL 561

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF   GL     T+T   T   VL S     P   ++   R    +     +  L++
Sbjct: 562 GVILFETLGLPPVKKTKTGYSTAADVLESLSGKHPIIDEILLYRQL-GKLQSTYVEGLLK 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
             +                               + S+ H   +Q +T      + DP+ 
Sbjct: 621 VTDK------------------------------KTSKVHTRFNQTLTQTGRLSSVDPNL 650

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF    D++ 
Sbjct: 651 QNIPIRLEEGRKIRQVFVPSHPGWKMFSADYSQVELRVLAHISQDENLVYAFRNDYDIHT 710

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+V+ A+V    R   K +   + Y        +     G+        +    
Sbjct: 711 KTAMDVFHVSEAEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKAAKDFIDRYF 767

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           A   + D + +   +  +  E    +                                  
Sbjct: 768 AS--YPDVKVYMEEIVRSAKEKGYVE---------------------------------- 791

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                   I  +RR +P +                R+   R     R+ +NT  +     
Sbjct: 792 -------TILHRRRYIPEITS--------------RNFNVRSF-AERTAMNTPIQ----- 824

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-H 649
               G   + I QA+   +L +  + + +    ++L VHDE++ E P+ +    + +   
Sbjct: 825 ----GSAADIIKQAM---LLMDERLESEQMEAKLLLQVHDELIFEAPEAEIAKLAEIVPD 877

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
           +M +    A  +PLK +      +
Sbjct: 878 VMENAV--ALSVPLKVDSAHGDSW 899


>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
 gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
          Length = 913

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 119/655 (18%), Positives = 204/655 (31%), Gaps = 156/655 (23%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D PV+      D V+   LK  LE+ D   V  +  ++  VL         +     TL+
Sbjct: 377 DAPVQ---LPRDEVL-AKLKPWLESADHKKVGQHLKYDEQVLANYGIEMRGVE--HDTLL 430

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            +              AL+   +K  + +++  +  +                 A     
Sbjct: 431 ESYVLESHRTHDMDSLALRHLGEKTIKYEDVAGKGAQQ----------IGFDEVALDKAA 480

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207
           EY   D  +T  + + L P  + E+ L ++ + I              G  +D       
Sbjct: 481 EYAAEDADITLRLHQALYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQ 540

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263
           +  +     +L+ E   L  G   +    +++    F + GL +   T +    T + VL
Sbjct: 541 SSEIATRLIQLEGEAYELAGG-EFNLGSPKQIGQIFFEKLGLPVIKKTPSGAPSTDEEVL 599

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               +  P    +  +R                               G S+        
Sbjct: 600 QKLAEDYPLPKVLLEHR-------------------------------GLSKLKSTYTDK 628

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
            P     +  R H    Q +       ++DP+   I         +R   IA  G KLV 
Sbjct: 629 LPRMVNRQTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  ++AF  GED++  T +  FNV P +V+ DQR + KV+   
Sbjct: 689 ADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINFG 748

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y   A     +AS  G+                                         
Sbjct: 749 LIYGMSAF---GLASNLGITR--------------------------------------- 766

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +  K    +  +R   +   + +        G       RR              
Sbjct: 767 -----DAAKMYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGRR-------------- 807

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            L LP              +  N   RQ               +Q  + D++   M+   
Sbjct: 808 -LWLP------------EINGGNGPRRQAAERAA-----INAPMQGTAADLIKMSMIAVQ 849

Query: 619 ------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                 K G  +++ VHDE++ E PD +       L  LM      A  +PL AE
Sbjct: 850 NWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVA--ALKVPLVAE 902


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/598 (14%), Positives = 180/598 (30%), Gaps = 86/598 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVA 70
           D    G      D  ++  +F   ++         +      + +  +   +N     V 
Sbjct: 374 DTETTGTDP--MDAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEPVFKNEKSLKVG 431

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127
            N  ++  VL+   N  I +   +   ++A     P     +  + E       +    +
Sbjct: 432 QNIKYDMLVLQ---NYGIEVRGKLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 486

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181
           ELI         +    +N  +          Y   D  VT ++   LE    K      
Sbjct: 487 ELIG-------PKGKGQKNMRDLSPQ--EVYLYACEDADVTLKLKNILEQELKKNDAEKL 537

Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   I   G  +D       ++        +++E+ +L  G   +    +
Sbjct: 538 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEG-EFNIASPK 596

Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++   LF +   +     T+T    T + VL S +       ++                
Sbjct: 597 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILE-------------- 642

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                            + G  +         P    P+  R H   +Q +T      +S
Sbjct: 643 -----------------YRGLKKLLSTYIDALPQLINPKTGRIHTSFNQTVTATGRLSSS 685

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I         +R   I  +G     AD + IE R++A ++ ++  + AF +G D
Sbjct: 686 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYD 745

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A+ + V   +VT D R   K     + Y         +A    ++      L+ 
Sbjct: 746 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 802

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                E +   +++     +   EH   +          K+     +SR + +     + 
Sbjct: 803 --GYFETYPQVKSYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 855

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584
                  G A    K     +    K +     ++L     L +      +  +    
Sbjct: 856 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVEQVV 913


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/640 (15%), Positives = 194/640 (30%), Gaps = 147/640 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL--ARSNGLPSALKAV 112
            +LK  L +  +  V  N  ++  +L+     DI +  +  T++L  A   G  S     
Sbjct: 411 DILKPVLLDPSILKVGQNLKYDLLILRE---RDIDVVGYDDTMLLSYAADCGFASLHGMD 467

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +    +    KE++    K +T                +    Y   D  VT  + 
Sbjct: 468 ELSKRHLGHEPIPYKEIVGTGKKQKTFG----------DVPIKDAYIYAAEDADVTLRLH 517

Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             L+             + ++ L  +   +   G  VD      L+          +  +
Sbjct: 518 TILKSRAIESQVYTVYETMDRPLVSVITDMERAGIKVDRDRLSALSGEFAQRMAAHEAAV 577

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRM 281
             +  G   +    +++   LF + GL     T+T        + + L     ++     
Sbjct: 578 HDIA-GERFNLASPKQIGDILFGKLGLPGGKKTKTGAWSTAADTLETLAADGAEIAQE-- 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                     L   G ++              P+  R H     
Sbjct: 635 -------------------------ILSHRGLAKLKGTYTDALSESIHPKTGRVHTSFSL 669

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      ++DP+   I         +R   I  +G  L+ AD + IE R+LA +A   
Sbjct: 670 ASTTTGRLSSNDPNLQNIPIRTEDGRKIREAFIPEDGNVLISADYSQIELRLLAHIAEIG 729

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF  G D++  T A  F V    +    R   K +   + Y   A     +A   G
Sbjct: 730 PLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAINFGIIYGISAF---GLARNLG 786

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +  +  +K       + +     +   +   E A    ++ T               
Sbjct: 787 IGRDEASLFIK------RYFERFPGIKAYMDETIEGARVHGYVET--------------- 825

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                                 +  +R   P +  K+         P+ R      +G  
Sbjct: 826 ----------------------LFGRRSHTPNIKAKQ---------PNIR------MGAE 848

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
           R  +N                    +Q  + DI+   M+         +    ++L VHD
Sbjct: 849 RQAINAP------------------IQGSAADIVKRAMIRVPAALAAHRLSAKMLLQVHD 890

Query: 631 EIVCETP-DTDEFNASMLYHLM--TSNPSWAKGLPLKAEG 667
           E+V E P D  +  A++L  +M   + P+ +  +PL  E 
Sbjct: 891 ELVVECPADQADETAAVLKDVMEGAAGPALSLSVPLVVEA 930


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/635 (15%), Positives = 204/635 (32%), Gaps = 146/635 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113
           LK  LE++ V  +  N  ++  V+K     DI I  +  T++L+ +     L   +  + 
Sbjct: 443 LKPILEDSSVLKIGQNIKYDWLVMKQY---DIIISSFDDTMLLSYAFDAGILTHNMDDLS 499

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E  +    K    K+L     K  +            +   +    Y      +T  +++
Sbjct: 500 E--RWLKHKPISYKDLTHNGKKITS----------FAQVDLKQATLYAAERADITLRLWQ 547

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P              ++ L  +   + +RG  +D  +   L+  +      L++E+ 
Sbjct: 548 VLKPQLVARGMTKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIY 607

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFN 278
                   +    ++L   LF + GL     T+    +T  + L            ++  
Sbjct: 608 KQAD-EKFNLASPKQLGDILFGKMGLSGGAKTKGGQWSTSAQTLEELAAEGHVLPRKIIE 666

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A                               +         P     +  R H  
Sbjct: 667 WRQLA-------------------------------KLKSTYTDALPSYIFSKTGRVHTN 695

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               IT      +S+P+   I         +R+  IA +G  L+ AD + IE R+LA +A
Sbjct: 696 YSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIA 755

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
             +   +AF  G D++  T ++ F VA   +  D R   K +   + Y   A     +A+
Sbjct: 756 DIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAF---GLAN 812

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                              R  + + ++
Sbjct: 813 QLGISRQEA-----------------------------------------GRYIQLYFER 831

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              + +                  I AR+   V  ++              GR + Y ++
Sbjct: 832 FPGIKDY------------MEKTKIFARENGYVETIF--------------GRRIHYPEI 865

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                 + +   +        G   + I +A+   I  E  +   K    ++L VHDE++
Sbjct: 866 KAKNVKIRSLNERAAINAPIQGSAADIIRRAM---IQMENALKEEKLSAKMLLQVHDELI 922

Query: 634 CETPDTDE-FNASMLYHLM--TSNPSWAKGLPLKA 665
            E P+ +     +++ ++M   + P  +  +PL+ 
Sbjct: 923 FEVPEEESKKTMAVVKNVMENATMPILSLSVPLEV 957


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/540 (18%), Positives = 177/540 (32%), Gaps = 80/540 (14%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D PV+      D V+   LK  LE+ D   V  +  ++  VL         I     TL+
Sbjct: 379 DAPVQ---LPRDEVL-AKLKPWLESRDKKKVGQHLKYDEQVLANYGITMDGIE--HDTLL 432

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            +              AL+    K  + +++  +       +  +D        A     
Sbjct: 433 QSYVLESHRPHDMDNLALRHLGLKTIKYEDVAGKGA----SQIGFD------EVALDKAS 482

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTL 207
           EY   D  +T  + + L P  + E  L ++            + +   G  +DV      
Sbjct: 483 EYAAEDADITLRLHQTLYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQ 542

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263
           +  +     +L+++   L  G   +    +++    F +  L +         +T + VL
Sbjct: 543 SNEIATRLVELERQAYDLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVL 601

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               +  P    +  +R                               G S+        
Sbjct: 602 QKLAEDYPLPKTILEHR-------------------------------GLSKLKSTYTDK 630

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
            P        R H    Q +       ++DP+   I         +R   IA  G KLV 
Sbjct: 631 LPRMVNASTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 690

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  L+AF+ GED++  T +  F+V P +V+ DQR I KV+   
Sbjct: 691 ADYSQIELRIMAHISGDEALLRAFKQGEDIHRATASEVFSVTPLEVSNDQRRIAKVINFG 750

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y   +     +AS  G+  +     +    A               EN    A    +
Sbjct: 751 LIYGMSSF---GLASNLGITRDAAKLYIDRYFARYP------GVAAYMENTRTSAKMKGY 801

Query: 499 IGTACERVKKAW-RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
           + T   R  + W  + +           +A       G A    K   + +    ++   
Sbjct: 802 VETVFGR--RLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWIEESGI 859



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 18/109 (16%)

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619
           GR L         +  N   RQ               +Q  + D++   M+   K     
Sbjct: 807 GRRLWLP----EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVQKWIEES 857

Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                +++ VHDE+V E PD +  +    L  LM         +PL AE
Sbjct: 858 GIRTRMIMQVHDELVLEVPDDELSDVRKRLPELMCGVAQ--LKVPLVAE 904


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 354 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 403

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 404 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 461

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 462 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 511

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 512 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 571

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 572 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 629

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 630 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 659

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 660 AVAVTGRLASNDPNLQNIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 719

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 720 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 776

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 777 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 829

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 830 NGPRRQAAERAAINAPMQGTA 850


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 111/650 (17%), Positives = 202/650 (31%), Gaps = 146/650 (22%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
            V+ + L   L +        N+ ++R +L       + +   +   +LA        L+
Sbjct: 448 EVVLEQLAPWLSSPSHPKALQNAKYDRLIL---LRHGLVLGGVVMDTLLADY------LR 498

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----RLFGEYCKGDV 165
                  L       G               L  + K      +          YC  DV
Sbjct: 499 DAAAKHSLD------GMAERDYGITPTLFSDLVGKAKDGKASCFAEVPSDQAALYCAMDV 552

Query: 166 TVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
            +TR +             +    L   E  L  +   +   G  +D++   TL++ +  
Sbjct: 553 HLTRRLAIDLRQQLQASGEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKEMGE 612

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTC---QRVLSSNKK 268
             T+L+ + +    G+  +    ++L   LF   GL  +    T+T       VL     
Sbjct: 613 TLTRLEADAKQ-AAGVDFNLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLAD 671

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    V  +R+                                S+         P   
Sbjct: 672 DHPVVPLVLEHRVL-------------------------------SKLKSTYVDALPQLV 700

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383
                R H + +Q +T      +S+P+   I      S  +R   +  E   L+ AD + 
Sbjct: 701 EAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEHWTLLSADYSQ 760

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+L  ++GE+   +A+  G+D++  T      +    V+ D+R +GK +   + Y  
Sbjct: 761 IELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDDVSADERRLGKTINFGVIYGM 818

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
           GA   Q+ A  TG++       +  +   E +     F     E     A+   ++ T  
Sbjct: 819 GA---QRFARETGVSQTDAKEFL--SKYRERYPKVFAFL----ELQERLALSRGYVET-- 867

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                                             I+ R+R          D+N L  +L 
Sbjct: 868 ----------------------------------IMGRRRP------FHFDRNGLGRLLG 887

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-- 621
                   ++  + +       Q  R            +Q  S DI+   M+    A   
Sbjct: 888 KD----PFEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQ 937

Query: 622 ----YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                 ++L VHDE+V E  P   +   +++   M         +PL AE
Sbjct: 938 HSLPARLLLQVHDELVLEVEPSALDDVKALVVSTMEKAVE--LSVPLVAE 985


>gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168]
 gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/625 (16%), Positives = 194/625 (31%), Gaps = 156/625 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAV 112
            L+        T+  HN  F+  VL++   L  P  R   T+V A       +   L+A+
Sbjct: 407 QLERLFSVPACTLAMHNGKFDYEVLRSN-GLAEPRCRIADTMVAAWLLDPDRSAYSLEAL 465

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                      + G E I           +  +              Y   D  +T +++
Sbjct: 466 AA--------DKLGLETIPY-------TDVVPKGSTFADIPLEQAVPYAAEDADLTWQLY 510

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +   P  +           E  +  +   +   G  ++ +   +  + +  E  ++ +E+
Sbjct: 511 RLFLPRLAAAKLGDLFWNLEMPVLPILAEMELDGIHIEKSELISYGEELTAEIERIRREI 570

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNN 279
             L  G   +    ++L+  LF E  L     T+T       VL +   L P   ++ + 
Sbjct: 571 YEL-VGHEFNVASTKQLQDVLFEERKLPPGKKTKTGYSTDTGVLETLAALDPVPRKILDY 629

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R++                               ++         P        R H   
Sbjct: 630 RLK-------------------------------TKLFSSYVDTLPLMVD-GNDRIHTSF 657

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q  T      + +P+   I         +R    A  G +L+ AD + IE  +LA ++G
Sbjct: 658 IQTGTATGRLSSREPNLQNIPVRDEDGRRIRLAFTAEPGCQLISADYSQIELVILAHLSG 717

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +     AF  G D++  T A  F V P  VT D R   K +   + Y   A    ++A  
Sbjct: 718 DPNLCAAFSGGTDVHRATAALIFGVQPDAVTPDMRRTAKTINFGVMYGMSAF---RLAGA 774

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+     A  +                                         +A+ + +
Sbjct: 775 LGIPRTQAAEFI-----------------------------------------EAYFKTY 793

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           + V    NE+  A +Q        I  +RR +  +                 S      G
Sbjct: 794 AGVRNFMNEMVNAAQQ--SGFVETIFGRRRYIRAI---------------NSSSKIEKSG 836

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
             R  +NT                   +Q  + DI+ + M++   A         ++L V
Sbjct: 837 AERVAVNTP------------------IQGSAADIVKKAMIDVAAALKKTGSPARLLLQV 878

Query: 629 HDEIVCETP-DTDEFNASMLYHLMT 652
           HDE++ E P ++    AS++   M 
Sbjct: 879 HDELILECPQESAAETASLIKQTME 903


>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
 gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
          Length = 932

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/637 (15%), Positives = 179/637 (28%), Gaps = 150/637 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  +  N  ++  +L        PI   +     A   GL         + 
Sbjct: 410 LKPVLEDPAVLKIGQNMKYDAKILARNGITVAPIDDTMLLSY-ALHAGL-HGHGMDALSE 467

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +         K L+       T + +                +Y   D  +T  +++RL+
Sbjct: 468 RYLDHTPIPIKTLLGTGKSAITFDFV----------PIEEATKYAAEDAEITLRLWQRLK 517

Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E+ +  +   +  RG  VD      ++     +   L+ E+  L 
Sbjct: 518 PRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRMSNAFAQKMAGLEAEIHELA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +     +L   LF + G       ++    T   VL           +V + R  
Sbjct: 578 -GESFNVGSPAQLGEILFEKMGFEGGKTGKSGKYSTPADVLEDLATEHDLPRRVLDWRQL 636

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          S+              P   R H      
Sbjct: 637 -------------------------------SKLKSTYTDALQDHINPETGRVHTSYSIA 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
             +     ++DP+   I         +R   +A  G  LV  D + IE R+LA +AG   
Sbjct: 666 GANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGHVLVSLDYSQIELRILAHIAGIDA 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              AF  G D++  T +  F+V   ++T + R   K +   + Y         +A    +
Sbjct: 726 LKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGF---GLARNLRI 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                              +A+ F     E  P                           
Sbjct: 783 PR----------------AEAQAFIDTYFERFP--------------------------- 799

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                       +   +     A++ + V  ++ +K      +  P   +   +     R
Sbjct: 800 ----------GIRAYMDDTVAFAKEHKYVQTLFGRK------IHTPEIGAKGPQAGFAKR 843

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
           + +N                    +Q  + DI+   M+    A       ++L VHDE++
Sbjct: 844 AAINAP------------------IQGTAADIIRRAMVRMPAAIADLPARMLLQVHDELI 885

Query: 634 CETPDTDEFNAS-MLYHLM--TSNPSWAKGLPLKAEG 667
            E  +         +  +M   + P     +PL  + 
Sbjct: 886 FEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVDA 922


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 110/648 (16%), Positives = 206/648 (31%), Gaps = 143/648 (22%)

Query: 41  PVELWDCVHDPVM-----PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           P E      +  M        L   L +  ++  AHN+ +   ++    +    +     
Sbjct: 366 PAEFIGSASEGQMFAAEGHSGLAALLGDEKISKTAHNAKY---LMNLLLSAGQAVKGLDF 422

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKE-LIARFCKGETHECLYDRNKPNHRE-A 153
             ++A        L       +    ++ + +  L     K    E           +  
Sbjct: 423 DTMIAAHLLGEKNLAIKDLVFEHFGIEIADIENILTRNGKKASFSEVQLSEAAQLAADYT 482

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           +RL G +          +      +   E  L  +   +   G  +D  L   + +    
Sbjct: 483 FRLKGIFAAQ--LAETRLMDLFARV---EMPLLPILLGMERTGIMLDTDLLKAMAEKTGR 537

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLT 270
           +  KL++++ +   G   +    ++L   LF E  L +   T+T       VL   K   
Sbjct: 538 QIFKLEEDIYARA-GHNFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLEELKGKH 596

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                +   RM                                 +         P    P
Sbjct: 597 RIVDLILEYRML-------------------------------VKLKSTYLDTLPRMVNP 625

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
              R H   +Q  T      +S+P+   I         +R   IA  G  L+  D + I+
Sbjct: 626 HTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQID 685

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA ++ +   ++AF++ +D++  T AR  N+ P++VTK+QR + K +   + Y   +
Sbjct: 686 LRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPSKVTKEQRRLAKTVNFGVIYGMSS 745

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
              ++    T L+L                                            ++
Sbjct: 746 YGLEQ---ATELSLEEA-----------------------------------------DK 761

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             KA+ +K+ RV+  ++E+ Q      +     +  +RR +P +                
Sbjct: 762 FIKAYFEKYPRVAVYFSEIKQQVRT--QGYVETLLGRRRYIPEI---------------- 803

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619
                          N+  R + RE           VQ  S DI+   M+         K
Sbjct: 804 ---------------NSPNR-ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKLKEEK 846

Query: 620 AGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666
               ++L VHDE++ E P T+    + +L   M+     A  +PLK E
Sbjct: 847 LKSRLLLQVHDELIFEVPKTELGRMSDLLVETMSGAV--AFEIPLKVE 892


>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
 gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
          Length = 933

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/591 (16%), Positives = 177/591 (29%), Gaps = 86/591 (14%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   P +L            L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPAQL----ERRQALAQLAPLLT 415

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  +  +  ++  V++      I +  +    +L        +          +   
Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH---GIALAGYSDDTLLQSFVLNSGS----------ARHD 462

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
           M+   +    +   K E       +  P  + +      Y   D  +T  +   L P   
Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLA 522

Query: 180 ----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  L  +   I   G CVD A     +  +        Q+   L  G 
Sbjct: 523 AEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 582 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 629

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L++ G ++         P    P+  R H    Q    
Sbjct: 630 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 730

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 731 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
                +A       G A    KR  V +  ++     + +++L     LV+
Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVSVDAWIADHAEHALMILQVHDELVF 891


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/565 (17%), Positives = 188/565 (33%), Gaps = 92/565 (16%)

Query: 1   MATLFI--DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M    +  D ET S   L             ++  AF ++           +    Q L 
Sbjct: 365 MKQKSVCFDTETTSLNPLE----------AQLVGIAFSWEGGKGYYLPFEDNIEKTQQLI 414

Query: 59  EAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
           E L    E+ ++  +  N  ++  VL       I +       ++A     P        
Sbjct: 415 ELLRPFFESPEIEKIGQNLKYDIKVLDKY---GIKVEGPTFDTMIAHYLINPDMRHNMDI 471

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A    +   +   ELI +  K +       R+ P   +      EY   D  +T ++ +
Sbjct: 472 LAETYLNYTPQPISELIGKKGKNQKS----MRDVPLAEQ-----TEYAAEDADITFQLKE 522

Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             E            +  E  L  +   +   G  +D+     L++ +D +  +L+ ++ 
Sbjct: 523 FFEKELDEAKTRKLFNEIEMPLVEVLADMEIEGINLDLDFLKKLSEALDRDIKELEAKIY 582

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
               G        ++L   LF +  L      T+T    T + VLS           V  
Sbjct: 583 E-AAGEEFKISSPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHEIVQHVL- 640

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          + G  +         P Q      R H +
Sbjct: 641 ------------------------------DYRGLVKLQNTYVDALPGQVEKSSGRVHTD 670

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392
             Q I       +++P+   I         VR   I  S+   L+ AD + IE R++A +
Sbjct: 671 YVQTIAATGRLSSNNPNLQNIPIRTERGRQVRKAFIPRSDDYVLLAADYSQIELRIIAAL 730

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + E+  +KAF+ GED++ +T ++ FNV   +VT++QR+  K +   + Y   A     ++
Sbjct: 731 SEEETMIKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLS 787

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           + T L+ +    L+ T    + +    N+         EH      +G      ++  + 
Sbjct: 788 NQTSLSRSESKELIDTYY--KTYPKLSNYIADQVAYAREHGYVSTILGR-----RRYLKD 840

Query: 513 KHSRVSELWNELHQAFEQTIENGKA 537
            +S+ + +     +        G A
Sbjct: 841 INSQNAVVRGAAERNAVNAPIQGSA 865



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET--PDTDEFNASMLY 648
                +Q  + DI+   M+N        K    ++L VHDE+V +   P+ D+    ++ 
Sbjct: 856 AVNAPIQGSAADIIKIAMINIHKKLGEEKLQTKMLLQVHDELVFDVYKPELDQVK-KLIK 914

Query: 649 HLMTSNPSWAKGLPLKAE 666
             M +  ++   +PL  +
Sbjct: 915 SEMEN--AYQLNVPLDVD 930


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 115/698 (16%), Positives = 209/698 (29%), Gaps = 164/698 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID    +  D     +        ++  +F  +          H  P +P+ L       
Sbjct: 336 IDAAALTAFDTETTALDP--MTARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVLA 393

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +  LE+ D   V  +  ++  VL         I     TL+ +              A
Sbjct: 394 RLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLA 451

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+    K  + +++  +  K    + +       +                +T ++ + L
Sbjct: 452 LRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD----------ITLQLHQAL 501

Query: 176 EPLSSKE--QELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P  ++E   E  Y D  +            G  +D AL    +  +     +L+ +   
Sbjct: 502 YPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYE 561

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    +++    F +  L +         +T + VL    +  P    +  +R
Sbjct: 562 LAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR 620

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P    P   R H    
Sbjct: 621 -------------------------------GLSKLKSTYTDKLPRMVNPATGRVHTNYA 649

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       ++DP+   I         +R   IAS G ++V AD + IE R++A ++G+
Sbjct: 650 QAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS  
Sbjct: 710 ASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASNL 766

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+  +     +                                              ++ 
Sbjct: 767 GITRDAAKLYIDRYFT-----------------------------------------RYP 785

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V++   +   A +      + +  R+                 L LP            
Sbjct: 786 GVAQYMEDTRTAAKDK-GYVETVFGRR-----------------LWLP------------ 815

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
             +  N   RQ               +Q  + D++   M+         +    +++ VH
Sbjct: 816 EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVH 870

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E PD +       L  +M         +PL AE
Sbjct: 871 DELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAE 906


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 95/620 (15%), Positives = 179/620 (28%), Gaps = 140/620 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
           + LK  L +     +  N  F+R V     N  I +      TL+ +             
Sbjct: 381 EKLKPWLTDPSAPKLGQNLKFDRHV---FANHGIGLKGIVHDTLLQSYVFESHRPHDMDN 437

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    K     E+  +                  +       +Y   D  VT ++ +
Sbjct: 438 LALRHLGIKTITYDEVTGKGAA----------RIGFEQVDIERAAQYAAEDADVTLQLHQ 487

Query: 174 RLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L     K+ +L ++ +            +   G  +D+ L  T ++ +  +   L++  
Sbjct: 488 HLYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQSRELGEKMLALEERA 547

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFN 278
            ++  GL  +    ++++  LF    L +   T +      + VL       P A     
Sbjct: 548 CTIA-GLPFNLNSPKQIQEILFDRLKLPVMKKTPSGVPSTDEDVLQKLALDYPLA----- 601

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                     R  L + G ++         P    P   R H  
Sbjct: 602 --------------------------RALLDYRGLAKLKSTYTDKLPRMVHPVTGRVHTN 635

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       +++P+   I         +R   IA  G +++ AD + IE R++A ++
Sbjct: 636 YAQAVAVTGRLASNEPNLQNIPIRTAEGRRIREAFIAPSGYRIISADYSQIELRIMAHIS 695

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   LKAF  GED++  T +  F V    V  +QR   K++   L Y         +A+
Sbjct: 696 QDAGLLKAFAQGEDIHRATGSEIFGVPLETVNSEQRRYAKIINFGLIYGMSEF---GLAT 752

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        +        +    ++ +  ++   E+   +   G           + 
Sbjct: 753 QLGIERAAARTYMD--RYFSRYPGVADYMQRTRKTARENRYVETVFGRRL-----WLSEI 805

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +S          +A       G A    K   +                           
Sbjct: 806 NSSNGMRRQAAERAAINAPMQGTAADIIKLAMI--------------------------- 838

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                          R +    KL                            + VHDE+V
Sbjct: 839 ---------EVHDWLRRHELRSKLV---------------------------MQVHDELV 862

Query: 634 CETPDTDEFNAS-MLYHLMT 652
            E P+ +       L  LM 
Sbjct: 863 LEVPENEIETIKRELPLLMG 882


>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS]
          Length = 904

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 117/659 (17%), Positives = 199/659 (30%), Gaps = 161/659 (24%)

Query: 41  PVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI- 94
           PV          +P+      L+  LE+     + H++ ++  V     N  + +     
Sbjct: 363 PVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHV---FANEGVSLAGVAE 419

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            T++ A        +     A +   +     ++L  +  K                 A 
Sbjct: 420 DTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQ----------IGFDEVAV 469

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALA 204
            L G Y   D   T ++ + L P  ++          E ++  +   +   G  VD    
Sbjct: 470 PLAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQEL 529

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQ 260
              +  +  E   L+Q    L  G   +    ++L   LF   GL +   T     +T +
Sbjct: 530 GRQSHKLGQEMLALEQRAYELA-GQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDE 588

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VLS   +  P    +   R                               G S+     
Sbjct: 589 EVLSKLAQDYPLPQVLLEYR-------------------------------GLSKLKSTY 617

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375
               P    P   R H    Q         +SDP+   I         VR   IA +G K
Sbjct: 618 TDKLPRMISPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-K 676

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++ +    +AF  GED++  T +  F V  A+V  +QR   K +
Sbjct: 677 LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAI 736

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y  G      +AS  G+  +     +                    ++    A +
Sbjct: 737 NFGLIYGMGVF---GLASNLGITRDAAQAYIDRYFTRYP------GVARYMDDTRRLARD 787

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
             ++ T   R                                                  
Sbjct: 788 QGYVETVFGR-------------------------------------------------- 797

Query: 556 NNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
               L LP  R+    R  G  R+ +N                     Q  + D++   M
Sbjct: 798 ---RLQLPDIRAASGPRRQGAERAAINAPM------------------QGTAADLIKMAM 836

Query: 615 ------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                 ++A +    +++ VHDE+V E PD +    A  L  LM    +    +PL AE
Sbjct: 837 VAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVAT--LRVPLVAE 893


>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 933

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/591 (16%), Positives = 179/591 (30%), Gaps = 86/591 (14%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   P +L D          L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQL-DRTQALA---QLAPLLT 415

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  +  +  ++  V++      + +  +    +L        +          +   
Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH---GVALAGYADDTLLESFVLNSGS----------ARHD 462

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           M+   +    +   K E       +  P  + +      Y   D  +T  + + L P  +
Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLA 522

Query: 181 KEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E +L  +              I   G CVD A     +  +        Q+   L  G 
Sbjct: 523 SEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 582 SFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 629

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L++ G ++         P    P+  R H    Q    
Sbjct: 630 -------------------RVILEYRGLAKLRSTYTDKLPEMVHPQSGRVHTSYHQAGAA 670

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 730

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 731 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
                +A       G A    KR  V +  ++        ++L     LV+
Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVNVDGWIANHAQRAKMILQVHDELVF 891


>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 976

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 112/693 (16%), Positives = 201/693 (29%), Gaps = 168/693 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVMPQ-------- 55
           +D ET S   L          D  ++   F   +   +L      H     +        
Sbjct: 385 LDTETNSLNPL----------DAELVGIGFCLGEEINDLFYIPLSHQSQKKEMNQLAIED 434

Query: 56  ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
               L+  +E+ +      N  F+R +    +N  + +       +LA            
Sbjct: 435 VFFNLRSWIESPEKEKTLQNCKFDRQI---FYNHGLNLRGVTFDTLLADYILNNQ----- 486

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E   LS     E         K  T +    +NK            YC  DV +T +I 
Sbjct: 487 -EKHGLSEISFREF------GFKPPTFKETVGKNKDFSFVDINDASTYCGYDVLLTFKIA 539

Query: 173 KRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           K  +                 E  L  +   +   G  +D    + L+  +      +++
Sbjct: 540 KIFKERFNNENKDLTKLFKEIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTLENIEE 599

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQ 275
            +  +      +    ++L   LF +  L  +   +T     T   VL    +       
Sbjct: 600 NVFEIAK-QEFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPF 658

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R                                 S+         P     +  R 
Sbjct: 659 LIKHR-------------------------------TLSKLLSTYIDALPNLISEKTGRV 687

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H   +Q  T      +S+P+   I      S  +R   +  +G KL+ AD + IE R+LA
Sbjct: 688 HTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYSQIELRILA 747

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +A E+  + AF   +D++  T    F      +  D+R +GK +   + Y  G    +K
Sbjct: 748 HLANEEILINAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFGVIYGMG---IKK 802

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            A +TG++       +      E +     F     E     A+   ++ T   R ++  
Sbjct: 803 FARSTGVSTTEAKEFL--IKYKERYAKIFKFL----EFQERLALSKGYVETIFGRKRE-- 854

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                                                    K DKN L  ++        
Sbjct: 855 ----------------------------------------FKFDKNGLGRLIGKDPY--- 871

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAGYD---- 623
                         +   +       L       +Q  S DI+   M+   K   +    
Sbjct: 872 ----------EIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLEMNIP 921

Query: 624 --IVLTVHDEIVCET-PDTDEFNASMLYHLMTS 653
             ++L VHDE++ E  PD  E    ++   M  
Sbjct: 922 VKMLLQVHDELLFEVQPDFLEITKDLVKETMED 954


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/633 (16%), Positives = 200/633 (31%), Gaps = 147/633 (23%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           + ++   + + L+  LE+ +      N+ F+R +L+   +  I +   +   +LA     
Sbjct: 425 EMLNIEQVLEALRPILESEEYPKTLQNAKFDRLILR---SQGITLKGVVFDTMLASYIIN 481

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
           P +      +  L+   +    +L       +++  L  + K            YC  DV
Sbjct: 482 PES------SHNLTDLSLRYLPDL---GIVAQSYSQLVPKGKTIADLDINTVANYCGLDV 532

Query: 166 TVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             T +I ++++ +              EQ L  +   +  +G  +D    + L+Q +   
Sbjct: 533 FTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGET 592

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKL 269
              L++       G V +    ++L   LF    L  +   +T     T   VL   K  
Sbjct: 593 LDNLEKTSHQ-AAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHD 651

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P                                +   L++   S+         P    
Sbjct: 652 HPV-------------------------------INSILEYRTLSKLKSTYVDALPELVR 680

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384
               R H + +Q IT      +S P+   I      S  +R   I   G  LV AD + I
Sbjct: 681 SDTGRIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQI 740

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E+  ++A+ T +D++  T    F+     +T ++R +GK++   + Y  G
Sbjct: 741 ELRILAHLSQEKVLIEAYNTNQDVHSLTAKLLFDR--DGITPEERRLGKIINFGVIYGMG 798

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A   Q+ A   G++       +        +           E+    AI   ++ T   
Sbjct: 799 A---QRFAREVGVSATAGKQFID------RFNSQYPGVFEYLESQKLAAINQGYVETILG 849

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R +                                          Y +  K         
Sbjct: 850 RRR------------------------------------------YFEGLKG------RD 861

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KA 620
              L Y+D    R+  N   +                    S DI+   M+         
Sbjct: 862 RDRLNYQDEQMLRAAANAPIQ------------------GSSADIIKIAMIKLAEILKNY 903

Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMT 652
              ++L VHDE+V E P ++       +   M 
Sbjct: 904 QARLLLQVHDELVFEVPLSEWEELEYQIKSTME 936


>gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44]
 gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44]
          Length = 937

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 110/680 (16%), Positives = 206/680 (30%), Gaps = 166/680 (24%)

Query: 28  VCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENTDVTIVAHNSYFER 77
             ++  +F             H    +P+ L         K  LE+     +  +  +++
Sbjct: 377 ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDMDMVLARLKPWLEDAGKKKLGQHVKYDQ 436

Query: 78  TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
            V     N  I +  +   T++ +              AL+  S+     ++L    C  
Sbjct: 437 HV---FANHGITVRGYAHDTMLQSYVLEADRPHNLTSLALRHVSRSGISYEDL----CGK 489

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ------ 190
             ++       P  + +      Y   D   T ++   L P       L ++ +      
Sbjct: 490 GKNQI------PFAQVSVDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYELEMQTS 543

Query: 191 ----TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                I   G  +D       +  +     KL++E   +  G   +    ++L    F +
Sbjct: 544 EALFRIERNGVSIDAGELARQSNDLGARILKLEEEAYEIA-GQPFNLSSPKQLGEIFFDK 602

Query: 247 TGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            G+ +   T T    T + VL    +  P   ++  +R                      
Sbjct: 603 LGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRSL-------------------- 642

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                      S+             LP   R H    Q +       ++DP+   I   
Sbjct: 643 -----------SKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRLSSNDPNLQNIPVR 691

Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 VR   +A EGK +  AD + IE R++A ++G++  L AF+ G D++  T A  F
Sbjct: 692 TPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVF 751

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V+  +V+ +QR   KV+   L Y   +     +A   G+     A  +           
Sbjct: 752 GVSVDEVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAAAAYID---------- 798

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                             +   R   +   + Q  E     G  
Sbjct: 799 ----------------------------------KYFQRYPGVKRYMDQTVELAHAQGYV 824

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGK 596
                RR               L+LP        R     R+ +N               
Sbjct: 825 ETVFGRR---------------LVLPEINGGNGPRKKAAERAAINAPM------------ 857

Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649
                 Q  + D++ + M+         K    +++ VHDE+V E P++  ++  + +  
Sbjct: 858 ------QGTAADLIKKAMVAVQARLDTEKPEVLVIMQVHDELVFELPESARDWVQAEIPA 911

Query: 650 LMTSNPSWAKGLPLKAE-GY 668
           +M         +PL AE G+
Sbjct: 912 IMAGVAD--LSVPLLAEIGF 929


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/568 (14%), Positives = 168/568 (29%), Gaps = 82/568 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----LKEALENTDVTIVA 70
           D    G           +        P E W    +          ++    +  +  + 
Sbjct: 393 DTETTGFDI----FNDRIVGLSLAVRPYEAWYIPFNESNTAEYAALIRPLFADGKIAKIG 448

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            N  F+  VL     ++I   R   T++L       S       A++  + +      LI
Sbjct: 449 QNIKFDLMVLAR-LGVEIR-GRLYDTMILHYLLDPESRHNMDALAMRYLNYRPISITSLI 506

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LSS 180
            +            R       +     EY   D  VT  + + L P             
Sbjct: 507 GKGA----------RQLTMDMISLERVAEYAAEDADVTLRLKQVLWPKVEELDLAGLYLE 556

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E+ +  +   I   G  +D          ++     L+ ++  L      +     +L 
Sbjct: 557 IEEPMIAVLAEIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRRLADEPSLNVNSARQLG 616

Query: 241 TWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
             LF +  +     +T+T    T +  L +         ++   R               
Sbjct: 617 EVLFGKLRIAEKPKMTKTKQFSTEEEYLQTFAHKYEIVDKILEYR--------------- 661

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                           G  +         P    P   + H   +Q +T      +++P+
Sbjct: 662 ----------------GVKKLLSTYVEALPLLVNPVTGKIHTSFNQAVTATGRLSSTNPN 705

Query: 356 PLQI-----ISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I     +   +R   I S+    L+ AD + +E R++A ++G++  + AFE GED++
Sbjct: 706 LQNIPVRDELGRRIRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLIAAFEHGEDVH 765

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T AR F    A+V  D+R   K     + Y   A    +      +       +++  
Sbjct: 766 AATAARLFGKEVAEVDSDERRKAKTANFGIIYGISAFGLSQ---RLDIPRKEAKEIIEGY 822

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
            A           +   +   E A  D ++ T   R ++      SR +       +   
Sbjct: 823 FASYPK------VKEYMDRVVEEAKRDGYVSTIFGR-RRYLNDIASRNAVARGLAERNAV 875

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNN 557
                G A    K   + +    +++  
Sbjct: 876 NAPIQGSAADIMKIAMIRVSRRFREEGI 903


>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
 gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
          Length = 924

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/610 (16%), Positives = 176/610 (28%), Gaps = 90/610 (14%)

Query: 12  SPIDLTKCGICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLKE 59
             +D    G+                    +    H V+L D +  P MP     ++L+ 
Sbjct: 344 CAVDTETDGLDPLTAPLVGISLAPQCGRACYIPLGHQVDLMDSLGTPQMPVGTALEILEP 403

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
              +  V  V  N+ F+  VL    ++         T++++ +       + + E  +L+
Sbjct: 404 LFADPSVLKVFQNAKFDLLVLTQAGSVQ--PAPIDDTMLISYAQSAGQHGQGMDELSRLT 461

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLEP- 177
                                    RN+    +        Y   D  VT  +++ L P 
Sbjct: 462 LDHSPI----------PYDEVTGTGRNRVVFSQVDIARATPYAAEDADVTLRLWQVLRPR 511

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E+ L  +   +   G  VD      ++         ++ E+  L  G
Sbjct: 512 LRTSRALALYEEMERPLIPILADMERAGIAVDADDLRAMSIEFAQRMGVIEAEIHKLA-G 570

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRA 283
              +    ++L   LF E GL     T+     T   VL            ++   R  A
Sbjct: 571 REFNVGSPKQLGEILFDEMGLPGGKRTKAGAWGTDSSVLQDLADQGHDLPARILAWRQLA 630

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                          +           Q  P   R H      +
Sbjct: 631 -------------------------------KLKSTYADALLNQINPATGRVHTSFQMAV 659

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      ++DP+   I         +R   +A+ G  LV AD + IE R+LA +A     
Sbjct: 660 TTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGHLLVSADYSQIELRLLADVANIPAL 719

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF  G+D++  T +  F +    +    R   K +   + Y   A     +    G+ 
Sbjct: 720 REAFALGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAF---GLGRQLGIP 776

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKHSRV 517
                  +    A           R   E     A    ++ T   R  + W      + 
Sbjct: 777 PGEARGYIDAYFARYP------GIRDYMERVKAEARAKGYVTTPFGR--RCWVPGIADKS 828

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNN 576
           +   N   +        G A    KR  V +     D   +  ++L     LV+    ++
Sbjct: 829 AVRRNYAERQAINAPLQGGAADIIKRAMVRIPAALSDAGLDGRMLLQVHDELVFEVRKDD 888

Query: 577 RSYLNTTTRQ 586
              L    RQ
Sbjct: 889 ADRLAALVRQ 898


>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
 gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
          Length = 933

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/591 (16%), Positives = 178/591 (30%), Gaps = 86/591 (14%)

Query: 7   DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   P +L D          L   L 
Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQL-DRTQALA---QLAPLLT 415

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  +  +  ++  V++      + +  +    +L        +          +   
Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH---GVALAGYADDTLLESFVLNSGS----------ARHD 462

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           M+   +    +   K E       +  P  + +      Y   D  +T  + + L P  +
Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLA 522

Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E             L  +   I   G CVD A     +  +        Q+   L  G 
Sbjct: 523 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 582 SFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 629

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L++ G ++         P    P+  R H    Q    
Sbjct: 630 -------------------RVILEYRGLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 730

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 731 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
                +A       G A    KR  V +  ++        ++L     LV+
Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVNVDGWIANHAQRAKMILQVHDELVF 891


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 110/629 (17%), Positives = 203/629 (32%), Gaps = 148/629 (23%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
           + V+P  L+  LE+ +      N+ F+R +L+   +  I +   +   +LA     P + 
Sbjct: 416 EEVLPA-LRPILESENYPKTLQNAKFDRLILR---SQGITLKGVVFDTMLASYVINPES- 470

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                +  L+   +    +L       +++  L  + K            YC  DV  T 
Sbjct: 471 -----SHNLTDLSLRYLPDL---GIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTF 522

Query: 170 EIFKRL-------EPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +I +++        PL+      EQ L  +   +  +G  +D    + L++ +      L
Sbjct: 523 QITQKMQDILKDVPPLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSKQLGETLESL 582

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQA 273
           ++       G V +    ++L   LF    L  +   +T     T   VL   K   P  
Sbjct: 583 EKASHQ-AAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPV- 640

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
                                         +   L++   S+         P        
Sbjct: 641 ------------------------------INYILEYRTLSKLKSTYVDALPELVRSDTG 670

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H + +Q IT      +S P+   I      S  +R   I   G  LV AD + IE R+
Sbjct: 671 RIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRI 730

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ E+  ++A+ T +D++  T    F+    ++T D+R +GK++   + Y  G+   
Sbjct: 731 LAHLSQEKMLIEAYNTNQDVHSLTAQLLFDK--DEITADERRLGKIINFGVIYGMGS--- 785

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
           Q+ A   G++       +        +           E+    AI   ++ T   R   
Sbjct: 786 QRFAREVGVSATAGKQFID------RFNSQYPGVFEYLESQKLAAINQGYVETILGR--- 836

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                                      +++  R R                        L
Sbjct: 837 -----------------------RRYFESLKGRDR----------------------DRL 851

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDI 624
            Y+D    R+  N   +                    S DI+   M+            +
Sbjct: 852 NYQDEQMLRAAANAPIQ------------------GSSADIIKIAMIKLAEILKNYQARL 893

Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMT 652
           +L VHDE+V E P ++ E     +   M 
Sbjct: 894 LLQVHDELVFEVPLSEWEELQHQIKSTME 922


>gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1]
 gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1]
          Length = 937

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 109/680 (16%), Positives = 205/680 (30%), Gaps = 166/680 (24%)

Query: 28  VCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENTDVTIVAHNSYFER 77
             ++  +F             H    +P+ L         +  LE+     +  +  +++
Sbjct: 377 ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDLDKVLARLRPWLEDASRKKLGQHVKYDQ 436

Query: 78  TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
            V     N  I +  +   T++ +              AL+  ++     ++L    C  
Sbjct: 437 HV---FANHGITVRGYAHDTMLQSYVLEADRPHNLTSLALRHVNRSGISYEDL----CGK 489

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ------ 190
              +       P  +        Y   D   T ++   L P       L ++ +      
Sbjct: 490 GKSQI------PFAQVPVDKAAAYSCEDSDQTLDVHNTLWPRIQVHAGLLHIYELEMQTS 543

Query: 191 ----TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                I   G  +D       +  +     KL++E   +  G   +    ++L    F +
Sbjct: 544 EALFRIERNGVSIDAGELARQSNDLGARILKLEEEAYEIA-GQPFNLSSPKQLGEIFFDK 602

Query: 247 TGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            G+ +   T T    T + VL    +  P   ++  +R                      
Sbjct: 603 LGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRSL-------------------- 642

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                      S+             LP   R H    Q +       ++DP+   I   
Sbjct: 643 -----------SKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRLSSNDPNLQNIPVR 691

Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 VR   +A EGK +  AD + IE R++A ++G++  L AF+ G D++  T A  F
Sbjct: 692 TPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVF 751

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V+  +V+ +QR   KV+   L Y   +     +A   G+     A  +           
Sbjct: 752 GVSVDEVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAAAAYID---------- 798

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                             +   R   +   + Q  E     G  
Sbjct: 799 ----------------------------------KYFQRYPGVKRYMDQTVELAHAQGYV 824

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGK 596
                RR               L+LP        R     R+ +N               
Sbjct: 825 ETVFGRR---------------LVLPEINGGNGPRKKAAERAAINAPM------------ 857

Query: 597 LTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649
                 Q  + D++ + M      ++A K    +++ VHDE+V E P+   ++  + +  
Sbjct: 858 ------QGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAEIPA 911

Query: 650 LMTSNPSWAKGLPLKAE-GY 668
           +M         +PL AE G+
Sbjct: 912 IMAGVAD--LSVPLLAEIGF 929


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 109/698 (15%), Positives = 208/698 (29%), Gaps = 170/698 (24%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL---------- 61
             +D    G+   A +  ++ F+              H+  +     E L          
Sbjct: 384 CAVDTETDGLDPLAAN--IVGFSIATAPGKACYVPLKHEGTLEAPTGEQLAVDAALKLLA 441

Query: 62  ---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
              ++  V  + HN+ F+  +L     + +     +   +L              ++  L
Sbjct: 442 PLLQDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLISY----------SQSAGL 490

Query: 119 SSQKMEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             Q M+E   L         ++         P  +       +Y   D  VT  ++  L 
Sbjct: 491 HGQGMDELSNLHLNHTPITYDSVTGTGRNRVPFAQVPVETATKYAAEDADVTLRLWYVLH 550

Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E+ L  +   +   G  VD      L++  +     ++ ++    
Sbjct: 551 PTLRTNKALALYEQIERPLSVILADMEKAGIAVDRTELDRLSKDFEARMQGMENDIYE-A 609

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFNNRM 281
            G   +    ++L   LF E GL      +    +T   VL            ++   R 
Sbjct: 610 AGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQGHDLPARILAWRQ 669

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            A   +    + L+     D R+                               H     
Sbjct: 670 LAKLKSTYT-DALLRQAGRDDRV-------------------------------HTSFQM 697

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            IT      ++DP+   I         +R   IA  GKKL+ AD + IE R+LA +A   
Sbjct: 698 AITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPSGKKLISADYSQIELRLLADVANIP 757

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF+ G+D++  T +  FN+    +    R   K +   + Y   A     +    G
Sbjct: 758 ALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAF---GLGKQLG 814

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +        +                                                +R
Sbjct: 815 IPAGEARTYID--------------------------------------------AYFAR 830

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              + + + +  E+   +G                        ++ P GR      +   
Sbjct: 831 YPGIRDYMERMREEARTHG-----------------------YVLTPFGRRCYVPGIHEK 867

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM----MNATKAGY---DIVLTVH 629
            +          R+Y    +     +Q  + DI+   M    +   KAG+    ++L VH
Sbjct: 868 SAA--------RRQYAER-QAINAPLQGGAADIIKRAMVHLPLALQKAGFGATRMLLQVH 918

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE++ ET ++D E  A ++ ++M +    A  +PL  E
Sbjct: 919 DELLFETDESDAEAVAEIIKNVMEAAADLA--VPLVVE 954


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 110/698 (15%), Positives = 209/698 (29%), Gaps = 170/698 (24%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL---------- 61
             +D    G+   A +  ++ F+              H+  +     E L          
Sbjct: 352 CAVDTETDGLDPLAAN--IVGFSIATAPGKACYVPLKHEGTLEAPTGEQLAVDAALKLLA 409

Query: 62  ---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
              ++  V  + HN+ F+  +L     + +     +   +L              ++  L
Sbjct: 410 PLLQDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLISY----------SQSAGL 458

Query: 119 SSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             Q M+E     L       ++         P  +       +Y   D  VT  ++  L 
Sbjct: 459 HGQGMDELSAMHLSHTPISYDSVTGTGRNRLPFAQVPVATATKYAAEDADVTLRLWHVLH 518

Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E+ L  +   +   G  VD A    L++  +     ++ ++    
Sbjct: 519 PTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRLSKDFEARMQGMENDIYE-A 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFNNRM 281
            G   +    ++L   LF E GL      +    +T   VL            ++   R 
Sbjct: 578 AGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQGHDLPARILAWRQ 637

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            A   +                              R +G         R  R H     
Sbjct: 638 LAKLKSTYT-----------------------DALLRQAG---------RNDRVHTSFQM 665

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            IT      ++DP+   I         +R   IA  GKKL+ AD + IE R+LA +A   
Sbjct: 666 AITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQIELRLLADVANIP 725

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF+ G+D++  T +  FN+    +    R   K +   + Y   A     +    G
Sbjct: 726 ALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAF---GLGKQLG 782

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +        +                                                +R
Sbjct: 783 IPAGEARTYID--------------------------------------------AYFAR 798

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              + + + +  E+   +G                        ++ P GR      +   
Sbjct: 799 YPGIRDYMERMREEARTHG-----------------------YVLTPFGRRCYVPGIHEK 835

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM----MNATKAGY---DIVLTVH 629
            +          R+Y    +     +Q  + DI+   M    +   KAG+    ++L VH
Sbjct: 836 SAA--------RRQYAER-QAINAPLQGGAADIIKRAMVHLPLALQKAGFGETRMLLQVH 886

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE++ ET +++ E  A+++ ++M +    A  +PL  E
Sbjct: 887 DELLFETDESEAEAVAAIIKNVMEAAADLA--VPLVVE 922


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 192/635 (30%), Gaps = 142/635 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
           LKE LE+  +  VA N  +   V+K      + +  +  T++++        A      A
Sbjct: 478 LKELLEDPSILKVAQNLKYGYLVMKRH---GVTMQGFDDTMLISYVLDAGNGAHGMESLA 534

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +         K +                +             Y   D  +   ++  L
Sbjct: 535 ERWLGHTPIASKGI----------TGSGRSSLTIDFVDIDKAAAYSAEDADIALRLWHVL 584

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P  +           E+ L  +   + +RG  VD  +   L+  +      L+ E+  L
Sbjct: 585 KPRLTARGLTRVYERLERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDEIYRL 644

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280
             G   +    ++L   LF + GL     T+T    T  +VL            ++ + R
Sbjct: 645 A-GETFTIGSPKQLGDILFGKLGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWR 703

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            ++         P    P   R H    
Sbjct: 704 QL-------------------------------TKLKSTYTDALPGFVHPETKRVHTCFA 732

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              T      +SDP+   I         +R+  +A+ G KLV AD + IE RVLA +A  
Sbjct: 733 LAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADI 792

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+  
Sbjct: 793 PQLRQAFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINFGIIYGISAF---GLANQL 849

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +  +                    + +   E  P                    R    
Sbjct: 850 SIERSEAGD----------------YIKRYFERFP------------------GIRDYME 875

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                       + +TI   +A     R                   PS R+       N
Sbjct: 876 NTKTF--ARENGYVETIFGRRAHYPDIRSSN----------------PSMRAF------N 911

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R+ +N   +         G   + I +A+ +    E  + A K    ++L VHDE++ E
Sbjct: 912 ERASINAPIQ---------GSAADIIRRAMVK---MEPALEAAKLSARMLLQVHDELIFE 959

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             + + E    ++  +M +    A  +  PLK + 
Sbjct: 960 VEEGEIERTIPVIVSVMENAAMPALDMRVPLKVDA 994


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 102/609 (16%), Positives = 189/609 (31%), Gaps = 100/609 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQ 55
           ID ET S             +     +        P E +          +     V+ +
Sbjct: 322 IDLETSS------------LDPFECDIAGISLSFKPKEAYYIPLHHRNAQNLDEKEVL-K 368

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
            LKE LE+    IV  N  F+  VL       +P        ++A     P         
Sbjct: 369 KLKEILEDPGAKIVGQNLKFDYKVLMVKGIEPVPP---HFDTMIAAYLIEPNEKKFNLDD 425

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    KM   +EL++ F          D               Y   D  +T  ++K
Sbjct: 426 LALKFLGYKMTSYQELMS-FSSPLFGFSFVD-------VPLEKAANYSCEDADITYRLYK 477

Query: 174 RLE-PLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L   L            E  L  +   +   G  VD      L++    +  +L +E+ 
Sbjct: 478 TLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIY 537

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFN 278
            +  G   +    +++   LF + G+     T  T        VL            +  
Sbjct: 538 RIA-GEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE 596

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          +    +         P    P+  R H  
Sbjct: 597 -------------------------------YRKIQKLKSTYIDALPKMVNPKTGRIHAS 625

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392
            +Q  T      +SDP+   +         +R  ++       +V AD + IE R+LA +
Sbjct: 626 FNQTGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHL 685

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L+AFE G D++  T +R FNV P +VT++ R  GK++  ++ Y           
Sbjct: 686 SGDENLLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV-- 743

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+ +     ++   +    +    ++ + +     E        G   +  +   R 
Sbjct: 744 -RLGVPVKEAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARD 800

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571
           ++++         +    T   G A    K   + +    K++     +++     LV+ 
Sbjct: 801 RNTQAEG-----ERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFE 855

Query: 572 DVGNNRSYL 580
                +  L
Sbjct: 856 VPNEEKDAL 864


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 98/582 (16%), Positives = 176/582 (30%), Gaps = 78/582 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D     +   A    ++  +F  +          H  P  P  L         K  LE+ 
Sbjct: 338 DTETTALD--AMQAELVGVSFALEPGRAAYVPLAHVYPGAPDQLDRDRVLARLKPLLEDP 395

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKM 123
               V  N  ++ +VL      DI +      TL+ +      +       A +      
Sbjct: 396 GRPKVGQNLKYDMSVLARY---DIALRGIAHDTLLESYVLDSTARHDLDSLAKRFLDHDT 452

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179
              +++  +  K    + +               G Y   D  VT  + +  +P      
Sbjct: 453 IRFEDVAGKGAKQIGFDQV----------PLEQAGPYAAEDAEVTLRLHRVFQPRLAAVP 502

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   +   G  +D A   T +  +  +  +L++    +  G   +
Sbjct: 503 ALERLYREIEMPLVPVLSRLERAGVLIDSARLATQSAELARKILELEESAYRVA-GRRFN 561

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               +++    F E GL +   T            +                        
Sbjct: 562 LGSPKQIGAIFFDELGLPVVAKTPKGAPSTSEDVLERLAAEGHELP-------------- 607

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                       R  L   G S+         P        R H    Q +T      +S
Sbjct: 608 ------------RIILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAVTATGRLSSS 655

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           DP+   I         +R   IA+ G +L+ AD + IE R++A ++G++  L AF  G+D
Sbjct: 656 DPNLQNIPIRTEEGRRIRRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQD 715

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A    +AP  VT +QR   K +   L Y   A     +A   G+        V 
Sbjct: 716 IHRATAAEILGLAPEDVTGEQRRSAKAINFGLIYGMSAF---GLARQLGIERGAAQEYVD 772

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                E +    +F    +    E    D ++ T   R        H   +        A
Sbjct: 773 --RYFERYPGVRDFMDRTRRQVRE----DGYVETLFGRRLHLPEIGHGNQARRAAAERTA 826

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
               ++   A I ++       +++ ++    L+L     LV
Sbjct: 827 INAPMQGTAADIIKRAMIAVDAWIEAEQPAARLILQVHDELV 868


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 107/677 (15%), Positives = 192/677 (28%), Gaps = 169/677 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFG--FDDHPVELWDCVHDP----VMPQVLK 58
            ID ET S                   L      +                    P  L+
Sbjct: 366 SIDTETTS------------LNTFEAELVGISICWKPGEAYFIHFTDKELSAKTFPGKLQ 413

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + LEN D+     N  ++  VLK   N  + +       +LA     P       E   L
Sbjct: 414 DVLENPDIKKTGQNLKYDILVLK---NHHVRLAPVGFDTMLASYVINPE------EKHNL 464

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   K L  R            +  P           Y   D  V  ++ ++ + L
Sbjct: 465 D---DLAKKHLNHRTITYSELTGTGKKAIPIREVPIDRLTVYACQDADVALQLEQKQKIL 521

Query: 179 SSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             +           E  L  +   +   G  +D A      + V+ +  +L + +   T 
Sbjct: 522 LGENSELEQLCVNIEFPLVEVLADMEYLGIALDTAQLERTAETVNRQLLELTERIYD-TA 580

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRAS 284
           G + +    ++L   LF   GL  +  T+T      +VL     + P A  +        
Sbjct: 581 GTIFNIDSPKQLGNVLFNVLGLPAKKTTKTGFSTNVQVLEDLSLIHPVAKDLLE------ 634

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                    +    +         P    P+  R H   +Q IT
Sbjct: 635 -------------------------YRSLQKLKTTYIDALPKILNPKTGRVHTSFNQHIT 669

Query: 345 HLPTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398
                 +S+P+   I     +   +R   I S   + L+ AD + IE R+ A ++ +   
Sbjct: 670 ATGRLSSSNPNLQNIPIRTPLGREIRKAFIPSTSDRYLLSADYSQIELRIAAEISQDSHL 729

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF   ED++  T    F+     +TKD R   K +   + Y         +A    ++
Sbjct: 730 IDAFRNREDIHTATAKTIFDT--DDITKDMRRKAKEVNFGVLYGIQPY---GLAQRLNIS 784

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 ++ T                                              S+  
Sbjct: 785 QKEAKAIIDTYI--------------------------------------------SKYP 800

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L++ L     +  E G       RR        +++N  +                 R+
Sbjct: 801 GLFSALQTTITEAAEKGYVTTLTGRRRYIENLRSRNRNIRMAA--------------ERA 846

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEI 632
            +NT                   +Q  + DI+   M      +   +    ++L VHDE+
Sbjct: 847 AMNTP------------------IQGTAADIIKCAMGLVSEAIKKKRMQSAMLLQVHDEL 888

Query: 633 VCETPDTDEFNASMLYH 649
           V ET + ++   + +  
Sbjct: 889 VFETTEEEKAALAEIAE 905


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
          Length = 1036

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 108/682 (15%), Positives = 205/682 (30%), Gaps = 158/682 (23%)

Query: 15   DLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQVLKEALENTDVTI 68
            D    G+        ++       DH    W      D   + ++ + +K    ++ +  
Sbjct: 472  DTETTGLD--VRSATIVGLGLAIRDH--HAWYIPFNSDLDKEEIL-KEIKPFFADSSLKF 526

Query: 69   VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEG 126
             A N+ F+  +L       I +       ++A     PS         +L   + +    
Sbjct: 527  FAQNAKFDLQMLH---YAGIEVKNIDFDTLVASFICNPSRQFHDLDSLSLHYLNYRKIST 583

Query: 127  KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--------- 177
            + LI +  K      +   + P           YC  DV +T  +   LE          
Sbjct: 584  ESLIGKGKK-----QISMADLPV-----ERVATYCCEDVDITLRLRNELEAELHRRDLRN 633

Query: 178  -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                 +  L  +   + + G  +++     ++     E  K ++++ +L  G   +    
Sbjct: 634  LFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFSAELKKCEEQIHALA-GHEFNINSP 692

Query: 237  EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            +++   LF E GL     T T         + L  ++  V                    
Sbjct: 693  KQVGVVLFEEMGLKAGKKTATGYSTSAEVLENLAAESEIV-------------------- 732

Query: 297  AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                    R  L+    S+         P +      R H    Q         ++ P+ 
Sbjct: 733  --------RAILRHRTLSKLISTYADALPKEVSELDQRIHTRFSQTTAATGRLASTQPNL 784

Query: 357  LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
              I         +RS   A EG   +  D + IE R++A ++ +   L+AF    D++  
Sbjct: 785  QNIPTRTAEGKSIRSAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLEAFNNDFDVHTH 844

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
            T +  F    ++VTK QR   K +   + +  G     K                     
Sbjct: 845  TASLVFETELSEVTKQQRYAAKAVNFGIMFGQGPYGLAKE-------------------- 884

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                       IG + +  K+       R  ++   + +  E  
Sbjct: 885  ---------------------------IGVSADEAKQFISNYFKRYPDVQKFMAKCVEDA 917

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
             + G +  +  RR             L  ML S         G  R  +N+         
Sbjct: 918  RDKGYSETSFGRRRY-----------LPEMLSSN---GRIRSGAERISVNSP-------- 955

Query: 592  TYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNA 644
                      +Q  + DI+   M+              ++L +HDE++ E PD + E   
Sbjct: 956  ----------IQGTAADIIKIAMIKVADELEKRQLKSKMLLQIHDELLFEVPDDELEIMK 1005

Query: 645  SMLYHLMTSNPSWAKGLPLKAE 666
             ++  +MT  P     +PLK +
Sbjct: 1006 ELIPQIMTDIPQ--IKVPLKVD 1025


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 121/683 (17%), Positives = 212/683 (31%), Gaps = 167/683 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57
              ID ET + +D       + AE   ++ F+  FD +        HD    P+ L    
Sbjct: 348 HFAIDTET-TNLD------YRVAE---LVGFSIAFDANEAYYVPLAHDYEGAPEQLSREQ 397

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
                K  LEN  V  + H+  ++  +     N  I I  W    +LA      +A    
Sbjct: 398 VLAQIKPILENEQVKKIGHHLKYDAHI---FANHGIIIQGWYFDTMLASYVLNAAATRHG 454

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A    S      +++  +  K +T   +             +   Y   D  VT  
Sbjct: 455 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------ELEVAAHYAAEDAHVTYR 504

Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++ L             L + E  +  +   + + G  +D      L+         L+
Sbjct: 505 LYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVEFSDTMQTLE 564

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +   L  G   +    +++   LF + G+      + T     S+++ +  +       
Sbjct: 565 NQATELA-GETFNIASPKQVGEVLFDKLGI---KGGKKTATGQYSTSESILEKIEHPLAE 620

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L+  G ++           Q+     R H   
Sbjct: 621 --------------------------VILEHRGLAKLKNTYTDRLVEQSHDATHRVHTSY 654

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +T      ++DP+   I     I   +R   IA EG+ L+ AD + IE R++A  + 
Sbjct: 655 HQALTATGRLSSTDPNLQNIPIRTPIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 714

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF+ G+D++  T A    +A   VT DQR   K +   L Y  G   F  +   
Sbjct: 715 DDALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY--GMSEF-GLTRQ 771

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G                   E++ ++     + +P        +    ER ++  R   
Sbjct: 772 LGFTR----------------EESRSYIARYFQRYP-------GVLDYMERTRQIAR--- 805

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      Q F +TI                                GR L   D+ 
Sbjct: 806 ----------EQGFVETIL-------------------------------GRRLYTPDI- 823

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
                 N   +Q          L     Q  + DI+   M+   K        ++L VHD
Sbjct: 824 ---LATNKMIKQAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQAKLLLQVHD 875

Query: 631 EIVCETP--DTDEFNASMLYHLM 651
           E+V E      DE +   +  +M
Sbjct: 876 ELVFEADVAIADELS-KQIADVM 897


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 121/699 (17%), Positives = 212/699 (30%), Gaps = 166/699 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID    +  D     +        ++  +F  +          H  P +P+ L       
Sbjct: 336 IDAAALTAFDTETTSLDP--MTARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDDVLA 393

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
             K  LE  D   V  +  ++  VL    N DI ++     TL+ +              
Sbjct: 394 RLKPWLEAADRKKVGQHLKYDAQVLA---NYDIALNGIEHDTLLESYVLESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K  + +++  +  K                 A      Y   D  +T ++   
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQ----------IGFDEVALDQAAAYAAEDADITLQLHHV 500

Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P  ++E  L  + + I              G  +D AL H  +  +     +L+ +  
Sbjct: 501 LYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEIATRLIELEGQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +         +T + VL    +  P    +  +
Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P    P   R H   
Sbjct: 620 R-------------------------------GLSKLKSTYTDKLPRMVNPATGRVHTNY 648

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       +++P+   I         +R   IAS G ++V AD + IE R++A ++G
Sbjct: 649 AQAVAVTGRLASNEPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISG 708

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS 
Sbjct: 709 DASLLRAFAHGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 765

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+  +     +    A                                          +
Sbjct: 766 LGITRDAAKLYIDRYFAR-----------------------------------------Y 784

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V++   +   A +      + +  R+                 L LP           
Sbjct: 785 PGVAQYMEDTRAAAKDQ-GYVETVFGRR-----------------LWLP----------- 815

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
              +  N   RQ               +Q  + D++   M+         +    +++ V
Sbjct: 816 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQV 869

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E PD +       L  +M         +PL AE
Sbjct: 870 HDELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAE 906


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 91/609 (14%), Positives = 182/609 (29%), Gaps = 94/609 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDP--VMPQVLKE 59
           L +D ET S   +          D  ++  +F   +            +    +  + K 
Sbjct: 353 LSLDTETTSTTAI----------DAELVGLSFAVKEKEAFYVAIPANREEALKIVNIFKP 402

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEAL 116
             EN ++  V  N  ++  VL    N  I I   +   +LA     P     +  + E  
Sbjct: 403 LYENPEILKVGQNIKYDYEVL---INYGIEIQGKMFDTMLAHYLIQPELYHNMDYLAEV- 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              + +    +ELI      +       R+            EY   D  +T  +   LE
Sbjct: 459 -FLNYQTIHIEELIG----PKGKNQKSMRDLAPSD-----IYEYAAEDADITLRLKNVLE 508

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               +          E  L  +   +   G C+D       ++ +     +++  +  L 
Sbjct: 509 SKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDTDTLKETSENLTNRLNEIEHHIYELA 568

Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            G   +     ++   LF +   +     T+T    T + VL   +  +P   ++     
Sbjct: 569 -GESFNIASPRQVGEILFGKMKIVEKPKKTKTGQYVTSEEVLQQLRSKSPIIDEIL---- 623

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                       + G  +         P     R    H   +Q
Sbjct: 624 ---------------------------NYRGLKKLLGTYIDALPKLINSRTGHIHASFNQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            IT      +SDP+   I         +R C I   G     AD + IE R++A ++ + 
Sbjct: 657 AITATGRLSSSDPNLQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDP 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF  G D++  T A+ ++    +VT  QR   K     + Y         +A    
Sbjct: 717 NMVEAFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIYGITTF---GLAQRMN 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +       ++      E++       +   E   E A E  +  T   R ++     +S+
Sbjct: 774 IENREAKQII------EDYFRTFPGVQAYMEKAKEMAREKGYAETLFHR-RRYLPDINSK 826

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGN 575
              +     +        G      K   + +    + +     +++     L +     
Sbjct: 827 NGTVRGFAERNAINAPIQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELNFSVYPE 886

Query: 576 NRSYLNTTT 584
            +  +    
Sbjct: 887 EKEKVEKIV 895


>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
 gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
          Length = 938

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 102/536 (19%), Positives = 176/536 (32%), Gaps = 83/536 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115
           L    ++ +   V  N+ ++  VL+   N  + +       +LA     P      +  A
Sbjct: 422 LTPYWQDRERPKVLQNAKYDWLVLR---NYGVALAGIAFDPMLASYVLDPEGKHNLMTLA 478

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---- 171
                  M   + L+              + +            YC  D  VT  +    
Sbjct: 479 QNHLQITMGSYEALVP-------------KGQTIDAVEIAAVSRYCGEDAAVTLRLVPVL 525

Query: 172 FKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             +L+            E  L  +   + +RG  +D A    L Q +D +   L+QE  +
Sbjct: 526 QAKLDEDPRLAGIFKEIEVPLEPVLARMEERGIRIDKAYLGELAQELDRDLESLEQEAYT 585

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNN 279
           L  G   +    ++L   LF + GL  +   +T     T   VL   +   P    + + 
Sbjct: 586 LA-GSKFNLGSPKQLSDLLFNKLGLSAKKSRKTSLGYSTDAAVLEKLRDDHPIVEAILSY 644

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R  A                               +         P    PR  R H + 
Sbjct: 645 RTLA-------------------------------KLKSTYVDALPLLVDPRTDRVHTDF 673

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q +T      +S+P+   I      S  +R   +   G  LV AD + IE R+LA +  
Sbjct: 674 NQTVTTTGRLSSSNPNLQNIPVRTSFSRRIRRAFVPEPGWLLVAADYSQIELRILAHLTQ 733

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E   L+AF+TG D++  T          +VT ++R + K++   + Y  GA   ++ A  
Sbjct: 734 EPVLLEAFQTGGDVHTLTARLLLGR--EEVTSEERRLAKIINYGVVYGMGA---RRFARE 788

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           TG++       +K       +     F     E     A+E  ++ T   R ++ +R   
Sbjct: 789 TGVSATEAEDFIKAFY--RRYPAVFGF----MEQTRRMAVEQGYVETLLGR-RRYFRGLG 841

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                      +A       G A    K   V L      +    L+L     LV+
Sbjct: 842 QLNQRDREGALRAAFNAPIQGTAADIIKIAMVRLEQTLAGRRT-RLLLQVHDELVF 896


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/603 (15%), Positives = 187/603 (31%), Gaps = 92/603 (15%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------VMPQVLKEALENTDV 66
            ID    G     E +   L    F D   + +     P       +   L+   EN   
Sbjct: 384 SIDTETTGT----EPMEAELVGMSFSDAENKGYYVPVPPNREEALKIINELRPLYENEKS 439

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKM 123
             V  N  ++  VL+   N  + +   +   +LA     P     +  + E       + 
Sbjct: 440 LKVGQNIKYDMIVLQ---NYGVQVRGALFDTMLAHYVLQPELRHNMDYLAEIYLH--YQT 494

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179
               ELI    K + +     R+ P           Y   D  +T ++   LE       
Sbjct: 495 IHIDELIGAKGKNQKN----MRDLPAED-----VYRYACEDADITLKLKNVLEKELKEQG 545

Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  L  +   I   G  +D       ++   V   ++++ +  L  G   + 
Sbjct: 546 AEHLFYEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIYELA-GETFNI 604

Query: 234 RCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +++   LF +   +     T+T    T + VL S +       ++   R        
Sbjct: 605 GSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRGKHAVIGKILEYR-------- 656

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                  G  +         P     R  R H   +Q +T    
Sbjct: 657 -----------------------GLKKLLSTYIDALPQLINSRTGRIHTSFNQAVTSTGR 693

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +S+P+   I         +R   I  +G +   AD + IE R++A ++ ++  + AF 
Sbjct: 694 LSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMIDAFL 753

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +G D++  T A+ + +   +VT D R   K     + Y         +A    ++     
Sbjct: 754 SGHDIHAATAAKIYKIDIEEVTSDMRRKAKTANFGIIYGISVF---GLAERLNVSRQEAK 810

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L+        + +     +   +   + A E+ ++ T   R K+     +SR + +   
Sbjct: 811 ELIDG------YFETYPQVKEYMDKSIQVARENGYVETIFHR-KRFLPDINSRNAVVRGY 863

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLN 581
             +        G A    K      +Y +   N L   ++L     L +    + +  + 
Sbjct: 864 AERNAINAPIQGSAADIIKVAMAH-IYQRITSNKLKAKMILQVHDELNFSVPASEKELVQ 922

Query: 582 TTT 584
              
Sbjct: 923 QIV 925


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 108/634 (17%), Positives = 198/634 (31%), Gaps = 140/634 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+  V  +A N  ++  ++K      + +  +  T++++        L+A     
Sbjct: 469 LKDLLEDEAVLKIAQNLKYDYLLMKRH---GVVMQSFDDTMLISYV------LEAGKTTH 519

Query: 117 KLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            + +      G   IA     +        +             Y   D  VT  ++  L
Sbjct: 520 GMDTLSERWLGHTPIAY----KDVAGSGKSSITFDFVDIDKATAYAAEDADVTLRLWMVL 575

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P  + E+           L  +   + +RG  VD  +   L+  +  +    ++E+  L
Sbjct: 576 KPRLAAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEEEVYQL 635

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L   LF   GL     T+T    T  +VL        +         
Sbjct: 636 A-GERFNIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQVLEDLAAEGAELP------- 687

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                  R  + +   ++         P    P+  R H     
Sbjct: 688 -----------------------RKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYAL 724

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      +S+P+   I         +R+  I++ G KL+ AD + IE RVLA +A   
Sbjct: 725 ASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIP 784

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               AFE G D++  T +  F V    +  + R   K +   + Y   A       S   
Sbjct: 785 QLRSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIAR 844

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                               +A  + +   E  P                    R     
Sbjct: 845 -------------------SEAGEYIKKYFERFP------------------GIRDYMEA 867

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                      + +TI   +A     R                   PS ++       N 
Sbjct: 868 TKAF--ARENGYVETIFGRRAHYPEIRSSN----------------PSMKAF------NE 903

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           R+ +N   +         G   + I +A+ R    E ++ A K    ++L VHDE++ E 
Sbjct: 904 RAAINAPIQ---------GSAADIIRRAMVR---IEPVLEAEKLSARMLLQVHDELIFEV 951

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
            + + E    ++  +M +    A  +  PLK + 
Sbjct: 952 EEGEIEKTLPIVVSVMENAAMPAISMRVPLKVDA 985


>gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
 gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
          Length = 1003

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 114/654 (17%), Positives = 208/654 (31%), Gaps = 136/654 (20%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           LFA G  D  +E         + + L   LE+  V     +  F   +L      +I + 
Sbjct: 458 LFASGLADGQIEA------AKVLETLTALLESEAVLKTGFDIKFAAVLLAQH---NITLR 508

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                 +++ +     +   +     L+ Q +  G E+IA     +      +R   +  
Sbjct: 509 TVDDVQLMSYALDAGRSSHDIEA---LAEQWL--GHEMIAH---ADIVGSGRNRISLDQV 560

Query: 152 EAWRLFGEYCKGDVTVTREIF---------KRLEPLSSK-EQELWYLDQTINDRGYCVDV 201
           E      EY      V   ++         +R+  +    E+ L  +   +  RG  +D 
Sbjct: 561 EI-PRAAEYGAESADVIMRLWLVFKARLISERMNNVYESLERPLIDVLARMERRGIMIDR 619

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
            +   L+        +L+ E+  +  G   +    ++L   +F + GL     T+T    
Sbjct: 620 QVLARLSGEFAQSAARLEAEIREIA-GEDINPGSPKQLGDVMFGKMGLPGGQKTKTGAWS 678

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
             +S  +   +A   F                           R  L +   S+      
Sbjct: 679 TTASILEDLAEAGHDFP--------------------------RKILDWRQVSKLKSTYT 712

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P   LP+  R H       T      +++P+   I         +R   IA++G KL
Sbjct: 713 DALPTHLLPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAKGHKL 772

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + IE R+LA +A      +AF+ G D++  T +  F V    +  + R   K + 
Sbjct: 773 VSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPGEVRRRAKAIN 832

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A     +A+  G+        +K     E +     +    ++   EH    
Sbjct: 833 FGIIYGISAF---GLANQLGIPREEAGAYIK--KYFERFPGIRAYMDATRDFCREHGYV- 886

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                     +  ++   P +       
Sbjct: 887 ----------------------------------------TTLFGRKCHYPDIKASN--- 903

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                 PS R+   R   N R                 G   + I +A+ R    E  + 
Sbjct: 904 ------PSLRAFNERAAINARL---------------QGTAADIIRRAMIR---MEDALT 939

Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             K    ++L VHDE+V E PD++ +    ++  +M   P  A  L  PL+ + 
Sbjct: 940 QKKLAARMLLQVHDELVFEVPDSEVDKTLPVIREVMEQAPFPATALSVPLRVDA 993


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 114/698 (16%), Positives = 210/698 (30%), Gaps = 171/698 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMP-QVLK 58
           +D ET S +D   C          ++  +  F           H      D  +    LK
Sbjct: 322 LDLET-SSLDPFNC---------EIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSKLK 371

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
           E LE+    IV  N  ++  VL       I         ++A     P          +L
Sbjct: 372 EILEDPSSKIVGQNLKYDYKVL---MVKGISPVYPHFDTMIAAYLLEPNEKKFNLEDLSL 428

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K    KM   +EL++ F                          Y   D  +T  ++K L 
Sbjct: 429 KFLGYKMTSYQELMS-FSSPLF-------GFSFADVPVDKAANYSCEDADITYRLYKILS 480

Query: 177 -PLSSKEQE---------LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             L   E E         L  +   +   G  VD      L++    +  +L +++  + 
Sbjct: 481 MKLHEAELENVFYRIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEKIYQIA 540

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNNRM 281
            G   +    +++   LF + G+     T  T +      VL            +     
Sbjct: 541 -GEPFNINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRIEVLEEIANEHEIVPLILE--- 596

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                       +    +         P    P+  R H    Q
Sbjct: 597 ----------------------------YRKIQKLKSTYIDTLPKLVNPKTGRIHASFHQ 628

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGE 395
             T      +SDP+   +         +R  ++       +V AD + IE R+LA ++G+
Sbjct: 629 TGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGD 688

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  +KAFE G D++  T +R +NV P +V ++ R +GK++  ++ Y              
Sbjct: 689 ENLVKAFEEGIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTPYGLSV---RL 745

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+ +     ++ +                                               
Sbjct: 746 GIPVKEAEKMIISYFTLYP----------------------------------------- 764

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
              ++ + + Q   +  E G       R+      M +DKN                   
Sbjct: 765 ---KVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKNT--------------QSEG 807

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
            R  +NT                   +Q  + DI+   M++             +++ VH
Sbjct: 808 ERIAINTP------------------IQGTAADIIKLAMIDIDEELRKRNMKSRMIIQVH 849

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E PD ++     ++ + MT+       +PL+ +
Sbjct: 850 DELVFEVPDEEKEELVDLVKNKMTNVVK--LSVPLEVD 885


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 105/614 (17%), Positives = 200/614 (32%), Gaps = 92/614 (14%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALE 62
           D ET S   L          D  ++  AF ++           +      + + L+   E
Sbjct: 374 DTETTSLNTL----------DAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEELRNFFE 423

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           N  +  +  N  ++  VL       I +   +   ++A     P         A    + 
Sbjct: 424 NDKIEKIGQNLKYDIKVLDKY---KIDVKGALFDTMIAHYLINPDMRHNMDVLAETYLNY 480

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177
             +   ELI +  K +               A     EY   D  +T ++    E     
Sbjct: 481 TPQPISELIGKKGKNQGS---------MRDVALDKQTEYAVEDADITFQLKNLFEKELEE 531

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                  +  E  L  +   +   G  +D     +L++ +  +   L+ ++     G   
Sbjct: 532 AETRKLFNEIEIPLVEVLADMELEGIKLDEEYLKSLSEALASDIKDLETKIYE-AAGEEF 590

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                ++L   LF +  L      T+T    T + VLSS  +       V          
Sbjct: 591 LISSPKQLGIILFEKMELSKKPKKTKTGQYSTSEDVLSSLAEENDIVQHVL--------- 641

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                  + G  +         P Q      R H +  Q     
Sbjct: 642 ----------------------DYRGLVKLQNTYVDALPNQVERTTGRVHTDYVQTTAAT 679

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I         VR   +   E   L+ AD + IE R++A ++ E+  ++
Sbjct: 680 GRLSSNNPNLQNIPIRTERGKQVRKAFVPRDENYVLLAADYSQIELRIIAALSNEENMIQ 739

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ GED++ +T A+ FNV   +VT++QR+  K +   + Y   A     +++ T L+ +
Sbjct: 740 AFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTSLSRS 796

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L+ T    + +    NF     E   E+      +G      ++  +  +SR + +
Sbjct: 797 ESKELIDTYY--KTYPKLSNFIADQVEFARENGHVSTVLGR-----RRYLKDINSRNAIV 849

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSY 579
                +        G A    K   + +    K++N    ++L     LV+ D   +   
Sbjct: 850 RGAAERNAVNAPIQGSAADIIKLAMINIHKKLKEENYKTKMLLQVHDELVF-DAHKDELE 908

Query: 580 LNTTTRQLTREYTY 593
                 +   E  Y
Sbjct: 909 KVQKMIKSEMENAY 922


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 98/583 (16%), Positives = 197/583 (33%), Gaps = 84/583 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70
           D    G+        ++  AF ++                  + + L+   E+T +  + 
Sbjct: 382 DTETTGLDPLV--AELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRPFFEHTGIEKIG 439

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129
            N  ++  VL      D+ +   +   +LA     P         A    +       EL
Sbjct: 440 QNLKYDIKVLAKY---DVKVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNYTPVSITEL 496

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179
           I +  K +       R+ P          EY   D  +T ++ +  E            +
Sbjct: 497 IGKKGKNQKS----MRDVP-----LDQQTEYAVEDADITLQLKQHFEKELDEAGTRKLFN 547

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +DV    +L+  ++ +  +L  E+     G        ++L
Sbjct: 548 DIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYEEA-GEEFKISSPKQL 606

Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF +  L      T+T    T + VLS   K      +V                  
Sbjct: 607 GEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVL----------------- 649

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                          + G S+         P Q   +  R H +  Q +       +++P
Sbjct: 650 --------------DYRGLSKLKSTYVDALPEQV-AQDGRVHTDYMQTVAATGRLSSNNP 694

Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         VR   +   E   L+ AD + IE R++A ++ E+  ++AF  GED+
Sbjct: 695 NLQNIPIRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFTDGEDI 754

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T A+ FNV   +VT++QR+  K +   + Y   A     +++ T L+      L+  
Sbjct: 755 HASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGEAKELID- 810

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
            +  + +    N+   + +   E+     ++ T  +R ++     +S    +     +  
Sbjct: 811 -NYYKSYPKLRNYMSELVDFARENG----YVKTVLDR-RRYLNGINSSNGVVRGAAERNA 864

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570
                 G A    K   + +    ++ +    ++L     LV+
Sbjct: 865 VNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVF 907


>gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
 gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
          Length = 839

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 98/522 (18%), Positives = 174/522 (33%), Gaps = 139/522 (26%)

Query: 171 IFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++ +      E+ LW+L +            +  RG  +DV     L+Q +  E  +L+
Sbjct: 420 LWREMSDRLEGEERLWWLYREVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELERLE 479

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAI 274
            E+  L  G   +    ++L+T L+ E GL     T  T +R     VL + +   P   
Sbjct: 480 AEIHRLA-GHPFNLNSRDQLETVLYDELGLAAGRRTAKTGKRSTSASVLETLRGAHPIVE 538

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++                                Q+   ++         P    PR  R
Sbjct: 539 KIL-------------------------------QYRELAKLKGTYLDPLPKLVHPRTGR 567

Query: 335 SHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q  T      +SDP+   I     I   +R   +A EG  LVVAD + IE RVL
Sbjct: 568 LHTRFHQTGTATGRLSSSDPNLQNIPIRTEIGRRIRKGFVAGEGYLLVVADYSQIELRVL 627

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++G++  ++ F+ G D++  T A  F V   +V   +R   K +   + Y   A    
Sbjct: 628 AHLSGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAAKTINFGVLYGMSA---H 684

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           +++   G++                + +A+ F     +++P       F+    E  ++ 
Sbjct: 685 RLSRELGID----------------YGEAQAFIDRYFDSYP---GVRAFMERVLEEARER 725

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                     + +  R+R    L+   ++               
Sbjct: 726 -----------------------GYVETLFGRRRHVPELLSKARN--------------- 747

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIV 625
                  R   N                    VQ  + D++   M          G  ++
Sbjct: 748 -VREAAERVAFNMP------------------VQGTAADLIKLAMVKLAPRLEPLGAALL 788

Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
           L VHDE+V E P+      A ++   M    +W   +PL  E
Sbjct: 789 LQVHDELVVEAPEERAAETARVVKATMEE--AWRLDVPLAVE 828


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 101/609 (16%), Positives = 189/609 (31%), Gaps = 100/609 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQ 55
           ID ET S             +     +        P E +          +     V+ +
Sbjct: 322 IDLETSS------------LDPFDCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVL-K 368

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
            LKE LE+    IV  N  F+  VL       +P +      ++A     P         
Sbjct: 369 KLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPY---FDTMIAAYLLEPNEKKFNLDD 425

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    KM   +EL++ F                          Y   D  +T  ++K
Sbjct: 426 LALKFLGYKMTSYQELMS-FSFPLF-------GFSFADVPVEKAANYSCEDADITYRLYK 477

Query: 174 RLE-PLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L   L            E  L  +   +   G  VD      L++    +  +L +E+ 
Sbjct: 478 TLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIY 537

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFN 278
            +  G   +    +++   LF + G+     T  T        VL            +  
Sbjct: 538 RIA-GEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE 596

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          +    +         P    P+  R H  
Sbjct: 597 -------------------------------YRKIQKLKSTYIDALPKMVNPKTGRIHAS 625

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392
            +Q  T      +SDP+   +         +R  ++       +V AD + IE R+LA +
Sbjct: 626 FNQTGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHL 685

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L+AFE G D++  T +R FNV P +VT++ R  GK++  ++ Y           
Sbjct: 686 SGDENLLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV-- 743

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+ +     ++   +    +    ++ + +     E        G   +  +   R 
Sbjct: 744 -RLGVPVKEAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARD 800

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571
           ++++         +    T   G A    K   + +    K++     +++     LV+ 
Sbjct: 801 RNTQAEG-----ERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFE 855

Query: 572 DVGNNRSYL 580
                +  L
Sbjct: 856 VPNEEKDAL 864


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 102/609 (16%), Positives = 189/609 (31%), Gaps = 100/609 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQ 55
           ID ET S             +     +        P E +          +     V+ +
Sbjct: 322 IDLETSS------------LDPFDCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEVL-K 368

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
            LKE LE+    IV  N  F+  VL       +P        ++A     P         
Sbjct: 369 KLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPP---HFDTMIAAYLIEPNEKKFNLDD 425

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    KM   +EL++ F          D               Y   D  +T  ++K
Sbjct: 426 LALKFLGYKMTSYQELMS-FSSPLFGFSFVD-------VPLEKAANYSCEDADITYRLYK 477

Query: 174 RLE-PLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L   L            E  L  +   +   G  VD      L++    +  +L +E+ 
Sbjct: 478 TLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIY 537

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFN 278
            +  G   +    +++   LF + G+     T  T        VL            +  
Sbjct: 538 RIA-GEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE 596

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          +    +         P    P+  R H  
Sbjct: 597 -------------------------------YRKIQKLKSTYIDALPKMVNPKTGRIHAS 625

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392
            +Q  T      +SDP+   +         +R  ++       +V AD + IE R+LA +
Sbjct: 626 FNQTGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHL 685

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L+AFE G D++  T +R FNV P +VT++ R  GK++  ++ Y           
Sbjct: 686 SGDENLLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV-- 743

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+ +     ++   +    +    ++ + +     E        G   +  +   R 
Sbjct: 744 -RLGVPVKEAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARD 800

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571
           ++++         +    T   G A    K   + +    K++     +++     LV+ 
Sbjct: 801 RNTQAEG-----ERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFE 855

Query: 572 DVGNNRSYL 580
                +  L
Sbjct: 856 VPDEEKDAL 864


>gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
          Length = 925

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 105/642 (16%), Positives = 195/642 (30%), Gaps = 160/642 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVG 113
           L+  LE+  +  +  N  +++ + K   N DI +   +   +LA     + L   L  + 
Sbjct: 401 LQPFLESESLGKIGQNLKYDQHIFK---NQDIDLKGIVGDAMLASYIVESHLTHNLDDLA 457

Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              L L +   E         C     E              +   +Y   D      I 
Sbjct: 458 ARWLGLETISYES-------LCGKGAKEIS------FADVDVQAATQYACQDADFALRIE 504

Query: 173 KRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + L               E  +  +   +   G  +D A     +  +  E  +L+Q+  
Sbjct: 505 QHLRTQMDAAQLALYQQMELPVAQVLFEMERAGVQIDRAELAQQSATLGAELLQLEQQAY 564

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVF 277
            L  G   +    ++L+  LF + G+  + + +T      T + VL       P    + 
Sbjct: 565 ELA-GQPFNLNSPKQLQEILFDKLGIPTKGVKKTAKGGLSTDESVLEKLADDYPLPKIIL 623

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                          Q    S+             LP+  R H 
Sbjct: 624 -------------------------------QTRSLSKLKSTYTDKLAEMILPQTGRVHT 652

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q +       +++P+   I         VR    A +   +V AD + IE R++A +
Sbjct: 653 NYAQAVAITGRLASNNPNLQNIPIRTEQGRRVRRAFTAPQNCVIVSADYSQIELRIMAHL 712

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+     AF   ED++  T A  F +AP  +T +QR   K +   L Y         +A
Sbjct: 713 SGDTTLQAAFHNNEDVHRRTAAEVFGMAPEHITSEQRRYAKTINFGLIYGMSEY---GLA 769

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            + G++  +                                             K   ++
Sbjct: 770 KSLGIDAMSA--------------------------------------------KMFIQR 785

Query: 513 KHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +R + + + + +  EQ  + G    +  +R  +P ++ K                   
Sbjct: 786 YFARYTGVADYMQRTKEQAQQLGYVETLFGRRLYLPDIHAKN---------------AMT 830

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625
             G  R+ +N                     Q  + D++   M++             +V
Sbjct: 831 RAGAERAAINAPM------------------QGTASDLIKRAMISVQDFLRQSSLHSRLV 872

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDE+V E  D++       L  LM         +PL AE
Sbjct: 873 MQVHDELVLEVHDSELALIREKLPELMAQVGVGVLNVPLLAE 914


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 118/691 (17%), Positives = 228/691 (32%), Gaps = 152/691 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----P-QV 56
             + +D ET SP  +               L    F     + +       +    P   
Sbjct: 343 KQISLDTETDSPEPMRAN------------LVGISFCMDEKKAYYLPLGHQLAVNLPLPE 390

Query: 57  LKEALENT--DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +   LE+      ++ HN  F+  VL       + +   +   +LA     P  L    E
Sbjct: 391 VLRHLEDALKGKLLLGHNLKFDLIVLAR---NGLELDNPLFDTMLAAYILDPGTLNYSLE 447

Query: 115 --ALKLSSQKMEEGKELIARFCKGETHECLYDRNK--PNHREAWRLFGEYCKGDVTVTRE 170
             AL   + KM    +LI +     T + +        +  +AW ++  Y      V   
Sbjct: 448 TCALNELNYKMIPISDLIGKGKNQSTFDLVEPEKACIYSAEDAWAVYKLYPVYRRKVDFS 507

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +   L    + E  L  + Q +   G  +D ++   ++  +++E   L  ++ +   G  
Sbjct: 508 VMANL--FDTIELPLIKVLQQMEMNGVAIDCSVLSEISHQINLELKTLTDKIYAFA-GYE 564

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L   LF E  L     T+T                                 
Sbjct: 565 FNINSTQQLAKLLFEEKKLPYGRKTKTGYSTD---------------------------- 596

Query: 291 LNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            N+++E +  D  + G + Q+   S+         P    P+  R H   +Q +T     
Sbjct: 597 -NSVLEELAIDYEIAGIIIQYRQLSKLQSTYVSALPKMINPQTGRIHSSFNQTVTSTGRL 655

Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFE 403
            +S+P+   I     I   +R    A + + L+  AD + IE R+LA M+ ++  ++AF+
Sbjct: 656 SSSNPNLQNIPVRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFK 715

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++    A+ FNV   +VT DQR   K +   + Y  G    +K++   G++L    
Sbjct: 716 QDLDIHKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQ---RKLSRELGISL---- 768

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                      K      +++   + N 
Sbjct: 769 ----------------------------------------NEAKDIIDGYYAQFPSIRNF 788

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           ++Q   +  +   A                           GR L   ++ +    L + 
Sbjct: 789 INQCVNKARQQHYAETLF-----------------------GRRLYLPNIDSKNQGLKSE 825

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPD 638
             ++              +Q  + D++   M+N  K         ++L VHDE++ E   
Sbjct: 826 AERI---------AVNMPIQGTAADLIKIAMLNIHKQIDKREDIKMILQVHDELLFEVQQ 876

Query: 639 TD-EFNASMLYHLMTS--NPSWAKGLPLKAE 666
              E   +++   M S   P +A+ + LK +
Sbjct: 877 EALEETKNIVKTCMESALPPKYAEKVHLKTD 907


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 121/710 (17%), Positives = 225/710 (31%), Gaps = 164/710 (23%)

Query: 2   ATLFIDFETRSPIDLTK--CGI-CKYAEDV-CVILFAFGFDDHPVELWDCVHDPVMP-QV 56
             + ID ET S         G+   + E +  ++    G  +   +L        +  + 
Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKINQINQLKIEE 444

Query: 57  LKEALEN----TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSAL 109
           +  AL++     +      N+ ++R +L       I ++  +   +LA       L  +L
Sbjct: 445 VIFALQDWFSSNENHKTLQNAKYDRLIL---LRHGIILNGVVIDTLLADYIFDATLKHSL 501

Query: 110 KAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             +                    F  K ++   +  + +       +    YC  DV +T
Sbjct: 502 DEIA----------------YREFGFKPKSFSDVVKKGEDFSYVDIKSASMYCGMDVYLT 545

Query: 169 REIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           R++             K +  L   EQ L  +   I   G  +D      L+  +  +  
Sbjct: 546 RKLAIIYINRLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKKLN 605

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
            +++E+ ++  G   +    ++L   LF +  L  +   +T     T   VL   +   P
Sbjct: 606 TIEKEVYNIA-GSEFNLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESDHP 664

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +  +R                                 S+         P      
Sbjct: 665 IVKMIIEHR-------------------------------TISKLLNTYVDALPKLIEKE 693

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H + +Q +T      +S+P+   I      S  +R   +  +  KL+ AD + IE 
Sbjct: 694 TGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQKDWKLLSADYSQIEL 753

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L  ++GE+    A+   ED++  T    F      +  D+R IGK +   + Y  GA 
Sbjct: 754 RILTHLSGEEVLKNAYLKNEDVHSLTAKLLF--EKDAIDADERRIGKTINFGVIYGMGA- 810

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             Q+ A +TG++L    + +  +   E +    NF  +        A+   F+ T   R 
Sbjct: 811 --QRFARSTGVSLIEAKYFL--SKFKERYPAVFNFLEY----QERLALSQGFVETLLGRR 862

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           +                                          Y   +KN L  +L +  
Sbjct: 863 R------------------------------------------YFHFNKNGLGRLLGTPP 880

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKA--- 620
           +                     R      +L       +Q  S DI+   M+    A   
Sbjct: 881 N-------------EIDLTTARRAGMEAQQLRAAANAPIQGSSADIIKLAMIQLHSALRE 927

Query: 621 ---GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                 I+L VHDE+V E  P   E    ++ + M +       +PL  E
Sbjct: 928 TGLAAKILLQVHDELVLEVNPKDLEETKLLVKNTMENAVK--LSVPLIVE 975


>gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN]
          Length = 870

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 112/605 (18%), Positives = 193/605 (31%), Gaps = 142/605 (23%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +  +LK+     D+T   +N    R    A  N  I I      L LA        
Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLK--RDC-HALLNAGIVIREISYDLALAEH------ 398

Query: 109 LKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L   G  +   S  +  G  E   RF K   +  L     P   E +  FGE       +
Sbjct: 399 LTNGGGKISFQSLLVNHGFTETAHRFAKEWGNLGLPIGRLPEQPEQY--FGELVAYLPII 456

Query: 168 TREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              I + +        LS  E  L  +  ++   G  +DV     L  + + E   L +E
Sbjct: 457 KDAILEEINRKNLNHILSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELAVLTEE 516

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  L+ G   + +  ++L   L+ E GL   D  ++T   VL + +   P   ++     
Sbjct: 517 IYDLS-GRPFNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLA--- 572

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                       F    +         P Q      R H   DQ
Sbjct: 573 ----------------------------FRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQ 604

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
             T        DP+   I         +R     SE     + AD + IE R LA ++ +
Sbjct: 605 TGTVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQD 664

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    AFE+GED++  T ++ F+V   QV+K+QR   K +   + Y   A     +A   
Sbjct: 665 KSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAF---GLAKVL 721

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +++     L++       + +  +F         + A +DL + T   R          
Sbjct: 722 KISVGEAQELIQA--YFSRYPEIAHFVEETI----QQAAKDLRVTTMLGR---------E 766

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R+ + WNE                                       P  R+        
Sbjct: 767 RIIDSWNEF--------------------------------------PGSRAAS------ 782

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
            R  +NT  +                    + +++   M++ ++A         ++L +H
Sbjct: 783 GRFAVNTRIQG------------------SAAELIKLAMLDISQAIKQQQMKSRMLLQIH 824

Query: 630 DEIVC 634
           DE++ 
Sbjct: 825 DELLF 829


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 121/707 (17%), Positives = 225/707 (31%), Gaps = 158/707 (22%)

Query: 2   ATLFIDFETRSPIDLTK--CGI-CKYAEDV-CVILFAFGFDDHPVELWDCVHDPVMP-QV 56
             + ID ET S         G+   + E +  ++    G  +   +L +      +  + 
Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEINQINQLKIEE 444

Query: 57  LKEALEN----TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           +  AL++     +      N+ ++R +L       I ++  +   +LA            
Sbjct: 445 VIFALQDWFSSNENPKTLQNAKYDRLIL---LRHGIILNGVVMDTLLADYI--------C 493

Query: 113 GEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              LK S  ++         F  K ++   +  + +       +    YC  DV +TR++
Sbjct: 494 DATLKHSLDEIA-----YREFGFKPKSFSDIVKKGEDFSYVDIKSASMYCGMDVYLTRKL 548

Query: 172 F------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                        K +  L   EQ L  +   I   G  +D      L+  +      ++
Sbjct: 549 AIIYINRLKETSIKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKRLNTIE 608

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274
           +E+ ++  G   +    ++L   LF +  L  +   +T     T   VL   +   P   
Sbjct: 609 KEVYNIA-GSEFNLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESDHPIVK 667

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R                                 S+         P        R
Sbjct: 668 IIIEHR-------------------------------TISKLLNTYVDALPKLIEKETGR 696

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H + +Q +T      +S+P+   I      S  +R   +  +  KL+ AD + IE R+L
Sbjct: 697 VHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQKDWKLLSADYSQIELRIL 756

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
             ++GE+    A+   ED++  T    F      +  D+R IGK +   + Y  GA   Q
Sbjct: 757 THLSGEEVLKNAYLKNEDVHSLTAKILF--EKDAIDADERRIGKTINFGVIYGMGA---Q 811

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           + A +TG++L    + +  +   E +     F  +        A+   F+ T   R +  
Sbjct: 812 RFARSTGVSLIEAKYFL--SKFKERYPAVFKFLEY----QERLALSQGFVETLLGRRR-- 863

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                   Y   +KN L  +L +  +  
Sbjct: 864 ----------------------------------------YFHFNKNGLGRLLGTPPN-- 881

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKA------ 620
                              R      +L       +Q  S DI+   M+    A      
Sbjct: 882 -----------EIDLTTARRAGMEAQQLRAAANAPIQGSSADIIKLAMIQLHSALRETGL 930

Query: 621 GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
              I+L VHDE+V E  P   E    ++ + M +       +PL  E
Sbjct: 931 AAKILLQVHDELVLEVNPKDLEETKLLVQNTMENAVK--LSVPLIVE 975


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 106/633 (16%), Positives = 201/633 (31%), Gaps = 147/633 (23%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           + ++   + + L+  LE+ +      N+ F+R +L+   +  I +   +   +LA     
Sbjct: 216 EMLNIEQVLEALRPILESEEYPKTLQNAKFDRLILR---SQGITLKGVVFDTMLASYIIN 272

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
           P +      +  L+   +    +L       +++  L  + K            YC  DV
Sbjct: 273 PES------SHNLTDLSLRYLPDL---GIVAQSYSQLVPKGKTIADLDINTVANYCGLDV 323

Query: 166 TVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             T +I ++++ +              EQ L  +   +  +G  +D    + L+Q +   
Sbjct: 324 FTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGET 383

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKL 269
              L++       G V +    ++L   LF    L  +   +T     T   VL   K  
Sbjct: 384 LDNLEKTSHQ-AAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHD 442

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P                                +   L++   S+         P    
Sbjct: 443 HPV-------------------------------INSILEYRTLSKLKSTYVDALPELVR 471

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384
               R H + +Q IT      +S P+   I      S  +R   I   G  LV AD + I
Sbjct: 472 SDTGRIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQI 531

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E+  ++A+ T +D++  T    F+     +T ++R +GK++   + Y  G
Sbjct: 532 ELRILAHLSQEKVLIEAYNTNQDVHSLTAKLLFDR--DGITPEERRLGKIINFGVIYGMG 589

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A   Q+ A   G++       +        +           E+    AI   ++ T   
Sbjct: 590 A---QRFAREVGVSATAGKQFID------RFNSQYPGVFEYLESQKLAAINQGYVETILG 640

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R                              +++  R R                     
Sbjct: 641 R--------------------------RRYFESLKGRDR--------------------- 653

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KA 620
              L Y+D    R+  N   +                    S DI+   M+         
Sbjct: 654 -DRLNYQDEQMLRAAANAPIQ------------------GSSADIIKIAMIKLAEILKNY 694

Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMT 652
              ++L VHDE+V E P ++       +   M 
Sbjct: 695 QARLLLQVHDELVFEVPLSEWEELEYQIKSTME 727


>gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
 gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
          Length = 944

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 91/592 (15%), Positives = 184/592 (31%), Gaps = 83/592 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKEALENTDVTIV 69
           +D     +  +  +  +   +   +          +  + P    ++L+  LEN ++   
Sbjct: 375 VDTETTSLNTF--EAELAGISISTEARKARFIALANSSLNPQSALELLRPLLENPELPKT 432

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
             N  ++  VLK    +D+    +  T++ +              A +    K    +EL
Sbjct: 433 GQNLKYDILVLKKY-GIDLTPVGF-DTMLASYVLDPEEKHNLDDLAARHLGYKTTTFEEL 490

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                                        +Y   D  +  ++ +        E+EL +L 
Sbjct: 491 ----------TGTGKAKLHIFDVEPEQLSDYACQDADLALQLEEIFRKKLEGEKELLWLC 540

Query: 190 QTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           + I              G C+D       ++ V  E   L +++ +   G   +    ++
Sbjct: 541 EHIEFPLVSVLAAMEHAGICIDTPHLEKTSEAVGKELELLTEKIYA-ASGAPFNIDSPKQ 599

Query: 239 LKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L   LF   GL  +  T+T       VL    +L P    +                   
Sbjct: 600 LSNILFNVLGLPTKKSTKTGFSTNVEVLEELAELHPVVASLLE----------------- 642

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                         +    +         P    P   R H   +Q IT      +S+P+
Sbjct: 643 --------------YRTLQKLKTTYIDALPKIVNPLTGRLHTSFNQFITATGRLSSSNPN 688

Query: 356 PLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I     +   +R   I S   K L+ AD + IE R+ A ++G+   ++AF   ED++
Sbjct: 689 LQNIPIRSPLGKEIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFRNREDIH 748

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T    F     ++T D R   K +   + Y         ++    +  +    ++ T 
Sbjct: 749 TATARVIFGS--DEITPDMRRKAKEVNFGVLYGIMPF---GLSKRLNIPRSEAIAIIDTY 803

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
            A   +       + + E       +D ++ T   R ++     +SR S +     +A  
Sbjct: 804 KAK--YPGLFLALQEIIET----GKKDGYVSTLLGR-RRYIADLNSRNSNIQKAAERAAM 856

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580
            T   G A    K          +  +   +++L     L++      +  L
Sbjct: 857 NTPIQGTAADIIKCAMNLCSERLRKNSMRSVMLLQVHDELLFETTDEEKEPL 908


>gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
 gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
          Length = 896

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 113/702 (16%), Positives = 218/702 (31%), Gaps = 176/702 (25%)

Query: 7   DFETR-SPIDLT-KCGIC-------KYAEDVCVILFAFGFDDH--PVELW---DCVHDPV 52
           D ++  S I L+ K  +         Y +D+C+    F  ++   P  +           
Sbjct: 318 DLQSYISAIKLSGKVAVYYHVDPTGSYMDDLCI----FACNEEYAPANIVFSEKLTCQEA 373

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKA 111
           +   L+E  E+ D+    H    +   L     +  I +   I    +A     P+    
Sbjct: 374 L-NELREIFESKDIEKYGH----DLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTY 428

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-KPNHREAWRLFGEYCKGDVTVTRE 170
                +L   K+++              E LYD++ K   +E      E C   V     
Sbjct: 429 --TISELYEDKLKQSI---------TPVEILYDKHGKRLQQEQDISSSEVCAAAVNAIYV 477

Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + ++L P+             E  L  +   +  RG+ VDV      ++ +D     L+ 
Sbjct: 478 LIQKLRPIIRDNGQDELYYEIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVILEN 537

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277
           E+  +  G   +    ++L   LF + GL +   T+T       VL           ++ 
Sbjct: 538 EIY-MQAGETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTNAEVLEQLSYKHEIVERIL 596

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                                  +             L +  + H 
Sbjct: 597 EYRQLM-------------------------------KLKSTYADGL-LSVLEQDGKIHS 624

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391
             +Q +T      +++P+   I         +R   I  ++   L+ AD + IE RVLA 
Sbjct: 625 NFNQTVTATGRISSTEPNLQNIPVKLEMGRKIRKVFIPTNQDYVLLDADYSQIELRVLAH 684

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +  +   ++AF   ED++ TT ++ F + P +V+   R+  K +   + Y  G  +    
Sbjct: 685 ITDDSNMIEAFLKNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIGDFSLS-- 742

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G+        +       ++ D  +  +    +  E   E  F+            
Sbjct: 743 -KDIGVTKKEARQYID------DYLDKYSKVKEYMSDTVEKGKEFGFV------------ 783

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                      +  +RR +P +   K  N  +            
Sbjct: 784 -------------------------TTLYNRRRYLPEL---KSSNFNMRSF--------- 806

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625
                R  +NT                   +Q  + DI+   M+              ++
Sbjct: 807 ---GERVAMNTP------------------IQGSAADIIKISMVKVYNELKKRKLKSKLI 845

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           L VHDE++ ET  ++ E  + +L   M +       +PL  +
Sbjct: 846 LQVHDELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVD 885


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/674 (15%), Positives = 201/674 (29%), Gaps = 156/674 (23%)

Query: 15   DLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
            D     I     D+  + FA+   +    PV   D      +    K   EN  +  V  
Sbjct: 456  DSETTAIDPVEADLVGLSFAYRAGEAFYVPVPA-DRAEAQAIVDQFKPVFENPTIEKVGQ 514

Query: 72   NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELI 130
            N  ++  +LK      + +   +   ++A     P         A+   +    E + LI
Sbjct: 515  NLKYDLLMLKKY---GVEVQGKLFDTMIAHYLIEPEMRHNMDMMAMTYLNYSPVEIEALI 571

Query: 131  ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181
             +  KG+                 +   +Y   D  +T ++     P   K         
Sbjct: 572  GKKGKGQ---------LTMRDVDIQKVVDYAGEDADITLQLKHAFAPRLEKDNLHKLFDQ 622

Query: 182  -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
             E  L  +   +   G  +D      L+  ++V+  ++ QE+  +  G   +    ++L 
Sbjct: 623  VEMPLVQVLTDLELEGIKIDTNALSELSATLEVDMRQVQQEIFEIA-GESFNIGSPKQLG 681

Query: 241  TWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
              LF +  L      T+T    T + +LS  +     A ++ + R               
Sbjct: 682  EVLFDKLKLDKNAKKTKTGQYATGEEILSKLEAEHEIARKILDYRELI------------ 729

Query: 296  EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                               +         P     R  R H   +Q +       +++P+
Sbjct: 730  -------------------KLKNTYVDALPLLISKRTGRIHTSFNQAVAATGRLSSTNPN 770

Query: 356  PLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
               I         +R   +       ++ AD + IE R++A  +G+Q  L+AF  G D++
Sbjct: 771  LQNIPIRTPRGQEIRKAFVPRGPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIH 830

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              T ++ F+V   +VT D R   K +   + Y   +     +A    +       +++  
Sbjct: 831  TQTASKVFHVGLDEVTSDMRRKAKTINFGIIYGISSF---GLAQRLKIPRKEAGQIIE-- 885

Query: 470  SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                      +  +    + + + Q  E
Sbjct: 886  ------------------------------------------EYFAGFPAVKDYIDQCIE 903

Query: 530  QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
            +    G A     RR                         Y    N+R   N T R    
Sbjct: 904  KARGFGYAETILGRRR------------------------YLRDINSR---NQTDRMFAE 936

Query: 590  EYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EF 642
                        +Q  + D+L   M+         +    ++LTVHDE+V +    + + 
Sbjct: 937  RNA-----VNAPIQGSAADMLKIAMIQIHEFMQAERLKSKMILTVHDELVFDAHRDEIDL 991

Query: 643  NASMLYHLMTSNPS 656
                +  +M +   
Sbjct: 992  LRVRVDEIMKNAIP 1005


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/636 (16%), Positives = 207/636 (32%), Gaps = 149/636 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  L++  +  V  N  ++  VL    N  I ++      ++     N + +       
Sbjct: 393 LKPILQDESINKVGQNLKYDAHVLA---NYQIDLNGISDDTMVKSYVLNSVATRHNMDDL 449

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           ++   + +     ++  +  K  T   +                 Y   DV VT E+ K 
Sbjct: 450 SMHYLNHQTIHFSDVAGKGKKQITFNQV----------GLEAAFPYACEDVIVTHELNKV 499

Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L+    +  +L  L Q            +   G  +D  L +     V  +  ++  +  
Sbjct: 500 LDEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGLLNAQQLDVVKQMNEIQSQAF 559

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            L  G   +    ++++  LF E GL LE   + T +   S+N++          +    
Sbjct: 560 ELA-GDAFNLESPKQIQQILFSEEGLGLEAK-KKTPKGAPSTNEEALKLLDHPLVDL--- 614

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                   L +   ++         P Q      R H    Q +
Sbjct: 615 -----------------------ILSYRTLTKLNSTYLEALPKQIDLNTKRLHTSYHQAV 651

Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +S+P+   I     +   +R   IA +G  ++ AD + IE R++A ++ ++  
Sbjct: 652 TATGRLSSSNPNLQNIPIRTELGARIRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSL 711

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF    D++  T +  FNV   +V KD R   K +   L Y   A    K  + +   
Sbjct: 712 IEAFNNDVDVHSATASMMFNVPIEEVNKDHRRNAKAINFGLIYGMSAFGLAKQINVSRT- 770

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                             +A+ +     EN+                           V 
Sbjct: 771 ------------------EAKQYIDAYFENY-------------------------PGVL 787

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              + + +A +  ++     I  +R  +P +  K             + L    +   R+
Sbjct: 788 NYMDNIREAAK--VQGYVETIMGRRLYLPQINAK------------NKMLQQHAL---RT 830

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
            +N                     Q  S DI+ + M++             +++ VHDE+
Sbjct: 831 AINAPM------------------QGSSADIIKKAMLDVHEWIGDGNDEIKMIMQVHDEL 872

Query: 633 VCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E      DEF A+ +  LM +  ++   +PL  +
Sbjct: 873 VFEVNASKADEF-ANKIQELMAN--AYQLDIPLVVD 905


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 109/684 (15%), Positives = 207/684 (30%), Gaps = 171/684 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----Q 55
           +D ET S  ++             ++  +F             H        +P      
Sbjct: 385 LDTETTSLDEMR----------AQIVGISFSVTPGEAAYIPLAHAYPDAPAQLPLADVLA 434

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            LK  L++     +  +  ++R V     N  I +  +   T++ +    +         
Sbjct: 435 KLKPWLQDASHKKLGQHVKYDRHV---FANHGIEVQGYAHDTMLQSYVLEVTKPHGLASL 491

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +   +     ++L    C    ++  +D      +       +Y   D  +T ++ + 
Sbjct: 492 AERHLGRSGISFEDL----CGKGANQICFD------QVDIAQAAQYSCEDSDMTLDVHRA 541

Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L PL     +L   + L+         I   G  +D       +  +     +L++E   
Sbjct: 542 LWPLLQANDKLRFIYELEIASSEALYRIERNGVLIDGPTLAVQSHELGQRILQLEKEAHE 601

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    +++    F + GL +   T T    T   VL    +  P   ++  +R
Sbjct: 602 LA-GQPFNLSSPKQIAEIFFTKLGLPVVKKTPTGSPSTDDEVLQKLAEDYPLPAKILEHR 660

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G ++              PR  R H    
Sbjct: 661 -------------------------------GLAKLKGTYTDKLAQLAHPRTGRVHTHYA 689

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q I       + +P+   I         VR   +A  G  +  AD + IE R++A ++G+
Sbjct: 690 QAIAVTGRLSSLEPNLQNIPVRTPEGRRVREAFVAPPGSVIASADYSQIELRIMAHISGD 749

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G D++  T +  F V  AQVT +QR   KV+   L Y   A    K     
Sbjct: 750 AALLLAFHDGIDVHRATASEIFGVDRAQVTSEQRRYAKVINFGLIYGMSAYGLAKA---- 805

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L+++  A         + +   +N+    +           ++ T   R     R    
Sbjct: 806 -LSIDNTAAKNYIERYFDRYPGVKNYMEHTRALAKRQG----YVETVFGR-----RLYLP 855

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                            P+G     R  G 
Sbjct: 856 EINS-------------------------------------------PNG----PRRSGA 868

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
            R+ +N                     Q  + D++   M+         K    +++ VH
Sbjct: 869 ERAAINAPM------------------QGTAADLIKLSMVKVQQVIDEEKRATKMIMQVH 910

Query: 630 DEIVCETPDTD-EFNASMLYHLMT 652
           DE+V E P+++ ++    +  LM 
Sbjct: 911 DELVFEVPESEIDWVRHEVPRLMA 934


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVALEQEAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 48  DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 97

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 98  LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 155

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 156 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 205

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 206 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 265

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 266 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 323

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 324 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 353

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 354 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 413

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 414 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 470

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 471 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 523

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 524 NGPRRQAAERAAINAPMQGTA 544


>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
 gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
          Length = 929

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/675 (15%), Positives = 193/675 (28%), Gaps = 160/675 (23%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALE 62
            +D    G+        ++  +F  + H        H               Q LK  LE
Sbjct: 357 SLDTETTGLD--GMTAQLVGISFSIEAHQAAYLPLAHHYPGAPDQLGREHALQKLKHWLE 414

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +     +  N  +++ +          I     TL+ +         +    AL+     
Sbjct: 415 SPAHKKLGQNLKYDQHIFANHGIAFAGIAE--DTLLQSYVLESHKPHEMGNLALRHLGLS 472

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-- 180
                +++ +  K    + +                 Y   D  +T ++ + L P     
Sbjct: 473 TVSYADVVGKGAKQIGFDQV----------DLETATRYAAEDADITLQLHQTLSPQLQGR 522

Query: 181 -------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  +  +   +   G  +D A+    +  + ++  +++++      G   + 
Sbjct: 523 LDAVYRQIELPVREVLFKMERNGVLIDSAMLGRQSHELGLKLNEIEKQAFE-AAGQPFNL 581

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              ++L   LF +  L +       T +T + VL       P    +   R         
Sbjct: 582 NSPKQLSEILFDKLQLPVKKKTPSGTPSTDEEVLQELALDYPLPKLLLEYR--------- 632

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G ++         P     +  R H    Q +      
Sbjct: 633 ----------------------GMAKLKSTYTDKLPQMVNAKTGRVHTSYAQAVAVTGRL 670

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +SDP+   I         +R   I   G ++V AD + IE R++A ++G++  LKAF  
Sbjct: 671 ASSDPNLQNIPIRTPEGRRIREAFITPAGSRIVSADYSQIELRIMAHLSGDEGLLKAFAA 730

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F+VA   V+ +QR   KV+   L Y               LN+ T A 
Sbjct: 731 GEDIHRATAAEVFSVALDAVSSEQRRYAKVINFGLIYG-----MSAYGLAAQLNIETSAA 785

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                     K+      +R   +   +
Sbjct: 786 ------------------------------------------KQYIDLYFARYPGVKRYM 803

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
               EQ    G       RR               L LP              +  N   
Sbjct: 804 DSTREQAKAQGFVETWFGRR---------------LWLP------------EINGANGMR 836

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPD 638
           RQ               +Q  + D++   M+         K    +++ VHDE+V E P 
Sbjct: 837 RQAAERAA-----INAPMQGTAADLIKLAMIAVQDWLETEKLATKLIMQVHDELVLEVPQ 891

Query: 639 TDEFNA-SMLYHLMT 652
            +       +  LM 
Sbjct: 892 GELARVKDKVRELMC 906


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 304 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 353

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 354 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 411

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 412 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 461

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 462 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 521

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 522 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 579

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 580 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 610 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 669

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 670 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 726

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 727 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 779

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 780 NGPRRQAAERAAINAPMQGTA 800


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 50  DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 99

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 100 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 157

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 158 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 207

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 208 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 267

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 268 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 325

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 326 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 355

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 356 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 415

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 416 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 472

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 473 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 525

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 526 NGPRRQAAERAAINAPMQGTA 546


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/613 (16%), Positives = 193/613 (31%), Gaps = 102/613 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL-- 61
           L +D ET +  D         A +  ++   F  ++H            +P   K+AL  
Sbjct: 350 LSLDTET-TSTD---------AIEAELVGLCFAVEEHKAFYV------AIPNDRKQALQY 393

Query: 62  --------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAV 112
                   E+  +  +  N  ++  VLK   N  + +   +   +LA     P       
Sbjct: 394 VNIFKSVYEDPSILKIGQNIKYDYEVLK---NYGVTLQGKMFDTMLAHYVLQPELRHNMD 450

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A  L + K    +ELI        H+       P          EY   D  +T ++ 
Sbjct: 451 YMAETLLNYKTIHIEELIG---APGKHQKSMRDIAPEDA------YEYGAEDADITLQLR 501

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             LEP   +          E  L  +   +   G  VD A  H   +I      +L++ +
Sbjct: 502 NVLEPKLKEVAMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTERMNRLERHI 561

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
                G   +    +++   LF +   +     T+T    T + VL S +   P    + 
Sbjct: 562 YEEA-GETFNIASPKQVGDILFGKLQIMEKPKKTKTGQYVTNEEVLQSLRAKNPIVEDIL 620

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R                               G  +         P     R    H 
Sbjct: 621 AHR-------------------------------GLKKLLGTYVEALPKLIHKRTQHIHT 649

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +Q +T      +SDP+   I         +R C +   G     AD + IE R++A +
Sbjct: 650 SFNQALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEPGCLFFSADYSQIELRIMAHL 709

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  ++AF  G D++  T A+ ++   A VT ++R   K     + Y         +A
Sbjct: 710 SGDENMIEAFREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYGITTY---GLA 766

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++      L+      E++       +   E   E A +  +  T   R ++    
Sbjct: 767 QRMGIDNKEARMLI------EDYFTTFPKVKAYMEQAKEEARQKGYAVTLFGR-RRYLPD 819

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYR 571
            +S+   +     +        G      K   + +    K +     ++L     L + 
Sbjct: 820 INSKNGTVRGFAERNAINAPIQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFS 879

Query: 572 DVGNNRSYLNTTT 584
                +  +    
Sbjct: 880 VYPEEKERVEKIV 892


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 115/649 (17%), Positives = 214/649 (32%), Gaps = 148/649 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + L+  LE+ +      N+ F+R +L  C  + +     +   +LA     P     L A
Sbjct: 461 EALRPILEDNNYPKALQNAKFDRLIL-RCQGIKL--AGVVFDTMLASYVIDPEGSHNLTA 517

Query: 112 VGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + +  L+      +  K+L+         + + D   P       +   YC  DV  T +
Sbjct: 518 LCKEYLEDPKLTAKSYKDLV------SKEQTIADLAIP-------IVANYCGMDVYTTFQ 564

Query: 171 IFKRL----------EPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           +  +L          +PL++         EQ L  +   +  +G  ++    + L+Q ++
Sbjct: 565 LVSKLREKLEELDAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQELE 624

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNK 267
            +   ++Q    +  G   S    ++L   LF    L ++         +T   VL   +
Sbjct: 625 NKLQLIEQTAYEVA-GEEFSLSSPKQLSKLLFETLKLDIKKSRRIQSGYSTDAAVLEKLQ 683

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   +  +R                                 S+         P  
Sbjct: 684 DDHEVVKTILEHR-------------------------------TLSKLKSTYVDALPQL 712

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
             P   R H + +Q  T      +S+P+   I      S  +R   +  EG  +V AD +
Sbjct: 713 VRPDTGRVHTDFNQAATGTGRLSSSNPNLQNIPIRTEFSRQIRKAFLPKEGWLMVSADYS 772

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA +  E   ++A++T +D++  T    F      VT D+R +GK +   + Y 
Sbjct: 773 QIELRILAHLTQEPVLVEAYKTNQDVHTVTAKLLF--EKETVTPDERRLGKTINFGVIYG 830

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
            GA+ F +  S  G++       +      E +    +          + AI   ++ T 
Sbjct: 831 MGAQRFAR--SVEGVSPTQAKLFI------ERFNQRYSRVFEYLNRVKKDAIAQGYVSTI 882

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R     R+                      G+++   K  DV  + +   KN      
Sbjct: 883 LGR-----RRYFK-----------------FEGESVRKLKDSDVQDINLATLKN------ 914

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---- 618
                            +     QL R            +Q  S DI+   M+       
Sbjct: 915 -----------------IGQNDAQLLRAAANAP------IQGSSADIIKVAMVKLHDILK 951

Query: 619 KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                ++L VHDE+V E P  + E     + + M +       +PL  +
Sbjct: 952 DRQARLLLQVHDELVLEVPPDEWEELQHKIKNTMENAVE--LSVPLVVD 998


>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
          Length = 931

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/544 (17%), Positives = 174/544 (31%), Gaps = 87/544 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSA 108
           + L   L+N+    V HN  F++ VL            D  +  ++   V+ + +    +
Sbjct: 405 EQLTPLLKNSKNQKVGHNLKFDKNVLANHGITLNGVAYDTMLESYVLNSVVTKHHIEALS 464

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  +G             + +  +  K  T   +                 +   +  + 
Sbjct: 465 LHYLG-------HSPITLESIAGKGAKQLTFNQI----------GLAEAAPFAAENADII 507

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P           +S  E  L  +   +   G  +D       +Q +      
Sbjct: 508 LRLHQLLWPQLVNAPELANVVSELEVPLSQVLSRMEQTGVLIDSQKLAQQSQSLAERILH 567

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273
           L++ +  +  G   +    ++L+  LF +  L +   T      T + VL       P  
Sbjct: 568 LEETVHEMA-GEAFNLGSTKQLQHILFEKMNLPVIKKTPKGAPSTGEEVLQELALNYPLP 626

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R                               G ++         P     R  
Sbjct: 627 KAIMEYR-------------------------------GLTKLKNTYTDKLPKLIDHRTG 655

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q IT      ++DP+   I         VR   IA  G K+V AD + IE R+
Sbjct: 656 RVHTSYQQAITATGRLSSTDPNLQNIPIRTEEGRKVREAFIARPGYKIVAADYSQIELRI 715

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ +   L AF  G D++  T +  F VA   VT +QR   K +   L Y   A   
Sbjct: 716 MAHLSSDSGLLHAFANGLDVHKATASEVFGVALEHVTSEQRRSSKAINFGLIYGMSAF-- 773

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A    +      H + T      +E      ++MQ+   E A    ++ T   R + 
Sbjct: 774 -GLAKQLNIPRGDAQHYMDT-----YFERYPGVLQYMQDT-REEAKAQGYVKTVFGR-RL 825

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              +  S          +A       G A  II      V      +D++++ +++    
Sbjct: 826 YLPEITSSNGARRAGAERAAINAPMQGTAADIIKLSMLAVDNWIQTQDQSDICMIMQVHD 885

Query: 567 SLVY 570
            L++
Sbjct: 886 ELIF 889



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 603 QAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPD--TDEFNASMLYHLMTS 653
           Q  + DI+   M+           +   +++ VHDE++ E  +   D ++  ++  LM +
Sbjct: 851 QGTAADIIKLSMLAVDNWIQTQDQSDICMIMQVHDELIFEIKEQKVDAYSTKII-ELMEN 909

Query: 654 NPSWAKGLPLKAE 666
             S A  +PL  E
Sbjct: 910 AVSLA--VPLTVE 920


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 110/657 (16%), Positives = 200/657 (30%), Gaps = 139/657 (21%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           F  DD P        +  M   +K   E+  V  + HN  ++  VL    N  I +    
Sbjct: 425 FSDDDTPAHYPQLDFETAM-AEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGINLAPVD 483

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE-----CLYDRNKPN 149
            T+ L+                ++    M+    L   +    T +         +  P 
Sbjct: 484 DTMCLSYVLD----------GGRVERHSMDY---LAGHWLDYTTIKFSDVCGKGAKQIPF 530

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCV 199
              A     +Y   D  +T  ++  L+P  + E          + L  +   + + G  V
Sbjct: 531 SELAPEAALDYAAEDADITLRLWMILKPRLAGEKVASVYERLERPLIPVLAQMENYGITV 590

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT- 258
           D ++   ++         L Q++ +L  G   +    ++L   LF + GL      +T  
Sbjct: 591 DRSILARMSNDFATRMEALAQDILALA-GEDFNIASPKQLGEILFDKMGLQGGKKAKTGA 649

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
                   + L    +++ +                             L +   ++   
Sbjct: 650 YSTSADVLEDLAASGVEIASK---------------------------VLDWRHLAKLKS 682

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373
                     LP   R H     +        +SDP+   I         +R+  IA+EG
Sbjct: 683 TYADALVECILPATGRVHTSFSMVGASTGRLSSSDPNVQNIPIRTSEGRQIRTAFIAAEG 742

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            KL+  D + IE R++A +AGEQ  ++AF+ G D++  T +  F +   Q+  + R   K
Sbjct: 743 CKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSETRRRAK 802

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y   A     +A    +        + +      + +     R   E     A
Sbjct: 803 AINFGIIYGISAF---GLARQLSIPQGEARDYIAS------YFENFPGIRAYMERIKTEA 853

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
            ED F+ T   R +          +       +        G A    KR          
Sbjct: 854 REDGFVETLFGR-RIHITGMAGGSAAHRGFAERQAINAPIQGSAADIIKRA--------- 903

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                ++ +P                                      +QA   DI A+ 
Sbjct: 904 -----MIRIP------------------------------------PALQA--ADIRADM 920

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGL--PLKAEG 667
           ++             HDE++ E P  D  N    +  +M +  +    L  PL AE 
Sbjct: 921 LLQV-----------HDELIFEAPAADADNAVKHITRIMEAAAAPVVDLKVPLVAEA 966


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 109/590 (18%), Positives = 182/590 (30%), Gaps = 151/590 (25%)

Query: 109  LKAVGEALKLSSQKMEEGK------ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
            L A    LKL++  ++  +      ++  +F   E  E   DR      +      +   
Sbjct: 573  LPAPASDLKLAAYLLDPVRNRYYLVDVARQFFGWELEEGPADR----PDDPACRTTQLLG 628

Query: 163  GD----------VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             D          V                E  L  +   + + G  VD      L ++  
Sbjct: 629  RDAALCARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFT 688

Query: 213  VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKL 269
                +L +++  L  G   +    ++L   LF   GL +   T+T       VL +    
Sbjct: 689  RRSQELAEQIYQLA-GETFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAAR 747

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
             P A  V   R          ++ L E +  DGR+                         
Sbjct: 748  HPIAELVLEYRSLVKLQGTY-VDGLAEHIGPDGRV------------------------- 781

Query: 330  PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384
                  H    Q +       ++ P+   I         +R   +A  G +LV AD + I
Sbjct: 782  ------HTTFQQTVAATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQI 835

Query: 385  EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
            E RVLA  +G++  L+AF  G+D++  T +  F V   QVT +QR + K +   L Y   
Sbjct: 836  ELRVLAHYSGDEGLLEAFARGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQT 895

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                 +                       +  DA  F     E +P              
Sbjct: 896  DYGLARALRI-------------------DRADARRFMDRYFERYP-------------- 922

Query: 505  RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                           +   + +   +  ++G+      RR                 +P 
Sbjct: 923  --------------GVKRYMEETIRRARQHGEVTTLLGRR---------------RPVPE 953

Query: 565  GRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
             R  VY    N  R  +NT                   +Q  + DI+   M+   +A   
Sbjct: 954  IRHRVYHIRQNAERVAINTP------------------IQGTAADIMKLAMIRVYRALAG 995

Query: 623  -----DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                  IVL VHDE++ E P+ +    A++L   M      A  +PL  +
Sbjct: 996  EGLRARIVLQVHDELLVEAPEDEVPAVAALLRREMEGAFPLA--VPLVVD 1043


>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
 gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
          Length = 920

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/599 (16%), Positives = 184/599 (30%), Gaps = 86/599 (14%)

Query: 4   LFIDFETRSP--IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L +D ET S   ID    G+    E+      A   +              M  + K   
Sbjct: 350 LSLDTETTSVDAIDAELVGLSFSVEEKEAFYVAISPNREEA--------LNMVNIFKPLY 401

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120
           EN ++  V  N  ++  VLK      I +   +   ++A     P         A  L +
Sbjct: 402 ENEEILKVGQNIKYDYEVLKKY---GITLKGKLFDTMIAHYLIQPELHHNMDYMAETLLN 458

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
            +    +++I    KG+  + + D              +Y   D  +T  +   LEP   
Sbjct: 459 YQTVHIEDIIGP--KGKKQKNMRDLAPAE-------VSDYACEDADITLRLKNALEPKLK 509

Query: 180 ---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                      E  L  +   +   G  +D       ++I      K + E+  L  G  
Sbjct: 510 EVNAESLFWEIEMPLVRVLADMELHGIRLDTEALEETSRIFTERMNKYEAEIYELA-GET 568

Query: 231 SSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
            +    +++   LF +   +     T+T    T + VL S +   P   ++   R     
Sbjct: 569 FNISSPKQVGEILFGKLQIMEKPKKTKTGQFVTSEEVLISLQSKHPIVEKILEYR----- 623

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                     G  +         P    P+    H   +Q +T 
Sbjct: 624 --------------------------GIKKLLSTYIDALPKLVKPQTGHIHTSFNQALTA 657

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R C I         AD + IE R++A ++ ++  ++
Sbjct: 658 TGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMME 717

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ ++     VT  QR   K     + Y         +A    +   
Sbjct: 718 AFRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIYGITTY---GLAQRMDIPNG 774

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L+       ++       +   E   E A    +  T   R ++     +SR + +
Sbjct: 775 EAKELIA------DYFKTFPKVQAYMEEAKEVARRKGYAETIFHR-RRYLADINSRNATV 827

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                +        G      K   V +    ++++    ++L     L +      + 
Sbjct: 828 RGFAERNAINAPIQGSEADIIKVAMVNIHQRFEREQIRSKMILQVHDELNFSVYPEEKE 886


>gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
 gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
          Length = 924

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 107/618 (17%), Positives = 188/618 (30%), Gaps = 101/618 (16%)

Query: 10  TRSPIDLTKCGICKY-AEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENT 64
           T   +D     +  + AE   + L A               D +    + + LK  LEN 
Sbjct: 351 THIAVDTETTSLDVFEAELAGISLCAEA---GKAFFIATTPDALERKEVVKQLKPLLENP 407

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
            +T    N  ++  VLK    +++         +LA     P         AL+   +  
Sbjct: 408 AITKSGQNLKYDMLVLKKY-GIELAP--ISFDTMLASYVLNPDEHHNLDDMALRYLGRTT 464

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
            +  EL        T      R+     E       Y   D  V  ++ + L+     E 
Sbjct: 465 TKYDEL--------TGTGKQRRHI-FEVEK-EALTNYACQDADVAFQLEEVLQAQLQAEP 514

Query: 184 ELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +L  L             T+   G  +D      + +  ++E   L   + +   G   +
Sbjct: 515 QLLALCTTMEFPLVRVLATMEYAGIAIDTEHLARVAETTELELQSLTDNIYA-AAGSSFN 573

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L     T+T       VL       P A  + + R         
Sbjct: 574 IDSPKQLSHVLFTDLSLPTGKSTKTGFSTDVGVLEELAATYPIASDLLSYR--------- 624

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                    +         P    PR  R H   +Q IT     
Sbjct: 625 ----------------------TLQKLKGTYIEALPKIINPRTGRIHTSFNQHITATGRL 662

Query: 350 ITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +S+P+   I     +   +R   I S     L+ AD + IE R+ A ++G++  + AF 
Sbjct: 663 SSSNPNLQNIPVRTALGKEIRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFR 722

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++  T    F     +++ D R   K +   + Y         +A    +      
Sbjct: 723 NGEDIHTATAQVIFGT--EEISSDMRRKAKEVNFGVLYGIQPF---GLAKRLNIPQKEAK 777

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            +++T  A   +    N  R +     E   E  ++ T   R ++     +SR   +   
Sbjct: 778 VIIETYKAK--YPQLFNVLRHII----EEGKEKGYVTTLLGR-RRYIADLNSRNGTVQKA 830

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNT 582
             +A   T   G A    K          +       ++L     L++    + +  L  
Sbjct: 831 AERAAMNTPIQGTAADIIKCAMNLCYQQMQASGMASEMLLQVHDELLFETTDSEKEALT- 889

Query: 583 TTRQLTREYTYGGKLTEN 600
                        KL EN
Sbjct: 890 -------------KLVEN 894


>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
          Length = 926

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/553 (15%), Positives = 166/553 (30%), Gaps = 86/553 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---------LENT 64
           D     +        ++  +F  +          H  P +P  L            LE+ 
Sbjct: 354 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLPRDEVLAKLTPWLEDA 411

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
               +  +  ++  VL         I     TL+ +              AL+    K  
Sbjct: 412 SRKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 469

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-- 182
           + +++  +  +                       EY   D  +T ++ + L P  ++E  
Sbjct: 470 KYEDVAGKGAQQ----------IGFDEVPLDKASEYAAEDADITLQLHRALYPQVAREPG 519

Query: 183 ---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                      +  + + +   G  +D       +  +     +L+QE  +L  G   + 
Sbjct: 520 LMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYALAGG-EFNL 578

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++    F    L +         +T + VL    +  P    +  +R         
Sbjct: 579 GSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 629

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P    P   R H    Q +      
Sbjct: 630 ----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IA  G K+V AD + IE R++A ++ ++  L+AF  
Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G+  +    
Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAKL 784

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +        +    ++    +    E    +   G           + +          
Sbjct: 785 YID--RYFLRYPGVAHYMEETRARAKERGYVETVFGRRL-----WLPEINGGNGPRRQAA 837

Query: 525 HQAFEQTIENGKA 537
            +A       G A
Sbjct: 838 ERAAINAPMQGTA 850


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L++E  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEREAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/706 (16%), Positives = 190/706 (26%), Gaps = 180/706 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-----MPQVL- 57
           + +D ET S            A D  ++  +F             H         PQ L 
Sbjct: 336 IALDTETTSLQ----------AHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLP 385

Query: 58  --------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
                   K  LE+       HN  ++  VL+      I +       +L      P+  
Sbjct: 386 LQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRA---GIELAGIAADSMLLAYCLYPA-- 440

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVT 168
                  K         ++ +   C   +        +    E    +   Y   D  + 
Sbjct: 441 -------KYPPSLDSVAEDYLNYHCTPYSEVAGKGAKQVCFDEVPVSIATPYACEDADIA 493

Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +   L                E  L  +   I   G  VD  +   L+    +   +L
Sbjct: 494 LRLTGLLSAQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAGLSTGFGLRIAEL 553

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274
           + ++ +   G   + +  ++L   LF    +     T++    T Q VL           
Sbjct: 554 ESQIHA-AAGEKFNIQSPKQLGVLLFETLAIPGGKKTKSGQWATGQEVLEKLADEHEVPR 612

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +   R  A                               +         P        R
Sbjct: 613 LILQVRQLA-------------------------------KLKSTYTDALPKLIHRTTGR 641

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H   +Q IT      +SDP+   I         +R   IA EG  L+ AD + IE R++
Sbjct: 642 VHTSFNQAITTTGRLSSSDPNLQNIPIRSAEGREIRKAFIAEEGHTLLAADYSQIELRLM 701

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A  +G+     AF  GED++  T A    +A   V+ + R   K +   + Y   A    
Sbjct: 702 AHFSGDAALCAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSAF--- 758

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A    ++                  +A+ F     E +P                   
Sbjct: 759 GLAKQLNISRG----------------EAQTFIDTYFERYP------------------- 783

Query: 510 WRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                     +   +        E G    +   R  VP +              +G   
Sbjct: 784 ---------SVRGFMDDTLVLAREQGYVETLLGHRVYVPEISSS-----------NGMRR 823

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGY 622
            Y      R+ +N                     Q  + DI+   M      +       
Sbjct: 824 AYA----ERTAINAPL------------------QGSAADIIKVAMIHLHRRLRQEAPAA 861

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL--PLKAE 666
            I+L VHDE++ E P         +  +M      A  L  PL  +
Sbjct: 862 AIILQVHDELIVEAPVD---QIDAVSAIMRQTMEQAVTLEVPLTVD 904


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/557 (16%), Positives = 188/557 (33%), Gaps = 90/557 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPV---MP----Q 55
           + ID ET S           +A +  ++  +    +    +  D  H      MP    Q
Sbjct: 318 IAIDTETTSE----------HAVEADLVGISIAIGEQAWYVPIDHAHTDTHRNMPTADVQ 367

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGE 114
            L  AL+ +D+ +V  N  ++  VL+   ++ +P  R   T++ +        +      
Sbjct: 368 KLITALDRSDLLLVGQNIKYDLIVLQRH-DMALPQPRLFDTMIASYLLDANRRSHGLDQL 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A++  S +M   K+++             D + P           Y   D  +T  ++  
Sbjct: 427 AVEFLSHEMIAFKDVV------PKGSTFRDVDIPTAA-------RYAGEDAAITLALYNL 473

Query: 175 LEPLSSKE-QELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
             P   +E  EL++        +   +   G  VD  +   L++       +L++++  L
Sbjct: 474 FAPRIEQEYHELFHAIEMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEKIYEL 533

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L T LF + G+     T+T     +S  + L PQ             
Sbjct: 534 A-GEAFNINSPKQLATLLFEKMGIPPVKKTKTGYSTDVSVLEALAPQ------------- 579

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++  ++             Q+   S+              P   R H   +Q + +
Sbjct: 580 ---YEIANVLT------------QYRMVSKLLSTYVNALSELINPWTGRIHTSFNQTVAN 624

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         VR   + + G   V AD + IE R+ A ++G++  LK
Sbjct: 625 TGRLSSSDPNLQNIPIRTEEGREVRKAFVPAPGFCFVAADYSQIELRIAAHLSGDESMLK 684

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +F   +D++  T    F  +      + R + K +   + Y   A    K++   G+   
Sbjct: 685 SFAEEKDIHAQTADAIFGSSE----PNYRRMAKAVNFGILYGISAF---KLSRDLGMTPK 737

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L+ +      +   + +         EH       G      ++     +SR   +
Sbjct: 738 EGQALIDS--YFLRYPGVKAYIDHQIAFAREHGYAQTLYGR-----RRYLPDINSRNRNI 790

Query: 521 WNELHQAFEQTIENGKA 537
                +        G +
Sbjct: 791 REAAERNAVNMPIQGTS 807


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/635 (17%), Positives = 194/635 (30%), Gaps = 141/635 (22%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + +      N+ ++R +L       +P+   +   +LA        L+       L  
Sbjct: 457 LASAEHPKALQNAKYDRLIL---LRHGLPLGGVVMDTLLADY------LRDANAKHGLEV 507

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                            ++  L  +              YC  DV VTR +   L     
Sbjct: 508 LAQRN------LGFTPTSYGELVPKGASFAAVPVEAAALYCGMDVHVTRRLSPLLRRQLE 561

Query: 181 K------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           +            E  L  +   +   G  +D A    L++ +     +L+ E  +   G
Sbjct: 562 ELGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYLQELSEELGATLARLEAEARAA-AG 620

Query: 229 LVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +  +    ++L   LF   GL  +    T+T   T   VL   +   P    V  +R   
Sbjct: 621 VEFNLASPKQLGELLFDTLGLDRKKSRRTKTGWSTDANVLEKLEDDHPVVPLVLEHR--- 677

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                         S+         P    P   R H + +Q +
Sbjct: 678 ----------------------------TLSKLKSTYVDALPSLMEPETGRVHTDFNQAV 709

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +S+P+   I      S  +R   +  EG  L+ AD + IE R+L  + GE+  
Sbjct: 710 TATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWSLISADYSQIELRILTHLCGEEVL 769

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A+  G+D++  T      +    VT D+R +GK +   + Y  GA   Q+ A  TG++
Sbjct: 770 VEAYRNGDDVHALTARLL--LDKEAVTPDERRLGKTINFGVIYGMGA---QRFARETGVS 824

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +     +  +   + +     F     E     A+   ++ T   R +           
Sbjct: 825 QSQAKDFL--SRYKQRYPKVFAFL----ELQERLALSRGYVETILGRRRP---------- 868

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                              D + L   L         ++    +
Sbjct: 869 --------------------------------FAFDPSGLGRHLGKD----PMEIDLEVA 892

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
                  Q  R            +Q  S DI+   M++  +A         ++L VHDE+
Sbjct: 893 RRGGLEAQQLRAAANAP------IQGSSADIIKLAMVHLQQALSQQALPARLLLQVHDEL 946

Query: 633 VCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E  P+  +    +    M         +PL  E
Sbjct: 947 VLEAAPEALDQVCDLTRQTMERAVQ--LTVPLVVE 979


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 120/671 (17%), Positives = 216/671 (32%), Gaps = 144/671 (21%)

Query: 31  ILFAFGFDDHPVELWDCVH--DPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83
           +   +G     V      H     +P       L+  LE      V  N+ F+R VL   
Sbjct: 377 LGCCWGAAPDQVAYLPLGHKEGQNLPLEETLAALRPILEGDRYPKVLQNAKFDRLVL-RF 435

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK--GETHEC 141
             + +     +   +LA     P A      +  L        K+L  R+     +++  
Sbjct: 436 QGIQL--RGVVFDTMLASYVINPEA------SHNL--------KDLCQRYLPLQAQSYRT 479

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWY-----LDQTI 192
           L  +++     +     +YC  DV  T  + ++LE    P   +           +   +
Sbjct: 480 LVGKDQTLADLSPATVAQYCGLDVHTTYLLKEKLEADLTPRLRQLLLEVELPLEPILAEM 539

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  +D      L+Q ++ +   L Q+      G   +    ++L   LF   GL  +
Sbjct: 540 EATGIRIDSDYLRQLSQELEQQLAALQQQAWD-AVGQPFNLASPKQLSELLFGTLGLDTK 598

Query: 253 DLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
              +T     T    L   +   P    + ++R  A                        
Sbjct: 599 KTHKTKLGYSTDAATLEKLRGDHPVIDLILSHRTLA------------------------ 634

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
                  +       V P    P   R H E +Q +T      +S P+   I      S 
Sbjct: 635 -------KLKSTYVDVLPTLVRPDTGRVHTEFNQAVTATGRLSSSSPNLQNIPIRTEFSR 687

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   I   G  LV AD + IE R+LA ++ E   L A++ G D++  T    F +   
Sbjct: 688 QIRRAFIPEAGWLLVAADYSQIELRILAHLSQEPALLAAYQEGADVHRLTAQ--FLLEKT 745

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            ++  +R +GK++   + Y  G    Q+ A   G+++      ++       +    ++ 
Sbjct: 746 DISSSERRLGKMINFGVIYGMGP---QRFAREAGVSVAEAKVFIQRFYNR--YPRVFDYL 800

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
           R M+         +                                         I+ R+
Sbjct: 801 RQMERLALSQGYVE----------------------------------------TILGRR 820

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           R      Y   +   L   L      V  DV  ++  ++   R L R            +
Sbjct: 821 R------YFAFESRELQ-SLRGKPLDVLADVDPSKLKMSNYERGLLRAAANAP------I 867

Query: 603 QAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSW 657
           Q  S DI+   M+            ++L VHDE+V E TP+  E   + +  +M++    
Sbjct: 868 QGSSADIIKCAMVKLAPLLPPEKARLLLQVHDELVLEMTPEAWEHLQTTIPEVMSTAVP- 926

Query: 658 AKGLPLKAEGY 668
              +PL  + Y
Sbjct: 927 -LSVPLAVDIY 936


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/539 (16%), Positives = 177/539 (32%), Gaps = 71/539 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
            ++  +LK    ++  + VAHN  F+  VL     + I +++   T+++A          
Sbjct: 368 EIVLDILKPIFVDSQKSKVAHNFKFDEKVLSKY-GVKI-VNQVNDTMIMAYVLKSSGKHD 425

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169
                  LS + +  G E IA      T      RN+    +       +Y   D  +T 
Sbjct: 426 MDS----LSKEHL--GIEPIAY-----TTLAGTGRNQLTLDQIDIEKVAKYAAEDADITF 474

Query: 170 EIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKL 218
            ++     +   ++ L+ L              +   G  +D       +  ++    +L
Sbjct: 475 RLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMERIGVKIDATKLIEQSANLEDSIKEL 534

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           + +   L  G   +     +L+  LF + GL     T                +  ++  
Sbjct: 535 EIKCYDLA-GQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIAA 593

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
             M+                           +   S+         P   L    R H  
Sbjct: 594 LIMK---------------------------YRHLSKLKNTYTDKLPKM-LDVNGRVHTS 625

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   +A +   +V AD + IE R++A ++
Sbjct: 626 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFVAEQEFCVVAADYSQIELRIMAHLS 685

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LKAF  G D++  T A    ++   VT +QR   K +   L Y   A     +A 
Sbjct: 686 KDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAF---GLAK 742

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +      
Sbjct: 743 QLEIPRGEAQEYIDVYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPDI 795

Query: 514 HSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            S+     N   +A       G A  II +   DV  + +++  +++ +++     LV+
Sbjct: 796 SSKNVIQRNAAERAAINAPMQGTAADIIKKAMIDVNTMILREYNDDIKMVMQVHDELVF 854


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 130/699 (18%), Positives = 222/699 (31%), Gaps = 173/699 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------LK 58
           +D ET S   +          D  +I F+              H              LK
Sbjct: 321 LDLETDSLSPI----------DAEIIGFSISLPSKESYYVPLAHKNGPNVDKKSALNNLK 370

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEAL 116
             LEN    I+  N  ++ +VLK      I   R     ++A     P          A+
Sbjct: 371 SILENQSAKIIGQNLKYDYSVLKMH---GIEPVRPSFDTMIAAYLLNPDEKRFNLDELAM 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--- 173
           K  + KM   +EL                       +     +Y   D  +TR +++   
Sbjct: 428 KFLNYKMISFEELFK-------DTSPLFGAVTFADVSVEDATKYSAEDADITRRLYEILN 480

Query: 174 -------RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                   LE L   E  L  +   +   G  +++     L+        +L Q++ +  
Sbjct: 481 IKLHEADLLEVLEKIEMPLIPVLVHMELEGVYMNIDYLKDLSSKYAARMNELSQQIYNHA 540

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    +++   LF +  +     T T    T   VL    +  P           
Sbjct: 541 -GEAFNLNSPKQVAHILFDKLKIQPTKKTSTGEPSTRADVLEELSEEHPIV--------- 590

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                 R  L++    +       V P    P   R H    Q 
Sbjct: 591 ----------------------RLILEYRKYQKIKSTYLDVLPKLVHPETGRIHSSFHQT 628

Query: 343 ITHLPTSITSDPDPLQIIS-----DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQ 396
            T      +SDP+   + S       +R  V+      K++ AD + IE RVLA ++ +Q
Sbjct: 629 GTATGRLSSSDPNLQNLPSKQEESREIRKAVVPQRDSWKILSADYSQIELRVLAHLSNDQ 688

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF+  ED++  T +R F V   QVT   R+IGK++  ++ Y        +    TG
Sbjct: 689 NLIEAFKKDEDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSPYGLSQ---RTG 745

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+                ++ A+ F       +P               VK+ + +  S 
Sbjct: 746 LS----------------YDQAQKFIGEYFSLYP--------------SVKEYFAKIVS- 774

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS--LVYRDVG 574
                      + +T    + +  R+R                  +P  RS     R  G
Sbjct: 775 -----------YAKTHGYVRTMFGRRR-----------------EVPQLRSKNASVRQEG 806

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628
             R  +NT                   +Q  + DI+   M+N        +    ++L V
Sbjct: 807 E-RIAINTP------------------IQGTAADIMKLAMINLYDKIKQMRLQSKMILQV 847

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E PD + E   +++   M +       +PLK +
Sbjct: 848 HDELVFEVPDEEVEIVKNLVRDSMENVV--RLSVPLKVD 884


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/612 (15%), Positives = 188/612 (30%), Gaps = 79/612 (12%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQVLKEALENTDVTI 68
           D    G        C  L    F     + W      D      + Q  K   EN  +  
Sbjct: 360 DTETTGTDA----NCCELVGLSFSVEKGQAWYVPASADQKEAHALVQQFKPVFENPAIGK 415

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           +  N  F+  VL      D+ +   +   +LA     P     +     LS   +     
Sbjct: 416 IGQNLKFDILVLSWY---DVKVAGELFDTMLAHYLIDPETRHGMD---VLSENYLGYTPV 469

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179
            I      +    L  R         +   +Y   D  +T ++ +  EP+          
Sbjct: 470 SITTLIGPKGKGQLNMR-----DVDPKTVSDYAAEDADITLQLKEIFEPMLIKVEADKLA 524

Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +   +   G  +DV      +  +  E   L+  +     G+  +    ++
Sbjct: 525 HEVEFPLVPVLVDMERVGVRIDVKALSDFSLAIQNEVQILEARIYEKA-GVPFNIASPKQ 583

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   LF +                     +L P+A +    + +     ++ L    + +
Sbjct: 584 LGEVLFDKL--------------------QLDPKAKKTKTGQYQTGEDVLMALANKSDIV 623

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                    L++    +         P     +  R H   +Q +       +++P+   
Sbjct: 624 QD------ILEYRQLQKLRSTYVDALPQLINTKTGRVHTSYNQAVAATGRLSSNNPNLQN 677

Query: 359 II-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         VR   IA +    ++ AD + IE R++A ++ +   L AF  G D++  T
Sbjct: 678 IPIRTERGREVRKAFIARDDEHVILSADYSQIELRLIAEISKDANMLDAFAKGLDIHTAT 737

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            A+ + V   +VT +QR   K +   + Y   A    +   + G+     A +++     
Sbjct: 738 AAKVYGVGLEEVTGNQRRNAKAVNFGIIYGQSAFGLSQ---SLGIPRREAADMIEQYFIQ 794

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                     R    N    A E  ++ T  +R ++  R  +S  + +     +      
Sbjct: 795 YP------GIRDYMNNTIAFAKEHGYVETLLKR-RRYLRDINSANATVRGFAERNAINAP 847

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLN--TTTRQLT 588
             G A    K   +  ++    + NL   + +     LV+    N  +        R   
Sbjct: 848 IQGSAADLIKIAMIH-IHQDIQQANLKGKMTMQVHDELVFDVPRNEVAAFKEIIEARMKG 906

Query: 589 REYTYGGKLTEN 600
              T    + E 
Sbjct: 907 ALKTEVPIVVEI 918


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 116/683 (16%), Positives = 202/683 (29%), Gaps = 152/683 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64
           D     +        ++  +F  +          H  P MP+ L         K  LE+ 
Sbjct: 348 DTETTALDPMV--ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVLARLKSWLESP 405

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           D   V  +  ++  VL         I     TL+ +              AL+    K  
Sbjct: 406 DRKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 463

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + +++  +  K    + +       +                +T ++ + L P  ++E  
Sbjct: 464 KYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHRALYPQIAREPG 513

Query: 185 LWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L  + + I              G  +D A     +  +      L+ +  +L  G   + 
Sbjct: 514 LERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDLEAQAYALAGG-EFNL 572

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++    F +  L +         +T + VL    +  P    +  +R         
Sbjct: 573 GSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 623

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P    P   R H    Q +      
Sbjct: 624 ----------------------GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 661

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IA+ G ++V AD + IE R++A ++G+   L+AF  
Sbjct: 662 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 721

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS  G+  +    
Sbjct: 722 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAF---GLASNLGITRDAAKL 778

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +    A               E+    A E  ++ T   R +    + +          
Sbjct: 779 YIDRYFARYP------GVAQYMEDTRATAKERGYVETVFGR-RLWLPEINGGNGPRRQAA 831

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A       G A    K   + +         L                          
Sbjct: 832 ERAAINAPMQGTAADLIKLSMIAV------DGWL-------------------------- 859

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643
                                +RD LA  M          ++ VHDE+V E PD +    
Sbjct: 860 ---------------------TRDKLASRM----------IMQVHDELVLEVPDDELSLV 888

Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666
              L  +M         +PL AE
Sbjct: 889 REKLPEMMCGVAK--LKVPLVAE 909


>gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
          Length = 897

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 161/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +           E  L  +   +   G  +D       +  ++    +L+ + 
Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +     +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P   L    R H  
Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA +G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LKAF    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
          Length = 926

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/553 (15%), Positives = 163/553 (29%), Gaps = 86/553 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---------LENT 64
           D     +        ++  +F  +          H  P MP  L            LE+ 
Sbjct: 354 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
               +  +  ++  VL         I     TL+ +              AL+    +  
Sbjct: 412 SKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVRTI 469

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + +++  +  +                       EY   D  +T ++   L P  ++E  
Sbjct: 470 KYEDVAGKGAQQ----------IGFDEVPLEQASEYAAEDADITLQLHHALYPQIAREPG 519

Query: 185 LW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L             + + +   G  +D       +  +     +L+Q+   L  G   + 
Sbjct: 520 LARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEIATRLIELEQQAYGLAGG-EFNL 578

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++    F    L +         +T + VL    +  P    +  +R         
Sbjct: 579 GSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 629

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P    P   R H    Q +      
Sbjct: 630 ----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IA  G K+V AD + IE R++A ++ ++  L+AF  
Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAN 727

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G+  +    
Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAKL 784

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +        +     +    +    E    +   G           + +          
Sbjct: 785 YID--RYFLRYPGVARYMEETRARAKEKGYVETVFGRRL-----WLPEINGGNGPRRQAA 837

Query: 525 HQAFEQTIENGKA 537
            +A       G A
Sbjct: 838 ERAAINAPMQGTA 850


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 110/693 (15%), Positives = 213/693 (30%), Gaps = 165/693 (23%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH--------PV-----ELWDCVHDPVMPQVLKEA 60
           IDL   G+    +++     A+             PV      +   +    + Q LK  
Sbjct: 379 IDLETTGLDPLRDEIVGWAIAWAAQHGQPGRAVYLPVLGPPGSV--LLDGTAVVQTLKPI 436

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LEN    ++  N  F+   ++      I         ++         L A   +  L  
Sbjct: 437 LENPQCQLINQNVKFDLLAMRKV---GIRPATIGLDTMVGDYL-----LDAGARSHNLEV 488

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVT--------VTREI 171
                G++ ++      +      +N+    +       EY   D          +  ++
Sbjct: 489 L----GQKYLSAATIPISDLLGSGKNQKTMNQIEIERVAEYATEDAELVVRMAPIIESQL 544

Query: 172 FK--RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +    +     E+ L  +   +  +G  VDV      +Q + +   +L  E+  L  G 
Sbjct: 545 QEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQSQELSITLARLMSEIHELA-GR 603

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +     +L+  LF E  L ++  T+T   T Q VL     L P   ++  +R      
Sbjct: 604 EFNIDSPMQLRKILFEELKLPVQKKTKTGPSTDQEVLELLAPLHPLPAKITEHR------ 657

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                      ++         P    P+  R H   +Q++   
Sbjct: 658 -------------------------HLTKLKGTYLDALPLLVHPQSGRIHTSFNQVVAAT 692

Query: 347 PTSITSDPDPLQII-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +SDP+   I         +R   +      +LV AD + IE R+LA  + +   + 
Sbjct: 693 GRLSSSDPNLQNIPIRTPEGSRIRRAFVSCDPEWRLVCADYSQIELRMLAHFSQDPALVS 752

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE GED++    A+   VA   VT D R I K +   + Y         +++  G++  
Sbjct: 753 AFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMYGQSPY---GLSAALGISRE 809

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +                         +A    F+    +                
Sbjct: 810 AATTFIDEYFTR-------------------YAGVTTFMENVLDECL------------- 837

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                          + I+ R+R    +   ++   N        R++        R+ +
Sbjct: 838 ----------ATGYARTILGRRRPIEGVRGPRERNRN--------RNMA------ERTGI 873

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVC 634
           NT                  ++Q  + D++   M+              ++L +HDE+V 
Sbjct: 874 NT------------------VIQGSAADLIKMAMIRVHHRLERENHPGQLLLQIHDELVL 915

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           E P    E   +++   MT        +PL+ +
Sbjct: 916 EAPAHLAEELGALVSEEMTKALP--LDVPLEVD 946


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/631 (16%), Positives = 203/631 (32%), Gaps = 140/631 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L++     ++T+V HN  F+  VL A   +       I   ++A     P+A      +L
Sbjct: 405 LEKLFAEKELTLVMHNGKFDLEVLAAN-GMSAKTECKIFDTMIAAWLLNPAASGKSPYSL 463

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +  ++             KG   + +  +N+           +Y   D   T +++  L+
Sbjct: 464 EFLAET--------KLGLKGIEFKDIVQKNQTFADVPLEKAFKYGAEDSDFTLQLYYLLK 515

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               K          E ++  +  ++  +G  +D    +     + V  ++ ++E+    
Sbjct: 516 DEIKKSNLEKLFYEMEMKVLPILVSMEIQGIHLDKKKLNEYKDELAVLISEKEKEIYKEA 575

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G   +    ++L+  LF +  L     T+T      +  ++L                 
Sbjct: 576 -GCEFNIASPKQLQEILFEKRNLPHGKKTKTGYSTDTAVLEELVFSTNDPLP-------- 626

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                             +  L +   ++         P     +  R H    Q  T  
Sbjct: 627 ------------------KMILDYRSYTKLQSTYVEALPLLAD-KNGRIHTSFLQTGTAT 667

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + DP+   I         +RS   A  G  L+ AD + IE  VLA ++G++    A
Sbjct: 668 GRLSSRDPNLQNIPVRDESGRRIRSAFTAVPGTVLISADYSQIELVVLAHLSGDKNLCSA 727

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++ +T A  + ++P QV  +QR   K +   + Y   A    ++A+   ++   
Sbjct: 728 FINGIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAF---RLANELNISRTE 784

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
             + +        + D + F    +    E+   +                         
Sbjct: 785 AKNFID--QYFSTYSDVKKFLDETKRMARENGYVE------------------------- 817

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                            I  +RR +P +          ++L           G  R  +N
Sbjct: 818 ----------------TITGRRRYIPEIKSSSK-----IVLQ----------GAERIAIN 846

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
           T                   +Q  + DI+   M+    A      G  ++L VHDE++ E
Sbjct: 847 TP------------------IQGSAADIVKTAMIKVQAALEKSGTGAKMLLQVHDELIFE 888

Query: 636 TPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
            P+ +  NA  +    M +       +PL+ 
Sbjct: 889 CPEDNAGNAISIIQREMENAVQ--LKIPLRV 917


>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
 gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
          Length = 890

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 127/677 (18%), Positives = 207/677 (30%), Gaps = 178/677 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--------VELWDCVHDPVMP 54
            L ID ET S   +        A+     L  F     P           W    +P  P
Sbjct: 315 QLAIDTETTSLDPIR-------AD-----LVGFSLCVSPGLAYYAPLAHDWP-ADEPQAP 361

Query: 55  -----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
                 +L +AL +  +  +  N  ++  VL+      + +   +   ++A     P+  
Sbjct: 362 RRQALDLLGQALADPGLLKIGQNLKYDLNVLRRA---GLSVAGPLFDTMVADYLLNPAK- 417

Query: 110 KAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                +  L +   E  G+ +I      E       +              Y   D  V 
Sbjct: 418 ----ASHGLEAIAAEHLGRGVIGF----EEAVGGKGKGFAQAPP--ERAVPYAAEDADVA 467

Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            +  + L P   +          E  L  L   +   G  +D      L+  +D      
Sbjct: 468 LQAAQALGPKLDEADLRRLFDELEMPLTPLLAKMERYGVLIDAEELGRLSAELDQALAAG 527

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQA 273
           +Q++ +L  G   +    ++L   LF E GL     T+      T   VL+      P  
Sbjct: 528 EQKIYALA-GHEFNINSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHPLP 586

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +V   R  A                               +         P    P   
Sbjct: 587 AEVLAYRANA-------------------------------KLKSTYVDALPALINPDTG 615

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q +T      +SDP+   I     +   +R C + + G+ LV AD + IE RV
Sbjct: 616 RVHTSFNQCVTATGRLSSSDPNLQNIPVRGELGRRMRGCFVPAPGRLLVSADYSQIELRV 675

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ +   L+    G D++  T AR F+V P  VT++ R   K +   + Y  G  AF
Sbjct: 676 LAHLSQDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLY--GMSAF 733

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                                             R  +E     A  +  I     R + 
Sbjct: 734 ----------------------------------RLAREQGVSRAEAEDIIARYLGRYQG 759

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
             R +   +S+                  I+ R+R                  LP     
Sbjct: 760 VARFQQQNLSQCRQ---------RGYVTTILGRRR-----------------FLP----- 788

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------Y 622
                      +N++ RQ  RE      L   I Q  + DI+   M+   +         
Sbjct: 789 ----------AINSSDRQ-AREAAERVALNTPI-QGSAADIIKLAMLRVDEMLTRHYPDS 836

Query: 623 DIVLTVHDEIVCETPDT 639
            ++L VHDE+V ETP+ 
Sbjct: 837 PMILQVHDELVFETPEG 853


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 163/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +++ L+ L              +   G  +D A     +  ++    +L+ + 
Sbjct: 480 HFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +     +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKMGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          +   S+         P   L    R H  
Sbjct: 599 -------------------------------YRHLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA  G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LKAF    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217]
 gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217]
          Length = 936

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/654 (15%), Positives = 181/654 (27%), Gaps = 157/654 (24%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D + +  MP       LK  LE+  +  +  N  ++  +  A     I +     T++++
Sbjct: 398 DKMAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFAA---RGITVEPIDDTMLMS 454

Query: 101 RSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
            +             + +         K L+       T            R       +
Sbjct: 455 YALHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVT----------FDRVPVDEAVK 504

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++   +P   +          E+ L  +   +   G  VD A    ++ 
Sbjct: 505 YAAEDADITLRLWLTFKPQLHRARVTTVYETLERPLVPVLAQMERYGVKVDRATLRAMSG 564

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L  G   +    ++L   LF E GL   +  +T    T   VL  
Sbjct: 565 KFAQKMAALESEIHELA-GRSFNVGSPKQLGEILFDEMGLSGGEKGKTGAYATGADVLED 623

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R                                 S+          
Sbjct: 624 LATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQ 652

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
               P   R H    Q   +     ++DP+   I         +R   +A+ G +LV  D
Sbjct: 653 DHIDPDTGRVHTSYVQAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAASGHRLVSLD 712

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +A  +   +AF  G D++  T +  FNV   Q+T + R   K +   + 
Sbjct: 713 YSQIELRILAHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAINFGVI 772

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y        +                          +A+ F     E  P          
Sbjct: 773 YGISGFGLARNLRI-------------------PRSEAQGFIDRYFERFP---------- 803

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                +K                              +   K          +      +
Sbjct: 804 ----GIKDYMDA------------------------TVAFAKEHGYVQTLFGRK-----I 830

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616
             P   +   R     R+ +N                    +Q  + DI+   M+     
Sbjct: 831 HTPEISAKGPRAGFARRAAINAP------------------IQGSAADIIRRAMIRMPDA 872

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667
                  ++L VHDE++ E  +        +   +M    S A    +PL  + 
Sbjct: 873 IEGLPCKMLLQVHDELIFEVAEEATDRLIEIARDVMQGAASPAVHLDVPLVVDA 926


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 161/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TVIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +           E  L  +   +   G  +D       +  ++    +L+ + 
Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +     +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P   L    R H  
Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA +G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LKAF    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 116/683 (16%), Positives = 202/683 (29%), Gaps = 152/683 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64
           D     +        ++  +F  +          H  P MP+ L         K  LE+ 
Sbjct: 345 DTETTALDPMV--ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVLARLKPWLESP 402

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           D   V  +  ++  VL         I     TL+ +              AL+    K  
Sbjct: 403 DRKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 460

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + +++  +  K    + +       +                +T ++ + L P  ++E  
Sbjct: 461 KYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHRALYPQIAREPG 510

Query: 185 LWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L  + + I              G  +D A     +  +      L+ +  +L  G   + 
Sbjct: 511 LERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDLEAQAYALAGG-EFNL 569

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++    F +  L +         +T + VL    +  P    +  +R         
Sbjct: 570 GSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 620

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P    P   R H    Q +      
Sbjct: 621 ----------------------GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 658

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IA+ G ++V AD + IE R++A ++G+   L+AF  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 718

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS  G+  +    
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAF---GLASNLGITRDAAKL 775

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +    A               E+    A E  ++ T   R +    + +          
Sbjct: 776 YIDRYFARYP------GVAQYMEDTRATAKERGYVETVFGR-RLWLPEINGGNGPRRQAA 828

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A       G A    K   + +         L                          
Sbjct: 829 ERAAINAPMQGTAADLIKLSMIAV------DGWL-------------------------- 856

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643
                                +RD LA  M          ++ VHDE+V E PD +    
Sbjct: 857 ---------------------TRDKLASRM----------IMQVHDELVLEVPDDELSLV 885

Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666
              L  +M         +PL AE
Sbjct: 886 REKLPEMMCGVAK--LKVPLVAE 906


>gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 542

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 108/637 (16%), Positives = 198/637 (31%), Gaps = 153/637 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115
           LK  LEN     +  +  ++R V     N  I +  +   T++ +              A
Sbjct: 21  LKPWLENPQALKLVQHIKYDRHV---FANHGIEVQGYAHDTMLQSYVLEADKPHGLASLA 77

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +   +     ++L    C    ++  +D      +       EY   D   T ++   L
Sbjct: 78  ERHLGRSGISFEDL----CGKGANQISFD------QVDIAKAAEYACEDSDQTLDVHLVL 127

Query: 176 EPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P      +L ++ +           I   G  +D       +  +     +L+ E   +
Sbjct: 128 WPQIEANDKLKFIYELEIASSEALYRIERNGVLIDAPTLAAQSHELGQRILQLETEAYEI 187

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L    F + G+ +   T T    T + VL    +  P   ++  +R 
Sbjct: 188 A-GQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRS 246

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            A             A                               LPR  R H    Q
Sbjct: 247 LAKLKGTYTDKLAQLA-------------------------------LPRTGRVHTHYAQ 275

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         VR   +A+ G  +  AD + IE R++A ++ + 
Sbjct: 276 AVAVTGRLSSNDPNLQNIPIRTAEGRRVREAFVAAPGCVIASADYSQIELRIMAHISDDP 335

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  G D++  T A  F V   QV+ +QR   KV+   L Y   A     +A   G
Sbjct: 336 ALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKVINFGLIYGMSAF---GLARNLG 392

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                   A+N+ +   E +P                          
Sbjct: 393 IDNTA----------------AKNYIQRYFERYP-------------------------- 410

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                        +        +A+++  V  V+              GR L    + N 
Sbjct: 411 -----------GVKAYMESTRELAKRQGYVETVF--------------GRRLQLAGIKNA 445

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHD 630
           +         L R            +Q  + D++   M      ++A      +++ VHD
Sbjct: 446 K---GAQLAGLERAAINAP------MQGTAADLIKLSMVKVQQVLDAQNKSTKMIMQVHD 496

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E P  + ++  + +  LM         +PL AE
Sbjct: 497 ELVFEVPQDEVDWVRTEIPSLMAGVAE--LKVPLLAE 531


>gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated
           bacterium]
          Length = 206

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 129/206 (62%), Gaps = 2/206 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +D  PV+LWD      +P  L + 
Sbjct: 1   MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL+   
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K EEGK LIARFCKG      YD  + NH +AW LF EYCK DV  TRE+FK L PL
Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALA 204
           + +E+ LW LDQ INDRGY +D+ L 
Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDLV 206


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/513 (17%), Positives = 163/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +++ L+ L              +   G  +D A     +  ++    +L+ + 
Sbjct: 480 HFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSVSLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +     +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P   L    R H  
Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA  G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LKAF    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1]
 gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1]
          Length = 923

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 102/601 (16%), Positives = 185/601 (30%), Gaps = 99/601 (16%)

Query: 6   IDFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           +D ET S   +     G+   +E      + F   +   PV+L           +L+  L
Sbjct: 347 LDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPLL 402

Query: 62  ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           E+  V  V  +  ++  VL+        +  D  +  ++ T   AR +    A + +G  
Sbjct: 403 EDPAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYE 462

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                  + +G + I                 P      +   +Y   D  +T  +   L
Sbjct: 463 TMKYVDLVGKGAKQI-----------------PFSHVGVQEATQYAAEDADITLRLHCVL 505

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P               E  L  + + I   G  +D    +  +  +        Q+   
Sbjct: 506 APKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMD 565

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF E  L +         +T +  L +               
Sbjct: 566 LA-GRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP------- 617

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   R  L++   ++         P    P   R H    
Sbjct: 618 ------------------------RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYH 653

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q         +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 654 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++    A  F     +VT ++R   K +   L Y   A     +A   
Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAF---GLARQL 770

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +        + D     R   EN  + A +  ++ T   R +       S
Sbjct: 771 GISRGEAQDYIA------LYFDRFAGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIAS 823

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    KR  V +         L +     R+L+   V +
Sbjct: 824 GNQTQRAGAERAAINAPMQGTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHD 877

Query: 576 N 576
            
Sbjct: 878 E 878



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 18/172 (10%)

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN- 556
             G   + V    R+    ++        AF    + G  I   + +D   +Y  +    
Sbjct: 734 VFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLG--ISRGEAQDYIALYFDRFAGV 791

Query: 557 --NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILA 611
              +       R   Y + V   R YLN+     Q  R            +Q  + DI+ 
Sbjct: 792 RDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA-AINAPMQGTAADIIK 850

Query: 612 EGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN 654
             M+           +    ++L VHDE+V E  +         +   M + 
Sbjct: 851 RAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/561 (16%), Positives = 165/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L +     +  +  ++  VL         I     TL+ +              AL
Sbjct: 401 LTPWLGDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508

Query: 177 PLSSKEQEL--WYLDQT---------INDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L   Y D           +   G  +D       +  +      L+QE  +L
Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 568

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847


>gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
 gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
          Length = 946

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 114/682 (16%), Positives = 204/682 (29%), Gaps = 172/682 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV------L 57
           L +D ET S             +     L        P + W                 L
Sbjct: 375 LAVDTETTS------------LDTFQAELVGISLSIKPKQAWFVYFGKGGVDRRVALDML 422

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEAL 116
           K  LEN  +     N  ++  VLK      I I+      +LA     P A       AL
Sbjct: 423 KPVLENPSLRKTGQNLKYDLLVLKKY---GIDINPVAFDTMLASYVLDPEAKHNLDDLAL 479

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +  S K     EL+A   K  +   +                +Y   D  +   + +  +
Sbjct: 480 RHLSIKTTTYDELVADGKKKMSILDVPPGEL----------SDYACQDADLALRLQEVFK 529

Query: 177 PLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               +E++L +L + I              G  +D          V  +  +L +++   
Sbjct: 530 EKLLQEKDLLWLCENIEFPLVPVLATMEYHGISIDTDHLKKTETTVSKQIGQLSEKIFE- 588

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282
             G V +    ++L   LF   GL     T+T      +VL     + P A  +   R  
Sbjct: 589 ASGRVFNLDSPKQLAHILFDILGLPSGKATKTGFSTNVQVLEDLAPIHPVAQDLLEYRSL 648

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                           +         P    P   + H   +Q 
Sbjct: 649 -------------------------------QKLRNTYIEALPKMINPLTGKLHTSFNQH 677

Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396
           +T      +S P+   I     I   +R   I S  +  L+ AD + IE RV A ++G++
Sbjct: 678 VTATGRLSSSHPNLQNIPIRTLIGKEIRRAFIPSNPENLLLSADYSQIELRVAAEISGDE 737

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF   ED++  T    FN    ++T + R   K +   + Y         ++    
Sbjct: 738 KLMEAFRNREDIHSATARTIFNTT--EITPEMRRKAKEVNFGVLYGIMPF---GLSRRLN 792

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++ N   +++ T    E++    N  + +         E  ++ T   R     R+    
Sbjct: 793 ISRNEAKNIIDT--YTEKYPGIFNALQQIIS----DGKERGYVSTLLGR-----RRYIPD 841

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++     + +A                                                 
Sbjct: 842 LNSRNKNMQKAA-----------------------------------------------E 854

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHD 630
           R+ +NT                   +Q  + DI+   M      +   K    ++L VHD
Sbjct: 855 RAAMNTP------------------IQGTAADIIKCAMNLCSTQLRLHKMKSVMLLQVHD 896

Query: 631 EIVCETPDTDEFNASML-YHLM 651
           E++ ETP+ ++     L   +M
Sbjct: 897 ELLFETPENEKHRLKTLVEEVM 918


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 53  DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 102

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 103 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 160

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 161 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 210

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 211 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 270

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 271 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 328

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 329 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 358

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 359 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 418

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 419 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 475

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 476 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 528

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 529 NGPRRQAAERAAINAPMQGTA 549


>gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
 gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
          Length = 846

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 183/552 (33%), Gaps = 147/552 (26%)

Query: 148 PNHREAWRLFGEYCKGD--------VTVTREIFKRLEPLSSKEQELWYLDQT-------- 191
           P + E       Y  GD              +++ L   +  ++ LW+L +         
Sbjct: 396 PANSEPASTVRRYGAGDLVADPVSHAQAAWLLWETLSARTQGDERLWWLYREVEKPLAAV 455

Query: 192 ---INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +  RG  +DV     L++ +  E   L+ E+  L  G   +    ++L+  L+ E G
Sbjct: 456 LAQMECRGVALDVPYLQELSEELGKELGYLEAEIHRLA-GHPFNVNSRDQLEAILYDELG 514

Query: 249 LHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           L       TT +R     VL   + L P   ++ + R  A                    
Sbjct: 515 LQAGGKKTTTGKRSTAASVLEEMRSLHPIVGKILDYRELA-------------------- 554

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
                      +         P    P+  R H   +Q +       +SDP+   I    
Sbjct: 555 -----------KLKGTYLDPLPKLIHPKTGRLHTRFNQTVAATGRLSSSDPNLQNIPVRT 603

Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   +A +G  LVVAD + IE R+LA ++G++   K F    D++  T A  F 
Sbjct: 604 EVGRKIRKAFVAEKGYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFG 663

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           + P +V    R   K +   + Y   A    +++   G++                + +A
Sbjct: 664 LEPEKVDPQHRRAAKTINFGVLYGMSA---HRLSGELGIS----------------YAEA 704

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
             F      ++P+                            LW       E+T+  G   
Sbjct: 705 SGFIERYFASYPK--------------------------VRLW------IEKTLAEG--- 729

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
             R+R  V  ++ ++     +  L S    +       R   N                 
Sbjct: 730 --RERGYVETMFGRRR---FVADLESKNRAI--KEAAERMAFNMP--------------- 767

Query: 599 ENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPD-TDEFNASMLYHLMTS 653
              VQ  + D++   M        + G  +VL VHDE+V E P+   +  A ++  +M +
Sbjct: 768 ---VQGTAADLMKLAMVKLYPKLKERGAHLVLQVHDELVVEAPEPLAKEVAEVMCEVMQN 824

Query: 654 NPSWAKGLPLKA 665
              W   +PL+ 
Sbjct: 825 V--WELDVPLEV 834


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/564 (15%), Positives = 172/564 (30%), Gaps = 84/564 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           + +K  L  +    + HN  F+ R  L     +  P    +    L   +          
Sbjct: 442 KEVKTFLSTSKAEKIGHNLKFDLRVFLAHGIEVAGPFFDTMLVHALVEPD---------- 491

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-----GEYCKGDVTVT 168
                    M+   E    +        + ++     +++          EY   D  VT
Sbjct: 492 -----QRHGMDYLSERYLGYSPVSITTLIGEKKGATPQKSMAEVPLEPLAEYAAEDADVT 546

Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            ++ ++L P   +          E  L  +   +   G  VDV       Q +  +   L
Sbjct: 547 LQLSQKLRPELERLGLMKVFYEIEAPLLPVLAHMEHEGVKVDVPTLEEFGQELLSQANVL 606

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQA 273
            + ++        +    ++L   LF    L      T T    T ++ L + +   P  
Sbjct: 607 RERIQG-YVDWPFNLNSPKQLGEVLFDHLKLMEKPKKTATGQYQTNEQTLLTLQGRHPII 665

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +                                 +   ++         P    P   
Sbjct: 666 DDILA-------------------------------YRECTKLKSTYVDALPAAVNPLTH 694

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387
           R H    Q++       ++DP+   I         +R   +   EG  L+ AD + IE R
Sbjct: 695 RVHTTFHQLMAATGRMASTDPNLQNIPIRTDQGREIRKAFVPEKEGWVLMSADYSQIELR 754

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           V+A ++ +   ++AF+ G D++  T A+ + VA  +V  + R   K++   + Y   A  
Sbjct: 755 VMAELSADPAMMEAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYGISAFG 814

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +    T  +    A ++      E +       +   E+    A    ++ T   R +
Sbjct: 815 LSQRLGNT--SRTEAAQII------ENYFKQYPGVKRYMEDIVTQARTQGYVETLTGR-R 865

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGR 566
           +  R  +S    + +   +        G A    K   V +    ++      ++L    
Sbjct: 866 RYLRDINSSNMTVRSATERVAMNAPIQGTAADMIKLAMVNVARSLREGGFKTRMLLQVHD 925

Query: 567 SLVYRDVGNNRSYLNTTTRQLTRE 590
            L++         +     Q  RE
Sbjct: 926 ELLFEVPLEEVDKVKPVIEQGMRE 949


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 47  DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 96

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 97  LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 154

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 155 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 204

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 205 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 264

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 265 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 322

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 323 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 352

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 353 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 412

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 413 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 469

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 470 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 522

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 523 NGPRRQAAERAAINAPMQGTA 543


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/519 (17%), Positives = 165/519 (31%), Gaps = 79/519 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    +     VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKPLFADVKKAKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172
               LS + +  G E IA      T      +++    +    +  +Y   D  +T  +F
Sbjct: 430 ----LSKEHL--GIEPIAY-----TAIAGTGKHQQTLDQIDIEIVAKYAAEDADITFRLF 478

Query: 173 KRLEPLSSKEQELWYLDQTIND-----------RGYCVDVALAHTLNQIVDVERTKLDQE 221
              + L  +++ L+ L   I              G  +D       +  ++    +L+ +
Sbjct: 479 NHFKALLEQDETLYKLYCEIEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
             +L  G   +     +L+  LF + GL     T      T + VL    +    A  + 
Sbjct: 539 CYNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIM 597

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                                 S+         P   L   SR H 
Sbjct: 598 KYR-------------------------------HLSKLKNTYTDKLPKM-LDVNSRVHT 625

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +Q  T      +SDP+   I         +R   IA  G  +V AD + IE R++A +
Sbjct: 626 SYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHL 685

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  LKAF    D++  T A    +   +V+ +QR   K +   L Y   A     +A
Sbjct: 686 SKDKNLLKAFNQSLDIHSATAAEVLGIGIDEVSSEQRRKAKAINFGLIYGMSAF---GLA 742

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +        +                +       E A ++ ++ T   R +    +
Sbjct: 743 KQLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPE 795

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
            +S+     N   +A       G A    K+  + +  M
Sbjct: 796 INSKNVMQRNAAERAAINAPMQGTAADIIKKAMIDVNTM 834


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 46  DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 95

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 96  LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 153

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 154 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 203

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 204 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 263

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 264 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 321

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 322 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 351

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 352 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 411

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 412 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 468

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 469 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 521

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 522 NGPRRQAAERAAINAPMQGTA 542


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +           E  L  +   +   G  +D       +  ++    +L+ + 
Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTTILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +     +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P   L    R H  
Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA +G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LK F    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 104/600 (17%), Positives = 196/600 (32%), Gaps = 95/600 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALE 62
           D ET S +          A+D  ++  AF              D      +    KE  E
Sbjct: 368 DTETTSLV----------AQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEFKEVFE 417

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121
           +  +  +A N  ++  VLK   N  I         +LA     P         A    + 
Sbjct: 418 DESIGKIAQNLKYDWVVLK---NYGIEPKGKFFDTMLAHYLLQPDMRHNMDVLAKSYLNY 474

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-------- 173
           +  E   LI +  KG+    + D              EY   D  +T ++ +        
Sbjct: 475 EPVEITSLIGK--KGKKQGSMRD-------VELDKITEYAGEDADITLQLKEIFDAQIKA 525

Query: 174 ---------------RLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
                           LE L  + E  L  +  T+   G  +D      L++ +  E   
Sbjct: 526 QDLRHPAPEDGGEKVTLEKLLDEVETPLIEVLATVETNGVRLDSESLAKLSKELAKEVVV 585

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           L++++  +  G   +    ++L   LF +  L L+   + T     ++ +++        
Sbjct: 586 LEEKIYKIA-GEQFNIASPKQLGEILFGK--LQLDPKAKKTKSGQYATGEEI-------- 634

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                           LV+  + +  ++  L F G  +         P     +    H 
Sbjct: 635 ----------------LVKLADKNEIVQHILDFRGLQKLKNTYVDALPELVNKKTGLIHT 678

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391
             +Q +       +++P+   I         VR   I    +  L+ AD + IE R++A 
Sbjct: 679 SYNQAVAATGRLSSTNPNLQNIPIRTAQGREVRRAFIPRSDEFVLLAADYSQIELRIMAE 738

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            + +   +KAF+ GED++ TT ++ + V   QV  D R   K     + Y   A     +
Sbjct: 739 FSQDATMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTANFGIIYGISA---HGL 795

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           +    +       ++K     EE+   + +   M     E    +  +G      ++  R
Sbjct: 796 SERLNIPRKEAGEIIKA--YFEEFPAVKQYMDDMINKAREQEYVETILGR-----RRYLR 848

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
             +SR +       +        G A    K   + L    K ++    ++L     LV+
Sbjct: 849 NINSRNAVERGNAERNAINAPIQGSAADMIKIAMIRLHEFLKKEHLKSKMILQVHDELVF 908


>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
          Length = 926

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/553 (15%), Positives = 163/553 (29%), Gaps = 86/553 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---------LENT 64
           D     +        ++  +F  +          H  P MP  L            LE+ 
Sbjct: 354 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
               +  +  ++  VL         I     TL+ +              AL+    +  
Sbjct: 412 SKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVRTI 469

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-- 182
           + +++  +  +                       EY   D  +T ++   L P  ++E  
Sbjct: 470 KYEDVAGKGAQQ----------IGFDEVPLEQASEYAAEDADITLQLHHALYPQIAREPG 519

Query: 183 ---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                      +  + + +   G  +D       +  +     +L+Q+   L  G   + 
Sbjct: 520 LSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAYGLAGG-EFNL 578

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++    F    L +         +T + VL    +  P    +  +R         
Sbjct: 579 GSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 629

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P    P   R H    Q +      
Sbjct: 630 ----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IA  G K+V AD + IE R++A ++ ++  L+AF  
Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G+  +    
Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAKL 784

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +        +     +    +    E    +   G           + +          
Sbjct: 785 YID--RYFLRYPGVARYMEETRARAKEKGYVETVFGRRL-----WLPEINGGNGPRRQAA 837

Query: 525 HQAFEQTIENGKA 537
            +A       G A
Sbjct: 838 ERAAINAPMQGTA 850


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 50  DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAK 99

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 100 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 157

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 158 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 207

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 208 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 267

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 268 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 325

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 326 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 355

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++A ++ ++
Sbjct: 356 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 415

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 416 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 472

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 473 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 525

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 526 NGPRRQAAERAAINAPMQGTA 546


>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
 gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
          Length = 917

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 119/693 (17%), Positives = 206/693 (29%), Gaps = 154/693 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID    +  D     +        ++  +F  +          H  P MP+ L       
Sbjct: 336 IDAAALTAFDTETTALDPML--ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLA 393

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
             K  LE+ D   V  +  ++  VL    N DI ++     TL+ +              
Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLA---NYDIALNGIEHDTLLESYVVESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K  + +++  +  K    + +       +                +T ++   
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHA 500

Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P  ++E  L  + + I              G  +D A  H  +  +     +L+ E  
Sbjct: 501 LYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGEAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +         +T + VL    +  P    +  +
Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P    P   R H   
Sbjct: 620 R-------------------------------GLSKLKSTYTDKLPRMVNPTTGRVHTNY 648

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IAS G ++V AD + IE R++A ++G
Sbjct: 649 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISG 708

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS 
Sbjct: 709 DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 765

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+  +     +    A   +     +    +    E    +   G           + +
Sbjct: 766 LGITRDAAKLYIDRYFAR--YPGVAQYMEDTRATAKEKGYVETVFGRRL-----WLPEIN 818

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   + +         L                
Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAV------DGWL---------------- 856

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                          +RD LA  M          ++ VHDE+V 
Sbjct: 857 -------------------------------TRDQLASRM----------IMQVHDELVL 875

Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E P+ +       L  +M         +PL AE
Sbjct: 876 EVPEGELSLVREKLPEMMCGVAK--LKVPLVAE 906


>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
          Length = 926

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/553 (15%), Positives = 163/553 (29%), Gaps = 86/553 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---------LENT 64
           D     +        ++  +F  +          H  P MP  L            LE+ 
Sbjct: 354 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
               +  +  ++  VL         I     TL+ +              AL+    +  
Sbjct: 412 SKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVRTI 469

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + +++  +  +                       EY   D  +T ++   L P  ++E  
Sbjct: 470 KYEDVAGKGAQQ----------IGFDEVPLEQASEYAAEDADITLQLHHALYPQIAREPG 519

Query: 185 LW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L             + + +   G  +D       +  +     +L+Q+   L  G   + 
Sbjct: 520 LARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAYGLAGG-EFNL 578

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++    F    L +         +T + VL    +  P    +  +R         
Sbjct: 579 GSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 629

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P    P   R H    Q +      
Sbjct: 630 ----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IA  G K+V AD + IE R++A ++ ++  L+AF  
Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G+  +    
Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAKL 784

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +        +     +    +    E    +   G           + +          
Sbjct: 785 YID--RYFLRYPGVARYMEETRARAKEKGYVETVFGRRL-----WLPEINGGNGPRRQAA 837

Query: 525 HQAFEQTIENGKA 537
            +A       G A
Sbjct: 838 ERAAINAPMQGTA 850


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 107/535 (20%), Positives = 182/535 (34%), Gaps = 139/535 (25%)

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHT 206
            E       ++  ++  L      E+ L +L +            +   G  +DVA    
Sbjct: 397 TEEAGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGVRLDVAYLKA 456

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261
           L+  V+ E  +L++E+  L  G   +    ++L+  LF E GL     TE T +R     
Sbjct: 457 LSLEVEAELRRLEEEVHRLA-GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 515

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL + ++  P   ++                                Q+   S+      
Sbjct: 516 VLEALREAHPIVDRIL-------------------------------QYRELSKLKGTYI 544

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376
              P    P+ +R H   +Q  T      +SDP+   I     +   +R   +A EG KL
Sbjct: 545 DPLPALVHPKTNRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWKL 604

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           VV D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K + 
Sbjct: 605 VVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTIN 664

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A       +                     +E+A  F     +++P+     
Sbjct: 665 FGVLYGMSAHRLSGELAI-------------------PYEEAVAFIERYFQSYPK----- 700

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                      +AW +K      L     + + +T       +  +RR VP         
Sbjct: 701 ----------VRAWIEK-----TLAEGRERGYVET-------LFGRRRYVP--------- 729

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-- 614
           +L   + S R          R   N                    VQ  + D++   M  
Sbjct: 730 DLASRVKSIREAA------ERMAFNMP------------------VQGTAADLMKLAMVK 765

Query: 615 --MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                 + G  ++L VHDE+V E P +  E  A      M     W   +PL+ E
Sbjct: 766 LFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLEVE 818


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 156/453 (34%), Gaps = 68/453 (15%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTV----TREIFKRLEPLSSKEQELWYL--------- 188
           L D    N     R +G   K D       +  +++ L P  ++E+ L +L         
Sbjct: 377 LLDPGNTNPEGVARRYGGEWKEDAAARALLSERLWQALYPRVAEEERLLWLYREVERPLA 436

Query: 189 --DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                +   G  +DV     L+Q V  E  +L+ E+  L  G   +    ++L+  LF E
Sbjct: 437 QVLAHMEATGVRLDVPYLEALSQEVAFELERLEAEVHRLA-GHPFNLNSRDQLERVLFDE 495

Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            GL     TE T +R     VL   ++  P   ++   R                     
Sbjct: 496 LGLPPIGKTEKTGKRSTSAAVLELLREAHPIVGRILEYRELM------------------ 537

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359
                        +         P    P+  R H   +Q  T      +SDP+   I  
Sbjct: 538 -------------KLKSTYIDPLPRLVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPV 584

Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R   IA EG  LV  D + IE RVLA ++G++  ++ F  G+D++  T A  
Sbjct: 585 RTPLGQRIRKAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWM 644

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V P  V    R   K +   + Y   A    +++    +     A  ++       ++
Sbjct: 645 FGVPPEGVDGAMRRAAKTVNFGVLYGMSA---HRLSQELSIPYEEAAAFIE-----RYFQ 696

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                  W+ +   E   +  ++ T   R ++     ++RV  +     +        G 
Sbjct: 697 SFPKVRAWIAKTLEE-GRKKGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 754

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           A    K   V L    +    + ++L     LV
Sbjct: 755 AADLMKLAMVKLFPRLRPLG-VRILLQVHDELV 786



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604
                K +  +   L  GR   Y +   G  R   +   R +  RE           VQ 
Sbjct: 695 FQSFPKVRAWIAKTLEEGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 753

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            + D++   M          G  I+L VHDE+V E P      A+ L    M     +  
Sbjct: 754 TAADLMKLAMVKLFPRLRPLGVRILLQVHDELVLEAPKARAEEAAQLAKETMEGV--YPL 811

Query: 660 GLPLKAE 666
            +PL+ E
Sbjct: 812 SVPLEVE 818


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 100/616 (16%), Positives = 184/616 (29%), Gaps = 99/616 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--FAFGFDDHPVELWDCVHD----PVMPQ 55
             + +D ET S             +     L   +   +                    +
Sbjct: 371 RHIAVDTETTS------------LDTFEAELAGISIAVETGKARFISFAQSALDRDKTVE 418

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE 114
           +LK  LEN  +  +  N  ++  VLK    +++         +LA     P         
Sbjct: 419 ILKPLLENPSLPKIGQNLKYDMLVLKKY-GIELSP--VAFDTMLASYVLNPEEKHNLDDL 475

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A      +     EL+     G+T + +++       E      +Y   D  +  ++   
Sbjct: 476 AAHHLGYRTTTFDELVG---TGKTKQHIFE----VDPEKL---SDYACQDADLALQLEGV 525

Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                  E EL +L +            +   G C+D       ++ V  E   L + + 
Sbjct: 526 FRKKLDGETELLWLCENIEFPLVTVLAEMEYAGICIDTHHLEKASERVKKELELLTETIY 585

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF    L  +  T+T       VL     L P A  +   R
Sbjct: 586 A-AAGSAFNIDSPKQLAHILFDLLALPPKKRTKTGYSTNVEVLEELATLFPIARDLLEYR 644

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                             +         P    P   R H   +
Sbjct: 645 SL-------------------------------QKLKSTYIDALPKMVNPLTGRLHTTFN 673

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIA--SEGKKLVVADLAGIEARVLAWMA 393
           Q IT      +S+P+   I     +   +R   I    E   L+ AD + IE R+ A ++
Sbjct: 674 QFITATGRLSSSNPNLQNIPIRSPLGKEIRRAFIPSTPENW-LLSADYSQIELRIAAEIS 732

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   L+AF   ED++  T    F+    ++T D R   K +   + Y         ++ 
Sbjct: 733 GDPQLLEAFRNREDIHTATAKVIFDT--DEITSDMRRKAKEVNFGVLYGIMPF---GLSR 787

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +       ++ T              + +QE       E  ++ T   R ++     
Sbjct: 788 RLNIPQKEAKAIIDT-----YISKYPGLFKALQEIIVT-GREKGYVTTILGR-RRYLADL 840

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRD 572
           +SR + L     +A   T   G A    K          +  N   +++L     L++  
Sbjct: 841 NSRNTNLKKAAERAAMNTPIQGTAADIIKCAMNLCSSRMRHLNMKSVMLLQVHDELLFET 900

Query: 573 VGNNRSYLNTTTRQLT 588
               +  L+    Q  
Sbjct: 901 TDAEKEPLSKLVEQAM 916


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/574 (15%), Positives = 172/574 (29%), Gaps = 88/574 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64
           D     +        ++  +F  +          H  P +P  L         K  LE+ 
Sbjct: 351 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVLAKLKPWLEDA 408

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKM 123
               +  +  ++  VL    N  I ++     TL+ +              AL+    K 
Sbjct: 409 SRKKLGQHLKYDAQVL---VNHGIALNGIEHDTLLESYVLESHRTHDMDSLALRHLGVKT 465

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE- 182
            + +++  +  +                       EY   D  +T ++   L P  ++E 
Sbjct: 466 IKYEDVAGKGAQQ----------IGFDEVPLDKASEYAAEDADITLQLHHALYPQIAREP 515

Query: 183 ----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                       +  + + +   G  +D       +  +     +L+QE   L  G   +
Sbjct: 516 GLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYVLAGG-EFN 574

Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               +++    F    L +         +T + VL    +  P    +  +R        
Sbjct: 575 LGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR-------- 626

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                  G S+         P    P   R H    Q +     
Sbjct: 627 -----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGR 663

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             ++DP+   I         +R   IA+ G K+V AD + IE R++A ++ ++  L+AF 
Sbjct: 664 LASNDPNLQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFA 723

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G+  +   
Sbjct: 724 HGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAK 780

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +        +     +    +    E    +   G           + +         
Sbjct: 781 LYID--RYFLRYPGVARYMEETRTRAKEKGYVETVFGRRL-----WLPEINGGNGPRRQA 833

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
             +A       G A    K   + +    +    
Sbjct: 834 AERAAINAPMQGTAADLIKLSMIAVDDWLERGGF 867


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/574 (15%), Positives = 172/574 (29%), Gaps = 88/574 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64
           D     +        ++  +F  +          H  P +P  L         K  LE+ 
Sbjct: 351 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVLAKLKPWLEDA 408

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKM 123
               +  +  ++  VL    N  I ++     TL+ +              AL+    K 
Sbjct: 409 SRKKLGQHLKYDAQVL---VNHGIALNGIEHDTLLESYVLESHRTHDMDSLALRHLGVKT 465

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE- 182
            + +++  +  +                       EY   D  +T ++   L P  ++E 
Sbjct: 466 IKYEDVAGKGAQQ----------IGFDEVPLDKASEYAAEDADITLQLHHALYPQIAREP 515

Query: 183 ----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                       +  + + +   G  +D       +  +     +L+QE   L  G   +
Sbjct: 516 GLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYVLAGG-EFN 574

Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               +++    F    L +         +T + VL    +  P    +  +R        
Sbjct: 575 LGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR-------- 626

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                  G S+         P    P   R H    Q +     
Sbjct: 627 -----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGR 663

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             ++DP+   I         +R   IA+ G K+V AD + IE R++A ++ ++  L+AF 
Sbjct: 664 LASNDPNLQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFA 723

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G+  +   
Sbjct: 724 HGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAK 780

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +        +     +    +    E    +   G           + +         
Sbjct: 781 LYID--RYFLRYPGVARYMEETRTRAKEKGYVETVFGRRL-----WLPEINGGNGPRRQA 833

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
             +A       G A    K   + +    +    
Sbjct: 834 AERAAINAPMQGTAADLIKLSMIAVDDWLERGGF 867


>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
 gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
          Length = 920

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 117/699 (16%), Positives = 213/699 (30%), Gaps = 166/699 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID    +  D     +        ++  +F  +          H  P MP+ L       
Sbjct: 339 IDAAALTAFDTETTALDPML--ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLA 396

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
             K  LE+ D   V  +  ++  VL    N DI ++     TL+ +              
Sbjct: 397 RLKPWLESADRKKVGQHLKYDAQVLA---NYDIALNGIEHDTLLESYVVESHRTHDMDSL 453

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K  + +++  +  K    + +       +                +T ++   
Sbjct: 454 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHA 503

Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P  ++E  L  + + I              G  +D A  H  +  +     +L+ E  
Sbjct: 504 LYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGEAY 563

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +         +T + VL    +  P    +  +
Sbjct: 564 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P    P   R H   
Sbjct: 623 R-------------------------------GLSKLKSTYTDKLPRMVNPTTGRVHTNY 651

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IAS G ++V AD + IE R++A ++G
Sbjct: 652 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISG 711

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS 
Sbjct: 712 DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 768

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+  +     +                                           +  ++
Sbjct: 769 LGITRDAAKLYID-----------------------------------------RYFARY 787

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V++   +     ++     + +  R+                 L LP           
Sbjct: 788 PGVAQYMEDTRATAKEK-GYVETVFGRR-----------------LWLP----------- 818

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
              +  N   RQ               +Q  + D++   M+         +    +++ V
Sbjct: 819 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQV 872

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P+ +       L  +M         +PL AE
Sbjct: 873 HDELVLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAE 909


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 114/694 (16%), Positives = 220/694 (31%), Gaps = 153/694 (22%)

Query: 5   FIDF---ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
           FID    ET    D    G+     +  ++  +F           C  D      +    
Sbjct: 379 FIDSVMGETEISFDTETTGLDP--NEAELVGLSFCITKGEAYYVPCPADRNECIQLLNNF 436

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-AL 116
           +    N  +T V  N  ++  +LK  +  ++     I   +LA     P    ++   + 
Sbjct: 437 QPLFNNASITWVGQNIKYDLLMLK-WYGFEL--QGNIFDTMLAHYVIEPDGKSSMDLLSA 493

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K    +     ELI +  KG+ +                   EY   D  +T ++     
Sbjct: 494 KFLGYQPVSITELIGKKGKGQGN---------MRDIEIEKIKEYAAEDADITLQLKNVFL 544

Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           PL  KEQ           L  +   +   G  +D       + ++  +  + +Q +    
Sbjct: 545 PLIKKEQVEKVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVYEQA 604

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G+  +    ++L   LF +                     KL P+A +    +      
Sbjct: 605 -GVKFNLASPKQLGEVLFDKM--------------------KLDPKAKKTKTGQYATGED 643

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
            + KL    +  N        L F   ++         P     +  R H    Q +   
Sbjct: 644 VLAKLANQHKICND------ILSFRELTKLKNTYVDALPQLINSKTGRVHTSYAQAVAVT 697

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I         +R   I   E   LV AD + IE R++A ++ +    +
Sbjct: 698 GRLSSTNPNLQNIPVRTERGREIRKAFIPRDENHVLVSADYSQIELRIVAAISADVNMCE 757

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+TG+D++  T A+ FNV  ++VTK+ R   K +   + Y  GA     +A   G++  
Sbjct: 758 AFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSVNFGIIYGQGAF---GLADNLGISR- 813

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                   T  + +   ++++   + + 
Sbjct: 814 ----------------------------------------TEAKAIIDNYKKQFPNIQQY 833

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSY 579
            +      ++T    + ++ RKR                  L    S  +   G   R+ 
Sbjct: 834 MDNTINFAKET-GYVETLMGRKR-----------------WLKDINSANFTVRGFAERNA 875

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633
           +N+                   +Q  + D++   M+    A         ++L VHDE+V
Sbjct: 876 INSP------------------IQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQVHDELV 917

Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            +   +  E    ++   M    +    +P  AE
Sbjct: 918 FDVLKEELEKVKPVILDCMQHALALPNDVPTNAE 951


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 113/699 (16%), Positives = 207/699 (29%), Gaps = 176/699 (25%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----QV 56
           D ET S   LT            ++  +F             HD       +P       
Sbjct: 370 DTETTSLDPLT----------AQIVGMSFSVAAGTGAYLPLTHDYFDAPSQLPLAEVLAK 419

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115
            K  LEN  +  V  N  +++ VL    N  I ++     TL+ +              +
Sbjct: 420 FKPLLENPTIKKVGQNLKYDKHVLA---NHGIALNGIAHDTLLQSYVLESHRGHGMDELS 476

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +    +++  +  K      +             +  EY   D  +T ++ + L
Sbjct: 477 ARHLGIEPISFEQVAGKGAKQVGFNQVTI----------EVAAEYAAEDADITLQLHEAL 526

Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P            S  E        TI   G  +D  + +  +  + ++  +L+ +   
Sbjct: 527 SPQVLQDDKLNFIYSQVEMPSMECLFTIERNGVLIDANMLNRQSNEIGMKLMELEAKAFE 586

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF + G+           +T + VL       P    +    
Sbjct: 587 LA-GQPFNLGSPKQLQEILFGKLGIKPIKKTPSGAPSTDEDVLQELALDYPLPKVLLE-- 643

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                        + G ++         P        R H   +
Sbjct: 644 -----------------------------YRGLAKLKSTYTDKLPKMINAHTGRVHTNYN 674

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I         +R   IA  G  +V AD + IE R++A ++ +
Sbjct: 675 QAVAITGRLASSDPNLQNIPVRTAEGRRIREAFIAPPGSHIVSADYSQIELRIMAHLSKD 734

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF   ED++  T A  F V  + V  +QR   KV+   L Y   A     +A   
Sbjct: 735 AGMLQAFANNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIYGMSAF---GLAQNL 791

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +  +   + ++                                             ++ 
Sbjct: 792 NIERSAAQNYIERYF-----------------------------------------ARYP 810

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVG 574
            V +   +  +  ++             +     Y  +      L +P   S    R  G
Sbjct: 811 GVRQYMQDTRELAKE-------------KGYVETYFGRR-----LWVPEINSANGMRRAG 852

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
             R+ +N                     Q  + D++   M+   K          +++ V
Sbjct: 853 AERAAINAPM------------------QGTAADLIKLAMIAVDKWLKDEQLNTKLIMQV 894

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E  D++ E     L  LM S       +PL AE
Sbjct: 895 HDELVLEVADSELELVKQKLPELMQSVAK--LDVPLLAE 931


>gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
 gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
          Length = 834

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 100/544 (18%), Positives = 167/544 (30%), Gaps = 129/544 (23%)

Query: 148 PNHREAWRLFGEYCKGD--------VTVTREIFKRLEPLSSKEQELWYL----------- 188
           P + +       Y  GD             E+++ L    + E+ LW+L           
Sbjct: 384 PTNSDPAATVRRYGAGDWSEDPAARALAAAELWRILGERLAGEEALWWLYREVERPLAGV 443

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  VDVA    L+  +  E   ++ E+  L  G   +    ++L+  L+ E G
Sbjct: 444 LAEMEHAGVRVDVAYLEALSAELGREIAAIEAEVHRLA-GRAFNLNSRDQLEVILYDELG 502

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
           L     T+ T +R  S+              R+ A                         
Sbjct: 503 LTPTRRTQKTGRRSTSAAALEALVGAHPIVERILA------------------------- 537

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
            +   S+         P    P   R H    Q  T      +SDP+   I         
Sbjct: 538 -YRELSKLKGTYLDPLPRLVHPATGRIHTRYHQTGTATGRLSSSDPNLQNIPVRTEVGRR 596

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G  LV AD + IE RVLA ++G++   + F+   D++  T +  F V P  
Sbjct: 597 IRRAFVAEPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEA 656

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V   +R   K +   + Y        +++   G+        ++       + ++    +
Sbjct: 657 VDPFRRRAAKTVNFGVLYGMSP---HRLSRELGIEYAEAERFIQ------RYFESYPRVQ 707

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              E   E A E  ++ T   R ++      SR   +     +        G A    K 
Sbjct: 708 AYIERTLEQAREKGYVETLFGR-RRYIPDIRSRNRNVREAAERMAFNMPVQGTAADLMKL 766

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
             V                                                 KL   I  
Sbjct: 767 AMV-------------------------------------------------KLAPEIRS 777

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLP 662
             +R IL                 VHDE+V E P +  E  A ++  +M    +WA  +P
Sbjct: 778 LGARLIL----------------QVHDELVLEAPQERAEAVARVVREVMEG--AWALDVP 819

Query: 663 LKAE 666
           L+ E
Sbjct: 820 LEVE 823


>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
 gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 923

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 102/601 (16%), Positives = 186/601 (30%), Gaps = 99/601 (16%)

Query: 6   IDFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           +D ET S   +     G+   +E      + F   +   PV+L           +L+  L
Sbjct: 347 LDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPLL 402

Query: 62  ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           E+  V  V  +  ++  VL+        +  D  +  ++ T   AR +    A + +G  
Sbjct: 403 EDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYE 462

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                  + +G + I                 P      +   +Y   D  +T  +   L
Sbjct: 463 TMKYVDLVGKGAKQI-----------------PFSHVGVQEATQYAAEDADITLRLHCVL 505

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P               E  L  + + I   G  +D    +  +  +        Q+   
Sbjct: 506 APKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMD 565

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF E  L +         +T +  L +               
Sbjct: 566 LA-GRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP------- 617

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   R  L++   ++         P    P   R H    
Sbjct: 618 ------------------------RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYH 653

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q         +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 654 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++    A  F     +VT ++R   K +   L Y   A     +A   
Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAF---GLARQL 770

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +        + D  +  R   EN  + A +  ++ T   R +       S
Sbjct: 771 GISRGEAQDYIA------LYFDRFSGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIAS 823

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    KR  V +         L +     R+L+   V +
Sbjct: 824 GNQTQRAGAERAAINAPMQGTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHD 877

Query: 576 N 576
            
Sbjct: 878 E 878



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 18/172 (10%)

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN- 556
             G   + V    R+    ++        AF    + G  I   + +D   +Y  +    
Sbjct: 734 VFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLG--ISRGEAQDYIALYFDRFSGV 791

Query: 557 --NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILA 611
              +       R   Y + V   R YLN+     Q  R            +Q  + DI+ 
Sbjct: 792 RDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA-AINAPMQGTAADIIK 850

Query: 612 EGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN 654
             M+           +    ++L VHDE+V E  +         +   M + 
Sbjct: 851 RAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +           E  L  +   +   G  +D       +  ++    +L+ + 
Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +     +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P   L    R H  
Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA +G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LK F    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 113/698 (16%), Positives = 208/698 (29%), Gaps = 164/698 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID    +  D     +        ++  +F  +          H  P +P+ L       
Sbjct: 336 IDAAALTAFDTETTSLDP--MTARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDEVLA 393

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             K  LE+ D   V  +  ++  VL         I     TL+ +              A
Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLANYGIELSGIE--HDTLLESYVLESHRTHDMDSLA 451

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+    K  + +++  +  K    + +       +                +T ++   L
Sbjct: 452 LRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHAL 501

Query: 176 EPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P  ++E  L  + + I              G  +D A     +  +     +L+ +   
Sbjct: 502 YPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEIATRLVELEAQAYE 561

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    +++    F +  L +         +T + VL    +  P    +  +R
Sbjct: 562 LAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR 620

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P    P   R H    
Sbjct: 621 -------------------------------GLSKLKSTYTDKLPRMVNPETGRVHTNYA 649

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       ++DP+   I         +R   IAS G ++V AD + IE R++A ++G+
Sbjct: 650 QAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHQIVSADYSQIELRIMAHISGD 709

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   A     +AS  
Sbjct: 710 ASLLRAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVINFGLIYGMSAF---GLASNL 766

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+  +     +                                           +  ++ 
Sbjct: 767 GITRDAAKLYID-----------------------------------------RYFARYP 785

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V++   +     ++     + +  R+                 L LP            
Sbjct: 786 GVAQYMEDTRAIAKEK-GYVETVFGRR-----------------LWLP------------ 815

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629
             +  N   RQ               +Q  + D++   M+              +++ VH
Sbjct: 816 EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDGLASRMIMQVH 870

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E P+ +       L  +M         +PL AE
Sbjct: 871 DELVLEVPEAELPRVREKLPEMMCGVAK--LKVPLVAE 906


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +           E  L  +   +   G  +D       +  ++    +L+ + 
Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +     +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P   L    R H  
Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA +G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LK F    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 116/683 (16%), Positives = 202/683 (29%), Gaps = 152/683 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64
           D     +        ++  +F  +          H  P MP+ L         K  LE+ 
Sbjct: 348 DTETTALDPMV--ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVLARLKPWLESP 405

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           D   V  +  ++  VL         I     TL+ +              AL+    K  
Sbjct: 406 DRKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 463

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + +++  +  K    + +       +                +T ++   L P  ++E  
Sbjct: 464 KYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHCALYPQIAREPG 513

Query: 185 LWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L  + + I              G  +D A     +  + +    L+ +  +L  G   + 
Sbjct: 514 LERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIAMRLVDLEAQAYALAGG-EFNL 572

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++    F +  L +         +T + VL    +  P    +  +R         
Sbjct: 573 GSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 623

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P    P   R H    Q +      
Sbjct: 624 ----------------------GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 661

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IA+ G ++V AD + IE R++A ++G+   L+AF  
Sbjct: 662 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 721

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS  G+  +    
Sbjct: 722 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAF---GLASNLGITRDAAKL 778

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +    A               E+    A E  ++ T   R +    + +          
Sbjct: 779 YIDRYFARYP------GVAQYMEDTRASAKERGYVETVFGR-RLWLPEINGGNGPRRQAA 831

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A       G A    K   + +         L                          
Sbjct: 832 ERAAINAPMQGTAADLIKLSMIAV------DGWL-------------------------- 859

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643
                                +RD LA  M          ++ VHDE+V E PD +    
Sbjct: 860 ---------------------TRDKLASRM----------IMQVHDELVLEVPDDELSLV 888

Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666
              L  +M         +PL AE
Sbjct: 889 REKLPEMMCGVAK--LKVPLVAE 909


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 113/685 (16%), Positives = 209/685 (30%), Gaps = 149/685 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVL 57
           L  D  T    D    G+    +   ++ F+F   +         H      + V P+  
Sbjct: 324 LSKD--TLVAFDTETTGLDTRTD--KMVGFSFCTSNEKAYYVPVGHSYLGVEEQVDPEDA 379

Query: 58  KEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             AL+      IV  N  F+ ++L   + ++  +  +  T+++A      S +     A 
Sbjct: 380 VAALKKLMKQKIVGQNLKFDLSLLYNQYGME-EVLPFADTMIMAWLTDPGSRVGLDSLAQ 438

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K     M+  KE++ +  +  +H  + D       +AW  F  Y    +    E+     
Sbjct: 439 KFFKYDMKPFKEMVKKG-ENFSHVNIADATFYAAEDAWMTFLLYGA--IKKKMELSSLTH 495

Query: 177 PLSSK---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            L      E     +   +   G  VD     TL + +  +  +L  E+  L+ G   + 
Sbjct: 496 LLKEAKDVEYPFINVLIRMERLGIKVDQVKLETLKKTLSEDLHRLTSEIHELS-GSEFNI 554

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           R  ++L   LF   GL     T+T       VL S K   P   ++   R    +     
Sbjct: 555 RSTQQLGVVLFQHLGLKGGKKTKTGYSTNEAVLQSLKHEHPVIGKILEYR-EYHKMLSTY 613

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++    D +                             SR +    Q  T      
Sbjct: 614 VEPLLKLAKKDEK-----------------------------SRIYTSFIQTGTATGRLS 644

Query: 351 TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           + DP+   I     +   VR   +A EG KLV  D + IE R+LA  + +   ++AF  G
Sbjct: 645 SKDPNLQNIPVRSTLGRSVREAFVAKEGYKLVSIDYSQIELRLLAHFSKDAALMEAFNKG 704

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D+++ T  + F     +  K +R   K +   L                          
Sbjct: 705 TDIHMATAVKLFG---EEEAKAKRNFAKSVNFGLL------------------------- 736

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                    + + E        + +   +      V      + 
Sbjct: 737 -------------------YGMGPKKLSDELGITSAEAKEIIANYFASFPTVKNFLEGIQ 777

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +  +  I+     + ++RR                                  Y N    
Sbjct: 778 ERVK--IDGYVETLLKRRRIF-------------------------------DYENANGM 804

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
           Q   +  Y  +    + Q  + D++   M +             ++L +HDE++ E  + 
Sbjct: 805 Q---KAAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQIHDELIFEIRED 861

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPL 663
             E  +    H+M     W   +PL
Sbjct: 862 QVEKISKRFVHVMEHI--WELEVPL 884


>gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
 gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
          Length = 907

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 112/690 (16%), Positives = 206/690 (29%), Gaps = 165/690 (23%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D     +  Y E   ++  +F  +          H  P  P  L         K  LE+ 
Sbjct: 334 DTETTSLN-YME-AEIVGLSFAVERGEAAYVPLAHSYPGTPAQLDRDAVLAALKPLLEDP 391

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           D   +  N  ++ +VL      DI +       +L     +   +       ALK   + 
Sbjct: 392 DKAKLGQNLKYDASVLARY---DIAMQGIAFDTMLESYVLDSTGTRHDMDSLALKYLGRS 448

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
               +++  +  K  T + +                 Y   D  VT  + + L P     
Sbjct: 449 TTHFEDVAGKGAKQITFDKV----------GIEEAAAYAAEDAEVTLALHETLWPKLQET 498

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                 L+  E  L  +   +   G  +D       ++ +      L++E  ++  G V 
Sbjct: 499 PSLASVLTDIELPLVPVLSRMERCGALLDEERLWEHSRELGQRLQALEEEAHNVA-GQVF 557

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L   LF +  L +   T      T + VL       P    +  +R       
Sbjct: 558 NLGSPKQLGQILFEKLELPVLKKTPKGAPSTAEEVLQELALDYPLPKLLIEHR------- 610

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                   G S+         P        R H    Q +T   
Sbjct: 611 ------------------------GLSKLKSTYTDKLPGMINSHTGRIHTSYHQAVTATG 646

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R   IA+EG ++V AD + IE R++A ++ +   L AF
Sbjct: 647 RLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQIVAADYSQIELRIMAHLSEDPGLLAAF 706

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
               D++  T A  F V    V+ +QR   K +                    G++    
Sbjct: 707 RENLDVHSATAAEVFGVPLDSVSGEQRRKAKAIN--------------FGLIYGMSAFGL 752

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  +  +       +A+ +     E +P   +    + T                     
Sbjct: 753 ARQLHLDRG-----EAQRYIDVYFERYP--GVRQYMVRTRA------------------- 786

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                           +A ++  V  ++              GR L   ++         
Sbjct: 787 ----------------LAHEQGYVETLF--------------GRRLYLPEI--------- 807

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636
             R   R+           +Q  + DI+   M+              +++ VHDE+V E 
Sbjct: 808 NVRNKMRQQAAERTAINAPMQGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDELVLEV 867

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
            ++  +     L  LM++    A  L ++A
Sbjct: 868 AESQLDPVCDELCRLMSAAADLAVPLLVEA 897


>gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912]
 gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912]
          Length = 890

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 89/515 (17%), Positives = 160/515 (31%), Gaps = 131/515 (25%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            EI        + E  L ++   +   G  VD     +L +    E  +L++E+  L  G
Sbjct: 479 LEIRGLWPLYHNLELPLSFVLAKMERTGVRVDATRLRSLGETFSTEIARLEEEIYKLA-G 537

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL  +  T+T       VL           ++ + R     
Sbjct: 538 TTFNLNSPKQLAEILFDKLGLPPQKKTKTGYSTGADVLEKLAPYHEIVQRILDWRQLIKL 597

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ +                               P   + H    Q +T 
Sbjct: 598 QSTY-IEGLLKVIR------------------------------PETGKIHTCFQQAVTA 626

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                ++DP+   I         +R   I SE G K+V AD + IE RVLA  + +   +
Sbjct: 627 TGRLSSTDPNLQNIPVRVEEGRRLRQAFIPSESGWKIVSADYSQIELRVLAHFSKDPALV 686

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF    D++  T A  F V   QVT   R   K +   + Y        +     G+  
Sbjct: 687 QAFRDDLDIHARTAAEVFEVPQEQVTPGMRRQAKAVNFGIVYGISDYGLSQ---NLGIPR 743

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +                                             +  ++   
Sbjct: 744 KEAAEFIA--------------------------------------------RYFAKFPR 759

Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           + + + +      +NG    +  +RR +P ++             + RS         R+
Sbjct: 760 VKSYMEETVAAARKNGFVTTLLGRRRYLPDIHSSNY---------NLRSFA------ERT 804

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
            +NT                   +Q  + DI+   M+   +          ++L VHDE+
Sbjct: 805 AMNTP------------------IQGSAADIIKRAMVEVDRRLTEGDFRAKMLLQVHDEL 846

Query: 633 VCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           V E P  +      +    M S  S    +PLK +
Sbjct: 847 VFEVPPEEVGALQDMVKQAMESAVS--LDVPLKVD 879


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 106/627 (16%), Positives = 204/627 (32%), Gaps = 138/627 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L   L +  ++  AHN+ +   ++    +    +       ++A        L       
Sbjct: 387 LAALLGDKKMSKTAHNAKY---LMNLLLSAGQEVKGLDFDTMIAAHLLGEKNLAIKDLVF 443

Query: 117 KLSSQKMEEGKELIARFCKGETHE--CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +    ++ + + ++ R  K        L +  +      +RL G +          +   
Sbjct: 444 EHFGIEIADIENILTRNGKKTIFNEVQLSEAAQLAADYTFRLKGIFAAQ--LAETRLMDL 501

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              +   E  L  +   +   G  +D  L   + +    +  KL++++ +   G   +  
Sbjct: 502 FARV---EMPLLPILLGMERIGIMLDTDLLKAMAEKTGRQIFKLEEDIYAQA-GHSFNIG 557

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF E  L +   T+T       VL   +        +   RM          
Sbjct: 558 SPQQLGRILFDELKLPVIKKTKTGYSTGAEVLEELQGKHRIVDLILEYRML--------- 608

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                                  +         P    P   R H   +Q  T      +
Sbjct: 609 ----------------------VKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSS 646

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           S+P+   I         +R   IA  G  L+  D + I+ RVLA ++ +   ++AF++ +
Sbjct: 647 SEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQ 706

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T AR  NV+P++VTK+QR + K +   + Y   +   ++    T L+L       
Sbjct: 707 DIHTATAARLLNVSPSKVTKEQRRLAKTVNFGVIYGMSSYGLEQ---ATELSLEEA---- 759

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                ++  KA+ +K+ RV+  + E+ Q
Sbjct: 760 -------------------------------------DKFIKAYFEKYPRVAVYFAEIKQ 782

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                 +     +  +RR +P +                               N+  R 
Sbjct: 783 QART--QGYVETLLGRRRYIPEI-------------------------------NSPNR- 808

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640
           + RE           VQ  S DI+   M+         K    ++L VHDE++ E P  +
Sbjct: 809 ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKIKEEKLKSRLLLQVHDELIFEVPTAE 867

Query: 641 EFN-ASMLYHLMTSNPSWAKGLPLKAE 666
               + +L   M+     A  +PLK E
Sbjct: 868 LGRMSDLLIETMSGAV--AFEIPLKVE 892


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +           E  L  +   +   G  +D       +  ++    +L+ + 
Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +     +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          +   S+         P   L    R H  
Sbjct: 599 -------------------------------YRHLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA +G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LK F    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
 gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
          Length = 879

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 117/661 (17%), Positives = 223/661 (33%), Gaps = 135/661 (20%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
            +Y     +        D P  + D   D       KE  E+ ++   + +   +  +L 
Sbjct: 327 DRYI-HSEIYKLGIKTTDTPTYIIDP--DSDFVSKFKEIFEDEEIVKNSFDIKEDVVLLD 383

Query: 82  AC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
               NL +P    +    L   +   S+      +      +++   +L+ +  K   ++
Sbjct: 384 KLGINLKLPYDDMMLMHYL--IDPSRSSYDLKVLSQSYLDYEVKSPVDLLGKGKKALKYQ 441

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
            L      N+  +     E  K  +    + +  L+     E +L  +   +   G+  D
Sbjct: 442 DLDFDELGNYLASGINAIEDSKEILEDKLDEYHMLDLYKEIEIKLSKVLADMEIVGFVTD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
             +   L + +D +  K+ +E+  L  G   +    ++L   LF +  L +   T+T   
Sbjct: 502 KKVLEDLKENIDKDIDKITEEIYELA-GSEFNINSTKQLGEVLFKDLDLPVIKKTKTGFS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T  +VL   +       ++   R    +     +  L +A++ DGR+R T +        
Sbjct: 561 TNAQVLEKLRDKHQIIPKIERYR-ELFKLRSTYIEGLEKAIDEDGRIRSTFR-------- 611

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372
                    QN+                     + DP+   +         +R    A E
Sbjct: 612 ---------QNI--------------AATGRLSSQDPNLQNLPIKTDEGRLIRKAFRAEE 648

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           GK L+ AD + IE R+LA ++G++  + AF+ G D++  T ++ F+    +VTK QR+  
Sbjct: 649 GKILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQRSEA 708

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y        +      +        +    A           +   ++  E 
Sbjct: 709 KAVNFGIIYGISDYGLSQ---NLNIPRKEAKEYIDNYMASYP------SIKEYMDSIVEK 759

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A ED ++ T                                       ++RR VP +   
Sbjct: 760 AKEDGYVETLF-------------------------------------KRRRYVPEI--- 779

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                      + R+   R  G  R  LNT                   +Q  + DI+  
Sbjct: 780 -----------NSRNFNVRSFGQ-RVALNTP------------------IQGTAADIIKI 809

Query: 613 GMM----NATKAG--YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665
            M+    N  KAG    IVL +HDEI+ E  ++ +  A  +L   M +       +PL  
Sbjct: 810 AMIETDKNLKKAGLDAKIVLQIHDEIILEADESSKDEAIKILRESMENATD--LEVPLIV 867

Query: 666 E 666
           +
Sbjct: 868 D 868


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 106/535 (19%), Positives = 182/535 (34%), Gaps = 139/535 (25%)

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHT 206
            E       ++  ++  L      E+ L +L +            +   G  +DVA    
Sbjct: 397 TEEAGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGVRLDVAYLKA 456

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261
           L+  V+ E  +L++E+  L  G   +    ++L+  LF E GL     TE T +R     
Sbjct: 457 LSLEVEAELRRLEEEVHRLA-GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 515

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL + ++  P   ++                                Q+   S+      
Sbjct: 516 VLEALREAHPIVDRIL-------------------------------QYRELSKLKGTYI 544

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376
              P    P+ +R H   +Q  T      +SDP+   I     +   +R   +A EG +L
Sbjct: 545 DPLPALVHPKTNRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWRL 604

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           VV D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K + 
Sbjct: 605 VVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTIN 664

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A       +                     +E+A  F     +++P+     
Sbjct: 665 FGVLYGMSAHRLSGELAI-------------------PYEEAVAFIERYFQSYPK----- 700

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                      +AW +K      L     + + +T       +  +RR VP         
Sbjct: 701 ----------VRAWIEK-----TLAEGRERGYVET-------LFGRRRYVP--------- 729

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-- 614
           +L   + S R          R   N                    VQ  + D++   M  
Sbjct: 730 DLASRVKSIREAA------ERMAFNMP------------------VQGTAADLMKLAMVK 765

Query: 615 --MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                 + G  ++L VHDE+V E P +  E  A      M     W   +PL+ E
Sbjct: 766 LFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLEVE 818


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 92/562 (16%), Positives = 178/562 (31%), Gaps = 72/562 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            + + L   L +     + HN  ++  VL      D+P+   +   ++A     P   + 
Sbjct: 386 EVRRALAPLLADDRRLKLGHNLKYDLQVLHRH---DLPLAPPLADTMIASYLIDPSRRSH 442

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                + +L  +++    E+  R  + E    +                 Y   DV  TR
Sbjct: 443 GLDVLSEELLQRRLTSFAEVTDRDRRPEAFAHVAP----------AAAAAYSCEDVAATR 492

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            +++  +P  ++          E  L  +   +   G  +D  +   L      E  +L 
Sbjct: 493 LLWQLFQPKLAELELAELFYQVEITLLPILARMERVGILLDGQVLKELAAEFSQELERLS 552

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVF 277
            ++  L  G+  +     +L   LF    L     T+  T     +   ++L        
Sbjct: 553 SKIYQLA-GVEFNINSPRQLGEVLFERLKLPHGRKTKGKTGYSTDIRELERLAAYHDLPA 611

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                         +     S+              P   R H 
Sbjct: 612 ----------------------------AIIAQRNLSKLKSTYVDKLSTLINPADGRIHT 643

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +Q +T      +S+P+   I         +R   IA+ G + + AD + I+ RVLA  
Sbjct: 644 SFNQTVTATGRLSSSNPNLQNIPVRTQEGRRIRGAFIAAPGHRFLAADYSQIDLRVLAHY 703

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   L+AF+  +D++  T A  F V PA VT D R + K +   + Y   A     +A
Sbjct: 704 SADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVAKTINFGIIYGMSAF---GLA 760

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                +       +        + +     +   E   E A  D F+ T  +R ++   +
Sbjct: 761 EQLRCSRKEAQVFID------RYFELYRGVKTFMEEIVEQARRDGFVRTLLKR-RRQLPE 813

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYR 571
            +S          +    T   G A    K   +      + KN N   +L     L++ 
Sbjct: 814 INSSNKLRREFAERTAINTPIQGTAADIIKLAAIACDRELRRKNFNTEALLQIHDELIFE 873

Query: 572 DVGNNRSYLNTTTRQLTREYTY 593
              + ++ +    +Q       
Sbjct: 874 VPEDEQAAVGKLVQQAMENVME 895


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 93/590 (15%), Positives = 192/590 (32%), Gaps = 88/590 (14%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTD 65
           T    D     +  Y     ++  +F +            +      + +  +  LE+T 
Sbjct: 363 TFC-FDTETTSLDPY--QAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEFRPLLESTT 419

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
              V  N  ++  +L+       P    I   ++A     P                M  
Sbjct: 420 QCKVGQNLKYDNLILRTYGIEVAPP---IFDTMVAHYLVAPD-----------KPHNMNA 465

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAW---RLFGEYCKGDVTVTREIFKRLEPLSSKE 182
             E    +        +  R             L  EY   D  +T ++ + LE    +E
Sbjct: 466 IAESYLNYAPIPIEALIGSRKSTQKSMRMVDVELVKEYACEDADITLQLKRLLELNIKQE 525

Query: 183 Q----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                       L  +   +  +G  +D  +   ++  +  E   L++E+  L  G   +
Sbjct: 526 NLSKLFYEIEIPLVQVLTAMEYQGVQIDTQVLREISVTLGTELAALEKEIHRLA-GHAFN 584

Query: 233 SRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L   LF +  +       +     T + VL+   K  P A  + + R    +  
Sbjct: 585 ISSPKQLGEILFDKLKIAGNNKKTKSGQYATGELVLADLTKDHPIAANILDYR-ELQKLK 643

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              ++ L++ ++                              P   + H   +Q +    
Sbjct: 644 STYVDALIDLIS------------------------------PFDGKVHTSYNQTVVTTG 673

Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +++P+   I         +R   + S     L+ AD + IE R++A  + ++  ++A
Sbjct: 674 RLSSTNPNLQNIPIRTEKGRAIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEA 733

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+ G+D++  T ++ F V   QV +  R   K     + Y         +A   G++ + 
Sbjct: 734 FKAGKDIHTATASKLFKVPLEQVDESMRRQAKTANFGIIYGISGF---GLAQRLGISRSE 790

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               ++       +    +  +   +     A E  ++ T   R K+  R  +SR S L 
Sbjct: 791 AIATIQA------YFQEFHAIKAYMDRVIGQAREQGYVTTLMGR-KRYLRDINSRNSTLR 843

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570
               +    T   G A    K   V +  +++K+K    L+L     LV+
Sbjct: 844 GFDERNAINTPIQGTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHDELVF 893


>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
 gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
          Length = 904

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 99/628 (15%), Positives = 187/628 (29%), Gaps = 155/628 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + LK  LE++ +  +  N  ++  +     N  I I+      +L            +  
Sbjct: 379 EDLKPILEDSSIKKLGQNLKYDAHI---FLNYGIEINGISDDTMLMSYV--------IES 427

Query: 115 ALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                  K+    + +   CK  E+            + +      Y   D  VT +++ 
Sbjct: 428 NQNHGMDKLSA--KYLGHNCKSYESLVGKGVNQLTFDQVSVEDAVPYAAEDADVTLQLYL 485

Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            ++        L  +              I   G  +D  +    ++++  +   L+++ 
Sbjct: 486 AMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILGDQSKVIGEKLLLLEEKA 545

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L+  LF +  +         T +T + VLS      P    +  
Sbjct: 546 FDLA-GQPFNLSSPKQLQEILFEKLEIKPLKKTPSGTPSTSEEVLSELALNYPLPKLILE 604

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A                               +         P        R H  
Sbjct: 605 YRSLA-------------------------------KLKSTYTDKLPKMINESSGRVHTS 633

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q I       +SDP+   I         VR   IA +G K++ AD + IE R++A ++
Sbjct: 634 YNQAIAITGRLASSDPNLQNIPIRTVEGRKVREAFIAPDGSKILSADYSQIELRIMAHLS 693

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF+  ED++  T    FN+  + V+ +QR   KV+   L Y  G     K   
Sbjct: 694 KDKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKVINFGLIYGMGVYGLAK--- 750

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              LN+   A              A+N+       +P                       
Sbjct: 751 --NLNIERAA--------------AQNYIERYFSKYP----------------------- 771

Query: 514 HSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                 +   +    +   +NG       +R  VP +                       
Sbjct: 772 -----SVREYMEDTKQDARKNGYVETHFGRRLWVPEI--NGSNGMQR------------- 811

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
            G  R+ +N                     Q  + D++   M+               ++
Sbjct: 812 AGAERAAINGPM------------------QGTAADLIKMAMVGVKTWLDGQRHLKGKMI 853

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMT 652
           + VHDE+V E PDT+       +  +M 
Sbjct: 854 MQVHDELVFEVPDTEVTEFKENIKRIME 881


>gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
 gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
          Length = 865

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 88/527 (16%), Positives = 163/527 (30%), Gaps = 139/527 (26%)

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCV 199
           HR      G   +    +T E++++L P              E  L  +   +   G  +
Sbjct: 424 HRRLDLKLGGAAEQHADITLELYEQLAPAIDGRGLRKLYDEIELPLTRVLARMERTGIRI 483

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DL 254
           D A    L+ +++ + + L  E+ +L  G   +    ++L   LF +  L          
Sbjct: 484 DGAELKRLSVLMESQISGLTAEIHALA-GKPFNISSPQQLGKVLFEDLNLPAPVKYGKGK 542

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
           T +T   VL           +V   R                                 +
Sbjct: 543 TISTAADVLDELAAEHEIVRKVLEYRQL-------------------------------T 571

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVI 369
           +         P    P   R H   +Q         +S+P+   I     +   +R+  +
Sbjct: 572 KLKGTYVDALPALIDPATGRLHTSFNQTGAATGRLSSSNPNLQNIPIRTSLGREIRAAFV 631

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             +G KL+VAD + IE R+LA M+G++  ++AF  GED++  T A    V P  VT + R
Sbjct: 632 PRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLMVTPEAR 691

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y   A     +A+  G+        +K                      
Sbjct: 692 RDAKAVNFGIVYGISAF---GLAAQLGIGRAEAERYIK---------------------- 726

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPL 548
                                    +R   +   + +   +  + G    +  + R +P 
Sbjct: 727 ----------------------NYFARYVGVKRFIEETIAEVRKTGVTKTLFGRERPIPE 764

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
           +  +          P+ R          R+ +N+                    Q  + D
Sbjct: 765 INGRN---------PNARGFA------ERTAVNSPL------------------QGTAAD 791

Query: 609 ILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYH 649
           ++   M+    A         ++L VHDE+V E P  +    S +  
Sbjct: 792 LIKLAMVRIDAALAAGGFQAAMLLQVHDELVFECPPEELDEVSRMVK 838


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 91/539 (16%), Positives = 177/539 (32%), Gaps = 71/539 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
            ++   LK    ++  + VAHN  F+  +L     + I +++   T+++A          
Sbjct: 368 EIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKY-GVKI-VNQVNDTMIMAYVLKSSGKHD 425

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169
                  LS + +  G E IA      T      RN+    +       +Y   D  +T 
Sbjct: 426 MDS----LSKEHL--GIEPIAY-----TTLAGTGRNQLTLDQIDIEKVAKYAAEDADITF 474

Query: 170 EIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKL 218
            ++     +   ++ L+ L              +   G  +D A     +  ++    +L
Sbjct: 475 RLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMEKVGVKIDAAKLIEQSANLEDSIKEL 534

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           + +   L  G   +     +L+  LF + GL     T                +  ++  
Sbjct: 535 EIKCYDLA-GQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIAA 593

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
             M+                           +   S+         P   L    R H  
Sbjct: 594 LIMK---------------------------YRHLSKLKNTYTDKLPKM-LDVNGRVHTS 625

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA +   +V AD + IE R++A ++
Sbjct: 626 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFIAEQEFCVVAADYSQIELRIMAHLS 685

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LKAF  G D++  T A    ++   VT +QR   K +   L Y   A     +A 
Sbjct: 686 KDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAF---GLAK 742

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +      
Sbjct: 743 QLEIPRGEAQEYIDVYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPDI 795

Query: 514 HSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            S+     N   +A       G A  II +   DV  + +++  +++ +++     LV+
Sbjct: 796 SSKNVIQRNAAERAAINAPMQGTAADIIKKAMIDVNTMILQEYNDDIKMVMQVHDELVF 854


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 98/621 (15%), Positives = 181/621 (29%), Gaps = 154/621 (24%)

Query: 64  TDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
             V    H++     +L            D  +  ++     +  +    AL+ +G  L 
Sbjct: 386 ESVKKYFHDAKQALWMLHHHSIELKALAADTMVSAYLLNPTASNYDINDVALEHLGMVL- 444

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                              E    +  R +   R A +LF +  +           RL  
Sbjct: 445 -----------------PAEGETAMASRAEAIRRLAQKLFEKLAERQ-------EDRL-- 478

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   +   G  VD      ++  +      L  ++  L  G   +    +
Sbjct: 479 LTQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELA-GENFNINSPK 537

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF +  L +   T+T         +KL  +   V                     
Sbjct: 538 QLGPILFEKLKLPVLKKTKTGYSTDAEVLEKLAEEHEIVAL------------------- 578

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L++   ++              P+  R H    Q +T      +++P+  
Sbjct: 579 ---------ILEYRQMAKLKSTYTDGLAALVDPQTGRLHSTFHQTVTATGRLSSAEPNLQ 629

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   I    G  ++ AD + IE RVLA M+ ++  L AF  G+D++  
Sbjct: 630 NIPIRLETGRKIRKVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAFRQGQDIHTR 689

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V   QVT + R+  K +   + Y         +A    ++       +    A
Sbjct: 690 TASEVFGVPMDQVTSEMRSRAKAVNFGIVYGISDF---GLARDLKVSRKEAQGYIDHYFA 746

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                       R   +   + +  ++ 
Sbjct: 747 --------------------------------------------RCPGVRQYIDRVIKEA 762

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            E G       RR        K+ N              R+ G  R+ +NT         
Sbjct: 763 KETGYVNTLLNRRRYLPELFSKNFNI-------------RNFGE-RAAMNTP-------- 800

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+   M+              +VL VHDE++ + P+ +  +  
Sbjct: 801 ----------IQGTAADIIKLAMVKISQQLKEQNLSSQMVLQVHDELIFDAPENEIESLI 850

Query: 646 MLYHLMTSNPSWAKGLPLKAE 666
           ML      N +    +PL  +
Sbjct: 851 MLVRQSMEN-ALQLDVPLVVD 870


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 91/534 (17%), Positives = 172/534 (32%), Gaps = 77/534 (14%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--A 108
           P    VLK+ LE+  V  V  N  ++  VLK      + +       ++A     P    
Sbjct: 364 PDARDVLKDVLEDDAVLKVGQNIKYDACVLKRH---GVSLSGISFDTMIASYVINPGLRQ 420

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 A +  + KM   K+++ +       E            +     EY   D  +T
Sbjct: 421 HNLDALAQRYLNHKMISYKDVVGKGKNARGFE----------EVSLEKACEYSCEDADMT 470

Query: 169 REIFKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             + + L             +  E +L  +   +   G  +D AL  T++     E  ++
Sbjct: 471 FRLRRILAKQIRDEKNEALFNELEMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQV 530

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQA 273
           ++++++   G+  +    ++L   LF    L     T  T +     +VL    +    A
Sbjct: 531 EKKIQADA-GMEFNLNSPQQLGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKLAESHRIA 589

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++   R  A                               +              P   
Sbjct: 590 REILRFRSLA-------------------------------KLKSTYLDALVRMVNPETK 618

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +Q +       +SDP+   I         +R   +A  GK LV AD + IE RV
Sbjct: 619 RVHTSFNQTVAATGRLSSSDPNLQNIPIRGDAGKNIRKGFMAGSGKILVAADYSQIELRV 678

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A  + +   + AF+  +D++  T          +VT + R I K +   + Y  G    
Sbjct: 679 FAHYSQDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFGIIYGMGP--- 735

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
           QK++    ++       +                +  +E   E A+E  ++ T   R ++
Sbjct: 736 QKLSEELSISKEAAQDYINAYYDRY------KGVKRFKEKAIETALEKGYVTTLFNR-RR 788

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                    + + +E  +    T   G A    K+  + +     +      ML
Sbjct: 789 YLPDISHNNNRIRSEAERMAVNTPIQGTAADLIKKAMIEIHNRLTEAAFQSKML 842


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii]
          Length = 888

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 105/618 (16%), Positives = 199/618 (32%), Gaps = 133/618 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           LK+  EN ++    +N   +  +LK     +I +      + +A        S  +    
Sbjct: 367 LKDVFENPEIKKYGYNLKNDCLILKPY---EINLTGLYFDIAIAEYLIDSTSSNYEIKDI 423

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           ALK +   +   +EL+ +    +  + L D     +  +     +  K  +  T E +  
Sbjct: 424 ALKYNLGDVLSLEELLGKGKSKKDFKDLSDAQISGYACSVLDIVDKGKEALITTIENYNM 483

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G   D  + + L Q  D+E   L+  +     G   +  
Sbjct: 484 HNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLEASIYEYA-GENFNIN 542

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF + GL     T+T       VL +     P   ++   R           
Sbjct: 543 SPKQLGHILFDKLGLPAIKKTKTGYSTNAEVLEALSDKHPIIDKITLYRQY--------- 593

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                                 ++              P+  R H   +Q IT      +
Sbjct: 594 ----------------------TKLQSTYVDGLLNIINPKTGRIHSSFNQTITTTGRISS 631

Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           ++P+   I     I   +R   +A E   LV AD + IE R+LA +A ++  + AF  G+
Sbjct: 632 TEPNMQNIPVRLEIGRELRKVFVAPEDMYLVDADYSQIELRILAHIANDEGLIDAFSKGD 691

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T +  FNV   +VTK+ R+  K +   + Y         +++  G++        
Sbjct: 692 DIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVYGISDF---GLSNNLGISKQVA---- 744

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                   K+      +R   +   +  
Sbjct: 745 ----------------------------------------KEYIDNYFARYPYVKKYMED 764

Query: 527 AFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
             E+   +G       +RR +P +      N ++  L              R  +NT   
Sbjct: 765 IVEKAKNDGYVETYIGRRRYIPEL---GSNNFIMKNL------------GKRLAMNTP-- 807

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
                           +Q  + D++   M+              ++L VHDE++ E+PD+
Sbjct: 808 ----------------IQGSAADVIKIAMVKVYARLKSEGLKSKLILQVHDELIIESPDS 851

Query: 640 D-EFNASMLYHLMTSNPS 656
           +  + A +L   M S   
Sbjct: 852 EKSYVADLLKEEMESAVD 869


>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
 gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
          Length = 917

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 115/699 (16%), Positives = 213/699 (30%), Gaps = 166/699 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID    +  D     +        ++  +F  +          H  P MP+ L       
Sbjct: 336 IDAAALTAFDTETTALDPML--ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLT 393

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
             K  LE+ D   V  +  ++  VL    N DI ++     TL+ +              
Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLA---NYDIELNGIEHDTLLESYVVESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K  + +++  +  K    + +       +                +T ++   
Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHA 500

Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P  ++E  L  + + I              G  +D A  H  +  +     +L+ +  
Sbjct: 501 LYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +         +T + VL    +  P    +  +
Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P    P   R H   
Sbjct: 620 R-------------------------------GLSKLKSTYTDKLPRMVNPTTGRVHTNY 648

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IA+ G ++V AD + IE R++A ++G
Sbjct: 649 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISG 708

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS 
Sbjct: 709 DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 765

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+  +     +                                           +  ++
Sbjct: 766 LGITRDAAKLYID-----------------------------------------RYFARY 784

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V++   +     ++     + +  R+                 L LP           
Sbjct: 785 PGVAQYMEDTRATAKEK-GYVETVFGRR-----------------LWLP----------- 815

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
              +  N   RQ               +Q  + D++   M+         +    +++ V
Sbjct: 816 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQV 869

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E P+ +       L  +M         +PL AE
Sbjct: 870 HDELVLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAE 906


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 105/612 (17%), Positives = 207/612 (33%), Gaps = 96/612 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-QVLKEALENT-DVT 67
           D     +  Y  +  ++ F+F  ++H        H        +  +  KEAL+      
Sbjct: 326 DTETNALDAY--NAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEAKEALKKLFKHK 383

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           IV  N  ++  V++  F L +    +  T+++A      S +     A +  +  M + K
Sbjct: 384 IVGQNLKYDLAVIENNFGLRLS-SSYADTMLMAWLLNPESNVGLDTLAKRFFNHDMVKFK 442

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------- 180
           +++              +N+           EY   D  +T +++ +L  +         
Sbjct: 443 DVV-------------SKNENFSHVPLDKACEYASEDAWMTLKLYNKLHDMLEPRLLEIA 489

Query: 181 KEQELWYLD--QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           KE E  ++     +   G  +D A    L +  D     L  E+ +L      +    ++
Sbjct: 490 KEVEFPFILTLMRMEKEGIKIDGAYFEALLKRTDGAIDALKHEIFTLCD-AQFNLNSTQQ 548

Query: 239 LKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L T LF + GL     T+T       VL+      P   ++   R      +        
Sbjct: 549 LGTVLFEQLGLPPVKKTKTGYSTDENVLNELLDKHPSIAKILEYRELYKLRSTY------ 602

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                   +   L+    S  G                R H    Q  T      + DP+
Sbjct: 603 --------IEPLLKLSKESPLG----------------RVHTSFIQTGTSTGRLSSKDPN 638

Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I     +   VR   +A EG  L+  D + IE R+LA  + ++  +KAF  G+D++ 
Sbjct: 639 LQNIPVKTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDIHY 698

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T  + F     Q    +R++ K +   L Y  G    ++++ T G+++      +++  
Sbjct: 699 ETALKLFG---EQEAASKRSVAKSINFGLLYGMGP---KRLSETLGISMAEAKRYIES-- 750

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               +       +       E A    ++ T   R K+ +  +H+   +    L +A   
Sbjct: 751 ----YFATFPTIKAYVMEVAEQAKTTGYVETLLGR-KRFFDFEHANAMQYAGYLREAVNT 805

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             +   A + +   +  +  +  D+  L  +L     L++               Q    
Sbjct: 806 VFQGSAADLIKLSMNKIMATLIHDEAKL--LLQIHDELIF----------EVVESQAQSF 853

Query: 591 YTYGGKLTENIV 602
                K+ E I 
Sbjct: 854 ALEAQKVMEEIY 865


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 109/690 (15%), Positives = 213/690 (30%), Gaps = 149/690 (21%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALE----NTD 65
           ID     +  +   +  + F +G  D+ +             +    + EAL     +  
Sbjct: 398 IDTETTDLNPFRAQLVGLGFCWGEADNDLAYIPIGHSGAEGQLPLAEVLEALAPWLASPT 457

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
                 N+ ++R VL       + ++      +LA        L+       L       
Sbjct: 458 QRKCLQNAKYDRLVL---LRHGLELNGVAVDTLLADY------LRDASARHNLEELAQRH 508

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT--------REIFKRLEP 177
                    +  +   L  + +           +YC  DV +T        +++ +  E 
Sbjct: 509 ------YGFRPTSFSDLVGKGQTFADVPIEAAAQYCGMDVHLTYRLAIDLVQQLEQLGEA 562

Query: 178 LSSKEQELWY----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L     EL      +   +   G  +DV     L Q +  +  +L+Q+  +   G   + 
Sbjct: 563 LPQLLSELELPLEPVLAQMEATGIRIDVPYLQELGQSMGDKLQQLEQQAIA-AAGEEFNL 621

Query: 234 RCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              ++L   LF   GL  +   +T     T   VL   +   P    V  +R        
Sbjct: 622 ASPKQLGELLFNTLGLDRKKSRKTKTGWSTDAAVLEKLEDAHPVVPLVLEHR-------- 673

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                    S+         P        R H + +Q +T    
Sbjct: 674 -----------------------TLSKLKSTYVDALPQLVESETGRVHTDFNQAVTATGR 710

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +S+P+   I      S  +R   +  +   L+ AD + IE R+L  + GE+  ++A+ 
Sbjct: 711 LSSSNPNLQNIPVRTAYSRQIRKAFLPQKDWTLLSADYSQIELRILTHLCGEEALVEAYN 770

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +G+D++  T     + +  +V+ ++R +GK +   + Y  GA   Q+ A  TG++     
Sbjct: 771 SGDDVHALTARLLLDKS--EVSDEERRLGKTINFGVIYGMGA---QRFARATGVSQAEAK 825

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +  +   + +     F  W        A+   ++ T   R +                
Sbjct: 826 EFL--SRYKQRYPKVFAFLEW----QERLALSRGYVETLMGRRRP--------------- 864

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                                         D   L  +    +     ++  + +     
Sbjct: 865 ---------------------------FHFDPQGLGRL----KGTDPAEIDLDVARRGGM 893

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET- 636
             Q  R            +Q  S DI+ + M++  +          ++L VHDE+V E  
Sbjct: 894 EAQQLRAAANAP------IQGSSADIIKKAMVDLQQLLLDQQLPARLLLQVHDELVLECA 947

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           P+      S +   M    S    +PL  E
Sbjct: 948 PNALATVQSSVQRTMEQAVS--LSVPLVVE 975


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 115/587 (19%), Positives = 199/587 (33%), Gaps = 140/587 (23%)

Query: 100 ARSNGLPSAL--KAVGEALKLSSQKMEEGKELIA--RFCKGETHECLYDRNKPNHREAWR 155
           A    LP +L       A  L  ++   G   +    F            +      A  
Sbjct: 397 AAFAALPLSLWFDLGLAAYLLDPEQRNYGFPRLRDSLFADPTVDASAVSPDDTARAAALL 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
                 + D     ++ +RL      E  L  +   +   G  VD+         V  + 
Sbjct: 457 AEVYTARLDTAGLTDLVERL------ELPLIPVLLDMERAGIGVDLRSLAAFGAEVATDL 510

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271
           T+L++EL +L  G   + R  ++L   LF E GL  +  T     +T Q  L       P
Sbjct: 511 TRLEKELHTLA-GHPFNPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQDALERLAGSNP 569

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++   R +  +     L+ L +  ++DGR+                           
Sbjct: 570 LVDRILEFR-KLEKLRSTYLDPLPKLADADGRI--------------------------- 601

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEA 386
               H  L+ + T      +S+P+   I     +   +R C +A  GK LV AD + IE 
Sbjct: 602 ----HTTLNNMATATGRLSSSNPNLQNIPIRGPLGRRMRECFVAGPGKTLVAADYSQIEL 657

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA ++GE   L AF  G D++  T +  F+   A++  D+R   K +   L Y  G  
Sbjct: 658 RVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERRQAKTINFGLLYGMGP- 716

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             QK++   G+ L+     +                                        
Sbjct: 717 --QKLSRDLGIKLDAAKAFI---------------------------------------- 734

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++ S +S  ++ + ++ +   +     +A +RR +P +  K              
Sbjct: 735 -AKYFERLSGLSAFYDNIVESAKT--QGYVTTLAGRRRLLPDIESKNS------------ 779

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKA 620
                              Q  R+          +VQ  + DI+   M+      +  +A
Sbjct: 780 ---------------QLASQARRQ------AINTVVQGGAADIIKMAMLAAHKDADLKRA 818

Query: 621 GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           G  +VL +HDE++ ETP DT +     L  LM      A  +PL  +
Sbjct: 819 GAVMVLQIHDELLLETPMDTADAAGKRLSDLMCGVIKLA--VPLVVD 863


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDIDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +           E  L  +   +   G  +D       +  ++    +L+ + 
Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +     +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P   L    R H  
Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA +G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LK F    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
 gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
          Length = 916

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/614 (16%), Positives = 181/614 (29%), Gaps = 153/614 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
           + LK  LE+     +  N  +++ V     N DI ++     TL+ +             
Sbjct: 392 KKLKPWLESATKPKLGQNLKYDKHV---FANHDIQLNGIAHDTLLQSYVLESHRPHNMDS 448

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    K              +       +       A     +Y   D  +T  + +
Sbjct: 449 LALRHLDVKTIS----------YDDVTGKGVKRIGFDEVAIDTATQYAAEDADITFRLHQ 498

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  +  +   I   G  +D  L    +  +  +   L+Q+ 
Sbjct: 499 ALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQSHELGEKLHALEQQA 558

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFN 278
             ++ G   +    ++++  LF +  L +   T T      + VL       P    +  
Sbjct: 559 YDIS-GQPFNLNSPKQIQEILFHQLKLPIVKKTPTGVPSTDEDVLQQLALDYPLPKLLL- 616

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          +   S+         P        R H  
Sbjct: 617 ------------------------------NYRSLSKLKSTYTDKLPLMMDRNTGRVHTN 646

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +       +SDP+   I         +R   IA  G +++ AD + IE R++A ++
Sbjct: 647 YSQAVAVTGRLASSDPNLQNIPVRTSEGRRIREAFIAPAGYRIISADYSQIELRIMAHIS 706

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LKAF  GED++  T A    +   QV ++QR   KV+   L Y         +A+
Sbjct: 707 QDEGLLKAFAAGEDIHSATAAEILGIPLNQVDQEQRRHAKVINFGLIYGMSEF---GLAT 763

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+  +                                              +    + 
Sbjct: 764 QLGIERSAA--------------------------------------------RAYMERY 779

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572
            +R  ++ + + Q  E+    G       RR               L LP   +    R 
Sbjct: 780 FARYPKVESYMQQTREKARRLGYVETVLGRR---------------LWLPEINNANGNRR 824

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVL 626
            G  R+ +N                     Q  + DI+   M+         K    +++
Sbjct: 825 QGAERAAINAPM------------------QGTAADIIKLAMIAVHSWLHKEKLHSKLIM 866

Query: 627 TVHDEIVCETPDTD 640
            VHDE+V E P+ +
Sbjct: 867 QVHDELVLEVPENE 880


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 110/649 (16%), Positives = 203/649 (31%), Gaps = 160/649 (24%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           P E+      P +   LK  L +  +T + H+  + RTVL     +D     +    +LA
Sbjct: 351 PAEV--LEKSPEVKSDLKAVLADPGITKIIHDGKYARTVLAK-IGMDFV---YNFDTMLA 404

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                PS  +   E++   +     G EL     KG              +E      + 
Sbjct: 405 AYLLDPSKPRYDLESVVFDNL----GVEL-----KGTEDPGRRVAYLIPLKEIMSEKLKS 455

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           C        E+F         E  L ++   +   G  VD     +L++    +  +L  
Sbjct: 456 C-----AMEELFF------GVEMPLSFVLSDMEMTGIKVDPEKLESLSREFGEKLEELTG 504

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277
           E+  L  G+  +    ++L   LF +  L +    ++       VL   K   P   ++ 
Sbjct: 505 EIYRLA-GVEFNINSPKQLGEVLFEKLNLPVIKKKKSGYSTDAEVLEKLKNAHPVVEKIL 563

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                                  +                  R H 
Sbjct: 564 EYRFLM-------------------------------KMKSTYADGLLALVDKSTYRIHS 592

Query: 338 ELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391
             +Q IT      +++P+   I     I   +R   +A S    L+  D + IE RVLA 
Sbjct: 593 NFNQTITATGRISSTEPNLQNIPVKTDIGRKIRGVFVAESPEHVLLSGDYSQIELRVLAH 652

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  ++AF  GED++  T +  F V P QVT   R   K +   + Y         +
Sbjct: 653 LSGDEGLIEAFIKGEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNFGIIYGISDY---GL 709

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   G++       ++                                            
Sbjct: 710 AQNLGISTAEAREYIE-------------------------------------------- 725

Query: 512 QKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +R  ++ + + +       +G    I  +RR +P +  +           + RS   
Sbjct: 726 NYLNRYPKVRDYIRETIRNARMSGYVTTILNRRRYIPEINSRNY---------NLRSFA- 775

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDI 624
                 R  +NT                   +Q  + DI+   M+  T           +
Sbjct: 776 -----ERVAMNTP------------------IQGSAADIIKVAMVKITNHFREYGLKAKM 812

Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE---GYE 669
           ++ VHDE++ + P ++ E   +++   M +       +PL  +   GY 
Sbjct: 813 LIQVHDELIFDVPKSELEVVKNIVKDDMENAIP--LKVPLVVDFKEGYT 859


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/588 (16%), Positives = 171/588 (29%), Gaps = 85/588 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVMPQVLKEA------------ 60
           D    G+          L        P +       H   + Q +++             
Sbjct: 357 DTETDGLDA----QQCRLVGISLAIAPGKACYIPLDHQTTLDQPVRQPAIAEIAAALNPI 412

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  +  N  F+  VL+      +P+   I   +L        A     + L +  
Sbjct: 413 LADPTVLKIFQNGKFDLAVLRRH---QMPVIAPIDDTMLISYAQEAGAHGHGMDELSV-- 467

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
             +  G   I+     +          P  +        Y   D  VT  ++  L P   
Sbjct: 468 --LHLGHSPISY----DQVTGTGRNRLPFPQVPIDKATAYAAEDADVTLRLWHALRPRLR 521

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                      E+ L  +   +   G  VD A    ++    +    ++ E+  L  G  
Sbjct: 522 ETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRRMSADFALRMADMETEIHQLA-GRP 580

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
            +    ++L   LF E GL     ++T       ++ + +  ++      R         
Sbjct: 581 FNLASPKQLGEVLFDEIGLTGSKRSKTGAWGTDAATLQAIADESGHALPAR--------- 631

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                             L +   ++              PR  R H      IT     
Sbjct: 632 -----------------ILDWRQLAKLKSTYADALVEDVNPRTGRVHTSFQMAITTTGRL 674

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +++P+   I         +R   IA  G  L+ AD + IE R+LA +A       +F  
Sbjct: 675 SSNEPNLQNIPIRTEEGSRIRRAFIADPGHVLISADYSQIELRLLAHVADIPQLKDSFAN 734

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T +  F V    +    R   K +   + Y   A     +A +  ++      
Sbjct: 735 GEDIHARTASEVFGVPMQGMDSLTRRRAKAINFGIIYGISAF---GLARSLAISPGEARQ 791

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKHSRVSELWNE 523
            +    A           R   E   E A  + F+ T   R  + W      R       
Sbjct: 792 YIDAYFARYP------GIRDYMERTKEEARINGFVVTPFGR--RCWVPGIADRNPARRGY 843

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
             +        G A    KR  V L  +  D +    ++L     L++
Sbjct: 844 AERQAINAPLQGGAADIIKRAMVRLPAVLADNSFQTRMLLQVHDELLF 891


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 100/598 (16%), Positives = 194/598 (32%), Gaps = 85/598 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVT 67
           DL   G+ +      VI F+F +++        VH+         +  +L+E L +  ++
Sbjct: 384 DLETTGLDEML--AQVIGFSFCWEEGKSYYVPLVHETKELVDREQVRSLLEEYLGSGRLS 441

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           +V  N  ++  VL+  + + +P + +  T+V A      S       A K    K     
Sbjct: 442 LVGQNIKYDYKVLRQ-WGI-MPKNIYFDTMVAAWLLDSTSVFNMDYLAEKYLDYKTVHYT 499

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
           +++ +           D+   +      +F  Y   D  VT  ++K    L         
Sbjct: 500 DIVPK-----------DKLLSDIPLEQAVF--YGAEDADVTFRLYKLFSELLGARNLRSL 546

Query: 180 --SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   +   G  ++  L   L+   +     +  ++ ++  G   +    +
Sbjct: 547 LDEVEMPLLVIIANMELAGIYLERKLIEPLSAEFEGRIDAIRNQIFAIC-GHAFNLNSPQ 605

Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L+  LF+E  +     T +   T   VL   +   P+   +                  
Sbjct: 606 QLQEVLFVERNIPTGAKTRSGFSTSTDVLEPLRDDYPEVELIL----------------- 648

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                         Q+   ++         P Q   +  R H    Q  T        DP
Sbjct: 649 --------------QYRTLNKLKTTYIDKLPLQINEKTHRIHPSFAQTGTETGRLSCKDP 694

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +RS  +   G   + AD + IE  VLA MA +     AF  G D++
Sbjct: 695 NLQNIPVRTEEGRRIRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAFAAGIDVH 754

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            +T +  F+V   QVT  QR I K +   + Y  G  +    A    +  +     +   
Sbjct: 755 SSTASLIFDVPLDQVTPVQRRIAKTINFGVMYGMGTHSL---AMDLKIPHSEAKQFID-- 809

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              E +    +F    +    +       +G       +   + +SR +    +  +   
Sbjct: 810 QYFERYSSVRSFVEATKTMSQQVGSVSTLLGH-----VRTITEINSRSAVERAKAERIAV 864

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            T+  G A    K   + +  + K K     L+L     L++              ++
Sbjct: 865 NTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEAEIEETKAVVKE 922


>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 923

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/601 (16%), Positives = 185/601 (30%), Gaps = 99/601 (16%)

Query: 6   IDFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           +D ET S   +     G+   +E      + F   +   PV+L           +L+  L
Sbjct: 347 LDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPLL 402

Query: 62  ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           E+  V  V  +  ++  VL+        +  D  +  ++ T   AR +    A + +G  
Sbjct: 403 EDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYE 462

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                  + +G + I                 P      +   +Y   D  +T  +   L
Sbjct: 463 TMKYVDLVGKGAKQI-----------------PFSHVGVQEATQYAAEDADITLRLHCVL 505

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P               E  L  + + I   G  +D    +  +  +        Q+   
Sbjct: 506 APKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMD 565

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF E  L +         +T +  L +               
Sbjct: 566 LA-GRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP------- 617

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   R  L++   ++         P    P   R H    
Sbjct: 618 ------------------------RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYH 653

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q         +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 654 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++    A  F     +VT ++R   K +   L Y   A     +A   
Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAF---GLARQL 770

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +        + D     R   EN  + A +  ++ T   R +       S
Sbjct: 771 GISRGEAQDYIA------LYFDRFAGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIAS 823

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    KR  V +         L +     R+L+   V +
Sbjct: 824 GNQTQRAGAERAAINAPMQGTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHD 877

Query: 576 N 576
            
Sbjct: 878 E 878



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 18/172 (10%)

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN- 556
             G   + V    R+    ++        AF    + G  I   + +D   +Y  +    
Sbjct: 734 VFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLG--ISRGEAQDYIALYFDRFAGV 791

Query: 557 --NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILA 611
              +       R   Y + V   R YLN+     Q  R            +Q  + DI+ 
Sbjct: 792 RDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA-AINAPMQGTAADIIK 850

Query: 612 EGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN 654
             M+           +    ++L VHDE+V E  +         +   M + 
Sbjct: 851 RAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902


>gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 641

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 115/683 (16%), Positives = 201/683 (29%), Gaps = 152/683 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64
           D     +        ++  +F  +          H  P +P+ L         K  LE+ 
Sbjct: 69  DTETTSLDPMV--AQLVGLSFSTEPGKAAYLPVAHRGPDLPEQLPLDDVLARLKPWLESA 126

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           +   V  +  ++  VL         I     TL+ +              AL+    K  
Sbjct: 127 ERKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 184

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + +++  +  K    + +       +                +T ++   L P  ++E  
Sbjct: 185 KYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHALYPQVAREPG 234

Query: 185 LWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L  + + I              G  +D A     +  +     +L+ +   L  G   + 
Sbjct: 235 LQRVYREIEMPVSLVLRKMERTGVLIDDARLQAQSTEIATRLIELEGQAYELAGG-EFNL 293

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++    F +  L +         +T + VL    +  P    +  +R         
Sbjct: 294 GSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 344

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                 G S+         P    P   R H    Q +      
Sbjct: 345 ----------------------GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRL 382

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I         +R   IAS G ++V AD + IE R++A ++G+   L+AF  
Sbjct: 383 ASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 442

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS  G+  +    
Sbjct: 443 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAF---GLASNLGITRDAAKL 499

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +    A               E+    A E  ++ T   R +    + +          
Sbjct: 500 YIDRYFARYP------GVAQYMEDTRTVAKEKGYVETVFGR-RLWLPEINGGNGPRRQAA 552

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A       G A    K   + +         L                          
Sbjct: 553 ERAAINAPMQGTAADLIKLSMIAV------DGWL-------------------------- 580

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643
                                +RD LA  M          ++ VHDE+V E PD +    
Sbjct: 581 ---------------------TRDKLASRM----------IMQVHDELVLEVPDDELSLV 609

Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666
              L  +M         +PL AE
Sbjct: 610 REKLPEMMCGVAK--LKVPLVAE 630


>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
 gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
          Length = 923

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 103/601 (17%), Positives = 184/601 (30%), Gaps = 99/601 (16%)

Query: 6   IDFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           +D ET S   +     G+   AE      + F   +   PV+L           +L+  L
Sbjct: 347 LDTETDSLDPMQAVLIGLSFAAEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPLL 402

Query: 62  ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           E+  V  V  +  ++  VL+        +  D  +  ++ T   AR +    A + +G  
Sbjct: 403 EDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYE 462

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                  + +G + I                 P      +    Y   D  +T  +   L
Sbjct: 463 TMKYVDLVGKGAKQI-----------------PFSHVGVQEATRYAAEDADITLRLHCVL 505

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P               E  L  + + I   G  +D    +  +  +        Q+   
Sbjct: 506 APKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMD 565

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    ++L+  LF E  L +         +T +  L +               
Sbjct: 566 LA-GRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP------- 617

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                   R  L++   ++         P    P   R H    
Sbjct: 618 ------------------------RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYH 653

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q         +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 654 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++    A  F     +VT ++R   K +   L Y   A     +A   
Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAF---GLARQL 770

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +        + D     R   EN  + A +  ++ T   R +       S
Sbjct: 771 GISRGEAQDYIA------LYFDRFAGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIAS 823

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    KR  V +         L +     R+L+   V +
Sbjct: 824 GNQTQRAGAERAAINAPMQGTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHD 877

Query: 576 N 576
            
Sbjct: 878 E 878



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 16/132 (12%)

Query: 538 IIARKRRDVPLVYMKKDKN---NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREY 591
           I   + +D   +Y  +       +       R   Y + V   R YLN+     Q  R  
Sbjct: 772 ISRGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAG 831

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEF 642
                     +Q  + DI+   M+           +    ++L VHDE+V E  +     
Sbjct: 832 AERA-AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT 890

Query: 643 NASMLYHLMTSN 654
               +   M + 
Sbjct: 891 LVHEVSARMAAA 902


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 109/599 (18%), Positives = 200/599 (33%), Gaps = 99/599 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56
           +     D ET S   L          D  ++  +F F         C           +V
Sbjct: 357 LKEFAFDTETTSLTTL----------DAELVGISFSFAPGEAFFVYCAESALSRETAIRV 406

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LEN ++  +  N  ++  VLK   N  + +       +LA     P       +  
Sbjct: 407 LKPILENPEIGKIGQNLKYDMLVLK---NYGVRVQPVRFDTMLASYVLNPD------KTH 457

Query: 117 KLSSQKMEE-GKELIARF---CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            L     +  G E +       KG++ + +Y+       +       Y   D  V  ++ 
Sbjct: 458 NLDDLAADHLGLETVKYADLVGKGKSEKSIYEVEPKTLSD-------YACQDADVALQLK 510

Query: 173 KRLE-------PL----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             LE       PL       E  L  +   +   G  +DVA+  TL++ +  E  ++ + 
Sbjct: 511 NVLEKALGENEPLKKICEELEFPLVGVLADMEHEGVRLDVAVLKTLSETLGTELGRVSKI 570

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFN 278
           +     G   +    ++L   LF +  L  +  T+T      RVL    +  P A Q+  
Sbjct: 571 IYD-AAGEAFNLDSPKQLSEILFEKLKLPAKRRTKTGYSTDVRVLEELAESFPVAKQILE 629

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                  +         P    P+  R H  
Sbjct: 630 YRSL-------------------------------QKLKSTYVDALPNLVHPKTGRIHTS 658

Query: 339 LDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWM 392
            +Q I       +S+P+   I     I   +R   + S+    L+ AD + IE R+ A +
Sbjct: 659 FNQHIAATGRLSSSNPNLQNIPIRTEIGREIRGAFVPSDAHHTLLSADYSQIELRIAAEL 718

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+   L AF+  ED++ TT    F     +VTKD R   K +   + Y         +A
Sbjct: 719 SGDPTMLGAFQNREDIHSTTAKLIF--ETDEVTKDMRRKAKEVNFGVLYGIMPF---GLA 773

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               ++      ++       ++++         E   + A    ++ T   R ++  R 
Sbjct: 774 QRLDISQAEAKEII------SQYKEKYPMIFSYLEGILDKARASGYVETLLGR-RRYIRD 826

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVY 570
            +S+   + +   +A   T   G A    K+  + +   + K      ++L     L++
Sbjct: 827 LNSKNFSIRSAAERAAINTPIQGTAADMIKKAMLGIASDIHKQSLRSRMILQVHDELLF 885


>gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 607

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/651 (14%), Positives = 179/651 (27%), Gaps = 154/651 (23%)

Query: 47  CVHDPVMPQVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                +  +V+  AL    E+  V  +  N  ++  ++        P+   +     A  
Sbjct: 71  LTEGQLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARYGVHLAPVDDTMLLSY-ALH 129

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
            GL         + +  + +    KELI       T          +H         Y  
Sbjct: 130 AGL-HNHGMDELSERYLNHRPIPIKELIGSGKSAVTF---------DHVPV-EKAVAYAA 178

Query: 163 GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  +T  +++  +P   +          E+ L  +   +   G  VD      ++    
Sbjct: 179 EDADITLRLWQHFKPQLPQSRVTTVYETLERPLIPVLTRMEMAGVQVDRDTLSRMSNAFA 238

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
            +  +L++E+ +   G   +    ++L   LF E G       +     T   VL     
Sbjct: 239 QKMVQLEEEIHA-AAGRSFNVGSPKQLGEILFDEMGFQGGVKGKNGAWGTGADVLEDLAT 297

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                  + + R                                 ++             
Sbjct: 298 EHALPGLILDWRQ-------------------------------VAKLKSTYTDALQDHI 326

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383
            P   R H        +     ++DP+   I         +R   +A  GK LV  D + 
Sbjct: 327 NPDSGRVHTSYSIAGANTGRLASTDPNLQNIPVRTEEGRRIRGAFVAPAGKVLVSLDYSQ 386

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA +A      +AF+ G D++  T +  FNV   Q+T + R   K +   + Y  
Sbjct: 387 IELRILAQIAQIDALKEAFQQGLDIHAATASEMFNVPLDQMTPEIRRQAKAINFGVIYGI 446

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A     +A    +  +     +                                     
Sbjct: 447 SAF---GLARNLRIPRDRAQGFID------------------------------------ 467

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                   +   R   +   + Q      ENG       RR               +  P
Sbjct: 468 --------RYFERFPGIRAYMDQTIAFAKENGHVRTLFGRR---------------INTP 504

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
              +         R+ +N                    +Q  + DI+   M+    A   
Sbjct: 505 EINAKGPHAGFARRAAINAP------------------IQGTAADIIRRAMIQMDPAIAH 546

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667
               ++L VHDE++ E  +      + +   +M      A    + L  + 
Sbjct: 547 LPARMLLQVHDELLFEVEENAADELTAIAKRIMEGAADPAVHLDIKLVVDA 597


>gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4]
 gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4]
          Length = 868

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/636 (17%), Positives = 199/636 (31%), Gaps = 156/636 (24%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
            +  P + +     LE     +  +++    + L A              ++LA     P
Sbjct: 355 LLEGPEVLKSFFRLLEEKGGLVSTYDAK---SCLHALEPYGFKPEMIGFDVLLAAYLVNP 411

Query: 107 SALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
           +A   +G  A + +   +  G EL       E  + +Y        +      EY    V
Sbjct: 412 AANNELGAIAFEHAGFMLSPGAEL------PEKAQAIYQLTPILKSKIKLQEQEYLYYSV 465

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                           E  L  +   +   G  V      +L++ +  +  +L +E+  L
Sbjct: 466 ----------------ELPLAAVLADMEKVGVKVSEERLRSLSKELGEQLAQLSEEIYKL 509

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRA 283
             G   +     +L   LF + GL     T+T      S  +KL       +V   R  A
Sbjct: 510 A-GERFNLNSPRQLGYILFEKLGLKPVKKTKTGYSTDASVLEKLAEHEIVAKVLVYRQLA 568

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                          +         P    P   R H    Q  
Sbjct: 569 -------------------------------KLKSTYTDALPELIDPATGRLHTTFLQAG 597

Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
           T      +++P+   I     +   +R   +A      L+ AD + IE RVLA ++ +  
Sbjct: 598 TATGRLASAEPNLQNIPVRDSLGRRIRQAFVAEGPDYVLLSADYSQIELRVLAHLSEDPG 657

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  GED++  T A  F V+P +VT + RA  KV+   + Y        +      +
Sbjct: 658 LCEAFVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVVNFGIVYGMSDYGLSQ---ELKI 714

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                   ++                                            +++ RV
Sbjct: 715 EPGEAHEYIERYF-----------------------------------------RRYPRV 733

Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +    + +   Q  E G    I  +RR +P +            L S R+   R +G  
Sbjct: 734 KQF---IERVIAQAREKGYVTTILNRRRYIPEI------------LSSNRNQ--RQLGE- 775

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHD 630
           R  +NTT                  +Q  + D++ + M++  +          ++L VHD
Sbjct: 776 RLAINTT------------------IQGSAADLIKKAMVDIHRQLKGQGFKCRMILQVHD 817

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
           E++ E P  + E  A ++   M         +P+KA
Sbjct: 818 ELLFEVPKEELEKVAPIIKSTMEQALP--FKVPIKA 851


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/649 (17%), Positives = 204/649 (31%), Gaps = 162/649 (24%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           WD V   + P       E+ +      N  ++ ++ +A     I +       +LA    
Sbjct: 404 WDLVKQSLQPIW-----EDPNRPKSLQNCKYDLSIFRAH---SIRLQGIQFDPMLASYVL 455

Query: 105 LPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
            P A           L L +                 ++E L  + +           EY
Sbjct: 456 NPEASHNLADLAASYLNLPT----------------TSYEKLLGKAESLADLPIAKVAEY 499

Query: 161 CKGD-----------VTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           C  D               ++   RL  L    E  L ++ + +   G  +D       +
Sbjct: 500 CGTDAYCAYRLVPILTEKLQQTDPRLWNLFVQVELPLAHVLEEMEWVGIRIDTEFLRQFS 559

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVL 263
           Q ++ E   L+Q+  +   G V +    ++L + LF +  L +    +T     T   VL
Sbjct: 560 QELEKELHSLEQKAYAQA-GEVFNLNSPKQLGSLLFEKLKLDVRKTRKTATGYSTDASVL 618

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
              +   P                                +   LQ+   ++        
Sbjct: 619 EKLEGDHPV-------------------------------IETILQYRTLAKLKSTYVDA 647

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
            P        R H   +Q +T      +S+P+   I      S  +R   +  EG  L  
Sbjct: 648 LPALVRRDTGRVHTSFNQTVTATGRLSSSNPNLQNIPIRSEFSRRIRQAFVPQEGWLLAS 707

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++ E   ++ F +GED++  T    F     +VT ++R + K +   
Sbjct: 708 ADYSQIELRILAHLSQEPTLIECFRSGEDVHTLTARLLF--EKQEVTSEERRLAKTINYG 765

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y  GA   Q+ A T G++L      ++  +  E +     + R  +    +H   +  
Sbjct: 766 VIYGMGA---QRFARTAGVSLAEAKEFLRRFN--ERYAGVFAYLRATEAFVEKHGYVETL 820

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
           +G          R+    +S+L                                      
Sbjct: 821 LGR---------RRYFPNLSQL-------------------------------------- 833

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                      +R     R+ +N   +         G  ++ I  A+ R  L E + N  
Sbjct: 834 ---------SGHRKQAELRAAVNAPIQ---------GSASDIIKVAMVR--LQEKLQNFR 873

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
                ++L VHDE+V E   ++  +   L    M         +PL  +
Sbjct: 874 S---RLLLQVHDELVFEVEPSEWQDLRPLIQREMEEAVP--LSIPLVVD 917


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 172/544 (31%), Gaps = 74/544 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVLKEALENTDVTIVA 70
           D    G           +        P + W         P   ++++   E+  +  + 
Sbjct: 392 DTETTGFDI----FNDRIVGLSLAVEPFKAWYVPFLEKDTPEYAEIVRPLFEDEKIAKIG 447

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            N  F+  VL+    + I   R   T++L       S       A K  + K  E + LI
Sbjct: 448 QNIKFDLMVLRR-LGITIR-GRMYDTMILHYLLDPESRHNMNALAEKYLNYKPIEIETLI 505

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181
            +  K  T + +                EY   D  VT ++ + L P+  +         
Sbjct: 506 GKGSKQLTMDLVNV----------ERVKEYAAEDADVTLQLKQALYPMIEQIGLQHLYFE 555

Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E+ +  +   I   G  +D          ++ +  +L+  + +       +     +L 
Sbjct: 556 IEEPMIAVLADIEMAGMRIDSEALAVYAVELNRKLAELEAAIRTEAGEPNLNINSARQLG 615

Query: 241 TWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
             LF +  +     +T+T          +L  +  ++ +                     
Sbjct: 616 EVLFGKMRIAEKPKMTKTKQFCTDEDYLQLFARKHRIVDL-------------------- 655

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   L++ G  +         P        R H   +Q +T      +++P+   I
Sbjct: 656 -------ILEYRGVKKLLSTYVEALPQLVNRSTGRIHTSFNQAVTATGRLSSTNPNLQNI 708

Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   I   +   L+ AD + +E R++A ++G++  + AFE GED++  T 
Sbjct: 709 PVRDDMGRRIRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLIAAFEHGEDIHAATA 768

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A+ FN    +VT ++R   K     + Y   A    +      +       ++    A  
Sbjct: 769 AKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQ---RLEIPRKEAKEIIDGYFASY 825

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                    +   +N  E A E+ F+ T   R ++      S  +       +       
Sbjct: 826 P------GVKKYMDNVVEKAKEEGFVSTIFGR-RRYLNDIASHNAIARGLAERNAVNAPI 878

Query: 534 NGKA 537
            G A
Sbjct: 879 QGSA 882


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 108/680 (15%), Positives = 192/680 (28%), Gaps = 169/680 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMP 54
           +++  +D ET S                   L        P E        + +      
Sbjct: 376 LSSFALDTETTS------------LNTFEAELVGISISVKPQEAVFIYCSPEGLKPEKAL 423

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LEN  +     N  ++  VLK    + +         +LA     P     + +
Sbjct: 424 SILKPVLENPAIEKWGQNLKYDILVLKNY-GIQLAPTG--FDTMLASYVINPEETHNLDD 480

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              L+ + ++      +  C          +  P  +        Y   D  +   +   
Sbjct: 481 ---LAQRHLQYRTTTYSELC------GTGKKAVPLRQVPLEALKNYACQDADIALRLQNT 531

Query: 175 LEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           LE      QEL +L              +  RG  +D          V      L + + 
Sbjct: 532 LEKQLKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKHLEKTATKVASLTADLKERIY 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNR 280
           + T G   +    ++L   LF   GL  +  T+T      +VL     + P A  +    
Sbjct: 592 A-TAGSTFNIDSPKQLGEILFTRLGLPAKKTTKTGYSTNVQVLEELAMIHPIAQDILE-- 648

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                        +    +         P    P   + H   +
Sbjct: 649 -----------------------------YRSLQKLRSTYIEALPKILNPATGKLHTSFN 679

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAG 394
           Q IT      +S+P+   I     +   +R   IAS  +  +  AD + IE R+ A ++G
Sbjct: 680 QHITATGRLSSSNPNLQNIPIRTELGKEIRKAFIASTNRNFLLSADYSQIELRIAAELSG 739

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF   ED++  T    F+     VT D R   K +   + Y         ++  
Sbjct: 740 DKKLIEAFRNQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLYGIQPY---GLSMR 794

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             ++      ++ T                                              
Sbjct: 795 LNISQKEAKAIIDTYK-------------------------------------------- 810

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           S+   L+  L     Q  ENG       RR               +   + R+   R   
Sbjct: 811 SKYPGLFEALDALVRQAAENGFVTTLLGRRR-------------YIAALNSRNGNIRKA- 856

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628
             R+ +NT                   VQ  + DI+   M        +      ++L V
Sbjct: 857 AERAAMNTP------------------VQGTAADIIKYAMCLIENTMQEHKMHSTMLLQV 898

Query: 629 HDEIVCETPDTDEFNASMLY 648
           HDE+V ET + +      + 
Sbjct: 899 HDELVFETNEEEHEKLETMV 918


>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
 gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
          Length = 883

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 112/621 (18%), Positives = 201/621 (32%), Gaps = 151/621 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L    EN+ +   AH+  ++  +LK   N  I +       +LA     P   +   +
Sbjct: 360 KKLAPLFENSRIGFYAHHLKYDLHILK---NYGISLANISFDTILASYILTPHLRQHSLD 416

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFK 173
           AL L       GK  I       +      +N+    E        YC  DV  T  + +
Sbjct: 417 ALTLEH----FGKTKI-----PTSDLIGKGKNQITMLEVPIEKVCAYCCEDVDYTYRLKQ 467

Query: 174 ---------RLEPLSSKEQELW-YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                    +LEPL    +     +   +   G  +D  +  TL + V+ +  +L+ E+ 
Sbjct: 468 IFASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRLENEIH 527

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280
           ++      + +  ++L   LF +  +     T T       VL + +     A ++   R
Sbjct: 528 AIAD-EPFNLKSPKQLSGILFEKMKIPPPKKTATGYSTSAEVLETLQNEYAIAKKMLEFR 586

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                             +         P +  P+  R H   +
Sbjct: 587 SLE-------------------------------KLRSSYIETLPKEINPKTGRIHPTFN 615

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +         DP+  QI     +   VR      + G   + AD + IE R+LA  + 
Sbjct: 616 QSVAATGRLSCQDPNLQQIPIRTPLGREVRKAFRPEKQGWSYLSADYSQIELRLLAHFSE 675

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AFE  ED++  T A   N+   QVTK+QR   K +   + Y   A     ++  
Sbjct: 676 DPTLISAFENNEDIHTHTAATVLNIPLEQVTKEQRRQAKAVNFGILYGQQA---WGLSKE 732

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++L   +  +KT                                           Q++
Sbjct: 733 LGISLEEASAFIKTYF-----------------------------------------QRY 751

Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
            RV +    +    E+T + G+A  I  + R +P +  K          P  R       
Sbjct: 752 QRVKDF---VESCKEKTRKTGRAMTIIGRERPIPEIDSKN---------PQIRGAA---- 795

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLT 627
              R  +NT                    Q  + D++ + M+   +          ++L 
Sbjct: 796 --ERLAVNTPL------------------QGTAADLIKKAMIVIDEKLMRGQHLGFMILQ 835

Query: 628 VHDEIVCETPDTDEFNASMLY 648
           +HDE++ E PD +      L 
Sbjct: 836 IHDELIFEIPDFEITAIEQLV 856


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 109/697 (15%), Positives = 203/697 (29%), Gaps = 176/697 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVMPQ-------- 55
           +D ET S   L          D  ++   F   +   +L      H     +        
Sbjct: 385 LDTETNSLNPL----------DAELVGIGFCLGEESNDLFYIPLGHQSQKDEMNQLAIED 434

Query: 56  ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109
               L+  +E+ +      N  F+R +    +N  + +       +LA     N     L
Sbjct: 435 VFLNLRTWIESPEKEKTLQNCKFDRQI---FYNHGLNLSGVTFDTLLADYILNNQEKHGL 491

Query: 110 KAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             +                    F  K  + +    +NK            YC  DV +T
Sbjct: 492 SEICF----------------REFGFKPPSFKETVGKNKDFSFVDINHASIYCGYDVFLT 535

Query: 169 REIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            +I K  +                 E  L  +   +   G  +D+   + L++ +     
Sbjct: 536 YKIAKIFKERFRKEKKELTKLFKEIELPLEQVLSGMEMSGISIDITYLNELSRELKSTLA 595

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271
            +++ +  +      +    ++L   LF +  L  +   +T     T   VL    +   
Sbjct: 596 NIEENVFEIAK-QEFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVEEHE 654

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +  +R                                 S+         P     +
Sbjct: 655 IIPYLIKHR-------------------------------TLSKLLSTYIDALPNLINKK 683

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H   +Q  T      +S+P+   I      S  +R   +  +G KL+ AD + IE 
Sbjct: 684 TGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYSQIEL 743

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A E+  + AF   +D++  T    F      +  D+R +GK +   + Y  G  
Sbjct: 744 RILAHLANEEILITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINFGVIYGMG-- 799

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             +K A +TG++       +      + +     F     E     A+   ++ T   R 
Sbjct: 800 -IKKFARSTGVSTTEAKEFL--IKYKKRYAKIFKFL----ELQERLALSKGYVETIFGRK 852

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           ++                                           K DKN L  ++    
Sbjct: 853 RE------------------------------------------FKFDKNGLGRLIGKEP 870

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAGYD 623
                             +   +       L       +Q  S DI+   M+   K   +
Sbjct: 871 Y-------------EIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLE 917

Query: 624 ------IVLTVHDEIVCET-PDTDEFNASMLYHLMTS 653
                 ++L VHDE++ E  PD  E    ++   M  
Sbjct: 918 MNIPVKMLLQVHDELLFEVKPDFLEITKQLVKETMED 954


>gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 377

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 135/365 (36%), Positives = 178/365 (48%), Gaps = 45/365 (12%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F +Y + DV   R++ KRL     +  E  LW+LDQTINDRG  VD  LA      V
Sbjct: 3   WAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L +    LT G+V ++   + L   L    G+ L D+ + T +R L     L  
Sbjct: 63  ERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDD-PLLPE 121

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLPR
Sbjct: 122 TVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181

Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P+ S E +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RVL
Sbjct: 182 PTLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVL 241

Query: 390 AWMAGEQWKLKAF----------------------------------------ETGEDLY 409
           AW+AGE  KL AF                                          G+D+Y
Sbjct: 242 AWLAGETPKLHAFGEFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIY 301

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              YA SF +AP  VTK QR IGKV ELALGY GG  AF   A+   ++L   A      
Sbjct: 302 KRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAIAGYYPPP 361

Query: 470 SAPEE 474
            +  E
Sbjct: 362 ISTHE 366


>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
 gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
          Length = 945

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 104/669 (15%), Positives = 189/669 (28%), Gaps = 163/669 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------DCVHDPVMPQVLKEALENTDV 66
           +D     +    +     L        P +                + ++L+  LEN  +
Sbjct: 376 VDTETTSL----DTFEAELAGISISAEPAKARFISFAGTGLDRGRSI-EILRPLLENPAI 430

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
                N  ++  VLK    L++    +  T++ +              A      K  + 
Sbjct: 431 PKTGQNLKYDILVLKNY-GLELGPVGF-DTMLASYVLDPDGKHNLDDMAALHLRLKTTKY 488

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
            EL      G     L+      +        +Y   D  +  ++          E  L 
Sbjct: 489 DEL-----TGTGKNRLH-----IYDVEPAKLTDYACQDADLALQLEGAFTRNLEAEPRLM 538

Query: 187 YLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            L QTI             +G  +D       +  V  +   L + + +   G   +   
Sbjct: 539 ELCQTIEFPLVSVLAKMEHQGISIDSKHLEETSMAVGHQLESLRETIHA-AAGTDFNIDS 597

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF   GL  +  T+T       VL     L P    +   R            
Sbjct: 598 PKQLSHILFNVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVSDLLLYRSL---------- 647

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                                 +         P    PR  R H   +Q +T      +S
Sbjct: 648 ---------------------QKLKTTYIDALPKMVNPRTGRVHTSFNQHVTATGRLSSS 686

Query: 353 DPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           +P+   I     +   +R   I  +    L+ AD + IE R+ A ++G+   ++AF  G 
Sbjct: 687 NPNLQNIPIRTPLGREIRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLIEAFRNGL 746

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T    F+     +T D R   K +   + Y         ++    +  N    ++
Sbjct: 747 DIHAETARVIFDT--EDITADMRRKAKEVNFGVLYGIQPF---GLSKRLNIPRNEAREII 801

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
            T                                         +R+K+     L++ L  
Sbjct: 802 DT-----------------------------------------YREKYP---GLFSSLEG 817

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             E+  +NG       RR        ++ N                    R+ +NT    
Sbjct: 818 VIEEGRKNGFVTTLLGRRRYLRDLTSRNSN--------------VQKAAERAAMNTP--- 860

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYD--IVLTVHDEIVCETPDTD 640
                          +Q  + DI+   M         A     ++L VHDE+V ET + +
Sbjct: 861 ---------------IQGTAADIIKCAMNLCSRRIDAASMQSVMLLQVHDELVFETTEDE 905

Query: 641 EFNASMLYH 649
           +     L  
Sbjct: 906 KEGLKSLVE 914


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 118/698 (16%), Positives = 206/698 (29%), Gaps = 164/698 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID    +  D     +        ++  +F  +          H  P +P+ L       
Sbjct: 336 IDAAALTAFDTETTALDP--MTARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVLA 393

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +  LE+ D   V  +  ++  VL         I     TL+ +              A
Sbjct: 394 RLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLA 451

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+    K  + +++  +  K    + +       +                +T ++ + L
Sbjct: 452 LRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD----------ITLQLHQAL 501

Query: 176 EPLSSKE--QELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P  ++E   E  Y D  +            G  +D AL    +  +     +L+ +   
Sbjct: 502 YPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYE 561

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    +++    F +  L +         +T + VL    +  P    +  +R
Sbjct: 562 LAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR 620

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P    P   R H    
Sbjct: 621 -------------------------------GLSKLKSTYTDKLPRMVNPATGRVHTNYA 649

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       ++DP+   I         +R   IAS G ++V AD + IE R++A ++G+
Sbjct: 650 QAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS  
Sbjct: 710 ASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASNL 766

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+                                              +  K    +  +
Sbjct: 767 GITR--------------------------------------------DAAKLYIDRYFT 782

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R   +   +        E G       RR               L LP            
Sbjct: 783 RYPGVAQYMEDTRTTAKEKGYVETVFGRR---------------LWLP------------ 815

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
             +  N   RQ               +Q  + D++   M+         +    +++ VH
Sbjct: 816 EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVH 870

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+V E PD +       L  +M         +PL AE
Sbjct: 871 DELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAE 906


>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
 gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
          Length = 945

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/637 (15%), Positives = 182/637 (28%), Gaps = 150/637 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  +  N  ++  +         PI   +     A+  GL         + 
Sbjct: 423 LKPLLEDPSVMKIGQNMKYDAKIFARYGIEIAPIDDTMLISY-AQHAGL-HNHGMDALSE 480

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +         K L+            +DR   +H         Y   D  +T  +++ L+
Sbjct: 481 RYLGHTPIPIKPLLGTG----KSAITFDRVPIDHA------TPYAAEDADITLRLWQHLK 530

Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P            + E+ L  +   +   G  VD  +   ++     +   L+ E+  + 
Sbjct: 531 PTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVLSRMSNAFAQKMAGLEAEIHEMA 590

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +     ++   LF E GL      +    +T   +L           ++ + R  
Sbjct: 591 -GHSFNVGSPAQVGEILFDEMGLEGGKKGKNGKYSTGADILEDLATEHEMPRRILDWRQL 649

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          S+              P   R H      
Sbjct: 650 -------------------------------SKLKSTYTDALQDHINPDTGRVHTSYSIA 678

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                   ++DP+   I         +R   IA EGK LV  D + IE R+LA +AG   
Sbjct: 679 GASTGRLASTDPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVAGIDS 738

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  G D++  T +  F+V   ++T D R   K +   + Y         +A    +
Sbjct: 739 LKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAINFGVIYGISGF---GLARNLRI 795

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             +     +        ++       +M +                     A+ + + RV
Sbjct: 796 PRSEAQGFID-----RYFDRFPGIKEYMNDT-------------------TAFAKANDRV 831

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             L+  +                                   +  P+  +   +     R
Sbjct: 832 ETLFGRV-----------------------------------IHTPNINAKGPQAGFAKR 856

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
           + +N                    +Q  + DI+   M+    A       ++L VHDE++
Sbjct: 857 AAINAP------------------IQGTAADIIRRAMIRMPDAIKDQPAKMLLQVHDELL 898

Query: 634 CET-PDTDEFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            E   D  +        +M +         +PL  + 
Sbjct: 899 FEVEKDGVDQLIKTAKDIMENAADPVVKLDVPLIVDA 935


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/591 (16%), Positives = 197/591 (33%), Gaps = 91/591 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALE 62
           D ET + +D T         D  ++  +F +            D      +    +   E
Sbjct: 395 DTET-TSLDTT---------DAELVGLSFSYLAGEAFYIPVPADRQQAEEIVGYFRAVFE 444

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121
           N ++  +  N  ++  VLK   N  I +H  +   +LA     P         A    + 
Sbjct: 445 NENIEKIGQNIKYDMLVLK---NYGIEVHGKLSDTMLAHYLLEPDKRHGMDILAASYLNY 501

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KRLEP 177
           +      LI +  KG     + D   P          +Y   D  +T ++     + L  
Sbjct: 502 EPVSITSLIGK--KGGKQGNMRDVAIPE-------ITQYAGEDADITFQLHSIFSRELPK 552

Query: 178 LS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           ++        E  L  +  ++ + G  +D+     ++ +++ +  + + E+     G   
Sbjct: 553 VNAAKLFNEVEMPLTKVLASMENTGVRLDINALKEMSAVLESDLRQTESEIYE-AAGQSF 611

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    ++L   LF +  L      T+T    T + +LS  +     A ++ + R      
Sbjct: 612 NISSPKQLGEVLFEKMKLIEKPKKTKTGQYATGEEILSDLEANHLIARKILDYREL---- 667

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                       +         P     R  R H   +Q +   
Sbjct: 668 ---------------------------QKLKSTYVDALPTMVSSRTGRIHTSYNQAVAAT 700

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I         +R   +      +++ AD + IE R++A  +G+    +
Sbjct: 701 GRLSSTNPNLQNIPIRTPRGREIRKAFVPDSADFQILSADYSQIELRIMAAFSGDASMTE 760

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++ TT ++ F V   +VT D R   K++   + Y   A     +A   G+   
Sbjct: 761 AFNQGRDIHATTASKVFQVPLEEVTSDMRRKSKMVNFGIIYGISAF---GLAQRLGIPRG 817

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             + +++       + +     +   +     A E  ++ T   R ++     +SR    
Sbjct: 818 EASEIIRA------YFEEFPAVKGYMDKVVNDAREREYVETILGR-RRYLPDINSRNQTN 870

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570
                +        G A    K   + +  +M K+K    ++L     LV+
Sbjct: 871 RGYAERNAINAPIQGSAADMIKVAMINIHDFMAKEKLKSRMILQVHDELVF 921


>gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
 gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
          Length = 987

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 116/661 (17%), Positives = 194/661 (29%), Gaps = 164/661 (24%)

Query: 46  DCVHDPVMPQV---------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           D    P  P           LK  LE+  V  V  N  F+  +         PI     T
Sbjct: 445 DLGGTPPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIFARHGIAMAPID---DT 501

Query: 97  LVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           ++++   G           AL+                 K +             R    
Sbjct: 502 MLISYVLGTGLHGHGMDELALRHLGHTT----------IKYDEVTGTGKSRITFDRVPLD 551

Query: 156 LFGEYCKGDVTVTREIFKRLE----------PLSSKEQELWYLDQTINDRGYCVDVALAH 205
              +Y   D  +T  + + L+             + E+ L  +   +  RG  VD A+  
Sbjct: 552 KARDYAAEDADITLRLHRVLKHDLVRQHMVTLYETVERPLVPVVARMESRGVLVDRAVLR 611

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261
            ++        +++ E++ L      +    ++L   LF E  L      ++    T   
Sbjct: 612 QMSSDFAQRMLEMEAEIQKLA-PRAFNVGSPKQLGEILFDEMKLPGGSKGKSGAWGTDSG 670

Query: 262 VLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
           VL    +     A +V + R  A                               +     
Sbjct: 671 VLEGLAEQGVEIAQKVLDWRQLA-------------------------------KLKSTY 699

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375
                 Q   R  R H       T      ++DP+   I         +R   +A  G  
Sbjct: 700 TDALAEQIDARTGRVHTSFALAATATGRLSSTDPNLQNIPIRTEEGRKIRRAFVARPGHL 759

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D + IE R++A MAG     +AF  G D++  T ++ F V   Q+T + R   K +
Sbjct: 760 LLSVDYSQIELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQMTSEIRRKAKAI 819

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y         +    G+                       F R   E  PE    
Sbjct: 820 NFGIIYGISGF---GLGRQLGITPGEAGA----------------FIRQYFERFPE---- 856

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
              + T  E  K   R+ H  V+ L                     +R  +  +  K   
Sbjct: 857 ---LQTYMETTKAFARE-HGYVTTL-------------------LGRRCWIQGIREKA-- 891

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                  P+ R+         R  +N                    +Q  + DI+   M 
Sbjct: 892 -------PARRAYA------ERQAINAP------------------IQGTAADIIKRAMA 920

Query: 616 NAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-G 667
                    K    ++L VHDE++ E P+   E  A+++  +M        G+PL AE G
Sbjct: 921 RIEPALAAAKLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVMEGAA--GLGVPLVAEAG 978

Query: 668 Y 668
           +
Sbjct: 979 W 979


>gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening
           disease-associated, Peptide, 207 aa]
          Length = 207

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 106/205 (51%), Positives = 128/205 (62%), Gaps = 2/205 (0%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           + LFID ETRSP  L K G+  YAE   + L A+ +D  PV+LWD      +P  L + L
Sbjct: 3   SKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQYL 62

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL+    
Sbjct: 63  RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPEH 122

Query: 122 --KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K EEGK LIARFCKG      YD  + NH +AW LF EYCK DV  TRE+FK L PL+
Sbjct: 123 LTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPLN 182

Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204
            +E+ LW LDQ INDRGY +D+ L 
Sbjct: 183 PEERTLWLLDQEINDRGYRIDLDLV 207


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 178/539 (33%), Gaps = 81/539 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113
           LK   E  ++  +  N  ++  +L    N DI +   +   ++A     P     +  + 
Sbjct: 407 LKPFFEAENILKIGQNLKYDLKILA---NYDIEVRGQLFDTMIAHYLLNPDMRHNMDLLA 463

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           EA    S      + LI +  KG+   C              L  EY   D  VT ++  
Sbjct: 464 EA--YLSYAPVAIETLIGKKGKGQLSMC---------SVPAELQKEYAVEDTDVTLQLKH 512

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              PL  K          E  L  +   +   G  VD A    L++ ++ +   L   + 
Sbjct: 513 TFLPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTAFLSQLSKEINTDLIALQTAIF 572

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFN 278
               G   +    ++L   LF +  L  +          T + VLS      P    V  
Sbjct: 573 EQA-GESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASQHPIVANVLE 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          F    +         P +  PR  R H  
Sbjct: 632 -------------------------------FRALQKLQSTYTDALPREVNPRTGRIHTT 660

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392
             Q +T      ++ P+   I         +R   +   E   L+ AD + IE R++A +
Sbjct: 661 FMQAVTATGRLSSNQPNLQNIPIRTPRGSQIRKAFVPRDENYTLLSADYSQIELRIIAAL 720

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + E   ++AF  G+D++ +T A+ F V    VTK+QR+  K +   + Y   A     ++
Sbjct: 721 SEETHMIEAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSA---IGLS 777

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             T L+ +    L+ T    + +   + +         EH      +G      ++    
Sbjct: 778 QQTSLSRSQSKELIDTYY--QTYPKLKTYIEQQIFFAREHGYVQTLLGR-----RRYLPD 830

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570
            HSR   +     +        G A    K   V +   ++K+K    ++L     L++
Sbjct: 831 IHSRNQVVRGAAERNAVNAPIQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDELLF 889


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/637 (14%), Positives = 174/637 (27%), Gaps = 150/637 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  +  +  N  ++  +      + +        +  A + G+         + 
Sbjct: 416 LKPMLEDDAILKIGQNMKYDAKIFARH-GIRVAPFDDTMLMSYALNAGI-HGHGMDTLSE 473

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +  S +    KEL+       T            R       +Y   D  +T  ++   +
Sbjct: 474 RYLSHQPIPIKELLGTGKSAVT----------FDRVPVADAVKYAAEDADITLRLWHVFK 523

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P   +E          + L  +   +   G  VD      ++     +  +L++E+  L 
Sbjct: 524 PQLHREKVTTVYETLERPLSPVLAQMERNGIKVDRETLSRMSGKFAQKMAQLEEEIHELA 583

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   LF E GL      +T    T   VL           +V + R  
Sbjct: 584 -GRKFNVGSPKQLGEILFDEMGLDGGKRGKTGAYATGADVLEDLATEHDLPARVLDWR-- 640

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          S+              P   R H    Q 
Sbjct: 641 -----------------------------ALSKLKSTYTDALQDHIDPDTGRVHTSYVQT 671

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                   ++DP+   I         +R   +A  G  LV  D + IE R+LA +A    
Sbjct: 672 GATTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIDA 731

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  G+D++  T +  F+V   ++T + R   K +   + Y         +A    +
Sbjct: 732 LRQAFRDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGF---GLARNLRI 788

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                               A+ F     E  P               +K          
Sbjct: 789 PRGE----------------AQGFIDRYFERFP--------------GIKTYMD------ 812

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                             K +   K          +      +  P   +   R     R
Sbjct: 813 ------------------KTVDFAKEHGFVQTLFNRK-----IHTPEISAKGPRAGFARR 849

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIV 633
           + +N                    +Q  + DI+   M+            ++L VHDE++
Sbjct: 850 AAINAP------------------IQGTAADIIRRAMIRMPAAIEGMPAKMLLQVHDELI 891

Query: 634 CETPDTDEFNASMLYH-LMTSNPSWAK--GLPLKAEG 667
            E               +M +    A    +PL  + 
Sbjct: 892 FEVEAGAADALIATARDVMEAAADPAVKIDVPLVVDA 928


>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
 gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
          Length = 950

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/634 (13%), Positives = 181/634 (28%), Gaps = 136/634 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           +LK  LE+  +  +  N  ++  +      + +        +  A  +GL         +
Sbjct: 421 ILKPVLEDESLLKIGQNMKYDWKIFARH-GIRVAPFDDTMLMSYAMFSGL-HGHGMDALS 478

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +    KELI         +  +D+              Y   D  +T  ++   
Sbjct: 479 EEYLRHRPIPIKELIGTG----KAQITFDK------VPLDKATAYAAEDAEITYRLWAAF 528

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P   +          E+ L  +   +   G  VD  +   ++ +       L++E+++L
Sbjct: 529 KPQLHRAQVTTVYETLERPLVPVLAEMEMAGVKVDPTVLARMSNVFAQRMAGLEEEIQAL 588

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF + G+   +  +T      ++   +      + +++  A  
Sbjct: 589 A-GQSFNVGSPKQLGEILFDKLGVPGGEKGKTG---AYATGADVLEDITTMEDHKQAADL 644

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           +A +                  L +   ++              P   R H        +
Sbjct: 645 AAKV------------------LDWRQIAKLKSTYTDALQTHVNPDTGRVHTSYSIAGAN 686

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                ++DP+   I         +R   +A+ G ++V  D + IE R+LA +A       
Sbjct: 687 TGRLASTDPNLQNIPVRSDEGRRIREAFVATPGHRIVSLDYSQIELRILAHVANLPEMKA 746

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T +  F V    +    R   K +   + Y        +          
Sbjct: 747 AFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINFGVIYGISGFGLARNLRI------ 800

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                           +A+ F     E  P                    R         
Sbjct: 801 -------------PRSEAQGFIDRYFERFP------------------GIRAYMDETVAF 829

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                    +     + +  RK                 +  P   +         R+ +
Sbjct: 830 --------AKANGFVQTLFGRK-----------------IHTPEINAKGPGAGFAKRAAI 864

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIVCET 636
           N                    +Q  + DI+   M+            ++L VHDE++ E 
Sbjct: 865 NAP------------------IQGAAADIIRRAMIRMPAAIAHLPAKMLLQVHDELIFEV 906

Query: 637 PDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            ++  +   +    +M      A    +PL  + 
Sbjct: 907 AESAVDPLIATARAVMEGAADPAVRLSVPLVVDA 940


>gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
 gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
          Length = 1033

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 111/639 (17%), Positives = 196/639 (30%), Gaps = 146/639 (22%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
              LK  LE+  +  +  N  F   +L       I +       +++ +         L A
Sbjct: 505  DALKPLLESAGLAKIGFNIKFTAVLLAQH---GITLRNIDDLQLMSYALDAGRGSHGLDA 561

Query: 112  VGEA-LKLSSQKMEE----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            + E+ L  +   + E    GK  I                    +       EY      
Sbjct: 562  LSESNLGHTLHALGELTGSGKAKIG-----------------FDQVPIERATEYAGERAD 604

Query: 167  VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            V   +++ L+P    E+           L  +   +  RG  +D ++   L+        
Sbjct: 605  VALRLWRVLKPRLVAERMMAVYETLERPLVGVLARMERRGISIDRSVLSRLSADFAQTAA 664

Query: 217  KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            +++ E+  L  G   +    ++L   LF + GL     T+T      +       +    
Sbjct: 665  RIEAEIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHE 723

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            F                           R  L +   S+         P    P+  R H
Sbjct: 724  FP--------------------------RKILDWRQVSKLRSTYTDALPNYVHPQTQRVH 757

Query: 337  EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                   T      +++P+   I         +R   IAS G KLV AD + IE R+L+ 
Sbjct: 758  TTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIASPGYKLVSADYSQIELRLLSE 817

Query: 392  MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +A      KAF+ G D++  T +  F V    +  + R   K +   + Y   A     +
Sbjct: 818  VAEVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAF---GL 874

Query: 452  ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
            A+  G+        +K       +E       +M E                    + + 
Sbjct: 875  ANQLGIPREEAGAYIK-----RYFERFPGIRAYMDET-------------------RDFC 910

Query: 512  QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            + H  V  L+                    ++   P +             PS R+   R
Sbjct: 911  RAHGYVETLF-------------------GRKCHYPDIKASN---------PSIRAFNER 942

Query: 572  DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
               N R                 G   + I +A+ R    E  +   K    ++L VHDE
Sbjct: 943  AAINARL---------------QGSAADIIRRAMGR---MEDALAEKKLSAQMLLQVHDE 984

Query: 632  IVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            ++ E PD +      ++ H+M   P  A    +PL+ + 
Sbjct: 985  LIFEVPDDEVAATLPVVRHVMQDAPFPAVLLNVPLQVDA 1023


>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
 gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
          Length = 937

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/640 (15%), Positives = 170/640 (26%), Gaps = 155/640 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114
           LK  LE+  +  +  N  ++  +L        PI   +     + A  +G     +    
Sbjct: 414 LKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L             I         +  +DR              Y   D  VT  ++K 
Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVEQAVCYAAEDADVTFRLWKL 519

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +P   +          E+ L  +   +   G  VD      ++     +   L+ E+ +
Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHA 579

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF + GL      +     T   VL            +V + 
Sbjct: 580 LAGG-PFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+              P   R H   
Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                +     ++DP+   I         +R   +A  GK LV  D + IE R+LA +A 
Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIAD 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  G D++  T +  FNV    +    R   K +   + Y        +    
Sbjct: 728 IPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLAR---- 783

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                          +      DA+ F     E  P                        
Sbjct: 784 ---------------NLRIPRADAQGFIDRYFERFP------------------------ 804

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +       NG       RR               +  P   +       
Sbjct: 805 ----GIRGYMDETISFAKANGHVETLFGRR---------------INTPEINAKGPGAGF 845

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630
             R+ +N                    +Q  + D++   M+   KA       ++L VHD
Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKAIRGMPATMLLQVHD 887

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667
           E++ E  +         +  +M      A    +PL  E 
Sbjct: 888 ELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEA 927


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 109/630 (17%), Positives = 192/630 (30%), Gaps = 132/630 (20%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
            LK  LE+     + HN  ++  VL       I +  + CT+ ++ +             +
Sbjct: 494  LKGMLEDGGTLKIGHNVKYDAAVLARH---GITVAPYDCTMCMSYALDAGRGGHGMDELS 550

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +K          E+  +       +  +DR              Y   D  VT  +++ L
Sbjct: 551  IKYLGHTPIAFTEVAGKG----KSQITFDR------VPLEAATAYAAEDADVTLRLWRVL 600

Query: 176  EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +P    E          + L  +   +  RG  +D A    L+        +L+ E+  L
Sbjct: 601  KPRLPSEGMTTVYETLERPLIAVLARMEARGISIDRATLARLSSEFAQGAARLEDEISGL 660

Query: 226  TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              G   +    +++   LF +  L     T T      ++      +A      ++ A  
Sbjct: 661  A-GEKINVGSPKQIGDLLFGKMQLPGATKTPTGAWSTKANVLDELAEAGHELPQKILA-- 717

Query: 286  SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                    +   S+         P    P   R H       T 
Sbjct: 718  ------------------------WRQLSKLRSTYTDALPNYVNPTTHRVHTSYALAATT 753

Query: 346  LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                 +S+P+   I         +R   +A  G KLV AD + IE R+LA +A      +
Sbjct: 754  TGRLSSSEPNLQNIPIRTEEGRRIRRAFVAVPGTKLVSADYSQIELRLLAEIAEIPALRQ 813

Query: 401  AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+  G+  +
Sbjct: 814  AFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQLGIPRD 870

Query: 461  TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                 +K       + +     R   +    +  E  ++ T                   
Sbjct: 871  EAGQYIK------RYFERFPGIRAYMDETRAYCREHGYVETLFG---------------- 908

Query: 521  WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                 +R   P +             PS R+   R   N R   
Sbjct: 909  ---------------------RRCHYPDIAASN---------PSIRAFNERAAINARL-- 936

Query: 581  NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                          G   + I +A+ R    EG +        ++L VHDE+V E PD +
Sbjct: 937  -------------QGTAADIIRRAMIR---MEGALADAGLSARMLLQVHDELVFEVPDAE 980

Query: 641  -EFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             E    ++  +M +    A  L  PL+ E 
Sbjct: 981  VEATLPVVRRVMETAARPAVELAVPLQVEA 1010


>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
 gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
          Length = 927

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/592 (17%), Positives = 176/592 (29%), Gaps = 88/592 (14%)

Query: 7   DFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   P +L D          L   L 
Sbjct: 354 DTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQALA---QLAPLLT 409

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  +  +  ++  V++      I +  +    +L        +          +   
Sbjct: 410 DPAVRKLGQHGKYDLHVMRRH---GIALAGYADDTLLESFVLNSGS----------ARHD 456

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175
           M+   +    +   K E       +     + +      Y   D  +T  + + L     
Sbjct: 457 MDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDATRYAAEDADITLRLHQVLGKRLA 516

Query: 176 -EPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            EP         E  L  + + I   G CVD A     +  +        Q+   L  G 
Sbjct: 517 AEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 575

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 576 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 623

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L +   ++         P    P+  R H    Q    
Sbjct: 624 -------------------RVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 664

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 665 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 724

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 725 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 781

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 782 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 834

Query: 521 WNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                +A       G A  II R    V        +  L++ L     LV+
Sbjct: 835 RAGAERAAINAPMQGTAADIIKRAMVSVDGWIADHAQRALMI-LQVHDELVF 885


>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
 gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 965

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/565 (16%), Positives = 173/565 (30%), Gaps = 61/565 (10%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----LKEALENTDVTIVAHNSYFE 76
           +   AE+    LFA          W+ V   +        LK  LEN ++  +  N  ++
Sbjct: 405 VAAQAENAQGDLFAESEQSSE-SRWEPVVGQLNKAECLSQLKPLLENPEIKKIGQNIKYD 463

Query: 77  RTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
            T+     N  I +       +L +              A +         +++  +   
Sbjct: 464 LTI---FANNGINMQGVTFDTMLESYVLNSTGRHNMDDLAERYLGHHTIAFEDIAGKGKN 520

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTIND 194
             T + +  +    +              +         L  L    E  L  +   I  
Sbjct: 521 QLTFDQIELKKAAEYAAEDADVTMKLHQTLWREVAQSPELVKLYQEMELPLVSVLSRIER 580

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +D       ++    + T L+ +   L  G   +    ++L+  LF + GL +   
Sbjct: 581 NGVLIDSRALLAQSKEFSQKLTALENKAHELA-GQHFNLASTKQLQEILFDKLGLPVLKK 639

Query: 255 TET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           T      T + VL            +  +R                              
Sbjct: 640 TPKGAPSTNEEVLEELAYEHELPKLLVEHR------------------------------ 669

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
            G S+         P     +  R H    Q +T      +SDP+   I         +R
Sbjct: 670 -GLSKLKSTYTDKLPQMVNRKTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIR 728

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              IA +G K++ AD + IE R++A ++ ++    AF  G+D++ +T A  F +A   VT
Sbjct: 729 QAFIARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVT 788

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            +QR   K +   L Y   +     ++   G+        +                +  
Sbjct: 789 AEQRRSAKAINFGLIYGMSSF---GLSRQLGIARGDAQRYMDLYFQRYP------GVQTF 839

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
             N  E A    ++ T   R +       S  +       +        G A    KR  
Sbjct: 840 MTNIREKAKSQGYVETLFGR-RLYLPDIQSANAMRRKAAERVAINAPMQGTAADIIKRAM 898

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVY 570
           + +     D  ++++++     LV+
Sbjct: 899 IDIDKAITDDPDILMIMQVHDELVF 923


>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
 gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
          Length = 937

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/640 (15%), Positives = 170/640 (26%), Gaps = 155/640 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114
           LK  LE+  +  +  N  ++  +L        PI   +     + A  +G     +    
Sbjct: 414 LKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L             I         +  +DR              Y   D  VT  ++K 
Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVEQAVCYAAEDADVTFRLWKL 519

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +P   +          E+ L  +   +   G  VD      ++     +   L+ E+ +
Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHA 579

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF + GL      +     T   VL            +V + 
Sbjct: 580 LAGG-PFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+              P   R H   
Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                +     ++DP+   I         +R   +A  GK LV  D + IE R+LA +A 
Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIAD 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  G D++  T +  FNV    +    R   K +   + Y        +    
Sbjct: 728 IPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLAR---- 783

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                          +      DA+ F     E  P                        
Sbjct: 784 ---------------NLRIPRADAQGFIDRYFERFP------------------------ 804

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +       NG       RR               +  P   +       
Sbjct: 805 ----GIRGYMDETIAFAKANGHVETLFGRR---------------INTPEINAKGPGAGF 845

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630
             R+ +N                    +Q  + D++   M+   KA       ++L VHD
Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKAIRGMPATMLLQVHD 887

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667
           E++ E  +         +  +M      A    +PL  E 
Sbjct: 888 ELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEA 927


>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
 gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
          Length = 937

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/640 (15%), Positives = 170/640 (26%), Gaps = 155/640 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114
           LK  LE+  +  +  N  ++  +L        PI   +     + A  +G     +    
Sbjct: 414 LKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L             I         +  +DR              Y   D  VT  ++K 
Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVEQAVCYAAEDADVTFRLWKL 519

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +P   +          E+ L  +   +   G  VD      ++     +   L+ E+ +
Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHA 579

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF + GL      +     T   VL            +V + 
Sbjct: 580 LAGG-PFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+              P   R H   
Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                +     ++DP+   I         +R   +A  GK LV  D + IE R+LA +A 
Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIAD 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  G D++  T +  FNV    +    R   K +   + Y        +    
Sbjct: 728 IPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLAR---- 783

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                          +      DA+ F     E  P                        
Sbjct: 784 ---------------NLRIPRADAQGFIDRYFERFP------------------------ 804

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +       NG       RR               +  P   +       
Sbjct: 805 ----GIRGYMDETIAFAKANGHVETLFGRR---------------INTPEINAKGPGAGF 845

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630
             R+ +N                    +Q  + D++   M+   KA       ++L VHD
Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKAIRGMPATMLLQVHD 887

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667
           E++ E  +         +  +M      A    +PL  E 
Sbjct: 888 ELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEA 927


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 96/640 (15%), Positives = 175/640 (27%), Gaps = 159/640 (24%)

Query: 46  DCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           D     +  +     L   LE+  +  +  N  ++  +      L I +     T++L+ 
Sbjct: 395 DLAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKI---FAQLGINVAPIDDTMLLSY 451

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNK---PNHREAWRLF 157
           +               L    M+   E            + L    K      +      
Sbjct: 452 AMHA-----------GLHGHGMDTLSE--RYLSHTPIPIKPLLGTGKSAITFDKVPLADA 498

Query: 158 GEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTL 207
            +Y   D  +T  +++  +P   +          E+ L  +   +   G  VD      +
Sbjct: 499 VKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVSVLAAMERSGVKVDRDTLSRM 558

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263
           +     +   L+ E+  L  G   +    ++L   LF E GL      +T    T   VL
Sbjct: 559 SNAFAQKMAGLEDEIYELA-GRKFNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVL 617

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                      +V + R                                 S+        
Sbjct: 618 EDLATEHDLPARVLDWRQL-------------------------------SKLKSTYTDA 646

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
                 P   R H              ++DP+   I         +R   +A  GK LV 
Sbjct: 647 LQDHINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKALVA 706

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
            D + IE R+LA +A      +AF+ G D++  T +  F V   ++T D R   K +   
Sbjct: 707 LDYSQIELRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFG 766

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y        +                          +A+ F     E  P        
Sbjct: 767 VIYGISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP-------- 799

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                          +T  N     A++   V  ++ +K     
Sbjct: 800 -----------------------------GIRTYMNDTKAFAKEHGFVQTLFGRK----- 825

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +  P   +   R     R+ +N                    +Q  + D++   M+   
Sbjct: 826 -IHTPEINAKGPRAGFAQRAAINAP------------------IQGTAADVIRRAMIRMP 866

Query: 619 KA----GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654
            A       ++L VHDE++ E     E +       +  N
Sbjct: 867 HAIKDLPATMLLQVHDELLFEVEKGAEDDLIAAARQVMEN 906


>gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
 gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
          Length = 885

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 96/631 (15%), Positives = 198/631 (31%), Gaps = 143/631 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAV 112
           ++E L + D+     + +  RT L   ++  I +      + LA     P     ++  +
Sbjct: 366 VREWLADADMEKAGFDLH--RTELSLAWH-GIALKGISFDIQLAAYLLDPTDSTQSISGL 422

Query: 113 GEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TR 169
                L + + +E   +  +  K       +   +  +  +A R      + ++      
Sbjct: 423 CGKYGLPTVQADES--VYGKGAKFKLPEAGVLHGHIASKTDAVRSIAAIQREELEKTGMH 480

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +++  L      EQ L  +   +  +G   D ++   L   ++   + +  ++ +L  G+
Sbjct: 481 KLYYDL------EQPLSRVLAGMELQGIRCDASVIEQLGAELESRISDIMTKVYTLA-GM 533

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +     +L   LF + GL +   T+T         +KL P                  
Sbjct: 534 EFNINSPRQLGEVLFEKLGLPVIKKTKTGYSTDADVLEKLEP------------------ 575

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             + +         +   L F   ++           +  P   + H    Q I      
Sbjct: 576 -YHEI---------IPSILLFRQLAKLQSTYVEGLLKEIRPNTGKIHTYYRQTIAATGRL 625

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +  P+   I         +R   + SE G  ++ AD + IE RVLA ++G++   +AF 
Sbjct: 626 SSQYPNLQNIPIRLEEGRQIRKAFVPSEPGWFMLAADYSQIELRVLAHISGDEGLKEAFV 685

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T +  F V P  V  + R   K +   + Y         +++   +     A
Sbjct: 686 QDLDIHTKTASDVFGVRPEDVDANMRRQAKAVNFGIVYGISDF---GLSNNLNITRKEAA 742

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             ++                                            Q  +    +   
Sbjct: 743 QFIE--------------------------------------------QYFAAFQGVRRY 758

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNT 582
           +     Q   +G      +RR                 LP  ++  +       R+ +NT
Sbjct: 759 MDNIVAQARTDGYVTTLLERRRY---------------LPEIKASNFNIRSFAERTAMNT 803

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET 636
                              +Q  + DI+   M+   +          ++L VHDE+V E 
Sbjct: 804 P------------------IQGTAADIIKLAMVRMDEQLRARGLRSRMLLQVHDELVFEV 845

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           P  + E    ++  +M S       +PLKA+
Sbjct: 846 PADELELMKELVPQVMESAIK--LDVPLKAD 874


>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
          Length = 927

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 99/591 (16%), Positives = 177/591 (29%), Gaps = 86/591 (14%)

Query: 7   DFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S   L     G+   AE      + F   F   P +L D          L   L 
Sbjct: 354 DTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQALA---QLAPLLT 409

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  +  +  ++  V++      I +  +    +L        +          +   
Sbjct: 410 DPAVRKLGQHGKYDLHVMRRH---GIALAGYADDTLLESFVLNSGS----------ARHD 456

Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175
           M+   +    +   K E       +     + +      Y   D  +T  + + L     
Sbjct: 457 MDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDATRYAAEDADITLRLHQVLGKRLA 516

Query: 176 -EPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            EP         E  L  + + I   G CVD A     +  +        Q+   L  G 
Sbjct: 517 AEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 575

Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L+  LF E  L           +T +  L +                    
Sbjct: 576 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 623

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L +   ++         P    P+  R H    Q    
Sbjct: 624 -------------------RVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 664

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   +A  G+KL+  D + IE R++A ++G+   + 
Sbjct: 665 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 724

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE+G D++  T A  F      V+ D+R   K +   L Y   A     +A   G+   
Sbjct: 725 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 781

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    +           R   E   + A +  ++ T   R +      ++     
Sbjct: 782 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 834

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570
                +A       G A    KR  V +  ++       +++L     LV+
Sbjct: 835 RAGAERAAINAPMQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDELVF 885


>gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
 gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
          Length = 937

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/640 (15%), Positives = 171/640 (26%), Gaps = 155/640 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114
           LK  LE+  +  +  N  ++  +L        PI   +     + A  +G     +    
Sbjct: 414 LKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L             I         +  +DR              Y   D  VT  ++K 
Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVEQAVCYAAEDADVTFRLWKL 519

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +P   +          E+ L  +   +   G  VD      ++     +   L+ E+ +
Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHA 579

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF + GL      +     T   VL            +V + 
Sbjct: 580 LAGG-PFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+              P   R H   
Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                +     ++DP+   I         +R   +A  GK LV  D + IE R+LA +A 
Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIAD 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  G D++  T +  FNV    +    R   K +   + Y        +    
Sbjct: 728 IPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLAR---- 783

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                          +      DA+ F     E  P                        
Sbjct: 784 ---------------NLRIPRADAQGFIDRYFERFP------------------------ 804

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +   + +       NG       RR               +  P   +       
Sbjct: 805 ----GIRGYMDETIAFAKANGHVETLFGRR---------------INTPEINAKGPGAGF 845

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630
             R+ +N                    +Q  + D++   M+   KA       ++L VHD
Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKAIRGMPATMLLQVHD 887

Query: 631 EIVCETPD-TDEFNASMLYHLMTSNPSWA--KGLPLKAEG 667
           E++ E  +   +     +  +M      A    +PL  E 
Sbjct: 888 ELLFEVEEKAADALIERVREVMEGAADPAVKLTVPLTVEA 927


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 105/633 (16%), Positives = 193/633 (30%), Gaps = 138/633 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  VA N+ ++  VL       I +     T++++           + E  
Sbjct: 418 LKPLLEDPSVLKVAQNAKYDIAVLSRY---GIEVGPIDDTMLISYVLEAGLHNHGMDELS 474

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           KL         + +A   K +                      Y   D  VT  +++ L+
Sbjct: 475 KLGLDHEPIAFKSVAGTGKAQKS---------FKYVGLSEATCYAAEDADVTLRLWEHLK 525

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P  + E          + +  +   +   G  VD      L+        +L+ E   L 
Sbjct: 526 PRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERLRQLSNEFGQRMAELEAEAHRLA 585

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    +++   LF E GL    +T T    T   +L        +  ++  +  +
Sbjct: 586 -GRPFNLGSPKQIGEVLFKEMGLASGRVTATGAFSTDASMLEDLAAQGHELPRILLDWRQ 644

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            S+      + LV A++                               +  R H      
Sbjct: 645 LSKLKGTYTDALVAAISE------------------------------QTGRVHTSFSLA 674

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            T      +SDP+ + I         +R   +A  GK L+ AD + IE R+LA +     
Sbjct: 675 STTTGRLSSSDPNLMNIPIRTEEGRKIRRAFVAEPGKVLISADYSQIELRLLAHIGDIPQ 734

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+  G+
Sbjct: 735 LKRAFREGLDIHAMTASEMFGVPVEGMPSETRRRAKAINFGIIYGISAF---GLANQLGI 791

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             +     +KT                                         + ++   +
Sbjct: 792 PQDEAGAYIKT-----------------------------------------YFERFPGI 810

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               +   QA             R +  V  ++              GR +    V +  
Sbjct: 811 RAYMDRTKQAA------------RSQGFVHTIF--------------GRKVNIPAVKSKS 844

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                   +        G   + + +A+ R     G + A      ++L VHDE+V E P
Sbjct: 845 QAERAFGDRAAINAPIQGSAADVMRRAMIR---MPGALKAEGLTARMLLQVHDELVFEAP 901

Query: 638 DTDEFNASMLYH-LMTSN--PSWAKGLPLKAEG 667
           + +      +   +M     P+ A  +PL  E 
Sbjct: 902 EAEAEAVIRIAKAVMEKAAEPAVAISVPLVVEA 934


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/596 (17%), Positives = 192/596 (32%), Gaps = 89/596 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE---LWDCVHDPVMPQVL 57
           + T   D ET S             +     L    F     +   +          ++L
Sbjct: 373 LKTFCFDTETTS------------LDTKEARLIGLAFAFEKQKGFYVAVPADPEEAREIL 420

Query: 58  KEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +E     EN  +  V HN  ++  VLK      + +H  +   +LA S   P        
Sbjct: 421 QEFRAVFENEQIQKVGHNLKYDLAVLKWH---GVGVHGKLFDTMLAHSLIEPE------- 470

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN---HREAWRLFGEYCKGDVTVTREI 171
                   M+   E+   +      + + D                 EY   D  VT ++
Sbjct: 471 ----MRHGMDYMSEVYLGYSPISITKLIGDEKSKQLNMADVPVAKVAEYAAEDADVTWQL 526

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +++LEPL             E  L  +   +   G  VD +     +  +  E    +Q 
Sbjct: 527 WEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEFSTQLSKEMANHEQT 586

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  L  G   +     +L   LF +  L + +  + T     ++N+              
Sbjct: 587 IYRLA-GQEFNLNSPRQLGEILFDK--LKISENAKKTKTGQYATNE-------------- 629

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                      TL++       ++  L + GA++         P        R H   +Q
Sbjct: 630 ----------QTLMDLAADHEIVQRLLDYRGATKLKSTYADALPGTIWKPTGRVHTTFNQ 679

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
            +T      + +P+   I         +R   +   E   L+ AD + IE R++A ++ E
Sbjct: 680 AVTTTGRLNSQNPNLQNIPIRTEQGKEIRKAFVPRNEDYVLLSADYSQIELRIIAALSHE 739

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           Q  L+ F    D++  T AR + V   QVT + R   K++   + Y   A     +A   
Sbjct: 740 QGMLEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYGISAF---GLAQRL 796

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +     A +++   A  ++     + R   +   +H   +   G      ++  R   S
Sbjct: 797 RIPRKEAATIIEQYFA--QYPGIAKYMRDTIDFAKQHGYVETVTGR-----RRYMRDIRS 849

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570
             + +     +        G A    K   + +   + K K    ++L     LV+
Sbjct: 850 ANAAVRGGAERNAINAPIQGTAADMIKIAMINIHGELTKRKLKSRMLLQVHDELVF 905


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/642 (15%), Positives = 200/642 (31%), Gaps = 157/642 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
           +  +   EN  +  V  N  ++  VL+   N  + +   +   ++A     P        
Sbjct: 403 EQFRPFFENEQIAKVGQNLKYDLKVLQ---NYGVEVQGALFDTMIAHYLLNPDMRHNMDI 459

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            +    +      + LI +     +      R  P          EY   D  VT ++  
Sbjct: 460 LSETYLNYTPIAIESLIGKGKAQRS-----MRTVPIDE-----VKEYAVEDADVTWQLKN 509

Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             +            +  E  L  +   +   G  +DV      ++ +D +  +L+  + 
Sbjct: 510 VFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLETAIA 569

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
               G   +    ++L   LF +  +      T+T    T + VL+           +  
Sbjct: 570 QQA-GETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADILE 628

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                  +         P +      R H  
Sbjct: 629 WRQ-------------------------------VQKLKSTYVDALPLEVNKSTGRVHTT 657

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392
             Q +       +++P+   I         VR   IA      L+ AD + IE R++A +
Sbjct: 658 YMQTVAATGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAAL 717

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + E   +++F  GED++  T A+ FNV   +VT++QR+  K +   + Y   A     ++
Sbjct: 718 SEEHNMIESFLHGEDIHRATAAKVFNVPLEEVTREQRSHAKTVNFGIIYGVSAF---GLS 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           + T L+ +                                           + +   +  
Sbjct: 775 AQTDLSRS-----------------------------------------ESKELIDTYYA 793

Query: 513 KHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            +     L N +++  E   E+G    I  +RR +P ++                     
Sbjct: 794 TYPN---LRNYINRQIEFAREHGYVETILGRRRYLPDIHSHNQ---------------VV 835

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625
             G  R+ +N                    +Q  + DI+   M+         K    ++
Sbjct: 836 RGGAERNAVNAP------------------IQGSAADIIKIAMIRIHNQLQAQKLQTRML 877

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           L VHDE+V + P T+ E    ++   M +  + A  +PL A+
Sbjct: 878 LQVHDELVFDVPKTELELVKPLIKDAMENAFTLA--VPLVAD 917


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/548 (16%), Positives = 165/548 (30%), Gaps = 82/548 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKEALENTDVTIVA 70
           D    G           +       +P E W             ++++   EN  +  + 
Sbjct: 392 DTETTGFDI----FNDRIVGMSLAVNPFEAWYIPFKEENTAEYTEIVRPLFENDRIAKIG 447

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            N  F+  VL+    L+I   ++  T++L       S       A K  + K  E + LI
Sbjct: 448 QNIKFDLMVLRQ-LGLEIRGRKY-DTMILHYLLDPESRHNMNALAEKYLNYKPIEIETLI 505

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181
            +  K  T + +                EY   D  VT  +   L P   +         
Sbjct: 506 GKGSKQLTMDLVNV----------ERVKEYAAEDADVTLRLKHALYPQIEELGLQHLYFE 555

Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E+ +  +   I   G  +D       +  +     +L+  +         +     +L 
Sbjct: 556 IEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICEEAGESQLNINSARQLG 615

Query: 241 TWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
             LF +  +     +T+T    T +  L S          +                   
Sbjct: 616 EVLFGKMRIAEKPKMTKTKQFCTDEDYLQSFAHKHRIVDLILE----------------- 658

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                         + G  +         P     R  R H   +Q +T      +++P+
Sbjct: 659 --------------YRGVKKLLSTYVEALPQLVNRRTGRIHTSFNQAVTATGRLSSTNPN 704

Query: 356 PLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +R   I   E   L+ AD + +E R++A ++G++  + AF  GED++
Sbjct: 705 LQNIPVREEMGRRIRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLIAAFAHGEDIH 764

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A+ FN    +VT ++R   K     + Y   A    +      +       ++   
Sbjct: 765 AATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQ---RLEIPRKEAKEIIDGY 821

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
            A           +   +N    A E+ F+ T   R ++      S  +       +   
Sbjct: 822 FASYPK------VQEYMDNVVAKAKEEGFVSTIFGR-RRYLNDIASHNAIARGLAERNAV 874

Query: 530 QTIENGKA 537
                G A
Sbjct: 875 NAPIQGSA 882


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 109/645 (16%), Positives = 200/645 (31%), Gaps = 144/645 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           Q L   L ++D      N+ ++R +L       + +   +   +LA        L+    
Sbjct: 463 QALAPWLASSDHPKALQNAKYDRLIL---LRHGLTLGGVVMDTLLADY------LRDAAA 513

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----RLFGEYCKGDVTVTR 169
              L      +                L  + K     ++          YC  DV +TR
Sbjct: 514 KHGLDLMAQRD------YGITPTLFTDLVGKAKDGKASSFAAVPVDQAALYCAMDVHLTR 567

Query: 170 EIF-----------KRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
            +            ++L  L  + E  L  +   +   G  +DV     L+  +     +
Sbjct: 568 RLALDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQELSAELGATLER 627

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQ 272
           L+ E + +  G   +    ++L   LF   GL+ +    T+T   T   VL   +   P 
Sbjct: 628 LETEAQDV-VGTSFNLASPKQLGELLFDTLGLNRKKSRRTKTGWSTDATVLEKLEGDHPV 686

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +  +R+                                S+         P       
Sbjct: 687 VPLLLEHRVL-------------------------------SKLKSTYVEALPQLVEAET 715

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H + +Q +T      +S+P+   I      S  +R   +  EG +L+ AD + IE R
Sbjct: 716 GRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQEGWQLLSADYSQIELR 775

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +L  ++GE+   +A+  G+D++  T      +   +V+ D+R +GK +   + Y  GA  
Sbjct: 776 ILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIYGMGA-- 831

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            Q+ A  TG++       +      + +     F     E     A+   ++ T   R +
Sbjct: 832 -QRFARETGVSQVVAKDFL--AKYKQRYPKVFAFL----ELQERLALSRGYVETILGRRR 884

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                                                         D+N L  +L     
Sbjct: 885 P------------------------------------------FHFDRNGLGRLLGKD-- 900

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------ 621
               ++  + +       Q  R            +Q  S DI+   M+    A       
Sbjct: 901 --PLEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQTALQQQGLP 952

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
             ++L VHDE+V E           L      N +    +PL  E
Sbjct: 953 AQLLLQVHDELVLEVEPAALDTVRQLVVQTMEN-AMTLSVPLVVE 996


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 110/686 (16%), Positives = 204/686 (29%), Gaps = 172/686 (25%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQVLKEA 60
           D ET S             +     +    F   P + +      D      + +     
Sbjct: 377 DTETTS------------LDTFEAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAPL 424

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-L 116
           LE+  +     N  ++ +VL    N  I +   +   ++A     P     +  + E  L
Sbjct: 425 LEDASIEKTGQNMKYDISVLG---NYGIGVGGRMFDTMIAHYLLQPELRHNMDYMAEVFL 481

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--- 173
              +    E  +       G+  E +                +Y   D  +T ++     
Sbjct: 482 GYRTIHFGELFDDDKTKKSGKPIEDIRK-------VELGKLKDYACEDADITLQLKNIFG 534

Query: 174 ------RLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                  L+ L    E  L  +   +   G  +D     +  + +  E  K+++++ +  
Sbjct: 535 QKLCESSLKNLFFDIEMPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERDILA-Y 593

Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             L  +    +++   LF     +     T+T    T +  L   +   P    +  +R 
Sbjct: 594 VDLPINISSPKQIGELLFERLRIVEKPTKTKTGQYRTDEETLQKLRNRHPIIKLILEHR- 652

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G  +         P    P+ ++ H   +Q
Sbjct: 653 ------------------------------GLKKLLSTYVEALPKLINPKTNKIHTSFNQ 682

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       +S+P+   I         +R   IA  G  L+ AD + +E R++A ++G++
Sbjct: 683 TVVSTGRLSSSNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDR 742

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF +G+D++  T AR F V   +VT D R   K     + Y   A    +      
Sbjct: 743 NMLSAFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYGISAFGLSE---RLD 799

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +     A L+      E + D + +                                   
Sbjct: 800 IPRKEAAALID--GYFESFPDVKRY----------------------------------- 822

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                  + QA E+   NG                             GR L   D+ + 
Sbjct: 823 -------MEQAIEEARRNGSVQTLF-----------------------GRKLYLPDINSQ 852

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
               N   R                +Q  + DI+   M+   +A         ++L VHD
Sbjct: 853 ----NAGVRGFAERIA-----INAPIQGTAADIIKIAMIKVDEAIRHHNYRSQMMLQVHD 903

Query: 631 EIVCETP--DTDEFNASMLYHLMTSN 654
           E+V   P  + DEF  S + H M + 
Sbjct: 904 ELVFNVPTEEVDEFRQS-VKHAMETA 928


>gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 917

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 113/703 (16%), Positives = 206/703 (29%), Gaps = 172/703 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEA 60
             L +D ET SP       +     +     F     ++         D  +    ++E 
Sbjct: 340 RVLSVDTETTSPNPAMAELVGISFSNQEKTGFYVSVKNNA----SLFQDKSLNLDEVREH 395

Query: 61  L---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           L    ++ V  V  N  ++  VL+   N    ++      +LA     P           
Sbjct: 396 LGPVLSSQVPKVGQNIKYDLIVLE---NHGFVLNNIQFDTMLASYVLRPEG--------- 443

Query: 118 LSSQKMEEGKELIARFCKGETHEC----LYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172
                M+   +L   F    T          + K    +       EY   D  VT  ++
Sbjct: 444 -RRHNMD---DLAKEFLNYNTITYEDLVGTGKKKKELTDIDPEQVAEYAAEDADVTFRLY 499

Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +              L   E  L  +   +   G  +DV     L +  D E   L+ E+
Sbjct: 500 QIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHLESEI 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279
                G   +    ++L+  LF +  L +   T+T   T   VL       P   ++   
Sbjct: 560 HRQAGG-PFNIASTKELQKILFDDLKLRIVKKTQTGFSTDHEVLEELAGEHPIIEKLL-- 616

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         +   ++         P    P+  R H   
Sbjct: 617 -----------------------------DYRKYTKLKSTYVDALPKMVNPKTGRIHTSY 647

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMA 393
           +Q I       ++DP+   I         +R          +++  D + IE R++A ++
Sbjct: 648 NQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHIS 707

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L+A+  G D++  T A  + V    VT + R   KV+  ++ Y        +   
Sbjct: 708 KDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTPYGLSRNLR 767

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                 ++A++F       +P                       
Sbjct: 768 I-------------------PRDEAKSFIERYMTQYP----------------------- 785

Query: 514 HSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                 + + +    E   +NG    +  +RR V  +                       
Sbjct: 786 -----GVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKS---------------AK 825

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY--DIVL 626
               R  +N+                   +Q  S D++   M+    +  K  Y   ++L
Sbjct: 826 EAAKRIAINSP------------------IQGTSADMIKIAMIKIHEDIEKKHYKSRMLL 867

Query: 627 TVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
            VHDE+V E    + D+F AS +   M +  S    LP+  EG
Sbjct: 868 QVHDELVFEVHKKEKDDFKAS-MKKHMETAMS--LDLPIVVEG 907


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 90/538 (16%), Positives = 172/538 (31%), Gaps = 76/538 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
           ++L+   E  DV IV  N  ++ TVL +     +     +   +L+     P  A     
Sbjct: 396 ELLRPFWEKADVLIVGQNLKYDLTVLASY---GVKPKGRLFDTMLSHYVVQPELAHNMDY 452

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A    + +    ++LI         +    RN  +      +F EY   D  VT  +  
Sbjct: 453 LASVYLNYRPIPIEQLIG-------PKGRGQRNMGDLDPK-DVF-EYACEDADVTLRLMA 503

Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE               E  L  +   +   G C+D      ++        KL+ E+ 
Sbjct: 504 PLEKAMRENGVEQIFYDIEMPLMPVLARMERNGVCLDTNALQEISSEFTARMVKLEAEIY 563

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
            L  G        +++   LF E  +       +    +T + VL           ++  
Sbjct: 564 QLA-GHPFMITSPKQVGEVLFGELKIDEKAKKTKSGQYSTSEEVLVRLSHKHEIVGKILA 622

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R                               G  +         P    P+    H  
Sbjct: 623 HR-------------------------------GLKKLLSTYVEALPKLVNPQTGHLHTT 651

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q +T      +S+P+   I         +R   I   G     AD + IE R++A ++
Sbjct: 652 FNQAVTSTGRLSSSNPNLQNIPVRGEDGREIRKAFIPEAGDVFFSADYSQIELRIMAHLS 711

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   ++AF+ GED++  T AR F    ++V++D+R   K     + Y   A     +A 
Sbjct: 712 KDPHLIEAFKKGEDIHAATAARIFKKDLSEVSRDERRKAKTANFGIIYGISAF---GLAE 768

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++      L+        +       +   ++  E A    +I TA  R ++     
Sbjct: 769 RMDVSRTEARELIDN------YFSTYPKVKEYMDSSIEKARRRGYIETAFGR-RQYLADI 821

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570
           +S  + +     +        G A    K   + +    + +     ++L     L +
Sbjct: 822 NSHNAVVRGYAERVAVNAPIQGTAADIIKLAMIRIDQRLRAEGLKTKMILQVHDELNF 879


>gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 908

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 102/675 (15%), Positives = 194/675 (28%), Gaps = 161/675 (23%)

Query: 15  DLTKCGIC----KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70
           D+   G+      Y      +      +  P+  W               L + D     
Sbjct: 361 DIAGLGLYDGNKGYFLAFETLQ---SVNAEPIRQW---------------LSDADKEKWI 402

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKE 128
            + +  +  L     + +        ++LA     P  S L   G A K S   +   ++
Sbjct: 403 FDKHRAQLALS-WKGIKL--RGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQ 459

Query: 129 LIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQEL 185
           +  +  K     E L   N     E         K  +     +E++  L      E  L
Sbjct: 460 VFGKGAKFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQELYYEL------EHPL 513

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G  VD      L   +  +   +   +     G+  +    ++L   LF 
Sbjct: 514 AGVLAEMELAGIKVDKESLKQLGTEISDQLKTIMDRIYEQA-GMTFNINSPKQLGEVLFE 572

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           +  L ++  T+T         +KL P                        + +       
Sbjct: 573 KLQLPVQKKTKTGYSTDAEVLEKLAP----------------------YHDIVGD----- 605

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
             L +   ++           +  P   + H    Q I       +  P+   I      
Sbjct: 606 -ILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQYPNLQNIPIRLEE 664

Query: 361 SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   + S  G  ++ AD + IE RVLA ++G++   +AF    D++  T    F V
Sbjct: 665 GRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGV 724

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           + A+V  + R   K +   + Y        +     G+     +  +      E++    
Sbjct: 725 SEAEVDANMRRSAKAVNFGIVYGISDYGLSQ---NLGITRKEASRFI------EQYFSVF 775

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              R   ++    A    ++                                      ++
Sbjct: 776 RGVRNYMDSIIREAKTQGYV------------------------------------TTLL 799

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLT 598
            R+R                  LP   +  Y       R+ +NT                
Sbjct: 800 QRRRY-----------------LPEINASNYNLRSFAERTAMNTP--------------- 827

Query: 599 ENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651
              +Q  + DI+   M+         K    ++L VHDE++ E P+ +      L   +M
Sbjct: 828 ---IQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVM 884

Query: 652 TSNPSWAKGLPLKAE 666
               + A  +PLK E
Sbjct: 885 EQ--ALALDVPLKVE 897


>gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
          Length = 943

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 91/555 (16%), Positives = 161/555 (29%), Gaps = 80/555 (14%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           +L   L +  V  +  N+ F+  VL             +   +L                
Sbjct: 419 ILGPLLADASVLKIFQNAKFDLLVLTRAGAPQPAP---VDDTMLISYAQFAGRHG----- 470

Query: 116 LKLSSQKMEEGKELIARFCK-GETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFK 173
                Q M+E   L                RN+ P  R        Y   D  VT  ++ 
Sbjct: 471 -----QGMDELSRLYLGHTPIPYDEVTGTGRNRVPFARVDVARATAYAAEDADVTLRLWL 525

Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L P              E+ L  +   +   G  +DV     ++        +++ E++
Sbjct: 526 SLRPTLRIHHALALYEELERPLVAVLADMERAGIAIDVVELRRMSADFATRMAQMEAEIQ 585

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278
           +L  G   +    ++L   LF E GL      ++    T   VL            ++  
Sbjct: 586 ALA-GRSFNVGSPKQLGEILFDEMGLPGGKRMKSGAWGTDSSVLQDLADQGHDLPGRILA 644

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A                               +           Q  P  +R H  
Sbjct: 645 WRQLA-------------------------------KLKSTYADALVKQADPDTARVHTS 673

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               IT      +++P+   I         +R   +A+ G  L+ AD + IE R+LA +A
Sbjct: 674 FQMAITSTGRLSSNEPNLQNIPIRTEEGGRIRRAFVAAPGHVLLSADYSQIELRLLAHVA 733

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +AF  G+D++  T +  F +    +    R   K +   + Y   A     +  
Sbjct: 734 DIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAINFGIIYGISAF---GLGR 790

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQ 512
             G+        +    A           R   E   + A +  ++ T   R  + W   
Sbjct: 791 QLGIPPGEARAYIDAYFARYP------GIRAYMETVKQEAKDQGYVTTPFGR--RCWVPG 842

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYR 571
              R +       +        G A    KR  V L +       +  L+L     L++ 
Sbjct: 843 IADRSAVRRAYAERQAINAPLQGGAADIIKRAMVRLPHALASAGLDGRLLLQVHDELLFE 902

Query: 572 DVGNNRSYLNTTTRQ 586
                +  L+   +Q
Sbjct: 903 VRAGQQDALSALVKQ 917


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 162/513 (31%), Gaps = 77/513 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK    ++    VAHN  F+  VL      ++  +     T+++A             
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               LS + +  G E IA             + +   +    +  +Y   D  +T  +F 
Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479

Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + L  +++ L+ L              +   G  +D A     +  ++    +L+ + 
Sbjct: 480 YFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKC 539

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G         +L+  LF + GL     T      T + VL    +    A  +  
Sbjct: 540 YNLA-GQEFKLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          +   S+         P   L    R H  
Sbjct: 599 -------------------------------YRHLSKLKNTYTDKLPKM-LDANGRVHTS 626

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   IA  G  +V AD + IE R++A ++
Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLS 686

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  LKAF    D++  T A    ++  +V+ +QR   K +   L Y   A     +A 
Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +        +                +       E A ++ ++ T   R +    + 
Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +S+     N   +A       G A    K+  +
Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 103/592 (17%), Positives = 188/592 (31%), Gaps = 88/592 (14%)

Query: 18  KCGICKY----AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           K G   Y    A    +        + P  +        +   L     N ++T+V HN 
Sbjct: 399 KAGTGIYVPLKAPAPEL-------GEQPFAVMPLAAAKKL---LARLWNNKELTLVLHNG 448

Query: 74  YFERTVLKA---CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+  VL+           +   +    L   + L   L+ + EA  L  Q ++  K+++
Sbjct: 449 KFDYQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSFGLENLTEAQ-LGLQGLDY-KDVV 506

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181
            + C                  +      Y   D   T +++   +P   +         
Sbjct: 507 PKGC-------------TFAAVSLPQATAYAAEDADFTLQLYHVYKPALEQANLTTLFET 553

Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L  L   +  +G  +        ++ +     + + E+  L  G   +    ++L+
Sbjct: 554 LEMPLMPLLADMEAQGIFLKKEELAAFSEELAGTLARDEAEIYKL-VGHPFNIASPKQLQ 612

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             LF E  L     T+T     +S  ++L                               
Sbjct: 613 EVLFTERKLPTGKKTKTGYSTDISVLEELAAIDELPAK---------------------- 650

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                  L +  +++         P        R H    Q  T      + DP+   I 
Sbjct: 651 ------ILDYRASAKLKSGYADALPLLADA-NGRIHTSFIQTGTATGRLSSRDPNLQNIP 703

Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R    A++G KL+ AD A IE  +LA  + ++  +KAF  G D++  T A 
Sbjct: 704 IRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAFRQGTDVHAATAAL 763

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            FNV    V  D R I KV+   + Y   A    ++A+   ++    A  +        +
Sbjct: 764 IFNVPVENVVPDMRRIAKVINFGVMYGMSAF---RLANQLRISRTEAADFIT------RY 814

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
               +      E   E A E  F+ T   R ++  R  +SR         +    T   G
Sbjct: 815 FTTYSGVAAFMETLKESAAEKGFVETLMGR-RRYIRAINSRNQTQRAAAERIAINTPIQG 873

Query: 536 KAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            A    K   + +   +K+   +  L+L     L+     +    +    +Q
Sbjct: 874 SAADIVKTAMLHVDRALKRQHLSAHLLLQVHDELILEAPDSEVDSVKALLKQ 925


>gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 884

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 102/675 (15%), Positives = 194/675 (28%), Gaps = 161/675 (23%)

Query: 15  DLTKCGIC----KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70
           D+   G+      Y      +      +  P+  W               L + D     
Sbjct: 337 DIAGLGLYDGNKGYFLAFETLQ---SVNAEPIRQW---------------LSDADKEKWI 378

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKE 128
            + +  +  L     + +        ++LA     P  S L   G A K S   +   ++
Sbjct: 379 FDKHRAQLALS-WKGIKL--RGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQ 435

Query: 129 LIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQEL 185
           +  +  K     E L   N     E         K  +     +E++  L      E  L
Sbjct: 436 VFGKGAKFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQELYYEL------EHPL 489

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G  VD      L   +  +   +   +     G+  +    ++L   LF 
Sbjct: 490 AGVLAEMELAGIKVDKESLKQLGTEISDQLKTIMDRIYEQA-GMTFNINSPKQLGEVLFE 548

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           +  L ++  T+T         +KL P                        + +       
Sbjct: 549 KLQLPVQKKTKTGYSTDAEVLEKLAP----------------------YHDIVGD----- 581

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
             L +   ++           +  P   + H    Q I       +  P+   I      
Sbjct: 582 -ILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQYPNLQNIPIRLEE 640

Query: 361 SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   + S  G  ++ AD + IE RVLA ++G++   +AF    D++  T    F V
Sbjct: 641 GRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGV 700

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           + A+V  + R   K +   + Y        +     G+     +  +      E++    
Sbjct: 701 SEAEVDANMRRSAKAVNFGIVYGISDYGLSQ---NLGITRKEASRFI------EQYFSVF 751

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              R   ++    A    ++                                      ++
Sbjct: 752 RGVRNYMDSIIREAKTQGYV------------------------------------TTLL 775

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLT 598
            R+R                  LP   +  Y       R+ +NT                
Sbjct: 776 QRRRY-----------------LPEINASNYNLRSFAERTAMNTP--------------- 803

Query: 599 ENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651
              +Q  + DI+   M+         K    ++L VHDE++ E P+ +      L   +M
Sbjct: 804 ---IQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVM 860

Query: 652 TSNPSWAKGLPLKAE 666
               + A  +PLK E
Sbjct: 861 EQ--ALALDVPLKVE 873


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
           bacterium]
          Length = 894

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 101/619 (16%), Positives = 182/619 (29%), Gaps = 156/619 (25%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQ 121
             +  V  N  ++  VLK   +  + +       +LA     PS         A      
Sbjct: 381 PKLKKVGQNIKYDLIVLK---SEGVNLVGVAFDTMLASYILNPSGRRHNMNDMARDYLGY 437

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-- 179
              + KE++    K    E  +D+          L  EY   D  +T  +++ L PL   
Sbjct: 438 TTTKYKEVVGTASK----EIGFDK------VDIELATEYAAEDADITWRLYENLSPLLQG 487

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   +   G  +D +    L+Q++  +     +E+ SL  G   +
Sbjct: 488 DDFKLLQELELPLIEVLAEMELHGMKLDKSHLQKLSQLIQQKLEDQQKEIYSLA-GEEFN 546

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+        VL            V   R         
Sbjct: 547 INSPKQLSVILFEKLELPVIKKTKNGYSTDVSVLEQLAAEHELPDVVLTYRQL------- 599

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                    +                  R H   +Q +      
Sbjct: 600 ------------------------VKLKSTYADALQEDIFNNTGRVHTSFNQTVAATGRL 635

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +S+P+   I         +R   +A     L+ AD + +E RVLA ++ ++  + AF+ 
Sbjct: 636 SSSNPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADYSQVELRVLAHLSEDEALVDAFQM 695

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T    F   P ++  + R + K +   +                GL+    + 
Sbjct: 696 GEDIHTRTACEIFGTTPERLDAEARRMAKAVNFGIV--------------YGLSAFGLSK 741

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +K                      P+ A             KK   Q  +   ++   +
Sbjct: 742 QLKIY--------------------PKDA-------------KKFIDQYFALYKKVKVYM 768

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTT 583
            +   Q  E G  +    RR                 LP  +S          R  +N+ 
Sbjct: 769 VETVAQAKEVGYTLTLMNRRRY---------------LPDLKSQNRQVRESAERIAINSP 813

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP 637
                             VQ  + D++   M+         K    ++L VHDE+V E P
Sbjct: 814 ------------------VQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHDELVFECP 855

Query: 638 DTDE-----FNASMLYHLM 651
           + +E          +  +M
Sbjct: 856 EDEEQEMRALVTKEMEEVM 874


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 176/564 (31%), Gaps = 79/564 (14%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           W       +   L+    +  +T + HN  F+  +L A      P+       +LA +  
Sbjct: 394 WVPASSEAL-DALRPLFADNSITKIGHNLKFDLAILAAQ---SCPVDGPCYDTMLAHALI 449

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            P     L  + E             EL+    KG                  +   +Y 
Sbjct: 450 EPEQRHNLDTLAE--DYLRYSTIRFSELMPDAKKGSP--------LDYSSVDPQALADYA 499

Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT ++++  +P   +          E  L  +   +   G  +         +++
Sbjct: 500 TEDADVTLQLWECFKPKLEESGQASIFYEIETPLLPVLVAMESEGIRLCTETLEETGRVL 559

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSN 266
           + +   L   + +   G   +    ++L   LF E  L      T+T    T ++VLSS 
Sbjct: 560 EGQIATLKDAVYA-AAGREFNLNSPKQLGEVLFNELKLVDKPKKTKTGQFATNEQVLSSL 618

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
               P    +   R                                 S+         P 
Sbjct: 619 APKHPIVADLLEYRQL-------------------------------SKLKSTYIDALPN 647

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
              P   R H    Q+ T      ++DP+   I         +R   +  EG  L+ AD 
Sbjct: 648 AVDPVSGRVHTHYGQVQTATGRLSSNDPNLQNIPVRSAQGREIRKAFVPREGWTLLAADY 707

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +  ++  L AF  G D++  T A+ F V    V++DQR+  K++   + Y
Sbjct: 708 SQIELRILAALTADEGLLTAFREGRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPY 767

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              A    +   T  ++     +++    A               +   E A    ++ T
Sbjct: 768 GISAFGLAQRLGT--VSRTEAQNIIDNYFAQFP------GIPGYMQAQQESARAKGYVAT 819

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-IL 560
            C R ++  R  +S    +     +        G A    K   + + +   D      +
Sbjct: 820 VCGR-RRYLRDINSGNGTIRAAAERNAINMPIQGTAADMIKLAMIRVHHAIIDAGLKSRM 878

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTT 584
           +L     L++       S L    
Sbjct: 879 LLQVHDELIFDLAPGEESALRQLV 902


>gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
 gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
          Length = 909

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 121/692 (17%), Positives = 201/692 (29%), Gaps = 167/692 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64
           D     +  Y     ++  A              HD P  P+ L         +  LE++
Sbjct: 336 DTETTSLD-YM-QAEIVGVALAVATDRAAYIPLAHDYPGAPEQLDRDLVLTRLRPLLEDS 393

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSA-LKAVGEALKLSSQK 122
               V  N  ++  VL    N  I +      +++ +       +       ALK   +K
Sbjct: 394 QRAKVGQNLKYDANVLA---NYGIALRGIAHDSMLESYVLDATGSRHDMDTLALKYLGEK 450

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +E+  +  K  T              A      Y   D  VT ++ + L P    E
Sbjct: 451 TTHFEEVAGKGAKQITFN----------AVAIEQAAPYAAEDAAVTLKLHQTLWPKLESE 500

Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                        L  +   I   G  VD  L    +  +      L+Q    L  G   
Sbjct: 501 AYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELGERLAILEQSAHDLA-GQAF 559

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           +    ++L   LF +  L +   T      T + VL+      P    +   R       
Sbjct: 560 NLGSPKQLGEILFQKLELPVLKKTPKGAPSTAEDVLAELALDYPLPAVLMEYRSL----- 614

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                     S+         P    P   R H    Q +T   
Sbjct: 615 --------------------------SKLRSTYTDRLPDMIDPGTGRVHTSYHQAVTATG 648

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R    A EG+ +V AD + IE R++A ++ ++  L AF
Sbjct: 649 RLSSSDPNLQNIPIRTAEGRRIRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLLGAF 708

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
               D++  T A  F V    V+ DQR   K +   L Y   A     +A    L     
Sbjct: 709 GANLDVHSATAAEVFGVPLEDVSSDQRREAKAINFGLIYGMSAF---GLAKQLRLGR--- 762

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                         +A+ +     E +P   + D    T      +        V  L+ 
Sbjct: 763 -------------HEAQAYIDRYFERYP--GVADYMTQT------RELAHSQGYVETLF- 800

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                              +R  +P +  +  +               R +   R+ +N 
Sbjct: 801 ------------------GRRLYLPEINARNKQ---------------RQMAAERTAINA 827

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCET 636
                               Q  + DI+   M+   +          +++ VHDE+V E 
Sbjct: 828 PM------------------QGTAADIIKLAMIAVDEWLSKTDIDALMIMQVHDELVFEV 869

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
            DT+    +  +  LM    S    +PL  E 
Sbjct: 870 ADTEVATLTSAIPDLMADVAS--LDVPLLVEA 899


>gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
 gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
          Length = 917

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 113/703 (16%), Positives = 205/703 (29%), Gaps = 172/703 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEA 60
             L +D ET SP       +     +     F     ++         D  +    ++E 
Sbjct: 340 RVLSVDTETTSPNPAMAELVGISFSNQEKTGFYVSVKNNA----SLFQDKSLNLDEVREH 395

Query: 61  L---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           L    ++ V  V  N  ++  VL+   N    ++      +LA     P           
Sbjct: 396 LGPVLSSQVPKVGQNIKYDLIVLE---NHGFVLNNIQFDTMLASYVLRPEG--------- 443

Query: 118 LSSQKMEEGKELIARFCKGETHEC----LYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172
                M+   +L   F    T          + K    +       EY   D  VT  ++
Sbjct: 444 -RRHNMD---DLAKEFLNYNTITYEDLVGTGKKKKELTDIDPEQVAEYAAEDADVTFRLY 499

Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +              L   E  L  +   +   G  +DV     L +  D E   L+ E+
Sbjct: 500 QIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHLESEI 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279
                G   +    ++L+  LF    L +   T+T   T   VL       P   ++   
Sbjct: 560 HRQAGG-PFNIASTKELQKILFDNLKLRIVKKTQTGFSTDHEVLEELVGEHPIIEKLL-- 616

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         +   ++         P    P+  R H   
Sbjct: 617 -----------------------------DYRKYTKLKSTYVDALPKMVNPKTGRIHTSY 647

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMA 393
           +Q I       ++DP+   I         +R          +++  D + IE R++A ++
Sbjct: 648 NQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHIS 707

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L+A+  G D++  T A  + V    VT + R   KV+  ++ Y        +   
Sbjct: 708 KDPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTPYGLSRNLR 767

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                 ++A++F       +P                       
Sbjct: 768 I-------------------PRDEAKSFIERYMTQYP----------------------- 785

Query: 514 HSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                 + + +    E   +NG    +  +RR V  +                       
Sbjct: 786 -----GVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKS---------------AK 825

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY--DIVL 626
               R  +N+                   +Q  S D++   M+    +  K  Y   ++L
Sbjct: 826 EAAKRIAINSP------------------IQGTSADMIKIAMIKIHEDIEKKHYKSRMLL 867

Query: 627 TVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
            VHDE+V E    + D+F AS +   M +  S    LP+  EG
Sbjct: 868 QVHDELVFEVHKKEKDDFKAS-MKKHMETAMS--LDLPIVVEG 907


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 91/561 (16%), Positives = 165/561 (29%), Gaps = 94/561 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60
           D ET S   +             ++  +F  +          H  P MP  L        
Sbjct: 43  DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 92

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE+     +  +  ++  VL         I     TL+ +              AL
Sbjct: 93  LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 150

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    K  + +++  +  +                       EY   D  +T ++   L 
Sbjct: 151 RHLGVKTIKYEDVAGQGAQQIG----------FDEVPLAQAFEYAAEDADITLQLHHALY 200

Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  ++E  L             + + +   G  +D       +  +      L+QE  +L
Sbjct: 201 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 260

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    +++    F    L +         +T + VL    +  P    +  +R 
Sbjct: 261 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 318

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 319 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 348

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       ++DP+   I         +R   +A  G K+V AD + IE R++  ++ ++
Sbjct: 349 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMLHISEDE 408

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  GED++  T A  F V P +VT DQR I KV+   L Y   +     +AS  G
Sbjct: 409 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 465

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +        +     +    +    E    +   G           + +  
Sbjct: 466 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 518

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 519 NGPRRQAAERAAINAPMQGTA 539


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 95/644 (14%), Positives = 176/644 (27%), Gaps = 160/644 (24%)

Query: 46  DCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           D     +  +     L   LE+  +  +  N  ++  +      L I +     T++L+ 
Sbjct: 395 DLAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKI---FAQLGINVAPIDDTMLLSY 451

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNK---PNHREAWRLF 157
           +               L    M+   E            + L    K      +      
Sbjct: 452 AMHA-----------GLHGHGMDTLSE--RYLSHTPIPIKPLLGTGKSAITFDKVPLADA 498

Query: 158 GEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTL 207
            +Y   D  +T  +++  +P   +          E+ L  +   +   G  VD      +
Sbjct: 499 VKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVPVLAAMERSGVKVDRDTLSRM 558

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263
           +     +   L+ ++  L  G   +    ++L   LF E GL      +T    T   VL
Sbjct: 559 SNAFAQKMAGLEDDIYELA-GRKFNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVL 617

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                      +V + R                                 S+        
Sbjct: 618 EDLATEHDLPARVLDWRQL-------------------------------SKLKSTYTDA 646

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
                 P   R H              ++DP+   I         +R   +A  GK LV 
Sbjct: 647 LQDHINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKALVA 706

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
            D + IE R+LA +A      +AF+ G D++  T +  F V   ++T D R   K +   
Sbjct: 707 LDYSQIELRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFG 766

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y        +                          +A+ F     E  P        
Sbjct: 767 VIYGISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP-------- 799

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                          +T  N     A++   V  ++ +K     
Sbjct: 800 -----------------------------GIRTYMNDTKAFAKEHGFVQTLFGRK----- 825

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-- 616
            +  P   +   R     R+ +N                    +Q  + D++   M+   
Sbjct: 826 -IHTPEISAKGPRAGFAQRAAINAP------------------IQGTAADVIRRAMIRMP 866

Query: 617 --ATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
                    ++L VHDE++ E     E +      H+M +    
Sbjct: 867 DAIKDLPATMLLQVHDELLFEVEKGAEDDLIAAARHVMENAADP 910


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/559 (15%), Positives = 160/559 (28%), Gaps = 81/559 (14%)

Query: 46  DCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           D     +  +     L   LE+  +  +  N  ++  +      L I +     T++L+ 
Sbjct: 394 DLAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYDSKI---FAQLGITVAPIDDTMLLSY 450

Query: 102 SNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                         + +         K L+       T + +                 Y
Sbjct: 451 VMHAGLHGHGMDALSERYLGHTPIPIKPLLGSGKSAVTFDKV----------PLAQAVPY 500

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +++  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 501 AAEDADITLRLWQLFKPQLHRIQVTKVYETLERPLVPVLAAMERSGIKVDRDTLSRMSNA 560

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+  L  G   +    ++L   LF E GL      +T    T   VL   
Sbjct: 561 FAQKMAGLEDEIYELA-GRKFNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLEDL 619

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   ++ + R                                 S+           
Sbjct: 620 ATEHDLPGRILDWRQL-------------------------------SKLKSTYTDALQD 648

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
                  R H              ++DP+   I         +R   +A EGK LV  D 
Sbjct: 649 HINKDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGKVLVALDY 708

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +A      +AF+ G D++  T +  F V   ++T D R   K +   + Y
Sbjct: 709 SQIELRILAHIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAINFGVIY 768

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                    +A    +        +        + +     R   +N    A E  F+ T
Sbjct: 769 GISGF---GLARNLRIPRAEAQGFID------RYFERFPGIRTYMDNTKAFAKEHGFVQT 819

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              R K    +  ++         +A       G A    +R  + +    KD     ++
Sbjct: 820 LFGR-KINTPEIGAKGPRA-GFAQRAAINAPIQGTAADVIRRAMIRMPAAIKDIPA-TML 876

Query: 562 LPSGRSLVYRDVGNNRSYL 580
           L     L++         L
Sbjct: 877 LQVHDELLFEVEKGAEDAL 895


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/554 (17%), Positives = 169/554 (30%), Gaps = 74/554 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
           + L+  L +  V  + HN+ ++  VL    +  + I     T++++ S            
Sbjct: 441 EALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITPVDDTMLISYSMDAGRHGHGMDE 500

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            +L+    +     E+                  P  + A      Y   D  VT  +++
Sbjct: 501 LSLRHLGHRPIPFDEV----------TGTGRARIPFSQVALDKATAYAAEDADVTLRLWQ 550

Query: 174 RLEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L P    ++ L   +Q           +   G  VD A    + +        L+QE+ 
Sbjct: 551 ALRPRLRPDRSLALYEQVERRMVAVLRDMEMAGIKVDGAELARIGEDFSQRMVVLEQEIH 610

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278
            L  G   +    ++L   LF E  L      +     T   VL            +V +
Sbjct: 611 ELA-GKPFNVGSPKQLGEILFDEQKLPGGKRGKNGAWGTDASVLEDLAARGHELPRRVLH 669

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A                               +           Q   R  R H +
Sbjct: 670 WRQLA-------------------------------KLKSTYVEGLAAQIDRRDGRVHTD 698

Query: 339 LDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +T      +++P+   I         +R   +A  G  L+ AD + IE R+LA +A
Sbjct: 699 FSMAVTSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVAEPGHVLLAADYSQIELRLLAHLA 758

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                  AF  GED++  T A  F +AP +V K+ R   K +   + Y   A     +A+
Sbjct: 759 DVPSLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYGMSAF---GLAA 815

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+       ++        +         M E     A E  ++ +   R K      
Sbjct: 816 RLGIGPGEARGIIDA-----YFSQYPGILEEM-ERLKSEAREKGYVLSPFGR-KLWIDGI 868

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRD 572
            ++         +A       G A    KR  V +    +    +  ++L     L++  
Sbjct: 869 QAKEQARRGNAERAAINAPFQGGAAEIIKRAMVRMPAALRAAGLSARMLLQVHDELLFEV 928

Query: 573 VGNNRSYLNTTTRQ 586
                       RQ
Sbjct: 929 PEAEVDATAECVRQ 942


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/646 (15%), Positives = 191/646 (29%), Gaps = 141/646 (21%)

Query: 48  VHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                +P     +VLK  LE+  V  +  N  ++  VL       I +  +  T++++  
Sbjct: 388 AAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY---GIDVAPYDDTMLISYV 444

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKEL-IARFCKGETHECLYDRNK-PNHREAWRLFGEY 160
                          L    M+   EL +   C      C   +N+    +        Y
Sbjct: 445 MEA-----------GLHGHGMDALAELHLGHTCIPFKEICGTGKNQITFDKVPLDKATLY 493

Query: 161 CKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +++ L+P            + E+ +  +   +   G  VD    + L+  
Sbjct: 494 AAEDADITLRLWEILKPALVAKKMATVYETLERPMADVLSKMERVGIKVDPDQLNRLSS- 552

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
              ++    +       G   +    +++   LF E GL     T+T      ++     
Sbjct: 553 DFGQKMMAAEAEAHEAAGRDFNVASPKQIGEILFGEMGLPGGKKTKTGAWSTDAAVLDQL 612

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                     +                          L++   ++               
Sbjct: 613 AAEGHALPVAL--------------------------LEYRQFAKLKSTYSDSLFAHINR 646

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
              R H       T      +++P+   I         +R   IA  G  LV AD + +E
Sbjct: 647 DTKRVHTSFSLAATTTGRLSSTEPNLQNIPIRTEAGRQIREVFIAEPGHVLVAADYSQVE 706

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A  +   +AF  G D++  T +  F V    +    R   K +   + Y   A
Sbjct: 707 LRLLAHIANVESLKQAFRDGTDIHAMTASEVFGVPIEGMDPMVRRKAKAINFGVIYGISA 766

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +A+  G+  +                                             
Sbjct: 767 F---GLANQIGVKRDEA------------------------------------------- 780

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            K        +   +   + +   +  E G    I  +R   P +   +DKN      P+
Sbjct: 781 -KAFIDAYFEKFPGIRAYMDEMKAKAAETGYVETIFGRRAHFPGI---RDKN------PN 830

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
            R          R  +N   +         G   + I +A+ R    +  +NA      +
Sbjct: 831 MRMFA------ERQAINAPIQ---------GSAADVIRRAMIR---MDDALNAANLDAKM 872

Query: 625 VLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL--PLKAEG 667
           +L VHDE+V E P+    +   L   +M    S A  L  PL  + 
Sbjct: 873 LLQVHDELVFEVPENQAADLIALTAKVMGEACSPALELSVPLVVDA 918


>gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 883

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 105/621 (16%), Positives = 201/621 (32%), Gaps = 139/621 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV 112
           + +K  LE+ ++  + ++   E   L      DI +      L +A+    P   +    
Sbjct: 360 EKIKHILEDENIEKIGYDIKAEYLSL---LPYDISLRGIKYDLKIAKYLLSPDNNSYDIS 416

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTVTRE 170
             A++     ++  +E    F KG+  + +    K    E +    +      D+ V   
Sbjct: 417 EIAMEYGLSHLQSHEE---FFGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDI-VMTA 472

Query: 171 I--FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I   +  +     E  L  +   +   G  +D                +L+ E+  L  G
Sbjct: 473 IRDSEMTKLFEDVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESEIYELA-G 531

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF +  L     T+T       VL     +     ++ + R     
Sbjct: 532 EEFNINSPKQLGVILFEKLNLPPVKKTKTGYSTDAAVLEELSDMHDIIGKIISYRQYTKL 591

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L+  +N                              P   R H   +Q I  
Sbjct: 592 QSTY-VEGLLNIIN------------------------------PNTERIHSSFNQTIAA 620

Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +++P+   I     I   +R   IA +G  LV +D + IE RVLA ++ E+  ++
Sbjct: 621 TGRISSTEPNLQNIPVRLEIGRNLRKAFIARQGCVLVDSDYSQIELRVLAHISDEEALIQ 680

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF    D++  T +  F V  ++VTK+QR   K +   + Y         +++  G+   
Sbjct: 681 AFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVYGISDF---GLSNNLGITKK 737

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +KT    + +++ E + + +     EH                            
Sbjct: 738 KAGQYIKT--YLDRYKNIEKYMQDVVAFGEEHGYV------------------------- 770

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             I  +RR +P +   K KN +I  L              R  +
Sbjct: 771 ----------------TTILGRRRSIPQL---KQKNIMIKNL------------GKRLAM 799

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           NT                   +Q  + DI+   M+              ++L VHDE++ 
Sbjct: 800 NTP------------------IQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDELII 841

Query: 635 ET-PDTDEFNASMLYHLMTSN 654
           E   D  ++  ++L   M+  
Sbjct: 842 EATADEQDYIKALLQEEMSKA 862


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 47  PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 103

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 104 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 156

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 157 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 215

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 216 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 244

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 245 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 304

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 305 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 364

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 365 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 405

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 406 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 429

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 430 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 465

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 466 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 525

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 526 --VPLEVE 531


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 106/691 (15%), Positives = 227/691 (32%), Gaps = 168/691 (24%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALE 62
           D ET S + +             ++  A  +            D      + +  +  LE
Sbjct: 374 DTETTSLVAIE----------AELVGLALSYYAGEAYYVPFPADKAQTQAILEEFRGVLE 423

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKL 118
           + ++  +  N  ++ TVLK     +I I       +LA     P    ++ A+ E  L  
Sbjct: 424 SENIKKIGQNLKYDITVLKKY---NIEIKGECFDTMLASYLLDPDNRHSMDAMAEKYLNY 480

Query: 119 SSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           S  K++    LI +   K  T   + D          +   EY   D  +T ++ +   P
Sbjct: 481 SPVKIDT---LIGKKSTKNTTQGNMRD-------VEVQKVVEYAGEDADITLQLKEYFAP 530

Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             ++           E  L ++   I   G  +D       ++I+D +   L+Q + +L+
Sbjct: 531 KVAERPILEKLFKTVEMPLMHVLAHIEATGVRIDTQALAESSEILDKDIKILEQTIYTLS 590

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G V +    ++L   LF +  L +++  +T   +  +  + LT                
Sbjct: 591 -GEVFNIASPQQLGKVLFEKLNL-MKNPPKTKTGQYATGEEVLTKLTDNEI--------- 639

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                            ++  L+     +         P        R H   +Q +   
Sbjct: 640 -----------------VQQILEIRELQKLKSTYVDALPALVSKIDGRLHTSYNQAVVAT 682

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I         +R   I   +   ++ AD + IE R++A  + ++  ++
Sbjct: 683 GRLSSTNPNLQNIPIKTAKGREIRKAFIPTDDDFVILSADYSQIELRLIAAFSQDETMME 742

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T ++ + +   +VT D R + K    A+ Y   A       +   ++ +
Sbjct: 743 AFNNGTDIHTATASKIYKIDIQEVTADMRRMAKTANFAILYGSSAFNLS---AQLKISTS 799

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                       ++  ++  + S V + 
Sbjct: 800 EAK-----------------------------------------KLIDSYYGEFSAVKKF 818

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +E+ Q   Q  E  +  + R+R      Y+       ++   + R+             
Sbjct: 819 KDEMIQKARQ-FEYAETFLGRRR------YLAGINGGAMVSGQAERN------------- 858

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
                              + +Q  + D++   M++        K    ++L VHDE+V 
Sbjct: 859 ----------------AVNSPIQGTAADMIKLAMIDIHRFMMREKMQSKMILQVHDELVF 902

Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLK 664
           +   ++ +F    +  LM +    A  LP++
Sbjct: 903 DAHKSEIDFLKENVIKLMEN----ALLLPVR 929


>gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2]
 gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2]
          Length = 938

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/643 (14%), Positives = 182/643 (28%), Gaps = 157/643 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA-RSNGLPSALKAVGEA 115
           LK  L++  V  +  N  ++  +      LDI +     T++++   N           +
Sbjct: 411 LKPVLQDPAVIKIGQNMKYDAKIFAR---LDIDVAPIDDTMLMSYAMNAGKHNHGMDTLS 467

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +         K L+            +DR             +Y   D  +T  ++++ 
Sbjct: 468 ERYLGHTPIPIKPLLGSG----KSAITFDR------VPVDDAVKYAAEDADITLRLWQQF 517

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P            + E+ L  +   +   G  VD      ++     +   L+ E++ +
Sbjct: 518 KPQLHMNRVTTVYETMERPLVPVLAQMERHGIKVDRDTLSRMSNAFAQKMAGLEDEIQEM 577

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---------TTCQRVLSSNKKLTPQAIQV 276
             G   +    ++L   LF E GL + D  +         +T   VL     L     ++
Sbjct: 578 A-GRPFNVGSPKQLGEILFDEMGLEMPDGKKPSTGKTGAYSTGADVLEDLATLHDMPRRI 636

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + R                                 S+                  R H
Sbjct: 637 LDWRQL-------------------------------SKLKSTYTDALQEHINAETGRVH 665

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                   +     ++DP+   I         +R   +A +GK +V  D + IE R+LA 
Sbjct: 666 TSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEDGKVIVSLDYSQIELRILAH 725

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +AG     +AF  G D++  T +  F+V   ++T D R   K +   + Y        + 
Sbjct: 726 IAGIDALKQAFLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARN 785

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                                    +A+ F     E  P                    R
Sbjct: 786 LRI-------------------PRGEAQGFIDRYFERFP------------------GIR 808

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +              ++ QT+   K                       +  P   +    
Sbjct: 809 KYMDDTVAF--AKENSYVQTLFGRK-----------------------INTPEINAKGPH 843

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLT 627
                R+ +N                    +Q  + D++   M+    A       ++L 
Sbjct: 844 AGFAKRAAINAP------------------IQGTAADVIRRAMIRMPDAIAGLPAKMLLQ 885

Query: 628 VHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667
           VHDE++ E  +    +       +M +    A    + L  + 
Sbjct: 886 VHDELIFEVEEGAVDDLITAARDVMENASDPAVKLDVKLAVDA 928


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/548 (15%), Positives = 175/548 (31%), Gaps = 78/548 (14%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D      + +  +   EN  +  V  N  ++  VL+   N +I +   +   ++A     
Sbjct: 398 DKAATTKLLETFRPFFENEHIGKVGQNLKYDLKVLQ---NYNIEVRGALFDTMIAHYLLN 454

Query: 106 P-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           P         +    +      + LI +     +      R  P          EY   D
Sbjct: 455 PDMRHNMDILSETYLNYTPIAIESLIGKGKAQRS-----MRTVP-----LDQVKEYAVED 504

Query: 165 VTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             VT ++    +            +  E  L  +   +   G  +DV       + +D +
Sbjct: 505 ADVTWQLKNVFKEEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDAD 564

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKL 269
             +L+  +     G   +    ++L   LF +  +      T+T    T + VL+     
Sbjct: 565 IAQLEATIAEQA-GENFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASK 623

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                 +   R                                  +         P +  
Sbjct: 624 HKIVADILEWRQ-------------------------------VQKLKSTYVDALPLEVN 652

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAG 383
               R H    Q +       +++P+   I         VR   IA      L+ AD + 
Sbjct: 653 KLTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQ 712

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++ E   + +F   ED++ +T A+ F+V   +VT++QR+  K +   + Y  
Sbjct: 713 IELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGV 772

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A     +++ T L+ +    L+ T  A   + +  N+     +   EH   +  +G   
Sbjct: 773 SAF---GLSAQTNLSRSESKELIDTYYA--TYPNLRNYISKQIQFAQEHGYVETVLGR-- 825

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILML 562
              ++     HSR   +     +        G A    K   + + +    +     ++L
Sbjct: 826 ---RRYLPDIHSRNQVVRGAAERNAVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLL 882

Query: 563 PSGRSLVY 570
                LV+
Sbjct: 883 QVHDELVF 890



 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 21/146 (14%)

Query: 529 EQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
           ++ I+   A     R  +   +   ++   +  +L  GR     D+ +     N   R  
Sbjct: 789 KELIDTYYATYPNLRNYISKQIQFAQEHGYVETVL--GRRRYLPDIHS----RNQVVRGA 842

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDE 641
                         +Q  + DI+   M+              ++L VHDE+V + P T+ 
Sbjct: 843 AERNA-----VNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTEL 897

Query: 642 FNAS-MLYHLMTSNPSWAKGLPLKAE 666
                ++   M S  + A  +PL A+
Sbjct: 898 NTVKPLIKEAMESAFTLA--VPLVAD 921


>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
 gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
          Length = 941

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/638 (15%), Positives = 179/638 (28%), Gaps = 150/638 (23%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           +LK  LE+  +  +  N  ++  + K    +D+        +  A + GL         +
Sbjct: 418 ILKPMLEDDSILKIGQNMKYDAKIFKRV-GIDVDPIDDTMLMSYAMNAGL-HRHGMDVLS 475

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +         K L+      +T            R        Y   D  +T  +++  
Sbjct: 476 EQYLGHTPIPIKPLLGAGKSAKTFN----------RVPVEDAVRYAAEDADITLRLWEVF 525

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P   +          E+ L  +   +   G  VD      ++     +   L+ EL  L
Sbjct: 526 KPQLHRKQVTSVYETMERPLVPVLAKMEMHGIKVDRDTLSRMSNAFAQKMAGLEDELYEL 585

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +     ++   LF + GL      +     T   VL           +V + R 
Sbjct: 586 AGG-KFNVGSPAQVGEILFDQMGLEGGKKGKNGKYATGADVLEDLATEHDLPGRVLDWRQ 644

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                           S+                  R H     
Sbjct: 645 L-------------------------------SKLKSTYTDALQTHINAETGRVHTSYSI 673

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
              +     ++DP+   I         +R   IA EGK LV  D + IE R+LA +A   
Sbjct: 674 TGANTGRLSSTDPNLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHVANID 733

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF  G D++  T +  FNV   ++T D R   K +   + Y        +      
Sbjct: 734 ALKQAFRDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRI-- 791

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                               +A+ F     E  P   I      T        + ++H+R
Sbjct: 792 -----------------PRAEAQGFIDRYFERFP--GIRTYMDDTVA------FAKEHNR 826

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V  L+                                      +  P   +         
Sbjct: 827 VETLFGR-----------------------------------KIHTPEINAKGPGAGFAK 851

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEI 632
           R+ +N                    +Q  + D++   M+    A       ++L VHDE+
Sbjct: 852 RAAINAP------------------IQGTAADVIRRAMIRMDDAIAHLPAKMLLQVHDEL 893

Query: 633 VCETP-DTDEFNASMLYHLM--TSNPSWAKGLPLKAEG 667
           V E   D  E   +    +M   +NP     +PL  + 
Sbjct: 894 VFEVDKDAAEDLIAAARDVMENAANPVVKFDVPLVVDA 931


>gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 878

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/661 (15%), Positives = 205/661 (31%), Gaps = 141/661 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F +D     + D  +    P+++K  LEN +   V +++  +  V+   
Sbjct: 330 YLKD-DILKFGF-YDKERYIVVDADNIKDYPELIKW-LENENSKKVVYDAK-KTFVIAHR 385

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            N++I     +   +LA     P   +  V     +++      KE ++ + KG+     
Sbjct: 386 LNINI--QNIVFDAMLASYIFDPSRTIDDVYSV--VTNYHQTYVKEDVSIYGKGKKRHVP 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                  H  +     +  K  +    E  +++  L   E  L  +   + + G   DV 
Sbjct: 442 DTEILNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVN 501

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261
               + Q +  +   L Q +     G   +    ++L   LF    L +   T+T     
Sbjct: 502 DLQHMQQELQEKLELLVQRIHD-AAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTA 560

Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +   P    +   R  A                               +    
Sbjct: 561 VDVLEQLQNEHPIINDILEYRQLA-------------------------------KLQST 589

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EG 373
                    +    R H   +Q +       + DP+   I         +R     S E 
Sbjct: 590 YVEGLQK-VISNDKRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPSSED 648

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             ++ AD + IE RVLA +  +    +AF  G+D++  T  + F V   +VT   R   K
Sbjct: 649 SVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAK 708

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y        +   +  +        +       ++  +    +    +  + A
Sbjct: 709 AVNFGIVYGISDYGLSQ---SLNITRKEAKIFID------DYLASFPGVKQYMSDIVKDA 759

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             + ++ T                                        +RR +P +  + 
Sbjct: 760 KANGYVETLL-------------------------------------HRRRYIPDITSRN 782

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                     + R          R+ +NT                   +Q  + DI+   
Sbjct: 783 F---------NLRGFA------ERTAMNTP------------------IQGSAADIIKLA 809

Query: 614 MMNATKA------GYDIVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           M+   K          ++L VHDE++ E P  + +EF+   +  +M         +PLK 
Sbjct: 810 MVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSL-FVEDIMEHALD--LDVPLKV 866

Query: 666 E 666
           +
Sbjct: 867 D 867


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 44  PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 100

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 101 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 153

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 154 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 212

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 213 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 241

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 242 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 301

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 302 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 361

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 362 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 402

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 403 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 426

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 427 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 462

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 463 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 522

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 523 --VPLEVE 528


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
           From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 43  PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 99

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 100 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 152

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 153 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 211

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 212 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 240

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 241 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 300

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 301 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 360

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 361 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 401

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 402 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 425

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 426 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 461

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 462 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 521

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 522 --VPLEVE 527


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
           Polymerase I From Thermus Aquaticus
          Length = 538

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 42  PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 98

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 99  R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 151

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 152 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 210

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 211 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 239

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 240 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 299

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 300 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 359

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 360 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 400

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 401 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 424

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 425 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 460

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 461 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 520

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 521 --VPLEVE 526


>gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
 gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
          Length = 878

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/661 (15%), Positives = 205/661 (31%), Gaps = 141/661 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F +D     + D  +    P+++K  LEN +   V +++  +  V+   
Sbjct: 330 YLKD-DILKFGF-YDKERYIVVDADNIKDYPELIKW-LENENSKKVVYDAK-KTFVIAHR 385

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            N++I     +   +LA     P   +  V     +++      KE ++ + KG+     
Sbjct: 386 LNINI--QNIVFDAMLASYIIDPSRTIDDVYSV--VTNYHQTYVKEDVSIYGKGKKRHVP 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                  H  +     +  K  +    E  +++  L   E  L  +   + + G   DV 
Sbjct: 442 DTEILNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVN 501

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261
               + Q +  +   L Q +     G   +    ++L   LF    L +   T+T     
Sbjct: 502 DLQHMQQELQEKLELLVQRIHD-AAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTA 560

Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +   P    +   R  A                               +    
Sbjct: 561 VDVLEQLQNEHPIINDILEYRQLA-------------------------------KLQST 589

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EG 373
                    +    R H   +Q +       + DP+   I         +R     S E 
Sbjct: 590 YVEGLQK-VISNDKRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPSSED 648

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             ++ AD + IE RVLA +  +    +AF  G+D++  T  + F V   +VT   R   K
Sbjct: 649 SVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAK 708

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y        +   +  +        +       ++  +    +    +  + A
Sbjct: 709 AVNFGIVYGISDYGLSQ---SLNITRKEAKIFID------DYLASFPGVKQYMSDIVKDA 759

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             + ++ T                                        +RR +P +  + 
Sbjct: 760 KANGYVETLL-------------------------------------HRRRYIPDITSRN 782

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                     + R          R+ +NT                   +Q  + DI+   
Sbjct: 783 F---------NLRGFA------ERTAMNTP------------------IQGSAADIIKLA 809

Query: 614 MMNATKA------GYDIVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           M+   K          ++L VHDE++ E P  + +EF+   +  +M         +PLK 
Sbjct: 810 MVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSL-FVEDIMEHALD--LDVPLKV 866

Query: 666 E 666
           +
Sbjct: 867 D 867


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
           Large Fragment Of Dna Polymerase I From Thermus
           Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
           Wi Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
           Pol In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidies
          Length = 540

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 44  PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 100

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 101 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 153

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 154 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 212

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 213 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 241

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 242 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 301

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 302 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 361

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 362 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 402

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 403 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 426

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 427 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 462

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 463 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 522

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 523 --VPLEVE 528


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/653 (13%), Positives = 173/653 (26%), Gaps = 155/653 (23%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D + +  MP     ++LK  LE+  +  +  N  ++  +         PI   +      
Sbjct: 395 DALAEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARYGVDVAPIDDTMLMSY-- 452

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
             +           + +         K L+       T + +                 Y
Sbjct: 453 AMHAGEHGHGMDTLSERYLGHTPIPIKPLLGSGKSAITFDKV----------PIDEATAY 502

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++K  +P   +          E+ L  +   +   G  VD  +   ++  
Sbjct: 503 AAEDADITLRLWKLFKPQLHRVQVTTVYETLERPLVPVLAQMEMHGIKVDRDVLSRMSNA 562

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
              +   L+ E+  L  G   +     +L   LF + GL      +    +T   VL   
Sbjct: 563 FAQKMAALEAEIHELA-GETFNVGSPAQLGEILFEKMGLEGGKKGKTGKYSTGADVLEDL 621

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   +V + R                                 S+           
Sbjct: 622 ATEHELPRKVLDWRQL-------------------------------SKLKSTYTDALQT 650

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
              P   R H        +     ++DP+   I         +R   +A  G  LV  D 
Sbjct: 651 HINPDTGRVHTSYAITGANTGRLASTDPNLQNIPVRTEEGRRIREAFVAEPGNVLVSLDY 710

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +A      +AF  G D++  T +  F+V   ++T + R   K +   + Y
Sbjct: 711 SQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAINFGVIY 770

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                   +                          +A+ F     E  P           
Sbjct: 771 GISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP----------- 800

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
               +++                             I   K          +      + 
Sbjct: 801 ---GIRRYMDD------------------------TIAFAKEHGYVQTLFGRK-----IH 828

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617
            P   +         R+ +N                    +Q  + D++   M+      
Sbjct: 829 TPEINAKGPHAGFARRAAINAP------------------IQGTAADVIRRAMVRMPEAI 870

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667
                 ++L VHDE++ E  +        +   +M + P  A    + L  + 
Sbjct: 871 DGLPAKMLLQVHDELLFEVAEDAVDQTIEIARDVMENAPDPAVKLDVKLTVDA 923


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 202/635 (31%), Gaps = 135/635 (21%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
                  P  L   L N ++T  AHN+ +   ++    +    I       +L+      
Sbjct: 378 MFVSEGHPG-LIALLTNKNITKTAHNAKY---LMNLLASAGQEIQGLDFDTMLSAHLLGE 433

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             L       +    ++ + + +     +    +           +    +    KG   
Sbjct: 434 KNLGIKDLVFEHFGVEIADVENI---LTQNGKKKSFSASELSEAAQLVADYTFRLKGLFA 490

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                 K ++   + E  L  +   +   G  +D  L   + + V  +  KL++ + +  
Sbjct: 491 AQLAETKLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA 550

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF E  L +   T+T       VL   K        +   RM  
Sbjct: 551 -GHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRML- 608

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                          +         P    P   R H   +Q  
Sbjct: 609 ------------------------------VKLKSTYLDTLPRMVNPHTRRLHTSFNQTR 638

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +S+P+   I         +R   IA +G  ++  D + I+ RVLA ++G+   
Sbjct: 639 TATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPAL 698

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF   +D++  T AR  N+ P++VTK+QR + K +   + Y   +   ++    T L+
Sbjct: 699 IEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQ---ATELS 755

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L                                            ++  KA+ +K+ RV+
Sbjct: 756 LAEA-----------------------------------------DKFIKAYFEKYPRVA 774

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             + E+              +  +RR +P +                             
Sbjct: 775 IYFAEIKHQART--NGYVETLLGRRRYIPEI----------------------------- 803

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
             N+  R + RE           VQ  S DI+   M+         K    ++L VHDE+
Sbjct: 804 --NSPNR-ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDEL 859

Query: 633 VCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666
           + E PD +    +++L   M+   +    +PLK E
Sbjct: 860 IFEVPDAELKRMSALLMETMSGAVT--FEIPLKVE 892


>gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
 gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
          Length = 988

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/687 (14%), Positives = 198/687 (28%), Gaps = 172/687 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVL---- 57
           ID ET S           Y     ++  +F    H        H    D ++ + L    
Sbjct: 396 IDTETTSV----------YWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLDRDT 445

Query: 58  -----KEALENTDVTIVAHNSYFERTVLKAC-----FNLDIPIHRWICTLVLARSNGLPS 107
                K  LEN ++  +  +  ++  +L         N+    + W    +LA      +
Sbjct: 446 VLARLKPILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 505

Query: 108 --ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                    A      +    +++  +  K  + + +          A  +  +Y   D 
Sbjct: 506 ITRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQV----------AIDIASDYACEDA 555

Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            +T ++F                L   E     +   +   G  +     + L++  D E
Sbjct: 556 DITYQLFDLFSKKLADDTNNAKLLHELEIPTAEILCQMEANGILIRRPFLNELSKRFDEE 615

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L++    +  G   +    ++L   LF + G+     T+T      S+ + +  +  
Sbjct: 616 IIALEKRAYEVA-GEEFNLGSPKQLGEMLFDKLGVVGGKKTKTGQ---YSTGEAVLSKID 671

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                                        +  TL++ G S+               +  R
Sbjct: 672 HPL--------------------------VDITLEYRGLSKLKSTYTDALDNVADAKTDR 705

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H    Q +T      ++DP+   I         +R   IA EG+ ++ AD + IE R++
Sbjct: 706 VHTSYHQALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELRLM 765

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A  +G++    AF  G D++  T A       A+VT  +R   K +   L Y   A    
Sbjct: 766 AHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVAEVTATERRNAKAINFGLLYGMSAF--- 822

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +A    ++ +     +                           ++D  I T        
Sbjct: 823 GLAKQLQMSRSEAQDYIDMY------------------FERYPGVKDYMINTRA------ 858

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                       +     + +TI   K           +V                    
Sbjct: 859 ------------SAYEHGYIETILGRKLYTPDINHSNRMV-------------------- 886

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIV 625
               G  R+ +N                     Q  + D++   M+   K        ++
Sbjct: 887 --KQGAERAAINAPL------------------QGSAADLIKLAMIAVDKVLPKEQAKML 926

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMT 652
           L VHDE+V E           +  L+T
Sbjct: 927 LQVHDELVFEVDAD---KVDEISQLIT 950


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 337 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 393

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 394 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 446

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 447 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 505

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 506 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 534

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 535 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 594

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 595 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 654

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 655 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 695

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 696 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 719

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 720 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 755

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 756 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 815

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 816 --VPLEVE 821


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/637 (17%), Positives = 206/637 (32%), Gaps = 139/637 (21%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
                  P  L   L N ++T  AHN+ +   ++    +    I       +L+      
Sbjct: 378 MFVSEGHPG-LIALLTNKNITKTAHNAKY---LMNLLASAGQEIQGLDFDTMLSAHLLGE 433

Query: 107 SALKAVGEALKLSSQKMEEGKE-LIARFCKGE-THECLYDRNKPNHREAWRLFGEYCKGD 164
             L       +    ++ + +  L     K   +   L +  +      +RL G +    
Sbjct: 434 KNLGIKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQL 493

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             +       ++   + E  L  +   +   G  +D  L   + + V  +  KL++ + +
Sbjct: 494 AEI-----NLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYA 548

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281
              G   +    ++L   LF E  L +   T+T       VL   K        +   RM
Sbjct: 549 QA-GHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRM 607

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                            +         P    P   R H   +Q
Sbjct: 608 L-------------------------------VKLKSTYLDTLPRMVNPHTRRLHTSFNQ 636

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      +S+P+   I         +R   IA +G  ++  D + I+ RVLA ++G+ 
Sbjct: 637 TRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDP 696

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF   +D++  T AR  N+ P++VTK+QR + K +   + Y   +   ++    T 
Sbjct: 697 ALIEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQ---ATE 753

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+L                                            ++  KA+ +K+ R
Sbjct: 754 LSLAEA-----------------------------------------DKFIKAYFEKYPR 772

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V+  + E+              +  +RR +P +                           
Sbjct: 773 VAIYFAEIKHQART--NGYVETLLGRRRYIPEI--------------------------- 803

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
               N+  R + RE           VQ  S DI+   M+         K    ++L VHD
Sbjct: 804 ----NSPNR-ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHD 857

Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666
           E++ E PD +    +++L   M+   +    +PLK E
Sbjct: 858 ELIFEVPDAEFKRMSALLMETMSGAVT--FEIPLKVE 892


>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
 gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
          Length = 927

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 114/699 (16%), Positives = 202/699 (28%), Gaps = 172/699 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------ 57
             D ET S   +             ++  +F  +          H  P  P  L      
Sbjct: 353 SFDTETTSLDPMR----------ARIVGVSFATEPGRAAYVPLAHRGPDHPVQLPRDEVL 402

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              K  LE+     V  +  ++  VL +       I     TL+ +              
Sbjct: 403 ARLKPWLESPAHKKVGQHLKYDAQVLASHGITLAGIE--HDTLLESYVLESHRPHDMDNL 460

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  + +++  +       +  +D        +  +  EY   D  +T  + + 
Sbjct: 461 ATRHLGVKTIKYEDVAGKGA----AQIGFD------EVSVDVATEYSAEDADITLRLHQV 510

Query: 175 LEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P    E+ L Y+            Q I   G  +D       +  + +   +L  E  
Sbjct: 511 LYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQSNELGIRMLELQAEAY 570

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F +  L +         +T + VL    +  P    +   
Sbjct: 571 ALAGG-EFNLNSPKQIGEIFFQQLQLPVVKKTPSGAPSTDEDVLQKLAEDYPLPKVLL-- 627

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         +   ++         P    P   R H   
Sbjct: 628 -----------------------------DYRALTKLKSTYTDKLPKMINPDTGRVHTNY 658

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IA  G  +V AD + IE R++A ++G
Sbjct: 659 AQAVAVTGRLASNDPNLQNIPVRTPEGRRIREAFIAPPGSSIVSADYSQIELRIMAHISG 718

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AFE GED++  T +  F V   +VT +QR I KV+   L               
Sbjct: 719 DASLMAAFEHGEDVHRATASEIFGVTRQEVTSEQRRIAKVINFGLI-----YGMSAFGLA 773

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           + L                                          G A +  K    +  
Sbjct: 774 SNL------------------------------------------GIARDAAKLYIDRYF 791

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +R   +   + +   +    G       RR               L LP           
Sbjct: 792 ARYPGVARYMDETRMEAKSCGFVQTVFGRR---------------LWLP----------- 825

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
              +  N   RQ               +Q  + D++   M+         +    +++ V
Sbjct: 826 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMITVQDWIERARVKSRLIMQV 879

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E PD + E   + +  LM S       +PL AE
Sbjct: 880 HDELVLEVPDDELEIIRAKVPELMCSVAQ--LNVPLVAE 916


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 191/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L    GL     ++ A+ E L L          L+A        T E +  
Sbjct: 44  PEPYKALRDLKEERGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 100

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 101 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 153

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 154 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 212

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 213 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 241

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 242 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 301

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 302 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 361

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 362 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 402

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 403 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 426

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 427 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 462

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 463 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 522

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 523 --VPLEVE 528


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/665 (14%), Positives = 195/665 (29%), Gaps = 174/665 (26%)

Query: 30  VILFAFGFDDHP---VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
           ++   F  +      +++ D      +   +KE LE+ ++  + H+   E   ++  +  
Sbjct: 346 ILAITFSVNGEKLYYIDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHE---IRHFYVH 402

Query: 87  DIPIHRWICTLVLARSNGLPS----ALKAV----------------GEALKLSSQKMEEG 126
           DI +       ++      P+    ALK +                G+   L S      
Sbjct: 403 DIEMKNVTFDTMIGEYLIDPAKSSYALKDLAAQYIGQEVMSEEELRGKGKNLISIGEAPK 462

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
           ++L+   C+  +           + E            +    +  +  +     E  L 
Sbjct: 463 EDLMKYLCQRVSVIGKI------YPE------------IKAKMQELELEKLYYEVELPLV 504

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +   +  +G  VD ++   L      +   L + +  L      +    ++L   LF +
Sbjct: 505 EVLAAMEYKGIKVDRSMLEILEIEFGEQIDLLTKAIHELA-ETNFNINSPKQLGEVLFEK 563

Query: 247 TGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
             L     T+T       VL   +       ++   R                       
Sbjct: 564 LELPPIKKTKTGYSTNAEVLEKLQDQHDIIPKILEYRQ---------------------- 601

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
                     ++              P   R H   +Q +T      +++P+   I    
Sbjct: 602 ---------VTKLKSTYVDGLLNIINPETGRIHSNFNQTVTTTGRISSTEPNLQNIPIKL 652

Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   +A+E  + + AD + +E RVLA +  ++  L AF   +D++  T A  F+
Sbjct: 653 EMGRRLRKVFVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFD 712

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V   +VT   R+  K +   + Y        +  + T +                     
Sbjct: 713 VPMEEVTDSMRSSAKAVNFGIVYGISDYGLSQNLNITRVKA------------------- 753

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                       KK       +   +   + +  EQ  + G  +
Sbjct: 754 ----------------------------KKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVV 785

Query: 539 IARKRRDVPLVYMKKDKNNLILMLP--SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
               RR                 LP    R+   R  G  R  +NT              
Sbjct: 786 TLFNRRRY---------------LPELKSRNFNIRSFGE-RMAMNTP------------- 816

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYH 649
                +Q  + DI+   M+N  +          ++L VHDE++ E PD + E    ++  
Sbjct: 817 -----IQGSAADIIKIAMVNVYRRLKEQGLTSKLILQVHDELIVEAPDNEVEVAIKIVRE 871

Query: 650 LMTSN 654
            M   
Sbjct: 872 SMEEA 876


>gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
           polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
           Orientation For The Structure-Specific Nuclease Domain
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 336 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 392

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 393 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 445

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 446 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 504

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 505 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 533

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 534 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 593

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 594 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 653

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 654 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 694

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 695 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 718

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 719 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 754

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 755 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 814

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 815 --VPLEVE 820


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 333 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 389

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 390 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 442

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 443 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 501

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 502 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 530

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 531 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 590

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 591 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 650

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 651 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 691

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 692 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 715

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 716 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 751

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 752 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 811

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 812 --VPLEVE 817


>gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
 gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
          Length = 1027

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 105/640 (16%), Positives = 195/640 (30%), Gaps = 148/640 (23%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
              LK  LE+  +  V     F   +L       + +       +++ +         L A
Sbjct: 499  DALKPVLESAGIAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSHGLDA 555

Query: 112  VGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E+ L  +   + E          G     +        +        Y      V+  
Sbjct: 556  LSESNLGHTLHTLTELT--------GTGKNKIG-----LDQVGIDRATAYAAERADVSLR 602

Query: 171  IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + + L+P              E+ L  +   +  RG  +D  +   L+        +++ 
Sbjct: 603  LARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEA 662

Query: 221  ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQ 275
            E+  L  G   +    ++L   LF + GL     T+T    T  +VL    +       +
Sbjct: 663  EIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPKK 721

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            +   R                                 S+         P    P+  R 
Sbjct: 722  ILEWRQ-------------------------------VSKLRSTYTDALPNYVHPQTHRV 750

Query: 336  HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
            H       T      +++P+   I         +R   +A+ G KLV AD + IE R+L+
Sbjct: 751  HTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHKLVSADYSQIELRLLS 810

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
             +A      KAF+ G D++  T +  F V    +  + R   K +   + Y   A     
Sbjct: 811  EVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAF---G 867

Query: 451  MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            +A+  G+        +K       +E       +M E                    + +
Sbjct: 868  LANQLGIPREEAGAYIK-----RYFERFPGIRAYMDET-------------------RDF 903

Query: 511  RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             + H  V+ L+                    ++   P +             PS R+   
Sbjct: 904  CRAHGYVTTLF-------------------GRKCHYPDIKASN---------PSIRAFNE 935

Query: 571  RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
            R   N R                 G   + I +A+ R    E  +   K    ++L VHD
Sbjct: 936  RAAINARL---------------QGSAADIIRRAMVR---MEDALAEKKLSAQMLLQVHD 977

Query: 631  EIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            E++ E P+ + E    ++  +M   P  A    +PL+ + 
Sbjct: 978  ELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDA 1017


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 120/664 (18%), Positives = 201/664 (30%), Gaps = 151/664 (22%)

Query: 6   IDFETRSPIDLTK--CGICKYAEDVCVILFAFGFD-DHPVELWDCVHDPVMPQVLKEAL- 61
           +D ET S   L     G+    ED      A+     H  E  + V   +    L E L 
Sbjct: 317 VDTETDSLDPLKARLVGVSLCTEDGE----AWYLPCGHRDEAGELVAGQLPLDRLIEFLR 372

Query: 62  ---ENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              E+   T + HN  F+  VL A       L  P+H  +    L   +     L  +  
Sbjct: 373 PVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTMIGAWLLAPDRRTYKLDDLCG 432

Query: 115 ALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            + L     EE          FC+                        Y   DV     +
Sbjct: 433 EINLRMTSYEEVTHADKSEDAFCRVP----------------LEAAKNYSCEDVYGALRL 476

Query: 172 FK----------RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++           L  L   E  L  +   +   G  VD      L+   D  R + D+ 
Sbjct: 477 YQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDR-RLRTDEL 535

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
                 G+  +    ++L   LF +  L     T+T     +   + L+           
Sbjct: 536 SIYQAAGMSFNINSPKQLGEVLFEKLQLPKGRKTKTGWSTDVKVLENLSFDHELPAL--- 592

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                     LQ+   ++              PR  R H   +Q
Sbjct: 593 -------------------------ILQYRNLAKLKSTYVDKLASLRNPRTGRVHTSFNQ 627

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      +S P+   I         +RS  IA++G  L+ AD + I+ RVLA  + ++
Sbjct: 628 CGTATGRLSSSSPNLQNIPIRTEEGRRIRSAFIAADGCLLLAADYSQIDLRVLAHYSQDR 687

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF+ G+D++  T A  FNV+P  VT + R + K +   + Y   +     ++S   
Sbjct: 688 ELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVYGMSSF---GLSSQLH 744

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +    A        +  +    +  + A +D F+ T   R ++   + +S 
Sbjct: 745 VSRKDAQLFIDRYFAH------FSGIKDFMASTIQQAKKDGFVTTLLGR-RRPLAEINSA 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +    T   G A                     + ML   R L+ RD    
Sbjct: 798 NRVQREFAERTAINTPIQGTAA----------------DIIKLAMLRIHRELLRRDFR-- 839

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                        +R +L                 +HDE+V E 
Sbjct: 840 -----------------------------ARMLL----------------QIHDELVLEV 854

Query: 637 PDTD 640
           P+T+
Sbjct: 855 PETE 858


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/592 (16%), Positives = 188/592 (31%), Gaps = 94/592 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEAL 61
           D ET S   L        AE V +  F +          P +  +      + +  +   
Sbjct: 365 DTETTSVNALE-------AELVGIS-FCWSAHKGYYVPFPTDKVEAT---KLLETFRPFF 413

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120
           EN  +  V  N  ++  VL+   N +I +   +   ++A     P         +    +
Sbjct: 414 ENERIGKVGQNLKYDLKVLQ---NYNIEVRGALFDTMIAHYLLNPDMRHNMDILSETYLN 470

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
                 + LI +     +      R  P          EY   D  VT ++    +    
Sbjct: 471 YTPIAIESLIGKGKAQRS-----MRTVP-----LDQVKEYAVEDADVTWQLKNVFKEEMP 520

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                   +  E  L  +   +   G  +DV       + +D +  +L+  +     G  
Sbjct: 521 KVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQA-GES 579

Query: 231 SSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
            +    ++L   LF +  +      T+T    T + VL+           +   R     
Sbjct: 580 FNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILEWRQ---- 635

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                        +         P +      R H    Q +  
Sbjct: 636 ---------------------------VQKLKSTYVDALPLEVNKLTGRVHTTYMQTVAA 668

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                +++P+   I         VR   IA      L+ AD + IE R++A ++ E   +
Sbjct: 669 TGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMI 728

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +F   ED++ +T A+ F+V   +VT++QR+  K +   + Y   A     +++ T L+ 
Sbjct: 729 DSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAF---GLSAQTNLSR 785

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +    L+ T  A   + +  N+     +   EH   +  +G      ++     HSR   
Sbjct: 786 SESKELIDTYYA--TYPNLRNYISKQIQFAQEHGYVETVLGR-----RRYLPDIHSRNQV 838

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
           +     +        G A    K   + + +    +     ++L     LV+
Sbjct: 839 VRGAAERNAVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVF 890



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 21/146 (14%)

Query: 529 EQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
           ++ I+   A     R  +   +   ++   +  +L  GR     D+ +     N   R  
Sbjct: 789 KELIDTYYATYPNLRNYISKQIQFAQEHGYVETVL--GRRRYLPDIHS----RNQVVRGA 842

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD- 640
                         +Q  + DI+   M+              ++L VHDE+V + P T+ 
Sbjct: 843 AERNA-----VNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTEL 897

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666
                ++   M S  + A  +PL A+
Sbjct: 898 NIVKPLIKEAMESAFNLA--VPLVAD 921


>gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268]
 gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268]
          Length = 938

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 109/677 (16%), Positives = 200/677 (29%), Gaps = 162/677 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKE 59
            ID ET    D     I   ++   ++ F+F F++         H        +     +
Sbjct: 370 SIDAETLVSFDTETTSID--SKSAKIVGFSFAFNEERAYYVPLAHSYLGAPAQISSDAAK 427

Query: 60  ALENT--DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           A  ++     +V  N  ++  ++K  FN++ P  R+  T+VLA      +A+     + +
Sbjct: 428 AAIDSLFRGYVVGQNLKYDFEIVKNNFNIE-PPARFADTMVLAWLLDPANAVGMDSISPR 486

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               +     +++              + +            Y   D  VT  ++ +L+ 
Sbjct: 487 YLGYETVHFGDVVK-------------KGETFASVELDAATIYASEDAWVTLRLYFKLKG 533

Query: 178 LSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           L   E  L+ L Q +              G  +DV +   L    +     L  E+  L 
Sbjct: 534 LL--EPALFKLAQELEFPFVRVLWQMQRCGIKIDVEMIKRLIGRNEKSLRALTDEIYELC 591

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283
            G   +     +L   LF   GL     T+T     + VL     L P   ++ + R   
Sbjct: 592 -GEQFNINSPAQLGAVLFERLGLPAAKRTKTGYSTDESVLKDLTALHPAVGKILDYRELF 650

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
              +      L  A+                            QN     R      Q  
Sbjct: 651 KLQSTYCEPLLQLALAD-------------------------AQN-----RVRSNFLQTG 680

Query: 344 THLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   I +       VR C +A  G  L+  D + IE R+LA  + +   
Sbjct: 681 TATGRLASKNPNLQNIPARGTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPAL 740

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF   ED++  T    F           R I K +   L Y  GA    K++ + G+ 
Sbjct: 741 LAAFRADEDIHARTAISIFG----DAQPAHRTIAKSINFGLIYGMGAG---KLSDSLGIA 793

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  ++                                               S + 
Sbjct: 794 RAEAKGYIERYF-----------------------------------------AAFSTIK 812

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E    +    +        +  R+                       R   + +  NN  
Sbjct: 813 EFLQSIKSDAK-ADGYVSTLFGRR-----------------------RYFDFANARNNMV 848

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIVCE 635
           Y            +Y  +      Q  + DI+ + M++ +        ++L +HDE++ E
Sbjct: 849 Y-----------ASYEREAVNTKFQGSAADIIKKAMVDISPLLNGEARLILQIHDELIFE 897

Query: 636 T-PDTDEFNASMLYHLM 651
              D  +   +    +M
Sbjct: 898 VRDDLAQGFGARAQEIM 914


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/636 (15%), Positives = 192/636 (30%), Gaps = 160/636 (25%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           A+  D  P           + ++LK   E+ ++    HN      +L       I + + 
Sbjct: 365 AYSLDGPP---------DKILEILKTICEDGNIKKYCHNGKETIRLLHR---NGITLRQL 412

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
               ++A     P++         L    +E    ++             DR  P    A
Sbjct: 413 AFDTMIAAYLLNPAS-----SNQDLEDISLEHLNAVL----------PGEDRKLP----A 453

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                      +    +++ +       E  L  +   +   G  VD      +++ +  
Sbjct: 454 QAHCIMELAQLLDNKLKLYGQDRLFYEIEIPLAGILAEMEIEGVAVDKKQLEAMSEELGR 513

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLT 270
           +  KL  E+  LT G   +    ++L   LF +  L +   T+T       VL       
Sbjct: 514 QIEKLADEIYRLT-GREFNINSPKQLGKVLFEDLKLPVIKKTKTGYSTDADVLEELAAAH 572

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
               ++   R  A                               +              P
Sbjct: 573 EAVAKILEYRQMA-------------------------------KLKSTYADGLAALINP 601

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384
              + H    Q +T+     +SDP+   I         +R   I    +  L+ AD + I
Sbjct: 602 ETGKLHTTFHQTVTNTGRLSSSDPNLQNIPIRLEAGRLIRKVFIPGRPENLLLTADYSQI 661

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++G+   +KAF+ GED++  T A  F V P +VT++ R   K +   + Y   
Sbjct: 662 ELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVYGLS 721

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                 +A    ++       ++                                     
Sbjct: 722 DF---GLARDIKVSRQEARRYIE------------------------------------- 741

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLP 563
                     +R + + + + +   +  + G    +  +RR +P ++             
Sbjct: 742 -------NYFARYAGVKDYIERIIREARQKGYVTTLLNRRRYLPDLFSPNR--------- 785

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
           + RS         R+ +NT                   +Q  + DI+   M+N  +   +
Sbjct: 786 TIRSF------GERTAMNTP------------------IQGSAADIIKLAMVNIHRELAE 821

Query: 624 ------IVLTVHDEIVCETPDTDEFNASMLYH-LMT 652
                 ++L VHDE++ + P  +      L    M 
Sbjct: 822 HGLKAKMILQVHDELIFDAPAVEIDQLKDLVKRCME 857


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 94/528 (17%), Positives = 175/528 (33%), Gaps = 90/528 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----Q 55
           +D ET S  ++             ++  +   +          H        +P     Q
Sbjct: 375 LDTETTSLDEMR----------AEIVGISLSVEPGAAAYIPLRHAGPDAPEQLPADEVLQ 424

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            LK  LE+     +  +  ++R V     N  I +H +   T++ +    +         
Sbjct: 425 RLKPWLEDAARPKLGQHVKYDRHV---FANAGIEVHGYVHDTMLQSYVLEVHRPHGLASL 481

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+ +++     ++L    C    H+       P  +        Y   D   T ++ + 
Sbjct: 482 ALRHTNRTGISYEDL----CGKGAHQI------PFAQVPVDKAAAYACEDADQTLDVHRV 531

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L P              E         I   G  +D A     +  +     +L+QE   
Sbjct: 532 LWPQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSNDLGQRIVQLEQEAYD 591

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +  G   +    ++L    F + G+ +   T T    T + VL    +  P   ++  +R
Sbjct: 592 IA-GQPFNLASPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 650

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                     +L  L  + T + +        LPR  R H    
Sbjct: 651 --------------------------SLSKLKGTYTDKLAQLA-----LPRTGRVHTHYA 679

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       ++DP+   I         VR   IA+ G  +  AD + IE R++A ++G+
Sbjct: 680 QAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAAPGHVIASADYSQIELRIMAHLSGD 739

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF  G D++  T +  FNV   QV+ +QR   KV+   L Y   +     +A   
Sbjct: 740 ESLLRAFHEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIYGMSSF---GLAKNL 796

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
           G+     A  +      + +   + +     E   +H   +   G   
Sbjct: 797 GIETKAAAAYID--RYFQRYPGVKRYMDETVEFARDHGYVETVFGRRL 842


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 336 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 392

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 393 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 445

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 446 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 504

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 505 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 533

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 534 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 593

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 594 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 653

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 654 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 694

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 695 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 718

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 719 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 754

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 755 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 814

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 815 --VPLEVE 820


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 197/658 (29%), Gaps = 161/658 (24%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            ++   + F D  V  +    +  +   LKE LE+  +  +  N+      L       I
Sbjct: 345 EIL---YAFQDESVYSY-KTENNKIADALKEILESETIEKLFINAKESSLAL---LCAGI 397

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL---IARFCKGETHECLYDR 145
            +       +LA     PS+         L   +    +EL   +  F + +       +
Sbjct: 398 EVKNISFEPLLAYYLLQPSS--------SLPDLEEIFSRELDIGMQEFSQDQILAVETIK 449

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                    +   +    D+    E+             L  +   +   G  +D     
Sbjct: 450 LFKLRDILIKKLKDDSLYDLFKNMEL------------PLIKVLAQMEYNGVKIDKDWLQ 497

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262
            L+  ++     + ++   L  G   +    ++L   LF + GL +   T+T       V
Sbjct: 498 QLSDKLEKRLEIITKKAHELA-GEDFNLNSPKQLGEILFEKLGLPVIKRTKTGYSTNANV 556

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   +   P    +   R  A                               +       
Sbjct: 557 LEKLEGKHPIIPLISEYRELA-------------------------------KLKSTYID 585

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKL 376
             PP       + H   +Q++T      +++P+   I         +R   I S +   L
Sbjct: 586 SLPPLINSETGKIHTSFNQMVTATGRLSSTNPNLQNIPIRTEEGREIRKAFIPSSDNMIL 645

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE RV A ++G++   +AF +G D++  T +  F V   QV+ + R   KV+ 
Sbjct: 646 LAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVIN 705

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y   A    +      + +      +                              
Sbjct: 706 FGLAYGMSAYGLSQ---DLDIPVEEAQDYID----------------------------- 733

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                          +   R S +   + +  ++  E G A     R+            
Sbjct: 734 ---------------KYFERFSGVKKYMDETIQKVKEKGYAETLYGRKRY---------- 768

Query: 557 NLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                +P   S  Y       RS +NT                   VQ  + DI+ + M+
Sbjct: 769 -----IPEINSSNYHRRSFAERSAINTP------------------VQGTAADIMKKSML 805

Query: 616 NATKAGYDI------VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           +   +  DI      +L VHDE+V E  + D E  A ++   M +       +PL  +
Sbjct: 806 DVYDSLKDIDLEINILLQVHDELVFEVANKDLEKAALLIKDKMEAAAE--LDVPLLVD 861


>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255]
 gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
          Length = 932

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/643 (14%), Positives = 185/643 (28%), Gaps = 154/643 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVG 113
           ++L+  L++  +  +  N  ++  +       D+ +     T++L+ + NG         
Sbjct: 407 EILRPVLQDPSIIKIGQNVKYDTKIFARY---DVNLAPVDDTMLLSYAINGGKHNHGMDY 463

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            + +  + K    K L+       T + +          +      Y   D  +T  ++K
Sbjct: 464 LSERYLNHKPISIKTLLGSGKSAITFDKV----------SINDAVNYAAEDADITLRLWK 513

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             +P+  +          E+ L  +   +   G  VD      ++       + L+ E+ 
Sbjct: 514 LFKPMLHESSVTKIYETLERPLIPVLAKMEMNGIKVDRNTLSRMSNNFAQSMSGLEAEIY 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278
           +L  G   +    ++L   LF +  L      +T    T   VL           ++V +
Sbjct: 574 NLA-GQTFNVGSPKQLGEILFDKLELPGGKKGKTGAYGTGVDVLEDLASEGHELPVKVLD 632

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+              P   R H  
Sbjct: 633 WRQ-------------------------------MSKLKSTYTDALQGHINPNTGRVHTS 661

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                       ++DP+   I         +R   IA EG  L+  D + IE R+LA +A
Sbjct: 662 YVISGASTGRLSSTDPNLQNIPIRSEAGRKIREAFIAEEGNVLLSLDYSQIELRILAHIA 721

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +AF  G+D++  T ++ FNV    +    R   K +   + Y        +   
Sbjct: 722 KIDTLKQAFHEGQDIHALTASQMFNVPLENMDPMVRRQAKAINFGVIYGISGFGLAR--- 778

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                           +     ++A++F     E  P                    R  
Sbjct: 779 ----------------NLRIPRKEAQSFIDTYFERFP------------------GIRTY 804

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                         + +T+   K   +      P     K                    
Sbjct: 805 MDETVSF--AKENGYVETLFGRKIHTSEINAKGPQAGFAK-------------------- 842

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVH 629
              R+ +N                    +Q  + D++   M+      +     ++L VH
Sbjct: 843 ---RAAINAP------------------IQGTAADVIRRAMVQMPNAISHLPAKMLLQVH 881

Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWA--KGLPLKAE-GY 668
           DE++ E   D       ++ ++M           +PL  + G+
Sbjct: 882 DELIFEVNKDALNETTEVVRNIMEKASEPVVKLDVPLVVDAGF 924


>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
 gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
          Length = 917

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 111/653 (16%), Positives = 200/653 (30%), Gaps = 147/653 (22%)

Query: 41  PVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-I 94
           PV          +P+      LK  LEN     V  +  ++  VL    N DI ++    
Sbjct: 374 PVAHRGPDAPEQLPRDEVLAKLKPWLENPARKKVGQHLKYDAQVLA---NYDIALNGVEH 430

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            TL+ +              AL+    K  + +++  +  +                 A 
Sbjct: 431 DTLLESYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAQQ----------IGFDEVAL 480

Query: 155 RLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVAL 203
            +   Y   D  +T ++ + + P            +  E  + ++ + +   G  +D   
Sbjct: 481 DVAAAYAAEDADITLQLHRVMYPQVEREAGLKRVYTEIELPVSFVLRKMERTGVLIDSGR 540

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTC 259
               ++ + V   +L++E  +L  G   +    +++    F +  L +         +T 
Sbjct: 541 LEAQSREIAVRLVELEREAYALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           + VL    +  P    +  +R                               G S+    
Sbjct: 600 EEVLQKLAEDYPLPKLLLEHR-------------------------------GLSKLKST 628

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374
                P        R H    Q +       ++DP+   I         +R   IA+ G 
Sbjct: 629 YTDKLPRMINASTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIAAPGC 688

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           K+V AD + IE R++A ++G++  L+AF  GED++  T A  F V P +V+ DQR I KV
Sbjct: 689 KIVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEVFGVTPLEVSTDQRRIAKV 748

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   L Y   A     +AS  G+  +     +    A   +    N+    + +      
Sbjct: 749 INFGLIYGMSAF---GLASNLGITRDAAKLYIDRYFAR--YPGVANYMETTRASAKAQGY 803

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +   G           + +           +A       G A    K   + +      
Sbjct: 804 VETVFGRRL-----WLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAV------ 852

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
              L                                                RD L   M
Sbjct: 853 DGWLE-----------------------------------------------RDGLRSRM 865

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           +          + VHDE+V E PD +       L  +M+        +PL AE
Sbjct: 866 I----------MQVHDELVLEVPDAELALVREKLPEMMSGVAK--LKVPLVAE 906


>gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 893

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 111/663 (16%), Positives = 207/663 (31%), Gaps = 141/663 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           +  F   +  V  +      ++  + LK  +EN  +     N   +  + K    L + +
Sbjct: 347 MIGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQLVLFKR---LGLAL 403

Query: 91  HRWICTLVLARSNGLPSALKAVGEALK------LSSQKMEEGKELIARFCKGETHECLYD 144
                  +L        A   V   L       L+  +   GK   A+F        L  
Sbjct: 404 KGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKG--AKFAVPTDTNLLLS 461

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
            +  +  +      +          +  ++    +  E  L ++   +  +G  V+    
Sbjct: 462 -HIAHKADGLFKLEKPA----FTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYL 516

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
               +    ER    Q    +  G   +    ++L   LF + GL +   T+T     + 
Sbjct: 517 RNKGK-DLYERIADIQSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVD 575

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             +KL PQA  V                               LQ+   ++         
Sbjct: 576 VLEKLAPQAPIVD----------------------------HILQYRQLAKLKSTYIDGL 607

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVV 378
                P+ S+ H    Q +T      + DP+   I         +R+  + S    ++  
Sbjct: 608 LSVIYPKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFG 667

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMEL 437
           AD + IE RVLA + G++   KAF  GED++  T    F +A   V    +R   K +  
Sbjct: 668 ADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNF 727

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y         +A+  G++       + T      +++      WM       A E  
Sbjct: 728 GIVYGISDY---GLANNLGISRAEAKRFIDT-----YFQEFPQIHEWM-NTIKTFAHEHG 778

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
           ++ T                                     IA +RR +P +  K     
Sbjct: 779 YVET-------------------------------------IAHRRRYLPDIQAKNF--- 798

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                 + RS         R+ +N+                   +Q  + DI+   M+  
Sbjct: 799 ------NLRSFA------ERTAMNSP------------------IQGSAADIIKIAMIKV 828

Query: 618 TKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670
            +A         ++L VHDE++ ETP  +    + +   +M S    A  +PLK + +  
Sbjct: 829 NEALRKNNLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHG 886

Query: 671 KRY 673
             +
Sbjct: 887 DTW 889


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/659 (15%), Positives = 183/659 (27%), Gaps = 156/659 (23%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D      MP     ++LK  LE+  +  +  N  ++  +         PI   +  +  A
Sbjct: 396 DLAEG-QMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQVGITVAPIDDTML-MSYA 453

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
              GL         + +         K L+       T + +                 Y
Sbjct: 454 MHGGL-HGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKV----------PLNDAVPY 502

Query: 161 CKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  ++++ +P            + E+ +  +   +   G  VD      ++  
Sbjct: 503 AAEDADVTLRLWQQFKPALHRAQVTRVYETLERPMVAVLADMERAGIKVDRDTLSRMSNA 562

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+ +L  G   +    ++L   LF E GL      +T    T   VL   
Sbjct: 563 FSQKMAALEDEIYTL-VGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDL 621

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   ++ + R                                 S+           
Sbjct: 622 ATEHELPRRILDWRQL-------------------------------SKLKSTYTDALQD 650

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
              P   R H              ++DP+   I         +R   +A EGK LV  D 
Sbjct: 651 HINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGKTLVALDY 710

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +A       AF+ G+D++  T +  F+V   ++T + R   K +   + Y
Sbjct: 711 SQIELRILAHIADIPALKAAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                   +                          +A+ F     E  P   I      T
Sbjct: 771 GISGFGLARNLRI-------------------PRSEAQGFIDRYFERFP--GIRTYMDDT 809

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                 KA+ ++H  V  L+                                        
Sbjct: 810 ------KAFAKEHGYVETLF---------------------------------------- 823

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
              GR +   ++G          R                +Q  + D++   M+    A 
Sbjct: 824 ---GRRIHTPNIGAKGPQAGFAAR----------AAINAPIQGTAADVIRRAMIRMPAAI 870

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673
                 ++L VHDE++ E     +         +M S         + L  +  E   +
Sbjct: 871 VDLPAKMLLQVHDELLFEVDQGSQGALIDAARSVMESAADPVVHLDVKLTVDAGEGPNW 929


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 104/643 (16%), Positives = 200/643 (31%), Gaps = 157/643 (24%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-- 108
            ++ Q L+   E+ +      N  ++ ++ +A     I +       +LA     P A  
Sbjct: 408 ELVKQSLQPLWEDPNRPKSLQNCKYDLSIFRAH---GIRLQGIQFDPMLASYVLDPEASH 464

Query: 109 --LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD-- 164
                    L L +                 +++ L  + +           EYC  D  
Sbjct: 465 NLADLAATHLNLPT----------------TSYKKLLGKEQSIADIPISKVAEYCGTDAY 508

Query: 165 -----VTVTREIFKRLEPLS-----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                V +  E  ++ +P         E  L  + + +   G  VD       +Q ++ E
Sbjct: 509 CAYRLVPILTEKLQKTDPRLWDLFIQVELPLAQVLEEMEWIGIRVDTEFLRQFSQELEQE 568

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKL 269
              L+Q+  +   G   +    ++L + LF +  L +    +T     T   VL   +  
Sbjct: 569 LQSLEQKAYAQA-GETFNLNSPKQLGSLLFEKLKLDIRKTRKTATGYSTDASVLEKLEGD 627

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P                                +   +Q+   ++         P    
Sbjct: 628 HPL-------------------------------IETIVQYRTLAKLKSTYVDALPALVR 656

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384
               R H + +Q +T      +S+P+   I      S  +R   I  EG  L  AD + I
Sbjct: 657 SDTGRVHTDFNQTVTATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQEGWLLTAADYSQI 716

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++ E   L+ F +GED++  T      +   ++T ++R + K +   + Y  G
Sbjct: 717 ELRILAHLSQEPALLEGFRSGEDVHTLTARLL--LEKQEITSEERRLAKTINYGVIYGMG 774

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A   Q+ A T G++L+     ++  +  E +     + R  +    +H   +  +G    
Sbjct: 775 A---QRFARTAGVSLSEAKQFLQRFN--ERYAGIFAYLRSTEAFVEKHGYVETILGR--- 826

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                 R+    +S                                              
Sbjct: 827 ------RRYFPNLS---------------------------------------------- 834

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
            R   +R     R+ +N   +         G  ++ I  A+ R                +
Sbjct: 835 -RLTGHRKQAELRAAVNAPIQ---------GSASDIIKVAMVRLRQK-----LQNFRSRL 879

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           +L VHDE+V E   ++      L    M         +PL  +
Sbjct: 880 LLQVHDELVFEVDPSEWQALKPLIQREMEGAVP--LSIPLVVD 920


>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
 gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
          Length = 943

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 105/565 (18%), Positives = 187/565 (33%), Gaps = 82/565 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GL-PSALKAVG 113
           LK+ LEN  V  +AHN+ ++  VL    N  I +     T+ L+     GL    L  + 
Sbjct: 414 LKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCLSYVLEGGLHGHGLDELA 473

Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              L  ++ K EE        C     +                   Y   D  VT  + 
Sbjct: 474 TLHLGHTNIKFEEV-------CGKGKTQIG------FAEAPIDKACAYAAEDADVTFRLH 520

Query: 173 KRLEP--LSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             L+P  +  +        E+ L  +   +   G  VD  +   ++         L+ E+
Sbjct: 521 ALLKPRLVPERMTTVYETLERALIPVLVGMERNGIKVDPTILRDMSADFAKRLVTLEGEI 580

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
                G   +    ++L   LF + GL      +T    T   VL +         +   
Sbjct: 581 HEQA-GEPFNVGSPKQLGEILFDKMGLAGGKKGKTGAYGTGADVLETLAAEGSDFARKVL 639

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +  + ++      + LVE +N++                                R H  
Sbjct: 640 DWRQIAKLKSTYTDALVETINAE------------------------------TGRVHTS 669

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              +        ++DP+   I         +R+  +A  G  L+  D + IE R++A +A
Sbjct: 670 YSMVGAATGRLSSNDPNLQNIPIRTEEGRKIRTAFVAEPGNVLLSVDYSQIELRLVADIA 729

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G +   KAF  G D++  T +  F V  +++T D R   K +   + Y        +   
Sbjct: 730 GIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINFGIIYGISGFGLARQ-- 787

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L+ +        N+  E +    ++   M+    EH   +   G       +A R K
Sbjct: 788 ---LSTSQAEAQAYINAYFERFPGIRDYMTEMKTFAREHGFVETKFGRKVH--IQAIRDK 842

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRD 572
           +  +        +A       G A    KR  V L V + K ++   ++L     L++  
Sbjct: 843 NPAMRNF---GERAAINAPIQGTAADVIKRAMVRLPVALDKAQSKARMLLQVHDELLFEV 899

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKL 597
             ++       T  L RE   G   
Sbjct: 900 PEDDVEA----TSALVREVMEGAAA 920


>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
 gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
          Length = 913

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 114/649 (17%), Positives = 199/649 (30%), Gaps = 144/649 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D PV+      D V+   LK  LE+ +   V  +  ++  VL         +     TL+
Sbjct: 377 DAPVQ---LPRDEVL-AKLKPWLESAEHKKVGQHLKYDEQVLANYGIEMRGVE--HDTLL 430

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            +              AL+    K  + +++  +  +                 A     
Sbjct: 431 QSYVLESHRPHDMDNLALRHLGIKTIKYEDVAGKGAQQ----------IGFDEVALDKAA 480

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207
           EY   D  +T  + + L P  + E+ L ++ + I              G  +D       
Sbjct: 481 EYAAEDADITLRLHQTLYPQLAAEETLEHVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQ 540

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263
           +  +     +L+ E   L  G   +    +++    F    L +         +T + VL
Sbjct: 541 SSEIATRLIQLESEAYVLAGG-EFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVL 599

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               +  P    +  +R                               G S+        
Sbjct: 600 QKLAEDYPLPKILLEHR-------------------------------GLSKLKSTYTDK 628

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
            P        R H    Q +       ++DP+   I         +R   IA  G KLV 
Sbjct: 629 LPRMVNANTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  L+AF  GED++  T A  F+V P +V+ DQR + KV+   
Sbjct: 689 ADYSQIELRIMAHISGDESLLRAFSEGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFG 748

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y   +     +AS  G+  +     +        +       R+M E     A    +
Sbjct: 749 LIYGMSSF---GLASNLGITRDAAKLYID-----RYFARYPGVARYMDETRL-SAKAKGY 799

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
           + T   R +    + +           +A       G A    K   +            
Sbjct: 800 VETVFGR-RLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMI------------ 846

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                                     ++   E   G ++   I+Q               
Sbjct: 847 ------------------------AVQKWIEESNIGTRM---IMQ--------------- 864

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                    VHDE++ E PD +  +    L  LM      A  +PL AE
Sbjct: 865 ---------VHDELILEVPDEELSDVRKRLPELMCGVA--ALKVPLVAE 902


>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
 gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
          Length = 936

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 100/648 (15%), Positives = 183/648 (28%), Gaps = 167/648 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSALK 110
           LK  LE+  +  +  N  ++  +  A   + +        +  A   GL        + +
Sbjct: 409 LKPVLEDASILKIGQNMKYDAKIF-ALLGIAVAPIDDTMLMSYAMHAGLHNHGMDTLSER 467

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +G         +  GK  I                    R       +Y   D  VT  
Sbjct: 468 YLGHIPIPIKPLLGSGKSAI-----------------TFDRVPVDDAVKYAAEDADVTLR 510

Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +++  +P   +          E+ L  +   +   G  VD      ++     +   L+ 
Sbjct: 511 LWQMFKPQLHQSRVTTVYETLERPLVPVLAQMEMHGIKVDRDTLSRMSNAFAQKMAGLED 570

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTET----TCQRVLSSNKKLTP 271
           E++ +  G   +    ++L   LF E GL + D       +T    T   VL     +  
Sbjct: 571 EIQKMA-GRPFNVGSPKQLGEILFDELGLAMPDGKLPAKGKTGAYSTGADVLEDLATIHD 629

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R  A                               +              P 
Sbjct: 630 LPRRILDWRQLA-------------------------------KLKSTYTDALQDHINPD 658

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H              ++DP+   I         +R   +A+ G  +V  D + IE 
Sbjct: 659 TGRVHTSYSIAGAITGRLASTDPNLQNIPVRSDEGRRIREAFVAAPGNVIVSLDYSQIEL 718

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +AG     +AF  G D++  T +  F+V   Q+T D R   K +   + Y     
Sbjct: 719 RILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAINFGVIYGISGF 778

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +                          DA+ F     E  P                
Sbjct: 779 GLARNLRI-------------------PRSDAQGFIDRYFERFP---------------- 803

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
               RQ                           AR R  V  ++ ++      +  P   
Sbjct: 804 --GIRQYMDDTVAF-------------------ARDRGYVQTLFGRR------INTPEIN 836

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622
           +   +     R+ +N                    +Q  + D++   M+   KA      
Sbjct: 837 TKGPQAGFAKRAAINAP------------------IQGTAADVIRRAMIRMPKAIAGLPA 878

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA--KGLPLKAEG 667
            ++L VHDE++ E   T   +   +   +M +    A    + L  + 
Sbjct: 879 KMLLQVHDELLFEVDATAADDLIGIARQVMETASDPAVKLDVKLSVDA 926


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 106/635 (16%), Positives = 201/635 (31%), Gaps = 135/635 (21%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
                  P  L   L N ++T  AHN+ +   ++    +    I       +L+      
Sbjct: 378 MFVSEGHPG-LIALLTNKNITKTAHNAKY---LMNLLASAGQEIQGLDFDTMLSAHLLGE 433

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             L       +    ++ + + +     +    +           +    +    KG   
Sbjct: 434 KNLGIKDLVFEHFGVEIADVENI---LTQNGKKKSFSASELSEAAQLVADYTFRLKGLFA 490

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                   ++   + E  L  +   +   G  +D  L   + + V  +  KL++ + +  
Sbjct: 491 AQLAETNLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA 550

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF E  L +   T+T       VL   K        +   RM  
Sbjct: 551 -GHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRML- 608

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                          +         P    P   R H   +Q  
Sbjct: 609 ------------------------------VKLKSTYLDTLPRMVNPHTRRLHTSFNQTR 638

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +S+P+   I         +R   IA +G  ++  D + I+ RVLA ++G+   
Sbjct: 639 TATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPAL 698

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF   +D++  T AR  N+ P++VTK+QR + K +   + Y   +   ++    T L+
Sbjct: 699 IEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQ---ATELS 755

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L                                            ++  KA+ +K+ RV+
Sbjct: 756 LAEA-----------------------------------------DKFIKAYFEKYPRVA 774

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             + E+              +  +RR +P +                             
Sbjct: 775 IYFAEIKHQART--NGYVETLLGRRRYIPEI----------------------------- 803

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
             N+  R + RE           VQ  S DI+   M+         K    ++L VHDE+
Sbjct: 804 --NSPNR-ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDEL 859

Query: 633 VCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666
           + E PD +    +++L   M+   +    +PLK E
Sbjct: 860 IFEVPDAELKRMSALLMETMSGAVT--FEIPLKVE 892


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 121/689 (17%), Positives = 215/689 (31%), Gaps = 151/689 (21%)

Query: 7   DFETRS--PIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           D ET S  P D T  G+    E+     +  A  +   PV+      D V    L     
Sbjct: 361 DTETTSLHPEDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQ---LAKDDVF-AKLAPVFA 416

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  + HN  F+  VL     L      +  T+++A       +      A K  S K
Sbjct: 417 DPKIKKIGHNVKFDLLVLY-FAGLSAVKGVYADTMLMAHLLDSVQSCALDNLAEKYLSYK 475

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177
             +  ++     K  T + +             +   Y   D  V   +F  L P     
Sbjct: 476 TIKYSDVAGSGSKSVTFDNVPV----------DIACAYSGEDSEVALRLFNVLLPKIKDE 525

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                 L + E     +   +   G  V     +   +++  E   + +++ +   G   
Sbjct: 526 GKANDILFNLEMPCLSVLFDMERVGALVSADELYRQTEVLKSELQAVQKDIYA-AAGQEF 584

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L   LF    +      +                     N +   +   + ++
Sbjct: 585 NIASPKQLGNVLFESLAIPYPKKVKVDKNG----------------NKQYSTAEDVLTEI 628

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             + +  N   R R   + +G            P     R  R H   +Q  T      +
Sbjct: 629 APMYDIANLVLRFRSVSKLIG------TYTEKLPLLISKRTGRIHTSFNQAGTTTGRLSS 682

Query: 352 SDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I +       +R   IA +G  LV AD + IE R++A +A +   +KAF+ G 
Sbjct: 683 SDPNLQNIPARTHEGKLIRKAFIAPQGYTLVSADYSQIELRLIAHIAKDPNLIKAFKLGY 742

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A        +VT ++R+  K     L Y  GA     +++ TGL+        
Sbjct: 743 DIHKATAAEVLGKDINEVTGEERSRAKATNFGLMYGMGA---HGLSAQTGLSFKA----- 794

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                      A+ +       +P+                   R     + +  +    
Sbjct: 795 -----------AKAYIDCYFTRYPK------------------IRDYMDSIKKFAH--EH 823

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-GNNRSYLNTTTR 585
            + +TI   +                       +  P   S     V G  R+ +N    
Sbjct: 824 GYVETILGRR-----------------------IDFPGINSTNRIAVTGAERAAINAPM- 859

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPD 638
                            Q  + DI+   M+   K           ++L VHDE+V E  +
Sbjct: 860 -----------------QGSAADIIKIAMIAIEKWITSLPADTVRMILQVHDELVFEVKN 902

Query: 639 T--DEFNASMLYHLMTSNPSWAKGLPLKA 665
              DE  A  +  LM +  +    +PL A
Sbjct: 903 EFLDEATAK-IKELMENAVT--LDVPLLA 928


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 92/547 (16%), Positives = 166/547 (30%), Gaps = 77/547 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++L+  LEN  +     N  ++  VLK   N  + +       +LA     P        
Sbjct: 414 ELLRPLLENPAIAKTGQNLKYDLLVLK---NYGLELSPISFDTMLASYLLNPE------T 464

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              L        K    R  K +                 R   +Y   D  +   +   
Sbjct: 465 THNLDDLAARHLK---LRTTKYDELTGTGKTKLHIDDVEPRKLTDYACQDADIALRLTAI 521

Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L+   ++E  L ++ +            +  +G  +D       ++ V  +  +L + + 
Sbjct: 522 LQKELAEEPNLRHIGETLEFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQLKETIH 581

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNR 280
           S   G   +    ++L   LF   GL  +  T+T       VL     L P    +   R
Sbjct: 582 S-AAGESFNIDSPKQLSRILFEVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVGNLLEYR 640

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                             +         P    PR  R H   +
Sbjct: 641 SL-------------------------------QKIKTTYIDALPKMLNPRTGRVHTSFN 669

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAG 394
           Q IT      +S+P+   I     +   +R   I       L+ AD + IE R+ A ++G
Sbjct: 670 QHITATGRLSSSNPNLQNIPIRTPLGREIRKAFIPTDPRNLLLSADYSQIELRIAAEISG 729

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   ++AF   ED++  T    F+     +T D R   K +   + Y         ++  
Sbjct: 730 DGKLIEAFRNREDIHSATARVIFDTP--DITPDMRRKAKEVNFGVLYGIQPF---GLSKR 784

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +  +  A ++ T +A               +       E  F+ T   R ++      
Sbjct: 785 LNIPRSEAADIISTYTAKYP------GLFEALDTIKTTGREKGFVTTLLGR-RRYLPNLS 837

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDV 573
           SR   L     +A   T   G A    K   +      K+ +    ++L     LV+   
Sbjct: 838 SRNGNLQKAAERAAMNTPIQGTAADIIKCAMILCSKRMKEHDMQSSMLLQVHDELVFETT 897

Query: 574 GNNRSYL 580
              +  L
Sbjct: 898 PEEQENL 904


>gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
 gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 107/634 (16%), Positives = 194/634 (30%), Gaps = 143/634 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            + +AL   D+  V H +     + K   +  I          LA     P+      E 
Sbjct: 376 QVLQALFAPDIQKVVHGAK---ELEKELMDQGIEPQGIRFDTELAAYLLSPTDGSYDLEK 432

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKR 174
           L ++    +E  +       G         ++         F  +C   +    E + +R
Sbjct: 433 LGITYY-NQEFAKAKEYLTPGAFDSLFSLDSEGQSAGPMGAFLSHCAL-IDALYETLSQR 490

Query: 175 LEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           LE L         E  L  +   +   G  VD        + +     K    +  L  G
Sbjct: 491 LEELKLTQLYGEIELPLCPVLAEMERSGVLVDRKALAAFGEALAQGIEKDQALIYELA-G 549

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL     T+T       VL   +   P    + + R     
Sbjct: 550 EEFNINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGKHPIIEAILDYRQLTKL 609

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +           +  G++                        +    R H      +T 
Sbjct: 610 KSTY--------ADGLGKV------------------------IAPDGRIHTCFQNTVTA 637

Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +++P+   I     +   +R   +A+ GK LV AD + IE R+LA MAG+Q  ++
Sbjct: 638 TGRLSSTEPNLQNIPIRTQLGAQLREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIE 697

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            F +G D++  T ++ F V P QVT   R   K +   + Y     +  +          
Sbjct: 698 GFHSGADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGIVYGISPFSLSQD--------- 748

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                 IG + ++ K+   +  +  S +
Sbjct: 749 --------------------------------------IGVSVQQAKEYMDKYFAHYSGV 770

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +    EQ  ++G       RR                 LP  +S  +          
Sbjct: 771 RAYMDGVVEQGKQDGYVATLFGRR---------------RWLPELKSSNFN--------- 806

Query: 581 NTTTRQLTREYTYGGKLTENI-VQAVSRDILAEGMMNATKAGYD------IVLTVHDEIV 633
                      ++G ++  N+ +Q  + DI+   M+              +VL VHDE++
Sbjct: 807 ---------TRSFGERVALNMPIQGTAADIIKLAMIRVRDRLLREGLEGRLVLQVHDELI 857

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
            E P+ +      ++   M         +PL AE
Sbjct: 858 VECPEAEAETVCRLVKEEMEGVCQ--LSIPLLAE 889


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/559 (16%), Positives = 170/559 (30%), Gaps = 86/559 (15%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCVHDPVMPQ--------V 56
           +D ET S   L       +A+ V +   A+    D+        H    PQ         
Sbjct: 323 LDTETTSLDPL-------HADLVGIS-CAWQAGGDYQAVYVPVGHRDAGPQLDRQTVLTA 374

Query: 57  LKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           L+  LE+     +A N+ ++ R   +   +        +    +  S+     L  + E 
Sbjct: 375 LRPWLEDPQAAKLAQNAKYDWRVFWRHGIHPAGLARDTLLESYVLNSSHNGHDLDTLAE- 433

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +    +    +E++ +            RN  +   A  L   Y   D  V   +   L
Sbjct: 434 -RYLQHQNIRYEEVVGK--------GKSARNFADVPVAEAL--PYAAEDADVCLRVDALL 482

Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P           L   E  L  +   + + G  +D A    L+  +  +    +Q+   
Sbjct: 483 WPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEVLSTELSRDMADCEQKAFV 542

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLTPQAIQVFNNRMRA 283
           L  G   +    ++++  LF +  L +   T             +L   A          
Sbjct: 543 LA-GQSFNLNSPKQIQEILFDKMRLPVLKKTPGGQPSTNEDVLAQLAVHADLP------- 594

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                R  L + G ++         P    P   R H    Q +
Sbjct: 595 ---------------------RLILDYRGMAKLKNTYADALPQMINPDTGRVHTHFQQAV 633

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                  ++DP+   I         +R   +A EG  L+ AD + IE R+LA ++G+   
Sbjct: 634 AATGRLSSNDPNLQNIPVRTEQGRRIRQAFVAEEGHWLLSADYSQIELRILAHLSGDARL 693

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F++AP  V    R   K +   L Y         +A   G++
Sbjct: 694 LQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRAAKAINFGLIYGQTPY---GLAQQLGID 750

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +      E +     +    +    +    +   G          R  +    
Sbjct: 751 QAAARQYMD--RYFERYLGVLEYMAQTRALAKKQGYVETLFGRRL--YVPEIRSSNPARR 806

Query: 519 ELWNELHQAFEQTIENGKA 537
                  +A       G A
Sbjct: 807 T---YAERAAINAPMQGTA 822


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 114/674 (16%), Positives = 198/674 (29%), Gaps = 162/674 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP-----QVLKEALENTDV 66
           ID    G+        ++  +              H   P +P     + L   L +  +
Sbjct: 344 IDTETTGLNP--RHAKLVGISVATAPGRAAYVPLGHEDGPQLPRPLALERLAPVLADPSI 401

Query: 67  TIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
             + HN+ F+  VL+        P+     T++++ + G       + E   L       
Sbjct: 402 LKIFHNAKFDLHVLERAGLADATPVD---DTMLMSYTLGAGRHGHGMDELSALHLDH--- 455

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------L 175
                 R    +                      Y   D  VT  ++            L
Sbjct: 456 ------RPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRPRLRTEAAL 509

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
               + E+ L  +   +   G  VD A   +++         + +E+E L  G   +   
Sbjct: 510 ALYETMERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREIEKLA-GRAFNPGS 568

Query: 236 LEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLK 290
            ++L   LF E GL     T+T    T   VL           ++V   R      +   
Sbjct: 569 PKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRVLEWRQLQKLKSTYA 628

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              + E   +D R+  +                                 Q IT      
Sbjct: 629 DALVGEIDIADQRVHTSFS-------------------------------QAITTTGRLS 657

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +++P+   I         +R   IA+ GK L+ AD + IE R+LA +A      ++F  G
Sbjct: 658 SNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKG 717

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T A  F +    +    R   K +   + Y   A     +A   G+  +     
Sbjct: 718 EDIHARTAAEVFGLPMEGMDPMVRRRAKAINFGIIYGISAF---GLARQLGIENSEA--- 771

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                    K+      +R  E+   ++
Sbjct: 772 -----------------------------------------KRFIDAYFARYPEIRRYMN 790

Query: 526 QAFEQTIENGKAIIA-RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
           +  E    +G  +    +R  VP +  K          P+ R          R  +N   
Sbjct: 791 ETAEFARTHGYVLTPFGRRCYVPGITEKN---------PARRGYA------ERQAINAPL 835

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--IVLTVHDEIVCETP- 637
                             Q  + DI+   M+        AG D  ++L VHDE+V E P 
Sbjct: 836 ------------------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHDELVFEAPK 877

Query: 638 DTDEFNASMLYHLM 651
           D  E  A +   +M
Sbjct: 878 DQAEATAKLACAVM 891


>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
 gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
          Length = 932

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 102/643 (15%), Positives = 181/643 (28%), Gaps = 150/643 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  L++  +  +  N  ++  +   C     PI   +  +  A++ GL         + 
Sbjct: 410 LKPMLQDDSILKIGQNMKYDAKIFARCGVDVAPIDDTML-MSYAQNAGL-HNHGMDTLSD 467

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +L        K L+                    R       +Y   D  +T  +++ L+
Sbjct: 468 RLLGHTPIPIKSLL----------GTGKSAITFDRVDVAEAVKYAAEDADITLRLWQHLK 517

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E+ L  +   +   G  VD      ++     +   L+ E+  L 
Sbjct: 518 PQLHVKGVTTVYETLERPLVPVLAEMEMTGIKVDRDTLSRMSNAFAQKMAGLEAEIHELA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   LF E G+      +T    T   VL           +V + R  
Sbjct: 578 -GRSFNVGSPKQLGEILFDEMGIEGGKKGKTGAYATGADVLEDLAIEHELPGRVLDWRQL 636

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          S+                  R H      
Sbjct: 637 -------------------------------SKLKSTYTDALQNHINAETGRVHTSYSIA 665

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
             +     ++DP+   I         +R   IA EGK LV  D + IE R+LA +A    
Sbjct: 666 GANTGRLASTDPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVADIPS 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  G D++  T +  F+V   Q+T D R   K +   + Y        +       
Sbjct: 726 LKQAFADGMDIHAMTASEMFDVPLDQMTSDIRRQAKAINFGVIYGISGFGLARNLRI--- 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                              +A+ F     E  P   I      T        + ++H  V
Sbjct: 783 ----------------PRFEAQGFIDRYFERFP--GIRTYMDDTVA------FAKEHGYV 818

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             L+                                           GR +   ++G   
Sbjct: 819 QTLF-------------------------------------------GRKINTPEIGAKG 835

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----IVLTVHDEIV 633
                  R                +Q  + D++   M+    A  D    ++L VHDE++
Sbjct: 836 PQAGFAKR----------AAINAPIQGTAADVIRRAMVRMPDAIADQPAKMLLQVHDELL 885

Query: 634 CETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673
            E  +  +         +M +    A    + L A+  E + +
Sbjct: 886 FEVENGAQEKLIETARDVMENAAMPAVKLDVTLTADAGEGQNW 928


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 121/694 (17%), Positives = 203/694 (29%), Gaps = 174/694 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64
           D     +   +    ++  +F             H    +PQ L         K  LE+ 
Sbjct: 346 DTETTSLDPMS--ARLVGMSFALAQGEAAYLPLAHRGTDVPQQLPLDEVLARLKPWLESD 403

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
               +  N  ++  VL    N  I +       +L              E+  L S K  
Sbjct: 404 RHAKLGQNLKYDAHVL---LNHGIRLGGITHDTLL--------------ESYVLESDKPH 446

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-----VTREIFKRLEPLS 179
           +   L  R     T        K   +  +      C          VT  + + L P  
Sbjct: 447 DMDSLAKRHLGLTTIPYTEVCGKGAKQIGFDEVALDCAAAYAAEDADVTLRLHETLWPQV 506

Query: 180 SK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E     +   +   G  +D  L     + +      L+ E   L  G
Sbjct: 507 EALPRLAALYRDVELPTLQVLFEMERTGVLIDPFLLAQHGEELGRRLLGLEAEAHVLA-G 565

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    ++L   LF +  L +   T T    T + VL+   +  P    +  +R  A 
Sbjct: 566 QPFNLGSPKQLGEILFGKLALPVLKKTATGQPSTDEDVLTQLAEDYPLPKLLLEHRSLA- 624

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                         +         P    P+  R H    Q   
Sbjct: 625 ------------------------------KLKSTYADKLPRMVNPKTGRVHTCFSQATA 654

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R+  IA     +V AD + IE R++A ++G+   L
Sbjct: 655 VTGRLASTDPNLQNIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLL 714

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F VAP++V+ +QR   KV+   L Y   A     +A   G+  
Sbjct: 715 EAFAEGEDVHRATAAEVFGVAPSEVSSEQRRYAKVINFGLIYGMSA---HGLAKNLGIER 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                             A+ +       +P        +    ER+K            
Sbjct: 772 GA----------------AQAWIDRYFARYP-------GVADYMERIKA----------- 797

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 + + +T+   +                       L LP  R+            
Sbjct: 798 --EAKDKGYVETVFGRR-----------------------LHLPDIRA------------ 820

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIV 633
                +Q  R            +Q  + D++ + M      + A+     +VL VHDE+V
Sbjct: 821 -----QQAGRRQAAERAAINAPMQGTAADLIKKAMIAVSGWLRASGLKSRLVLQVHDELV 875

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
            E P  +     + L  LM      A  +PL  E
Sbjct: 876 LEVPVAEVETLRAALPGLMGGVA--ALSVPLLVE 907


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 102/621 (16%), Positives = 201/621 (32%), Gaps = 136/621 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAV 112
             K  LE+ D+    +N   +   L      +I +      + +A      ++    +  
Sbjct: 368 DFKAVLESKDIKKYGYNMKEDYVAL---MPYEIALKGMSFDIAIAEYLIDSTSTNTSECG 424

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A+K   + ++  +EL+ +  K +  E L       +  +           +    E  
Sbjct: 425 AIAMKYLMKSVKSKEELLGKGVKAKKFEDLTKEELSGYISSILNTVVNAMPKMKEEIE-S 483

Query: 173 KRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++E L    E  L  +   +   G  VD  +   L +      + L++E+     G   
Sbjct: 484 TKIEKLFDDVEMPLVEVLGNMEYTGIKVDKEMLDELGKEFTKIISSLEEEIYGYA-GEEF 542

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF +  L +   T+T       VL   K   P   ++   R        
Sbjct: 543 NINSPKQLGVILFEKLELPVIKKTKTGYSTNAEVLEKLKDKHPIIDKIGEYRQ------- 595

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                     +              P   R H   +Q IT    
Sbjct: 596 ------------------------IVKLNSTYVEGLTALINPIDGRIHSTFNQTITTTGR 631

Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +++P+   I     I   +R+  ++ + K+LV AD + +E RVLA M+G+Q  + AF+
Sbjct: 632 ISSTEPNLQNIPVRMEIGRRLRAVFVSDDEKRLVDADYSQVELRVLAHMSGDQNMIDAFK 691

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++  T ++ FNV   +VT + R+  K +   + Y           +  GL+ +   
Sbjct: 692 HGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIYGK---------TDFGLSED--- 739

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                              +     + K+      ++  ++   
Sbjct: 740 -----------------------------------LNIPVPQAKQYIESYFAKYEKIKEF 764

Query: 524 LHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           +    E   ++G    +  +RR +P +   K KN +                  R+ +N 
Sbjct: 765 MDNIIETAEKDGYSQTMFNRRRYIPEI---KSKNFMERN------------RGKRAAMNA 809

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
                              +Q  + DI+   M+N        +    ++L VHDE++ ET
Sbjct: 810 P------------------IQGSAADIIKIAMVNVFRRLEKEELRSKLILQVHDELIVET 851

Query: 637 PDTDEFNASMLY-HLMTSNPS 656
           P  +      +    M +   
Sbjct: 852 PIDELEKVEKIVREEMENAVD 872


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 106/628 (16%), Positives = 187/628 (29%), Gaps = 158/628 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113
           LK   EN  +  +  N  ++  +L    N  I +       ++A     P     +  + 
Sbjct: 405 LKPFFENESILKIGQNLKYDFKILA---NYGIEVKGEFFDTMIAHYLLNPDMRHNMDLLS 461

Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           EA L  S   +E    LI +  KG+                  L  EY   D  VT ++ 
Sbjct: 462 EAYLGYSPISIET---LIGKKGKGQ---------LTMRAVPAELQKEYAVEDTDVTLQLK 509

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
               PL  K          E  L  +   +   G  VD      L++ +  +   L++ +
Sbjct: 510 HVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTHFLAQLSKEIAADLIGLEKTI 569

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVF 277
            S       +    ++L   LF +  L  +          T + VLS           V 
Sbjct: 570 FSQA-EESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASKHEIVANVL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                                           F    +         P +  P   R H 
Sbjct: 629 E-------------------------------FRALQKLQSTYIEALPREVNPHTGRIHT 657

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
              Q +T      ++ P+   I         +R   +   E   L+ AD + IE R++A 
Sbjct: 658 TFMQAVTATGRLSSNQPNLQNIPIRTPRGSQIRKAFVPRNEDYTLLSADYSQIELRIIAA 717

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ E   ++AF  G+D++ +T A+ F V    VTK+QR+  K +   + Y   A      
Sbjct: 718 LSEEDHMIEAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSA------ 771

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               GL+  T     ++    + +       +   E                        
Sbjct: 772 ---IGLSQQTSLSRSQSKELIDTYYQTYPKLKTYIEK----------------------- 805

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                  +++      + QTI         +RR +P VY +                   
Sbjct: 806 -------QIFFAREHGYVQTI-------LGRRRYLPDVYSR------------------- 832

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625
                    N   R                +Q  + DI+   M+              ++
Sbjct: 833 ---------NQVVRGAAERNA-----VNAPIQGSAADIIKIAMVRIAQRIQKEGLATRML 878

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMT 652
           L VHDE++ + P  + E   +++   M 
Sbjct: 879 LQVHDELLFDVPKKELEVAKALIREEME 906


>gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 780

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 153/474 (32%), Gaps = 73/474 (15%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177
           E+  +  K  + + +          A    G Y   +  +T  + +           L+P
Sbjct: 467 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L   L+ + G+ +   T T       +      +        +               
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      +Q+   S+         P Q  PR  R H    Q +       +SDP+ 
Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           T A  F V    VT D R   K +   L Y   A     +A   G++       
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAY 780


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/544 (18%), Positives = 168/544 (30%), Gaps = 95/544 (17%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVG 113
           LK  LEN ++     N  ++  VLK    +++         +LA     P A   L  + 
Sbjct: 426 LKPLLENPEIPKTGQNLKYDILVLKKY-GVELAPVG--FDTMLASYVLNPEARHNLDDMA 482

Query: 114 EALKLSSQKMEE------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            AL L  Q  +       GK+ I  F                     R   +Y   D  +
Sbjct: 483 -ALYLGRQTTKYTELVGTGKQTIGIF-----------------EVEPRKLSDYACQDADI 524

Query: 168 TREIFKRLEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERT 216
              +   LE    K  EL  +              +  +G  +D A    L+  V  E  
Sbjct: 525 ALRLRYSLEEQLEKTPELLEVCRKLEFPLVRVLADMEHKGISIDTAHLEQLSIKVTGELA 584

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQA 273
            L + +   T G   +    ++L   LF    L  +  T+T      +VL     L P A
Sbjct: 585 TLTERIFEAT-GETFNIDSPKQLGHILFDVLKLPAKKATKTGYSTNVQVLEELAMLHPVA 643

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R                                  +         P    P   
Sbjct: 644 SDLLEYRSL-------------------------------QKLKSTYIEALPKMINPLTG 672

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEAR 387
           R H   +Q IT      +S+P+   I     +   +R   I S  G  L+ AD + IE R
Sbjct: 673 RVHTSFNQSITATGRLSSSNPNLQNIPIRTELGKEIRRAFIPSNPGNLLLSADYSQIELR 732

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           + A ++G+   ++AF   ED++  T    F+    ++T D R   K +   + Y      
Sbjct: 733 IAAELSGDPMLIEAFRNHEDIHAATARVIFDT--KEITPDMRRKAKEVNFGVLYGIQPFG 790

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +     G+       ++ T  A   +    +  + + E   +       +G      +
Sbjct: 791 LSQ---RLGIPQKEAKEIIDTYMAK--YPGMFSSLQTIIEEAKKKGYVTTLMGR-----R 840

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGR 566
           +     +S  S +     +    T   G A    K     +    K       ++L    
Sbjct: 841 RYVPDLNSANSNIRKAAERVTMNTPIQGTAADIIKFAMCSISRELKKGEFRSAMLLQVHD 900

Query: 567 SLVY 570
            L++
Sbjct: 901 ELLF 904


>gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70]
 gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70]
          Length = 878

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 91/623 (14%), Positives = 193/623 (30%), Gaps = 135/623 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           LE+        +    R ++   +   I +      L++A     PS + + V    K  
Sbjct: 363 LEDESKKKSVFDGK--RAIVSLKWQ-GIQLRGVQFDLLIASYLLNPSQSTEDVASIAKTK 419

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                +  E I  + KG   +   +     H           + D     +  ++    +
Sbjct: 420 QYTDVQSDEAI--YGKGAKQKIPDEPVLAEHLVRKAAAIRALEQDFICDLQENEQYSLFT 477

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +DV     + + +  +  +++QE+  L  G   +    ++L
Sbjct: 478 DLELPLSSILAEMEFTGVKIDVKRLKEMGEELTEQLKEIEQEIYELA-GQEFNINSPKQL 536

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL           ++ + R    +     +  L++
Sbjct: 537 GVILFEKLQLPVLKKTKTGYSTSAEVLEKLAPQHEIVEKILHYRQL-GKLQSTYIEGLLK 595

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++ D                               ++ H   +Q +T      +++P+ 
Sbjct: 596 VVHHD------------------------------TNKVHTIFNQALTQTGRLSSTEPNL 625

Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   + SE    +  AD + IE RVLA +A ++  + AF    D++ 
Sbjct: 626 QNIPIRLEEGRKIRQAFVPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHDLDIHT 685

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+V   +VT + R   K +   + Y        +      +     +  +K   
Sbjct: 686 KTAMDIFHVNEDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLNITRKEASEFIKRYF 742

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                    +    V +   ++ Q  +Q
Sbjct: 743 -----------------------------------------EIFPGVKQYMKDIVQEAKQ 761

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             +     +  +RR +P +  +           + RS         R+ +NT        
Sbjct: 762 --KGYVTTLLHRRRYLPDITSRNF---------NLRSFA------ERTAMNTP------- 797

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+ + M++             ++L VHDE++ E P  +    
Sbjct: 798 -----------IQGSAADIIKKAMIDLSNRLKKENMKARMLLQVHDELILEAPKEEVERL 846

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666
             +   +M +       +PLK +
Sbjct: 847 QQIVPEVMENAVQ--LRVPLKVD 867


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 175/550 (31%), Gaps = 87/550 (15%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSA----LKAVGEA 115
           L ++   +V H    +   L        I          LA     PS     L  +   
Sbjct: 368 LLDSGARLVGH----DLKPLYNWLYSQGIEPPAPAFDTALAAYLLDPSRSSYDLADLCRQ 423

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L                 G+T +    R         R+  E     V     +++  
Sbjct: 424 HGL------------GELPPGDTPDLWATRASVLPELHRRMEAELAAQGVD---RLYR-- 466

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
                 E  L  +   +   G  +D A  H ++  ++    ++ QE+  L  G+  +   
Sbjct: 467 ----EVELPLMPILAEMEAVGVGIDPAALHEMSVELERRILQVSQEIYELA-GMQFNISS 521

Query: 236 LEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            ++L   LF + GL     T++    T   VL       P A +V + R     +     
Sbjct: 522 PKQLGDVLFGKLGLPSGKKTKSGGYSTDAEVLEELAAAYPIAARVLDYR-----TLTKLK 576

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            T V+A+                            Q + R  R H    Q +       +
Sbjct: 577 GTYVDALG---------------------------QLIARDGRIHTTFAQTVAETGRLSS 609

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            DP+   I         +R   +A  G  L+ AD + IE RV+A  +G+    +AF   +
Sbjct: 610 KDPNLQNIPIRIEEGRRIRKAFVARPGCVLLSADYSQIELRVVAHFSGDPALREAFLHDQ 669

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  F V   QVT + R   K +   L Y         +A + G++       +
Sbjct: 670 DIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLIYGQTDF---GLARSVGISRAEARAFI 726

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +T  A           R   E     A E  ++ T  +  ++   + + RV  +     +
Sbjct: 727 ETYFAK------FAGVRRYMEEKKAEAREKGYVTT-LDGRRRPLPEINHRVFTIRQNAER 779

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
               T   G A    KR  + +    +++  +  ++L     LV+         L     
Sbjct: 780 MAINTPIQGTAADLMKRAMIAVRRAMREEGLSARMILQVHDELVFECPVGEVDRL----A 835

Query: 586 QLTREYTYGG 595
           +L R    G 
Sbjct: 836 RLVRREMEGA 845


>gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 921

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 204/705 (28%), Gaps = 176/705 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VEL---WDCVHDPVMP- 54
             L +D ET SP                ++  +F   +     V +        D     
Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393

Query: 55  QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--L 109
           + ++E L    ++ V  V  N  ++  VL+   N    ++      +LA     P     
Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLE---NHGFILNNIQFDTMLASYVIQPEGRRH 450

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                A  L +       +L+              +   +         EY   D  +T 
Sbjct: 451 NMDVLAKDLLNYDTITYDDLVG--------TGKKKKELTDIDP--EQVAEYAAEDADITF 500

Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            +++              L + E  L  +   +   G  +DV     L +  D E   L+
Sbjct: 501 RLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHLE 560

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQV 276
            E+     G   +    ++L+  LF +  L     T+T       VL       P   ++
Sbjct: 561 SEIHKQA-GRSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPIVEKL 619

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                            +   ++         P    PR  R H
Sbjct: 620 L-------------------------------DYRKYTKLKSTYVDALPKMVNPRTGRIH 648

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390
              +Q I       ++DP+   I         +R          +++  D + IE R++A
Sbjct: 649 TSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMA 708

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   L+A+  G D+++ T A  + V   +VT + R   KV+  ++ Y        +
Sbjct: 709 HISKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSR 768

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                    ++A++F       +P                    
Sbjct: 769 NLRI-------------------PRDEAKSFIERYMIQYP-------------------- 789

Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                    + + +    E   +NG    +  +RR +  +                    
Sbjct: 790 --------GVKSYMDSMVEFAEKNGYVQTLTGRRRLIVDINSTHKS-------------- 827

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD-- 623
                  R  +N+                   VQ  S D++   M+N      K  Y   
Sbjct: 828 -AKEAAKRVAINSP------------------VQGTSADMIKIAMINIHEDIEKKHYRSR 868

Query: 624 IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEG 667
           ++L VHDE+V E    ++    + +   M +       LP+  EG
Sbjct: 869 MLLQVHDELVFEVHKKEKEEFKISMKKHMENAMP--LDLPILVEG 911


>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
 gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
          Length = 904

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 93/501 (18%), Positives = 154/501 (30%), Gaps = 73/501 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVG 113
           + L+  LE+   + + H++ ++  V     N  I +      T++ A        +    
Sbjct: 383 ERLRGWLEDATRSKLLHHAKYDTHV---FANEGIALRGVTEDTMLQAYVLESHRGVGLND 439

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A +   +     ++L  +  K                 A    G Y   D   T ++ +
Sbjct: 440 LAQRYLGRSGVNYEDLCGKGAKQ----------IGFDEVAVDRAGFYAAEDADFTLQLHQ 489

Query: 174 RLEPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            L P  + E E  Y        +   I   G  VD       +  +  E   L+Q    L
Sbjct: 490 ALRPGVTGELERIYKLELEVSRVLVAIERNGVKVDAEELGRQSHELGREMLALEQRAYEL 549

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +    ++L   LF   GL +   T     +T + VLS   +  P    +   R 
Sbjct: 550 A-GQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLLEYR- 607

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G S+         P    P   R H    Q
Sbjct: 608 ------------------------------GLSKLKSTYTDKLPRMINPATGRVHTHYSQ 637

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    +SDP+   I         VR   +A     LV AD + IE R++A ++ + 
Sbjct: 638 AAVITGRLASSDPNLQNIPVRTLAGRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDA 697

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF  GED++  T A  F V   +VT +QR   K +   L Y  G      +AS  G
Sbjct: 698 NLQRAFAAGEDIHRATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGVF---GLASNLG 754

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +    A               ++    A E  ++ T   R +       + 
Sbjct: 755 ITRDAAQAYIDRYFARYP------GVARYMDDTRRLAREQGYVETVFGR-RLQLPDIRAA 807

Query: 517 VSELWNELHQAFEQTIENGKA 537
                    +A       G A
Sbjct: 808 SGPRRQGAERAAINAPMQGTA 828


>gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 921

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 204/705 (28%), Gaps = 176/705 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VEL---WDCVHDPVMP- 54
             L +D ET SP                ++  +F   +     V +        D     
Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393

Query: 55  QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--L 109
           + ++E L    ++ V  V  N  ++  VL+   N    ++      +LA     P     
Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLE---NHGFILNNIQFDTMLASYVIQPEGRRH 450

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                A  L +       +L+              +   +         EY   D  +T 
Sbjct: 451 NMDVLAKDLLNYDTITYDDLVG--------TGKKKKELTDIDP--EQVAEYAAEDADITF 500

Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            +++              L + E  L  +   +   G  +DV     L +  D E   L+
Sbjct: 501 RLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHLE 560

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQV 276
            E+     G   +    ++L+  LF +  L     T+T       VL       P   ++
Sbjct: 561 SEIHRQA-GRSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPIVEKL 619

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                            +   ++         P    PR  R H
Sbjct: 620 L-------------------------------DYRKYTKLKSTYVDALPKMVNPRTGRIH 648

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390
              +Q I       ++DP+   I         +R          +++  D + IE R++A
Sbjct: 649 TSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMA 708

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   L+A+  G D+++ T A  + V   +VT + R   KV+  ++ Y        +
Sbjct: 709 HISKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSR 768

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                    ++A++F       +P                    
Sbjct: 769 NLRI-------------------PRDEAKSFIERYMIQYP-------------------- 789

Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                    + + +    E   +NG    +  +RR +  +                    
Sbjct: 790 --------GVKSYMDSMVEFAEKNGYVQTLTGRRRPIVDINSTHKS-------------- 827

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD-- 623
                  R  +N+                   VQ  S D++   M+N      K  Y   
Sbjct: 828 -AKEAAKRVAINSP------------------VQGTSADMIKIAMINIHEDIEKKHYRSR 868

Query: 624 IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEG 667
           ++L VHDE+V E    ++    + +   M +       LP+  EG
Sbjct: 869 MLLQVHDELVFEVHKKEKEEFKISMKKHMENAMP--LDLPILVEG 911


>gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4]
 gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4]
          Length = 956

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 103/691 (14%), Positives = 198/691 (28%), Gaps = 176/691 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQV------ 56
           ID ET S           Y     ++  +F    H        H      + +       
Sbjct: 364 IDTETTSV----------YWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLDRDT 413

Query: 57  ----LKEALENTDVTIVAHNSYFERTVLKAC-----FNLDIPIHRWICTLVLARSNGLPS 107
               LK  LEN+ +  +  +  ++  +L         N+    + W    +LA      +
Sbjct: 414 VLVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 473

Query: 108 --ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                    A      +    +++  +  K  + + +          A  +  +Y   D 
Sbjct: 474 VTRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQV----------AIDIASDYACEDA 523

Query: 166 TVTREIFKRLE-----------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            +T ++F+               L + E     +   +   G  +     + L++  D E
Sbjct: 524 DITYQLFELFSQKLADDTNNAKLLHALEIPTAEILCQMEAHGILIKRPFLNELSKRFDEE 583

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L++    +  G   +    ++L   LF + G+     T+T      S+ + +  +  
Sbjct: 584 IIALEKRAYEVA-GEEFNLGSPKQLGEMLFDKLGVAGGKKTKTGQ---YSTGEAVLSKID 639

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP--RP 332
                                        +  TL++ G S+            N+     
Sbjct: 640 HPL--------------------------VDITLEYRGLSKLKSTYTDA--LDNVADSET 671

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H    Q +T      ++DP+   I         +R   IA EG+ ++ AD + IE R
Sbjct: 672 DRVHTSYHQALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELR 731

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A  +G++    AF  G D++  T A       A VT  +R   K +   L Y   A  
Sbjct: 732 LMAHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAINFGLLYGMSAF- 790

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +A    ++ +     +                           ++D  I T      
Sbjct: 791 --GLAKQLQMSRSEAQDYIDMY------------------FERYPGVKDYMINTRA---- 826

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                         +     + +TI   K           +V                  
Sbjct: 827 --------------SAYEHGYVETILGRKLYTPDINHSNRMV------------------ 854

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YD 623
                 G  R+ +N                     Q  + D++   M+   K        
Sbjct: 855 ----KQGAERAAINAPL------------------QGSAADLIKLAMIAVDKVLPKHQAK 892

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654
           ++L VHDE+V E           +  L+T  
Sbjct: 893 MLLQVHDELVFEVDAN---KVDEISQLITDA 920


>gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1]
 gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1]
          Length = 913

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 116/650 (17%), Positives = 198/650 (30%), Gaps = 146/650 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D PV+      D V+   LK  LE+ +   V  +  ++  VL         I     TL+
Sbjct: 377 DAPVQ---LPRDEVL-ARLKPWLESVEHKKVGQHLKYDEQVLANYGIEMRGIE--HDTLL 430

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            +              AL+    K  + +E+  +                    A     
Sbjct: 431 QSYVVESHRTHDMDSLALRHLGVKTIKYEEVAGKGAGQ----------IGFDEVALDKAA 480

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207
           EY   D  +T  + + L P  + E+ L Y+   I              G  +D       
Sbjct: 481 EYAAEDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQ 540

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263
           +  +     +L+ E   L  G   +    +++    F +  L +         +T + VL
Sbjct: 541 SSEIATRLIQLESEAYVLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVL 599

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               +  P    +  +R                               G S+        
Sbjct: 600 QKLAEDFPLPKILLEHR-------------------------------GLSKLKSTYTDK 628

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
            P        R H    Q +       ++DP+   I         +R   IA  G KLV 
Sbjct: 629 LPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  L++F  GED++  T A  F+V P +V+ DQR + KV+   
Sbjct: 689 ADYSQIELRIMAHISGDESLLRSFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFG 748

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y   +     +AS  G+  +     +        +       R+M E     A    +
Sbjct: 749 LIYGMSSF---GLASNLGITRDAAKLYID-----RYFARYPGVARYMDETRV-SAKAKGY 799

Query: 499 IGTACERVKKAW-RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
           + T   R  + W  + +           +A       G A    K   +           
Sbjct: 800 VETVFGR--RLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMI----------- 846

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                                      ++   E   G ++   I+Q              
Sbjct: 847 -------------------------AVQKWIEESKIGTRM---IMQ-------------- 864

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                     VHDE++ E PD +  +    L  LM         +PL AE
Sbjct: 865 ----------VHDELILEVPDAELSDVRKRLPELMCGVAD--LKVPLVAE 902


>gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
 gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 106/638 (16%), Positives = 188/638 (29%), Gaps = 144/638 (22%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
            + L+  LE+  V  +  N  F   +L       I +       +++ +      A     
Sbjct: 493  EALRPILESPGVLKIGFNIKFTAVLLAQH---GITLQNADDVQLMSYALDAGRHAHGLDA 549

Query: 114  EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             A      K     E+I                    + A      Y   D  V   +++
Sbjct: 550  LAETWLGHKTLSYGEVI----------GSGKAKLSFDQVAIDRATCYAAEDADVALRLWR 599

Query: 174  RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             L+P    E+           L  +   +  RG  +D A+   L+        +++ E+ 
Sbjct: 600  VLKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQTAARIEAEIR 659

Query: 224  SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +  G   +    ++L   LF +  L     T+T      +   +   +    F      
Sbjct: 660  EIA-GEEINIGSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELAEQGHEFP----- 713

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                 R  L +   S+         P    P+  R H       
Sbjct: 714  ---------------------RKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAA 752

Query: 344  THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            T      +++P+   I         +R   IA+ G KLV AD + IE R+LA +A     
Sbjct: 753  TTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVL 812

Query: 399  LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             +AF+ G D++  T +  F V    +  + R   K +   + Y   A     +A+  G+ 
Sbjct: 813  KQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAF---GLANQLGIP 869

Query: 459  LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                             E+A  + +   E  P        I    +  +   R  H  V 
Sbjct: 870  R----------------EEAGAYIKKYFERFP-------GIRAYMDATRDFCR-AHGFVE 905

Query: 519  ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             L+                                           GR   Y D+     
Sbjct: 906  TLF-------------------------------------------GRKCHYPDIK---- 918

Query: 579  YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
              N + R          +L     Q  + DI+   M+    A         ++L VHDE+
Sbjct: 919  ASNASVRAFNERAAINARL-----QGTAADIIRRAMVRMEDALAEKKLSAQMLLQVHDEL 973

Query: 633  VCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            + E  D +      ++  +M   P  A    +PL+ + 
Sbjct: 974  IFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDA 1011


>gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)]
          Length = 1018

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 98/620 (15%), Positives = 190/620 (30%), Gaps = 150/620 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113
           LK  LEN ++  +  +  ++  VL+     L+     W    +LA      +A       
Sbjct: 484 LKPILENPEIGKIGQHLKYDAHVLRKYGIELNTSPKNWEMDTMLASYVLNAAATRHSMDD 543

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K  T + +          A  +  +Y   D  +T ++F+
Sbjct: 544 LARHYLHTQTISFEDVAGKGAKQVTFDKV----------AINIASDYACEDADITYQLFE 593

Query: 174 RLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +     +     L              +   G  +  +  + L++  D E  +L+++ 
Sbjct: 594 LFQDRLKDDTVNQRLLHELEIPVAQILCQMESEGIMIKRSFLNELSERFDEEIIELEKQA 653

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
                G   +    ++L   LF + G+     T++    T + VLS       +    + 
Sbjct: 654 YVEA-GEEFNLGSPKQLGEVLFDKLGVIGGKKTKSGQYSTGEAVLSKIDHPLAEIALEYR 712

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +  +   +    L+ + +                                     R H  
Sbjct: 713 SLAKLKNTYTDALDAVADK---------------------------------DTDRVHTS 739

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      ++DP+   I         +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 740 YHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQAFIAPEGRVLLAADYSQIELRLMAHFS 799

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+    KAF  G D++  T A     +  +VT  +R   K +   L Y   A     +A 
Sbjct: 800 GDANLTKAFNEGLDIHTATAAEVLGKSVDEVTPTERRNAKAINFGLLYGMSAF---GLAK 856

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++       +      + ++      R+MQ+                          
Sbjct: 857 QLQMSRGEAQDYID-----QYFKRYPGVRRYMQDTRD----------------------- 888

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                   N + + + +TI                                GR L   D+
Sbjct: 889 --------NAVDKGYIETIL-------------------------------GRKLYTPDI 909

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629
            +N    N   R+          L     Q  + D++   M+   K        ++L VH
Sbjct: 910 NSN----NQMVRRGAERAAINAPL-----QGSAADLIKLAMIAVDKVLPKQNAKMLLQVH 960

Query: 630 DEIVCETPDTDEFNASMLYH 649
           DE+V E           L  
Sbjct: 961 DELVFEVDSDKADEIGELIK 980


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 103/604 (17%), Positives = 190/604 (31%), Gaps = 87/604 (14%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57
           ID    +  D     +        ++  +F  +          H  P MP+ L       
Sbjct: 336 IDAAALTAFDTETTALDP--MTARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDDVLA 393

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             K  LE+ D   V  +  ++  VL         I     TL+ +              A
Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLA 451

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+    K  + +++  +  K    + +       +                +T ++ + L
Sbjct: 452 LRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD----------ITLQLHQAL 501

Query: 176 EPLSSKE--QELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P  ++E   E  Y D  +            G  +D AL    +  +     +L+ +   
Sbjct: 502 YPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYE 561

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +    +++    F +  L +         +T + VL    +  P    +  +R
Sbjct: 562 LAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR 620

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                          G S+         P    P   R H    
Sbjct: 621 -------------------------------GLSKLKSTYTDKLPRMVNPATGRVHTNYA 649

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       ++DP+   I         +R   IAS G ++V AD + IE R++A ++G+
Sbjct: 650 QAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A     +AS  
Sbjct: 710 ASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASNL 766

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+  +     +                    E+    A +  ++ T   R +    + + 
Sbjct: 767 GITRDAAKLYIDRYFTRYP------GVAHYMEDTRTTAKDKGYVETVFGR-RLWLPEING 819

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVG 574
                     +A       G A    K   + +  ++ +D+    +++     LV     
Sbjct: 820 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPD 879

Query: 575 NNRS 578
           +  S
Sbjct: 880 DELS 883


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 185/578 (32%), Gaps = 86/578 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEAL----ENT 64
           +DL   G+     +  ++ +A  ++ H     PVE        + PQ + E L    E+ 
Sbjct: 322 VDLETTGLKP--AEAEIVGWAISWEKHRGFYIPVE-GPSGQLALDPQYVLEHLKPILEDP 378

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALKLSS 120
           ++ I   N  ++  VL       + +       ++A           +L  + E  +  +
Sbjct: 379 EILITNQNIKYDMVVLMRV---GVFLQGVSIDPMVASYLISAGERGHSLDKLSE--RYLN 433

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK------- 173
             M    ELI              + K           EY   D  +  ++ +       
Sbjct: 434 HTMIPISELI----------GSGKQQKKMFEVDVDKVAEYAVEDAEIAWQLSRILQDELK 483

Query: 174 ---RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                E     E+ L  +   +   G  VD A     +Q+++   T L  E+  +  G  
Sbjct: 484 HAGLWELYWELERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLISEIHEIA-GHE 542

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L+T LF E  L +   T+T      S  +KL P                   
Sbjct: 543 FNIASPLQLRTVLFEELNLPVFKKTKTGPSTDQSVLEKLAPLHALPAR------------ 590

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                             +    S+         P    P   R H   +Q++       
Sbjct: 591 ----------------ITEHRHLSKLKSTYLDALPGLVNPETGRIHASFNQVVAATGRLS 634

Query: 351 TSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +SDP+   I         +R   I   E  +L+ AD + IE R+LA ++ +    +AF  
Sbjct: 635 SSDPNLQNIPVRTQEGRQIRKAFIPQDENWRLLCADYSQIELRILAHLSQDVALSQAFRE 694

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++    +  F V   QV  D R   K +   + Y        +     G+  +  A 
Sbjct: 695 GADIHTAVASDIFRVPHDQVDSDMRRTAKAVNFGVIYGQSPFGLSE---AIGIPQSEAAG 751

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            ++               R   +   E   +  F+ T C R K+  +     V +  N  
Sbjct: 752 FIEDYFVRY------QGVREFLDQILEDCAKQKFVETICGR-KREIQGVRGGVQKQLNMP 804

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +    T+  G A    K+  + +    K + +   ML
Sbjct: 805 ERTAINTVIQGSAADLIKQAMLNVSDRIKQEQHPGRML 842


>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
 gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
          Length = 936

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 82/490 (16%), Positives = 159/490 (32%), Gaps = 48/490 (9%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT-LVLARSNGLPSALKAVG 113
             LK  LE      V  N  F R+VL+      I +       ++ +             
Sbjct: 411 DKLKPLLEKIAPQKVVFNLKFMRSVLRL---EGINLQGVAFDPMLESYLLDSTGKHDKAS 467

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             LK    ++   + +  +  K      +  ++   +              +    E F 
Sbjct: 468 LTLKYLQIEIASYEAIAGKGKKQLPFNQVSIKDITPYVGEHVELSLRLHLLLWPKLEKFP 527

Query: 174 RLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +L  L    E  L  +   +   G  +D  +    +  +     ++++E   +  G   +
Sbjct: 528 KLVALYEDIELPLAIVLSDVELGGVEIDATMLGAQSVEIGKRLLEIEKEAY-IEAGKEFN 586

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L++ LF +  L +   T                +                 KL 
Sbjct: 587 LSSPKQLQSILFEDLELPILKKTPKGAPSTGEEVLVELAE---------------TYKLP 631

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            LV            ++  G S+         P     +  R H    Q +T      +S
Sbjct: 632 KLV------------IEHRGLSKLKSTYTDKLPKMINAQTGRVHTSYHQAVTVTGRLSSS 679

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           DP+   I         +R   IA +G K+V AD + IE R++A ++ ++  L+AF TG D
Sbjct: 680 DPNLQNIPIRSEQGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSQDKGLLEAFSTGLD 739

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T +  F+V+  +VT +QR   K +   L Y   A     +A    ++ +     + 
Sbjct: 740 IHKATASEVFSVSVDEVTTNQRRSAKAINFGLIYGMSAF---GLAKQLKISRSDAKLYMD 796

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                  +     + +  ++   E    +  +G   +         +SR   L     +A
Sbjct: 797 --KYFHRYPGVLTYMQTTRDKAREQGFVETILGRRLQ-----LPHINSRNGILKKASERA 849

Query: 528 FEQTIENGKA 537
                  G A
Sbjct: 850 AINAPMQGTA 859


>gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72]
          Length = 880

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 119/667 (17%), Positives = 221/667 (33%), Gaps = 163/667 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85
            ++  A+G D   + +   D +  P+  + L K AL+  D+            VL + + 
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144
           +++P         LA+          +    +L  Q  +    E+  +  K         
Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436

Query: 145 RNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYC 198
           R  P   + +       +  +              +L+ L   EQ L ++   +   G  
Sbjct: 437 RALPEQEQLFEHLARKVQVLLETEKPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAGIK 496

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256
           V+      +    +     L QE+ +L  G   +    ++L T LF + GL LE    T+
Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYNLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555

Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           T       VL     + P   ++   R   S+     +  L EA+ +DG+          
Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                 H    Q +T      + DP+   I         +R   
Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643

Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
           +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT 
Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A+  G++       ++T    E +   +N+     
Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM---- 754

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                            E + +  R              + + +TI         +RR +
Sbjct: 755 -----------------ETIVREAR-------------DKGYVETI-------YHRRRSL 777

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
           P +              + R+   R+    R+ +N+                   +Q  +
Sbjct: 778 PDI--------------NSRNFNIRNF-AERTAINSP------------------IQGSA 804

Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659
            DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    A 
Sbjct: 805 ADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVRQLVKETMEAAIELA- 863

Query: 660 GLPLKAE 666
            +PL A+
Sbjct: 864 -VPLVAD 869


>gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
 gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
          Length = 845

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 124/634 (19%), Positives = 201/634 (31%), Gaps = 141/634 (22%)

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEA 115
           ++L   +V +      F   +    +  D  I  W+  L  A    LPS    L A    
Sbjct: 316 DSLAACEVGLYPDGESFVLALAGKEYRPDWDIEHWVDHLSRAERVYLPSLKDLLVADSAW 375

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR- 174
             L   +  +   L A     E     +D+ +  H+       +     +  T  I +R 
Sbjct: 376 EGLPYARCFDLS-LGAYLLDPEQRSYSWDKIRQRHQNQLETHPDNNALSIMETGRILRRE 434

Query: 175 ------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                 L  +   E  L  +   +  RG  +D+         V  E   L  E+  L  G
Sbjct: 435 LANSELLSLMQDIELPLVGVLVRMEKRGLAIDLEAFRRFLDEVQEELDGLTHEIYDLA-G 493

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              + R  +++   LF +  L     T     +T  +VL   + + P   ++   R    
Sbjct: 494 QEFNLRSSQQMAQVLFGDLELPTGRKTPGGVPSTSSQVLEGLRNVHPIIPKILRFRTLEK 553

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
             +                                      PQ +   SR H   +Q+ T
Sbjct: 554 LRSTYL--------------------------------EPLPQKVDDTSRLHTHFNQLAT 581

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S P+   I         +R C +A EG +LV AD + IE RVLA ++ +   L
Sbjct: 582 ATGRLSSSGPNLQNIPIRGEFGPRMRQCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLL 641

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A   ++A   V  + R   K +   L Y  G    QK++   G++L
Sbjct: 642 EAFTQGEDIHSRTAAVIMDIADEHVDSEARRQAKTINFGLLYGMGP---QKLSRELGISL 698

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           N                                     FI    +R+          VS 
Sbjct: 699 NEAK---------------------------------TFIQRYFDRL--------QGVSA 717

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            +  +  A +Q         A +RR +P +  +                           
Sbjct: 718 FYERIEDAAKQ--HGYVTTWAGRRRLLPDINSR--------------------------- 748

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
            N    Q  R           +VQ  + DI+   M+ A        AG  + L VHDE++
Sbjct: 749 -NANLAQQARRMA-----VNTVVQGSAADIIKMAMIEADGDTELADAGARLTLQVHDELL 802

Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P +  E     L  +M S       +PL  +
Sbjct: 803 LEVPREAAETAGKRLAAIMASVAD--MDVPLAVD 834


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 114/674 (16%), Positives = 198/674 (29%), Gaps = 162/674 (24%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP-----QVLKEALENTDV 66
           ID    G+        ++  +              H   P +P     + L   L +  +
Sbjct: 321 IDTETTGLNP--RHAKLVGISVATAPGRAAYIPLGHEDGPQLPRPLALERLAPVLADPSI 378

Query: 67  TIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
             + HN+ F+  VL+        P+     T++++ + G       + E   L       
Sbjct: 379 LKIFHNAKFDLHVLERAGLADATPVD---DTMLMSYTLGAGRHGHGMDELSALHLDH--- 432

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------L 175
                 R    +                      Y   D  VT  ++            L
Sbjct: 433 ------RPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRPRLRTEAAL 486

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
               + E+ L  +   +   G  VD A   +++         + +E+E L  G   +   
Sbjct: 487 ALYETMERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREIEKLA-GRAFNPGS 545

Query: 236 LEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLK 290
            ++L   LF E GL     T+T    T   VL           ++V   R      +   
Sbjct: 546 PKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRVLEWRQLQKLKSTYA 605

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              + E   +D R+  +                                 Q IT      
Sbjct: 606 DALVGEIDIADQRVHTSFS-------------------------------QAITTTGRLS 634

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +++P+   I         +R   IA+ GK L+ AD + IE R+LA +A      ++F  G
Sbjct: 635 SNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKG 694

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T A  F +    +    R   K +   + Y   A     +A   G+  +     
Sbjct: 695 EDIHARTAAEVFGLPMEGMDPMVRRRAKAINFGIIYGISAF---GLARQLGIENSEA--- 748

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                    K+      +R  E+   ++
Sbjct: 749 -----------------------------------------KRFIDAYFARYPEIRRYMN 767

Query: 526 QAFEQTIENGKAIIA-RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
           +  E    +G  +    +R  VP +  K          P+ R          R  +N   
Sbjct: 768 ETAEFARTHGYVLTPFGRRCYVPGITEKN---------PARRGYA------ERQAINAPL 812

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--IVLTVHDEIVCETP- 637
                             Q  + DI+   M+        AG D  ++L VHDE+V E P 
Sbjct: 813 ------------------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHDELVFEAPK 854

Query: 638 DTDEFNASMLYHLM 651
           D  E  A +   +M
Sbjct: 855 DQAEATAKLACAVM 868


>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
 gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
          Length = 876

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 97/656 (14%), Positives = 202/656 (30%), Gaps = 139/656 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLD 87
            ++  A   ++     +    D  +    L + L++        ++   R V+   +  +
Sbjct: 331 DILGLAIAHNNG---CYYIPTDEALRSEALIQWLKDERKEKWLFDAK--RAVVALGW-KN 384

Query: 88  IPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           I +      L +A     PS +   V +  K   +      E +  + KG       ++ 
Sbjct: 385 IELAGSTFDLQMASYLLDPSTSFHEVSDVTKHHRKGHVHEDEAV--YGKGAKRRIPDEKE 442

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
              H           K  V    +  ++L   +  E  L  +   +   G  VDV     
Sbjct: 443 LGEHLARKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVKVDVEQLEQ 502

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VL 263
           + + ++    +L+Q +  L  G+  +    ++L   LF +  L +   T+T       VL
Sbjct: 503 MGEDLNARLEELEQTIHELA-GVSFNINSPKQLGEILFEKLQLPVIKKTKTGYSTSADVL 561

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                       + + R    +     ++ L++ ++                        
Sbjct: 562 EKLAGQHEIIDHILHYRQL-GKLNSTYIDGLLKVVHKG---------------------- 598

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLV 377
                     + H   +Q +T      ++DP+   I         +R   + SE    ++
Sbjct: 599 --------TGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVPSEKDWFIL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA  A ++  ++AF    D++  T    F+V+  +VT + R   K +  
Sbjct: 651 AADYSQIELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAVNF 710

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y        +     G+     A  ++   A   +   + +   + +   E      
Sbjct: 711 GIVYGISDYGLSQ---NLGITRKEAATFIERYFAS--YPKVKEYLDHVIDEAREKGYV-- 763

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                                    + ++RR +P +  +     
Sbjct: 764 ---------------------------------------TTLLKRRRYLPDLTSRNFNQ- 783

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   RS         R+ +NT                   +Q  + DI+ + M+  
Sbjct: 784 --------RSFA------ERTAMNTP------------------IQGTAADIIKQAMVQM 811

Query: 618 ------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                       ++L VHDE++ E P  +      L   +M         +PLK +
Sbjct: 812 ASRMDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQAVE--LRVPLKVD 865


>gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48]
 gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48]
          Length = 953

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 82/535 (15%), Positives = 171/535 (31%), Gaps = 68/535 (12%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            LK  LE+  V  V  N  ++ +V        I +  +  T++++               
Sbjct: 421 ELKPLLEDPTVLKVGQNIKYDLSVFARY---GIRVAPYDDTMLISYVL-----------E 466

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW---RLFGEYCKGDVTVTREIF 172
             L    M+E  EL          + +    K      +   +   EY   D  +T  ++
Sbjct: 467 GGLHGHGMDELSEL-HLGHTPIPFKQVAGTGKSAKSFKFVDLKPATEYAAEDADITLRLW 525

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             L+P  ++          E+ +  +   +   G  +D  +   L+Q   V   +++ E 
Sbjct: 526 HVLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQVLRLLSQDFGVRMGEIETEA 585

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRM 281
            ++  G   +    ++L    F E  L     T T      +   +++  +       R+
Sbjct: 586 HTVA-GHPFNLNSPQQLGAIFFDEMALPGGKKTATGQWATDVKVLEEIAEKGTHDQGQRL 644

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                  R  L +   ++              P+  R H     
Sbjct: 645 ----------------------ARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQL 682

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      +++P+   I         +R+  +A  G KL+ AD + IE R+LA +    
Sbjct: 683 ASTTTGRLSSNEPNLQNIPIRTLEGRKIRTAFVARAGHKLISADYSQIELRLLAHIGDIG 742

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              KAF+ G D++  T +  F V    +  + R   K +   + Y   A     + +  G
Sbjct: 743 QLKKAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF---GLGNQLG 799

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +KT      + +     +   +   E      ++ T   R +      H++
Sbjct: 800 IDNQEAGRYIKT------YFERFPGIKAYMDAAKEQVKATGYVETIFGR-RIHIPDIHAK 852

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVY 570
            +       +A       G A    +R  + +    +       ++L     L++
Sbjct: 853 SAGQRAFAERAAINAPIQGTAADIIRRAMIRMPGALEAAGLTTTMLLQVHDELIF 907


>gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 893

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 111/663 (16%), Positives = 207/663 (31%), Gaps = 141/663 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           +  F   +  V  +      ++  + LK  +EN  +     N   +  + K    L + +
Sbjct: 347 MIGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQLVLFKR---LGLAL 403

Query: 91  HRWICTLVLARSNGLPSALKAVGEALK------LSSQKMEEGKELIARFCKGETHECLYD 144
                  +L        A   V   L       L+  +   GK   A+F        L  
Sbjct: 404 KGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKG--AKFTVPTDTNLLLS 461

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
            +  +  +      +          +  ++    +  E  L ++   +  +G  V+    
Sbjct: 462 -HVAHKADGLFKLEKPA----FTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYL 516

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
               +    ER    Q    +  G   +    ++L   LF + GL +   T+T     + 
Sbjct: 517 RNKGK-DLSERIADIQSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVD 575

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             +KL PQA  V                               LQ+   ++         
Sbjct: 576 VLEKLAPQAPIVD----------------------------HILQYRQLAKLKSTYIDGL 607

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVV 378
                P+ S+ H    Q +T      + DP+   I         +R+  + S    ++  
Sbjct: 608 LSVIYPKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFG 667

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMEL 437
           AD + IE RVLA + G++   KAF  GED++  T    F +A   V    +R   K +  
Sbjct: 668 ADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNF 727

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y         +A+  G++       + T      +++      WM       A E  
Sbjct: 728 GIVYGISDY---GLANNLGISRAEAKRFIDT-----YFQEFPQIHEWM-NTIKTFAHEHG 778

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
           ++ T                                     IA +RR +P +  K     
Sbjct: 779 YVET-------------------------------------IAHRRRYLPDIQAKNF--- 798

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                 + RS         R+ +N+                   +Q  + DI+   M+  
Sbjct: 799 ------NLRSFA------ERTAMNSP------------------IQGSAADIIKIAMIKV 828

Query: 618 TKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670
            +A         ++L VHDE++ ETP  +    + +   +M S    A  +PLK + +  
Sbjct: 829 NEALRENNLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHG 886

Query: 671 KRY 673
             +
Sbjct: 887 DTW 889


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 106/640 (16%), Positives = 195/640 (30%), Gaps = 140/640 (21%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           WD   +      L E L +        +   +   L      D  I      + LA    
Sbjct: 354 WDVAKEWK---ALCEWLADPAKEKWVFDGKRDTVGLAWH---DFAIKGISFDVYLASYLL 407

Query: 105 LPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
             +     L ++      +    +E  E+  +  K    E         H+ A       
Sbjct: 408 NAAESNPTLDSIAAQYAQTRVLSDE--EVYGKGAKRLVPEMDVLSEHVAHKAAAIWQSVP 465

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              +     E+ K L  L   E  L  +   +  +G  V+      + + +D +   L  
Sbjct: 466 VLREQLAENEMEKLLGEL---EAPLSMVLALMEKQGVKVNSERLVQMGEDLDKKLAGLTD 522

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           ++  L  G   +    ++L   LF    L +   T+T         +KL P         
Sbjct: 523 QIYELAGG-AFNINSPKQLGEILFDRLSLPVLKKTKTGPSTSADVLEKLAP--------- 572

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                      + +++A+         L F    +           +   + S+ H   +
Sbjct: 573 ----------YHPIIDAI---------LTFRQLGKLRSTYIEGLTKEIHTKTSKVHTLYN 613

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q  T      ++DP+   I         +R   I SE G  ++ AD + IE R+LA ++ 
Sbjct: 614 QATTATGRLSSTDPNLQNIPIRMEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQ 673

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+ G D++  T    F V+  +VT   R   K +   + Y        +    
Sbjct: 674 DENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAVNFGIVYGISDYGLSQ---N 730

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        ++       ++      RWM E   + A  D  + T   R         
Sbjct: 731 LNITRKEAGDFIE-----RYFDVFSGVKRWMDE-IVQQAKADGHVTTLLNR--------- 775

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DV 573
                                                          LP  RS  +    
Sbjct: 776 --------------------------------------------RRYLPDIRSSNFNLRS 791

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
              R+ +NT                   +Q  + D++   M+   +A         ++L 
Sbjct: 792 FAERTAMNTP------------------IQGTAADVIKLAMIRMQEALEEKGLASRMLLQ 833

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E PD + E    ++  +M S  + +  +PLK +
Sbjct: 834 VHDELVFEVPDNELEVMRKLVPEVMES--ALSLDVPLKVD 871


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 99/636 (15%), Positives = 201/636 (31%), Gaps = 142/636 (22%)

Query: 56  VLKEALENTDVTIVAHNSY-----FE--RTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106
             +EAL +      A +       F+  RTV+   +   I +      + +A     P  
Sbjct: 349 EAEEALTSDVFKKWAEDDQKEIYTFDAKRTVVALGWA-GIDLSNTTFDIQMASYLIDPAS 407

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            + +    A + +  +++  + +     KG+            H           K ++ 
Sbjct: 408 GSHEIADIANRKNGIQVQTDEAVYG---KGKKQAIPEAEELSQHLGRKAAAILDLKKNLE 464

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                 ++ E     E  L  +   +   G  VD     T+ + +     KL+Q++    
Sbjct: 465 QELRDNRQWELFQDLEMPLSVILGRMEANGVSVDQQELETIGKDLTERLAKLEQQIYE-A 523

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF + GL +   T+T       VL   K        +   R   
Sbjct: 524 AGQSFNINSPKQLGKVLFEDLGLPVLKKTKTGYSTSADVLEKLKGEHDVIDHILFYRQL- 582

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L++ ++                              P+  + H   +Q +
Sbjct: 583 GKLNSTYIEGLLKVIH------------------------------PKTGKIHTIFNQAV 612

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
           T      +++P+   I         +R   + S  G KL  AD + IE RVLA ++ ++ 
Sbjct: 613 TQTGRLSSTEPNLQNIPVRLEEGRKIRRAFVPSKPGSKLFAADYSQIELRVLAHISKDEN 672

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF+ G D++  T +  F V   +VT + R   K +   + Y        +     G+
Sbjct: 673 LISAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAVNFGIVYGISDYGLSQ---NLGI 729

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       +       ++ ++    +   E+    A E  ++ T  +             
Sbjct: 730 SRKKAQTFID------KYFESYPGVKTYMEDIVAEAREQGYVTTMLQ------------- 770

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                   +RR +P +  +             RS         R
Sbjct: 771 ------------------------RRRYLPDLTSRNFNQ---------RSFA------ER 791

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDE 631
           + +NT                   +Q  + DI+ + M++             ++L VHDE
Sbjct: 792 TAMNTP------------------IQGSAADIIKKAMVDMATELERQNLKSVMLLQVHDE 833

Query: 632 IVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
           ++ E P+ +      L   +M S       +PL  +
Sbjct: 834 LIFEVPEDEIETMEKLVKDVMESTIE--LNVPLITD 867


>gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
 gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
          Length = 1025

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 102/647 (15%), Positives = 191/647 (29%), Gaps = 142/647 (21%)

Query: 47   CVHDPVMPQVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
               D + P+   +AL    E+  V  V     F   +L       + +       +++ +
Sbjct: 485  LAPDQIGPRDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYA 541

Query: 103  NGLP---SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    AL A+ E+ L  +   + E          G     +        +       
Sbjct: 542  LDAGRGSHALDALSESNLGHTLHTLTELT--------GTGKNKIG-----FDQVPVDRAT 588

Query: 159  EYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLN 208
             Y      V+  + + L+P              E+ L  +   +  RG  +D  +   L+
Sbjct: 589  AYAAERADVSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLS 648

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
                    +++ E+  L  G   +    ++L   LF + GL     T+T      +    
Sbjct: 649  ADFAQTAARIEAEIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLD 707

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +    F                           R  L +   S+         P   
Sbjct: 708  ELAEQGHEFP--------------------------RKILDWRQVSKLRSTYTDALPNYV 741

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383
             P+  R H       T      +++P+   I         +R   +A+ G KLV AD + 
Sbjct: 742  HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQ 801

Query: 384  IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            IE R+L+ +A      KAF+ G D++  T +  F V    +  + R   K +   + Y  
Sbjct: 802  IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 861

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             A     +A+   +        +K     E +     +    ++    H           
Sbjct: 862  SAF---GLANQLSIPREEAGAYIK--RYFERFPGIRAYMDETRDFCRNHGYV-------- 908

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                                               +  ++   P +             P
Sbjct: 909  ---------------------------------TTLFGRKCHYPDIKASN---------P 926

Query: 564  SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
            S R+   R   N R                 G   + I +A+ R    E  +   K    
Sbjct: 927  SIRAFNERAAINARL---------------QGSAADIIRRAMVR---MEDALAEKKLSAQ 968

Query: 624  IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            ++L VHDE++ E P+ + E    ++  +M   P  A    +PL+ + 
Sbjct: 969  MLLQVHDELIFEVPEAEVEATLPVVRAVMQDAPFPAVILNVPLQVDA 1015


>gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056]
          Length = 880

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 116/666 (17%), Positives = 215/666 (32%), Gaps = 161/666 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G D   + +   D +  P+  + L +    T     A        VL + + +
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRA-------KVLLSHYGI 388

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145
           ++P         LA+          +    +L  Q  +    E+  +  K         R
Sbjct: 389 ELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK---------R 437

Query: 146 NKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
             P   + +       +  +              +L+ L   EQ L ++   +   G  V
Sbjct: 438 ALPEQEQLFEHLARKVQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAGIKV 497

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET 257
           +      +    +     L QE+  L  G   +    ++L T LF + GL LE    T+T
Sbjct: 498 ERETLQGMQAENEKTLESLTQEIYDLA-GQKFNINSPKQLGTILFEDMGLPLEYTKKTKT 556

Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
                  VL     + P   ++   R   S+     +  L EA+ +DG+           
Sbjct: 557 GYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK----------- 604

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
                                H    Q +T      + DP+   I         +R   +
Sbjct: 605 --------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV 644

Query: 370 ASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKD 427
                  L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT +
Sbjct: 645 PEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKSEDVTPN 704

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y         +A+  G++       ++T    E +   +N+   +  
Sbjct: 705 DRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYMETIVR 759

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                                                 +A+ +TI         +RR +P
Sbjct: 760 EAR----------------------------------DKAYVETI-------YHRRRSLP 778

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
            +              + R+   R+    R+ +N+                   +Q  + 
Sbjct: 779 DI--------------NSRNFNIRNF-AERTAINSP------------------IQGSAA 805

Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660
           DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    A  
Sbjct: 806 DILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA-- 863

Query: 661 LPLKAE 666
           +PL A+
Sbjct: 864 VPLVAD 869


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 105/633 (16%), Positives = 191/633 (30%), Gaps = 138/633 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  +A N+ ++  VL        PI   +    +  +      +  + E L
Sbjct: 447 LKPLLEDPAVLKIAQNAKYDIAVLARYGINVGPIEDTMLISYVLEAGLHGHGMDELSE-L 505

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L   K    K++     KG+                      Y   D  VT  ++  L+
Sbjct: 506 WLG-HKPISFKQVAGSG-KGQIS---------FKHVGLAEATAYAAEDADVTLRLYNVLK 554

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P  ++E          + L  +   + + G  VD      L+    +     +   + L 
Sbjct: 555 PRLAREGLLTVYETLERPLPAVLAAMENDGIRVDPDTLRRLSNEFSMRMADFEARAQEL- 613

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    +++   LF E  L     T T    T   VL +      +  +V  +  +
Sbjct: 614 VGRPFNLGSPKQIGDVLFGEMALKGGKKTATGQWSTDSDVLEALALEH-ELPRVLLDWRQ 672

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            S+        L+ A+   G                              +R H      
Sbjct: 673 LSKLKGTYTENLIAAIAPGG-----------------------------GNRVHTSYALA 703

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            T      +SDP+   I         +R   +A+ GK L+ AD + IE R+LA +     
Sbjct: 704 ATTTGRLSSSDPNLQNIPIRTEEGRKIRKAFVAAPGKVLISADYSQIELRLLAHIGDIPQ 763

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             KAF+ G D++  T +  FNV    +  + R   K +   + Y   A     +A+   +
Sbjct: 764 LKKAFQEGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINFGIVYGISAF---GLANQLSI 820

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                   +                                         K + ++   +
Sbjct: 821 PQGEAGAYI-----------------------------------------KTYFERFPGI 839

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                       Q          R+   V  ++              GR +   D+G   
Sbjct: 840 ------------QAYMEATKAFVREHGYVTTIF--------------GRKINIPDIGGKS 873

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                   +        G   + + +A+ R     G + A      ++L VHDE+V E P
Sbjct: 874 VAHRQFAERAAINAPIQGAAADVMRRAMVR---MPGALKAAGLSSRMLLQVHDELVFEAP 930

Query: 638 DTD-EFNASMLYHLM--TSNPSWAKGLPLKAEG 667
           + + +    +   +M   + P+    +PL  E 
Sbjct: 931 EAEAQATIDVAREVMQGAAAPAVTISVPLTVEA 963


>gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255]
 gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255]
          Length = 1010

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 103/633 (16%), Positives = 188/633 (29%), Gaps = 134/633 (21%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
            ++LK  LE+     +  N  F   +L       I +       +++ +      +     
Sbjct: 482  ELLKPILESRGHLKIGLNVKFSAVLLAQH---GIVMQNHDDIELISYALDAGRGSHDLAS 538

Query: 114  EALKLSSQKMEEGKELIARFCKGETHECLYDRN-KPNHREAWRLFGEYCKGDVTVTREIF 172
             A           K  +              RN     + A      Y      +T  ++
Sbjct: 539  LA-----------KRWLGHATVSHGELTGSGRNRLAFDQVAIDRATAYAAEYADMTLRLW 587

Query: 173  KRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            + L+P    E+           +      +  RG  +D  +   L+        +L+ E+
Sbjct: 588  QVLKPRLVAERMNTVYETLERPMIATLAQMERRGITIDRQVLSRLSGEFAQSAARLEAEI 647

Query: 223  ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
            + L  G   +    +++   +F + GL     T+T      +       +    F     
Sbjct: 648  QQLA-GEPINVGSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDELAEQGHDFP---- 702

Query: 283  ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                  R  L +   S+         P    P+  R H      
Sbjct: 703  ----------------------RKILDWRQVSKLKSTYTDALPEYVHPQTRRVHTTYALA 740

Query: 343  ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
             T      +++P+   I         +R   IA+ G KLV AD + IE R+LA +A    
Sbjct: 741  ATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADIPV 800

Query: 398  KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              +AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+  G+
Sbjct: 801  LKQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAF---GLANQLGI 857

Query: 458  NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                 A  +K      ++ +     R   +   E   E  ++ T   R       K    
Sbjct: 858  PREEAAAYIK------KYFERFPGIRAYMDATREFCREHGYVTTLFGRKCHYPDIKSPN- 910

Query: 518  SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                                         PS R+   R   N R
Sbjct: 911  ---------------------------------------------PSHRAFNERAAINAR 925

Query: 578  SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                             G   + I +A++R    +  + A      ++L VHDE++ E P
Sbjct: 926  L---------------QGSAADIIRRAMAR---MDDALAARNLSARMLLQVHDELIFEVP 967

Query: 638  DTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            D +      ++ H+M   P  A    +PL+ + 
Sbjct: 968  DDEVAATLPVVQHVMQDAPFPAVLLSVPLQVDA 1000


>gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
 gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
          Length = 1025

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/647 (15%), Positives = 191/647 (29%), Gaps = 142/647 (21%)

Query: 47   CVHDPVMPQVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
               D + P+   +AL    E+  V  V     F   +L       + +       +++ +
Sbjct: 485  LAPDQIGPRDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYA 541

Query: 103  NGLP---SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    AL A+ E+ L  +   + E          G     +        +       
Sbjct: 542  LDAGRGSHALDALSESNLGHTLHTLTELT--------GTGKNKIG-----FDQVPVDRAT 588

Query: 159  EYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLN 208
             Y      V+  + + L+P              E+ L  +   +  RG  +D  +   L+
Sbjct: 589  AYAAERADVSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLS 648

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
                    +++ E+  L  G   +    ++L   LF + GL     T+T      +    
Sbjct: 649  ADFAQTAARIEAEIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLD 707

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +    F                           R  L +   S+         P   
Sbjct: 708  ELAEQGHEFP--------------------------RKILDWRQVSKLRSTYTDALPNYV 741

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383
             P+  R H       T      +++P+   I         +R   +A+ G KLV AD + 
Sbjct: 742  HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQ 801

Query: 384  IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            IE R+L+ +A      KAF+ G D++  T +  F V    +  + R   K +   + Y  
Sbjct: 802  IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 861

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             A     +A+   +        +K     E +     +    ++    H           
Sbjct: 862  SAF---GLANQLSIPREEAGAYIK--RYFERFPGIRAYMDETRDFCRTHGYV-------- 908

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                                               +  ++   P +             P
Sbjct: 909  ---------------------------------TTLFGRKCHYPDIKASN---------P 926

Query: 564  SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
            S R+   R   N R                 G   + I +A+ R    E  +   K    
Sbjct: 927  SIRAFNERAAINARL---------------QGSAADIIRRAMVR---MEDALAEKKLSAQ 968

Query: 624  IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
            ++L VHDE++ E P+ + E    ++  +M   P  A    +PL+ + 
Sbjct: 969  MLLQVHDELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDA 1015


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 146/432 (33%), Gaps = 64/432 (14%)

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHT 206
            E       +   + + L      E++L +L              +   G  +DVA    
Sbjct: 398 TEDAAQRALLAERLQQNLLERLEGEEKLLWLYREVEKPLSRVLAHMEATGVRLDVAYLKA 457

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261
           L+  V+ E  +L++E+  L  G   +    ++L+  LF E  L     T+ T +R     
Sbjct: 458 LSLEVEAELKRLEEEVYRLA-GHPFNLNSRDQLERVLFDELKLPALGKTQKTGKRSTSAA 516

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL + ++  P   ++  +R                                 S+      
Sbjct: 517 VLEALREAHPIVEKILQHREL-------------------------------SKLKSTYI 545

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376
              P    PR  R H   +Q  T      +SDP+   I     +   +R   +A EG  L
Sbjct: 546 DPLPGLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGFLL 605

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V  D + IE RVLA ++G++  ++ F  G+D++  T +  F V    V    R   K + 
Sbjct: 606 VALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAAKTVN 665

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A    +++    +        +      E +  +    R   E   E   + 
Sbjct: 666 FGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYFQSFPKVRAWIEKTLEGGRQR 716

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R ++     ++RV  +     +        G A    K   V L    K+  
Sbjct: 717 GYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLKETG 775

Query: 557 NLILMLPSGRSL 568
              ++L     L
Sbjct: 776 A-RMLLQVHDEL 786



 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604
                K +  +   L  GR   Y +   G  R   +   R +  RE           VQ 
Sbjct: 696 FQSFPKVRAWIEKTLEGGRQRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 754

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAK 659
            + D++   M        + G  ++L VHDE++ E P D  E  A++   +M      A 
Sbjct: 755 TAADLMKLAMVKLFPRLKETGARMLLQVHDELLLEAPKDRAEAVAALAKEVMEGVYPLA- 813

Query: 660 GLPLKAE 666
            +PL+ E
Sbjct: 814 -VPLEVE 819


>gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470]
 gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470]
          Length = 858

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/505 (18%), Positives = 154/505 (30%), Gaps = 131/505 (25%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +   +   G   D      +   + V+  KL   +     G   +    ++
Sbjct: 457 EKIENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQERKLLSLIYE-AAGEEFNVNSPKQ 515

Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L   LF + G+     T+   +T   VL    K  P    +                   
Sbjct: 516 LGVILFEKMGMPAGKKTKNGYSTAADVLEMLAKSYPFVKDILE----------------- 558

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                         +   S+         P    P   R H   +Q +T      +SDP+
Sbjct: 559 --------------YRTISKLISTYLEALPLLIRPETGRIHTSFNQTVTATGRLSSSDPN 604

Query: 356 PLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +RS  +   G    + +D + +E RVLA M+G++  ++AF   ED++
Sbjct: 605 LQNIPVRTAEGRQIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIH 664

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A    +   +VT +QR+  K +   + Y         +A+  G++       +K  
Sbjct: 665 RRTAAEVLGIPFEEVTSEQRSHAKAVNFGIIYGISDF---GLANQLGISRGEAGTYIK-- 719

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              E +     F + M     E A E     T   R                        
Sbjct: 720 KYFERYPYIHAFMKSMV----EDAQESGRAKTLFGR------------------------ 751

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLT 588
                                           LP  RS  + R     R+ +NT      
Sbjct: 752 -----------------------------YRELPDIRSSNFNRRSFAERTAMNTP----- 777

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY--DIVLTVHDEIVCETPDTDEF 642
                        +Q  + DI+   M+  ++     GY   ++L VHDE+V E    ++ 
Sbjct: 778 -------------IQGTAADIMKLAMIEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKE 824

Query: 643 NAS-MLYHLMTSNPSWAKGLPLKAE 666
           N   +L   M S       +PL A+
Sbjct: 825 NLKTLLKETMESVVE--LKVPLIAD 847


>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
 gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
          Length = 936

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 161/481 (33%), Gaps = 76/481 (15%)

Query: 49  HDPVMP-QVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARS 102
               +P   +  AL     + ++   AHN+ F+  VL     + I +      T++ A  
Sbjct: 396 EGEQLPLADVVAALGPLFADPNIPKFAHNAKFDAEVLA---GVGIQVAGLAFDTMIAAAM 452

Query: 103 NGLPSALKAVGEA-LKLSSQKMEEGKELIARFCKG--------ETHECLYDRNKPNHREA 153
            G    LK +    LKL        ++LI R  K         E        +  +    
Sbjct: 453 LGKRQGLKDLAFYELKLPEPP-TTIEDLIGRGSKQISFAAVPIEQAAPYAAADALHTLLL 511

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                     D    R+++ R+      E  L  +   +   G  +D      L +    
Sbjct: 512 TETLRGQLTTDT-ALRDLYYRV------ELPLIDVLTDMELTGILLDHEYLRELGKRFAQ 564

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--------HLEDLTETTCQRVLSS 265
              +L +++ +   G   +    ++L   LF   G+         L+    +    VL  
Sbjct: 565 RIAELTEQIYAKAGG-PFNINSGQQLNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEE 623

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             +L P A  +   R                                 ++         P
Sbjct: 624 LSQLYPIAADILAYRQL-------------------------------TKLKSTYIDALP 652

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
               PR  R H   +QI        +++P+   I         +R   +A+ G + V AD
Sbjct: 653 QLVNPRTGRIHTSYNQIGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAAPGHRFVAAD 712

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA ++G++  + AF+ G D++  T +R F VAP QV K+QR + K +   + 
Sbjct: 713 YSQIELRVLAHISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVI 772

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y   A     +A   G+  +    L+   +  E++     +         +H       G
Sbjct: 773 YGISAF---GLAQRLGIERDLARQLID--NLFEQFPGIRRYIDQTLAFGRQHGYVQTLFG 827

Query: 501 T 501
            
Sbjct: 828 R 828



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 598 TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HL 650
               +Q  + DI+   M+   +A         ++L VHDE++ E P+ +   A+ L   +
Sbjct: 850 INAPIQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAEAPEEEVPAAAHLLREV 909

Query: 651 MTSN 654
           M++ 
Sbjct: 910 MSNT 913


>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
          Length = 891

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/630 (15%), Positives = 199/630 (31%), Gaps = 137/630 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK-AVG 113
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFC 426

Query: 114 EALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              K+     ++  +E+  +  K    E         H           K       +  
Sbjct: 427 TVAKMKETHAVKSDEEVYGKGAKRAVPELKVV---AEHVARKVHVLYDVKQTFVEELKKN 483

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  L  G   +
Sbjct: 484 EQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLA-GTEFN 542

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL            + + R    +    
Sbjct: 543 INSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQL-GKLNST 601

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ ++ D                               S+ H   +Q++T     
Sbjct: 602 YIEGLLKVVHED------------------------------SSKIHTRFNQVLTQTGRL 631

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            ++DP+   I         +R   + SE G  +  AD + IE RVLA +A ++  ++AF+
Sbjct: 632 SSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQ 691

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F V   +VT + R   K +   + Y        +     G+     A
Sbjct: 692 HDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKAAA 748

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +      E++ ++    +   E+  + A +  ++ T   R     R+    ++     
Sbjct: 749 EFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIPEITS---- 793

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                                                     R+   R     R+ +NT 
Sbjct: 794 ------------------------------------------RNFNLRSF-AERTAMNTP 810

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M+       + G    ++L VHDE++ E P
Sbjct: 811 ------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAP 852

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
             +      L   +M      A  +PLK +
Sbjct: 853 KEEIEKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2]
 gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 884

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/637 (16%), Positives = 199/637 (31%), Gaps = 140/637 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAV 112
           ++E L + +     H+ +  RT L   ++  I        + LA     P      L  +
Sbjct: 365 IREWLADPERKKRGHDLH--RTDLALHWH-GIEFAGAEFDVQLAGYLLDPTDANQTLSGL 421

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHEC-LYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                LSS + ++  E+  +  K +  E  +   +               + ++  T E+
Sbjct: 422 AAKYGLSSIRPDD--EVFGKGAKYKVPEMDVLSDHVARKAAVIEALVPVQQAELEKT-EM 478

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            K    L   E  L  +   +  +G  V+V     L +  + +   L  E+ S+  G+  
Sbjct: 479 HKLFHEL---EMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSIA-GVEF 534

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L   LF + GL +   T+T         +KL P                    
Sbjct: 535 NLNSPKQLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPY------------------- 575

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                       ++  LQ+   ++           +   +  + H    Q +       +
Sbjct: 576 ---------HDIVQNILQYRTIAKLQSTYVEGLLKEISEKTGKVHTYFRQTVAATGRLSS 626

Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             P+   I         +R   + SE G  ++ AD + IE RVLA ++ ++   +AF   
Sbjct: 627 QFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHD 686

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T +  F V    V  D R   K +   + Y        +      +     A  
Sbjct: 687 MDIHTKTASDVFGVPAEAVDSDMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAARF 743

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +       ++ D     R   ++  + A  D ++                          
Sbjct: 744 ID------QYFDVFQGVRRYMDDIVKDAKRDGYV-------------------------- 771

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTT 584
                     K ++ R+R                  LP   +  +       R+ +NT  
Sbjct: 772 ----------KTLLERRRY-----------------LPEINASNFNQRSFAERTAMNTP- 803

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPD 638
                            +Q  + DI+   M+    A         ++L VHDE+V E P 
Sbjct: 804 -----------------IQGTAADIIKLAMVQMDAALRERNLRSRMLLQVHDELVFEVPP 846

Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
            +      L    M +    A  +PLKAE  Y S  Y
Sbjct: 847 EEMETMKELVPATMEAALKLA--VPLKAEVSYGSNWY 881


>gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
 gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
          Length = 930

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 116/649 (17%), Positives = 197/649 (30%), Gaps = 155/649 (23%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSN-GL 105
                +P+ L+  L +  V IVAH    +   L      LD P+   +   +LA    G 
Sbjct: 394 AQWSALPEALRALLADPAVEIVAH----DVKSLARLLRTLDAPLAGVLGDTMLAAYLLGQ 449

Query: 106 PSALK-------AVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDRNKPNHREAWRLF 157
              L+       AVG  L      +  G+  I                       +W   
Sbjct: 450 EGKLEVEDVAGAAVGAELPTRKSLLGSGRSKIGFEAVDISAAAMRAGGAAAAVLASWPRL 509

Query: 158 GE---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           GE   +  GD        ++L      E  L  L   I + G  +DV     L   +  +
Sbjct: 510 GEQLEHAGGD-----GALRKLH--DELELPLALLLAEIEEHGITLDVPYLRALADELGGQ 562

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKK 268
              +++++  L  G   +    ++L   LF + GL  + +  T      T   +L S  +
Sbjct: 563 LAGIERQVYELA-GEEFNLGSPKQLGHMLFEKLGLRADKMRRTKTGSYSTNHEILESMAE 621

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                  +  +R                                  +         PP  
Sbjct: 622 SHAIIPPIIEHRELL-------------------------------KLKGTYLDALPPLV 650

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAG 383
            P   R H   +Q +       + DP+   I     I   +R   +A+ GK LV  D + 
Sbjct: 651 NPHTGRIHTSFNQAVAATGRLSSQDPNLQNIPIRKDIGRRIRRAFVAAPGKTLVSIDYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RV+A ++G++  ++AF+   D++  T A  F++   ++  D+R + K +   L Y  
Sbjct: 711 IELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDERRVAKAVNYGLMYGQ 770

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                  +A + G++    AH                                       
Sbjct: 771 SEF---GLAQSLGISRAQAAHY-------------------------------------- 789

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                   +   R S +   + Q        G A+                         
Sbjct: 790 ------MERYFERFSTVRAYMDQVVADARAEGAAVTL----------------------- 820

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
               L  R    +    N   R+               VQ  + DI+   M+        
Sbjct: 821 ----LGRRRPIPDLDARNQQRRRAAERVA-----QNTPVQGSAADIIKLAMLRVAAHLAR 871

Query: 624 ------IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
                 ++LTVHDE+V E  P+  E  A  +   M    ++A  +PL A
Sbjct: 872 GEWDASMLLTVHDELVFEVVPEQAETFAKAMIAEMEG--AYALDVPLVA 918


>gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 201/630 (31%), Gaps = 137/630 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPS-ALKAV 112
           +V KE +EN D      +S   R V+      +++         +LA     P  +   V
Sbjct: 359 EVFKEWVENDDQKKWVFDSK--RAVVALRWQGIEL--KGAEFDTLLAAYIINPGNSYDDV 414

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               K     +    E +  + KG       +     H     L  +  +  +    E  
Sbjct: 415 ASVAKDYGLHIVSSDESV--YGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENN 472

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +LE     E  L  +   +   G  VDV     + + +  +  + ++++  +  G   +
Sbjct: 473 DQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIA-GEPFN 531

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF + GL +   T+T       VL            +   R         
Sbjct: 532 INSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQ-------- 583

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                       G+L+ T    G  +  R           P   + H   +Q +T     
Sbjct: 584 -----------IGKLQSTYI-EGLLKVTR-----------PDSHKVHTRFNQALTQTGRL 620

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            ++DP+   I         +R   + SE    +  AD + IE RVLA ++ ++  ++AF 
Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+VA  +VT   R   K +   + Y        +     G+      
Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAG 737

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +        + ++    +   E+  + A +  ++ T                      
Sbjct: 738 AFID------RYLESFQGVKAYMEDSVQEAKQKGYVTT---------------------- 769

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                          +  +RR +P +  +           + RS         R+ +NT 
Sbjct: 770 ---------------LMHRRRYIPELTSRNF---------NIRSFA------ERTAMNTP 799

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++             ++L VHDE++ E P
Sbjct: 800 ------------------IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAP 841

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             + E    ++  +M    + A  +PLK +
Sbjct: 842 KEEIEILEKLVPEVMEH--ALALDVPLKVD 869


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/668 (15%), Positives = 206/668 (30%), Gaps = 153/668 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-----LKEALENTDVTI 68
           ID    G+  + +   +I  +F    +     D      + +      + + LE  D+ +
Sbjct: 354 IDFETTGLDTFKD--TIIGISFAIKSNEAFYLDLSGRTKIGKDKCMNLVFDTLEKEDIKV 411

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + HN  +E  ++KA   +   I       ++A     P+               M++   
Sbjct: 412 IGHNLKYEYKMMKA---IGKSIGNMYFDTMVAAYLINPTR----------GRYNMDDLA- 457

Query: 129 LIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----- 181
            IA              N  K       +   EY   D  VT   ++   PL        
Sbjct: 458 -IAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEE 516

Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   +   G  +       L+        K  +++ +   G   + +  
Sbjct: 517 LFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEA-GEEFNLQSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+  LF + G+     T+T          +L                S   K+     
Sbjct: 576 KQLEYILFDKMGIPPTKKTKTGFSTDEEVLTEL----------------SQKYKIAEY-- 617

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      L +   ++       VFP     +  R H   +Q +T      +S+P+ 
Sbjct: 618 ----------MLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNL 667

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R+  I  +G  L+ AD + IE R+LA  + +   ++AF+  +D++  
Sbjct: 668 QNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRK 727

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  + ++V+   VT   R I K++  ++ Y   A     ++   G+              
Sbjct: 728 TAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAF---GLSKELGIKKK----------- 773

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +AE+F +     +         +   C+ V +  R                    
Sbjct: 774 -----EAEDFIKGYSSTYSR-------VKPFCDEVVEEVRN------------------- 802

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                  K  +  M    R L      +N    N   R      
Sbjct: 803 -----------------------KGFVRTMCGRIRDLSKTINSSNAMARNEAERM----- 834

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                    ++Q  + D++   M+   K          IV+ VHDE+V E  + +   A 
Sbjct: 835 -----ALNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAM 889

Query: 645 SMLYHLMT 652
           +++  +M 
Sbjct: 890 TIMKEIME 897


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/653 (14%), Positives = 176/653 (26%), Gaps = 155/653 (23%)

Query: 46  DCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D + +  MP       LK   E++ +  +  N  ++  +        +PI   +      
Sbjct: 395 DALAEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARYGVNVVPIDDTMLMSY-- 452

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
             +G          + +  S      K L+       T + +                 Y
Sbjct: 453 AMHGGKHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKV----------PIDEATAY 502

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++K  +P   +          E+ L  +   +   G  VD  +   ++  
Sbjct: 503 AAEDADITLRLWKLFKPQLHQVQVTTVYETLERPLVPVLAEMEMNGIKVDRDVLSRMSNA 562

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
              +   L+ E+  L  G   +     +L   LF + GL      +    +T   +L   
Sbjct: 563 FAQKMAGLEAEIHELA-GENFNVGSPAQLGEILFDKMGLEGGKKGKTGKYSTGADILEDL 621

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   +V + R                                 S+           
Sbjct: 622 ATEHELPRRVLDWRQL-------------------------------SKLKSTYTDALQT 650

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
              P   R H        +     ++DP+   I         +R   IA  G  LV  D 
Sbjct: 651 HINPDTGRVHTSYSITGANTGRLASTDPNLQNIPVRTEEGRRIRGAFIAEPGNVLVSLDY 710

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +A      +AF  G D++  T +  F+V   ++T + R   K +   + Y
Sbjct: 711 SQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                   +                          +A+ F     E  P           
Sbjct: 771 GISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP----------- 800

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                    R+               + QT+   K                       + 
Sbjct: 801 -------GIRRYMDDTVAF--AKEHGYVQTLFGRK-----------------------IH 828

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
            P   +       + R+ +N                    +Q  + D++   M+    A 
Sbjct: 829 TPEINAKGPHAGFSRRAAINAP------------------IQGTAADVIRRAMVRMPGAI 870

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667
                 ++L VHDE++ E  +        +   +M      A    + L A+ 
Sbjct: 871 NGLPAKMLLQVHDELLFEVAEGAVDETIGIARDVMEGAADPAVKLDIKLVADA 923


>gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
          Length = 898

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/649 (16%), Positives = 206/649 (31%), Gaps = 157/649 (24%)

Query: 50  DPVMPQ-----VLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVL--AR 101
              +P+      LKE  +N ++  + HN   F   +LK    L+      +    L  + 
Sbjct: 364 GTALPENLIATELKELWQNENIHKIGHNIKEFITWLLKHDVELNGLYFDTMIAEYLIDSI 423

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            NG P A      + K  ++ +    EL+ +    + +  +                +Y 
Sbjct: 424 RNGYPIA----SLSHKYLNRSVPSLDELLGKGKGAKKYSEIPP----------ERLKDYS 469

Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             +V    +I+   + +  +          E  L  +  ++   G+ VD A  H   +++
Sbjct: 470 AYNVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEYHGFKVDAAKLHEYGEVL 529

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
                 L++ +  L  G   +    ++L T LF +  L +   T+T     +   ++L  
Sbjct: 530 LSRIKDLEKVIYMLA-GEEFNINSTKQLGTILFEKLKLPVVKSTKTGYSTDVEVLEEL-- 586

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                  +        +   +++   ++              P 
Sbjct: 587 ------------------YYKHDI--------IPCIIEYRQLTKLYTTYAEGLEKVINPV 620

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIE 385
             + H   +Q +T      +++P+   I         +R   I S E    V AD + IE
Sbjct: 621 TGKIHSSFNQTVTATGRISSTEPNLQNIPVRHEMGREIRKAFIPSSENAVFVDADYSQIE 680

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA + G++  + AF  GED++  T +  F+VAP  VT + R   K +   + Y    
Sbjct: 681 LRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELRRKAKAVNFGIVYGISD 740

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +A   G+                    A+ +       +P+       + T  + 
Sbjct: 741 Y---GLARDLGITRKE----------------AKRYIDDYFAKYPK-------VKTYVDE 774

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           + +                 Q + +T+ + +                         LP  
Sbjct: 775 IVRV-------------GQEQGYVETLFHRR-----------------------RYLPEL 798

Query: 566 RSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621
            S  +       R  +NT                   +Q  + DI+   M+   KA    
Sbjct: 799 ASKNFHQRSFGKRVAMNTP------------------IQGTAADIIKIAMVKVYKALKES 840

Query: 622 ---YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
                ++L VHDE+V ET + +      L    M         +PL  +
Sbjct: 841 GLKSRLILQVHDELVIETFEDELETVKELVKKCMEEAVE--LSVPLVVD 887


>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
 gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
          Length = 939

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/577 (16%), Positives = 190/577 (32%), Gaps = 71/577 (12%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
           D    G    A D+  + F+    +    PV   D      +          T +T++  
Sbjct: 371 DTETTGTDANAVDLVGMSFSIKAGEGWYIPVPA-DKAQAQAIVDSFLPLFNTTHITLIGQ 429

Query: 72  NSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           N  ++  V+K      + P+   +    L    G         + L+     +E    LI
Sbjct: 430 NIKYDMIVMKWYGVEFNGPVFDTMLAHYLIEPEGRRGMDLLSAQYLQYEPVSIET---LI 486

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------S 180
            +  KG+ +                   EY   D  +T ++ ++  PL            
Sbjct: 487 GKKGKGQGN---------MRDVEIDKIKEYAVEDADITLQLKEKFAPLLPLKAVDKVFYD 537

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L  +   +   G  +D+      ++ ++ E  + ++ + +   G+  +    ++L 
Sbjct: 538 VENPLVRVLTDMEYEGIALDIQALSDYSRELETEIKRAEESVYTQA-GVRFNLASPKQLG 596

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             LF +                      L P+A +    +       + KL    + +  
Sbjct: 597 EVLFEKL--------------------LLDPKAKKTKTGQYATGEDVLAKLANKHQIVED 636

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                  L F   S+         P     R +R H   +Q +       +++P+   I 
Sbjct: 637 ------ILVFRELSKLKSTYVDALPLMLNKRTNRVHTSYNQAVAVTGRLSSNNPNLQNIP 690

Query: 361 -----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   VR   +A  E   L+ AD + IE R++A ++G+   + AF  G D++  T A
Sbjct: 691 IRTDRGREVRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHMIDAFRQGLDIHAATAA 750

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + + V  A VT D R   K +   + Y   A    +     G+       L+    A   
Sbjct: 751 KVYGVELADVTADMRRNAKSVNFGIIYGVSAFGLSE---NLGIARGEAKTLIDNYFAQYP 807

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                   +   ++  + A ++ ++ T   R K+  +  +S  + +     +        
Sbjct: 808 ------SIKKYMDDQIKSAQQNGYVETLLGR-KRWLKDINSSNAVVRGYAERNAINMPIQ 860

Query: 535 GKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
           G A    K   + +    K +N    ++L     LV+
Sbjct: 861 GTAADMIKLAMISIHKTLKKENLRSRMILQVHDELVF 897


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 201/630 (31%), Gaps = 137/630 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPS-ALKAV 112
           +V KE +EN D      +S   R V+      +++         +LA     P  +   V
Sbjct: 359 EVFKEWVENDDQKKWVFDSK--RAVVALRWQGIEL--KGAEFDTLLAAYIINPGNSYDDV 414

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               K     +    E +  + KG       +     H     L  +  +  +    E  
Sbjct: 415 ASVAKDYGLHIVSSDESV--YGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENN 472

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +LE     E  L  +   +   G  VDV     + + +  +  + ++++  +  G   +
Sbjct: 473 DQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGTKLKEYEEKIHEIA-GEPFN 531

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF + GL +   T+T       VL            +   R         
Sbjct: 532 INSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQ-------- 583

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                       G+L+ T    G  +  R           P   + H   +Q +T     
Sbjct: 584 -----------IGKLQSTYI-EGLLKVTR-----------PDSHKVHTRFNQALTQTGRL 620

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            ++DP+   I         +R   + SE    +  AD + IE RVLA ++ ++  ++AF 
Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+VA  +VT   R   K +   + Y        +     G+      
Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAG 737

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +        + ++    +   E+  + A +  ++ T                      
Sbjct: 738 AFID------RYLESFQGVKAYMEDSVQEAKQKGYVTT---------------------- 769

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                          +  +RR +P +  +           + RS         R+ +NT 
Sbjct: 770 ---------------LMHRRRYIPELTSRNF---------NIRSFA------ERTAMNTP 799

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++             ++L VHDE++ E P
Sbjct: 800 ------------------IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAP 841

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             + E    ++  +M    + A  +PLK +
Sbjct: 842 KEEIEILEKLVPEVMEH--ALALDVPLKVD 869


>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
 gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
          Length = 901

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/533 (16%), Positives = 171/533 (32%), Gaps = 69/533 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK   EN  +  +  +  F+R +L       I ++  I   +L               A 
Sbjct: 376 LKNLFENASIRKIGQHLKFDRHILARY---GISLNGVIDDTMLMSYC-------YNSTAT 425

Query: 117 KLSSQKMEEG---KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           + +   + +    K+ I      E       + +           +Y   D  +T ++++
Sbjct: 426 RHNMDDLADFYLNKQTIRF----EDIAGSGAKQRRFDEIDLETAMQYACEDADITLQLYQ 481

Query: 174 ----RL--EP-----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
               +L  EP       + E+ L  +   +  +G  +        +Q +  +   L ++ 
Sbjct: 482 FFQQKLASEPTLQALYENVERPLAEILWAMEHQGVKIAGDKLAVQSQELAAQLKTLQKQA 541

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
             L  G V +    ++L+  LF    L +   T T                         
Sbjct: 542 YQLAGG-VFNLDSPKQLQEILFERLALPVIHKTPTGQASTNEEV---------------- 584

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             + A L+ + L E +         L +    +         P    P   R H    Q 
Sbjct: 585 LQKLAELRQSALPEII---------LNYRALGKLKSTYTDKLPELIDPDSKRVHTSYHQA 635

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      +SDP+   I         +R   IA EG  ++ AD + IE R++A ++ ++ 
Sbjct: 636 VTSTGRLSSSDPNLQNIPIRSDEGRRIRQAFIAEEGYSILAADYSQIELRIMAHLSQDER 695

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF+  +D++  T A  F+VAP  V ++QR   K +   L Y   A     +A    +
Sbjct: 696 LQRAFQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIYGMSAF---GLARQLNI 752

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +        +     +    ++   +       +G             H++ 
Sbjct: 753 SRTQAAEYID--KYFHRYPQVLAYMDSARQTAQQQGYVSTLLGRRL-----YIPDIHNKN 805

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +      +        G A    K   V        +    L++     LV+
Sbjct: 806 MQRRRAAERLAINAPMQGSAADIIKLAMVQFWQTYGAQKECRLLMQVHDELVF 858


>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963]
          Length = 915

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 124/665 (18%), Positives = 204/665 (30%), Gaps = 158/665 (23%)

Query: 25  AEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
           A D      A      +    L D + D   P+ L EA         A         + A
Sbjct: 372 ASDGECAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWA---------IHA 415

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                  +        LA     P        +  L    +   K  +     G+    L
Sbjct: 416 LRGRGWTLGGLTSDTALAAYLVRPGQ-----RSFNLDDLSLRYLKRELRAETSGQEQLSL 470

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRG 196
            D  +    EA        +  + +   +   LE       LS  E  L      I   G
Sbjct: 471 LDDTEQLDAEAAETAMLSAQAVLDLAAALGTELESIESKSLLSDMELPLTIELAQIEATG 530

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD A  H L      +          +    + +    ++L+  LF E  +     T+
Sbjct: 531 IVVDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTK 589

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313
           T       + + L  +    F   + A R A    + ++ L++A+  DGR+  T      
Sbjct: 590 TGYSTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTT------ 643

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                     +Q +       ++DP+   I         +R   
Sbjct: 644 -------------------------FNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGF 678

Query: 369 IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  +G   L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT +
Sbjct: 679 VVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPE 738

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K M   L Y   A     +AS   ++                             
Sbjct: 739 LRRRVKAMSYGLAYGLSAY---GLASQLKISTEEA------------------------- 770

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      +R   + + LH   EQ  ++G       RR   
Sbjct: 771 -------------------KQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLYGRRRY- 810

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                LN+  RQ  RE      L   I Q  + 
Sbjct: 811 --------------LP---------------DLNSDNRQ-RREVAERAALNAPI-QGTAA 839

Query: 608 DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKG 660
           DI+   M+N  KA  D      ++L VHDE+V E   ++ E   +++   M +       
Sbjct: 840 DIIKVAMINVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LS 897

Query: 661 LPLKA 665
           +PL  
Sbjct: 898 VPLDV 902


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 123/687 (17%), Positives = 208/687 (30%), Gaps = 148/687 (21%)

Query: 5   FIDFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
             D ET S   +T    G+    E      +  A    D PV+      D V+   LK  
Sbjct: 339 SFDTETTSLDPMTAQIVGLSFAVEAGHAAYVPVAHRGPDAPVQ---LPRDEVL-AKLKPW 394

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+     V  +  ++  VL         I     TL+ +              AL+   
Sbjct: 395 LESAKHKKVGQHLKYDEQVLANYGIEMRGIE--HDTLLQSYVLESHRPHDMDNLALRHLG 452

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  + +++  +  +                 A     EY   D  +T  + + L P  +
Sbjct: 453 VKTIKYEDVAGKGAQQ----------IGFDEVALDKAAEYAAEDADITLRLHQTLYPQLA 502

Query: 181 KEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E+ L ++ + I              G  +D       +  +     +L+ E   L  G 
Sbjct: 503 AEKTLEHVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEIAARLIELESEAYVLAGG- 561

Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++    F    L +         +T + VL    +  P    +  +R     
Sbjct: 562 EFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHR----- 616

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                     G S+         P        R H    Q +  
Sbjct: 617 --------------------------GLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAV 650

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                ++DP+   I         +R   IA  G KLV AD + IE R++A ++G++  L+
Sbjct: 651 TGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLR 710

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  GED++  T A  F+V P +V+ DQR + KV+   L Y   +     +AS  G+  +
Sbjct: 711 AFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSF---GLASNLGITRD 767

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +        +       R+M E     A    ++ T   R +    + +      
Sbjct: 768 AAKLYID-----RYFARYPGVARYMDETRL-SAKAKGYVETVFGR-RLWLPEINGGNGPR 820

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +A       G A    K   +                                  
Sbjct: 821 RQAAERAAINAPMQGTAADLIKLSMI---------------------------------- 846

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
               ++   E   G ++   I+Q                        VHDE++ E PD +
Sbjct: 847 --AVQKWIEESNIGTRM---IMQ------------------------VHDELILEVPDEE 877

Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                  L  LM      A  +PL AE
Sbjct: 878 LPEVRKRLPELMCGVA--ALKVPLVAE 902


>gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 878

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/623 (16%), Positives = 203/623 (32%), Gaps = 149/623 (23%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVL-----ARS 102
           D      +KE  E+  +   + +   +  +L     +D  +P    +    L     +  
Sbjct: 351 DEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAK-LGIDGALPYDDIMLMHYLIDPSRSSY 409

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIAR----FCKGETHECLYDRNKPNHREAWRLFG 158
           +    +   +   +      + +GK+ +      F K      +       +    +L  
Sbjct: 410 DMKTLSQSYLDYEVNNPEDLLGKGKKALKYEDLDFDK--LGNFMASEINAIYDAKDKLVD 467

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +  +       +++K        E EL  +   +   G+  D  +   L + +D +  +L
Sbjct: 468 KLNEY---HMYDLYK------EIEIELSKVLADMEIVGFVTDRKVLEELKEGIDADIDEL 518

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQ 275
            QE+  L+ G   +    ++L   LF +  L +   T+T   T   VL   +       +
Sbjct: 519 TQEIYELS-GSEFNINSTKQLGEVLFKDLELPVIKKTKTGFSTDASVLEKLRDKHQIIPK 577

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R    +     +  L +A++ DGR+R T +                 QN+      
Sbjct: 578 IERYR-ELFKLRSTYIEGLEKAIDYDGRIRSTFR-----------------QNI------ 613

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
                          + DP+   +         +R    A EGK L+ AD + IE R+LA
Sbjct: 614 --------AATGRLSSQDPNLQNLPIKTDEGRLIRKAFKAEEGKILIDADYSQIELRILA 665

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G++  + AF   +D++  T ++ F+    +VTK QR+  K +   + Y        +
Sbjct: 666 SLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTKRQRSEAKAVNFGIIYGISDYGLSQ 725

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                 ++       +    A           +   ++  E A ED ++ T         
Sbjct: 726 ---NLNISRKEAKEYIDNYMASYP------SIKEYMDSIVEKAKEDGYVETLF------- 769

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                                         ++RR VP +              + R+   
Sbjct: 770 ------------------------------KRRRYVPEI--------------NSRNFNV 785

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDI 624
           R  G  R  LNT                   +Q  + DI+   M      +   K    I
Sbjct: 786 RSFGQ-RVALNTP------------------IQGTAADIIKIAMIETYKNLKKEKIDAKI 826

Query: 625 VLTVHDEIVCETPDTDEFNASML 647
           +L +HDEI+ E    DE  A  +
Sbjct: 827 ILQIHDEIILEASKEDEDRAIEI 849


>gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
 gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
          Length = 881

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 116/639 (18%), Positives = 204/639 (31%), Gaps = 160/639 (25%)

Query: 57  LKEALENTDVTIVAHNSYFER--TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            KE LENT + +      F+R   +L     L I + R      LA+          +  
Sbjct: 363 FKEFLENTALKVY----DFKRSKVLLSR---LGIELSRPAFDSRLAKYLLSTVDNNEIVT 415

Query: 115 ALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----- 168
              L    K+ E + +  +  K         R  P                +        
Sbjct: 416 IAGLYGKTKLAEDEAVYGKGAK---------RALPEKAILLSHLARKVTVLIETEKPMTD 466

Query: 169 -REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                 +L  L   EQ L ++   +   G  V+     T+    +   T+L QE+  L  
Sbjct: 467 LLRQHDQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQAENERILTRLTQEIYDLA- 525

Query: 228 GLVSSSRCLEKLKTWLFLETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282
           G   +    ++L   LF + GL       T+T       VL     + P   ++ + R  
Sbjct: 526 GEEFNINSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQI 585

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +   +  L + + +DG++                               H    Q 
Sbjct: 586 AKIQSTY-VMGLQDWILADGKI-------------------------------HTRYLQD 613

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396
           +T      + DP+   I         +R   +   E   L+ +D + IE RVLA ++G++
Sbjct: 614 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISGDK 673

Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             ++AF  G D++ +T  R FN+  P  VT + R   K +   + Y         +A+  
Sbjct: 674 HLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRRNAKAVNFGVVYGISDF---GLANNL 730

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       + T                                               
Sbjct: 731 GISRKEAKSYIDTYF--------------------------------------------E 746

Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           R   + N +     +  + G    +  +RR++P +              + R+   R   
Sbjct: 747 RYPGIKNYMENVVREARDKGYVETLFHRRREIPDI--------------NSRNFNVRGF- 791

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628
             R+ +N+                   +Q  + DIL   M+   +A  D      ++L V
Sbjct: 792 AERTAINSP------------------IQGSAADILKIAMIRLGQALIDGNFKTRMLLQV 833

Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
           HDEIV E P+ +      L   +M S       +PLKA+
Sbjct: 834 HDEIVLEVPENELTAIKALVKDIMESAIE--LSVPLKAD 870


>gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
 gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
          Length = 881

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/664 (15%), Positives = 203/664 (30%), Gaps = 154/664 (23%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++ FA+   +          +  + +   L++ L +   T    ++      L      
Sbjct: 335 EIVGFAWSNGNR----IYVTDNLSLLEDNALQDWLFDAKRTKSVFDAKRTTVALHRYVG- 389

Query: 87  DIPIHRWICTLVLARSN----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
               +      +LA          + L  V     L+  + +E   +  +  K    + L
Sbjct: 390 --SPNGIQFDSLLACYLLDTNDSSNDLALVAHRYGLTEIETDE--AVYGKGAK----KGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVD 200
            + N+  +    R      K D  ++ E+ ++         E  L ++   +   G  VD
Sbjct: 442 PEDNERFYSHLARKVATMQKLDTKLSDELVEKGQWTLYKEMELPLSFILAEMEITGIHVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
                 +      +   +++++ +       +    ++L   LF + GL +   T+T   
Sbjct: 502 AQRLIAMKSEFATKLHDIEEKIYAQA-NERFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               VL   K   P    +   R  A   +   +  L+  + SDG++             
Sbjct: 561 TAVDVLEQLKVQAPIVEDILTYRQIAKIQSTY-VEGLLRMIQSDGKV------------- 606

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS- 371
                             H    Q +T      + DP+   I         +R   +   
Sbjct: 607 ------------------HTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQAFVPRN 648

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           +   +  +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R 
Sbjct: 649 KNWVIYSSDYSQIELRVLAHISKDEHLQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRR 708

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y        +     G+        + T                      
Sbjct: 709 QAKAVNFGIVYGISDYGLSQ---NLGITRKQAQQYIDTYF-------------------- 745

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLV 549
                                    R   +   +    EQ  ++G    +  +RR +P +
Sbjct: 746 ------------------------ERYPGVKAYMENVVEQAKKDGYVETLYHRRRYLPDL 781

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
           Y K           + RS         R+ +N+                   +Q  + DI
Sbjct: 782 YAKNY---------NIRSFA------ERTAINSP------------------IQGSAADI 808

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLP 662
           L   M+         K    ++L VHDE+V E P+ +  +   L   +M    + A  +P
Sbjct: 809 LKIAMIEMNKRLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVKEVMEHAVTLA--IP 866

Query: 663 LKAE 666
           L  +
Sbjct: 867 LVTD 870


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/546 (17%), Positives = 181/546 (33%), Gaps = 77/546 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-----LKEALENTDVTI 68
           ID    G+  + +   +I  +F    +     D      + +      + + LE  D+ +
Sbjct: 354 IDFETTGLDTFKD--TIIGISFAIKSNEAFYLDLSGRTKIDKDKCMNLVFDTLEKEDIKV 411

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + HN  +E  +++A   +   I       ++A     P+               M++   
Sbjct: 412 IGHNLKYEYKMMRA---IGKSIGNMYFDTMVAAYLINPTR----------GRYNMDDLA- 457

Query: 129 LIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----- 181
            IA              N  K       +   EY   D  VT   ++   PL        
Sbjct: 458 -IAYLSYNTIKYADLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLED 516

Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   +   G  +       L+        K  +++     G   + +  
Sbjct: 517 LFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYKEA-GEEFNLQSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+  LF + G+     T+T          +L                S   K+     
Sbjct: 576 KQLEYILFDKMGIPPTKKTKTGFSTDEEVLTEL----------------SQKYKIAEY-- 617

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      L +   ++       VFP     +  R H   +Q +T      +S+P+ 
Sbjct: 618 ----------MLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNL 667

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R+  I  +G  L+ AD + IE R+LA  + +   ++AF+  +D++  
Sbjct: 668 QNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKNNDDIHRK 727

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  + ++V+   VT   R I K++  ++ Y   A     ++   G+        +K    
Sbjct: 728 TAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAF---GLSKELGIKRKEAEDFIK--GY 782

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +   + FC    E   E      F+ T C R++   +  +S  +   NE  +    T
Sbjct: 783 FSTYSRVKPFC----EEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNT 838

Query: 532 IENGKA 537
           +  G A
Sbjct: 839 LIQGSA 844


>gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/541 (16%), Positives = 184/541 (34%), Gaps = 71/541 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110
           +  K+ +E+       +++      L+      I +      L+L      PS       
Sbjct: 355 EAFKKWVEDESKIKHVYDAKRSIVALRRY---GIDLRGTDFDLLLVSYLLNPSDTVEDFA 411

Query: 111 AVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +V +     + + +E   +  +  K     E  Y  +     EA     E C      T+
Sbjct: 412 SVAKTHDYGNVETDE--AVYGKGAKRKLPEEKRYAEHISRKAEAIDALCEPC------TK 463

Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            +     LE     E  L  +   +   G  VD      + +   +   +++Q + S+  
Sbjct: 464 ALKNNGQLELFEQLELPLSLILADMEYTGVKVDTDRLKEMGEEFKLRLHEIEQRIYSMA- 522

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284
           G   +    ++L   LF + GL +   T+T       VL   +       ++ + R    
Sbjct: 523 GTEFNINSPKQLGVILFEKMGLPVIKKTKTGYSTSADVLEKLEPAHEIVREILHYRQL-G 581

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     +  L++ ++ DG++                               H   +Q +T
Sbjct: 582 KLQSTYIEGLLKVVHQDGKV-------------------------------HTRFNQALT 610

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398
                 ++DP+   I         +R   + SE G  +  +D + +E RVLA ++G++  
Sbjct: 611 QTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPSEEGWLIFSSDYSQVELRVLAHISGDEKL 670

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF  G D++  T    F+V   +VT + R   K +   + Y        +     G++
Sbjct: 671 IEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNFGIVYGISDYGLSQ---NLGIS 727

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +K   A           +   +     A +  ++ T  +R ++   +  SR  
Sbjct: 728 RKEAGEFIKRYFASYP------RVKEYMDEIVREAKQKGYVSTLLKR-RRYLPEITSRNF 780

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            L +   +    T   G A    K+  + +   +KK+K    L+L     L++       
Sbjct: 781 NLRSFAERTAMNTPIQGSAADIIKKAMIDMAKRLKKEKLRARLLLQVHDELIFEAPEEEI 840

Query: 578 S 578
            
Sbjct: 841 E 841


>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
          Length = 955

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 111/636 (17%), Positives = 188/636 (29%), Gaps = 138/636 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  V  N  ++  VL       I +     T++++ +     +   +G   
Sbjct: 421 LKPLLESDAVVKVGQNIKYDLNVLARH---GIAVAPIEDTMIVSFALDAGRSQDGIGGGH 477

Query: 117 K---LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               L+ + +          C          +  P          EY   D  VT  ++ 
Sbjct: 478 GMDELAQRHLGHTCLTFKEIC------GTGKKAIPFGEVPIDRATEYAAEDADVTSRLYT 531

Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P  + E          + L  +   +   G  VD      L++    E  +L+ E+ 
Sbjct: 532 HLKPRLAVEGGTRIYERVDRPLIPVVAGMERHGIKVDRQQLAALSERFARETARLEGEIH 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKL-TPQAIQVFN 278
            +  G   +    ++L   LF + G            +T Q VL        P A +V  
Sbjct: 592 EIA-GQEFTVGSPKQLGDILFDKMGYKGGKKGKSGQYSTDQSVLEKLDATGAPIATKVLE 650

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A                               +              P+ +R H  
Sbjct: 651 WRQLA-------------------------------KLKSTYTDALQQAINPKTNRVHTS 679

Query: 339 LDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              +        ++DP+   I     I   +R   +A EG  L+ AD + IE R+ A MA
Sbjct: 680 YSLVGAQTGRLSSTDPNLQNIPIRTEIGREIRQAFVADEGNVLLAADYSQIELRLAAHMA 739

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +AF  GED++  T    F      V +D RA  K +  A+ Y         +A 
Sbjct: 740 DVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILYGIS---RWGLAG 792

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+  +    L+    A   +   + +     E   E        G      K  + + 
Sbjct: 793 RLGIEADEAQDLIDIYFAR--FPGIQRYIVNTMETVRECGYSQTLFGR-----KTWFPRI 845

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +S+         +A       G +    KR    +                         
Sbjct: 846 NSKNQAERQGSERAAVNAPIQGTSADIIKRAMARM------------------------- 880

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                               G  L E  ++  + D            G  ++L VHDE+V
Sbjct: 881 --------------------GPALAEAGLKPDAPD------------GVRMLLQVHDELV 908

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWA--KGLPLKAE 666
            E P+     A  ++  +M      A    +PL  E
Sbjct: 909 FEMPEGLVEQAKPVIRSVMADAAGPAVELSVPLGVE 944


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/535 (17%), Positives = 169/535 (31%), Gaps = 103/535 (19%)

Query: 6   IDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP- 54
           ID ET S   +             G   Y      +  A  +   P           +P 
Sbjct: 350 IDTETDSLDPMRARLIGISLSVTPGEAAY------LPLAHAYPGAP---------EQLPM 394

Query: 55  ----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPS 107
               + L+  LEN D   +  N+ ++R V     N  + I  +    +L         P 
Sbjct: 395 AEVLERLRPWLENADKPKLGQNAKYDRHV---FANAGVTIRGYAHDTLLESYVIEAHKPH 451

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           +L ++     L        +++  +  K  T + +          A  +   Y   D  +
Sbjct: 452 SLDSLVSRH-LGRDDTLSYEQVCGKGAKAITFDQV----------ALDVATRYSGEDADL 500

Query: 168 TREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T ++ +RL P              E ++  + Q I   G  VD  L    +  +  +   
Sbjct: 501 TLQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQT 560

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+ +   L  G   +    +++   LF    L ++  T     +T + VL    +  P  
Sbjct: 561 LEAQAFELAGG-AFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLP 619

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
                                          R  L     S+         P    P   
Sbjct: 620 -------------------------------RVILDHRSLSKLKSTYTEKLPQMINPDTG 648

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q +       ++DP+   I         +R   +A +G  +  +D + IE R+
Sbjct: 649 RVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPKGWLIASSDYSQIELRI 708

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ +   L AF  GED++  T A  F V   +V+ DQR + KV+   L Y   A   
Sbjct: 709 MAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTSLEVSSDQRRMAKVINFGLIYGMSAF-- 766

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             +A   GL  +     +    A   +     +    ++   E    +   G   
Sbjct: 767 -GLARNLGLERSAAQLYIDRYFAR--YPGVAAYMERTRKLAAEQGYVETVFGRRL 818


>gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
 gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
          Length = 1032

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/635 (15%), Positives = 186/635 (29%), Gaps = 138/635 (21%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
              L+  L++  +  +  N  F   +L       + +       +++           L A
Sbjct: 504  DALRPLLDSAGLAKIGFNIKFTAVLLAQH---GVTLRNIDDVQLISYVLDAGRGSHGLDA 560

Query: 112  VGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E+ L  +   +                           +       EY      V   
Sbjct: 561  LSESNLGHTLHVLGAL-------------TGSGKAKIAFDQVPIDRATEYGGERSDVALR 607

Query: 171  IFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +++ L+P    E+           L  +   +  RG  +D  +   L+        +++ 
Sbjct: 608  LWRVLKPRLVAERMMAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEA 667

Query: 221  ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            E+  L  G   +    ++L   LF + GL     T+T      +       +    F   
Sbjct: 668  EIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFP-- 724

Query: 281  MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                    R  L +   S+         P    P+  R H    
Sbjct: 725  ------------------------RKILDWRQVSKLRSTYTDALPTYVHPQTQRVHTTYA 760

Query: 341  QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
               T      +++P+   I         +R   +A+ G +LV AD + IE R+L+ +A  
Sbjct: 761  LAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHRLVSADYSQIELRLLSEVADV 820

Query: 396  QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                KAF+ G D++  T +  F V    +  D R   K +   + Y   A     +A+  
Sbjct: 821  PALRKAFQDGIDIHAMTASEMFGVPVEGMPSDIRRRAKAINFGIIYGISAF---GLANQL 877

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            G+        +K     E +     +    ++    H   +                   
Sbjct: 878  GIPREEAGAYIK--RYFERFPGIRAYMDETRDFCRTHGYVE------------------- 916

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                   +  ++   P +             PS R+   R   N
Sbjct: 917  ----------------------TLFGRKCHYPDIKASN---------PSIRAFNERAAIN 945

Query: 576  NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
             R                 G   + I +A+ R    E  +   K    ++L VHDE++ E
Sbjct: 946  ARL---------------QGSAADIIRRAMVR---MEDALAEKKLAAQMLLQVHDELIFE 987

Query: 636  TPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
             P+ +      ++ H+M   P  A    +PL+ + 
Sbjct: 988  VPEDEVTATLPVVSHVMQDAPFPAVILNVPLQVDA 1022


>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
 gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
          Length = 913

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 117/650 (18%), Positives = 199/650 (30%), Gaps = 146/650 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D PV+      D V+   LK  LE+     V  +  ++  VL         I     TL+
Sbjct: 377 DAPVQ---LPRDEVL-ARLKPWLESAGHKKVGQHLKYDEQVLANYGIEMRGIE--HDTLL 430

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            +              AL+    K  + +E+  +       +  +D        A     
Sbjct: 431 QSYVVESHRTHDMDSLALRHLGVKTIKYEEVAGKGAG----QIGFD------EVALDKAA 480

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207
           EY   D  +T  + + L P  + E+ L Y+   I              G  +D       
Sbjct: 481 EYAAEDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQ 540

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263
           +  +     +L+ E   L  G   +    +++    F +  L +         +T + VL
Sbjct: 541 SSEIATRLIQLESEAYVLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVL 599

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               +  P    +  +R                               G S+        
Sbjct: 600 QKLAEDFPLPKILLEHR-------------------------------GLSKLKSTYTDK 628

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
            P        R H    Q +       ++DP+   I         +R   IA  G KLV 
Sbjct: 629 LPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPAGHKLVS 688

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  L +F  GED++  T A  F+V P +V+ DQR + KV+   
Sbjct: 689 ADYSQIELRIMAHISGDESLLHSFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFG 748

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y   +     +AS  G+  +     +        +       R+M E     A    +
Sbjct: 749 LIYGMSSF---GLASNLGITRDAAKLYID-----RYFARYPGVARYMDETRV-SAKAKGY 799

Query: 499 IGTACERVKKAW-RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
           + T   R  + W  + +           +A       G A    K   +           
Sbjct: 800 VETVFGR--RLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMI----------- 846

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                                      ++   E   G ++   I+Q              
Sbjct: 847 -------------------------AVQKWIEESKIGTRM---IMQ-------------- 864

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                     VHDE++ E PD +  +    L  LM         +PL AE
Sbjct: 865 ----------VHDELILEVPDAELSDVRKRLPELMCGVAD--LKVPLVAE 902


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/630 (16%), Positives = 201/630 (31%), Gaps = 137/630 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPS-ALKAV 112
           +V KE +EN +      +S   R V+      +++         +LA     P  +   V
Sbjct: 359 EVFKEWVENDEQKKWVFDSK--RAVVALRWQGIEL--KGAEFDTLLAAYIINPGNSYDDV 414

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               K     +    E +  + KG       +     H     L  +  +  +    E  
Sbjct: 415 ASVAKDYGLHIVSSDESV--YGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENN 472

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +LE     E  L  +   +   G  VDV     + + +  +  + ++++  +  G   +
Sbjct: 473 DQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIA-GEPFN 531

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF + GL +   T+T       VL            +   R         
Sbjct: 532 INSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQ-------- 583

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                       G+L+ T    G  +  R           P   + H   +Q +T     
Sbjct: 584 -----------IGKLQSTYI-EGLLKVTR-----------PDSHKVHTRFNQALTQTGRL 620

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            ++DP+   I         +R   + SE    +  AD + IE RVLA ++ ++  ++AF 
Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+VA  +VT   R   K +   + Y        +     G+      
Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAG 737

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +        + ++    +   E+  + A +  ++ T                      
Sbjct: 738 AFID------RYLESFQGVKAYMEDSVQEAKQKGYVTT---------------------- 769

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                          +  +RR +P +  +           + RS         R+ +NT 
Sbjct: 770 ---------------LMHRRRYIPELTSRNF---------NIRSFA------ERTAMNTP 799

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++             ++L VHDE++ E P
Sbjct: 800 ------------------IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAP 841

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             + E    ++  +M    + A  +PLK +
Sbjct: 842 KEEIEILEKLVPEVMEH--ALALDVPLKVD 869


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/629 (14%), Positives = 194/629 (30%), Gaps = 135/629 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG 113
           +  K   E+  +     +S      L     +++         +LA     P  +   V 
Sbjct: 358 ETFKSWAEDESMKKWVFDSKRSVVAL-RWQGIEL--KGTEFDALLAAYIINPGNSYDDVA 414

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              K     +    +  A + KG       ++   +H           +  +    E   
Sbjct: 415 SVAK--EYGLNIVSKDEAVYGKGAKRAVPAEKELADHLARKASAVNSLRDKLLHALEENN 472

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +LE     E  L  +   +   G  VDV     + + +  +  + ++++  +  G   + 
Sbjct: 473 QLELYEDLELPLALILGEMESMGVKVDVERLKRMGEELKAKLKEYEEKIHDIA-GEPFNI 531

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF + GL     T+T       VL            +   R    +     
Sbjct: 532 NSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLADKHDIVAHILQYRQ-IGKLQSTY 590

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++    D                                + H   +Q +T      
Sbjct: 591 IEGLLKVTRKD------------------------------SHKVHTRFNQALTQTGRLS 620

Query: 351 TSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           ++DP+   I         +R   + SE    +  AD + IE RVLA ++ ++  ++AF  
Sbjct: 621 STDPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTN 680

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
             D++  T    F+V+  +VT+  R   K +   + Y        +     G+       
Sbjct: 681 DMDIHTKTAMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAGA 737

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +        + ++    +   E   + A +  ++ T                       
Sbjct: 738 FID------RYLESFPGVKAYMEESVQEAKQKGYVTT----------------------- 768

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                         + ++RR +P +  +           + RS         R+ +NT  
Sbjct: 769 --------------LMQRRRYIPELTSRNF---------NLRSFA------ERTAMNTP- 798

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPD 638
                            +Q  + DI+ + M++             ++L VHDE++ E P 
Sbjct: 799 -----------------IQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPK 841

Query: 639 TD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            + E    ++  +M    + A  +PLKA+
Sbjct: 842 EEIEILEKLVPEVMEH--ALALDVPLKAD 868


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
          Length = 880

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/630 (16%), Positives = 201/630 (31%), Gaps = 137/630 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPS-ALKAV 112
           +V KE +EN +      +S   R V+      +++         +LA     P  +   V
Sbjct: 359 EVFKEWVENDEQKKWVFDSK--RAVVALRWQGIEL--KGAEFDTLLAAYIINPGNSYDDV 414

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               K     +    E +  + KG       +     H     L  +  +  +    E  
Sbjct: 415 ASVAKDYGLHIVSSDESV--YGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENN 472

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +LE     E  L  +   +   G  VDV     + + +  +  + ++++  +  G   +
Sbjct: 473 DQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIA-GEPFN 531

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF + GL +   T+T       VL            +   R         
Sbjct: 532 INSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQ-------- 583

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                       G+L+ T    G  +  R           P   + H   +Q +T     
Sbjct: 584 -----------IGKLQSTYI-EGLLKVTR-----------PDSHKVHTRFNQALTQTGRL 620

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            ++DP+   I         +R   + SE    +  AD + IE RVLA ++ ++  ++AF 
Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+VA  +VT   R   K +   + Y        +     G+      
Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAG 737

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +        + ++    +   E+  + A +  ++ T                      
Sbjct: 738 AFID------RYLESFQGVKAYMEDSVQEAKQKGYVTT---------------------- 769

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                          +  +RR +P +  +           + RS         R+ +NT 
Sbjct: 770 ---------------LMHRRRYIPELTSRNF---------NIRSFA------ERTAMNTP 799

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++             ++L VHDE++ E P
Sbjct: 800 ------------------IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAP 841

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             + E    ++  +M    + A  +PLK +
Sbjct: 842 KEEIEILEKLVPEVMEH--ALALDVPLKVD 869


>gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805]
 gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805]
          Length = 988

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/541 (17%), Positives = 173/541 (31%), Gaps = 126/541 (23%)

Query: 155 RLFGEYCKGDVTVTREI------------FKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                YC  DV +TR++             +    L   E  L  +   +   G  +D+ 
Sbjct: 534 DQAALYCAMDVHLTRKLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLT 593

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTC- 259
              TL++ +    T+L+   +    G+  +    ++L   LF   GL  +    T+T   
Sbjct: 594 YLDTLSKEMGETLTRLEANAKQ-AAGVDFNLASPKQLGELLFETLGLDRKKSRRTKTGYS 652

Query: 260 --QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               VL       P    V  +R+                                S+  
Sbjct: 653 TDATVLDKLADDHPVVPLVLEHRVL-------------------------------SKLK 681

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372
                  P        R H + +Q +T      +S+P+   I      S  +R   +  E
Sbjct: 682 STYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEYSRRIRKAFLPQE 741

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+ AD + IE R+L  ++GE+   +A+  G+D++  T      +   ++T D+R +G
Sbjct: 742 HWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LDKDEITADERRLG 799

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y  GA   Q+ A  TG++       +  +   E +     F     E     
Sbjct: 800 KTINFGVIYGMGA---QRFARETGVSQAEAKEFL--SKYRERYPKVFAFL----ELQERL 850

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A+   ++ T   R +                                             
Sbjct: 851 ALSRGYVETILGRRRP------------------------------------------FH 868

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
            D+N L  +L         ++  + +       Q  R            +Q  S DI+  
Sbjct: 869 FDRNGLGRLLGKD----PFEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKL 918

Query: 613 GMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            M+    A         ++L VHDE+V E  P   E   +++   M +       +PL A
Sbjct: 919 AMIQLQAALQQQSLPARLLLQVHDELVLEVEPSALEDVKALVVSTMETAVE--LSVPLVA 976

Query: 666 E 666
           E
Sbjct: 977 E 977


>gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
 gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
          Length = 889

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 112/635 (17%), Positives = 200/635 (31%), Gaps = 150/635 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + +AL   D+    H+     T+L       +    ++    +A        L     + 
Sbjct: 370 VLKALFAADIKKNTHDVK---TLLSRLLEEGVEGDGFVFDTAIAAYL-----LAPTDGSY 421

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTVTREIFKR 174
           +L    +         F K +      D   P   +   L G   +C     + + +  R
Sbjct: 422 ELEKLGITYFN---QEFAKAKDTYLAPDAFSPLADQTAVLGGMLSHCALIGALKKVLAPR 478

Query: 175 LEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           LE L         E  L  +   +   G  VD         ++D        E+  L  G
Sbjct: 479 LEELGMHQLYYDIELPLCQVLSAMEHAGMLVDRKALSEFGDMLDERIAADQAEIYELA-G 537

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL     T+T       VL   +   P   ++   R     
Sbjct: 538 ETFNINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGQHPIIDKILEYRQYTKL 597

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   ++ L + +  DG                               R H      +T 
Sbjct: 598 KSTY-VDGLGKVIAPDG-------------------------------RIHTSFQNTVTA 625

Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +++P+   I     +   +R   +A  GK LV AD + IE R+LA +AG++  ++
Sbjct: 626 TGRLSSTEPNLQNIPVRTELGAELRKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIE 685

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF TGED++  T A+ F V   QVTK  R+  K +   + Y   A +  +          
Sbjct: 686 AFRTGEDIHTVTAAQVFGVPVDQVTKHMRSSAKAVNFGIVYGISAFSLSQD--------- 736

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                 IG      K+   +  +R S +
Sbjct: 737 --------------------------------------IGVPTYEAKEYIEKYFARFSGV 758

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +     +   +G       RR                 LP  +S  +          
Sbjct: 759 HAYMTDVVNRAKTDGYVSTLFGRR---------------RWLPELKSSNFN--------- 794

Query: 581 NTTTRQLTREYTYGGKLTENI-VQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
                      ++G ++  N+ +Q  + DI+   M++             ++L VHDE++
Sbjct: 795 ---------TRSFGERVALNMPIQGTAADIMKLAMLHVHSRLREEGLQARLILQVHDELI 845

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEG 667
            E P+ +     ++L   M S    A  +PL A+ 
Sbjct: 846 VECPEEEAETVKALLSREMESVAQLA--VPLIADA 878


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/642 (14%), Positives = 189/642 (29%), Gaps = 143/642 (22%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
              + V P VL   L +  + +V H+      VL       + +   +   ++A     P
Sbjct: 369 LSEEQVFP-VLFPFLADKKIALVGHDLKTVLIVLSQ---KGVKVQNPLLDTMVAAYILNP 424

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           +  +    +  +      + + L  +   G + +       P          ++    V 
Sbjct: 425 AR-RGYELSEIVQDYLHRQVEPLRKKLVGGSSPKQSPASFPP------ERLRDFACRRVE 477

Query: 167 VTREIFKRL-EPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              E+   L E +            E  L  +   + ++G  +D+ L   ++Q +    +
Sbjct: 478 AIGELASTLIEKMEETGLRELFDSVEMPLVAVLAAMEEKGVLLDLHLLKEMSQELGHLLS 537

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
             + ++ +L  G   +    ++L+T LF +  L     T+      +     L       
Sbjct: 538 LSEAKIYALA-GERFNIASPKQLQTILFEKLNLPKGKKTKGGYSTDVEVLSNLALNHELP 596

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                          L +   ++         P     R  R H
Sbjct: 597 AE----------------------------ILAYRSMAKLKSTYIDALPSLINIRTGRIH 628

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
              +Q +       +S+P+   I         +R   IA  G  +V AD + IE RVLA 
Sbjct: 629 TSYNQTVAATGRLSSSNPNLQNIPIRTLEGKRIRQAFIAPPGWAIVSADYSQIELRVLAH 688

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +   + AF  GED++  T A  F V P  +  + R   KV+   + Y   A     +
Sbjct: 689 LSEDPVLINAFAAGEDIHSRTAADVFGVFPEMINAEMRRQAKVINFGVLYGMSAF---GL 745

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           +   G+        +        +       +   +   + A E  ++            
Sbjct: 746 SRELGIPQKQAQAYIDG------YFKKYESVKTYLDGILQQARERGYV------------ 787

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                      +  +RR +P +             P+ R L   
Sbjct: 788 -------------------------TTLLNRRRYLPEINSVN---------PAVRQLA-- 811

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
                R  +N                    +Q  + D++   M+              + 
Sbjct: 812 ----ERMAINAP------------------IQGTAADLIKMAMLRIADLIREKGMKSAMT 849

Query: 626 LTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           + VHDE+V E P  ++     L    M         +PLK +
Sbjct: 850 MQVHDELVFEVPQEEKIALMNLVRQEMEGVVE--LKVPLKVD 889


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/501 (16%), Positives = 152/501 (30%), Gaps = 129/501 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +   G  V++     +   ++     L + +  L  G   +    ++L  
Sbjct: 483 ELPLTRVLGAMESYGVAVNMETLDLMGIELEGGLAALTEAIYELA-GEEFNLNSPKQLAV 541

Query: 242 WLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL     T+T       VL       P A ++   R  A               
Sbjct: 542 ILFEKLGLPPVKRTKTGFSTDAAVLEELACRHPIAAKLVEYRQLA--------------- 586

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                           +          P   PR    H   +Q +T      +S+P+   
Sbjct: 587 ----------------KLKSTYVDGLKPLVNPRTGSLHTSFNQTVTATGRLSSSEPNLQN 630

Query: 359 I-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I     +   +R   +    G+ L+ AD + IE R+LA ++G++  + AF  GED++  T
Sbjct: 631 IPVRLELGRRLRKAFVPHGPGRLLLAADYSQIELRILAHISGDEAMIAAFRRGEDIHART 690

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            A  F V   +VT   R   K +   + Y         ++   G++ +     ++     
Sbjct: 691 AAEVFGVPLGEVTPAMRRSAKAVNFGIVYGISDY---GLSRDLGISRSEAHDYIE----- 742

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                                  +   R   +   L +   +  
Sbjct: 743 ---------------------------------------RYFRRYRGVKAYLEEIVARAR 763

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           + G       RR             L  +  S R++        R+ +NT          
Sbjct: 764 QEGYVTTLLGRRRY-----------LPDLFSSNRNVRSF---GERTAMNTP--------- 800

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DI+   M+   +          ++L VHDE++ + PD D    + 
Sbjct: 801 ---------IQGTAADIIKMAMVKIFRLLEAQYPAARMILQVHDELIFDVPDDDLPAVAG 851

Query: 647 LYH-LMTSNPSWAKGLPLKAE 666
           L    M         +PL+ +
Sbjct: 852 LVKDTMEHTLE--LQVPLQVD 870


>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
 gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
          Length = 937

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/640 (14%), Positives = 171/640 (26%), Gaps = 155/640 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114
           LK  LE+  +  +  N  ++  +         PI   +     + A  +G     +    
Sbjct: 414 LKPVLEDDAILKIGQNMKYDAKIFARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L             I         +  +DR              Y   D  VT  +++ 
Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVDQAVCYAAEDADVTLRLWRL 519

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +P   +          E+ L  +   +   G  VD      ++     +   L+ E+  
Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAALEAEIHG 579

Query: 225 LTYGLVSSSRCLEKLKTWLFLET----GLHLEDLTETTCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF       G+  ++    T   VL            +V + 
Sbjct: 580 LAGG-PFNVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+              P   R H   
Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                +     ++DP+   I         +R   +A +GK LV  D + IE R+LA +A 
Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRTEEGRRIREAFVAPKGKLLVSVDYSQIELRILAHIAD 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  G D++  T A  FNV    +    R   K +   + Y         +A  
Sbjct: 728 IPALKQAFREGHDIHAMTAAEMFNVPLEGMDPMVRRQAKAINFGVIYGISGF---GLARN 784

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                   DA+ F     E  P                    R   
Sbjct: 785 LRIPR----------------ADAQGFIDRYFERFP------------------GIRAYM 810

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                          +     + +  R+                 +  P   +       
Sbjct: 811 DETVAF--------AKAHGFVQTLFGRR-----------------INTPEINAKGPGAGF 845

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630
             R+ +N                    +Q  + D++   M+   KA       ++L VHD
Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKALDGLPAKMLLQVHD 887

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667
           E++ E  +       + +  +M S    A    +PL  + 
Sbjct: 888 ELLFEVDEAAADPVIARVREVMESASEPAVKLSVPLTVDA 927


>gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115]
          Length = 880

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 117/668 (17%), Positives = 214/668 (32%), Gaps = 165/668 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85
            ++  A+G D   + +   D +  P+  + L K AL+  D+            VL + + 
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144
           +++P         LA+          +    +L  Q  +    E+  +  K         
Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436

Query: 145 RNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYC 198
           R  P   + +       +  +              +L+ L   EQ L ++   +   G  
Sbjct: 437 RALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAGIK 496

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256
           V+      +    +     L QE+  L  G   +    ++L T LF + GL LE    T+
Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555

Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           T       VL     + P   ++   R   S+     +  L EA+ +DG+          
Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                 H    Q +T      + DP+   I         +R   
Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643

Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
           +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT 
Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A+  G++       ++T                  
Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF---------------- 744

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRD 545
                                        R   + N +     +  + G    I  +RR 
Sbjct: 745 ----------------------------ERFPGIKNYMETIVREARDKGYVETIYHRRRS 776

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +P +              + R+   R+    R+ +N+                   +Q  
Sbjct: 777 LPDI--------------NSRNFNIRNF-AERTAINSP------------------IQGS 803

Query: 606 SRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA 658
           + DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    A
Sbjct: 804 AADILKVAMINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA 863

Query: 659 KGLPLKAE 666
             +PL A+
Sbjct: 864 --VPLVAD 869


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/640 (15%), Positives = 190/640 (29%), Gaps = 151/640 (23%)

Query: 41  PVELWDCVHDPVMPQ---------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           PV+L         PQ          L    +  ++TI+ HN  F+   ++     +    
Sbjct: 398 PVKLPPPELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPC 457

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T++ A                  S        + IA        + +  + K    
Sbjct: 458 AIFDTMIAAWLLDPDRT-----SFSLDSLASSLLKLQTIAY-------KDVVPKGKIFSD 505

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDV 201
             +     Y   D  +T + ++ L P   +          E  L  L   +   G  +  
Sbjct: 506 VPYEQAVAYAAEDADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFLKK 565

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                 ++ +  E    ++E+  +  G   +    ++L+  LF E  L     T+T    
Sbjct: 566 EELAEFSEELGKEIIVHEREIFDI-VGHEFNIASPKQLQEVLFTELKLPTGKKTKTGYST 624

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
             S  + L  + +                                 L++   ++      
Sbjct: 625 DTSVLEVLASEHVIPAK----------------------------ILEYRALTKLKSTYT 656

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
              P     +  R H    Q  T      + DP+   I         +R    A +GK L
Sbjct: 657 DALPALAD-KNGRVHTSFIQTGTATGRLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNL 715

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD A IE  +LA ++ ++  ++AF+ G D++  T A  F +   +V  D R I K + 
Sbjct: 716 ISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTIN 775

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A    ++++   +     A  ++T      +    +      E   E A   
Sbjct: 776 FGVMYGMSAF---RLSNALRIPRRQAADFIET------YFKTYSGVHIFMEELKESARRK 826

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++                                    + ++ R+R     +Y     N
Sbjct: 827 GYV------------------------------------ETLMGRRR----YIYAINSAN 846

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
            L               G  R  +NT                   +Q  + DI+   M+ 
Sbjct: 847 KL------------EQAGAERVAINTP------------------IQGSAADIVKTAMLK 876

Query: 617 ATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              A         ++L VHDE++CE P+ +      L   
Sbjct: 877 VQNALQAHKLQAKLLLQVHDELICEAPEKETETVKTLLRQ 916


>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
 gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
          Length = 935

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/566 (15%), Positives = 184/566 (32%), Gaps = 71/566 (12%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVAHNSYFERTVLKA 82
              ++  +F +                   + ++ +  LEN  +  +A N  ++  V K 
Sbjct: 376 QAELVGMSFAYKSGEAYYVPVPAGKENAQAVVEIFRPVLENEKILKIAQNLKYDAIVFKW 435

Query: 83  CFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
                + +       ++A     P         A    S      + LI +  K + +  
Sbjct: 436 Y---GVEVRGPYFDTMVAHYLLEPEMRHGMDYLAETYLSYSPISIEMLIGKKGKDQLNMS 492

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQT 191
             D              +Y   D  +T ++ +   P   +          E  L  +   
Sbjct: 493 QID---------LEKVTDYAAEDADITLQLKELFAPKLEEGGVQELFDTIECPLIKVLAD 543

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  +D       ++ ++++   L+Q +     G+  +    +++   LF    +  
Sbjct: 544 LEYEGIRIDSDYLDVYSKELEIQIQTLEQSIYEQA-GVKFNIGSPKQVGDLLFERLKVPY 602

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           +     T Q     +K L                                  ++  L F 
Sbjct: 603 KGAKTKTGQYSTDEDKLLELAPEFPI--------------------------IQTILNFR 636

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366
           G ++         P    PR  R H   +Q +       +++P+   I         VR 
Sbjct: 637 GLAKLKSTYVDALPKMVNPRTGRIHSSFNQALAATGRLSSNNPNLQNIPVRTPEGAKVRR 696

Query: 367 CVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             I  +    L+ AD + IE R++A ++G+   L+AF+  +D++  T A+ FNV    VT
Sbjct: 697 AFIPRDDQHTLLSADYSQIELRLIADISGDVAMLEAFQNNQDIHTATAAKVFNVPFDLVT 756

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           ++QR   K +  ++ Y  GA           +       L+        +    +  +  
Sbjct: 757 REQRYQAKTVNFSILYGAGATNLS---RQLSIKRTEAKELIDA------YFALYSGLKGY 807

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                E A ++ ++ T   R ++  R+ +S+ S   +   +    T   G A    K   
Sbjct: 808 MVTVVEDARKNGYVTTLMGR-RRYLREINSKSSLERSNAERVAVNTPVQGSAADMIKVAM 866

Query: 546 VPLVYMKKDKNNLI-LMLPSGRSLVY 570
           V +     ++     ++L     LV+
Sbjct: 867 VNIHQALLEQGLKTKMILQVHDELVF 892


>gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087]
          Length = 880

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 117/666 (17%), Positives = 217/666 (32%), Gaps = 161/666 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G D   + +   D +  P+  + L +    T     A        VL + + +
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRA-------KVLLSHYGI 388

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145
           ++P         LA+          +    +L  Q  +    E+  +  K         R
Sbjct: 389 ELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK---------R 437

Query: 146 NKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
             P   + +       +  +              +L+ L   EQ L ++   +   G  V
Sbjct: 438 ALPEQEQLFEHLARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKV 497

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET 257
           +      +    +     L QE+  L  G   +    ++L T LF + GL LE    T+T
Sbjct: 498 ERETLQGMQAENEKTLESLTQEIYDLA-GQKFNINSPKQLGTILFEDMGLPLEYTKKTKT 556

Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
                  VL     + P   ++   R   S+     +  L EA+ +DG+           
Sbjct: 557 GYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK----------- 604

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
                                H    Q +T      + DP+   I         +R   +
Sbjct: 605 --------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV 644

Query: 370 ASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKD 427
                  L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT +
Sbjct: 645 PEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPN 704

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y         +A+  G++       ++T    E +   +N+      
Sbjct: 705 DRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM----- 754

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           E + +  R              + + +TI         +RR +P
Sbjct: 755 ----------------ETIVREAR-------------DKGYVETI-------YHRRRSLP 778

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
            +              + R+   R+    R+ +N+                   +Q  + 
Sbjct: 779 DI--------------NSRNFNIRNF-AERTAINSP------------------IQGSAA 805

Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660
           DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    A  
Sbjct: 806 DILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA-- 863

Query: 661 LPLKAE 666
           +PL A+
Sbjct: 864 VPLVAD 869


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/529 (17%), Positives = 170/529 (32%), Gaps = 91/529 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAE----DVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56
           ID ET S   +    +         +   +  A  +   P           +P     + 
Sbjct: 362 IDTETDSLDPMRARLVGISLSVAPGEAAYLPLAHAYPGAP---------EQLPMAEVLER 412

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVG 113
           L+  LEN D   +  N+ ++R V     N  + I  +    +L         P +L ++ 
Sbjct: 413 LRPWLENADKPKLGQNAKYDRHV---FANAGVTIRGYAHDTLLESYVIEAHKPHSLDSLV 469

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               L        +++  +  K  T + +          A  +   Y   D  +T ++ +
Sbjct: 470 SRH-LGRDDTLSYEQVCGKGTKAITFDQV----------ALDVATRYSGEDADLTLQVHQ 518

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           RL P              E ++  + Q I   G  VD  L    +  +  +   L+ +  
Sbjct: 519 RLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQAF 578

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++   LF    L ++  T     +T + VL    +  P        
Sbjct: 579 ELAGG-AFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLP------ 631

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                    R  L     S+         P    P   R H   
Sbjct: 632 -------------------------RVILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNY 666

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IA +G  +  +D + IE R++A ++ 
Sbjct: 667 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIAPKGWLIASSDYSQIELRIMAHLSQ 726

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L AF  GED++  T A  F V P +V+ DQR + KV+   L Y   A     +A  
Sbjct: 727 DAGLLAAFAAGEDIHRATAAEIFGVTPLEVSSDQRRMAKVINFGLIYGMSAF---GLARN 783

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            GL  +     +    A   +     +    ++   E    +   G   
Sbjct: 784 LGLERSAAQLYIDRYFAR--YPGVAAYMERTRKLAAEQGYVETVFGRRL 830


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/606 (15%), Positives = 174/606 (28%), Gaps = 111/606 (18%)

Query: 46  DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           D      MP     ++LK  LE+  +  +  N  ++  V         PI   +  +  A
Sbjct: 396 DLAEG-QMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQVGITVAPIDDTML-MSYA 453

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
              GL         + +         K L+       T + +                 Y
Sbjct: 454 MHGGL-HGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKV----------PLSEAVPY 502

Query: 161 CKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  ++++ +P            + E+ +  +   +   G  VD      ++  
Sbjct: 503 AAEDADVTLRLWQQFKPALHRAQVTKVYETLERPMVAVLADMERAGIKVDRDTLSRMSNA 562

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+ +L  G   +    ++L   LF E GL      +T    T   VL   
Sbjct: 563 FSQKMAALEDEVYTL-VGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDL 621

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   ++ + R                                 S+           
Sbjct: 622 ATEHELPRRILDWRQL-------------------------------SKLKSTYTDALQD 650

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
              P   R H              ++DP+   I         +R   +A EGK LV  D 
Sbjct: 651 HINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGKTLVALDY 710

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +A       AF+ G+D++  T +  F+V   ++T + R   K +   + Y
Sbjct: 711 SQIELRILAHIADIPALKTAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                    +A    +  +     +      E +     +    +    EH   +   G 
Sbjct: 771 GISGF---GLARNLRIPRSEAQGFID--RYFERFPGIRAYMDDTKAFAKEHGYVETLFGR 825

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                    +   +  +       +A       G A    +R  + +          I  
Sbjct: 826 RIHTPNIGAKGPQAGFAA------RAAINAPIQGTAADVIRRAMIRMP-------AAIAE 872

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
           LP+   L   D                        L   + Q  ++D L E   +  ++ 
Sbjct: 873 LPAKMLLQVHDE-----------------------LLFEVDQG-AQDALIEAARSVMESA 908

Query: 622 YDIVLT 627
            D V+ 
Sbjct: 909 ADPVVH 914


>gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
 gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
          Length = 880

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 119/677 (17%), Positives = 219/677 (32%), Gaps = 171/677 (25%)

Query: 28  VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75
             ++        +    + D     V   D +  P+  + L K AL+  D+         
Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQKFLTKTALKTYDLKRT------ 379

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134
              VL + + +++P         LA+          +    +L  Q  +    E+  +  
Sbjct: 380 --KVLLSHYGIELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILLTDDEVYGKGA 435

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYL 188
           K         R  P   + +       +  +              +L+ L   EQ L ++
Sbjct: 436 K---------RALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFV 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V+      +    +     L QE+  L  G   +    ++L T LF + G
Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545

Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           L LE    T+T       VL     + P   ++   R   S+     +  L EA+ SDG+
Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIASDGK 604

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +                               H    Q +T      + DP+   I    
Sbjct: 605 I-------------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRL 633

Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F
Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVF 693

Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +     VT + R   K +   + Y         +A+  G++       ++T    E + 
Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             +N+                      E + +  R              + + +TI    
Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                +RR +P +              + R+   R+    R+ +N+              
Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799

Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649
                +Q  + DIL   M+N  +A         ++L VHDEIV E P+ +      L   
Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854

Query: 650 LMTSNPSWAKGLPLKAE 666
            M +    A  +PL A+
Sbjct: 855 TMEAAIELA--VPLVAD 869


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 113/672 (16%), Positives = 215/672 (31%), Gaps = 143/672 (21%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQV-----LKEALENTDVT 67
           D    G+      +  I   +G + + +      H     + +      L+  LEN    
Sbjct: 370 DTETTGLNPQTAKLVGISCCWGEEVNNIAYIPIEHKEGEQLSKEKVLEKLRPILENKCYP 429

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG- 126
            V  N+ F+R VL    N  I ++  +   +LA     P             S K+    
Sbjct: 430 KVFQNAKFDRLVL---LNQGIQLNGVVFDTMLASYVINPD-----------KSHKLSSLC 475

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------PLSS 180
           K+ +      +  E   ++ +            YC  D   T  + K L+      P+  
Sbjct: 476 KQYLTNISSQDYLELKINKQQTIADLDITQVANYCGMDAYSTFLLVKPLKKRLAEIPILE 535

Query: 181 K-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           K     EQ L  +   + ++G  +D+   + L++   V    L++++         +   
Sbjct: 536 KLFLEVEQSLEKVLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEKIYEEAK-EKFNLES 594

Query: 236 LEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            ++L   LF    L  +   +     +T   +L   K   P    +              
Sbjct: 595 PKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLKGDHPIIDYLLK------------ 642

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                              +   S+         P     +  R H   +Q +T      
Sbjct: 643 -------------------YRTLSKLQSTYIDNLPTLVSNQTHRIHTSFNQSVTSTGRLS 683

Query: 351 TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +S P+   I     +S  +R   I+ +   LV AD + IE R+LA ++ E   +KA+   
Sbjct: 684 SSKPNLQNIPIRTELSRKIRKAFISPKKWLLVSADYSQIELRILAHLSQEPLLVKAYCDC 743

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +D++  +    F+    ++T ++R +GK +   + Y  G+   Q+ A   G+        
Sbjct: 744 QDIHTLSAQLLFDK--EEITIEERNLGKTINFGVIYGMGS---QRFAREAGVTPTKGKDF 798

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +K     + ++    F     EN    AI   ++ T   R +                  
Sbjct: 799 IKKYH--QRYKKVFQFL----ENLKIEAITKGYVTTILGRRR------------------ 834

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                                   Y     ++L     +       ++  +    + +  
Sbjct: 835 ------------------------YFNFYSDSLR----NLYGCNPDEINLDELKYSYSDS 866

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETP-DTD 640
           QL R            +Q  S DI+   M+   K        ++L VHDE+V E P +  
Sbjct: 867 QLLRSAANAP------IQGSSADIIKVAMIKIEKLLRNYQAKLLLQVHDELVFEIPLEEL 920

Query: 641 EFNASMLYHLMT 652
           E   S +  +M 
Sbjct: 921 EELQSEIKQIME 932


>gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83]
 gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83]
          Length = 926

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/619 (15%), Positives = 195/619 (31%), Gaps = 101/619 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKEA 60
             D ET S   L        A  V + L A   +           D  +      +L+  
Sbjct: 357 SFDTETDSKDALR-------ANIVAITLCA---ESGRAFFIPLPEDEEIGKRRLDLLRPL 406

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
             +T +  V  N  ++  VL       I +   +   ++A     P              
Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY---GIEVRGQLFDTMIAHYLLFPD-----------LR 452

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRLEPL 178
             M+E  E +  +C     + +    +  H  +   +   +Y   D  +T ++++RL  +
Sbjct: 453 HNMDEMAETLLGYCTVHYSDLVGSDKQEVHIRQVPLQNLADYAMEDADITWQLYERLNAM 512

Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            S+          E  L  +   +   G  +D  +       +  E  +++ E+  L  G
Sbjct: 513 LSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYRLA-G 571

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +     ++ T LF E  +      T++    T + +L   ++  P            
Sbjct: 572 HSFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIV---------- 621

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                R  L + G  +         P    P   + H   +Q +
Sbjct: 622 ---------------------RLILDYRGIKKLLSTYVEALPEMRYP-DGKLHTSFNQTV 659

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQW 397
                  +S+P+   I         +R+  +        + AD + IE R++A ++ ++ 
Sbjct: 660 ATTGRLSSSNPNLQNIPIRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDES 719

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF  GED++  T ++ + +   +VT D R   K     + Y   A    +      +
Sbjct: 720 LIQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSE---RLNI 776

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +      L++   A           +   +     A    ++ T   R K+  R  +S  
Sbjct: 777 SRTEAKALIEGYFASYP------GVKAYMDRSIAEAKRQGYVTTLFGR-KRFLRDINSAN 829

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGN 575
           + +     +        G A    K   +  ++ +  +  L   ++L     L +    N
Sbjct: 830 AVVRGYAERNAINAPIQGSAADLIKLAMIR-IHEEITERKLRSRMILQVHDELNF----N 884

Query: 576 NRSYLNTTTRQLTREYTYG 594
                    R+L R    G
Sbjct: 885 VLRPEAAEVRELVRSCMEG 903


>gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 146/486 (30%), Gaps = 128/486 (26%)

Query: 165  VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            V                E  L  +   + + G  VD      L ++      +L +++  
Sbjct: 653  VEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFTRRSQELAEQIYE 712

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281
            L  G   +    ++L   LF   GL +   T+T       VL +     P A  V   R 
Sbjct: 713  LA-GQTFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAARHPIAELVLEYRS 771

Query: 282  RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                     ++ L E +  DGR+                               H    Q
Sbjct: 772  LVKLQGTY-VDGLAEHIGPDGRI-------------------------------HTTFQQ 799

Query: 342  IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             +       ++ P+   I         +R   +A  G +LV AD + IE RVLA  +G+ 
Sbjct: 800  TVAATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDP 859

Query: 397  WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              ++AF  G+D++  T +  F V   QVT +QR + K +   L Y        +      
Sbjct: 860  GLVEAFAQGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDFGLARALRI-- 917

Query: 457  LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                             +  DA  F     E +P                          
Sbjct: 918  -----------------DRADARRFMERYFERYP-------------------------- 934

Query: 517  VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN- 575
               +   + +   +  + G+      RR                 +P  R  V+    N 
Sbjct: 935  --GVKRYMEETVRRARQQGEVTTLLGRR---------------RPVPEIRHRVFHIRQNA 977

Query: 576  NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVH 629
             R  +NT                   +Q  + DI+   M+   +A         IVL VH
Sbjct: 978  ERVAINTP------------------IQGTAADIMKLAMIRVHRALAEEGLRARIVLQVH 1019

Query: 630  DEIVCE 635
            DE++ E
Sbjct: 1020 DELLVE 1025


>gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259]
 gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259]
          Length = 907

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/504 (18%), Positives = 152/504 (30%), Gaps = 80/504 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVG 113
           +K  LE     IV  N  + R VL  C    I +       +L         P  L ++ 
Sbjct: 385 IKPLLEERAAKIVGQNLKYARHVLANC---GIALGGAADDTLLQSYVLEAHQPHELASLA 441

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                          L    C   T +          + A    GEY      VT  +  
Sbjct: 442 NRHL----------GLATLACDELTGKGAAR--IGFDQVAVERAGEYAAEQADVTLRVRG 489

Query: 174 RLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +L    +  ++L Y+ + I              G  +D AL    +  +  +  +L+Q  
Sbjct: 490 QLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLELEQRA 549

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
                G   +    +++   LF + GL +   T     +T +  L       P A     
Sbjct: 550 FQEA-GQPFNLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDHPIA----- 603

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                     R  L + G ++         P    P   R H  
Sbjct: 604 --------------------------RAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTS 637

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q         + +P+   I         +R   IA  G  LV AD + IE R++A ++
Sbjct: 638 YSQATAVTGRLASVEPNLQNIPARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLS 697

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L AF    D++  T A  F V    V+ +QR I KV+   L Y   A     +AS
Sbjct: 698 DDAGLLHAFANDLDIHTATAAEVFGVPLDAVSAEQRRIAKVINFGLIYGMSAF---GLAS 754

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L  +     +        +    N+    +E+       +   G           + 
Sbjct: 755 QLNLERSAAQAWID--RYFTRYPGVANYMLRTRESARAQGYVETVFGRRL-----YLPEI 807

Query: 514 HSRVSELWNELHQAFEQTIENGKA 537
           ++R  +      +A       G A
Sbjct: 808 NARNPQRRQGAERAAINAPMQGTA 831


>gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49]
          Length = 880

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 119/667 (17%), Positives = 222/667 (33%), Gaps = 163/667 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85
            ++  A+G D   + +   D +  P+  + L K AL+  D+            VL + + 
Sbjct: 337 EIVGLAWG-DSGQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144
           +++P         LA+          +    +L  Q  +    E+  +  K         
Sbjct: 388 IELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYC 198
           R  P   + ++      +  +     + ++L        L   EQ L ++   +   G  
Sbjct: 437 RALPEQEQLFKHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIK 496

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256
           V+      +    +     L QE+  L  G   +    ++L T LF + GL LE    T+
Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555

Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           T       VL     + P   ++   R   S+     +  L EA+ +DG+          
Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                 H    Q +T      + DP+   I         +R   
Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643

Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
           +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT 
Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A+  G++       ++T    E +   +N+     
Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM---- 754

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                            E + +  R              + + +TI         +RR +
Sbjct: 755 -----------------ETIVREAR-------------DKGYVETI-------YHRRRSL 777

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
           P +              + R+   R+    R+ +N+                   +Q  +
Sbjct: 778 PDI--------------NSRNFNIRNF-AERTAINSP------------------IQGSA 804

Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659
            DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    A 
Sbjct: 805 ADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA- 863

Query: 660 GLPLKAE 666
            +PL A+
Sbjct: 864 -VPLVAD 869


>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 891

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  +I + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDIKQT 475

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIQKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
 gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
          Length = 882

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 215/648 (33%), Gaps = 144/648 (22%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
           D  V+      D + +      ++  +PQ +K  L N ++    ++   +  +LK     
Sbjct: 334 DKRVLYVFLSLDGNEIYYV---NEDELPQ-IKTLLSNPEIKKHGYDLKEDYILLKPY--- 386

Query: 87  DIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           +I ++     + +A         ++ +    A+K  ++K++  ++L+ +  K +  + + 
Sbjct: 387 EIELNSMDFDITIAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLLGKGAKAKKFDEI- 445

Query: 144 DRNKPNHREAWRLFGEYCKGDVT-VTREIFKRLEPLSSK------EQELWYLDQTINDRG 196
                   +    +       V  V  ++ ++L+           E  L  +  ++   G
Sbjct: 446 ------EFDELSAYIGDILNTVNGVYLKMEEKLKETEMDGLFYHVEMPLVEVLGSMEYIG 499

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD    + L +       +L+ E+  L  G   +    ++L   LF + GL +   T+
Sbjct: 500 MKVDKDQLNELKEKFTTIINELENEIFELA-GEPFNINSPKQLGVVLFEKLGLPVIKKTK 558

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           T         +                      KL    E ++         ++    + 
Sbjct: 559 TGYSTNAEVLE----------------------KLRDKHEIIDK------ITEYRQIVKL 590

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                        P+  R H   +Q IT      +++P+   I         +R   +A 
Sbjct: 591 NSTYVEGLLKIINPKTGRIHSSFNQTITTTGRISSTEPNMQNIPVKTEMGRDIRKVFVAD 650

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           E  KLV AD + +E RVLA M+G++  + AF+ GED++  T ++ F+V    VT  QR  
Sbjct: 651 ENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKDVTSKQRIE 710

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y        +      + + T    + +                       
Sbjct: 711 AKAINFGIIYGKTDFGLSQ---DLNIPVATAKAYIDSYF--------------------- 746

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                                K+ ++ E    + +A E   E G A     RR     Y+
Sbjct: 747 --------------------NKYPKIKEF---MDEAVESATETGYATTILNRRR----YI 779

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
            + K +  ++   G+          R  +N                    +Q  + DI+ 
Sbjct: 780 PEIKASNFIVRNQGK----------RFAMNAP------------------IQGSAADIIK 811

Query: 612 EGMMNATKAG------YDIVLTVHDEIVCE-TPDTDEFNASMLYHLMT 652
             M+N             ++L VHDE++ E   +  E    ++   M 
Sbjct: 812 VAMVNVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVREEME 859


>gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/623 (14%), Positives = 195/623 (31%), Gaps = 135/623 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           LE+        +    R ++   +   + +      L++A     PS + + V    K  
Sbjct: 363 LEDESKKKSVFDGK--RAIVSLKWQ-GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTK 419

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                +  E +  + KG   +   ++    H           +       +  ++    +
Sbjct: 420 QYVGVQSDEAV--YGKGAKQKVPDEQVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFT 477

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VDV     + + +  +  +++QE+  L  G   +    ++L
Sbjct: 478 DLELPLSTILAEMEFAGVKVDVERLKEMGEELAEQLKEVEQEIYRLA-GQEFNINSPKQL 536

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL           ++ + R    +     +  L++
Sbjct: 537 GVILFEKLQLPVLKKTKTGYSTSAEVLEKLAPQHEIVEKILHYRQL-GKLQSTYIEGLLK 595

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++ D                               ++ H   +Q +T      +++P+ 
Sbjct: 596 VVHRD------------------------------TNKVHTIFNQALTQTGRLSSTEPNL 625

Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I SE    +  AD + IE RVLA +A ++  + AF  G D++ 
Sbjct: 626 QNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHT 685

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+V+  +VT + R   K +   + Y        +      +     A  +K   
Sbjct: 686 KTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLNITRKEAAEFIKRYF 742

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                    +    V +   ++ Q  +Q
Sbjct: 743 -----------------------------------------EIFPGVKQYMKDIVQEAKQ 761

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             +     +  +RR +P +  +           + RS         R+ +NT        
Sbjct: 762 --KGYVTTLLHRRRYLPDITSRNF---------NLRSFA------ERTAMNTP------- 797

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+ + M++             ++L VHDE++ E P  +    
Sbjct: 798 -----------IQGSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERL 846

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666
             +   +M +       +PLK +
Sbjct: 847 QQIVPEVMENAVQ--LRVPLKVD 867


>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
 gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/635 (14%), Positives = 203/635 (31%), Gaps = 147/635 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS----ALK 110
           +  K+  E+     + +++      L+      I +      L++A     PS       
Sbjct: 356 ETFKKWAEDESKKKIVYDAKRTEVSLRHH---GIHLKGVEFDLLIASYIINPSESIEDFA 412

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH---REAWRLFGEYCKGDVTV 167
           +V +    +  + ++     A + KG   +         H   + A          D   
Sbjct: 413 SVAKRHGYNGVQTDD-----AVYGKGAKRKIPAQEELAGHLARKAAALEALRDKLEDELK 467

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
               ++    L   E  L  +   +  +G  VD+     + + ++ +   +++ +  L  
Sbjct: 468 ENRQYELFYDL---EMPLSLILADMESQGVKVDLERLQAMGEQINQKLGDIEERIHELA- 523

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284
           G   +    ++L   LF + GL     T+T       VL   +       ++   R    
Sbjct: 524 GEAFNINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLEDKHEIIREILQYRQL-G 582

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     +  L++  +                               +  + H   +Q +T
Sbjct: 583 KLQSTYIEGLLKVTDK------------------------------KTGKVHTRFNQALT 612

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398
                 ++DP+   I         +R   + SE G  +  AD + IE RVLA +AG++  
Sbjct: 613 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKGWVIFAADYSQIELRVLAHIAGDEKL 672

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF   +D++  T    F+V+  +VT + R   K +   + Y        +   + G+ 
Sbjct: 673 IEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAVNFGIVYGISDYGLSQ---SLGIT 729

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +        + ++    R   ++  + A +  ++ T   R     R+    ++
Sbjct: 730 RKEAGQFID------RYLESYPGVREYMDDIIQEAKQKGYVSTLLHR-----RRYLPEIT 778

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                                          R+   R     R+
Sbjct: 779 S----------------------------------------------RNFNLRSF-AERT 791

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
            +NT                   +Q  + D++ + M++             ++L+VHDE+
Sbjct: 792 AMNTP------------------IQGSAADVIKKAMIDMADRLREEGLQSRLLLSVHDEL 833

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E P+ + E    ++  +M +       +PLK +
Sbjct: 834 IFEAPEEEIEILKRIVPDVMENTVD--LDVPLKVD 866


>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
 gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
          Length = 910

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 101/651 (15%), Positives = 205/651 (31%), Gaps = 136/651 (20%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           A    D      D        +    A L +  V    H +    + + A       +  
Sbjct: 364 AIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAK---SAMHALRGRGWTLGG 420

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                 LA     P   +      +L+   +++    +  A+    +  + +        
Sbjct: 421 LTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQLSLLDDEDAVDAETARAE 480

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
               R   +     +    E  +    L+  E  L  +  T+ + G  VD      L + 
Sbjct: 481 MLRARAVLDLAAA-LDAELEQIESTALLTDMELPLLGVLATLEEAGIAVDCEQLEALQRQ 539

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
              +  +  +    +  G   +    ++L+  LF E  +     T+T       + + L 
Sbjct: 540 FADKVAQAAEAAYGVI-GKQINLGSPKQLQVVLFDELDMPKTKRTKTGYTTDADALESLF 598

Query: 271 PQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            +    F   + A R A    + ++ L++++  DGR+  T                    
Sbjct: 599 EKTQHPFLEHLLAHRDATRLKVTVDGLLKSVADDGRIHTT-------------------- 638

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADL 381
                       +Q I       +++P+   I         +R   +   G  +L+ AD 
Sbjct: 639 -----------FNQTIAATGRLSSTEPNLQNIPIRTDTGRMIRDTFVVGPGYAELMTADY 687

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R++A ++G++  ++AF +GEDL+    +++F++  A+V+ + R   K M   L Y
Sbjct: 688 SQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAMSYGLAY 747

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +     +++   ++                                           
Sbjct: 748 GLSSY---GLSAQLKISTAEA--------------------------------------- 765

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                K+      SR   + + L++  EQ  + G       RR                 
Sbjct: 766 -----KEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLFGRRRY--------------- 805

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-- 619
           LP                L+++ RQ  RE      L   I Q  + DI+   M++  +  
Sbjct: 806 LP---------------DLDSSNRQ-RREAAERMALNAPI-QGTAADIIKVAMIDVHRGI 848

Query: 620 ----AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
                   ++L +HDE+V E  + +      L    M++    A  +PL  
Sbjct: 849 REAGLRSRMLLQIHDELVFEVAEGERDALEQLAREKMSAAI--ALSVPLDV 897


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
          Length = 888

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/526 (16%), Positives = 171/526 (32%), Gaps = 128/526 (24%)

Query: 156 LFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           +F      D+ + +     L  L  + E+ L  +   +   G  VD      LN+     
Sbjct: 465 VFAISALYDIFIEKAKENNLISLYENVEKPLVKVLADMEKTGVLVDRNKIIELNEEYSKL 524

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TP 271
               +Q++  L  G V +    ++L   LF + GL +   T+T     +   +KL     
Sbjct: 525 AYLYEQKVYELA-GEVFNLNSPKQLGVILFEKIGLPVVKKTKTGYSTDVEVLEKLSKKHE 583

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +   R   ++     L+ ++E +  DGR+R + +                      
Sbjct: 584 IVDYILKYR-SLNKLISTYLDGILEYIMDDGRVRTSFK---------------------- 620

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
                    Q+IT      + DP+   I         +R   +A + K  + AD + IE 
Sbjct: 621 ---------QMITATGRLSSVDPNLQNIPIRSEEGKNIRKVFVADKNKVFIDADYSQIEL 671

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA ++ +   + +F+   D++  T +  F V   +VT +QR   K +   + Y     
Sbjct: 672 RVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKAVNFGIVYGISDY 731

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               ++    +  N     +        + +     +   E     A +D F+       
Sbjct: 732 ---GLSKDLNITRNEARQYIDG------YLNTYPSIKSYMEEIVNKAKKDGFV------- 775

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                                           I  ++R +P +              + +
Sbjct: 776 ------------------------------TTILDRKRYIPEI--------------NSK 791

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKA 620
           +   R  G  R  LNT                   +Q  + DI+   M      +   K 
Sbjct: 792 NFNIRSFGE-RIALNTP------------------IQGSAADIIKLAMIKVYERLKIEKV 832

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
              ++L +HDE++ E  ++++     +      N  +   LPLK +
Sbjct: 833 NAKLILQIHDELIVECEESEKETVKKILKNSMEN-VYKLDLPLKVD 877


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/623 (14%), Positives = 195/623 (31%), Gaps = 135/623 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           LE+        +    R ++   +   + +      L++A     PS + + V    K  
Sbjct: 363 LEDESKKKSVFDGK--RAIVSLKWQ-GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTK 419

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                +  E +  + KG   +   ++    H           +       +  ++    +
Sbjct: 420 QYAGVQSDEAV--YGKGAKQKVPDEQVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFT 477

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VDV     + + +  +  +++QE+  L  G   +    ++L
Sbjct: 478 DLELPLSTILAEMEFAGVKVDVERLKEMGEELAEQLKEVEQEIYRLA-GQEFNINSPKQL 536

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL           ++ + R    +     +  L++
Sbjct: 537 GVILFEKLQLPVLKKTKTGYSTSAEVLEKLAPQHEIVEKILHYRQL-GKLQSTYIEGLLK 595

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++ D                               ++ H   +Q +T      +++P+ 
Sbjct: 596 VVHRD------------------------------TNKVHTIFNQALTQTGRLSSTEPNL 625

Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I SE    +  AD + IE RVLA +A ++  + AF  G D++ 
Sbjct: 626 QNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHT 685

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+V+  +VT + R   K +   + Y        +      +     A  +K   
Sbjct: 686 KTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLNITRKEAAEFIKRYF 742

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                    +    V +   ++ Q  +Q
Sbjct: 743 -----------------------------------------EIFPGVKQYMKDIVQEAKQ 761

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             +     +  +RR +P +  +           + RS         R+ +NT        
Sbjct: 762 --KGYVTTLLHRRRYLPDITSRNF---------NLRSFA------ERTAMNTP------- 797

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+ + M++             ++L VHDE++ E P  +    
Sbjct: 798 -----------IQGSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERL 846

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666
             +   +M +       +PLK +
Sbjct: 847 QQIVPEVMENAVQ--LRVPLKVD 867


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 119/704 (16%), Positives = 197/704 (27%), Gaps = 204/704 (28%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV---- 56
           +D ET S   L             ++  +              HD       +P      
Sbjct: 345 LDTETTSLDPLA----------ARIVGISLAVAPGEAAYLPLAHDYPGVPAQLPCDEVLA 394

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            LK  LE+     +  +  +++ VL                           AL  V   
Sbjct: 395 RLKSWLESPGHAKIGQHLKYDQHVLANH----------------------GIALAGVRHD 432

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR------ 169
             L S  +E GK+ +     G     L  R+       +          +   +      
Sbjct: 433 TLLQSYVLESGKDGVR----GHDLGQLATRHLGLATIPYEALCGKGANQIGFEQVAIGQA 488

Query: 170 --------EIFKRLEPLSS-------------KEQELWYLDQ--TINDRGYCVDVALAHT 206
                   ++ +RL  +                E E+   D    +  +G  +D  L   
Sbjct: 489 AEYAAEDADLCQRLHAVLYPQIVADAGLARVYAEIEIPVRDILFRMERQGVLIDGELLTR 548

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRV 262
            +  +      L+    +   G   +    ++L   LF + GL +       T +T + V
Sbjct: 549 QSHEIGKRLLDLEARAHA-AAGQPFNVNSPKQLAEILFDKLGLPVKKKTPSGTPSTDEEV 607

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           LS      P    +  +R  A                               +       
Sbjct: 608 LSELALDYPLPKILLESRQLA-------------------------------KLKGTYTD 636

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
             P        R H    Q +       +SDP+   I         +R+  IA  G  LV
Sbjct: 637 KLPKMVNAGTGRVHTSYAQAVAVTGRLASSDPNLQNIPVRTAEGRRIRAAFIAPPGSSLV 696

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ +   L+AF  GED++  T A  F V P  V  DQR + KV+  
Sbjct: 697 SADYSQIELRIMAHLSEDARLLEAFAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINF 756

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            L Y   A     +A    L        ++       +       R+M            
Sbjct: 757 GLIYGMSAF---GLARELDLERGAAQAYIE-----RYFARYPGVARYMATTRE------- 801

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                           +T    + +  R+               
Sbjct: 802 ------------------------------AARTQGYVETVFGRR--------------- 816

Query: 558 LILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-- 614
             L LP  RS    R  G  R+ +N                     Q  + D++   M  
Sbjct: 817 --LWLPEIRSSQAGRRQGAERAAINAPM------------------QGSAADLIKSAMIA 856

Query: 615 ----MNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653
               ++A +    +++ VHDE+V E PD +       L  LMT 
Sbjct: 857 VQGWLDAERLQTRLLMQVHDELVLEVPDDELARVRGELPRLMTD 900


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 96/562 (17%), Positives = 178/562 (31%), Gaps = 78/562 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV 112
           Q L   L +  +  + HN  ++  VLK+     + +   +   ++A     P   + K  
Sbjct: 384 QQLAPLLGDPQLLKLGHNLKYDLQVLKSH---GLELAAPLADSMIASYLIDPGRRSHKLD 440

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             + +L  +++    E+               R +            Y   DV  +R ++
Sbjct: 441 DLSSELLERQLTSFAEV----------SAGDRRPEAFAYVEPAAACRYSCQDVVASRLLW 490

Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +   P          L   E  L  +   +   G  VD A+   L +    E  +L+ ++
Sbjct: 491 ELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVDPAVLDELEREFGRELARLESKI 550

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVF 277
             L  G   +     +L   L+    L     T+     +T  R L            V 
Sbjct: 551 AELA-GESFNINSPRQLGEVLYERLKLPHGRKTKGKTGYSTDYRELERLAAYHDLPAAVI 609

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           ++R                                 S+              P   R H 
Sbjct: 610 SHRNL-------------------------------SKLKSTYVDKLATLIDPADGRVHT 638

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +Q +T      +S+P+   I         +R+  +A+ G   + AD + I+ RVLA  
Sbjct: 639 TFNQTVTATGRLSSSNPNLQNIPIRTPEGRRLRAAFVAAAGHLFLAADYSQIDLRVLAHY 698

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+    +AF   +D++  T A  F V    V+ D R + K +   + Y   A    +  
Sbjct: 699 SGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGMSAFGLAEQL 758

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             +     TF            +E  +   R+MQE   E A  D ++GT   R ++   +
Sbjct: 759 RCSRKEAQTF--------IDRYFELYQGVLRFMQE-IVEQARRDGWVGTLLNR-RRPLPE 808

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYR 571
            +S          +    T   G A    K   +      ++       +L     L++ 
Sbjct: 809 INSGNKMRREFAERTAINTPIQGTAADIIKLAAIACDRALREAGCRSEALLQIHDELIFE 868

Query: 572 DVGNNRSYLNTTTRQLTREYTY 593
              +  + +    RQ   E   
Sbjct: 869 VPQDELAQVGPLIRQAMEEVME 890


>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              K+ L + ++     ++   R ++   +N  I I      L++A     P+       
Sbjct: 370 DAFKDWLADGEMRKHTFDAK--RAIVALKWN-GIDIQGVDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +         ++  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              K+ L + ++     ++   R ++   +N  I I      L++A     P+       
Sbjct: 370 DAFKDWLADGEMRKHTFDAK--RAIVALKWN-GIDIQGVDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +         ++  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87]
 gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87]
          Length = 887

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/654 (15%), Positives = 202/654 (30%), Gaps = 138/654 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++ F F  DD    +     D    Q L + LE+ +     +++  +  V     N+DI 
Sbjct: 344 ILKFGFYADDS--HVVINAEDIKQYQDLVQWLEDKNTIKTVYDAK-KTYVAAHRLNIDI- 399

Query: 90  IHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                  ++L+     P  ++  V   + L  Q     K+ ++ + KG+ H+   +    
Sbjct: 400 -QNVQFDVMLSSYIIDPSRSIDDVKSVVSLYGQ--NYVKDNVSVYGKGKKHQVPEEEVLN 456

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            H  +        K ++    E + ++E L   E  L  +   + + G   DV     + 
Sbjct: 457 KHVASITEAIANSKPEMEAQLEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLKQME 516

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265
             +  +   L + +     G   +    ++L   LF    L +   T+T       VL  
Sbjct: 517 NEIQEKLDVLIKNIHE-AAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQ 575

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +   P    +   R                                 S+          
Sbjct: 576 LQGEHPIIEHILEYRQL-------------------------------SKLQSTYVEGLQ 604

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVA 379
              + +  R H   +Q +       + DP+   I         +R       +   ++ A
Sbjct: 605 K-VISKDQRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPTDKDSVILSA 663

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +  ++   +AF  G D++  T  + FNV   +V    R   K +   +
Sbjct: 664 DYSQIELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSLMRRQAKAVNFGI 723

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y        +   + G+        +       ++  +    +    +  + A  + ++
Sbjct: 724 VYGISDYGLSQ---SLGITRKKAKAFID------DYLASFPGVKQYMSDIVKDAKAEGYV 774

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T                                        +RR +P +  +       
Sbjct: 775 ETLL-------------------------------------HRRRYIPDITSRNF----- 792

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN--- 616
               + RS         R+ +NT                   +Q  + DI+   M+    
Sbjct: 793 ----NLRSFA------ERTAMNTP------------------IQGSAADIIKLAMVKFYE 824

Query: 617 -ATKAGYD--IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                 Y   ++L VHDE++ E P ++ E  +  +  +M         +PLK +
Sbjct: 825 KVKDTNYHATLLLQVHDELIFELPKSEVEDFSKFVEEIMEQALD--LDVPLKVD 876


>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
 gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQT 475

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
 gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
          Length = 959

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/635 (15%), Positives = 194/635 (30%), Gaps = 136/635 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LEN ++  V  N  ++ +VLK      I +  +  T++++                
Sbjct: 427 LKPVLENRNILKVGQNIKYDLSVLKRY---GIDVAPYDDTMLMSYVV-----------EG 472

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE---YCKGDVTVTREIFK 173
            L    M+E  +L          + +    K      +    E   Y   D  VT  ++ 
Sbjct: 473 GLHGHGMDELSQL-HLGHTPIPFKQVAGSGKTLKSFKFVALKEATQYAAEDADVTLRLWH 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P   +          E+ +      +   G  VD  +   L+Q        ++QE  
Sbjct: 532 VLKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLRNLSQDFGTRMNAIEQEAH 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRMR 282
           +   G   +    ++L    F E  L     T +      +   + +             
Sbjct: 592 AH-LGRPFNLNSPQQLGVVFFDEMKLPGGKRTASGQWATDVKVLEDIAE----------- 639

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             ++      TL + +         L +   ++              P+  R H      
Sbjct: 640 -GKNGTGAGQTLAKLL---------LDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHLA 689

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            T      +++P+   I         +R+  IA  G KL+ AD + IE R+LA +   + 
Sbjct: 690 STTTGRLASNEPNLQNIPIRTGEGRKIRTAFIAKPGCKLISADYSQIELRLLAHIGDIEQ 749

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             KAF  G+D++  T +  F V  A +T + R   K +   + Y         +A+  G+
Sbjct: 750 LKKAFSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINFGIIYGISGF---GLANQLGI 806

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                   A  + +   E  P               +K          
Sbjct: 807 DQGE----------------ASRYIKTYFERFP--------------GIKDYMDATKQ-- 834

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                              +D   +  ++  GR +   ++    
Sbjct: 835 ---------------------------------FLRDNGFVQTLM--GRKIHIPEINGKG 859

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCE 635
             +     +        G   + I +A+ R            AG+   ++L VHDE++ E
Sbjct: 860 GAIKAFAERAAINAPIQGTAADIIRRAMMR-----MQPRLDAAGFTTRMLLQVHDELIFE 914

Query: 636 TPDTDEFNAS-MLYHLM--TSNPSWAKGLPLKAEG 667
            P+ +      ++  +M   + P+    +PL  E 
Sbjct: 915 APEAEVAAVIPLIQEVMQNAALPAVQISVPLVVEA 949


>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
 gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
          Length = 921

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/534 (17%), Positives = 162/534 (30%), Gaps = 71/534 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + +K   E+  V  +  N  F+  VL     + I  H     +      GL         
Sbjct: 395 ERIKALCEDPSVLKIGQNLKFDMIVLGE-RGISIAPHDDTIVMSFDLDAGL-HGHGMDEL 452

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A    S      KE++    K              H    +    Y   D  VT  ++KR
Sbjct: 453 AATHLSHTCLAFKEVVGTGKKQ----------LGFHEVDLKTATRYAAEDADVTLRLWKR 502

Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +     EQ           L  +   +  RG  VD      L+     +   L+ E+ +
Sbjct: 503 FKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERLSQLSTEFAGQIAGLEGEIHT 562

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRMRA 283
           L  G   +    ++L   LF   GL      ++      ++  ++L     +        
Sbjct: 563 LA-GTPFTIGSPKQLGEILFDRLGLKGGRKGKSGVYSTDVTELERLARDGGEEI------ 615

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                               +R  L++   S+           Q  P+  R H       
Sbjct: 616 --------------------VRKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSLTG 655

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                  +++P+   I         +R   IA +G  L+ AD + IE R+ A MA     
Sbjct: 656 AQTGRLSSTEPNLQNIPIRTEVGRQLREAFIAEDGHVLIAADYSQIELRLAAHMADVPAL 715

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             AF  G+D++  T    F     +V +D R   K +  A+ Y         +A    ++
Sbjct: 716 RDAFANGDDIHSLTAKELFG----EVNRDTRGRAKTINFAILYGIS---RWGLAGRLDVS 768

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +    ++      E +     +      +  E      F  T   R K  + +  SR  
Sbjct: 769 ADEAQAMID--RYFERFPGINRYIAETLSSVREKG----FTETLFGR-KTHFPRIASRNQ 821

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPL--VYMKKDKNNLILMLPSGRSLVY 570
                  +A       G +    KR  V +          ++ ++L     LV+
Sbjct: 822 GERQGAERAAINAPIQGTSADIIKRAMVRMEPALAAAGLGHVRMLLQVHDELVF 875


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 114/608 (18%), Positives = 190/608 (31%), Gaps = 154/608 (25%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 336 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 392

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 393 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 445

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 446 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 504

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 505 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 533

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T        DP+   I     +   
Sbjct: 534 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLCCCDPNLQNIPVRTPLGQR 593

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 594 IRRGFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 653

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++ +  +  +        +E+A+ F  
Sbjct: 654 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 694

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                       Q   +V           E+T+E G+    R+ 
Sbjct: 695 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 718

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L   ++   +L   + S R          R   N                    VQ
Sbjct: 719 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 754

Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
             + D++   M        + G  ++L VHDE+V E P       + L   +M      A
Sbjct: 755 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 814

Query: 659 KGLPLKAE 666
             +PL+ E
Sbjct: 815 --VPLEVE 820


>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
 gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
 gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
          Length = 942

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 151/474 (31%), Gaps = 64/474 (13%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL 105
                V+   L     N      AHN+ F+  VL       I +      T++ A   G 
Sbjct: 402 VPCGEVVTA-LAPFFANPQQPKFAHNAKFDMEVLA---GAGIKVSGLAFDTMIAAAMLGK 457

Query: 106 PSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG----EY 160
              LK +    LKL        ++LI R  K  +   +       +  A  L+     E 
Sbjct: 458 RQGLKDLAFYELKLPEPP-TTIEDLIGRGNKQISFAEVPVEQAAPYAAADALYTLRLTER 516

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +  +     +      +   E  L  +   +   G  +D      L +        L +
Sbjct: 517 LQRQLEAEPALHDLYYRV---ELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVE 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL--------HLEDLTETTCQRVLSSNKKLTPQ 272
            +     G   +    ++L   LF   G+         L+    +    VL    +L P 
Sbjct: 574 RIYQQAGG-PFNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPI 632

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A  +   R                                 ++         P    PR 
Sbjct: 633 AADILTYRQL-------------------------------TKLKSTYIDALPDLVNPRT 661

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q+        +++P+   I         +R   +A  G + V AD + IE R
Sbjct: 662 GRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYSQIELR 721

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA M+G++  + AF+ G D++  T +R F V P  V K+QR + K +   + Y   A  
Sbjct: 722 VLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAF- 780

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +A   G+  +    L+    A  ++     +     E   +H       G 
Sbjct: 781 --GLAQRLGIERDLARQLIDNLFA--QFPGIRRYIDQTLEFGRQHGYVQTLFGR 830



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 598 TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHL 650
               +Q  + D++   M+N  +A         ++L VHDE++ E P+ + E  A +L  +
Sbjct: 852 INAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDEVEPAARLLRDV 911

Query: 651 MT 652
           M+
Sbjct: 912 MS 913


>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
 gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
 gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDVQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I I      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDIQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 111/687 (16%), Positives = 202/687 (29%), Gaps = 154/687 (22%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEAL 61
           +  D     +        ++  +   +          H        +P+      LK  L
Sbjct: 344 TSFDTETTSLDPMV--AQIVGISLSTEPGSAAYIPVAHRGPDAPEQLPRDEVLAKLKPWL 401

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSS 120
           E+ +   V  +  ++  VL    N +I ++     TL+ +              AL+   
Sbjct: 402 ESAERRKVGQHLKYDAQVLA---NYEIALNGIEHDTLLESYVLESHRTHDMDSLALRHLG 458

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  + +E+  +  +                        Y   D  +T ++   + P  +
Sbjct: 459 VKTIKYEEVAGKGAQQ----------IGFDEVPLETAAAYAAEDADITLQLHLAMYPQVA 508

Query: 181 KEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +E  L  +   I              G  +D A     +  + V   +L++E   L  G 
Sbjct: 509 REPGLKRVYAEIEMPVSLVLRRMERTGVLIDSARLDKQSHEIAVRLIELEREAYELAGG- 567

Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++    F +  L +         +T + VL    +  P    +  +R     
Sbjct: 568 EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR----- 622

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                     G S+         P     R  R H    Q +  
Sbjct: 623 --------------------------GLSKLKSTYTDKLPRMINARTGRVHTNYAQAVAV 656

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                ++DP+   I         +R   IAS G ++V AD + IE R++A ++ ++  L+
Sbjct: 657 TGRLASNDPNLQNIPVRTAEGRRIREAFIASPGCRIVSADYSQIELRIMAHISEDESLLR 716

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  GED++  T A  F V P +V+ DQR I KV+   L Y   A     +AS  G+  +
Sbjct: 717 AFSQGEDIHRATAAEVFGVTPLEVSNDQRRIAKVINFGLIYGMSAF---GLASNLGITRD 773

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +    A   +    N+    +    +    +   G           + +      
Sbjct: 774 AAKLYIDRYFAR--YPGVANYMETTRAVAKDKGYVETVFGRRL-----WLPEINGGNGPR 826

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +A       G A    K   + +         L                      
Sbjct: 827 RQAAERAAINAPMQGTAADLIKLSMIAV------DGWLE--------------------- 859

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                                     RD L   M+          + VHDE+V E P+ +
Sbjct: 860 --------------------------RDKLRSRMI----------MQVHDELVLEVPEDE 883

Query: 641 -EFNASMLYHLMTSNPSWAKGLPLKAE 666
                  L  +M+        +PL AE
Sbjct: 884 LALVREKLPEMMSGVAK--LKVPLVAE 908


>gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
 gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
          Length = 864

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 102/633 (16%), Positives = 191/633 (30%), Gaps = 160/633 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+T +  + H+  F R VL+    +D    R     +LA        L++     
Sbjct: 366 LKQILEDTAIYKITHDGKFTRNVLRQ-LGID---FRCQFDTMLAAYL-----LESSKPRY 416

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRL 175
            +    ME   + ++              + P+  E    LF      D  +   +  +L
Sbjct: 417 DIPILVMEYLGKTMS--------------DIPSFDEKTSYLFELKKIMDEKIKDCLMDKL 462

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
                 E     +   +   G  VD A    L++    +   L +E+  L  G   +   
Sbjct: 463 --FYEVEMPFSVVLADMEHAGIKVDFAKLQELSERFGKKLAALTEEIYDLA-GTEFNINS 519

Query: 236 LEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF +  L +   T+T       VL   +   P   ++   R            
Sbjct: 520 PKQLGEILFEKLSLPVIKRTKTGYSTDAEVLEKLRPSHPIIEKILEYRFLM--------- 570

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                                 +               +  R +   +Q +T      ++
Sbjct: 571 ----------------------KMKSTYADGLSALVDKKTGRIYTSFNQTVTSTGRISST 608

Query: 353 DPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           +P+   I         +R    +   G  L+  D + IE RVLA M+ +   ++AF +GE
Sbjct: 609 EPNLQNIPVKTEEGKHIRGVFTSDGPGHVLLSGDYSQIELRVLAHMSQDPGLIEAFVSGE 668

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T +  F V P +VT   R   K +   + Y         +A   G++        
Sbjct: 669 DIHRRTASEVFGVPPEEVTPLLRDKAKAVNFGIIYGISDY---GLAQNLGISNQEA---- 721

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                   K+      +R   + + + +
Sbjct: 722 ----------------------------------------KEYIDAYFARYPGVRDYIRE 741

Query: 527 AFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                   G    +  +RR +P +  +             RS         R+ +NT   
Sbjct: 742 TIRSAKALGYVTTLLNRRRYIPDINSRNYH---------LRSFA------ERTAVNTP-- 784

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+              I+L VHDE++ + P+ 
Sbjct: 785 ----------------IQGSAADIIKIAMVKVHDNLRQNNLKAKILLQVHDELILDVPEE 828

Query: 640 DEFNASMLYHL-MTSNPSWAKGLPLKAE---GY 668
           +      +    M +       +PL  +   GY
Sbjct: 829 ELTAVKEILKQHMENAIP--LRVPLVVDFKQGY 859


>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I I      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDIQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330]
          Length = 880

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 118/667 (17%), Positives = 220/667 (32%), Gaps = 163/667 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFN 85
            ++  A+G D   + +   D +  P+  + L + AL+  D+            VL + + 
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLIKTALKTYDLKRT--------KVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144
           +++P         LA+          +    +L  Q  +    E+  +  K         
Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436

Query: 145 RNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYC 198
           R  P   + +       +  +              +L+ L   EQ L ++   +   G  
Sbjct: 437 RALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIK 496

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256
           V+      +    +     L QE+  L  G   +    ++L T LF + GL LE    T+
Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555

Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           T       VL     + P   ++   R   S+     +  L EA+ +DG+          
Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                 H    Q +T      + DP+   I         +R   
Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643

Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
           +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT 
Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A+  G++       ++T    E +   +N+     
Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM---- 754

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                            E + +  R              + + +TI         +RR +
Sbjct: 755 -----------------ETIVREAR-------------DKGYVETI-------YHRRRSL 777

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
           P +              + R+   R+    R+ +N+                   +Q  +
Sbjct: 778 PDI--------------NSRNFNIRNF-AERTAINSP------------------IQGSA 804

Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659
            DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    A 
Sbjct: 805 ADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA- 863

Query: 660 GLPLKAE 666
            +PL A+
Sbjct: 864 -VPLVAD 869


>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              K+ L + ++     ++   R ++   +N  I I      L++A     P+       
Sbjct: 370 DAFKDWLADGEMRKHTFDAK--RAIVALKWN-GIDIQGVDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +         ++  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A    ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKRKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
 gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
          Length = 891

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I I      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDIQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
 gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
          Length = 877

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              K+ L + ++     ++   R ++   +N  I I      L++A     P+       
Sbjct: 356 DAFKDWLADGEMRKHTFDAK--RAIVALKWN-GIDIQGVDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +         ++  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 866


>gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
 gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
          Length = 880

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 115/678 (16%), Positives = 211/678 (31%), Gaps = 173/678 (25%)

Query: 28  VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYF 75
             ++        +    + D     V   D +  P+    L + AL+  D+         
Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQDFLTKIALKTYDLKRT------ 379

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134
              VL + + +++P+        LA+          +    +L  Q  +    E+  +  
Sbjct: 380 --KVLLSHYGIELPVAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYL 188
           K         R  P   + +       +  +              +L+ L   EQ L ++
Sbjct: 436 K---------RALPEKEQLFEHLARKVQILLETEEPMQEQLRAHNQLDLLLEMEQPLAFV 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V+      +    +     L QE+  L  G   +    ++L T LF + G
Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545

Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           L LE    T+T       VL     + P   ++   R   S+     +  L EA+ +DG+
Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK 604

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
                                           H    Q +T      + DP+   I    
Sbjct: 605 -------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRL 633

Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F
Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVF 693

Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +     VT + R   K +   + Y         +A+  G++       ++T        
Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF------ 744

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG- 535
                                                  R   + N +     +  + G 
Sbjct: 745 --------------------------------------ERFPGIKNYMETIVREARDKGY 766

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              I  +RR +P +              + R+   R+    R+ +N+             
Sbjct: 767 VETIYHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-Y 648
                 +Q  + DIL   M+N  +A         ++L VHDEIV E P  +      L  
Sbjct: 800 ------IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVK 853

Query: 649 HLMTSNPSWAKGLPLKAE 666
             M +    A  +PL A+
Sbjct: 854 ETMEAAIKLA--VPLVAD 869


>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
 gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
          Length = 877

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQT 461

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
 gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
          Length = 971

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/634 (15%), Positives = 193/634 (30%), Gaps = 141/634 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEA 115
           LK  LEN  V  V  N+ ++  V+       I +  +  T++++    G          A
Sbjct: 446 LKVLLENPSVLKVLQNAKYDLAVMAR---RGIRVAPYDDTMLISYVLEGGLHGHGMDELA 502

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                      K +      G        R+            +Y   D  VT  +++ L
Sbjct: 503 RLHLGHDPVPFKSVA-----GTGKSQKSFRHVALKP-----ATQYAAEDADVTLRLWRLL 552

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P  ++E          + L  +   +   G  +D      L+    +   +L+ +   +
Sbjct: 553 KPRLAREGLSTVYETLERPLPAVLAEMETAGVRIDPDRLKRLSSEFGLRMAELEAQAHEI 612

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
             G   +     ++   LF E  L     T +    T   VL            + + R 
Sbjct: 613 A-GRPFNIGSPRQIGEILFGELNLPGGKKTASGQWGTDASVLEDLAATHALPRVLLDWRQ 671

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                           S+              P   R H     
Sbjct: 672 L-------------------------------SKLKGTYTDALTAAADPATDRVHTSYQL 700

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    +SDP+   I         +R   IA+ G  L+ AD + IE R+LA +    
Sbjct: 701 AAATTGRLASSDPNLQNIPIRTETGREIRQAFIAAPGHLLISADYSQIELRLLAHIGDIP 760

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF+ G D++  T +  F V    +  + R   K +   + Y   A     +A+  G
Sbjct: 761 ELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIVYGISAF---GLAAQLG 817

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                  +A  + +   +  P               ++    +  + 
Sbjct: 818 IDQG----------------EAGAYIKTYFDRFP--------------GIRTYMDKTRAE 847

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +                 + +  +R  +P ++               +S   R  G  
Sbjct: 848 VRQ-------------AGFVSTVFGRRIHIPAIHS--------------KSGAERQFGE- 879

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           R+ +N   +         G   + I +A+ R       +        ++L VHDE+V ET
Sbjct: 880 RAAINAPIQ---------GAAADIIRRAMIR---MPTALAEAGLTTRMLLQVHDELVFET 927

Query: 637 PDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEG 667
           P+ +   A +++  +M +   P+ A  +PL  + 
Sbjct: 928 PEAEADRAITVIKRVMETASDPAVALTVPLVVDA 961


>gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
 gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
          Length = 901

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 118/657 (17%), Positives = 205/657 (31%), Gaps = 147/657 (22%)

Query: 33  FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A    +      D         + L E L + ++  V H+       L    +    + 
Sbjct: 355 VALAAPNGEGAYLDVTTLTEDDERALGEWLADENIHKVGHSLK---KALHGLRSRGWRLA 411

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             +    LA     P   + K     L+        GKEL +   +G+    L D +  N
Sbjct: 412 GLVMDTELAAYLVRPGQRSFKLDDLVLRYL------GKELRSEGVEGDGQLSLLDTDSDN 465

Query: 150 HREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                 L            ++           L+  E  L  +   +   G  VD+ +  
Sbjct: 466 EIVRRELVRARAVLELSSALSAELAAIGATTLLADIELPLLSMITDLEAAGIAVDIDVLT 525

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
            L         +  ++  S+  G   +    ++L+  LF E G+     T+T       +
Sbjct: 526 ELEAHYANRVKQATEQAYSVI-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADA 584

Query: 266 NKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
            + L  +    F   +   R A      +  L++A+  DGR+  T               
Sbjct: 585 LQTLYEKTEHPFLQYLLEHRDATKLRSTVEGLIKAVADDGRIHTT--------------- 629

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KL 376
                           L Q IT      + DP+   I         +R   +  EG  +L
Sbjct: 630 ----------------LHQTITATGRLSSVDPNLQNIPVRTDEGRRIREAFVVGEGYAEL 673

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++ ++  ++AF +G D +  T AR F+V P +VT +QRA  K M 
Sbjct: 674 MTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVDPTEVTGEQRAKIKAMN 733

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y   A    +    +                                         
Sbjct: 734 YGLAYGLSAYGLSQQLRIS----------------------------------------- 752

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDK 555
                  E  +    +   R   + + LH   E+  + G    I  +RR +P +      
Sbjct: 753 ------TEEARALMDEYFLRFGGVRDYLHSVVERAAKEGYTETIFGRRRYLPDL------ 800

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                                     T+T +  RE      L   I Q  + DI+   M+
Sbjct: 801 --------------------------TSTNRQRREMAERMALNAPI-QGSAADIIKVAML 833

Query: 616 NATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
              +A         ++L VHDE++ E  D +      L    M S  ++   +PL+ 
Sbjct: 834 GVHRALAEAGLRSRVLLQVHDELMLEVADGEHAQVEELVRREMGS--AYELSVPLEV 888


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 108/648 (16%), Positives = 210/648 (32%), Gaps = 150/648 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I      D   +   D          L     N ++    +N   +   LK     +I 
Sbjct: 337 IIYIFISVDGEKIYYVDSNEVSK----LDSIFSNNEIKKYGYNLKDDYISLKPY---NIN 389

Query: 90  IHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           +      + +A         ++      A+K  S+K++  +EL+ +  K + +E L   +
Sbjct: 390 LENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFED 449

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVD 200
              +        +          E  + L  +S        E  L  +   +   G  VD
Sbjct: 450 LAEYMGQIICTVKE----TIPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVD 503

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
            ++   L+         L++E+  L+ G   +    ++L   LF +  L +   T+T   
Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELS-GEPFNINSPKQLGVILFEKLELPIIKKTKTGYS 562

Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               VL   +   P   ++   R    +     +  L+  +N                  
Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQ-IVKLNSTYVEGLLNIIN------------------ 603

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372
                       P  +R H   +Q IT      +++P+   I         +R   IA +
Sbjct: 604 ------------PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADD 651

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             KLV AD + +E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   
Sbjct: 652 NCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA 711

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y         +A    + +      +++                        
Sbjct: 712 KAVNFGIIYGKSDF---GLADDLNIPVPKAKEYIES------------------------ 744

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551
                            +  K+ ++ E    +    E+  E+G A+ I  +RR +P +  
Sbjct: 745 -----------------YFAKYHKIKEF---MDTTVEKASEDGYAVTILNRRRYIPEI-- 782

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
            K  N +                  R  +N                    +Q  + DI+ 
Sbjct: 783 -KSSNFMERN------------RGKRFAMNAP------------------IQGSAADIIK 811

Query: 612 EGMMNATKAGYD------IVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
             M+N  K   +      ++L VHDE++ E   D  +    ++   M 
Sbjct: 812 IAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEME 859


>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
 gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
          Length = 891

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +         ++  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 891

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
 gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
          Length = 891

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +         ++  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896]
          Length = 872

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 203/644 (31%), Gaps = 147/644 (22%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
           V +  +P+ LKE LE  +V I  +N   E T LK    + +P  +      LA+    PS
Sbjct: 342 VEEENIPK-LKELLERENVFIYGNNLKREYTALKPY-GITLP--KISFDSQLAQYILNPS 397

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            ++   E + +          L     KG+        N+    E       + K    +
Sbjct: 398 EVEQEPEKIGIKYGMPIVSPNLEDLLGKGKKRMSFSMANRVQMDE------YFAKILAII 451

Query: 168 TREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +    K L+ +  +         E  L  +   +   G  V+  +   L Q       + 
Sbjct: 452 SHCKTKMLDMIQEEDTKFLFEKIELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQY 511

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQ 275
           +QE+  L  G   +    ++L   LF +  L +   T+T       +L       P   +
Sbjct: 512 EQEIYDLA-GEEFNINSPKQLGVVLFEKLQLPVIKKTKTGYSTGAEILEKLYDKHPIISK 570

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           + + R                                 S+              P   R 
Sbjct: 571 ILSYRQ-------------------------------VSKLQSTYVIGLLSLINPTSKRI 599

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H   +Q +T      + +P+   I         +R   +A EG  LV AD + IE RVLA
Sbjct: 600 HSTFNQTLTTTGRISSLEPNLQNIPVRTEMGRELRKVFVAKEGYVLVDADYSQIELRVLA 659

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            MA E+  ++ F    D++  T +  F+V   +VTK+ R+  K +   + Y         
Sbjct: 660 HMAQEKKMIEGFHGSMDIHTKTASEVFSVPVEEVTKELRSAAKAVNFGIVYGISDF---G 716

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +++   +        +    A                                  +K   
Sbjct: 717 LSNNLNITKKQAKEYIDLYFARY------------------------------PGIKTYM 746

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                 V EL                  +  +RR +P +   K  N ++  +        
Sbjct: 747 DTIVKEVEELGY-------------STTLCGRRRYIPEI---KSSNFIVKNM-------- 782

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624
                 R  +NT                   +Q  + DI+   M          K   ++
Sbjct: 783 ----GKRLAMNTP------------------IQGSAADIIKIAMNRVFEWLKTEKIDAEL 820

Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           VL VHDE++ E  + D ++    +  LM    +W+  +PLK + 
Sbjct: 821 VLQVHDELLLEVREDDAKYVRDKVIELMEG--AWSMDVPLKVDA 862


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 116/692 (16%), Positives = 213/692 (30%), Gaps = 167/692 (24%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKE---ALENT 64
           ET    D    G+  Y E   ++ F+F F+D         H  + +P  + E   AL   
Sbjct: 334 ETIVAFDTETTGLD-Y-EKDKLVGFSFSFNDDEAFYVPFAHFYLGVPDQISEKDAALAMK 391

Query: 65  DV---TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +    +V HN  F+   +    N D+ ++ +  +++LA      SAL     + KL   
Sbjct: 392 KIFNSKVVGHNIKFDLHFVSRFLNDDM-LNIYSDSMILAWLINPESALGLDKLSDKLLDH 450

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
            M   K+ +              + +           +Y   D  +T ++F         
Sbjct: 451 TMLGFKDTVK-------------KGETFASVELEDASKYAAEDAYITLKLFNLFNEKLKL 497

Query: 182 EQELWYLDQT-------------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           +     +D++             +   G  VD          V      L + +     G
Sbjct: 498 QDATHLIDESQNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVKETLLNLTKTIYEQA-G 556

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF   GL +   T+T       VLSS K        +   R    +
Sbjct: 557 TEFNINSTKQLGVILFEHLGLPVGKKTKTGYSTDENVLSSLKDKHEIISSLLEYR-EIYK 615

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +  L++    D                             +  R H    Q  T 
Sbjct: 616 LYSTYIEPLLKLSLED-----------------------------KEGRIHTSFVQTGTA 646

Query: 346 LPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + +P+   I +       +R   +A EGKKL+  D + IE R+LA  + +   + 
Sbjct: 647 TGRLSSKNPNLQNIPARTSQGLKIREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVD 706

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF   +D+++ T    F     +    +RA+ K +   L Y  G    +K++ T G+   
Sbjct: 707 AFRANKDIHLQTAIALFG---EEEAPSKRAVAKTVNFGLLYGMGQ---KKLSETLGITTK 760

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                           +A+       E+ P               VK  +R       E 
Sbjct: 761 ----------------EAKEIIEKYFESFPT--------------VKTYFRSIVDNSKE- 789

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                      +   + ++ R+R                                   Y 
Sbjct: 790 -----------MGYVETLLKRRR-----------------------------------YF 803

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           +  T        Y  +   ++ Q  + D++   M          K    ++L +HDE++ 
Sbjct: 804 DYETASPMFRAAYDRESVNSVFQGSASDLIKLSMNKIATVIKEEKLNAKMLLQIHDELIF 863

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           E   D  E   +    +M +   +   +PL+A
Sbjct: 864 EVDADEAEMLGNRFKEIMENI--YELNIPLEA 893


>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
 gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 891

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQT 475

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
 gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
          Length = 891

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
 gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
          Length = 877

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 461

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 866


>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
 gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
          Length = 891

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 891

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQT 475

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
 gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bacillus anthracis str. A2012]
 gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
 gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
 gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
 gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
 gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
 gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
 gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
 gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
 gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
 gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
 gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
          Length = 877

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
 gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
          Length = 903

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 105/664 (15%), Positives = 202/664 (30%), Gaps = 147/664 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F  +     +     D    + L + LE+ + T + +++  +  V    
Sbjct: 355 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 410

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             ++I        ++LA     P  ++  V   + L  Q     K+ I  F KG+ H   
Sbjct: 411 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 466

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198
            +     H              VT T     E + ++E L   E  L  +   + + G  
Sbjct: 467 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 522

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            D+     +   +  +   L   +   + G   +    ++L   LF    L +   T+T 
Sbjct: 523 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 581

Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 VL   +   P    +   R  A                               +
Sbjct: 582 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 610

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                        + +  R H   +Q +       + DP+   I         +R     
Sbjct: 611 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 669

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            S+   ++ AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R
Sbjct: 670 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 729

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y        +   + G+        +       ++  +    +    + 
Sbjct: 730 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 780

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A    ++ T                                        +RR +P +
Sbjct: 781 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 803

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
             +           + RS         R+ +NT                   +Q  + DI
Sbjct: 804 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 830

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662
           +   M+        TK    ++L VHDE++ E P ++ E  +  +  +M         +P
Sbjct: 831 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 888

Query: 663 LKAE 666
           LK +
Sbjct: 889 LKVD 892


>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
 gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
 gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
          Length = 877

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
 gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
          Length = 891

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160]
 gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1]
 gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408]
          Length = 880

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 118/677 (17%), Positives = 219/677 (32%), Gaps = 171/677 (25%)

Query: 28  VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75
             ++        +    + D     V   D +  P+  + L K AL+  D+         
Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQEFLTKTALKTYDLKRT------ 379

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134
              VL + + +++P         LA+          +    +L  Q  +    E+  +  
Sbjct: 380 --KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188
           K         R  P   + +       +  +     + ++L        L   EQ L ++
Sbjct: 436 K---------RALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFV 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V+      +    +     L QE+  L  G   +    ++L T LF + G
Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545

Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           L LE    T+T       VL     + P   ++   R   S+     +  L EA+ +DG+
Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK 604

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
                                           H    Q +T      + DP+   I    
Sbjct: 605 -------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRL 633

Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F
Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVF 693

Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +     VT + R   K +   + Y         +A+  G++       ++T    E + 
Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             +N+                      E + +  R              + + +TI    
Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                +RR +P +              + R+   R+    R+ +N+              
Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799

Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649
                +Q  + DIL   M+N  +A         ++L VHDEIV E P+ +      L   
Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854

Query: 650 LMTSNPSWAKGLPLKAE 666
            M +    A  +PL A+
Sbjct: 855 TMEAAIELA--VPLVAD 869


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 108/657 (16%), Positives = 206/657 (31%), Gaps = 152/657 (23%)

Query: 29  CVILFAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
            ++ FA+G +   + +    D +     P+   +  +N             R +L    +
Sbjct: 343 QIVAFAWG-NAEKIYVSKNIDLLTKMKFPENTYDFKKN-------------RVLLSH-LD 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P+       +LA+     +    +    +L +       E I  F KG       D 
Sbjct: 388 IELPL--VKFDAMLAKYLISTTEDNKISTIARLFNSGHLATDEEI--FGKGTKIALPDDA 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           K  +       ++   LS  E  L  +   +   G  V      
Sbjct: 444 VLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLE 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262
            +    + +   L +E+  L  G   +    ++L   LF +  L +   T+T       V
Sbjct: 504 EIGAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDV 562

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L     L+P   ++   R                                 ++       
Sbjct: 563 LEDLAALSPVVAKILEYRQ-------------------------------INKVQSTYVK 591

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
              PQ +    + H    Q +T      + DP+   I         +R   + S+   L+
Sbjct: 592 GLIPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436
            +D + IE RVLA ++G++  + AF+ G D++ +T  R F +     VT + R   K + 
Sbjct: 651 SSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVN 710

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y         +A   G+      + ++T      + +     +   EN    A + 
Sbjct: 711 FGVVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDK 761

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            F+ T                                     ++ +RR +P +       
Sbjct: 762 GFVET-------------------------------------MSHRRRKIPDI------- 777

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                  + R+   R     R+ +N+                   +Q  + DIL   M+N
Sbjct: 778 -------NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMIN 811

Query: 617 ATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
             KA         ++L VHDEI+ + P  +     +L    M      A  +PLK +
Sbjct: 812 LDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKVLVKQTMEEAIELA--VPLKVD 866


>gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36]
 gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains,
           putative [Streptococcus sanguinis SK36]
          Length = 880

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 118/668 (17%), Positives = 217/668 (32%), Gaps = 165/668 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            V+  A+G D   + +   D +  P+  + L +    T     A        VL + + +
Sbjct: 337 EVVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDIKRA-------KVLLSHYGI 388

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           ++P         LA+                +   ++     L  +       E      
Sbjct: 389 ELPA--AAFDARLAKYL-----------LSTVEDNELVTIARLYGQTILPTDDEVYGKGA 435

Query: 147 KPNHREAWRLFGEYCKG-DVTVT--------REIFKRLEPLSSKEQELWYLDQTINDRGY 197
           K    E  +LF    +   V +              +L+ L   EQ L ++   +   G 
Sbjct: 436 KRALPEQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGI 495

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLT 255
            V+      +    +     L QE+  L  G   +    ++L T LF + GL LE    T
Sbjct: 496 KVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKT 554

Query: 256 ETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +T       VL     + P   ++   R   S+     +  L EA+ +DG+         
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK--------- 604

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
                                  H    Q +T      + DP+   I         +R  
Sbjct: 605 ----------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKA 642

Query: 368 VIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVT 425
            +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT
Sbjct: 643 FVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVT 702

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K +   + Y         +A+  G++       ++T    E +   +N+    
Sbjct: 703 PNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM--- 754

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                             E + +  R              + + +TI         +RR 
Sbjct: 755 ------------------ETIVREAR-------------DKGYVETI-------YHRRRS 776

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +P +              + R+   R+    R+ +N+                   +Q  
Sbjct: 777 LPDI--------------NSRNFNIRNF-AERTAINSP------------------IQGS 803

Query: 606 SRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA 658
           + DIL   M+N  +A         ++L VHDEIV E P+ +      ++   M +    A
Sbjct: 804 AADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMETAIELA 863

Query: 659 KGLPLKAE 666
             +PL A+
Sbjct: 864 --VPLVAD 869


>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
 gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
          Length = 891

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
 gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
          Length = 891

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678]
          Length = 880

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 118/677 (17%), Positives = 219/677 (32%), Gaps = 171/677 (25%)

Query: 28  VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75
             ++        +    + D     V   D +  P+  + L K AL+  D+         
Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQEFLTKTALKTYDLKRT------ 379

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134
              VL + + +++P         LA+          +    +L  Q  +    E+  +  
Sbjct: 380 --KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188
           K         R  P   + +       +  +     + ++L        L   EQ L ++
Sbjct: 436 K---------RALPEQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFV 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V+      +    +     L QE+  L  G   +    ++L T LF + G
Sbjct: 487 LAKMEIAGIKVERETLQGMQTENEKTLESLTQEIYDLA-GQEFNINSPKQLGTVLFEDMG 545

Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           L LE    T+T       VL     + P   ++   R   S+     +  L EA+ +DG+
Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK 604

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
                                           H    Q +T      + DP+   I    
Sbjct: 605 -------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRL 633

Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F
Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVF 693

Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +     VT + R   K +   + Y         +A+  G++       ++T    E + 
Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             +N+                      E + +  R              + + +TI    
Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                +RR +P +              + R+   R+    R+ +N+              
Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799

Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649
                +Q  + DIL   M+N  +A         ++L VHDEIV E P+ +      L   
Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854

Query: 650 LMTSNPSWAKGLPLKAE 666
            M +    A  +PL A+
Sbjct: 855 TMEAAIELA--VPLVAD 869


>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
 gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
          Length = 877

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI]
 gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
          Length = 877

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057]
          Length = 880

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 117/666 (17%), Positives = 216/666 (32%), Gaps = 161/666 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G D   + +   D +  P+  + L +    T     A        VL + + +
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRA-------KVLLSHYGI 388

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145
           ++P         LA+          +    +L  Q  +    E+  +  K         R
Sbjct: 389 ELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTVLPTDDEVYGKGAK---------R 437

Query: 146 NKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
             P   + +       +  +              +L+ L   EQ L ++   +   G  V
Sbjct: 438 ALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKV 497

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET 257
           +      +    +     L QE+  L  G   +    ++L T LF + GL LE    T+T
Sbjct: 498 ERENLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTKT 556

Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
                  VL     + P   ++   R   S+     +  L EA+ +DG+           
Sbjct: 557 GYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK----------- 604

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
                                H    Q +T      + DP+   I         +R   +
Sbjct: 605 --------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV 644

Query: 370 ASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKD 427
                  L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT +
Sbjct: 645 PEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPN 704

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y         +A+  G++       ++T    E +   +N+      
Sbjct: 705 DRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM----- 754

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           E + +  R              + + +TI         +RR +P
Sbjct: 755 ----------------ETIVREAR-------------DKGYVETI-------YHRRRSLP 778

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
            +              + R+   R+    R+ +N+                   +Q  + 
Sbjct: 779 DI--------------NSRNFNIRNF-AERTAINSP------------------IQGSAA 805

Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660
           DIL   M+N  +A         ++L VHDEIV E P  +      L    M +    A  
Sbjct: 806 DILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAAIKLA-- 863

Query: 661 LPLKAE 666
           +PL A+
Sbjct: 864 VPLVAD 869


>gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059]
          Length = 880

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 118/669 (17%), Positives = 216/669 (32%), Gaps = 167/669 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85
            ++  A+G D   + +   D +  P+  + L K AL+  D+            VL + + 
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P         LA+                +   ++     L  +       E     
Sbjct: 388 IELPA--AAFDARLAKYL-----------LSTVEDNELVTIARLYGQTILPTDDEVYGKG 434

Query: 146 NKPNHREAWRLFGEYCKG-DVTVT--------REIFKRLEPLSSKEQELWYLDQTINDRG 196
            K    E  +LF    +   V +              +L+ L   EQ L ++   +   G
Sbjct: 435 AKRALPEQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DL 254
             V+      +    +     L QE+  L  G   +    ++L T LF + GL LE    
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 255 TETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+T       VL     + P   ++   R   S+     +  L EA+ +DG+        
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK-------- 604

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366
                                   H    Q +T      + DP+   I         +R 
Sbjct: 605 -----------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRK 641

Query: 367 CVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQV 424
             +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     V
Sbjct: 642 AFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDV 701

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +   + Y         +A+  G++       ++T      + +     + 
Sbjct: 702 TPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIET------YFERFPGIKN 752

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
            +E     A +  ++ T                                     I  +RR
Sbjct: 753 YKETIVREARDKGYVET-------------------------------------IYHRRR 775

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            +P +              + R+   R+    R+ +N+                   +Q 
Sbjct: 776 SLPDI--------------NSRNFNIRNF-AERTAINSP------------------IQG 802

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSW 657
            + DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    
Sbjct: 803 SAADILKVAMINLDRALTEKNFNSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIEL 862

Query: 658 AKGLPLKAE 666
           A  +PL A+
Sbjct: 863 A--VPLVAD 869


>gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2]
 gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2]
          Length = 935

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 80/511 (15%), Positives = 155/511 (30%), Gaps = 74/511 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  +  +  N  ++  +L     + +        +  A   GL ++      + 
Sbjct: 413 LKPVLEDDAILKIGQNMKYDAKILAR-LGISVAPIDDTMLMSYAMHAGL-NSHGMDALSD 470

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +    +    K L+       T            R        Y   D  +T  +++  +
Sbjct: 471 QYLGHQPIAIKPLLGSGKSAVT----------FDRVPIDQAVAYAAEDADITLRLWELFK 520

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P   +          E+ L  +   +   G  VD      ++     +   L+ E+  + 
Sbjct: 521 PQLHRAHVTTVYETLERPLVPVLAQMEMAGIQVDRDTLSRMSNAFAQKMAGLEAEIHDMA 580

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   LF +  L   +  +T    T   VL           +V + R  
Sbjct: 581 -GEKFNVGSPKQLGEILFDKMSLPGGEKGKTGAYATGADVLEDLATEHELPGRVLDWRQL 639

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          S+              P   R H      
Sbjct: 640 -------------------------------SKLKSTYTDALQDHINPETGRVHTSYSLT 668

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                   ++DP+   I         +R   +A +G++LV  D + IE R+LA +A    
Sbjct: 669 GAVTGRLASTDPNLQNIPVRSEEGRRIREAFVAPKGRRLVSLDYSQIELRILAHVADIPA 728

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  G+D++  T +  FNV   Q+T D R   K +   + Y         +A    +
Sbjct: 729 LKQAFREGQDIHAMTASEMFNVPLDQMTPDIRRQAKAINFGVIYGISGF---GLARNLRI 785

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             +     +        + +     +   ++    A  + F+ T   R K    + ++R 
Sbjct: 786 PRSAAQGFID------RYFERFPGIKGYMDDTVAFAKANGFVQTLFGR-KIHTPEINARG 838

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                   +A       G A    +R  V +
Sbjct: 839 PGA-GFAKRAAINAPIQGTAADVIRRAMVRM 868


>gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 877

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
 gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
          Length = 893

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 122/689 (17%), Positives = 226/689 (32%), Gaps = 148/689 (21%)

Query: 15  DLTKCGIC----KYAEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           D+ K G+      + ED  +   A+         + +    D    +  K+  E  ++  
Sbjct: 325 DIEKDGVFYFKSIFEEDNYIHSNAYKIAIKTSSSKTYIYNPDEKFVEKFKKYFEADNIKK 384

Query: 69  VAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           V+ +   +  +      N+ +P    +    L   +   S+      +      ++E  +
Sbjct: 385 VSFDIKEDIVLFDKLGINISLPYDDTMLMHYL--IDPSRSSYDLKTFSQAFLKYEVENEE 442

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SK 181
           +L+ +    ++++ L   N       +         D      + ++LE LS        
Sbjct: 443 DLLGKGKSKKSYKDLDSDNL----GKYLASIVNAIED--SLDILTQKLEELSMYDLYKDC 496

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E +L  +   +   G+  D      +   V +E   L++ +  L  G   +    ++L  
Sbjct: 497 EIKLSKVLADMEITGFICDKNELEKIKDEVSLELGDLEKIIYELA-GSEFNINSPKQLSK 555

Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L +   T+T      +VL   +K  P   ++   R    +     L +L E +
Sbjct: 556 ILFEDLKLPIIKKTKTGYSTNAQVLEKLRKKHPIIEKIERYR-EMYKLKSTYLESLEECI 614

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           + DGR+R T                   QN              +T      +++P+   
Sbjct: 615 DEDGRIRSTF-----------------KQN--------------VTATGRLSSTEPNLQN 643

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           +         +R    A +GK L+ AD + IE RVLA +A ++   +AF    D++  T 
Sbjct: 644 LPIRTEEGRKIRKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIHTKTA 703

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F+    +VTK QR+  K +   + Y           S  GL+ N      +     E
Sbjct: 704 SEVFSTPIDEVTKLQRSEAKAVNFGIIYG---------ISDYGLSQNLNIPRKRAKEYIE 754

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            + D     +   ++  + A ED ++                                  
Sbjct: 755 NYLDTYPEIKKYMKDIVKKAKEDGYVN--------------------------------- 781

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                I  +RR VP +              + ++   R  G  R  LNT           
Sbjct: 782 ----TIFNRRRYVPEI--------------NSKNFNVRSFGE-RVALNTP---------- 812

Query: 594 GGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASM 646
                   +Q  + DI+   M      +   K    IVL +HDEI+ E    D E    +
Sbjct: 813 --------IQGTAADIIKFAMINSYQNLQKAKIDAKIVLQIHDEIIIEASKKDLEKAKEI 864

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           L   M         L +  +  ES    K
Sbjct: 865 LKSSMQDAVDLKVPLLVDIDSGESMYESK 893


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 95/613 (15%), Positives = 184/613 (30%), Gaps = 96/613 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-----VMPQV-----LKEALENT 64
           D     + + A    ++  +F             H+       +P       L+  LE+ 
Sbjct: 356 DTETTSLDEMA--ARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEVLARLRPWLEDP 413

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAVGEALKLSSQ 121
                  +  +++ VL    N  I +  +   T++ +       P  L+++ E       
Sbjct: 414 AAAKCGQHIKYDQHVLA---NHGILVQGYVHDTMLQSYVLEVHRPHNLESLAERH----- 465

Query: 122 KMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               G+  +     C     +       P  R        Y   D      + + L P  
Sbjct: 466 ---LGRSAMRYEDLCGKGAAQI------PFARVPIERAAPYACEDAEQCLAVHQVLWPQL 516

Query: 180 SKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             +  L  + +           +   G  +D A     +Q +  ER +  +       G+
Sbjct: 517 QAQPALQRIYELEVAVSGVLWRMERHGVLIDAAELQRQSQALG-ERIRALEAEAHALAGM 575

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++    +    L +   T T    T + VL    +  P   +V  +R     
Sbjct: 576 PFNLGSPKQIAEVFYDRLKLPVLKKTATGAPSTDEEVLEKLAEDYPLPARVLEHRSL--- 632

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                        +         P    P   R H    Q +  
Sbjct: 633 ----------------------------VKLKSTYTDKLPTMINPATGRVHTHFAQAVAV 664

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +++P+   I         +R+  IA  G  +  AD + IE R++A ++ +   L+
Sbjct: 665 TGRLASAEPNLQNIPIRTPEGRRIRAAFIAPPGHVIASADYSQIELRIMAHLSQDPALLR 724

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE G D++  T A  F V+P  VT +QR   K +   L Y         +A   G++ +
Sbjct: 725 AFEQGLDVHRATAAEVFGVSPEHVTPEQRRYAKTINFGLIYGMSPY---GLAKALGIDAS 781

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +      E + +     R   E     A    ++ T   R +    +  S     
Sbjct: 782 AAKSYI------ERYFERFAGVRAYMEQTRAQARARGYVETVFGR-RLVLPEIQSPNGPR 834

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                +A       G A    K   V +   + + +    ++L     LV+        +
Sbjct: 835 RAAAERAAINAPMQGTAADLIKMSMVAVQRALDEQQRRTRMVLQVHDELVFEVPNEEVDW 894

Query: 580 LNTTTRQLTREYT 592
           + T   +L     
Sbjct: 895 VRTEVPRLMAAVA 907


>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
 gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
          Length = 877

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +         ++  E+    V V  ++ + 
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 461

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 866


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 97/512 (18%), Positives = 164/512 (32%), Gaps = 79/512 (15%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 58  PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 114

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 115 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 167

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 168 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 226

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 227 KTENTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 255

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 256 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 315

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 316 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 375

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +   + Y   A    +      +        +      E +  +    R
Sbjct: 376 VDPLMRRTAKTINYGVLYGMSAHHLSQ---ELAIPYEEAQAFI------ERYFQSFPKVR 426

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              E   E      ++ T   R ++      +RV  +     +        G A    K 
Sbjct: 427 AWIEKTLEEGRRRGYVETLFGR-RRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKL 485

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             V L+   ++     ++L     LV      
Sbjct: 486 AMVKLLPRLEEMGA-RMLLQVHDELVLEAPKE 516


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 110/643 (17%), Positives = 195/643 (30%), Gaps = 150/643 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+  + I+ H+   E       +  +I I       ++      P+    + + L
Sbjct: 373 LKDILEDEHIRIIGHDLKKEII---HFYPYEIHIANLYFDTMVGEYLLNPAKSSYLLKDL 429

Query: 117 KLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE--IFK 173
            L       G+E+I      G+    L     P +     L        V       I +
Sbjct: 430 ALEYL----GEEIIDEEKIVGKGKNQLSLWAAPENEVKALLCNHVK---VIAELAKYIQE 482

Query: 174 RLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           ++E           E  L  +  ++   G  VD  +   L         KL  E+ SL  
Sbjct: 483 KIEDQGIHKLYYEVELPLVEVLASMEFLGIKVDRNMLLALEVEFKEIIDKLTSEIYSLA- 541

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284
           G+  +    ++L   LF + GL     T+T       VL   +       ++   R    
Sbjct: 542 GISFNINSPKQLGEVLFEKLGLPPTKKTKTGYSTNADVLEKLQDQHEIIPKISEYRQ--- 598

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                        ++              P  +R H   +Q +T
Sbjct: 599 ----------------------------VTKLKTTYVDGLLSIINPVTNRIHSSFNQTVT 630

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +++P+   I         +R   I+ EG + + AD + IE RVLA +A +   +
Sbjct: 631 ATGRISSTEPNLQNIPVRLEMGRRLRKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLI 690

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   +D++  T +  F V   +VT   R   K +   + Y        +  +      
Sbjct: 691 DAFIKNQDIHTRTASEIFEVPMEEVTSLMRGDAKAVNFGIVYGISDFGLSQNLNI----- 745

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                             A+ +     E +P                             
Sbjct: 746 --------------PVSKAKKYIESYFEKYP----------------------------S 763

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRS 578
           +   +H   E+  E G  +    RR                 LP  +S  +       R 
Sbjct: 764 IKEYMHNIVEEGKEKGYVVTLLNRRRY---------------LPELKSSNFNIRSFGERI 808

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEI 632
            +NT                   +Q  + DI+   M      + A      ++L VHDE+
Sbjct: 809 AMNTP------------------IQGSAADIIKIAMIAVYNRLKAENYDAKLILQVHDEL 850

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GYESKRY 673
           + E P+ + E  + +L   M +       +PLK +  Y +  Y
Sbjct: 851 IIECPENEIEEVSKILKESMENAIEMV--VPLKVDLSYANNWY 891


>gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459]
 gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
          Length = 875

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 94/622 (15%), Positives = 187/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           +D T V +++      +     + + I      ++LA     PS         A++    
Sbjct: 363 SDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAIRHDYT 419

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEENEQLALMED 475

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 476 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+         K    ++L VHDE++ E P+ +     
Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 108/648 (16%), Positives = 210/648 (32%), Gaps = 150/648 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I      D   +   D          L     N ++    +N   +   LK     +I 
Sbjct: 337 IIYIFISVDGEKIYYVDSNEVSK----LDSIFSNNEIKKYGYNLKDDYISLKPY---NIN 389

Query: 90  IHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           +      + +A         ++      A+K  S+K++  +EL+ +  K + +E L   +
Sbjct: 390 LENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFED 449

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVD 200
              +        +          E  + L  +S        E  L  +   +   G  VD
Sbjct: 450 LAEYMGQIICTVKE----TVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVD 503

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
            ++   L+         L++E+  L+ G   +    ++L   LF +  L +   T+T   
Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELS-GEPFNINSPKQLGVILFEKLELPIIKKTKTGYS 562

Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               VL   +   P   ++   R    +     +  L+  +N                  
Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQ-IVKLNSTYVEGLLNIIN------------------ 603

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372
                       P  +R H   +Q IT      +++P+   I         +R   IA +
Sbjct: 604 ------------PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADD 651

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             KLV AD + +E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   
Sbjct: 652 NCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA 711

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y         +A    + +      +++                        
Sbjct: 712 KAVNFGIIYGKSDF---GLADDLNIPVPKAKEYIES------------------------ 744

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551
                            +  K+ ++ E    +    E+  E+G A+ I  +RR +P +  
Sbjct: 745 -----------------YFAKYHKIKEF---MDTTVEKASEDGYAVTILNRRRYIPEI-- 782

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
            K  N +                  R  +N                    +Q  + DI+ 
Sbjct: 783 -KSSNFMERN------------RGKRFAMNAP------------------IQGSAADIIK 811

Query: 612 EGMMNATKAGYD------IVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
             M+N  K   +      ++L VHDE++ E   D  +    ++   M 
Sbjct: 812 IAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEME 859


>gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2]
 gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 108/675 (16%), Positives = 202/675 (29%), Gaps = 146/675 (21%)

Query: 17  TKCGICKYA--EDV---CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
           T+ G+   A  E+     V+  A    D    +            L++ LE+ D      
Sbjct: 326 TEHGLYVEAIGENPHQAEVLGLAAAVGDTAYVVPVAALQQPFTAELRKWLEDADKPKNG- 384

Query: 72  NSYFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVGEAL--KLSSQKMEEGKE 128
              F+   ++       I  H     + LA     P+       AL  +     +   + 
Sbjct: 385 ---FDTHKIELALGWRGIEWHGAAFDVQLAAYLLDPTDTNLTLNALCDRYGQSSVPHDEA 441

Query: 129 LIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQEL 185
           +  +  K          R+     +A R      + D+      E++  L      EQ L
Sbjct: 442 VYGKGAKFKVPDNETLHRHLSAKADAVRKLTSLMRADLEKRGMNELYFEL------EQPL 495

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +  +G  V+ A    L   ++ + +    E+  L   +  +    ++L   LF 
Sbjct: 496 SVILAGMERQGIKVEKAELERLGSELETKLSAAVSEIYRLA-EMEFNIGSPKQLGEVLFE 554

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           + GL ++  T+T         +KL P                    + +V  +       
Sbjct: 555 KLGLPVQKKTKTGYSTDAEVLEKLAP-------------------YHEIVPLI------- 588

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
             L +   S+           +  P   + H    Q I       +  P+   I      
Sbjct: 589 --LHYRTLSKLQSTYIEGLLKEVRPETGKIHTYYRQTIAATGRLSSQFPNLQNIPIRLEE 646

Query: 361 SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   + SE G  ++ AD + IE RVLA ++G++   +AF    D++  T    F V
Sbjct: 647 GRQIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDVFGV 706

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           +  QV  + R   K +   + Y        +      +     A  +      E++ +  
Sbjct: 707 SADQVDSNMRRSAKAVNFGIVYGISDFGLSQ---NLNITRKEAAKFI------EQYFEVF 757

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              R                                              Q   +G    
Sbjct: 758 QGVRKYM--------------------------------------DDIVMQARRDGFVTT 779

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLT 598
             +RR                 LP  ++  +       R+ +NT                
Sbjct: 780 LLERRRY---------------LPDIKASNFNLRSFAERTAMNTP--------------- 809

Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP-DTDEFNASMLYHLM 651
              +Q  + DI+   M+   +          ++L VHDE+V E P +  E    ++   M
Sbjct: 810 ---IQGTAADIIKLAMVRMNETLRERGLKSRMLLQVHDELVFEVPEEELELMKELVPSTM 866

Query: 652 TSNPSWAKGLPLKAE 666
               +    +PLKA+
Sbjct: 867 AG--ALTLDVPLKAD 879


>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
 gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
          Length = 877

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 103/523 (19%), Positives = 177/523 (33%), Gaps = 136/523 (26%)

Query: 168 TREIFKRL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           T ++ KRL      E + + E  L  +   +   G  +D        + V  +  ++ ++
Sbjct: 453 TDQLLKRLSGAHLVELMKTLELPLIPVLADMESAGVKLDAEALADFLEEVQKDLDRITED 512

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
           +     G   + R  ++L   LF    L +   T     +T Q VL       P    + 
Sbjct: 513 VYREAQG-PFNIRSAQQLGDVLFNRLKLPVSGKTRGGQASTSQDVLEKLSGHHPVVDALL 571

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R +  +     L  L   M  DGR+R T                              
Sbjct: 572 EFR-KLEKLRSTYLEPLPRLMGGDGRIRTTF----------------------------- 601

Query: 338 ELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +Q+ T      +S+P+   I     +   +R+C  A EGKKL+ AD + IE RVLA +
Sbjct: 602 --NQLATATGRLSSSNPNLQNIPVRGALGRRMRACFTAPEGKKLISADYSQIELRVLAHL 659

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G D++  T +  F+  P+++T DQR   K +   L Y  G    QK+A
Sbjct: 660 SRDETLLAAFREGADIHARTASLLFDAPPSEITPDQRRNAKTINFGLIYGMGP---QKLA 716

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               + L+     +        + +     +   EN  E A E  ++             
Sbjct: 717 QELKIPLSEAKAFMA------RYFERLQGLKHFYENVEEMAREQGYV------------- 757

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                                     +A +RR +P +  +  +          RSL  R 
Sbjct: 758 ------------------------TTLAGRRRPLPDIQAESQQA---------RSLARRQ 784

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626
                                       ++Q  + DI+   M+              ++L
Sbjct: 785 ------------------------AINTLIQGSAADIIKLAMLAVHGDETLRTLDAKLLL 820

Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAE 666
            VHDE++ E P+     A   +  LM +         +PLKA+
Sbjct: 821 QVHDELLLEVPEAAAQEAGERVAALMANVRPGGIVLDVPLKAD 863


>gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
 gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
          Length = 889

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 100/551 (18%), Positives = 171/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 443 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 502

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    +V   +L QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 503 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 561

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + +  DG++      
Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 614

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +A+  G++       + T               
Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKKAKAYIDTYF------------- 753

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 754 -------------------------------ERFPGIKNYMEEVVREARDKGYVETLFKR 782

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAI 869

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 870 Q--LSVPLIAD 878


>gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175]
 gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220]
 gi|332312007|gb|EGJ25102.1| DNA polymerase I [Listeria monocytogenes str. Scott A]
          Length = 875

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 94/622 (15%), Positives = 187/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           +D T V +++      +     + + I      ++LA     PS         A++    
Sbjct: 363 SDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAIRHDYT 419

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEENEQLALMED 475

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 476 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+         K    ++L VHDE++ E P+ +     
Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864


>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
 gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
          Length = 877

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 209/707 (29%), Gaps = 175/707 (24%)

Query: 7   DFETRSP---------IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-- 55
           D E  S          +D    G+   A +  ++  +F    +         D    +  
Sbjct: 344 DIEELSKKLMPFKEIALDTETTGLE--AMEAEIVGISFSVKKNEAYYIPFPKDQEETKKR 401

Query: 56  --VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
             ++K  LEN     +  N  ++  +LK   N  I +   +   ++A     P     + 
Sbjct: 402 LNIIKPLLENKKSLKIGQNIKYDLLILK---NYGIEVVGKLFDTMIAHYVVQPELRHNMD 458

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E     +      ++LI      +       R              Y   D  +T +
Sbjct: 459 YLAEIY--LNHITIPIEDLIG----PKGKNQKSMRELSPED-----VYIYACEDADITFQ 507

Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +   +E    +          E  L  +   +   G  +D     +L++        +++
Sbjct: 508 LKNAIEKDLKENQAEELFYTIEMPLVPVLTDMEYTGVLLDKKALKSLSKDFTDRLITIEE 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQ 275
           E+  L      +    +++   LF +  +      T+T    T + VL S K   P   +
Sbjct: 568 EIHKLADN-DFNVSSPKQVGEILFDKLKIDEKAKKTKTGQYVTSEEVLLSYKDKHPIVEK 626

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +                                 + G  +         P     +  + 
Sbjct: 627 IL-------------------------------DYRGLKKLLSTYVDALPKLINKKTGKI 655

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H   +Q +T      +S+P+   I         +R   I  +      AD + IE R++A
Sbjct: 656 HTSFNQTVTATGRLSSSNPNLQNIPIRDSDGKEIRKAFIPDQDSLFFSADYSQIELRIMA 715

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++AF  G+D++  T A+ +      +T DQR   K     + Y         
Sbjct: 716 HLSHDNNMMEAFLHGDDIHAATAAKVYKQDINTITSDQRRKAKTANFGIIYGISVF---G 772

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A    +       L++                   E +P                    
Sbjct: 773 LAERMQVERKEAKELIEG----------------YFETYP-------------------- 796

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                   ++   + Q+  +  E G       R+                 LP   S   
Sbjct: 797 --------QVKEYMDQSIVEAREKGYVETIFNRKRY---------------LPDINSRNA 833

Query: 571 RDVG-NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYD 623
              G + R+ +N                    +Q  + DI+   M+N        K    
Sbjct: 834 VVRGFSERNAINAP------------------IQGSAADIIKVAMVNIHKRFKEEKLLSK 875

Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
           ++L VHDE+     P   E    ++   M +  ++   +PLKA+ G+
Sbjct: 876 MILQVHDELNFTVIPSEKEKVQQIVIQEMEN--AYKLSVPLKADFGW 920


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 111/680 (16%), Positives = 202/680 (29%), Gaps = 154/680 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNS 73
           D    G+    ++    L    F   P + W   V  P   + ++  LE      + H+ 
Sbjct: 383 DTETTGLNPLMDN----LLGVSFCAEPHKAWYMPVSGPADLEAVRPLLEGPA-EKIGHHL 437

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
            F+  VL+A     I +       +LA +   P         A  L      + K++ A 
Sbjct: 438 KFDLEVLRA---NGIHVKGPFFDTLLAHALIAPGMKHGMDVLAENLLQYSTIKLKDIAAP 494

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------E 182
             K         R          + G+Y   D  +T ++   L+    +          E
Sbjct: 495 GAK--------KRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKESGMEKLFRTVE 546

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +   G  V        +  V      L + +E    G   +    ++L  +
Sbjct: 547 LPLLPVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEE-AAGHPLNLNSPKQLGDF 605

Query: 243 LFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           LF E  L      T+T    T +  LS+     P    +   R                 
Sbjct: 606 LFGELELVKKPKKTKTGQFVTDEDTLSALAPQHPIIADILAYRENM-------------- 651

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                            +         P    PR  R H +  Q++T      + DP+  
Sbjct: 652 -----------------KLKSTYLDALPKYICPRDGRIHTQFHQMLTATGRLASQDPNLQ 694

Query: 358 QII-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R+  + ASE   ++ AD + IE R++A ++G+     AF  G D++  
Sbjct: 695 NIPVRTEQGRLIRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREGRDIHTE 754

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T AR + +   QV    R   K +   + Y   A    +     G      A L+     
Sbjct: 755 TAARVYGIPRDQVDAVMRRAAKTVNFGIIYGISAFGLSQ---RLGCPRGEAATLI----- 806

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E +       +   E+    A +  +  T   R     R+    +         +  +T
Sbjct: 807 -ENYFTQFPVVKSFMEDLVHKAEQAGYAETLLGR-----RRMIPEI--------NSANKT 852

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
           I++                                          R+ +NT         
Sbjct: 853 IKSAA---------------------------------------ERTAINTP-------- 865

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNASML 647
                     +Q  + D++   M++  K        ++L +HDE++ +    +      +
Sbjct: 866 ----------IQGTAADMIKIAMIHVDKLLKGTRSRLILQIHDELLVDLHRDELDLIPKI 915

Query: 648 YHLMTSNPSWAKGLPLKAEG 667
              M S      G+P+  E 
Sbjct: 916 EEAMVSALPLPNGVPILVEA 935


>gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 987

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 109/648 (16%), Positives = 198/648 (30%), Gaps = 137/648 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDI-------PIHRWIC-TLVLARSN--GLP 106
           L+  LE+     + HN  ++  VL+    +++           W     ++A        
Sbjct: 430 LRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIASYLVDASR 488

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETH-ECLYDRNKPNHREAWRLFGEYCKGDV 165
           S+      A+ L  ++     ELI    K +T      DR  P           Y   D 
Sbjct: 489 SSHSMDALAMALLERRNIPISELIGTGKKQKTFDTVPLDRATP-----------YAAEDA 537

Query: 166 TVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            VT ++ +RL P   +          E  L  +   +   G  VD          ++   
Sbjct: 538 DVTLQLCQRLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDRQRGRIEGRV 597

Query: 216 TKLDQELESLTYGL---VSSSRCLEKLKTWLFLE-------TGLHLEDLTETTCQRVLSS 265
             L  ++     G       +   ++L   LF +        GL +    +T        
Sbjct: 598 KDLRNQIADEAMGAVGREFDADSPKQLAGVLFNKPDAADPGLGLRVIKRGKTGPSTDAEV 657

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +KL+  A            S    +  L             L++   ++          
Sbjct: 658 LEKLSQDA------------SVKTPIPDL------------ILEYRQLTKLVNTYLVNLV 693

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380
            +  PR  R H   +Q +       +SDP+   I     +   +R   +A  G  LV AD
Sbjct: 694 EEIDPRTKRIHASFNQTVAATGRLSSSDPNLQNIPIRTELGREIRKAFVAEPGHLLVAAD 753

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA ++ +   ++AF  G+D++    A+  +V  A+V+++QR   K++   + 
Sbjct: 754 YSQIELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKMVNFGIV 813

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y   A     +A   G++ +    ++        +     F              +  + 
Sbjct: 814 YGVTAF---GLARRLGVSNSEAGEIID--GYKRRFAGITTFLEECIAQAHAQGYVETMMK 868

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                 ++      SR         +    ++  G A    K   V L            
Sbjct: 869 R-----RRPIPDIDSRDQNRRALAERMAINSVVQGSAADLIKIAMVDL------------ 911

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                R L  R                      G                          
Sbjct: 912 ----HRRLSPR------------AAAWREGA--GP----------------------EIE 931

Query: 621 GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           G  ++L +HDE+V E P D  E    ++   M +    A  +PL A+ 
Sbjct: 932 GVRMLLQIHDELVFEAPKDRAEAVRDLIVARMEAAM--ALDVPLVADA 977


>gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150]
          Length = 880

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 114/677 (16%), Positives = 210/677 (31%), Gaps = 171/677 (25%)

Query: 28  VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
             ++        +    + D     V   D +  P+  + L +    T     A      
Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVSTSDLLQQPLFQEFLTKTALKTYDLKRA------ 379

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCK 135
             VL + + +++P         LA+          +    +L  Q  +    E+  +  K
Sbjct: 380 -KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK 436

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLD 189
                    R  P+  + +       +  +     + ++L        L   EQ L ++ 
Sbjct: 437 ---------RALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVL 487

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+      +    +     L QE+  L  G   +    ++L T LF + GL
Sbjct: 488 AKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGL 546

Query: 250 HLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            LE    T+T       VL     + P   ++   R   S+     +  L EA+ +DG+ 
Sbjct: 547 PLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK- 604

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
                                          H    Q +T      + DP+   I     
Sbjct: 605 ------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLE 634

Query: 361 -SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F 
Sbjct: 635 QGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFG 694

Query: 419 VAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           +     VT + R   K +   + Y         +A+  G++       ++T         
Sbjct: 695 IEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF------- 744

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-K 536
                                                 R   + N +     +  + G  
Sbjct: 745 -------------------------------------ERFPGIKNYMETIVREARDKGYV 767

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
             I  +RR +P +              + R+   R+    R+ +N+              
Sbjct: 768 ETIYHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799

Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649
                +Q  + DIL   M+N  +A         ++L VHDEIV E P  +      L   
Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKE 854

Query: 650 LMTSNPSWAKGLPLKAE 666
            M +    A  +PL A+
Sbjct: 855 TMEAAIKLA--VPLVAD 869


>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 877

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 522 LA-GREFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 105/668 (15%), Positives = 213/668 (31%), Gaps = 153/668 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-----LKEALENTDVTI 68
           +D    G+  + +   +I  +F    +     D      + +      + E L   D+ +
Sbjct: 360 VDFETTGLDVFKD--TIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDMVFETLAKEDIKV 417

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + HN  +E  +++A   ++          ++A     P+               M++   
Sbjct: 418 IGHNLKYEYKMMRA---INKSFGNMYFDTMVAAYLINPTR----------GRYNMDDLA- 463

Query: 129 LIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----- 181
            IA              N  K       +   EY   D  +T   ++   PL        
Sbjct: 464 -IAYLSYNTIKYSDITDNAKKTLLDVPLKDVVEYACEDADITFRFYECFAPLLKTHNLEE 522

Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   +   G  +       L+        K  +++ +   G   + +  
Sbjct: 523 LFFNIEMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIYAEA-GEEFNIQSP 581

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+  LF + G+     T+T          +L                S   K+     
Sbjct: 582 KQLEYILFDKMGIPPTKKTKTGFSTDEEVLTEL----------------SQKYKIAEY-- 623

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      L +   ++       VFP     +  R H   +Q +T      +S+P+ 
Sbjct: 624 ----------MLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNL 673

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R+  IA +G  L+ AD + IE R+LA  + +   ++AF+  +D++  
Sbjct: 674 QNIPVRGEEGREIRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRK 733

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  + ++V+   VT   R I K++  ++ Y   A     ++   G+              
Sbjct: 734 TAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAF---GLSKELGIKRK----------- 779

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +AE+F +     +         +   CE V +  R              + + +T
Sbjct: 780 -----EAEDFIKGYFSTYSR-------VKPFCEEVVEEVRN-------------KGYVRT 814

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                              M     +L   + S  ++   +    R  LNT         
Sbjct: 815 -------------------MCGRIRDLSKTINSSNAMARNEA--ERMALNT--------- 844

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                    ++Q  + D++   M+   K          IV+ VHDE+V E  + +   A 
Sbjct: 845 ---------LIQGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEADKAM 895

Query: 645 SMLYHLMT 652
           +++  +M 
Sbjct: 896 TIMKEIME 903


>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
 gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
          Length = 891

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile]
          Length = 882

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 108/648 (16%), Positives = 210/648 (32%), Gaps = 150/648 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I      D   +   D          L     N ++    +N   +   LK     +I 
Sbjct: 337 IIYIFISVDGEKIYYVDSNEVSK----LDSIFSNNEIKKYGYNLKDDYISLKPY---NIN 389

Query: 90  IHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           +      + +A         ++      A+K  S+K++  +EL+ +  K + +E L   +
Sbjct: 390 LENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFED 449

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVD 200
              +        +          E  + L  +S        E  L  +   +   G  VD
Sbjct: 450 LAEYMGQIICTVKE----TVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVD 503

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
            ++   L+         L++E+  L+ G   +    ++L   LF +  L +   T+T   
Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELS-GEPFNINSPKQLGVILFEKLELPIIKKTKTGYS 562

Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               VL   +   P   ++   R    +     +  L+  +N                  
Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQ-IVKLNSTYVEGLLNIIN------------------ 603

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372
                       P  +R H   +Q IT      +++P+   I         +R   IA +
Sbjct: 604 ------------PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADD 651

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             KLV AD + +E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   
Sbjct: 652 NCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA 711

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y         +A    + +      +++                        
Sbjct: 712 KAVNFGIIYGKSDF---GLADDLNIPVPKAKEYIES------------------------ 744

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551
                            +  K+ ++ E    +    E+  E+G A+ I  +RR +P +  
Sbjct: 745 -----------------YFAKYHKIKEF---MDTTVEKASEDGYAVTILNRRRYIPEI-- 782

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
            K  N +                  R  +N                    +Q  + DI+ 
Sbjct: 783 -KSSNFMERN------------RGKRFAMNAP------------------IQGSAADIIK 811

Query: 612 EGMMNATKAGYD------IVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
             M+N  K   +      ++L VHDE++ E   D  +    ++   M 
Sbjct: 812 IAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEME 859


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 108/657 (16%), Positives = 205/657 (31%), Gaps = 152/657 (23%)

Query: 29  CVILFAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
            ++ FA+G +   + +    D +     P+   +  +N             R +L    +
Sbjct: 343 QIVAFAWG-NAEKIYVSKNIDLLTKMKFPENTYDFKKN-------------RVLLSH-LD 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P+       +LA+     +    +    +L +       E I  F KG       D 
Sbjct: 388 IELPL--VKFDAMLAKYLISTTEDNKISTIARLFNSGHLATDEEI--FGKGTKIALPDDA 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           K  +       ++   LS  E  L  +   +   G  V      
Sbjct: 444 VLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLE 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262
            +    + +   L +E+  L  G   +    ++L   LF +  L +   T+T       V
Sbjct: 504 EIGAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDV 562

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L     L+P   ++   R                                 ++       
Sbjct: 563 LEDLAALSPVVAKILEYRQ-------------------------------INKVQSTYVK 591

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
              PQ +    + H    Q +T      + DP+   I         +R   + S+   L+
Sbjct: 592 GLIPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436
            +D + IE RVLA ++G++  + AF+ G D++ +T  R F +     VT + R   K + 
Sbjct: 651 SSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVN 710

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y         +A   G+      + ++T      + +     +   EN    A + 
Sbjct: 711 FGVVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDK 761

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            F+ T                                     ++ +RR +P +       
Sbjct: 762 GFVET-------------------------------------MSHRRRKIPDI------- 777

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                  + R+   R     R+ +N+                   +Q  + DIL   M+N
Sbjct: 778 -------NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMIN 811

Query: 617 ATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
             KA         ++L VHDEI+ + P  +      L    M      A  +PLK +
Sbjct: 812 LDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEAIELA--VPLKVD 866


>gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 886

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 98/629 (15%), Positives = 192/629 (30%), Gaps = 137/629 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAV 112
            ++  L +  V    ++ +  R  L   ++            + A       +   +  +
Sbjct: 366 EVRAWLADEQVPKRGYDLH--RADLVLFWHGVAFAGAEHDVQLAAYLLDPTESDQTISGL 423

Query: 113 GEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
               +L     ++  E+  +  K       +  R+     +A        + D+    E+
Sbjct: 424 AAKYQLPQVPGDD--EVYGKGAKFKVPEPDVLSRHLARKADALLRILPLQREDL-AKYEM 480

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            K    L   E  L  +   +  +G  V+      L    + +  KL   +  +  G   
Sbjct: 481 EKLFYEL---EMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVARIYEIA-GQEF 536

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L   LF + GL +   T+T         +KL P                    
Sbjct: 537 NINSTKQLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAP-------------------Y 577

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           + +         ++  L++   ++           +  P+  + H    Q I       +
Sbjct: 578 HEI---------VQFILEYRQLAKLQSTYVEGLLKEISPKTGKVHTYFRQTIAATGRLSS 628

Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             P+   I         +R   + SE G  ++ AD + IE RVLA ++G+    +AF   
Sbjct: 629 QYPNLQNIPIRLEEGRKIRKVFVPSEEGWFILSADYSQIELRVLAHISGDPGLQEAFLHD 688

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T    F V P QV  + R   K +   + Y        +      +     A  
Sbjct: 689 MDIHTKTAMDVFGVGPDQVDANMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAARF 745

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +      E++ +A    R   +   + A  D                             
Sbjct: 746 I------EQYFNAFQGVRRYMDEIVKAAKRDG---------------------------- 771

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTT 584
                     K ++ R+R                  LP   +  +       R+ +NT  
Sbjct: 772 --------YVKTLLERRRY-----------------LPEINASNFNLRSFAERTAMNTP- 805

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPD 638
                            +Q  + DI+   M+   +  +       ++L VHDE+V E P 
Sbjct: 806 -----------------IQGTAADIIKLAMVRMDEELHKHGLKSRMLLQVHDELVFEVPP 848

Query: 639 TD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            + EF + ++   M         +PLKAE
Sbjct: 849 EELEFMSKLVPETMGKALE--LSVPLKAE 875


>gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405]
          Length = 880

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 118/677 (17%), Positives = 219/677 (32%), Gaps = 171/677 (25%)

Query: 28  VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75
             ++        +    + D     V   D +  P+  + L K AL+  D+         
Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQEFLTKTALKTYDLKRT------ 379

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134
              VL + + +++P         LA+          +    +L  Q  +    E+  +  
Sbjct: 380 --KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188
           K         R  P   + +       +  +     + ++L        L   EQ L ++
Sbjct: 436 K---------RALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFV 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V+      +    +     L QE+  L  G   +    ++L T LF + G
Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545

Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           L LE    T+T       VL     + P   ++   R   S+     +  L EA+ +DG+
Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK 604

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
                                           H    Q +T      + DP+   I    
Sbjct: 605 -------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRL 633

Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F
Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVF 693

Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +     VT + R   K +   + Y         +A+  G++       ++T    E + 
Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             +N+                      E + +  R              + + +TI    
Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                +RR +P +              + R+   R+    R+ +N+              
Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799

Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649
                +Q  + DIL   M+N  +A         ++L VHDEIV E P+ +      L   
Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854

Query: 650 LMTSNPSWAKGLPLKAE 666
            M +    A  +PL A+
Sbjct: 855 TMEAAIELA--VPLVAD 869


>gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 105/664 (15%), Positives = 202/664 (30%), Gaps = 147/664 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F  +     +     D    + L + LE+ + T + +++  +  V    
Sbjct: 328 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             ++I        ++LA     P  ++  V   + L  Q     K+ I  F KG+ H   
Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 439

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198
            +     H              VT T     E + ++E L   E  L  +   + + G  
Sbjct: 440 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            D+     +   +  +   L   +   + G   +    ++L   LF    L +   T+T 
Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554

Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 VL   +   P    +   R  A                               +
Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 583

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                        + +  R H   +Q +       + DP+   I         +R     
Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 642

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            S+   ++ AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R
Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y        +   + G+        +       ++  +    +    + 
Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 753

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A    ++ T                                        +RR +P +
Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
             +           + RS         R+ +NT                   +Q  + DI
Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662
           +   M+        TK    ++L VHDE++ E P ++ E  +  +  +M         +P
Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861

Query: 663 LKAE 666
           LK +
Sbjct: 862 LKVD 865


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/693 (16%), Positives = 203/693 (29%), Gaps = 160/693 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-----VMPQV--- 56
             D ET S   +T            ++  +F  +          H        +P+    
Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPREEVL 388

Query: 57  --LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+     V  +  ++  VL         I     TL+ +              
Sbjct: 389 AKLKPWLESAQQKKVGQHLKYDEQVLANYGIEMRGIE--HDTLLQSYVLESHRPHDMDNL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K  + +++  +  +    + +       +                +T  + + 
Sbjct: 447 ALRHLGVKTIKYEDVAGKGAQQIGFDEVALEKAAEYAAEDA----------DITLRLHQT 496

Query: 175 LEPLSSKE--QELWYLDQT---------INDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P  + E   E  Y D           +   G  +D       +  +     +L+ +  
Sbjct: 497 MYPQLAAEKTLENVYRDIEVPTSRVLRKMERTGVLIDAEKLRQQSNEIATRLIELESKAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +         +T + VL    +  P    +  +
Sbjct: 557 ELAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                               G S+         P        R H   
Sbjct: 616 R-------------------------------GLSKLKSTYTDKLPRMVNASTGRVHTNY 644

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q +       ++DP+   I         +R   IA  G KLV AD + IE R++A ++G
Sbjct: 645 AQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISG 704

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L+AF  GED++  T A  F+V P +V+ DQR + KV+   L Y   +     +AS 
Sbjct: 705 DESLLRAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSF---GLASN 761

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+  +     +        +       R+M E     A    ++ T   R +    + +
Sbjct: 762 LGITRDAAKLYID-----RYFARYPGVARYMDETRL-SAKAKGYVETVFGR-RLWLPEIN 814

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   +                            
Sbjct: 815 GGNGPRRQAAERAAINAPMQGTAADLIKLSMI---------------------------- 846

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                     ++   E   G ++   I+Q                        VHDE++ 
Sbjct: 847 --------AVQKWIEESNIGTRM---IMQ------------------------VHDELIL 871

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           E PD +       L  LM      A  +PL AE
Sbjct: 872 EVPDEELPEVRKRLPELMCGVA--ALKVPLVAE 902


>gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus]
          Length = 878

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/612 (14%), Positives = 185/612 (30%), Gaps = 133/612 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           LE+        +       LK    +++        L++A     PS + + V    K  
Sbjct: 363 LEDETKKKSVFDGKRAIVALK-WKGIEL--RGIEFDLLIASYLLNPSQSTEDVASVAKTK 419

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                +  E +  + KG       ++    H           + +     +  ++    +
Sbjct: 420 QYMAVQSDEAV--YGKGAKQTVPEEKALAEHLVRKAAAIRALEKEFIHDLQENEQYALFT 477

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VDV     + + +  +   ++QE+  L  G   +    ++L
Sbjct: 478 DLELPLSSILAEMEFTGVKVDVERLKEMGEELTEQLRAVEQEIYELA-GQEFNINSPKQL 536

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL           ++ + R    +     +  L++
Sbjct: 537 GVILFEKLQLPVLKKTKTGYSTSADVLEKLAPQHEIVEKILHYRQL-GKLQSTYIEGLLK 595

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++ D                                + H   +Q +T      +++P+ 
Sbjct: 596 VVHCD------------------------------THKVHTIFNQALTQTGRLSSTEPNL 625

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   + S     +  AD + IE RVLA +A ++  + AF    D++ 
Sbjct: 626 QNIPIRLEEGRKIRQAFVPSKPDWVIFSADYSQIELRVLAHIANDENLIDAFRHDLDIHT 685

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+V   +VT + R   K +   + Y        +      +     A  +    
Sbjct: 686 KTAMDIFHVTADEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLNIPRKEAAEFI---- 738

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               + +     +   EN  + A +  ++                               
Sbjct: 739 --RRYFEIFPGVKQYMENIVQEAKQKGYV------------------------------- 765

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                   +  +RR +P +  +           + RS         R+ +NT        
Sbjct: 766 ------TTLLHRRRYLPDITSRNF---------NLRSFA------ERTAMNTP------- 797

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+ + M++        K    ++L VHDE++ E P  +    
Sbjct: 798 -----------IQGSAADIIKKAMIDLADRLKQEKLQARMLLQVHDELILEAPKEEVKRL 846

Query: 645 SMLY-HLMTSNP 655
             +   +M +  
Sbjct: 847 QQIVPEVMENAI 858


>gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 108/657 (16%), Positives = 205/657 (31%), Gaps = 152/657 (23%)

Query: 29  CVILFAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
            ++ FA+G +   + +    D +     P+   +  +N             R +L    +
Sbjct: 343 QIVAFAWG-NAEKIYVSKNIDLLTKMKFPENTYDFKKN-------------RVLLSH-LD 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P+       +LA+     +    +    +L +       E I  F KG       D 
Sbjct: 388 IELPL--VKFDAMLAKYLISTTEDNKISTIARLFNSGHLATDEEI--FGKGTKIALPDDA 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           K  +       ++   LS  E  L  +   +   G  V      
Sbjct: 444 VLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLE 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262
            +    + +   L +E+  L  G   +    ++L   LF +  L +   T+T       V
Sbjct: 504 EIGAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDV 562

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L     L+P   ++   R                                 ++       
Sbjct: 563 LEDLAALSPVVAKILEYRQ-------------------------------INKVQSTYVK 591

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
              PQ +    + H    Q +T      + DP+   I         +R   + S+   L+
Sbjct: 592 GLIPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436
            +D + IE RVLA ++G++  + AF+ G D++ +T  R F +     VT + R   K + 
Sbjct: 651 SSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVN 710

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y         +A   G+      + ++T      + +     +   EN    A + 
Sbjct: 711 FGVVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDK 761

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            F+ T                                     ++ +RR +P +       
Sbjct: 762 GFVET-------------------------------------MSHRRRKIPDI------- 777

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                  + R+   R     R+ +N+                   +Q  + DIL   M+N
Sbjct: 778 -------NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMIN 811

Query: 617 ATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
             KA         ++L VHDEI+ + P  +      L    M      A  +PLK +
Sbjct: 812 LDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEAIELA--VPLKVD 866


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 107/655 (16%), Positives = 202/655 (30%), Gaps = 152/655 (23%)

Query: 32  LFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
           + AF + +          D + +   P+   +  +N             R +L    N++
Sbjct: 344 IVAFAWGNSEKIYVSKNLDLLTEMKFPENTYDFKKN-------------RVLLSH-LNIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +P+       +LA+     +    +    +L         E I  F KG       D   
Sbjct: 390 LPL--VKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI--FGKGTKLALPDDEIL 445

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            +H           K  +       ++   LS  E  L  +   +   G  V       +
Sbjct: 446 FDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEI 505

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLS 264
               + +   L +E+  L  G   +    ++L   LF +  L +   T+T       VL 
Sbjct: 506 GAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLE 564

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
               L+P   ++   R                                 ++         
Sbjct: 565 DLAALSPVVAKILEYRQ-------------------------------INKVQSTYVKGL 593

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379
            PQ +    + H    Q +T      + DP+   I         +R   + S+   L+ +
Sbjct: 594 IPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSS 652

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438
           D + IE RVLA ++ ++  + AF+ G D++ +T  R F +     VT + R   K +   
Sbjct: 653 DYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y         +A   G+      + ++T      + +     +   EN    A +  F
Sbjct: 713 VVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDKGF 763

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
           + T                                     ++ +RR +P +         
Sbjct: 764 VET-------------------------------------MSHRRRKIPDI--------- 777

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                + R+   R     R+ +N+                   +Q  + DIL   M+N  
Sbjct: 778 -----NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMINLD 813

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           KA         ++L VHDEI+ + P  +  +   L    M      A  +PLK +
Sbjct: 814 KALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA--VPLKVD 866


>gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
 gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
          Length = 876

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 200/664 (30%), Gaps = 147/664 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F  +     +     D    + L   LE+ + T + +++  +  V    
Sbjct: 328 YLKDA-ILKFGFYTNHQ--HVVINADDVKNYKNLVRWLEDKNTTKIVYDAK-KTYVSAHR 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             ++I        ++LA     P  ++  V   + L  Q     K+ I  F KG+ H   
Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVGLYGQ--NYVKDNITVFGKGKKHHIP 439

Query: 143 YDRNKPNHREAWRLFGEYCKGDVT----VTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
            +     H              VT       E + ++E L   E  L  +   + + G  
Sbjct: 440 EESILNEH----IASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            D+     +   +  +   L   +   + G   +    ++L   LF    L +   T+T 
Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554

Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 VL   +   P    +   R                                 S+
Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQL-------------------------------SK 583

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                        + +  R H   +Q +       + DP+   I         +R     
Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKP 642

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            S+   ++ AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R
Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y        +   + G+        +       ++  +    +    + 
Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKKAKAFID------DYLASFPGVKQYMSDI 753

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A    ++ T                                        +RR +P +
Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
             +           + RS         R+ +NT                   +Q  + DI
Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662
           +   M+        TK    ++L VHDE++ E P ++ E  +  +  +M         +P
Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861

Query: 663 LKAE 666
           LK +
Sbjct: 862 LKVD 865


>gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 694

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/622 (15%), Positives = 187/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           +D T V +++      +     + + I      ++LA     PS         A++    
Sbjct: 182 SDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAIRHDYT 238

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 239 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEENEQLALMED 294

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 295 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 353

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 354 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 398

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 399 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 442

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 443 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 502

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 503 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 559

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 560 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 596

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 597 ----------------------------------RNFNVRGF-AERTAMNTP-------- 613

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+         K    ++L VHDE++ E P+ +     
Sbjct: 614 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 663

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 664 EIVPDVMENAVE--LSVPLKVD 683


>gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
 gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
          Length = 889

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 443 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 502

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    +V   +L QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 503 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 561

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + +  DG++      
Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 614

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 753

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKALVKQTMEEAI 869

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 870 Q--LSVPLIAD 878


>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238]
 gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238]
          Length = 928

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/642 (15%), Positives = 179/642 (27%), Gaps = 158/642 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           +LK  LE+  +  +  N  ++  + K      I +     T++++ +             
Sbjct: 405 ILKPMLEDDSILKIGQNMKYDAKIFKRV---GITVDPIDDTMLMSYAMNA---------- 451

Query: 116 LKLSSQKMEEGKELIARFC-KGETHECLYDRNK---PNHREAWRLFGEYCKGDVTVTREI 171
             L+   M+   E            + L    K      R       +Y   D  +T  +
Sbjct: 452 -GLNRHSMDVLSE--QYLGHTPIPIKPLLGAGKSAITFDRVPVEEAVKYAAEDADITLRL 508

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++ L+P            + E+ L  +   +   G  VD      ++     +   L+ E
Sbjct: 509 WQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGIKVDRDTLSRMSNAFAQKMAGLEDE 568

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
           L  L  G   +     ++   LF + GL      +     T   +L            V 
Sbjct: 569 LYELAGG-KFNVGSPAQVGEILFDQMGLEGGKKGKTGKYATGADILEDLATEHGFPGLVL 627

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           + R                                 S+                  R H 
Sbjct: 628 DWRQL-------------------------------SKLKSTYTDALQTHINSETGRVHT 656

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                  +     ++DP+   I         +R   IA EGK LV  D + IE R+LA +
Sbjct: 657 SYSITGANTGRLSSTDPNLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHV 716

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A      +AF  G D++  T +  FNV   ++T D R   K +   + Y        +  
Sbjct: 717 ANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNL 776

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                   +A+ F     E  P   I      T        + +
Sbjct: 777 RI-------------------PRAEAQGFIDRYFERFP--GIRTYMDDTVA------FAK 809

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +H+RV  L+                                      +  P   +     
Sbjct: 810 EHNRVETLFGR-----------------------------------KIHTPEINAKGPGA 834

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTV 628
               R+ +N                    +Q  + D++   M+    A       ++L V
Sbjct: 835 GFAKRAAINAP------------------IQGTAADVIRRAMIRMDAAIAHLPAKMLLQV 876

Query: 629 HDEIVCETPDTDEFNASMLY-HLM--TSNPSWAKGLPLKAEG 667
           HDE+V E       +       +M   +NP     +PL  + 
Sbjct: 877 HDELVFEVDKDAAHDLIAAAREVMENAANPVVKFDVPLVVDA 918


>gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3]
 gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3]
          Length = 891

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 98/638 (15%), Positives = 202/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                +  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLEKLMDRHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +    +  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMSDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M         +PLK +
Sbjct: 845 DELIFEAPKEEIGKLEKLVPEVMEHAIELV--VPLKVD 880


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/623 (15%), Positives = 199/623 (31%), Gaps = 137/623 (21%)

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLS 119
           E+     +  ++   +  L      +I +   I   +LA     P+         A + S
Sbjct: 366 EDPQKHKIVFDAKRTKVAL---LRNNINMQGIIFDSLLASYLLNPAENNHDIPAIANRKS 422

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              ++  +E+   F KG   +         H             ++       ++ E L 
Sbjct: 423 RSDVQFDEEV---FGKGAKQKVPEADVLNEHVVRKTQLLFDLYPEMEEELGNNEQYELLK 479

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VD+     + + +    + L+QE+  L  G   +    ++L
Sbjct: 480 ELEMPLALILAEVEHYGVQVDIDKLKDMGEDLKERLSTLEQEVYELA-GETFNLNSPKQL 538

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF + GL +   T+T   T   VL   +       ++   R    +     +  L++
Sbjct: 539 GPILFEKLGLPVIKKTKTGYSTAADVLEQLENEHDIIPKLLMYRQL-GKLQSTYIEGLLK 597

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  D                               SR H   +Q +T      + +P+ 
Sbjct: 598 VVRKD------------------------------TSRIHTRYNQALTQTGRLSSIEPNL 627

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   + S +   +  AD + IE RVLA +AG++  +KAF+   D++ 
Sbjct: 628 QNIPIRLEEGRKIRQAFVPSKDNWIMFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHT 687

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+V   +VT + R   K +   + Y        +     G+        +    
Sbjct: 688 QTAMDVFHVESDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKKFI---- 740

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E + ++    +   +   + A    F+ T                             
Sbjct: 741 --ERYFNSYPGVKTYMDEIVQEAKHKGFVST----------------------------- 769

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                   I ++RR +P +  +           + RS         R+ +NT        
Sbjct: 770 --------IMKRRRYLPDITSRNF---------NMRSFA------ERTAMNTP------- 799

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+ + M++            +++L VHDE++ E P+ +    
Sbjct: 800 -----------IQGSAADIIKKAMIDLDHRLKEENLQANVLLQVHDELILEAPENEIDKL 848

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666
             +   +M +       +PLK +
Sbjct: 849 KEIVPDVMENTVE--LDVPLKVD 869


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 106/693 (15%), Positives = 217/693 (31%), Gaps = 166/693 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57
             + ID ET S        +  Y     +I  +  F +             +      ++
Sbjct: 322 KYISIDTETSS--------LDIY--TARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 371

Query: 58  KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           ++   L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A
Sbjct: 372 QKFNNLFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 429

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF--- 172
            K    K  + +++I              +N      +  +   Y   D  +T  +F   
Sbjct: 430 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIF 476

Query: 173 -KRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            K+L+       +   E     +   + + G  +D        + +  E   ++ E+   
Sbjct: 477 TKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEIIK- 535

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           + G+  +    +++   LF +  L L +  +   T  +VL S          +  +R  A
Sbjct: 536 SIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHRQIA 595

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
              +    + L+E +N                               + +R H    Q  
Sbjct: 596 KLKSTYT-DNLIELINH------------------------------KTNRLHTSFIQTK 624

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   I         +R       G   + AD + IE  +LA ++ ++  
Sbjct: 625 TATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 684

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +KAFE  +D++  T ++ F +   ++T D R I K +   + Y+       ++A   G+ 
Sbjct: 685 IKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDF---RLAKELGIT 741

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                            E+A+ F     +++                          ++ 
Sbjct: 742 ----------------KEEAKGFINSYFDSY-------------------------PKIK 760

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E                             +   ++         S   L  R      +
Sbjct: 761 EF------------------------ITNQINFVRNTGY------SETILKRRRYIKEIN 790

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
             N   R              +I+Q  + DI+   M+         K    I+L VHDE+
Sbjct: 791 SNNYLERSAAERIA-----INSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEM 845

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           + E+P  ++     +  +M    ++   LPL+A
Sbjct: 846 LIESPIKEKNEVEKILKIMMET-AYTLNLPLRA 877


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/557 (16%), Positives = 181/557 (32%), Gaps = 77/557 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
            +   E+   T++  N  ++  VLK   N  I I   +   ++A    +P         A
Sbjct: 418 FRSLFEDDTKTLIGQNIKYDFQVLK---NYGIEIKNKLFDTMVAHFLIMPEMRHNMDILA 474

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               +      + LI +  K +T                    EY   D  VT ++    
Sbjct: 475 QTYLNYSPVSIETLIGKKGKEQTS---------MRDVEIEKIKEYAAEDADVTFQLKTAF 525

Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P           +  E  L  +   I   G  +DV      +  +  +   +++E++  
Sbjct: 526 APKLIENEVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEIQDF 585

Query: 226 TYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
             G   +    +++   LF     +     T+T    T + VLS  +   P   ++    
Sbjct: 586 A-GTKFNVSSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENAHPIVSKIL--- 641

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                        +    +         P     +  R H   +
Sbjct: 642 ----------------------------DYRELVKLKNTYVDTLPELVNEKTKRIHTSFN 673

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q++       + +P+   I         +R   I  +    L+ AD + IE R++A ++G
Sbjct: 674 QVVAVTGRLSSDNPNLQNIPIRTERGRQIRKAFIPRDSDHVLLSADYSQIELRIVASISG 733

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++   +AF+ G+D++  T A+ F VA A VTK+ R   K +   + Y  GA     ++  
Sbjct: 734 DKNMCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVNFGIIYGQGAF---GLSEN 790

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             ++      L+        +       +   +     A E+ ++ T   R K+  R   
Sbjct: 791 LNISRTEAKELIDN------YFKEYGAIKSYMDRTINFARENGYVKTLLGR-KRWLRDIT 843

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDV 573
           S  + + +   +        G A    K   + +    + +N    ++L     LV+   
Sbjct: 844 SANATVRSYAERNAINAPIQGSAADMIKVAMINIYNELEKQNFKTKMLLQVHDELVFDVY 903

Query: 574 GNNRSYLNTTTRQLTRE 590
                 +     +L RE
Sbjct: 904 KPELEKVKPIIEKLMRE 920



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 24/98 (24%)

Query: 585 RQLTREYT--------YGGK-LTENIVQAVSRDILAEGMMNATKAGYD------IVLTVH 629
           ++  R+ T        Y  +      +Q  + D++   M+N             ++L VH
Sbjct: 836 KRWLRDITSANATVRSYAERNAINAPIQGSAADMIKVAMINIYNELEKQNFKTKMLLQVH 895

Query: 630 DEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           DE+V +   P+ ++    ++  LM         LPL  
Sbjct: 896 DELVFDVYKPELEKVK-PIIEKLMREA------LPLDV 926


>gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44]
 gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44]
          Length = 884

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/647 (15%), Positives = 202/647 (31%), Gaps = 156/647 (24%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D        +   + L + D+     ++   R ++   +  D+ I      L++A     
Sbjct: 357 DVALGS---EAFTKWLADEDMRKYTFDAK--RAIVALKW-KDVEIKGIDFDLLIAAYLLD 410

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
           P+       A+     KM+E   +       ++ E +Y +          +  E+    V
Sbjct: 411 PADTDKDFRAVA----KMKETHAV-------KSDEEVYGKGAKRAVPEQGVVAEHVARKV 459

Query: 166 TV----------TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            V            E  ++ E  +  E  L  +   +  +G  VD      +   +    
Sbjct: 460 HVLFDVQKTFVEELEKNEQYELFTELEMPLARVLAEMEVKGVKVDTERLRNMGDELAGRL 519

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQ 272
            +++Q++  L  G   +    ++L   LF    L +   T+T       VL         
Sbjct: 520 KEMEQKIYELA-GTEFNINSPKQLGVVLFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI 578

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              + + R    +     +  L++ ++ D                               
Sbjct: 579 IPNILHYRQL-GKLNSTYIEGLLKVVHED------------------------------S 607

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEA 386
           S+ H   +Q++T      ++DP+   I         +R   I S EG  +  AD + IE 
Sbjct: 608 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSTEGWVMYAADYSQIEL 667

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + Y     
Sbjct: 668 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFGIVYGISDY 727

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +     G+        +      E++  +    +   +   + A +  ++ T   R 
Sbjct: 728 GLSQ---NLGITRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR- 777

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
               R+    ++                                               R
Sbjct: 778 ----RRYIPEITS----------------------------------------------R 787

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG- 621
           +   R     R+ +NT                   +Q  + DI+ + M+       + G 
Sbjct: 788 NFNLRSF-AERTAMNTP------------------IQGSAADIIKKAMIIMANRLEEEGL 828

Query: 622 -YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
              ++L VHDE++ E P  +      L   +M      A  +PLK +
Sbjct: 829 QARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 873


>gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
          Length = 880

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 117/666 (17%), Positives = 218/666 (32%), Gaps = 161/666 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G D   + +   D +  P+  + L +    T     A        VL + + +
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRA-------KVLLSHYGI 388

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145
           ++P         LA+          +    +L  Q  +    E+  +  K         R
Sbjct: 389 ELPA--ATFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK---------R 437

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCV 199
             P   + +       +  +     + ++L        L   EQ L ++   +   G  V
Sbjct: 438 ALPEQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLAKMEIAGIKV 497

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET 257
           +      +    +     L QE+  L  G   +    ++L T LF + GL LE    T+T
Sbjct: 498 ERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTKT 556

Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
                  VL     + P   ++   R   S+     +  L EA+ +DG+           
Sbjct: 557 GYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK----------- 604

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
                                H    Q +T      + DP+   I         +R   +
Sbjct: 605 --------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV 644

Query: 370 ASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKD 427
                  L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT +
Sbjct: 645 PEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPN 704

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y         +A+  G++       ++T    E +   +N+      
Sbjct: 705 DRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM----- 754

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           E + +  R              + + +TI         +RR +P
Sbjct: 755 ----------------ETIVREAR-------------DKGYVETI-------YHRRRSLP 778

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
            +              + R+   R+    R+ +N+                   +Q  + 
Sbjct: 779 DI--------------NSRNFNIRNF-AERTAINSP------------------IQGSAA 805

Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660
           DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    A  
Sbjct: 806 DILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA-- 863

Query: 661 LPLKAE 666
           +PL A+
Sbjct: 864 VPLVAD 869


>gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
          Length = 878

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/578 (16%), Positives = 172/578 (29%), Gaps = 133/578 (23%)

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L       K+  Q + +   L         +   L D ++ N         E      + 
Sbjct: 403 LYKCCLCRKVKVQGIVDDVALAGYVADPGHSSYSLEDLSRRNLPGVLATPCENLLQLASK 462

Query: 168 TREI---FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            R +    ++L+     E  L  +   +   G   D  L   LN+ +     KL+   + 
Sbjct: 463 LRSLLAEQQQLKLYEEFELPLAPVLAQMEFAGITPDKELLLQLNEDMGHRIAKLEALAQE 522

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281
              G   + +  ++L   LF    L +   T+T      +VL + +   P    +  +R 
Sbjct: 523 QA-GEEFNLKSPKQLGVILFERLQLPVIKKTKTGYSTDAKVLEALEGKHPLIATILEHRK 581

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            A                               +          P   P+  R H    Q
Sbjct: 582 LA-------------------------------KLQSTYLEGLQPLINPKTGRIHTHFQQ 610

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGE 395
            +T      ++DP+   I      S  +R   +   G   L+  D + +E R+LA +A +
Sbjct: 611 TVTVTGRLSSTDPNLQNIPARTEESRQIRRIFVPGAGYDLLMSCDYSQVELRILACIAQD 670

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF  G+D++  T A  F V   +VT   R+  K +   + Y         +A   
Sbjct: 671 ELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRSRAKAVNFGIVYGISDF---GLAKQL 727

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +     A  + +                                               
Sbjct: 728 DVGRKEAAGYIASYF--------------------------------------------E 743

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVG 574
           R + +   +     +  E G       RR                 LP  RS  +     
Sbjct: 744 RYTGVKKYMEDIVAEAREQGYVSTLMGRRRY---------------LPEIRSSNFNLRSF 788

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
             R+ +NT                   +Q  + DI+ + M+   +          I+L V
Sbjct: 789 AERTAINTP------------------IQGTAADIMKKAMIAVQRELDKAQCKSRILLQV 830

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E  + ++   + L        + +  +PL A+
Sbjct: 831 HDELVLEVTEDEKEQVAQLVRTAMEGAA-SLDIPLLAD 867


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 110/670 (16%), Positives = 212/670 (31%), Gaps = 157/670 (23%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +   +++      ++     +A  +  V I      F+R+ 
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           VL +   +D+P         LA+          +    +L +    E  E++        
Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192
           +     R  P          +  K        + ++L        L   E  L  +   +
Sbjct: 430 YGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKM 489

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD    + +         KL Q++  +  G   +    ++L   LF + GL LE
Sbjct: 490 EMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548

Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
               T+T     +   ++L P A  V                               L++
Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              ++             L    + H    Q +T      + DP+   I         +R
Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              + S +   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T      + +     +
Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              +N    A    ++ T                                        +R
Sbjct: 751 AYMDNVVREAKNKGYVSTLF-------------------------------------HRR 773

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R++P +              + R+   R+    R+ +N+                   +Q
Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800

Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656
             + DIL   M+N  KA    GY   ++L VHDEI+ E P  +      L    M +   
Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEAAVE 860

Query: 657 WAKGLPLKAE 666
            A  +PL A+
Sbjct: 861 LA--VPLIAD 868


>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
 gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
          Length = 933

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/562 (14%), Positives = 155/562 (27%), Gaps = 83/562 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LE+  +  +  N  ++  +         PI   +        +G          
Sbjct: 409 DLLKPMLEDPAILKIGQNMKYDAKIFARYGVAVAPIDDTMLLSY--AMHGGLHGHGMDTL 466

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +  S      K L+       T + +          A      Y   D  +T  +++ 
Sbjct: 467 SERYLSHTPIPIKPLLGSGKSAITFDKV----------AIDEATAYAAEDADITLRLWQL 516

Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +P   +          E+ L  +   +   G  VD  +   ++     +   L+ E+  
Sbjct: 517 FKPQLHRAQVTTVYETLERPLVPVLAEMEMHGVKVDREVLSRMSNAFAQKMAGLEAEIHE 576

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +     ++   LF +  L      +    +T   VL           ++ + R
Sbjct: 577 LA-GEPFNVGSPAQVGEILFDKMSLEGGKKGKTGKYSTPADVLEDLATEHELPARILDWR 635

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+              P   R H    
Sbjct: 636 QL-------------------------------SKLKSTYTDALQTHINPDTGRVHTSYS 664

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
               +     ++DP+   I         +R   +A  G  L+  D + IE R+LA +A  
Sbjct: 665 ITGANTGRLASTDPNLQNIPVRTEEGRRIREAFVAEPGNVLLSLDYSQIELRILAHIADI 724

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G D++  T +  F+V   Q+T + R   K +   + Y         +A   
Sbjct: 725 PALKQAFADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINFGVIYGISGF---GLARNL 781

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +        +      E +     +         EH       G      +   +  H+
Sbjct: 782 RIPRAEAQEFID--RYFERFPGIRTYMDDTIAFAKEHGFVQTLFGRRIHTPEINAKGPHA 839

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             +       +A       G A    +R  V +    +D       LP+   L   D   
Sbjct: 840 GFA------RRAAINAPIQGTAADVIRRAMVRMPDAIRD-------LPAKMLLQVHDELL 886

Query: 576 NRSYLNT--TTRQLTREYTYGG 595
                     T    R+   G 
Sbjct: 887 FEVAEEAVEDTIAAARDIMEGA 908


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/623 (15%), Positives = 187/623 (30%), Gaps = 135/623 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           LE+  V     N    RT++   +     I      +++A     P+ A   +    KL 
Sbjct: 360 LEDGRVKKTVFNGK--RTIVSLKWA-GHEIKGIEHDVMIASYILNPAEANDDLATIAKLK 416

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                +  E +  + KG             H         Y K  +       ++ E   
Sbjct: 417 GYHQVQSDEAV--YGKGAKRSIAEADQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFE 474

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +  +G  +D A    + + +  +  K++ ++     G   +    ++L
Sbjct: 475 KLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYA-GQEFNINSPKQL 533

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL           ++   R    +     +  L +
Sbjct: 534 GVVLFEKMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQL-GKLQSTYIEGLKK 592

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++                                  + H   +Q +T      + DP+ 
Sbjct: 593 VIHESD------------------------------GKVHTRFNQTLTQTGRLSSVDPNL 622

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   + S  G  +  AD + IE RVLA +A ++  + AF+   D++ 
Sbjct: 623 QNIPIRLEEGKKIRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHT 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+V   +VT + R   K +   + Y        +   + G+     A  +    
Sbjct: 683 KTAMDVFHVEREEVTANMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKAAATFI---- 735

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E +  +    +   +     A E  ++ T   R     R+    ++            
Sbjct: 736 --ERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHR-----RRYLPEITS----------- 777

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                                              R+   R     R+ +NT        
Sbjct: 778 -----------------------------------RNFNLRSF-AERTAMNTP------- 794

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+ + M+   K          ++L VHDE++ E P+ +    
Sbjct: 795 -----------IQGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKIL 843

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666
             +   +M +       +PLK +
Sbjct: 844 EKIVPEVMENALE--LEVPLKVD 864


>gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
 gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
          Length = 875

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           ++ T V +++      +     + + I      ++LA     PS         A++    
Sbjct: 363 SEQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVAD----LEENEQLALMED 475

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 476 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+         K    ++L VHDE++ E P+ +     
Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/504 (16%), Positives = 156/504 (30%), Gaps = 131/504 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G  V+  +   +   ++ +  KL  E+  L  G   +    ++ 
Sbjct: 526 DVELPLAPILGSMEWIGIKVNPKVLQDMAGELNSDIQKLQAEIHELA-GETFNINSTQQF 584

Query: 240 KTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF + GL +   T+T       VL       P   +V   R                
Sbjct: 585 GKILFEKLGLPVIKRTKTGYSTDVEVLEELSDRHPIVPKVLEFRQLM------------- 631

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                             +          P       R H   +Q +T      +++P+ 
Sbjct: 632 ------------------KLKSTYVEGLLPLIDGPEGRIHTSFNQSVTATGRLSSTEPNL 673

Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   IA E G  L+ AD + IE R+LA ++ +     AF   +D++ 
Sbjct: 674 QNIPVRLEQGRHIRKAFIAPEPGWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHT 733

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F+V    VT++ R   K +   + Y         ++   G+        ++   
Sbjct: 734 RTASEVFDVPMGNVTREMRRRAKAVNFGIVYGISDF---GLSRDLGVTRGEAKEYIEGY- 789

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                  +R+ H     +   + +   +
Sbjct: 790 ---------------------------------------FRRYH----GVRGYIDRIIAE 806

Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
             + G    +  +RR +P +++K                  R     R+ +NT       
Sbjct: 807 ARQQGFVTTLLGRRRRLPDLFVKNK---------------IRQNFGERTAMNTP------ 845

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+   KA  D      ++L VHDE++ E P+ +   
Sbjct: 846 ------------IQGTAADIIKAAMVKIPKALKDHGLKTRMLLQVHDELIFEVPEEELTV 893

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
            A ++  +M         +PL  +
Sbjct: 894 VAPLIKRIMEKTIE--ISVPLTVD 915


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 106/693 (15%), Positives = 217/693 (31%), Gaps = 166/693 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57
             + ID ET S        +  Y     +I  +  F +             +      ++
Sbjct: 341 KYISIDTETSS--------LDIY--TARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 390

Query: 58  KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           ++   L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A
Sbjct: 391 QKFNNLFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF--- 172
            K    K  + +++I              +N      +  +   Y   D  +T  +F   
Sbjct: 449 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIF 495

Query: 173 -KRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            K+L+       +   E     +   + + G  +D        + +  E   ++ E+   
Sbjct: 496 TKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEIIK- 554

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           + G+  +    +++   LF +  L L +  +   T  +VL S          +  +R  A
Sbjct: 555 SIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHRQIA 614

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
              +    + L+E +N                               + +R H    Q  
Sbjct: 615 KLKSTYT-DNLIELINH------------------------------KTNRLHTSFIQTK 643

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   I         +R       G   + AD + IE  +LA ++ ++  
Sbjct: 644 TATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +KAFE  +D++  T ++ F +   ++T D R I K +   + Y+       ++A   G+ 
Sbjct: 704 IKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDF---RLAKELGIT 760

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                            E+A+ F     +++                          ++ 
Sbjct: 761 ----------------KEEAKGFINSYFDSY-------------------------PKIK 779

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E                             +   ++         S   L  R      +
Sbjct: 780 EF------------------------ITNQINFVRNTGY------SETILKRRRYIKEIN 809

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
             N   R              +I+Q  + DI+   M+         K    I+L VHDE+
Sbjct: 810 SNNYLERSAAERIA-----INSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEM 864

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           + E+P  ++     +  +M    ++   LPL+A
Sbjct: 865 LIESPIKEKNEVEKILKIMMET-AYTLNLPLRA 896


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 107/648 (16%), Positives = 210/648 (32%), Gaps = 150/648 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I      D   +   D          L     N ++    +N   +   LK     +I 
Sbjct: 337 IIYIFISVDGEKIYYVDSNEVSK----LDSIFSNNEIKKYGYNLKDDYISLKPY---NIN 389

Query: 90  IHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           +      + ++         ++      A+K  S+K++  +EL+ +  K + +E L   +
Sbjct: 390 LENMYFDITISEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFED 449

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVD 200
              +        +          E  + L  +S        E  L  +   +   G  VD
Sbjct: 450 LAEYMGQIICTVKE----TVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVD 503

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
            ++   L+         L++E+  L+ G   +    ++L   LF +  L +   T+T   
Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELS-GEPFNINSPKQLGVILFEKLELPIIKKTKTGYS 562

Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               VL   +   P   ++   R    +     +  L+  +N                  
Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQ-IVKLNSTYVEGLLNIIN------------------ 603

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372
                       P  +R H   +Q IT      +++P+   I         +R   IA +
Sbjct: 604 ------------PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADD 651

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             KLV AD + +E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   
Sbjct: 652 NCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA 711

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y         +A    + +      +++                        
Sbjct: 712 KAVNFGIIYGKSDF---GLADDLNIPVPKAKEYIES------------------------ 744

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551
                            +  K+ ++ E    +    E+  E+G A+ I  +RR +P +  
Sbjct: 745 -----------------YFAKYHKIKEF---MDTTVEKASEDGYAVTILNRRRYIPEI-- 782

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
            K  N +                  R  +N                    +Q  + DI+ 
Sbjct: 783 -KSSNFMERN------------RGKRFAMNAP------------------IQGSAADIIK 811

Query: 612 EGMMNATKAGYD------IVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
             M+N  K   +      ++L VHDE++ E   D  +    ++   M 
Sbjct: 812 IAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEME 859


>gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
 gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
          Length = 882

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/662 (15%), Positives = 193/662 (29%), Gaps = 155/662 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKAC 83
           AE+  +      F    +      +   M + L EAL +  V   A     F+       
Sbjct: 345 AENAEIGGIGISFGKEKIYCIPAGNGYSM-EELLEALVH--VAKHAGRFVVFDLKSSLPY 401

Query: 84  F-NLDIPIHRWICTLVLARSNGLPS----ALKAVG-EALKLSSQKMEEGKELIARFCKGE 137
              L+          ++A     P       + V  E L L      E ++++       
Sbjct: 402 LKGLEGAAEEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLMIDPKTELEKMVCYEAYAA 461

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
                    K    E W+LF E                      E  L +    +   G 
Sbjct: 462 FASSEVLEEKLKKEEMWKLFTEI---------------------EMPLVFTLFHMEQNGV 500

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            V+     +  + +  +  +L++E+  L  G   +    ++L   LF    L     T+T
Sbjct: 501 RVEAEELKSYGEQLGGKIVQLEKEIYELA-GEEFNINSPKQLGVVLFEHLSLPNGKKTKT 559

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
                     KL P    V                               L++   ++  
Sbjct: 560 GYSTAADVLDKLAPDYPIVAK----------------------------ILEYRQLAKLK 591

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE 372
                           R H + +Q +T      +++P+   I     +   +R   +  E
Sbjct: 592 STYADGLAVFIHEDDHRIHGKFNQTVTATGRISSTEPNLQNIPARVELGRLIRKVFVPEE 651

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G   V AD + IE RVLA  +G+   ++A+   +D++  T ++ F+    +VT  QR   
Sbjct: 652 GYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTDLQRRNA 711

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y   +    +      +     A  +                          
Sbjct: 712 KAVNFGIVYGISSFGLSQ---DLSITRKEAAEYIDRYF---------------------- 746

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551
                              + +  + +    L  A     E G  + +  +RR VP +  
Sbjct: 747 -------------------ETYPGIKKF---LDDAVAHAKEQGYVVTLFGRRRPVPEL-- 782

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                       S  + + R  G  R  +N+                   +Q  + DI+ 
Sbjct: 783 ------------SSSNFMQRQFGE-RVAMNSP------------------IQGTAADIMK 811

Query: 612 EGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664
             M+   K          +VL VHDE++ ET   +E     +L   M         +PL+
Sbjct: 812 IAMIAVDKELRMRNMKSRLVLQVHDELLIETWKEEEEEVREILKEGMMHAAD--LSVPLE 869

Query: 665 AE 666
            +
Sbjct: 870 ID 871


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/534 (17%), Positives = 160/534 (29%), Gaps = 133/534 (24%)

Query: 153 AWRLFGEYCKGDVTVTR-EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           AW          V   R E  + L    + E  L  +   +   G  VD    H  ++ +
Sbjct: 435 AWCAVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREI 494

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC------QRVLSS 265
             +   L  E+  L  G   +    ++L   LF    L     T+ T         VL +
Sbjct: 495 SAQIAHLTAEIYDLAKG-EFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEA 553

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +   P   ++ + R                                 ++          
Sbjct: 554 MRFDHPILEKILSYRF-------------------------------WTKLQSTYLDSME 582

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVA 379
               PR  R H   +Q +T      +S+P+   I         +R+    S+G   L+ A
Sbjct: 583 GLISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPSDGYDALMSA 642

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++ ++  L+AF  G+D++  T +  F V    VT D R   K +   +
Sbjct: 643 DYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGI 702

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y         ++    ++    A  + +  A        +  +   +   E A +D F+
Sbjct: 703 VYGISDY---GLSKDLHISRQEAADYIASYFAKC------SGIKRFIDGVVEKAHKDGFV 753

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T   R                                                      
Sbjct: 754 TTIFGR-----------------------------------------------------R 760

Query: 560 LMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
             LP+ +S  Y       R  +NT                   +Q  + DI+   M+   
Sbjct: 761 RDLPAIKSSNYNQRTLAERMAMNTP------------------IQGSAADIIKLAMIKTH 802

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           +A         I+L VHDE+V E    ++   + L      N      +PL  +
Sbjct: 803 RALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVRDAMENIV-QLSVPLSVD 855


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/534 (17%), Positives = 160/534 (29%), Gaps = 133/534 (24%)

Query: 153 AWRLFGEYCKGDVTVTR-EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           AW          V   R E  + L    + E  L  +   +   G  VD    H  ++ +
Sbjct: 436 AWCAVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREI 495

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC------QRVLSS 265
             +   L  E+  L  G   +    ++L   LF    L     T+ T         VL +
Sbjct: 496 SAQIAHLTAEIYDLAKG-EFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEA 554

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +   P   ++ + R                                 ++          
Sbjct: 555 MRFDHPILEKILSYRF-------------------------------WTKLQSTYLDSME 583

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVA 379
               PR  R H   +Q +T      +S+P+   I         +R+    S+G   L+ A
Sbjct: 584 GLISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPSDGYDALMSA 643

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++ ++  L+AF  G+D++  T +  F V    VT D R   K +   +
Sbjct: 644 DYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGI 703

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y         ++    ++    A  + +  A        +  +   +   E A +D F+
Sbjct: 704 VYGISDY---GLSKDLHISRQEAADYIASYFAKC------SGIKRFIDGVVEKAHKDGFV 754

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T   R                                                      
Sbjct: 755 TTIFGR-----------------------------------------------------R 761

Query: 560 LMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
             LP+ +S  Y       R  +NT                   +Q  + DI+   M+   
Sbjct: 762 RDLPAIKSSNYNQRTLAERMAMNTP------------------IQGSAADIIKLAMIKTH 803

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           +A         I+L VHDE+V E    ++   + L      N      +PL  +
Sbjct: 804 RALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVRDAMENIV-QLSVPLSVD 856


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/512 (18%), Positives = 166/512 (32%), Gaps = 79/512 (15%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + G      ++ A+ E L L          L+A        T E +  
Sbjct: 336 PEPYKALRDLKEARGFLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 392

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E      T++  +F  L      E+ L +L              + 
Sbjct: 393 R----YGGEW---TEEAGERATLSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 445

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 446 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHSFNLNSRDQLERVLFDELGLPAIG 504

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            TE T +R     VL + ++  P   ++                                
Sbjct: 505 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 533

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363
           Q+   ++         P    PR  R H   +Q  T      +SDP+   I     +   
Sbjct: 534 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 593

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    
Sbjct: 594 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 653

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +   + Y   A    +++    +        +        +  +    R
Sbjct: 654 VDPLMRRAAKTINFGVLYGMSA---HRLSQELAIPYEEAQAFI------GRYFQSFPKVR 704

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              E   E      ++ T   R ++      +RV  +     +        G A    K 
Sbjct: 705 AWIEKTLEEGRRRGYVETLFGR-RRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKL 763

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             V  ++ + ++    ++L     LV      
Sbjct: 764 AMVK-LFPRLEEMGARMLLQVHDELVLEAPKE 794


>gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
 gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
          Length = 880

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 117/668 (17%), Positives = 214/668 (32%), Gaps = 165/668 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85
            ++  A+G D   + +   D +  P+  + L K AL+  D+            VL + + 
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLAKTALKTYDLKRT--------KVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144
           +++P         LA+          +    +L  Q  +    E+  +  K         
Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436

Query: 145 RNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYC 198
           R  P   + +       +  +              +L+ L   EQ L ++   +   G  
Sbjct: 437 RALPEQEQLFEHLARKVQVLLETEEPMKDQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIK 496

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256
           V+      +    +     L QE+  L  G   +    ++L T LF + GL LE    T+
Sbjct: 497 VERETLQGMQVENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLSLEYTKKTK 555

Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           T       VL     + P   ++   R   S+     +  L EA+ +DG+          
Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                 H    Q +T      + DP+   I         +R   
Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643

Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
           +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT 
Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTP 703

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A+  G++       ++T                  
Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF---------------- 744

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRD 545
                                        R   + N +     +  + G    I  +RR 
Sbjct: 745 ----------------------------ERFPGIKNYMETIVREARDKGYVETIYHRRRS 776

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +P +              + R+   R+    R+ +N+                   +Q  
Sbjct: 777 LPDI--------------NSRNFNIRNF-AERTAINSP------------------IQGS 803

Query: 606 SRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA 658
           + DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    A
Sbjct: 804 AADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA 863

Query: 659 KGLPLKAE 666
             +PL A+
Sbjct: 864 --VPLVAD 869


>gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
 gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
          Length = 884

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 113/679 (16%), Positives = 207/679 (30%), Gaps = 146/679 (21%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
              G   +  D+  ++FA           D +        ++  L + +     H+ +  
Sbjct: 327 ETHGDNPHHADIVGLIFA-ATGQQFFMTLDVLQSDAATP-IRAWLADPERKKRGHDLH-- 382

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIAR 132
           RT L   ++  I        + LA     P      L  +     LSS + +E       
Sbjct: 383 RTDLALHWH-GIEFAGAEFDVQLAGYLLDPTDANQTLSGLAAKYGLSSIRPDE-----EV 436

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCK--GDVTVTR-EIFKRLEPLSSKEQELWYLD 189
           F KG  ++        +H        E         + + E+ K    L   E  L  + 
Sbjct: 437 FGKGAKYKVPDVDVLSDHVARKAAVIEALVPVQQAELEKTEMHKLFHEL---EMPLSRIL 493

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  +G  V+V     L +  + +   L  E+ S+  G+  +    ++L   LF + GL
Sbjct: 494 ADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSIA-GVEFNLNSPKQLGEILFDKLGL 552

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            +   T+T         +KL P                                ++  LQ
Sbjct: 553 PVIKKTKTGYSTDAEVLEKLAPY----------------------------HDIVQNILQ 584

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364
           +   ++           +   +  + H    Q +       +  P+   I         +
Sbjct: 585 YRTIAKLQSTYVEGLLKEISGKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRKI 644

Query: 365 RSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R   + SE G  ++ AD + IE RVLA ++ ++   +AF    D++  T +  F VA   
Sbjct: 645 RKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVFGVAAED 704

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V  + R   K +   + Y        +      +     A  +       ++ D     R
Sbjct: 705 VDSNMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAARFID------QYFDVFQGVR 755

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              ++  + A  D ++                                    K ++ R+R
Sbjct: 756 RYMDDIVKDAKRDGYV------------------------------------KTLLERRR 779

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                             LP   +  +       R+ +NT                   +
Sbjct: 780 Y-----------------LPEINASNFNLRSFAERTAMNTP------------------I 804

Query: 603 QAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+   K          ++L VHDE+V E P  +      L    M +  
Sbjct: 805 QGTAADIIKLAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAAL 864

Query: 656 SWAKGLPLKAE-GYESKRY 673
             A  +PLKAE  Y S  Y
Sbjct: 865 ELA--VPLKAEVSYGSNWY 881


>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
 gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
          Length = 891

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L N ++     ++   R ++   +N  I I      L++A     P+       
Sbjct: 370 DAFKEWLANGEMRKHTFDAK--RAIVALKWN-GIDIQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FIEELEKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                                + H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SCKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG
           18311]
          Length = 879

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 110/670 (16%), Positives = 212/670 (31%), Gaps = 157/670 (23%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +   +++      ++     +A  +  V I      F+R+ 
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           VL +   +D+P         LA+          +    +L +    E  E++        
Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192
           +     R  P          +  K        + ++L        L   E  L  +   +
Sbjct: 430 YGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKM 489

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD    + +         KL Q++  +  G   +    ++L   LF + GL LE
Sbjct: 490 EMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548

Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
               T+T     +   ++L P A  V                               L++
Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              ++             L    + H    Q +T      + DP+   I         +R
Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              + S +   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T      + +     +
Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              +N    A +  ++ T                                        +R
Sbjct: 751 AYMDNVVREAKDKGYVSTLF-------------------------------------HRR 773

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R++P +              + R+   R+    R+ +N+                   +Q
Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800

Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656
             + DIL   M+N  KA    GY   ++L VHDEI+ E P  +      L    M     
Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEDAVE 860

Query: 657 WAKGLPLKAE 666
            A  +PL A+
Sbjct: 861 LA--VPLIAD 868


>gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23]
 gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23]
          Length = 875

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           ++ T V +++      +     + + I      ++LA     PS         A++    
Sbjct: 363 SEQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVAD----LEENEQLALMED 475

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 476 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEAFNINSPKQLG 534

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+         K    ++L VHDE++ E P+ +     
Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864


>gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
 gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
          Length = 877

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 431 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 490

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    +V   +L QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 491 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + +  DG++      
Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 602

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 698 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 798 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAI 857

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 858 Q--LSVPLIAD 866


>gi|332364956|gb|EGJ42724.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK355]
          Length = 880

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/677 (17%), Positives = 218/677 (32%), Gaps = 171/677 (25%)

Query: 28  VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75
             ++        + +  + D     V   D +  P+  + L K AL+  D+         
Sbjct: 326 FEILGDNYHKEEIVSLAWGDSRQIYVGTSDLLQQPLFQEFLTKTALKTYDLKRT------ 379

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134
              VL + + +++P         LA+          +    +L  Q  +    E+  +  
Sbjct: 380 --KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYL 188
           K         R  P     +       +  +              +L  L   EQ L ++
Sbjct: 436 K---------RALPEQERLFEHLARKVQVLLETEEPMLEQLRAHDQLNLLLEMEQPLAFV 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V+      +    +     L QE+  L  G   +    ++L T LF + G
Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545

Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           L LE    T+T       VL     + P   ++   R   S+     +  L EA+ +D +
Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADSK 604

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +                               H    Q +T      + DP+   I    
Sbjct: 605 I-------------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRL 633

Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F
Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVF 693

Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +     VT + R   K +   + Y         +A+  G++       ++T    E + 
Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             +N+                      E + +  R              + + +TI    
Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                +RR +P +              + R+   R+    R+ +N+              
Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799

Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYH 649
                +Q  + DIL   M+N  +A         ++L VHDEIV E P+ +      ++  
Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKA 854

Query: 650 LMTSNPSWAKGLPLKAE 666
            M +    A  +PL A+
Sbjct: 855 TMEAAIELA--VPLVAD 869


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 112/670 (16%), Positives = 213/670 (31%), Gaps = 157/670 (23%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +   +++      ++     +A  +  V I      F+R+ 
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           VL +   +D+P         LA+          +    +L +    E  E++        
Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192
           +     R  P          +  K        + ++L        L   E  L  +   +
Sbjct: 430 YGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKM 489

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD    + +         KL Q++  +  G   +    ++L   LF + GL LE
Sbjct: 490 EMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548

Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
               T+T     +   ++L P A  V                               L++
Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              ++             L    + H    Q +T      + DP+   I         +R
Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              + S +   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T      + +     +
Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              +N    A +  ++ T                                        +R
Sbjct: 751 AYMDNVVREAKDKGYVSTLF-------------------------------------HRR 773

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R++P +              + R+   R+    R+ +N+                   +Q
Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800

Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656
             + DIL   M+N  KA    GY   ++L VHDEIV E P  +      L    M S   
Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPSDELLAMKALVKETMESAVE 860

Query: 657 WAKGLPLKAE 666
            A  +PL A+
Sbjct: 861 LA--VPLIAD 868


>gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99]
          Length = 885

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           ++ T V +++      +     + + I      ++LA     PS         A++    
Sbjct: 373 SEQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 429

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 430 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVAD----LEENEQLALMED 485

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 486 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEAFNINSPKQLG 544

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 545 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 589

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 590 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 633

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 634 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 693

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 694 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 750

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 751 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 787

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 788 ----------------------------------RNFNVRGF-AERTAMNTP-------- 804

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+         K    ++L VHDE++ E P+ +     
Sbjct: 805 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 854

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 855 EIVPDVMENAVE--LSVPLKVD 874


>gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
 gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
          Length = 889

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/664 (18%), Positives = 204/664 (30%), Gaps = 164/664 (24%)

Query: 33  FAFGFDDH--PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIP 89
           FA+   D     +  + + DP    +LKE LE T + +        + +L     NL  P
Sbjct: 349 FAWSCGDKLYATDKLELLQDP----ILKEFLEKTSLKVYDFKKA--KVLLNRLGLNLQAP 402

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC-LYDRNKP 148
                    LA+          +     L  Q               ET       +  P
Sbjct: 403 ----AFDSRLAKYLLSTVENNEISTIANLYGQT---------YLADDETFYGKGVKKAIP 449

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
              +            V     + ++L        L   EQ L ++   +   G  V   
Sbjct: 450 EREKFLEHLARKVAVLVETEPVLLEKLGEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKE 509

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQ 260
               +    ++   KL QE+  L  G   +    ++L   LF + GL LE    T+T   
Sbjct: 510 TLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTGYS 568

Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               VL     + P   ++ + R  A   +   +  L + +  DG++             
Sbjct: 569 TAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VVGLQDWILDDGKI------------- 614

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS- 371
                             H    Q +T      + DP+   I         +R   +   
Sbjct: 615 ------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEW 656

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y         +++  G++       + T                      
Sbjct: 717 NAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF-------------------- 753

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                                    R   + N + +   +  + G      KRR      
Sbjct: 754 ------------------------ERFPGIKNYMDEVVREARDKGYVETLFKRR------ 783

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                      LP   S  +   G   R+ +N+                   +Q  + DI
Sbjct: 784 ---------RELPDINSRNFNIRGFAERTAINSP------------------IQGSAADI 816

Query: 610 LAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLP 662
           L   M+   KA    GY   ++L VHDEIV E P ++     +L    M         +P
Sbjct: 817 LKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEAIQ--LSVP 874

Query: 663 LKAE 666
           L A+
Sbjct: 875 LIAD 878


>gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
 gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
          Length = 876

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/664 (15%), Positives = 202/664 (30%), Gaps = 147/664 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F  +     +     D    + L + LE+ + T + +++  +  V    
Sbjct: 328 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             ++I        ++LA     P  ++  V   + L  Q     K+ I  F KG+ H   
Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 439

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198
            +     H              VT T     E + ++E L   E  L  +   + + G  
Sbjct: 440 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            D+     +   +  +   L   +   + G   +    ++L   LF    L +   T+T 
Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554

Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 VL   +   P    +   R  A                               +
Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 583

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                        + +  R H   +Q +       + DP+   I         +R     
Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 642

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            S+   ++ AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R
Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y        +   + G+        +       ++  +    +    + 
Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 753

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A    ++ T                                        +RR +P +
Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R++  R     R+ +NT                   +Q  + DI
Sbjct: 777 TS--------------RNVNLRSF-AERTAMNTP------------------IQGSAADI 803

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662
           +   M+        TK    ++L VHDE++ E P ++ E  +  +  +M         +P
Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861

Query: 663 LKAE 666
           LK +
Sbjct: 862 LKVD 865


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/567 (16%), Positives = 176/567 (31%), Gaps = 80/567 (14%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           + E    + F    D   + L D +        LK  LE+  V  VA N+ ++  VL   
Sbjct: 430 HCEKADGLAFEAPADIEQIPLADVIA------TLKPLLEDPAVLKVAQNAKYDIAVLARH 483

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
                PI   +    +  +      +  + E       K    K++     KG+      
Sbjct: 484 GIQVAPIEDTMLISYVLEAGLHGHGMDELSELH--LGHKPIPFKQVAGSG-KGQIS---- 536

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIN 193
                    A      Y   D  VT  ++  L+P  ++          E+ +  +   + 
Sbjct: 537 -----FKHVALPEATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMME 591

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
           + G  VD      L+    +   + +   + L  G   +    +++   LF E  +    
Sbjct: 592 NNGVRVDPEALRLLSNEFSLRMAQFEARAQEL-VGRPFNLGSPKQIGDVLFGEMQMKGGK 650

Query: 254 LTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            T T    T   VL S      +  +V  +  + S+        L+ A+           
Sbjct: 651 KTATGQWSTDSDVLESLALEH-ELPRVLLDWRQLSKLKGTYTENLIAAIA---------- 699

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364
                               P   R H       T      +SDP+   I         +
Sbjct: 700 --------------------PSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKI 739

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A+ G  L+ AD + IE R+LA +       KAF+ G D++  T +  F+     +
Sbjct: 740 RKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGM 799

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   K +   + Y   A     +A+  G++       +KT    E +   + +   
Sbjct: 800 DPMIRRRAKAINFGIVYGISAF---GLANQLGISQGEAGAYIKT--YFERFPGIQAYMDA 854

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
            +    EH       G      K       ++ +       +A       G A    +R 
Sbjct: 855 TKAFVREHGYVTTIFGR-----KINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRA 909

Query: 545 DVPLVYMKKDKN-NLILMLPSGRSLVY 570
            + +    +    +  ++L     LV+
Sbjct: 910 MIRMPVALEAAGLSTRMLLQVHDELVF 936


>gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437]
          Length = 881

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/638 (16%), Positives = 190/638 (29%), Gaps = 165/638 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA----- 115
           L + D T V ++       LK    L+     W   L     N   S  +          
Sbjct: 366 LRDPDRTKVCYDVKATEVALKHQ-GLETDGFAWDILLSSYLINASESGHELSEIVDRKWG 424

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L       GK                 R +P  +E                R I  RL
Sbjct: 425 GGLPDDDAVYGK--------------GVKRRRPEGKELAEHLARKA-------RAIH-RL 462

Query: 176 EPLSSKEQ--------------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +PL  +E                L  +   +  +G  VD     +L + +     +L ++
Sbjct: 463 QPLLEEELKENGLDSLYLDLELPLARVLAKMEWQGVQVDRDRLQSLGEELKGRLEELTEK 522

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  L  G   +    ++L   LF + GL +   T+T         +KL PQ   V     
Sbjct: 523 IFELA-GTEFNINSPKQLGEILFDKLGLPVLKKTKTGYSTSADVLEKLAPQHEIVEE--- 578

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                     L +    +           +      + H   +Q
Sbjct: 579 -------------------------ILHYRQVGKLISTYVEGLLKEIDGETGKIHTRFNQ 613

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGE 395
            I       ++DP+   I         +R   + SE    ++ AD + IE RVLA ++G+
Sbjct: 614 AIAATGRLSSTDPNLQNIPIRLEEGRRIRQVFVPSEEEWLMLSADYSQIELRVLAHLSGD 673

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V+  +VT   R   K +   + Y        +     
Sbjct: 674 ENLIEAFQKELDVHTKTAMDVFGVSADEVTPWMRRHAKAVNFGIVYGISDYGLSQ---NL 730

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +     A  ++       + D+    +   E+    A  D ++ T              
Sbjct: 731 NIPRKEAAEFIQ------RYFDSYPGVKRYMEDIVRQAKADGYVTTML------------ 772

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                     +RR++P +              + R+   R    
Sbjct: 773 -------------------------HRRRELPEI--------------NSRNFNRRSF-A 792

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+              ++L VH
Sbjct: 793 ERTAMNTP------------------IQGTAADIIKKAMVEMDSVLEKEGLRARLLLQVH 834

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ ETP  +      L   +M S    A  +PL+ +
Sbjct: 835 DELIFETPAEEMEALDNLVRRVMESAVELA--VPLQVD 870


>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
 gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
          Length = 871

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/545 (16%), Positives = 163/545 (29%), Gaps = 72/545 (13%)

Query: 35  FGFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           F  +   V +++   DP    + L+  LEN ++  + HN  F   VLK            
Sbjct: 341 FVANGEDVYVFEMEQDPRAALEKLRAFLENEEIGKLVHNGKFIEVVLKRY--------GL 392

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
               V   +  L   L        LS        E++              +      E 
Sbjct: 393 KFDGVRGDTLLLSYVLDPGFSGETLSEHLFHYLGEVVDEKMDPGLAVRGLKKLHQVLEEK 452

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                      V                E  L  +   +   G  VD  +   ++Q + +
Sbjct: 453 LGSQDLVNLYKVV---------------ELPLSPVLADMEFTGIKVDPRILAEISQELAL 497

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
              +    +  +  G   +     +L   LF + GL     T+T         ++L    
Sbjct: 498 RIAEDQARIYQVA-GQEFNINSTRQLGKVLFEDLGLPPVKKTKTGYSTSAEVLEELY--- 553

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
                                     S   +   +++   ++        FP    P   
Sbjct: 554 -------------------------GSHEIIEHIVEYRTLAKLKSTYVDTFPGYIHPETG 588

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387
           R H    Q +T      + +P+   I         +R   +   E   L+  D + I+ R
Sbjct: 589 RVHTVFKQAVTATGRLSSVEPNLQNIPIRMEEGRRIRKAFVPGDENHILLSCDYSQIDLR 648

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
            LA M+G++  ++ F  G D++  T +  F V   QVT D R   K +   + Y      
Sbjct: 649 SLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNFGIVYGISDF- 707

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +A  TG+        +      E + D+    R   +       E  ++ T   R +
Sbjct: 708 --GLARGTGVTREEAKAYI------ERYLDSYPGVRRYMQEVVAMGREKGYVSTVLGR-R 758

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSG 565
           +      S    + +   +        G +    K   +  VY +  + NL   ++L   
Sbjct: 759 RYLPDLLSSNRTVRSMAERMALNAPIQGTSADIIKLAMLS-VYRELKRRNLRSRMLLQVH 817

Query: 566 RSLVY 570
             LV+
Sbjct: 818 DDLVF 822


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/686 (16%), Positives = 218/686 (31%), Gaps = 164/686 (23%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVA 70
           D    G+        +++ +F  ++          D      + Q L   + N+++  +A
Sbjct: 371 DTETDGLNP--LTASIVVASFAPEEGEAYYLPLPQDFDEACAILQPLDALMRNSEILKMA 428

Query: 71  HNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            N+ F++ +L     +   P+   +    L         L  + E           G   
Sbjct: 429 QNAKFDQKLLARYGVSSATPLFDTLVAHYLIAP-DQRHNLDTLAEQY--------LGYRT 479

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL---W 186
           IA     E       R+         L  +Y   D  V R ++  L     +EQ+    W
Sbjct: 480 IAYSDLSEKKNFDLRRDVAE-----ELLVDYAAEDADVVRRLYPLLREKLEQEQQEKLFW 534

Query: 187 YLD-------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
            ++       + +   G  +DV   H +++ +  +  + +  +     G   +    +++
Sbjct: 535 EVEMPLVGVLERMEREGVQLDVQRLHEVSEKLTNDLRETEDAIFHWA-GHSFNVSSPKQV 593

Query: 240 KTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF E GLH +   T+T    T + VLS      P   ++                  
Sbjct: 594 GVVLFEELGLHAKGKKTKTNTYSTSEEVLSKCVDQHPIVQKIL----------------- 636

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                          + G  +         P    P   R     +Q +T      +SDP
Sbjct: 637 --------------DYRGLKKLIGTYTEALPELVYP-DGRLRTSYNQAVTVTGRLSSSDP 681

Query: 355 DPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +RS  +    +   + AD + IE R++A  + ++  +KAF  GED+
Sbjct: 682 NLQNIPIRSAMGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLIKAFVEGEDV 741

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +T AR +NVAP +VT  QR+  K     + Y   A    +      ++ +  + L+ +
Sbjct: 742 HRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYGISAYGLSQ---RLNIDPSEASSLISS 798

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                             EN+P                             +   + +  
Sbjct: 799 ----------------YFENYP----------------------------AVRAYMDECV 814

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           ++  + G       RR                         Y    N+RS    T RQ  
Sbjct: 815 QKARKLGYTETLLGRRR------------------------YLPDINSRSA---TVRQFA 847

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET--PDTD 640
                        +Q  + D++   M+              +++ VHDE+  +   P+ D
Sbjct: 848 ERNA-----VNAPIQGTAADLIKVAMIRIDAKMRERNMKSRMIMQVHDELNFDAYLPEVD 902

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E  A +++  M         +PL+ E
Sbjct: 903 ELRA-LVHQEMCQAIP-NLRVPLEVE 926


>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 891

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L + ++     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +         ++  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475

Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                      E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLCNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   E+  + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058]
          Length = 880

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 117/667 (17%), Positives = 223/667 (33%), Gaps = 163/667 (24%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85
            ++  A+G D   + +   D +  P+  + L K AL+  D+            VL + + 
Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144
           +++P         LA+          +    +L  Q  +    E+  +  K         
Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYC 198
           R  P   + +       +  +     + ++L        L   EQ L ++   +   G  
Sbjct: 437 RALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIK 496

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256
           V+      +    +     L QE+  L  G   +    ++L T LF + GL LE    T+
Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555

Query: 257 TTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           T     +   ++L P      ++   R   S+     +  L EA+ +DG+          
Sbjct: 556 TGYSTAVDVLERLAPIASIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                 H    Q +T      + DP+   I         +R   
Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643

Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
           +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT 
Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A+  G++       ++T    E +   +N+     
Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM---- 754

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                            E + +  R              + + +TI         +RR +
Sbjct: 755 -----------------ETIVREAR-------------DKGYVETI-------YHRRRSL 777

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
           P +              + R+   R+    R+ +N+                   +Q  +
Sbjct: 778 PDI--------------NSRNFNIRNF-AERTAINSP------------------IQGSA 804

Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAK 659
            DIL   M+N  +A         ++L VHDEIV E P+ +      ++   M +    A 
Sbjct: 805 ADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMEAAIELA- 863

Query: 660 GLPLKAE 666
            +PL A+
Sbjct: 864 -VPLVAD 869


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/567 (16%), Positives = 176/567 (31%), Gaps = 80/567 (14%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           + E    + F    D   + L D +        LK  LE+  V  VA N+ ++  VL   
Sbjct: 415 HCEKADGLAFEAPADIEQIPLADVIA------TLKPLLEDPAVLKVAQNAKYDIAVLARH 468

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
                PI   +    +  +      +  + E       K    K++     KG+      
Sbjct: 469 GIQVAPIEDTMLISYVLEAGLHGHGMDELSELH--LGHKPIPFKQVAGSG-KGQIS---- 521

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIN 193
                    A      Y   D  VT  ++  L+P  ++          E+ +  +   + 
Sbjct: 522 -----FKHVALPEATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMME 576

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
           + G  VD      L+    +   + +   + L  G   +    +++   LF E  +    
Sbjct: 577 NNGVRVDPEALRLLSNEFSLRMAQFEARAQEL-VGRPFNLGSPKQIGDVLFGEMQMKGGK 635

Query: 254 LTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            T T    T   VL S      +  +V  +  + S+        L+ A+           
Sbjct: 636 KTATGQWSTDSDVLESLALEH-ELPRVLLDWRQLSKLKGTYTENLIAAIA---------- 684

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364
                               P   R H       T      +SDP+   I         +
Sbjct: 685 --------------------PSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKI 724

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A+ G  L+ AD + IE R+LA +       KAF+ G D++  T +  F+     +
Sbjct: 725 RKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGM 784

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   K +   + Y   A     +A+  G++       +KT    E +   + +   
Sbjct: 785 DPMIRRRAKAINFGIVYGISAF---GLANQLGISQGEAGAYIKT--YFERFPGIQAYMDA 839

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
            +    EH       G      K       ++ +       +A       G A    +R 
Sbjct: 840 TKAFVREHGYVTTIFGR-----KINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRA 894

Query: 545 DVPLVYMKKDKN-NLILMLPSGRSLVY 570
            + +    +    +  ++L     LV+
Sbjct: 895 MIRMPVALEAAGLSTRMLLQVHDELVF 921


>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
 gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
          Length = 891

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 99/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L +  +     ++   R ++   +N  I +      L++A     P+       
Sbjct: 370 DAFKEWLADGAMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +          +  E+    V V       
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                +  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLEKLMDRHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 KGLVDAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T  +R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLKR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPQEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 106/655 (16%), Positives = 201/655 (30%), Gaps = 152/655 (23%)

Query: 32  LFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
           + AF + +          D + +   P+   +  +N             R +L    N++
Sbjct: 344 IVAFAWGNSEKIYVSKNLDLLTEMKFPENTYDFKKN-------------RVLLSH-LNIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +P+       +LA+     +    +    +L         E I  F KG       D   
Sbjct: 390 LPL--VKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI--FGKGTKLALPDDEIL 445

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            +H           K  +       ++   LS  E  L  +   +   G  V       +
Sbjct: 446 FDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEI 505

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLS 264
               + +   L +E+  L  G   +    ++L   LF +  L +   T+T       VL 
Sbjct: 506 GAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLE 564

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
               L+P   ++   R      +                                 G + 
Sbjct: 565 DLAALSPVVAKILEYRQINKEQSTY-----------------------------VKGLIP 595

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379
               +    + H    Q +T      + DP+   I         +R   + S+   L+ +
Sbjct: 596 Q---IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSS 652

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438
           D + IE RVLA ++ ++  + AF+ G D++ +T  R F +     VT + R   K +   
Sbjct: 653 DYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y         +A   G+      + ++T      + +     +   EN    A +  F
Sbjct: 713 VVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDKGF 763

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
           + T                                     ++ +RR +P +         
Sbjct: 764 VET-------------------------------------MSHRRRKIPDI--------- 777

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                + R+   R     R+ +N+                   +Q  + DIL   M+N  
Sbjct: 778 -----NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMINLD 813

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           KA         ++L VHDEI+ + P  +  +   L    M      A  +PLK +
Sbjct: 814 KALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA--VPLKVD 866


>gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 875

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 102/660 (15%), Positives = 207/660 (31%), Gaps = 139/660 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F   +D     +         P+++   LE+       H++      +K  
Sbjct: 327 YLKD-ELLKFGL-YDGEQYVVIPFDKVNEYPELVAW-LEDETTQKWVHDAKKTYIAMKRS 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              DI I   +   +LA     P   ++ V   +    Q     ++ ++ + KG++    
Sbjct: 384 ---DIAIENVVFDTMLASYIIDPSRTIEDVHSVMTHFDQTF--VQDDVSVYGKGKSFHIP 438

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            D     H  +        +  +    E  ++   LS  E  L  +   +   G   D+ 
Sbjct: 439 EDGVLDKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDID 498

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261
               +  ++  E  +L +++     G   +    ++L   LF +  L +   T+T     
Sbjct: 499 TLKEMETVIQTELDQLIEQIHEQA-GEKFNINSPKQLGVILFEKLELPVIKKTKTGYSTA 557

Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +   P    +   R   S+     +  L + +  DG                 
Sbjct: 558 VDVLEKLQNAHPIIDNILTYRTL-SKLQSTYVEGLQKVIWDDG----------------- 599

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EG 373
                         R H   +Q +       + DP+   I         +R    ++ E 
Sbjct: 600 --------------RIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKSTHED 645

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             ++ AD + IE RVLA + G+    +AF   ED++ TT  + FNVA  +VT   R   K
Sbjct: 646 YVILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAK 705

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y        +   + G+        +       ++ +     +   +N  + A
Sbjct: 706 AVNFGIVYGISDYGLSQ---SLGITRKEAQRFID------DYLNHFPGVKDYMDNIVQDA 756

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
            +  ++ T                                       ++RR +P +  + 
Sbjct: 757 KQQGYVETLL-------------------------------------KRRRYIPDITSRN 779

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                     + R          R+ +N+                   +Q  + DI+   
Sbjct: 780 F---------NLRGFA------ERTAMNSP------------------IQGSAADIIKLA 806

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666
           M+   +          ++L VHDE++ E P  +       +  +M         +PL  E
Sbjct: 807 MVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVE 864


>gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14]
 gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14]
          Length = 1014

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/632 (16%), Positives = 189/632 (29%), Gaps = 132/632 (20%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
             +LK  LE+     V  N  F   +L       I +       +++ +      A     
Sbjct: 486  DLLKPLLESGGHLKVGFNVKFTAVLLAQH---GIVMQNNDDVELISYALDAGRGAHDLEA 542

Query: 114  EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             A +          ELI             ++     +        Y      +T  +++
Sbjct: 543  LAQRWLDHTALNYGELIG---------SGRNK-LAFDQVTIDRATTYAAEYAALTLRLWQ 592

Query: 174  RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             L+P    E+           +      +  RG  +D  +   L+        +L+ E++
Sbjct: 593  VLKPRLVAERMNSVYETLERPMIATLARMERRGITIDRQVLSRLSGEFAQTAARLEAEIQ 652

Query: 224  SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             L  G   +    +++   +F + GL     T+T      +       +    F      
Sbjct: 653  KLA-GEPINVGSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDDLAEQGHDFP----- 706

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                 R  L +   S+         P    P+ SR H       
Sbjct: 707  ---------------------RKILDWRQVSKLKSTYTDALPEYVNPQTSRVHTTYALAA 745

Query: 344  THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            T      +++P+   I         +R   IA+ G KLV AD + IE R+LA +A     
Sbjct: 746  TTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVL 805

Query: 399  LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             +AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+  G+ 
Sbjct: 806  KQAFRDGLDIHAMTASEMFGVPVTGMPGEIRRRAKAINFGIIYGISAF---GLANQLGIP 862

Query: 459  LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                   +K     E +     +    ++   EH   +   G                  
Sbjct: 863  REEAGTYIK--KYFERFPGIRAYMDATRDFCREHGYVETLFG------------------ 902

Query: 519  ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                   ++   P +             PS R+   R   N R 
Sbjct: 903  -----------------------RKCHYPDIKSPN---------PSHRAFNERAAINARL 930

Query: 579  YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                            G   + I +A+ R    +  + A K    ++L VHDE++ E PD
Sbjct: 931  ---------------QGTAADIIRRAMVR---MDDALAAKKLSARMLLQVHDELIFEVPD 972

Query: 639  TD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
             +      ++ H+M   P  A    +PL+ + 
Sbjct: 973  DEVAATLPVVQHVMQDAPFPAMLLSVPLQVDA 1004


>gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143]
 gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143]
          Length = 877

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 431 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 490

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    +V   +L QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 491 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 698 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P  +     +L    M    
Sbjct: 798 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKAELAAVKVLVKQTMEEAI 857

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 858 Q--LSVPLIAD 866


>gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
 gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
          Length = 886

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 97/630 (15%), Positives = 192/630 (30%), Gaps = 137/630 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALK 110
           + ++  L ++++    ++ +  R  L   +   I        + LA     P      L 
Sbjct: 365 EPVRAWLADSEIPKRGYDLH--RIDLALHWQ-GIAFAGAAFDVHLAAYLLDPTESNQTLS 421

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +     L+  + +E       F KG  ++         H     L              
Sbjct: 422 GLASKYGLAYLQADE-----DVFGKGAKYKVPDVEKLSEHMARKCLAVSELVPIQEKELA 476

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             + L      E  L  +   +  +G  V+      L +  + +  KL QE+  +  G  
Sbjct: 477 ANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIA-GTE 535

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L   LF++  L +   T+T         +KL P                   
Sbjct: 536 FNLNSPKQLGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPY------------------ 577

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                        +R  LQ+   ++           +      + H    Q I       
Sbjct: 578 ----------HDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTYYRQTIAATGRLS 627

Query: 351 TSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +  P+   I         +R   + SE G  ++ AD + IE RVLA ++ ++   +AF  
Sbjct: 628 SQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVH 687

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
             D++  T    F V   +V  + R   K +   + Y        +      +     A 
Sbjct: 688 DMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAAA 744

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +       ++ +     R   +   + A +D ++                         
Sbjct: 745 FID------QYFEVFQGVRRYMDVIVKQAKQDGYV------------------------- 773

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTT 583
                      K ++ R+R                  LP   +  +       R+ +NT 
Sbjct: 774 -----------KTLLERRRY-----------------LPEINASNFNLRSFAERTAMNTP 805

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETP 637
                             +Q  + DI+   M++  KA +       ++L VHDE+V E P
Sbjct: 806 ------------------IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVP 847

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + + E    ++  +M+        +PLK+E
Sbjct: 848 EDELEVMKELVPDVMSQALK--LSVPLKSE 875


>gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067]
          Length = 566

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 188/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQ 121
           +D + V +++      +     L   +      ++LA     PS         A++    
Sbjct: 54  SDASKVVYDAKKTMVAMHR---LGYAVSGITFDIMLASYLLNPSDSIADFTSVAIRHDYT 110

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A  +  +    D     E  ++L  +  
Sbjct: 111 EVETDEAVYGKGAKRSTPEESVVAPHLARKAVAIAVLEKRLLDD----LEKNEQLSLMED 166

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 167 LELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 225

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 226 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 270

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 271 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 314

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 315 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 374

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 375 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFV 431

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 432 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 468

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 469 ----------------------------------RNFNVRGF-AERTAMNTP-------- 485

Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M      + + K    ++L VHDE++ E P+ +     
Sbjct: 486 ----------IQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLE 535

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 536 EIVPDVMENAVE--LSVPLKVD 555


>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
 gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
          Length = 1023

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 105/635 (16%), Positives = 197/635 (31%), Gaps = 138/635 (21%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
              L+  LE++ +  +  +  F   +L       I +       +++        +     
Sbjct: 495  DALRPVLESSGILKIGFDVKFTAVMLAQH---GITLRNTDDAQLISYVLDAGRGSHGLES 551

Query: 114  EALKLSSQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A +     M +EG+ L +   K    +   D+  P   E   +     +  V   R + 
Sbjct: 552  LAERWFGHAMLKEGELLGSGKGKITFDQVPIDKAAPLSAEGADMALRVWR--VLKPRLVA 609

Query: 173  KRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            + +  +    E+ L  +   +  RG  +D  +   L+        +++ E++ +  G   
Sbjct: 610  EHMTTVYETLERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQEIA-GEPV 668

Query: 232  SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRASRS 286
            +    +++   LF +  L     T+T    T  +VL    +       ++   R      
Sbjct: 669  NVGSPKQIGDILFGKMSLPGGTKTKTGAWSTTAQVLDELAEQGHDLPKKILEWRQ----- 723

Query: 287  AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                       S+         P    P+  R H       T  
Sbjct: 724  --------------------------VSKLKSTYTDALPEYVNPQTHRVHTTYALAATTT 757

Query: 347  PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                +++P+   I         +R   IA+ G KLV AD + IE R+LA +A      +A
Sbjct: 758  GRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQA 817

Query: 402  FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
            F  G D++  T +  F V    +  + R   K +   + Y   A     +A+  G+    
Sbjct: 818  FRDGLDIHAMTASEMFGVPIKGMPSEIRRRAKAINFGIIYGISAF---GLANQLGIAREE 874

Query: 462  FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
             +  +K     + +E       +M                  +  +   RQ H  V+ L+
Sbjct: 875  ASAYIK-----KYFERFPGIRAYM------------------DETRDFCRQ-HGYVTTLF 910

Query: 522  NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                                       GR   Y D+       N
Sbjct: 911  -------------------------------------------GRKCHYPDIK----ASN 923

Query: 582  TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
             + R          +L     Q  + DI+   M     A         ++L VHDE++ E
Sbjct: 924  ASVRAFNERAAINARL-----QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFE 978

Query: 636  TPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
             PD + E    ++ H+M   P  A    +PL  + 
Sbjct: 979  VPDAEVEATLPVVQHVMQDAPFPAVLLSVPLHVDA 1013


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/534 (15%), Positives = 172/534 (32%), Gaps = 66/534 (12%)

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALK 117
           E+        ++      L+      I +      L+LA         PS    V +   
Sbjct: 362 EDETKKKTVFDAKRTVIALRRH---GIELKGIEFDLLLASYLINPSESPSDFADVAKLHG 418

Query: 118 LSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +  + +E   +  +  K       +Y+ +            E C  DV        +L 
Sbjct: 419 FNEVQSDE--AVYGKGAKLKLPDREIYEEHIARKAVGLTKLAETC-RDVLKE---NDQLS 472

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   +   G  VDV     +   +     ++++E+  L  G   +    
Sbjct: 473 LFYDLEMPLALILADMEWTGVKVDVDRLTEMGDELHNRLQEIEKEIYELA-GQEFNINSP 531

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF + GL +   T+T       VL   +        +   R    +     ++ 
Sbjct: 532 KQLGHILFEKMGLPVIKKTKTGYSTSADVLEKLESSHEIVRYILEYRQL-GKLQSTYIDG 590

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ ++                           QN     + H   +Q +T      ++D
Sbjct: 591 LLKVVH---------------------------QN---THKVHTRFNQALTQTGRLSSAD 620

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   + SE    +  AD + IE RVLA ++G+Q  ++AF    D
Sbjct: 621 PNLQNIPIRLEEGRKIRQAFVPSEKDWVIFSADYSQIELRVLAHISGDQKLIEAFREDMD 680

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T    F+V   +VT + R   K +   + Y        +     G+        ++
Sbjct: 681 IHTKTAMDVFHVQKEEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAGQFIE 737

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                  +    +   +M E   E A    ++ T   R ++   +  SR   + +   + 
Sbjct: 738 -----RYFASYPDVKEYMDEIVRE-AKRKGYVTTLLHR-RRYLPEITSRNFNVRSFAERT 790

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580
              T   G A    K+  + +    K +     ++L     L++    +    +
Sbjct: 791 AMNTPIQGSAADIIKKAMIDMAERLKKEQLKSRMLLQVHDELIFEVPPDEIETM 844


>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
 gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
          Length = 966

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 94/537 (17%), Positives = 167/537 (31%), Gaps = 80/537 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  VA N+ ++  VL        PI   +    +  +              
Sbjct: 441 LKPLLEDPAVLKVAQNAKYDIAVLARHGIQVSPIEDTMLISYVLEA-------------- 486

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKP---NHREAWRLFGEYCKGDVTVTREIFK 173
            L    M+E  EL     K    + +    K        A      Y   D  VT  +++
Sbjct: 487 GLHGHGMDELSELW-LGHKPIPFKQVAGTGKAQISFKHVALSEATAYAAEDADVTLRLYE 545

Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P  ++E          + +  +   + + G  VD      L+    +   + +    
Sbjct: 546 TLKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALRRLSNEFSLRMAEFEARAT 605

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++   LF E  +     T T    T   VL S      +  +V  +
Sbjct: 606 EL-VGRPFNLGSPKQIGDVLFGEMQIKGGKKTATGQWSTDSDVLESLALEH-ELPRVLLD 663

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             + S+        LV A+                                R  R H   
Sbjct: 664 WRQLSKLKGTYTENLVAAIAE------------------------------RTGRVHTSY 693

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
               T      +SDP+   I         +R   IA +GK L+ AD + IE R+LA +  
Sbjct: 694 ALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFIAPQGKVLISADYSQIELRLLAHIGD 753

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF+ G D++  T +  F+     +    R   K +   + Y   A     +A+ 
Sbjct: 754 IPQLKRAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAF---GLANQ 810

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        +KT    E +   + +    +    EH       G      K    +  
Sbjct: 811 LGIPQGEAGAYIKT--YFERFPGIQAYMDATKAFVREHGYVTTIFGR-----KINIPEIQ 863

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVY 570
           ++         +A       G A    +R  + +    +    +  ++L     LV+
Sbjct: 864 AKSVGQRQFAERAAINAPIQGAAADVMRRAMIRMPEALQAAGLSARMLLQVHDELVF 920


>gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58]
 gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58]
          Length = 878

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 105/580 (18%), Positives = 197/580 (33%), Gaps = 70/580 (12%)

Query: 38  DDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           D + V   +       + ++L +     D++   +N   +   L+   N  I I+   C 
Sbjct: 344 DGNRVVYVELKQRPEELLEILCKFFSREDLSFYGYNIKRDLHALR---NAGIVIYNVSCD 400

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWR 155
           L LA        L   G      S  +  G   + AR+ K   H  L     P + E + 
Sbjct: 401 LALAEH------LIHGGARTSFQSLLVSHGWAAVAARYVKEWGHHALPLVQLPENPEKY- 453

Query: 156 LFGEYCKGDVTVTREIFKRLEP--LSSK----EQELWYLDQTINDRGYCVDVALAHTLNQ 209
            FGE       +   + + L+   L+      E  L ++  ++   G  +D     +L  
Sbjct: 454 -FGELVALLPQIKESLLEELQKKQLTDVFFNLEMPLEHVLFSMERNGMPLDSKKLVSLEH 512

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
            ++ +   L +E+ +L  G   + +  ++L   L+ + G+   D  ++T   VL + ++ 
Sbjct: 513 SLEQDLAILTEEIYTLA-GEPFNIKSPKQLANILYNKLGITPLDKAKSTRAEVLEALREE 571

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                ++                                 F    +         P Q  
Sbjct: 572 HKIIEKLL-------------------------------MFRALEKLLSTYVKALPRQVA 600

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR------SCVIASEGKKLVVADLAG 383
           P+  R H   +Q+ T        DP+   I     R      + ++  E    + AD + 
Sbjct: 601 PQTQRIHATFEQMGTATGRLACRDPNLQNIPKRSSRGLSLREAFLVPCETVSFLAADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA ++ ++  L AF  GED++  T ++ F+V   QVTK QR   K +   + Y  
Sbjct: 661 IELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKTVNFGIIYGQ 720

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A     ++    + L+    L++     E +     F                 +G   
Sbjct: 721 QAY---GLSKILKIPLSEAQELIQA--YFERYSGVARFVEETIAAASHDLKVTTMLGR-- 773

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILML 562
           ERV   W + H  +      L      T   G A    K   + +    +D+     ++L
Sbjct: 774 ERVIDNWDE-HPGIRASSGRL---AVNTRIQGSAAELIKCAMLEISKEIQDRKLQSRMLL 829

Query: 563 PSGRSLVYRDVGNNRSYLNTTTR-QLTREYTYGGKLTENI 601
                L++         +    + ++    T    L  NI
Sbjct: 830 QIHDELIFEVPDGEMQEMCALVQEKMEAAMTLTVPLVVNI 869



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 21/84 (25%)

Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-----EFNAS 645
                +Q  + +++   M+         K    ++L +HDE++ E PD +          
Sbjct: 794 AVNTRIQGSAAELIKCAMLEISKEIQDRKLQSRMLLQIHDELIFEVPDGEMQEMCALVQE 853

Query: 646 MLYHLMTSNPS----------WAK 659
            +   MT              WA+
Sbjct: 854 KMEAAMTLTVPLVVNILIGKNWAE 877


>gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
          Length = 964

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/528 (17%), Positives = 159/528 (30%), Gaps = 79/528 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+  V  V  N  ++  V+        PI   +              L+      
Sbjct: 439 LKDLLEDPSVLKVGQNIKYDLAVMARRGVRVAPIDDVMLISY---------VLEG----- 484

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA---WRLFGEYCKGDVTVTREIFK 173
            L    M+E   L     +    + +    K          +    Y   D  VT  + +
Sbjct: 485 GLHGHGMDELARL-HLGHEPIPFKSVAGTGKSQKSFKHVELKSAVCYAAEDADVTLRLHR 543

Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P  + E          + +  +   +   G  VD     +L+        +L++E  
Sbjct: 544 LLKPRLAAEGLSNVYETLERGMPAVLADMERAGVRVDPDRLRSLSSTFGQRMAELEEEAH 603

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +     ++   LF E  L     T +    T   VL    +  P    + + 
Sbjct: 604 KLA-GRPFNVGSPRQIGEILFGEMNLPGGKKTASGQWGTDASVLEDLAQSHPLPRTILDW 662

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 S+              P+ +R H   
Sbjct: 663 RQL-------------------------------SKLKGTYTDALVAAMDPQTNRVHTSY 691

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                      +SDP+   I         +R   IAS G  L+ AD + IE R+LA +  
Sbjct: 692 QLAAATTGRLASSDPNLQNIPIRTETGRQIRQAFIASPGHVLISADYSQIELRLLAHIGD 751

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF++G D++  T +  F V    +  + R   K +   + Y   A     +A+ 
Sbjct: 752 IPELKRAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIIYGISAF---GLAAQ 808

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +KT    E +    ++    +    E      F+ T   R +      H
Sbjct: 809 LGIDQGEAGAYIKT--YFERFPGIRDYMDRTKALVKEQG----FVTTVFGR-RIHIPAIH 861

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
           S+         +A       G A    +R  + +     +      ML
Sbjct: 862 SKSGAERQFGERAAINAPIQGAAADIIRRAMIRMPGALAEAGLQTRML 909


>gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 889

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 443 GVKKAIPEREKFLEHLARKVAVLVETEPVLIEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 502

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    +V   +L QE+  L      +    ++L   LF + GL LE   
Sbjct: 503 GIKVKKETLLEMQAENEVVIEQLTQEIYELAD-EEFNINSPKQLGVLLFEKLGLPLEYTK 561

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   + +L + +  DG++      
Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VVSLQDWILDDGKI------ 614

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +A+  G++       + T               
Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKKAKAYIDTYF------------- 753

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 754 -------------------------------ERFPGIKNYMEEVVREARDKGYVETLFKR 782

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++     +L    M    
Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEAI 869

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 870 Q--LSVPLIAD 878


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 114/679 (16%), Positives = 195/679 (28%), Gaps = 181/679 (26%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV------MPQVLKEALENTDV 66
            +D     +    +     L    F   P E +                 LK  LEN ++
Sbjct: 380 SVDTETTSL----DTFEAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLKPLLENPEI 435

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123
                N  ++  VLK   N  + +       +LA     P +   L  +  AL LS Q +
Sbjct: 436 GKTGQNLKYDILVLK---NYGVELQPVEFDTMLASYVLDPESRHNLDDMA-ALHLSRQTV 491

Query: 124 EE------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIFK 173
           +       GK  I  F                     +   +Y   D  +T     E+  
Sbjct: 492 KYDELVGTGKSAIGIF-----------------EVEPQKLSDYACQDADITLKLRGELAA 534

Query: 174 RLEPLSSK-------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           +LE            E  L  +   +  +G  +D      L   V+ E   L + +    
Sbjct: 535 KLEATPELLEVCRTLEFPLVRVLADMEHQGVSIDTEHLAKLAVKVNEELVGLTERIHE-A 593

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF    L  +  T+T      +VL     L P A +V   R   
Sbjct: 594 AGETFNIDSPKQLGHILFDVLKLPTKKATKTGYSTNVQVLEELALLNPIAAEVLEYRSL- 652

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                          +         P        R H   +Q I
Sbjct: 653 ------------------------------QKLKGTYIEALPKLLHAATGRLHTSFNQSI 682

Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397
           T      +S+P+   I     +   +R   I S  +  L+ AD + IE RV A ++G+  
Sbjct: 683 TATGRLSSSNPNLQNIPIRTDLGKEIRRAFIPSNPENLLLSADYSQIELRVAAELSGDPM 742

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF   ED++  T    F+    +VT D R   K +   + Y        +     G+
Sbjct: 743 LIEAFRNHEDIHAATARVIFDT--DEVTSDMRRKAKEVNFGVLYGIQPFGLSQ---RLGI 797

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                                           +   +  K+   
Sbjct: 798 PQKEAKE-----------------------------------------IIDTYMAKYP-- 814

Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             +++ L    E+  + G    +  +RR VP +                           
Sbjct: 815 -GMFSALQTTVEEARKLGYVTTLMGRRRYVPDLNSP------------------------ 849

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHD 630
               N   R+     T         +Q  + DI+   M      +   +    ++L VHD
Sbjct: 850 ----NGNIRKAAERVT-----MNTPIQGTAADIIKYAMCTISRRLKEERLNSVMLLQVHD 900

Query: 631 EIVCETPDTDEFNASMLYH 649
           E++ ETP  ++   + L  
Sbjct: 901 ELLFETPADEQSRLTELVE 919


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 111/639 (17%), Positives = 201/639 (31%), Gaps = 160/639 (25%)

Query: 57  LKEALENTDVTIVAHNSYFER--TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            KE L NT + +      F+R   +L     L I + +      LA+          +  
Sbjct: 363 FKEFLGNTALKVY----DFKRSKVLLSR---LGIELSQPSFDSRLAKYLLSTVDNNEIAT 415

Query: 115 ALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----- 168
              L    ++ E + +  +  K         R  P                V        
Sbjct: 416 IANLYGKTRLVEDEVVYGKGAK---------RALPEKAILLSHLARKVTVLVETEKPMTD 466

Query: 169 -REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                 +L  L   EQ L ++   +   G  V+     T+    +    +L QE+  L  
Sbjct: 467 LLRQHDQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQTENEEVLARLTQEIYDLA- 525

Query: 228 GLVSSSRCLEKLKTWLFLETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282
           G   +    ++L   LF + GL       T+T       VL     + P   ++ + R  
Sbjct: 526 GEEFNINSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQI 585

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +   +  L + + +DG++                               H    Q 
Sbjct: 586 AKIQSTY-VMGLQDWILADGKI-------------------------------HTRYLQD 613

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396
           +T      + DP+   I         +R   +   +   L+ +D + IE RVLA ++G++
Sbjct: 614 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDE 673

Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             ++AF  G D++ +T  R F +  P  VT + R   K +   + Y         +A+  
Sbjct: 674 HLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGVVYGISDF---GLANNL 730

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       + T                                               
Sbjct: 731 GISRKEAKSYIDTYF--------------------------------------------E 746

Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           R   + N +     +  + G    +  +RR++P +              + R+   R   
Sbjct: 747 RYPGIKNYMENVVREARDKGYVETLFHRRREIPDI--------------NSRNFNVRGF- 791

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628
             R+ +N+                   +Q  + DIL   M+   +A  D      ++L V
Sbjct: 792 AERTAINSP------------------IQGSAADILKIAMIRLDQALTDGNFKTRMLLQV 833

Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
           HDEIV E P+ +      L   +M S       +PLKA+
Sbjct: 834 HDEIVLEVPENELTAIKTLVKDIMESAIELV--VPLKAD 870


>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 891

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/632 (15%), Positives = 202/632 (31%), Gaps = 153/632 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L N ++     ++   R ++   +N  I +      L++A     P+           + 
Sbjct: 376 LANGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR----TV 428

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175
            KM+E   +       ++ E +Y +          +  E+    V V  ++ +       
Sbjct: 429 AKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFVEELK 481

Query: 176 -----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                E  +  E  L  +   +  +G  VD      + + +     +++QE+  L  G  
Sbjct: 482 KNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEIYKLA-GTE 540

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF    L +   T+T       VL            + + R    +  
Sbjct: 541 FNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQL-GKLN 599

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ ++ D                               S+ H   +Q++T   
Sbjct: 600 STYIEGLLKVVHED------------------------------SSKIHTRFNQVLTQTG 629

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              ++DP+   I         +R   + SE G  +  AD + IE RVLA +A ++  ++A
Sbjct: 630 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+   D++  T    F V   +VT + R   K +   + Y        +     G+    
Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKA 746

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +      E++ ++    +   E+  + A +  ++ T   R     R+    ++   
Sbjct: 747 AAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIPEITS-- 793

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                                       R+   R     R+ +N
Sbjct: 794 --------------------------------------------RNFNLRSF-AERTAMN 808

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCE 635
           T                   +Q  + DI+ + M+       + G    ++L VHDE++ E
Sbjct: 809 TP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFE 850

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
            P  +      L   +M      A  +PLK +
Sbjct: 851 APKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880


>gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 875

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 188/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQ 121
           +D + V +++      +     L   +      ++LA     PS         A++    
Sbjct: 363 SDASKVVYDAKKTMVAMHR---LGYAVSGITFDIMLASYLLNPSDSIADFTSVAIRHDYT 419

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A  +  +    D     E  ++L  +  
Sbjct: 420 EVETDEAVYGKGAKRSTPEERVVAPHLARKAVAIAVLEKRLLDD----LEKNEQLALMED 475

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 476 LELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFV 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794

Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M      + + K    ++L VHDE++ E P+ +     
Sbjct: 795 ----------IQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 147/432 (34%), Gaps = 64/432 (14%)

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHT 206
            E       ++  + + L      E++L +L              +   G  +DVA    
Sbjct: 401 TEDAAHRALLSERLHQNLLKRLQGEEKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQA 460

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261
           L+  +  E  +L++E+  L  G   +    ++L+  LF E  L     T+ T +R     
Sbjct: 461 LSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDELRLPALGKTQKTGKRSTSAA 519

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL + ++  P   ++  +R                                 ++      
Sbjct: 520 VLEALREAHPIVEKILQHREL-------------------------------TKLKNTYV 548

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376
              P    PR  R H   +Q  T      +SDP+   I     +   +R   +A  G  L
Sbjct: 549 DPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWAL 608

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V  D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R   K + 
Sbjct: 609 VALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVN 668

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A    +++    +     +  +      E +  +    R   E   E   + 
Sbjct: 669 FGVLYGMSA---HRLSQELSIPYEEASAFI------ERYFQSFPKVRAWIEKTLEEGRKR 719

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R ++     ++RV  +     +        G A    K   V L    +   
Sbjct: 720 GYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRQMG 778

Query: 557 NLILMLPSGRSL 568
              ++L     L
Sbjct: 779 A-RMLLQVHDEL 789



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604
                K +  +   L  GR   Y +   G  R   +   R +  RE           VQ 
Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            + D++   M        + G  ++L VHDE++ E P       + L    M      A 
Sbjct: 758 TAADLMKLAMVKLFPRLRQMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816

Query: 660 GLPLKAEG 667
            +PL+ E 
Sbjct: 817 -VPLEVEA 823


>gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 887

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 85/513 (16%), Positives = 167/513 (32%), Gaps = 129/513 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
              +++++      E  L  +  ++   G+ +D      L+   +     L +++     
Sbjct: 481 MTALYQKI------ELPLIPVLASMESIGFKIDQEQLKNLSAHFEARIETLTRQIYEEA- 533

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    ++L   LF E GL     T+T     +   ++L P                
Sbjct: 534 GQRFNINSTKQLGMILFEEMGLPPIKKTKTGYSTSVEVLEQLRP---------------- 577

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
               NT+V+ +         L++   ++     G        P   + +   +Q +T   
Sbjct: 578 ---YNTIVDDI---------LEYRTVTKLDSTYGRGLIKLVDPETEKIYSHFNQTVTATG 625

Query: 348 TSITSDPDPLQI-----ISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +SDP+   I     +   +R   + S     LV AD + IE RVLA +  ++  L+A
Sbjct: 626 RISSSDPNLQNIPVRTDLGREIRRVFVPSSPMCVLVDADYSQIELRVLAHLTQDENLLEA 685

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   +D++  T +  F V    VT++QR+  K +   L Y   A +        G+  N 
Sbjct: 686 FAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIYGKQAFSL---GKELGIGRNQ 742

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +        +     + + ++E                                  
Sbjct: 743 AQDYIDM--YFSRYPKVYAYMKAIREEAKTKGYV-------------------------- 774

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                            +  +RR +P +  +       +++ SG           R  LN
Sbjct: 775 ---------------TTLYGRRRYIPEIQSRNR-----MIVQSG----------ERMALN 804

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635
           T                   +Q  + DI+   M+              ++L +HDE++ E
Sbjct: 805 TP------------------IQGSAADIMKIAMVKVYHRLAKESFRSHLLLQIHDELIIE 846

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
            P+T+ E    +L   M +  S    +PL  + 
Sbjct: 847 APETESEKILRLLTEEMENAVS--LSVPLVVDA 877


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/645 (15%), Positives = 197/645 (30%), Gaps = 133/645 (20%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
              +  +P+ LK  LE+  V  +  N  ++  +++   ++ +  +    T+++A +    
Sbjct: 464 LPMESALPR-LKALLEDDSVLKIGQNIKYDALIMRRHGDIRVAPYD--DTMLMAYACDQG 520

Query: 107 -SALKAVGEALKLSSQKMEE----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
              L   G   +LS + +        ++  +     T +C+          A     EY 
Sbjct: 521 RGGLAGFGMD-ELSKRHLGHTPIAFTDVAGKGKAQSTFDCI----------AVDKATEYA 569

Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  ++       + E          + +  +   +   G  VD  +   L+   
Sbjct: 570 AEDADVTLRLWHLFRARIAAEGMAAVYATLERPMPAVLGQMEFNGIEVDRTVLSRLSGDF 629

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLT 270
                +L+ E+  L  G   +    +++   LF + GL     T T          + L 
Sbjct: 630 AQSLARLEDEIYELA-GQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAKVLEDLV 688

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                  + R   ++                      L++   ++         P     
Sbjct: 689 SSEDLTEDQRRLPAKL---------------------LEWRQLAKLKSTYTDSLPQHIDA 727

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
              R H       T      +++P+   I         +RS  IA+ GKKL+ AD + IE
Sbjct: 728 DTGRIHTCYSLASTSTGRLSSTEPNLQNIPIRTREGRMIRSAFIAAPGKKLISADYSQIE 787

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA MA       AF  G D++  T +  F V    +  + R   K +          
Sbjct: 788 LRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAIN--------- 838

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++    +  +         ++A ++     E  P               
Sbjct: 839 -----FGIIYGISAFGLSQQLGIPR-----QEAGDYIAKYFERFP--------------- 873

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                         +   +     +  E+G                             G
Sbjct: 874 -------------GIRAYMDAMRSKVHEDGHVETLF-----------------------G 897

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
           R + + ++   +  +     +        G   + I +A+ R       +        ++
Sbjct: 898 RKIHFPEIKTPKWNMRQFFERAAINAPIQGTAADIIRRAMVR---VPAALEQAGVRARML 954

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667
           L VHDE+V E  D++ E     +  +M     P+ A  +PLK + 
Sbjct: 955 LQVHDELVFEADDSEVEATIKAVTRVMERAAEPAVAFSVPLKVDA 999


>gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
 gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
          Length = 1020

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 101/632 (15%), Positives = 190/632 (30%), Gaps = 132/632 (20%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
            ++LK  LE+     +  N  F   +L       I +       +++ +      +     
Sbjct: 492  ELLKPILESGGHLKIGLNIKFSAVLLAQH---GIVMQNHDDVELISYTLDAGRGSHDLAS 548

Query: 114  EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             A +          EL              +R     + A      Y      +T  +++
Sbjct: 549  LAKRWLGHTTLSHGELTG---------SGRNR-LAVDQVAIDRATAYAAEYADMTLRLWQ 598

Query: 174  RLEPLSSKEQELWYLD----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             L+P    E+     +            +  RG  +D  +   L+  +     +L+ E++
Sbjct: 599  VLKPRLVAERMNAVYETLERPMTATLARMERRGITIDRQVLSRLSGELAQTAARLEAEIQ 658

Query: 224  SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             L  G   +    +++   +F + GL     T+T      +       +    F      
Sbjct: 659  QLA-GEPINVGSPKQIGDIMFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHDFP----- 712

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                 R  L +   S+         P    P+  R H       
Sbjct: 713  ---------------------RKILDWRQVSKLKSTYTDALPEYVNPQTRRVHTTYALAA 751

Query: 344  THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            T      +++P+   I         +R   IA+ G +LV AD + IE R+LA +A     
Sbjct: 752  TTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVL 811

Query: 399  LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             +AF  G D++  T +  F V    +  + R   K +   + Y   A     +A+  G+ 
Sbjct: 812  KQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAF---GLANQLGIP 868

Query: 459  LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                A  +K     E +     +    ++   EH                          
Sbjct: 869  REEAAAYIK--KYFERFPGIRAYMDATRDFCREHGYV----------------------- 903

Query: 519  ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                +  ++   P +             PS R+   R   N R 
Sbjct: 904  ------------------TTLFGRKCHYPDIKAPN---------PSHRAFNERAAINARL 936

Query: 579  YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                            G   + I +A+ R    +  + A K    ++L VHDE++ E PD
Sbjct: 937  ---------------QGSAADIIRRAMVR---MDDALAAKKLSARMLLQVHDELIFEVPD 978

Query: 639  TD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
             +      ++ H+M   P  A    +PL+ + 
Sbjct: 979  EEVAATLPVVQHVMQDAPFPAVLLSVPLQVDA 1010


>gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909]
          Length = 876

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 201/664 (30%), Gaps = 147/664 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F  +     +     D    + L + LE+ + T + +++  +  V    
Sbjct: 328 YLKDA-ILKFGFYTNHQ--HVVINADDVKDYKNLVQWLEDKNTTKIVYDAK-KTYVSAHR 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             ++I        ++LA     P  ++  V   + L  Q     K+ I  F KG+ H   
Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITVFGKGKKHHIP 439

Query: 143 YDRNKPNHREAWRLFGEYCKGDVT----VTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
            +     H              VT       E + ++E L   E  L  +   + + G  
Sbjct: 440 EESILNEH----IASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            D+     +   +  +   L   +   + G   +    ++L   LF    L +   T+T 
Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554

Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 VL   +   P    +   R                                 S+
Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQL-------------------------------SK 583

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                        + +  R H   +Q +       + DP+   I         +R     
Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKP 642

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            S+   ++ AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R
Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y        +   + G+        +       ++  +    +    + 
Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKKAKAFID------DYLASFPGVKQYMSDI 753

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A    ++ T                                        +RR +P +
Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
             +           + RS         R+ +NT                   +Q  + DI
Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662
           +   M+        TK    ++L VHDE++ E P ++ E  +  +  +M         +P
Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861

Query: 663 LKAE 666
           LK +
Sbjct: 862 LKVD 865


>gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium pseudotuberculosis I19]
          Length = 886

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 107/643 (16%), Positives = 188/643 (29%), Gaps = 141/643 (21%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           V   D        +        ++     H +     +L         ++       +A 
Sbjct: 355 VIAVDLSDIDPQDEKALAQWLRSETPKYLHEAKATFHMLS---GRGFELNGVAHDTAIAA 411

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-- 159
               P          +    K    + L  +    ET   L   + P+  E         
Sbjct: 412 YLLRPG--------QRTYDLKDVYQRHLQRQLSGDETQGQLSLLDAPDSEELIDSVIAIL 463

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
               ++T   E     E     E  L  +   +   G  VDV       ++      + +
Sbjct: 464 ELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQLKVFIERVQEHE 523

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
               ++      +    ++L+  LF   GL     T+T         + L  +    F +
Sbjct: 524 AAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTAAKEIEALAVKHPDPFLD 583

Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + A R        L  L++A+ SDGR+  T                             
Sbjct: 584 HLLAHRENQKLKTTLEGLIKAVGSDGRIHTT----------------------------- 614

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLA 390
              +Q +       +++P+   I         +RS  +  EG   L+ AD + IE RV+A
Sbjct: 615 --FNQTVASTGRLSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMA 672

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++A+  GEDL+    +R F V   QVT + R   K M   L Y   A     
Sbjct: 673 HLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAF---G 729

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +     +                                                 K+  
Sbjct: 730 LGQQLNIPAGEA--------------------------------------------KQIM 745

Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                R   +   L    EQ  ++G  + +  +RR +P              L S   + 
Sbjct: 746 TSYFERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLP-------------ELGSDNRVA 792

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG--YD 623
             +    R+ LN                    +Q  + DI+   M+       KAG    
Sbjct: 793 RENA--ERAALNAP------------------IQGTAADIIKVAMIRVDQELKKAGVVSR 832

Query: 624 IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           ++L VHDE+V E  P+  E    ++   M +  S    L + A
Sbjct: 833 VLLQVHDELVVEIAPNELEQVREIVEKEMDAAISLRVPLEVSA 875


>gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814]
 gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814]
          Length = 956

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/563 (16%), Positives = 169/563 (30%), Gaps = 77/563 (13%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP-SALK 110
           +LK  LE+  +  V  N  ++  V         +  I  +    T++L+ +         
Sbjct: 423 ILKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAALEAGQHNHG 482

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               +      K    KE+     K  T + +                +Y   D  VT  
Sbjct: 483 MDVLSELHFDHKPIPFKEVAGTGKKQITFDKVPVP----------EATKYAAEDADVTLR 532

Query: 171 IFKRLEPLSSKE--QELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           ++  L+P  S E    L+         +   +   G  V+      L+        + + 
Sbjct: 533 LWALLKPRLSAEGMATLYETIERPMVPVVAQMERAGIFVERETLSRLSGDFAQRMAQYEA 592

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           E   L  G   +    ++L   LF E  L     T+T    T    L        +  ++
Sbjct: 593 EAYELA-GREFNMGSPKQLGEILFGEMELPGGKKTKTGAWATGADALEDLAAEGHELPKI 651

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                  S+      + L E +N++                                R H
Sbjct: 652 LLGWRSLSKLKSTYTDALGECINAE------------------------------TGRVH 681

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
              + +        +SDP+   I         +R+  +A EG  L+ AD + IE R+LA 
Sbjct: 682 TSFNLVGAQTGRLSSSDPNLQNIPIRTEEGRKIRAAFVAQEGNVLIAADYSQIELRLLAH 741

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +        AF    D++  T +  F V    +    R   K +   + Y   A     +
Sbjct: 742 IGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAINFGIIYGISAF---GL 798

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   G+     +  +K  +A           ++M E     A E  ++ TA  R  + W 
Sbjct: 799 ARQLGIPRGEASEYIKAYNA-----KFPGILKYMDE-MKAFAREKGYVETAFGR--RIWM 850

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570
           +  +          +        G A    KR  V +    +       ++L     L++
Sbjct: 851 KGINGKGPERGFAERQAINAPLQGSAADIIKRAMVKMPAALEKSGLQAKMLLQVHDELIF 910

Query: 571 RDVGNNRSYLNTTTRQLTREYTY 593
                         +++    T+
Sbjct: 911 EAPKAEAEKTIKLVKKIMETATF 933


>gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 875

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/623 (14%), Positives = 186/623 (29%), Gaps = 135/623 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           LE+  V     N    RT++   +     I      +++A     P+ A   +    KL 
Sbjct: 360 LEDGRVKKTVFNGK--RTIVSLKWA-GHEIKGIEHDVMIASYILNPAEANDDLATIAKLK 416

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                +  E +  + KG             H         Y K  +       ++ E   
Sbjct: 417 GYHQVQSDEAV--YGKGAKRSIAEAAQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFE 474

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +  +G  +D A    + + +  +  K++ ++     G   +    ++L
Sbjct: 475 KLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYA-GQEFNINSPKQL 533

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL           ++   R    +     +  L +
Sbjct: 534 GVVLFEKMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQL-GKLQSTYIEGLKK 592

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++                                  + H   +Q +T      + DP+ 
Sbjct: 593 VIHESD------------------------------GKVHTRFNQTLTQTGRLSSVDPNL 622

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   + S     +  AD + IE RVLA +A ++  + AF+   D++ 
Sbjct: 623 QNIPIRLEEGKKIRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHT 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+V   +VT + R   K +   + Y        +   + G+     A  +    
Sbjct: 683 KTAMDVFHVEREEVTSNMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKAAATFI---- 735

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E +  +    +   +     A E  ++ T   R     R+    ++            
Sbjct: 736 --ERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHR-----RRYLPEITS----------- 777

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                                              R+   R     R+ +NT        
Sbjct: 778 -----------------------------------RNFNLRSF-AERTAMNTP------- 794

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+ + M+   K          ++L VHDE++ E P+ +    
Sbjct: 795 -----------IQGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKIL 843

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666
             +   +M +       +PLK +
Sbjct: 844 EKIVPEVMENALE--LEVPLKVD 864


>gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 504

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/482 (15%), Positives = 152/482 (31%), Gaps = 66/482 (13%)

Query: 120 SQKMEEGKELIARFCKGETHE--CLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLE 176
              M+   E+   +      E      +N+ N R+   +    Y   D  +T ++   LE
Sbjct: 30  RHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVLE 89

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               +          E  L  +   I   G  +D       +     +  ++++E+  L 
Sbjct: 90  KELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA 149

Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            G   +    +++   LF +   +     T+T    T + VL S +   P   ++  +R 
Sbjct: 150 -GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR- 207

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                         G  +         P    PR  R H   +Q
Sbjct: 208 ------------------------------GLKKLLGTYIDALPLLINPRTGRVHTSFNQ 237

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +S+P+   I         +R   I  EG     AD + IE R++A ++ ++
Sbjct: 238 TVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDK 297

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF +  D++  T A+ + +    V  D R   K     + Y         +A    
Sbjct: 298 NMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAERMN 354

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++      L+        + +     +   +   + A E  ++ T   R K+     +SR
Sbjct: 355 VDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDINSR 407

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGN 575
            + +     +        G A    K     +    + +     ++L     L +    N
Sbjct: 408 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVN 467

Query: 576 NR 577
            +
Sbjct: 468 EK 469


>gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23]
 gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23]
          Length = 888

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/631 (16%), Positives = 204/631 (32%), Gaps = 141/631 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAV 112
           LK+ L++  V     N+  +   L     L IP+      L+LA          + L  V
Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR---LGIPLENINFDLLLASYLLNTNDNSNDLGQV 422

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +       + +E  E+  +  K    +   D    +H        E  + D+    +  
Sbjct: 423 AQEHGYDDVRTDE--EVYGKGAKRTVPD--DDETFFSHLATKARAIEQLRKDLFAKLDEN 478

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           K+    +  E  L  +   +   G  VD      +   +    ++++ ++     G   +
Sbjct: 479 KQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEA-GEEFN 537

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T       VL      +P   Q+   R  A   +  
Sbjct: 538 INSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQIAKLQSTY 597

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ ++S+                                + H    Q +T     
Sbjct: 598 -IAGLLKVIHSND------------------------------QKIHTRYLQTLTQTGRL 626

Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R   + S EG ++  +D + +E RVLA + G++   + F+
Sbjct: 627 SSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFK 686

Query: 404 TGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            GED++ +T  R F++AP  ++ ++ R   K +   + Y         +A    ++    
Sbjct: 687 NGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDY---GLAQRIHVSRAEA 743

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              ++  +   E+   + +         E+   +                          
Sbjct: 744 HEFIQ--NYFHEFPGVKKYINDTIAFAKENGYVE-------------------------- 775

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                           I  +RR +P ++ K           S RS         R+ +NT
Sbjct: 776 ---------------TITHRRRYLPDIHAKSF---------SKRSFA------ERTAMNT 805

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636
                              +Q  + DI+   M+              ++L +HDE+V E 
Sbjct: 806 P------------------IQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEA 847

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           P  +    S L   +M S       +PLK +
Sbjct: 848 PKEEIPVLSELVPKVMDSAVK--LDVPLKVD 876


>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297]
 gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
          Length = 933

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/622 (14%), Positives = 181/622 (29%), Gaps = 148/622 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI-CTLVLARSNGLPSALKAVGE 114
           L    E+  +    +    +       FN L+I   R +    V+A             +
Sbjct: 398 LIPLFEDHAIVKTGY----DIKADYHWFNALNISPSRLLNDVQVMAFVYDSTLKRD---K 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLY-----DRNKPNHREAWRLFGEYCKGDVTVTR 169
           +L      +     +I    K       Y      R            G++         
Sbjct: 451 SLSAHFSHLSIDNLVIQYLQKSPKTVEDYLGKAGKRQLSPSAVKADDIGQWWAERADFVL 510

Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            + + LE               E+ L      I + G  +DV   H L+     +   ++
Sbjct: 511 RLGQWLEQGLASRQLSRVYQEIERPLSKTLAAIEENGVKLDVEFVHELSTRFKRDLEDIE 570

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275
           ++   L  G+  +    ++L   LF   GL ++  T     +T + VL+           
Sbjct: 571 RQAHDLA-GVEFNLDSPKQLADVLFERMGLPVKSKTASGAPSTNEEVLTELAAEHELPRL 629

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R                 ++ DG                               R 
Sbjct: 630 ILQSRRLRKLVGTYTDPLPTMTIDHDG-----------------------------DQRL 660

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H   +Q         ++DP+   I         +R   +A +G ++V AD + IE R++ 
Sbjct: 661 HTTYNQTGAQTGRLNSNDPNLQNIPVRSEEGRSIRKAFVAPQGYRIVAADYSQIELRIMT 720

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++AF  G+D++  T A    +   QV+ +QR   K +   L Y   A     
Sbjct: 721 HLSQDANLIQAFREGKDIHRATAAEVMGIEEEQVSAEQRRSAKAINFGLIYGMSAF---G 777

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A   G++                   A+ +     E +P               V++  
Sbjct: 778 LARQLGISRTE----------------AKTYVDAYFERYP--------------GVRRYM 807

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +  +            + +T+                                GR L  
Sbjct: 808 DETRAE------AAESGYVETVF-------------------------------GRRLYL 830

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDI 624
             +         ++ Q+ R+           +Q  + DI+   M++             +
Sbjct: 831 PGI--------QSSNQIARKAAER-TAINAPMQGTAADIIKMAMVDVDNWLSNSSLRARM 881

Query: 625 VLTVHDEIVCETPDTDEFNASM 646
           ++ VHDE+V E  + D    + 
Sbjct: 882 IMQVHDELVFEVHEDDVAALTE 903


>gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537]
          Length = 896

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 112/629 (17%), Positives = 204/629 (32%), Gaps = 136/629 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKA 111
            +K  +E+  V    +N   +R + K    LDI +       +LA          + L  
Sbjct: 375 EIKAIIESPTVEKRVYNVKAQRVLFKR---LDIELRNATFDFLLAAYLLDTTDNNAELAT 431

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +   +  Q  E+     A+F    T E     +  +  +      E     V V  + 
Sbjct: 432 LAQKYDIYLQLDEDIYGKGAKFSVP-TDEGRVLMHIAHKADTLNQLIEP----VMVQLKE 486

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++L      E  L  +   +   G  VD      + + +D +   +++ +     G   
Sbjct: 487 HEQLALYQDIELPLASVLADMEYTGIRVDQNQLQEMGESLDAQIVDVEKAIYEEA-GEEF 545

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L   LF + GL +   T+T     +   +KL  QA  V               
Sbjct: 546 NINSPKQLGILLFEKMGLPVIKRTKTGYSTAVEVLEKLADQAPIVA-------------- 591

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                           LQ+   ++               + S+ H    Q +T      +
Sbjct: 592 --------------YILQYRQLAKLKSTYIDGLLAVVYRQDSKIHTRYLQTLTQTGRLSS 637

Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            DP+   I         +R   + SE   ++  AD + IE RVLA M G++   +AF   
Sbjct: 638 VDPNLQNIPMRTEAGRQIRKAFVPSEPNWQIFGADYSQIELRVLAHMTGDKNLQRAFLND 697

Query: 406 EDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           ED++  T    F +     +T  QR   K +   + Y         +++  G++      
Sbjct: 698 EDIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYGISDF---GLSNNLGISRAEAKR 754

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            + T      +E       WM EN    A E  ++ T                       
Sbjct: 755 FIDT-----YFEKFPQVHEWM-ENAKTLAHEQGYVET----------------------- 785

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                         +A++RR +P ++ K             RS         R+ +NT  
Sbjct: 786 --------------LAKRRRYLPDIHAKNFNR---------RSFA------ERTAMNTP- 815

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPD 638
                            +Q  + DI+   M+   +  +       ++L VHDE++ E P 
Sbjct: 816 -----------------IQGSAADIIKIAMIKMNQVLHEHHLQARMLLQVHDELIFEAPT 858

Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           ++      +   +M S    A  +PLK E
Sbjct: 859 SEIPELEEIVPQVMDSAV--ALDVPLKVE 885


>gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63]
          Length = 854

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 114/689 (16%), Positives = 222/689 (32%), Gaps = 187/689 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+++FET               E+  +  FA  FD    +++    + +      + +
Sbjct: 319 KKLYLNFET---------------ENKELKSFAVLFDG---KVYISTDEELF----VKFI 356

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL----- 116
            ++++     N     T+       +I +   +  + LA     PS+     + L     
Sbjct: 357 ADSELEKYTRNIK---TLYAYADEKNIDVENIVFDIELAAYLIEPSSKDYSDKNLCASYE 413

Query: 117 -KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L     E+ ++  A  C  E  E L D+ K + +E                       
Sbjct: 414 IALPVCTDEQNEKYEAFACYAELCEKLGDKIKAHGQEKL--------------------- 452

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
             LS  E  L  +   + + G CVD     +  +++  +  +L+  +   + G   +   
Sbjct: 453 --LSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIKELETAIYE-SAGCEFNINS 509

Query: 236 LEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF   GL  +  T++       VL S +   P    V   R   S+       
Sbjct: 510 PKQLGVVLFENLGLPCKKKTKSGYSTNAEVLESLRYEHPVVEMVLRYRTL-SKLNSTYCE 568

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L++ +  DG                               R H   +Q  T      ++
Sbjct: 569 GLLKVIADDG-------------------------------RIHSNFNQTETRTGRISST 597

Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I     +   +R    A +G  LV AD + IE RVLA ++G++  +KAF+  ED
Sbjct: 598 EPNLQNIPVRTELGREMRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNED 657

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T ++ FN+    VT   R+  K +                    G+   + A  + 
Sbjct: 658 IHAITASQVFNMPLDMVTPIMRSRAKAVN--------------FGIVYGIGAFSLAKDI- 702

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                           G + +  K       +  S + + +   
Sbjct: 703 --------------------------------GVSNKEAKHYIESYLAHYSGVDSYMKNV 730

Query: 528 FEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            E+   +G    +  +RR++P +   K                                 
Sbjct: 731 VEKANADGYVETMFGRRRNLPELTSSKHM------------------------------- 759

Query: 587 LTREYTYGGKLTENI-VQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
                 +G ++  N+ +Q  + DI+   M+              +VL VHDE++ E P  
Sbjct: 760 ---IRAFGERVARNMPIQGTAADIIKIAMIKVDERMKAENLRARLVLQVHDELIVEAPQD 816

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           +    +++    M +       +PL A+ 
Sbjct: 817 ESMRVALIVQEEMENAVK--MSVPLTADA 843


>gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100]
          Length = 864

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 106/628 (16%), Positives = 186/628 (29%), Gaps = 166/628 (26%)

Query: 46  DCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           D    DP   + +K  L +       H++        A     + +        +A    
Sbjct: 351 DLADLDPKDEKAIKTWLADPASPKWFHDAK---RAFHALAPQGLELDGVEHDASIAAYLL 407

Query: 105 LPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            P   +  +G+ L                       +    R  P + + +         
Sbjct: 408 RPDVRISGLGDIL-----------------------QSQAGRELPANADGFDRAQ--AVR 442

Query: 164 DVTVTREIFKRLEPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVER 215
           D+     + ++L   ++K++EL+Y        +   +   G  VD      L+     + 
Sbjct: 443 DLVK--VLTEKLA--AAKQEELYYDLEVPLCLILARMEHEGIAVDGEHLQELSNDYAAKI 498

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
            +       L      +    ++L+  LF +  L     T+T      +  +KLT Q   
Sbjct: 499 DEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTGYSTAAAELEKLTAQTNH 558

Query: 276 VFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            F   + A R        ++ L+EA+  DGR+  T                         
Sbjct: 559 PFLAHLMAHREYQKMKTTIDGLIEAIGDDGRIHTT------------------------- 593

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
                  +Q         +SDP+   I         +R+   A  G+ L+ AD + IE R
Sbjct: 594 ------FNQKGAATGRLSSSDPNLQNIPVRTDAGRRIRAAFHAGWGETLLTADYSQIEMR 647

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           V+A ++ ++  ++A+++GEDL+    +R F+V   QVT + R   K +   L Y   A  
Sbjct: 648 VMAHLSQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVKALSYGLVYGLSAFG 707

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +     G++                                                K
Sbjct: 708 LSQ---QLGISAGEA--------------------------------------------K 720

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                  +R   +   L +   Q  E G       RR                 LP   S
Sbjct: 721 VIMENYFTRFGGVKRYLDEVVHQAKETGYTETLYGRRRY---------------LPELNS 765

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
                                RE      L   I Q  + DI+   M+   +A       
Sbjct: 766 SNRV----------------ARENAERAALNAPI-QGTAADIIKLAMLRVDRAIREQNLK 808

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH 649
             ++L VHDE+V E    +    S L  
Sbjct: 809 SRVLLQVHDELVVEVAKGELDKVSELVQ 836


>gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
 gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
          Length = 886

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/630 (15%), Positives = 192/630 (30%), Gaps = 137/630 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALK 110
           + ++  L ++++    ++ +  R  L   +   I        + LA     P      L 
Sbjct: 365 EPVRAWLADSEIPKRGYDLH--RIDLALHWQ-GIAFAGAAFDVHLAAYLLDPTESNQTLS 421

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +     L+  + +E       F KG  ++         H     L              
Sbjct: 422 GLASKYGLAYLQADE-----DVFGKGAKYKVPDVDKLSEHMARKCLAVSELVPIQEKELA 476

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             + L      E  L  +   +  +G  V+      L +  + +  KL QE+  +  G  
Sbjct: 477 ANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIA-GTE 535

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L   LF++  L +   T+T         +KL P                   
Sbjct: 536 FNLNSPKQLGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPY------------------ 577

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                        +R  LQ+   ++           +      + H    Q I       
Sbjct: 578 ----------HDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTYYRQTIAATGRLS 627

Query: 351 TSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +  P+   I         +R   + SE G  ++ AD + IE RVLA ++ ++   +AF  
Sbjct: 628 SQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVH 687

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
             D++  T    F V   +V  + R   K +   + Y        +      +     A 
Sbjct: 688 DMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAAA 744

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +       ++ +     R   +   + A +D ++                         
Sbjct: 745 FID------QYFEVFQGVRRYMDVIVKQAKQDGYV------------------------- 773

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTT 583
                      K ++ R+R                  LP   +  +       R+ +NT 
Sbjct: 774 -----------KTLLERRRY-----------------LPEINASNFNLRSFAERTAMNTP 805

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETP 637
                             +Q  + DI+   M++  KA +       ++L VHDE+V E P
Sbjct: 806 ------------------IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVP 847

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + + E    ++  +M+        +PLK+E
Sbjct: 848 EDELEVMKELVPDVMSQALK--LSVPLKSE 875


>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
 gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
          Length = 886

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 107/643 (16%), Positives = 188/643 (29%), Gaps = 141/643 (21%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           V   D        +        ++     H +     +L         ++       +A 
Sbjct: 355 VIAVDLSDIDPQDEKALAQWLRSETPKYLHEAKATFHMLS---GRGFELNGVAHDTAIAA 411

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-- 159
               P          +    K    + L  +    ET   L   + P+  E         
Sbjct: 412 YLLRPG--------QRTYDLKDVYQRHLQRQLSGDETQGQLSLLDAPDSEELIDSVIAIL 463

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
               ++T   E     E     E  L  +   +   G  VDV       ++      + +
Sbjct: 464 ELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQLKVFIERVQEHE 523

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
               ++      +    ++L+  LF   GL     T+T         + L  +    F +
Sbjct: 524 AAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTAAKEIEALAVKHPDPFLD 583

Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + A R        L  L++A+ SDGR+  T                             
Sbjct: 584 HLLAHRENQKLKTTLEGLIKAVGSDGRIHTT----------------------------- 614

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLA 390
              +Q +       +++P+   I         +RS  +  EG   L+ AD + IE RV+A
Sbjct: 615 --FNQTVASTGRLSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMA 672

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++A+  GEDL+    +R F V   QVT + R   K M   L Y   A     
Sbjct: 673 HLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAF---G 729

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +     +                                                 K+  
Sbjct: 730 LGQQLNIPAGEA--------------------------------------------KQIM 745

Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                R   +   L    EQ  ++G  + +  +RR +P              L S   + 
Sbjct: 746 TSYFERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLP-------------ELGSDNRVA 792

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG--YD 623
             +    R+ LN                    +Q  + DI+   M+       KAG    
Sbjct: 793 RENA--ERAALNAP------------------IQGTAADIIKVAMIRVDQELKKAGVVSR 832

Query: 624 IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           ++L VHDE+V E  P+  E    ++   M +  S    L + A
Sbjct: 833 VLLQVHDELVVEIAPNELEQVREIVEKEMDAAISLRVPLEVSA 875


>gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 877

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 99/632 (15%), Positives = 202/632 (31%), Gaps = 153/632 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L N ++     ++   R ++   +N  I +      L++A     P+           + 
Sbjct: 362 LANGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR----TV 414

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175
            KM+E   +       ++ E +Y +          +  E+    V V  ++ +       
Sbjct: 415 AKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFVEELK 467

Query: 176 -----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                E  +  E  L  +   +  +G  VD      + + +     +++QE+  L  G  
Sbjct: 468 KNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEIYKLA-GTE 526

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF    L +   T+T       VL            + + R    +  
Sbjct: 527 FNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQL-GKLN 585

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ ++ D                               S+ H   +Q++T   
Sbjct: 586 STYIEGLLKVVHED------------------------------SSKIHTRFNQVLTQTG 615

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              ++DP+   I         +R   + SE G  +  AD + IE RVLA +A ++  ++A
Sbjct: 616 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+   D++  T    F V   +VT + R   K +   + Y        +     G+    
Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKA 732

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +      E++ ++    +   E+  + A +  ++ T   R     R+    ++   
Sbjct: 733 AAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIPEITS-- 779

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                                       R+   R     R+ +N
Sbjct: 780 --------------------------------------------RNFNLRSF-AERTAMN 794

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCE 635
           T                   +Q  + DI+ + M+       + G    ++L VHDE++ E
Sbjct: 795 TP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFE 836

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
            P  +      L   +M      A  +PLK +
Sbjct: 837 APKEEIEKLEQLVPEVMEHAIELA--VPLKVD 866


>gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300]
 gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300]
          Length = 889

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 443 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 502

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    ++   KL QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 503 GIKVKKETLLEMQAENELIIEKLTQEIYELA-GEKFNINSPKQLGVLLFEKLGLPLEYTK 561

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + +  DG++      
Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 614

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 753

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++     +L    M    
Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKVLVKQTMEEAI 869

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 870 Q--LSVPLIAD 878


>gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 877

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 106/616 (17%), Positives = 208/616 (33%), Gaps = 134/616 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV 112
             LK   E+  +  ++ +   E  +L     LDI +      L+L      PS  +    
Sbjct: 355 SELKNIFEDKTINKISFDIKEEMVLLDK---LDIDLIGPYDDLMLMHYLIDPSRSSYDLK 411

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             +    + +++  + LI +  K + +  +   +      +     E  +  V      +
Sbjct: 412 LLSQSYLTYELDSDESLIGKGAKTKKYAEVDQDDLAKLLASQVNAIEDSRDKVFKNLAEY 471

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           + ++   + E+ L  +  ++   G+  D  +   L   ++ +   +  E+  L  G   +
Sbjct: 472 EMVDLYENIEKRLARVLASMEIIGFGTDRKILEGLKADLEKQIEAITSEIYDLA-GSEFN 530

Query: 233 SRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T   T  +VL   +   P   ++   R    +    
Sbjct: 531 INSTKQLGEVLFKDLDLPVVKKTKTGFSTDAKVLEKLRDKHPIIEKIERYR-EIYKLRST 589

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L  A++ DGR+R T +                 QN+                    
Sbjct: 590 YIEGLENAIDEDGRIRSTFR-----------------QNI--------------ASTGRL 618

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            + +P+   +         +R    A EGK L+ AD + IE R+LA +A ++    AF  
Sbjct: 619 SSQEPNLQNLPIKTDEGRAIRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFNR 678

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T +  F+    +VTK QR+  K +   + Y           S  GL+ N    
Sbjct: 679 GIDIHTQTASEVFHTPLDEVTKLQRSEAKAVNFGIIYG---------ISDYGLSQN---- 725

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                        A+ +    ++++P                            ++   +
Sbjct: 726 ------LNIPRPRAKEYIDKYKKSYP----------------------------QIKEYM 751

Query: 525 HQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
               +     G    + ++RR +P +              S R+   R  G  R  LNT 
Sbjct: 752 DDVVQLARSQGYIETLFKRRRYIPEI--------------SSRNFNVRSFGE-RIALNTP 796

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETP 637
                             +Q  + DI+   M      +        I+L +HDEI+ E+ 
Sbjct: 797 ------------------IQGTAADIIKIAMIDTYNKLKEEGLDAKIILQIHDEIIIESS 838

Query: 638 DTDEFNA-SMLYHLMT 652
           + D+  A  +L   M 
Sbjct: 839 EKDKEKARDILKKCME 854


>gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 894

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 99/673 (14%), Positives = 198/673 (29%), Gaps = 137/673 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           + K G+    E+  +I       D  +                 A   +DV  VA N   
Sbjct: 326 IEKIGLSIVREN-ELIAVGITLSDTEIYYIPVSG---FVTESYLADRLSDVVSVASNRNI 381

Query: 76  ERTVLKACF---------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME-- 124
               +K               +   +      +A     PS      E+L      +   
Sbjct: 382 ASANIKDYLDIFEKDKINGYPLVSEKAFIDTAIAAYLLHPSNESYDYESLGREFLSLTYP 441

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQ 183
              EL+ +    +      D            +  Y   D    +   + +  L  + E 
Sbjct: 442 SKTELLGKLSINKAVNEAED--NLIKYACLSSYAYYKCADKITEQLKSENMYELFETIEM 499

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L ++   +  +G  VD       ++++  + + L++E+     G   +    ++L   L
Sbjct: 500 PLIFVLFEMQQQGISVDKQALVDYSKVLGTKISVLEKEIYE-AAGEEFNINSPKQLGVIL 558

Query: 244 FLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           F   G+     T++   T   VL       P   ++   R  A                 
Sbjct: 559 FERLGMPNGKKTKSGYSTAADVLEKLAPDYPVVSKILEYRQLA----------------- 601

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                         +           Q +    R H   +Q IT      +++P+   I 
Sbjct: 602 --------------KLKSTYADGL-TQYISEDGRIHGTFNQTITATGRISSTEPNLQNIP 646

Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R   +  +G   + AD + IE R+LA M+G++  ++A+ +  D++  T A+
Sbjct: 647 IRMEMGKAIRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADIHRATAAQ 706

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT +QR   K +   + Y   +    +      ++       ++   A   +
Sbjct: 707 VFGVPLEEVTDEQRRNAKAVNFGIIYGMSSFGLSQ---DLSISRKEAKEYIERYFAS--Y 761

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
              + F   +  +  E                                            
Sbjct: 762 PTIKTFIDGLVSDAKEKGYS---------------------------------------- 781

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              +  +RR++P +   K  N +                  R  +N   +         G
Sbjct: 782 -LTMYNRRREIPEI---KSSNFMQRSF------------GERVAMNAPIQ---------G 816

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655
              + I  A+   I     +        ++L VHDE++ ET + +      +  +M    
Sbjct: 817 TAADIIKLAM---INVYNALKEHNLRSRLILQVHDELLVETAEDE---VDTVKQIMLDGM 870

Query: 656 SWAKGL--PLKAE 666
             A  L  PL+ +
Sbjct: 871 KNAVSLKVPLEVD 883


>gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7]
 gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7]
          Length = 856

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 89/531 (16%), Positives = 169/531 (31%), Gaps = 134/531 (25%)

Query: 149 NHREAWRLFGEYCKGDVTVT-----REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
            +R     F + C             E  + L+  +  E  L  +  ++   G   D   
Sbjct: 421 TYRSDMGDFADVCSLLPLAENLKLQLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTNG 480

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---Q 260
                + +  +   L +++  L  G   +    ++L   L+ + GL  +  T++      
Sbjct: 481 IREFGKWLKKDIEALTKQIYDLAGG-EFNIASPKQLGEVLYEKLGLPAKKKTKSGYSTNA 539

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL       P    V   R    + +   ++ L++ + SDGR+                
Sbjct: 540 EVLEELADKHPIVRLVLEYRTLT-KLSSTYVDGLLKEVESDGRV---------------- 582

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKK 375
                          H    Q  T      +++P+   I     I   +R   +A EG  
Sbjct: 583 ---------------HSVFKQTETRTGRISSTEPNMQNIPVRKEIGRNMRKFFVAGEGCT 627

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE RVLA + G++   K FE G D++  T ++ F +    V  + R+  K +
Sbjct: 628 LLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHAMTASQVFGIPADMVLPEMRSAAKAV 687

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y  GA +        G+++      +K                            
Sbjct: 688 NFGIIYGIGAFSLS---KDIGVSVAEAKQYIK---------------------------- 716

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKD 554
                         +     +VS+    + +  E  I+NG    I  +RR +P +     
Sbjct: 717 -------------NYLDNFPKVSQF---MDKTVEDGIKNGYVTTIFGRRRYIPELSATNK 760

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                                 R+ +N                    +Q  + DI+   M
Sbjct: 761 ---------------VMQAFGKRAAMNAP------------------IQGAAADIIKIAM 787

Query: 615 MNA------TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWA 658
           +         K    ++L VHDE++ E  P+  +  +++L   M +    A
Sbjct: 788 VKVYQRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVLKEEMENAVKLA 838


>gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171]
          Length = 567

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 190/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQ 121
           +D + V +++      +     L   +      ++LA     PS         A++    
Sbjct: 55  SDASKVVYDAKKTMVAMHR---LGYTVSGITFDIMLASYLLNPSDSIADFTSVAIRHDYT 111

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A  +  +    D     E  ++L  +  
Sbjct: 112 EVETDEAVYGKGAKRSTPEESIVAPHLARKAVAIAVLEKRLLDD----LEKNEQLALMED 167

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 168 LELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 226

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 227 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 271

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 272 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 315

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 316 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 375

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 376 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFV 432

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +   + + + +     E    +                                   
Sbjct: 433 S--YPAVKEYMQDIVRFAKEKGYXE----------------------------------- 455

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  I  +RR +P +                R+   R     R+ +NT         
Sbjct: 456 ------TILHRRRYIPEI--------------VSRNFNVRGF-AERTAMNTP-------- 486

Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M      + + K    ++L VHDE++ E P+ +     
Sbjct: 487 ----------IQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLE 536

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 537 EIVPDVMENAVE--LSVPLKVD 556


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 106/683 (15%), Positives = 199/683 (29%), Gaps = 171/683 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---------PVMPQ 55
            ID +T    D     +    ++  ++ F+F F+D         H+              
Sbjct: 296 NIDADTLVAFDTETTDVD--TQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFAA 353

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
                +    V     N  ++  V+K    L+ P   +  T++LA      S++     A
Sbjct: 354 WAISQIYKGCVI--GQNLKYDFKVVKRNLGLE-PPVNFKDTMILAWLMDPGSSVGMDALA 410

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +L      + ++++              R +     A     +Y   D  +T + +K  
Sbjct: 411 KRLYDYDTIKFEDVVK-------------RGETFASVALENAAKYAAEDAWITLKFYKSF 457

Query: 176 EPLSSKE-------QELWYLDQ--TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             L   E        E  ++     +   G  ++      L    D +   L  E+  LT
Sbjct: 458 LNLLDPELLALADTHEFAFILTLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYELT 517

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283
            G   +   +++L + LF    L ++  T+T       VL+      P   ++   R   
Sbjct: 518 -GENFNINSVKQLGSVLFEHLKLPVKKKTKTGYSTDEAVLAELIDEHPVIEKLLEYRELY 576

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSHEELD 340
              +                                     P  NL +    SR +    
Sbjct: 577 KLQSTY---------------------------------CEPLLNLAKKDANSRIYTNFI 603

Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q  T      + +P+   I +       VR C  A      V  D + IE R+LA  + +
Sbjct: 604 QTGTSTGRLSSKNPNLQNIPARGALAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRD 663

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF   ED++  T    F  A  Q     RA+ K +   L Y  G+    K+A+  
Sbjct: 664 EALLRAFANDEDIHARTAISIFGSAEGQN----RAVAKSINFGLIYGMGSS---KLANQV 716

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +        ++                                          + +   
Sbjct: 717 SITRAEAKEYIE-----------------------------------------RYFKAFP 735

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +      +  A +                         +  +  +L   R   +     
Sbjct: 736 TIKGFLEGIKTAAKN------------------------EGFVRTLLGRKRLFDF----- 766

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG---YDIVLTVHDEI 632
                  TT    +   Y  +    I Q  + DI+   M+           ++L +HDE+
Sbjct: 767 -------TTATPMQTAMYEREAVNTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDEL 819

Query: 633 VCETPDT--DEFNASMLYHLMTS 653
           + E  D   +EF A+    +M  
Sbjct: 820 IFEVQDGYAEEFGAAA-QKIMQE 841


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 108/622 (17%), Positives = 203/622 (32%), Gaps = 98/622 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDP--VMP-QV 56
             + +D ET S             +     ++  +   D+         H     +P + 
Sbjct: 325 KKIALDLETTS------------LDPFEGKIVGISIAVDEGKAFYIPIAHVGAKNIPIES 372

Query: 57  LKEALEN---TDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAV 112
           +K+ L +   +  T+  HN  F+   +        IP    +    L   N     L  +
Sbjct: 373 VKKFLRDLFNSGKTVGGHNIKFDLKFISRLGIEPQIPSFDSMIEAYLLNPNEKKFNLDEL 432

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              LKL   KM   ++L+         + +                +Y   D  ++  I 
Sbjct: 433 S--LKLLGHKMISYEDLVK--------DTIPLFAGDFSYIPVDTAVKYSCEDADMSLRIH 482

Query: 173 KRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             L PL             E  +  +   +   G   D+   + L+Q +D +   L   +
Sbjct: 483 NLLHPLIYSNEMNELYEKIELPMILVLANLELNGVYFDIQYLNNLSQEMDKKLLALSNRI 542

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             +T G   +    ++L   LF +  L     T T    T   VL         A  +  
Sbjct: 543 FEIT-GEAFNLNSPKQLGYILFEKLKLPSVKSTSTGAYSTDVEVLEYLANEYEIAKLILE 601

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                          +    +         P        R H  
Sbjct: 602 -------------------------------YRKIQKLKSTYVDAIPNMVNKNTKRVHAS 630

Query: 339 LDQIITHLPTSITSDPDPLQIISDC-----VRSCVIAS-EGKKLVVADLAGIEARVLAWM 392
            +Q  T      +SDP+   +         +R  V    +G  ++ AD + IE RVLA +
Sbjct: 631 FNQTGTATGRLSSSDPNLQNLPGRSDEGKEIRMAVKPQKDGWYILGADYSQIELRVLAHI 690

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
             +   + AF+  +D+++ T  + F V+   +T++ R IGK++  A+ Y         +A
Sbjct: 691 TEDPNLINAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFAIVYGVSPY---GLA 747

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             TGL++     +++       + D     +    N  E A ++ ++ T   R K+   Q
Sbjct: 748 KRTGLDVKDTKKMIEA------YLDYYKNVQEYMANIKEFAKKNGYVRTMFGR-KRDIPQ 800

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571
            +S+   +  E  +    T   G A    K   + +    KD+    +++L     LV+ 
Sbjct: 801 INSKDQNIRAEGERIAINTPIQGSAADIMKIAMIRIYERLKDEKLQSMMILQVHDELVFE 860

Query: 572 DVGNNRSYLNTTTRQLTREYTY 593
              N   Y     ++L +E   
Sbjct: 861 VPENEVEY----VKKLVKEEME 878


>gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 873

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 135/417 (32%), Gaps = 58/417 (13%)

Query: 162 KGDVTVTREIFKRL-------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             DV     + + L       E     E  L  +   +   G  +D  +   + + +  +
Sbjct: 448 AQDVEALMPVLEGLMAERGLTELYRDIELPLTKVLANMEVNGITLDKGMLDEVTKSMTKQ 507

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271
              L+Q+ +    G   +    ++L   LF + GL +   T++       VL   +   P
Sbjct: 508 VADLEQKAKEEA-GEDFNVNSPKQLGVILFEKLGLPIIKKTKSGYSTDVSVLEQLQGEHP 566

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                           +   +++   S+          P   P 
Sbjct: 567 I-------------------------------IETIMEYRTLSKLLSTYLVALHPLINPN 595

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIE 385
             R H   +Q+ T      ++DP+   I         +R   +  +G   L+  D + +E
Sbjct: 596 TGRIHTHFNQMATVTGRLSSTDPNLQNIPTRTEVGKQMRRMFVPGKGYDLLMSCDYSQVE 655

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A +AG++  + AF  G+D++  T +  F V    VT   R+  K +   + Y    
Sbjct: 656 LRVMASIAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGIIYGISD 715

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +    G+  +  A  + +  A           +   E   + A E  ++ T   R
Sbjct: 716 F---GLGRQLGVPRSEAAQYIDSYFARYT------GVKEYMEGEKKKAREMGYVETLFGR 766

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            ++     H++     +   +    T   G A    K   + +    K+      +L
Sbjct: 767 -RRYLPDIHAKNFNRRSFAERTAINTPIQGTAADIIKIAMLHVAKELKEAGVKSRVL 822


>gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
 gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
          Length = 926

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 96/618 (15%), Positives = 196/618 (31%), Gaps = 99/618 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKEA 60
             D ET S   L        A  V + L A   +           D  +      +L+  
Sbjct: 357 SFDTETDSKDALR-------ANIVAITLCA---ESGRAFFIPLPEDEEIGKRRLDLLRPL 406

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
             +T +  V  N  ++  VL       I +   +   ++A     P         A  L 
Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY---GIEVRGQLFDTMIAHYLLFPDLRHNMDEMAETLL 463

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +     +L+     G   + ++ R  P      +   +Y   D  +T ++++RL  + 
Sbjct: 464 GYRTIHYSDLV-----GSDKQEVHIRQVP-----LQNLADYAMEDADITWQLYERLNAML 513

Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           S+          E  L  +   +   G  +D  +       +  E  +++ E+  L  G 
Sbjct: 514 SEAGMTSLFESIEMPLVPVLVDMERSGVKLDTEVLRRTASRLGEEMQRIEDEIYRLA-GH 572

Query: 230 VSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             +     ++ T LF E  +      T++    T + +L   ++  P             
Sbjct: 573 SFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIV----------- 621

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                               R  L + G  +         P    P   + H   +Q + 
Sbjct: 622 --------------------RLILDYRGIKKLLSTYVEALPEMRYP-DGKLHTSFNQTVA 660

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                 +S+P+   I         +R+  +        + AD + IE R++A ++ ++  
Sbjct: 661 TTGRLSSSNPNLQNIPIRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESL 720

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF  GED++  T ++ + +   +VT D R   K     + Y   A     ++    ++
Sbjct: 721 IQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAF---GLSERLNIS 777

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 L++   A           +   +     A    ++ T   R K+  R  +S  +
Sbjct: 778 RTEAKALIEGYFASYP------GVKAYMDRSIAEAKRQGYVTTLFGR-KRFLRDINSANA 830

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNN 576
            +     +        G A    K   +  ++ +  +  L   ++L     L +    N 
Sbjct: 831 VVRGYAERNAINAPIQGSAADLIKLAMIR-IHEEITERKLRSRMILQVHDELNF----NV 885

Query: 577 RSYLNTTTRQLTREYTYG 594
                   R+L R    G
Sbjct: 886 LRPEAAEVRELVRSCMEG 903


>gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99]
          Length = 875

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 102/660 (15%), Positives = 207/660 (31%), Gaps = 139/660 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F   +D     +         P+++   LE+       H++      +K  
Sbjct: 327 YLKD-ELLKFGL-YDGEQYVVIPFDKVNEYPELVAW-LEDETTQKWVHDAKKTYIAMKRS 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              DI I   +   +LA     P   ++ V   +    Q     ++ ++ + KG++    
Sbjct: 384 ---DIAIENVVFDTMLASYIIDPSRTIEDVQSVMTHFDQTF--VQDDVSVYGKGKSFHIP 438

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            D     H  +        +  +    E  ++   LS  E  L  +   +   G   D+ 
Sbjct: 439 EDDILDKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDID 498

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261
               +  ++  E  +L +++     G   +    ++L   LF +  L +   T+T     
Sbjct: 499 TLKEMETVIQTELDQLIEQIHEQA-GEKFNINSPKQLGVILFEKLELPVIKKTKTGYSTA 557

Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +   P    +   R   S+     +  L + +  DG                 
Sbjct: 558 VDVLEKLQNAHPIIDNILTYRTL-SKLQSTYVEGLQKVIWDDG----------------- 599

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EG 373
                         R H   +Q +       + DP+   I         +R    ++ E 
Sbjct: 600 --------------RIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKSTHED 645

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             ++ AD + IE RVLA + G+    +AF   ED++ TT  + FNVA  +VT   R   K
Sbjct: 646 YVILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAK 705

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y        +   + G+        +       ++ +     +   +N  + A
Sbjct: 706 AVNFGIVYGISDYGLSQ---SLGITRKEAQRFID------DYLNHFPGVKDYMDNIVQDA 756

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
            +  ++ T                                       ++RR +P +  + 
Sbjct: 757 KQQGYVETLL-------------------------------------KRRRYIPDITSRN 779

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                     + R          R+ +N+                   +Q  + DI+   
Sbjct: 780 F---------NLRGFA------ERTAMNSP------------------IQGSAADIIKLA 806

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666
           M+   +          ++L VHDE++ E P  +       +  +M         +PL  E
Sbjct: 807 MVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVE 864


>gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048]
 gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048]
          Length = 891

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 102/638 (15%), Positives = 202/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L N ++     ++   R ++   +   + I      L++A     P+       
Sbjct: 370 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475

Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            LE L   EQ          L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AF    D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 PGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   +   + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
          Length = 879

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 113/670 (16%), Positives = 214/670 (31%), Gaps = 157/670 (23%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +   +++      ++     +A  +  V I      F+R+ 
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           VL +   +D+P         LA+          +    +L +    E  E++        
Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192
           +     R  P          +  K        + ++L        L   E  L  +   +
Sbjct: 430 YGKGAKRAVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKM 489

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  V     + +     V   KL QE+  +  G   +    ++L   LF + GL LE
Sbjct: 490 EIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548

Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
               T+T     +   ++L P A  V                               L++
Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              ++             L    + H    Q +T      + DP+   I         +R
Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              + S E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T      + +     +
Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              +N    A +  ++ T                                        +R
Sbjct: 751 AYMDNVVREAKDKGYVETLF-------------------------------------HRR 773

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R++P +              + R+   R+    R+ +N+                   +Q
Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800

Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656
             + DIL   M+N  KA    GY   ++L VHDEIV E P+ +      L    M +   
Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMEALVKETMEAAVE 860

Query: 657 WAKGLPLKAE 666
            A  +PL A+
Sbjct: 861 LA--VPLIAD 868


>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
 gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
          Length = 929

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 102/639 (15%), Positives = 180/639 (28%), Gaps = 150/639 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++L+  LE+  V  VA N+ ++  VL        PI   +     A   GL       G 
Sbjct: 405 EILQPMLEDRSVMKVAQNAKYDVKVLANYGVEVAPIDDTMLLSY-ALHAGL-HNHGMDGL 462

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +         K LI         +  +DR              Y   D  +T    K 
Sbjct: 463 AERYLGHTPLPIKSLIGSG----KSQITFDR------VPIADAAPYAAEDADITLRFHKL 512

Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +P              E+ L  +   +   G  VD  +   ++     +   L+ E+  
Sbjct: 513 FKPKLHQVGVTKVYERLERPLVPVLARMERSGIKVDKDVLSRMSNAFAQKMAGLEAEIHE 572

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +     +L   LF + GL      +    +T   +L           +V + R
Sbjct: 573 LA-GESFNVGSPAQLGEILFDKMGLQGGKKGKTGKYSTGADILEDLATEHDLPGRVLDWR 631

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+                  R H    
Sbjct: 632 QL-------------------------------SKLKSTYTDALQDHINADTGRVHTSYS 660

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
               +     ++DP+   I         +R   +A  GK LV  D + IE R+LA +AG 
Sbjct: 661 IAGANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKVLVALDYSQIELRILAHIAGI 720

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                AF+ G+D++  T +  FNV   ++T D R   K +                    
Sbjct: 721 DALKDAFKDGQDIHAATASEMFNVPLEEMTPDVRRQAKAIN--------------FGVIY 766

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A  ++   A     +A+ F     E                         +  
Sbjct: 767 GISGFGLARNLRIPRA-----EAQGFIDRYFE-------------------------RFP 796

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +    ++  +  ++                          NL +    GR +   ++  
Sbjct: 797 GIRTYMDDTKKFAKE--------------------------NLYVQTLFGRKIHTPEINA 830

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631
                    R                +Q  + DI+   M+    A       ++L VHDE
Sbjct: 831 KGPGAGFAGR----------AAINAPIQGTAADIIRRAMIRMEDAIEGIPAKMLLQVHDE 880

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667
           +V E  +       +    +M      A    +P+  + 
Sbjct: 881 LVFEVDEDATDTLIARAREVMEGAADPAVHLSVPITVDA 919


>gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S]
          Length = 875

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 185/622 (29%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           +D T V +++      +     + + I      ++LA     PS         A++    
Sbjct: 363 SDQTKVVYDAKKTIVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEKNEQLALMED 475

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L+  + SL  G   +    ++L 
Sbjct: 476 LELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLA-GEEFNINSPKQLG 534

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF +  L     T+T   T   VL S         ++   R                 
Sbjct: 535 VILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+         K    ++L VHDE++ E P+ +     
Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864


>gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988]
 gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561]
 gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161]
 gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818]
 gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818]
          Length = 875

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 185/622 (29%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           +D T V +++      +     + + I      ++LA     PS         A++    
Sbjct: 363 SDQTKVVYDAKKTIVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEKNEQLALMED 475

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L+  + SL  G   +    ++L 
Sbjct: 476 LELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLA-GEEFNINSPKQLG 534

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF +  L     T+T   T   VL S         ++   R                 
Sbjct: 535 VILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+         K    ++L VHDE++ E P+ +     
Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864


>gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
 gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
          Length = 889

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 96/551 (17%), Positives = 169/551 (30%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P                V     + ++L        L   EQ L  +   +   
Sbjct: 443 GVKKAIPERETFLEHLVRKVAVLVETEPVLLEKLSENGQLDLLYDMEQPLALVLAKMEIA 502

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    ++   KL QE+  L  G   +    ++L   LF + GL +E   
Sbjct: 503 GIKVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGELLFEKLGLPIEYTK 561

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 614

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 753

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809

Query: 603 QAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA         ++L VHDEIV E P ++  +   L    M    
Sbjct: 810 QGSAADILKIAMIQLDKALVAGRYQTKMLLQVHDEIVLEVPKSELASIKKLVKQTMEEAI 869

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 870 Q--LSVPLIAD 878


>gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1]
 gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1]
          Length = 941

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 106/636 (16%), Positives = 198/636 (31%), Gaps = 149/636 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE   +  +  N  ++  VL       + +  +  T++L+    L + L   G   
Sbjct: 418 LKPLLEAAHILKIGQNIKYDMVVLAKY---GVDVAPYDDTMLLSY--DLDAGLGGHGMD- 471

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +L+ + ++ G       C     +  +D+          +  EY   D  VT  +++ L+
Sbjct: 472 ELAQRHLDHGCIEFKTVCGTGKSQISFDK------VTLDVATEYAAEDADVTLRLWQLLK 525

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              + E          + L  +   +   G  VD      L+     E T+L+  + +  
Sbjct: 526 GRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLSAEFSGEATRLEAAIHAEA 585

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRMRASR 285
            G   +    ++L   LF + GL      +T      ++  ++L    + +         
Sbjct: 586 -GTPFTVGSPKQLGDILFDKMGLKGGRKGKTGVYSTDVTELERLAGDGVAI--------- 635

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                              R  L +   ++           Q  P   R H      +  
Sbjct: 636 ------------------ARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSMAVAQ 677

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                ++DP+   I         +R   +A  GK ++ AD + IE R+ A MA       
Sbjct: 678 TGRLSSTDPNLQNIPIRSDHGRRIRDAFVAEPGKLILSADYSQIELRLAAHMADVPALKD 737

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T    F     +V +D RA  K +  ++ Y  G  A+  +A    ++  
Sbjct: 738 AFARGDDIHALTAQEVFG----EVNRDTRARAKTINFSILY--GISAW-GLAGRLEVSR- 789

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                          E+A+          P                       +  ++  
Sbjct: 790 ---------------EEAQGMIDRYFSRFP---------------------GINHYIAAT 813

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             ++             +  RK                   LP  RS             
Sbjct: 814 LGQVRDQ-----GYVSTLFGRKTH-----------------LPWIRSA------------ 839

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEIV 633
               +Q  R+      +   I Q  S DI+   M+    A          ++L VHDE+V
Sbjct: 840 ----KQGERQSAERQAINAPI-QGTSADIIKRAMVRMNPALAAAGLGDVKMLLQVHDELV 894

Query: 634 CE-TPDTDEFNASMLYHLMTSNPSWA--KGLPLKAE 666
            E  P+  E  ++++  +M           +PL  E
Sbjct: 895 FELAPEQVEPASAVIRAVMAGAAEPIVRLSVPLGVE 930


>gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478]
          Length = 900

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 91/527 (17%), Positives = 161/527 (30%), Gaps = 129/527 (24%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                     +            L+  E  +  +   +   G  VD+ L   L Q    +
Sbjct: 474 ARAVADLAEALDAELARIDSTALLADMELPVQRVLADMERAGIAVDLRLLAEL-QSQFAD 532

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           + +   E      G   +    ++L+  LF E G+     T+T       + + L  +  
Sbjct: 533 QIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAVQGLFEKTG 592

Query: 275 QVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             F   + A R      + ++ L+ ++ +DGR+  T                        
Sbjct: 593 HPFLQHLLAHRDVTRLKVTVDGLLNSVAADGRIHTT------------------------ 628

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIE 385
                   +Q I       +++P+   I         +R   +   G  +L+ AD + IE
Sbjct: 629 -------FNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVGAGYSELMTADYSQIE 681

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   K M   L Y   A
Sbjct: 682 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSA 741

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                    +                                                E 
Sbjct: 742 YGLSTQLKIS-----------------------------------------------TEE 754

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
            K    Q  +R   + + L    EQ  ++G       RR                 LP  
Sbjct: 755 AKVQMDQYFARFGGVRDYLMAVVEQARKDGYTSTVLGRRRY---------------LPEL 799

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
            S                + +  RE      L   I Q  + DI+   M+   KA     
Sbjct: 800 DS----------------SNRQVREAAERAALNAPI-QGSAADIIKVAMIEVDKALTEAG 842

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
               ++L VHDE++ E    +      L    M    ++   +PL+ 
Sbjct: 843 LASRMLLQVHDELLFEIAPGERERVEALVREKMGG--AYPLDVPLEV 887


>gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
 gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
          Length = 909

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 197/626 (31%), Gaps = 144/626 (23%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNG 104
             MP+ + + +E+ D+  +  N   +   L+           DI I  +I     +    
Sbjct: 381 ESMPKEIVDLIEDEDIEKIGCNIKSDYINLRPYGIRLGKIGFDISIAEYIIDSKTST--- 437

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
              +      A K   +KM   ++L+ +  K + +E +   +                  
Sbjct: 438 ---SYDFDVIASKYIYKKMTSEEDLLGKGAKAKKYEDIEKEDLDKFAIGIMNTLSGV--- 491

Query: 165 VTVTREIFKR--LEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           V   R+I K   +E L    E  L  +   +   G  VD      L  + +     L+ +
Sbjct: 492 VPKMRQIIKDDDMEKLLYDVEIPLIEVLGDMEYIGIHVDKKTLDELGVLFNDRIKYLETK 551

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFN 278
           +  ++ G   +    ++L   LF +  L +   T+T       VL   +   P       
Sbjct: 552 IYDIS-GEKFNINSPKQLGLILFEKLELPVIKKTKTGYSTNAEVLEKLRDKHPI------ 604

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                    +     +    +              P   R H  
Sbjct: 605 -------------------------IDMITDYRTVVKLKSTYVEGINNLINPLDGRIHSS 639

Query: 339 LDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q I       ++DP+   I     +   +R   +A +G KLV AD + +E RVLA M+
Sbjct: 640 FNQAIATTGRISSTDPNMQNIPVRTDLGRQLRRVFVAGQGSKLVDADYSQVELRVLADMS 699

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  ++AF+ G D++  T ++ F V   +V+ + R+  K +   + Y         +A 
Sbjct: 700 GDEDMIEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGIIYGKSDF---GLAK 756

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +++      ++   A                                          
Sbjct: 757 DLDISIAKAKEYIENYFAR----------------------------------------- 775

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
             ++    + +    E+  +     I  +RR +P +   K  N +               
Sbjct: 776 FPKIKGFMDHIVSDAEE--KGYSTTIFGRRRYIPEI---KSSNFV------------EKN 818

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLT 627
              R+ +N                    +Q  + DI+   M+N      +      ++L 
Sbjct: 819 RGIRAAMNAP------------------IQGSAADIIKIAMVNVHNRLEEEGLKSNLILQ 860

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMT 652
           VHDE++ E+P  +     + L   M 
Sbjct: 861 VHDELIVESPIEEVERVRVLLKEEME 886


>gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 882

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 113/640 (17%), Positives = 190/640 (29%), Gaps = 147/640 (22%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           VEL +   D    +VL + LE+       H +              I +        LA 
Sbjct: 361 VELGELSADEE--KVLVQWLESPA-PKYFHAAK---AAFHMLAGRGIELDGLAHDTALAA 414

Query: 102 SNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               P     +      +   + +    E ++          L D               
Sbjct: 415 YILRPGQRTYELSDVYQRHLQKSLGAATEQMSLL----DSSSLVD---------QAAAIM 461

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                +T   +     E  +  E  L  +   +   G  VDV +  T       +  + +
Sbjct: 462 ELAEKLTAELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 521

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +    L      +    ++L+  LF    +     T+T         ++L  +    F +
Sbjct: 522 RSARELAGDEKLNLNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLD 581

Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + A R        L  L++ +  DGR+                               H
Sbjct: 582 HLLAHREYQKMKTTLEGLIKTVQPDGRI-------------------------------H 610

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390
              +Q +T      +++P+   I         +RS  I  EG ++L+ AD + IE RV+A
Sbjct: 611 TTFNQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMA 670

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++A++ GEDL+    +R F+V   QVT + R   K M   L Y   A    +
Sbjct: 671 HLSADPGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQ 730

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                                           +G      K   
Sbjct: 731 Q-----------------------------------------------LGIPAGEAKSIM 743

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                R   +   L    EQ  ++G       RR                 LP       
Sbjct: 744 ESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRY---------------LPE------ 782

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI----VL 626
                    LN+  R L RE      L   I Q  + DI+   M+   +A  D+    +L
Sbjct: 783 ---------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALRDMKSRVLL 831

Query: 627 TVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            VHDE+V E  P   +    +L   M S       +PL+ 
Sbjct: 832 QVHDELVVEVAPGEADQVREILEREMDSAIE--LNVPLEV 869


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 115/710 (16%), Positives = 205/710 (28%), Gaps = 172/710 (24%)

Query: 1   MATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVH------ 49
           +  L  + E   T S ID     +          L        +         H      
Sbjct: 307 LKKLAEEIEKYKTFS-IDTETTSLDP----FEAKLVGISISTMEGKAYYIPVSHFGAKNI 361

Query: 50  -DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS- 107
              ++ + LK+ L+  D  IV  N  F+  + K   ++    +      ++A     P  
Sbjct: 362 SKSLIDKFLKQILQEKDYNIVGQNLKFDYEIFK---SMGFSPNVPHFDTMIAAYLLNPDE 418

Query: 108 -ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
                   +LK    KM    EL+               N            EY   D  
Sbjct: 419 KRFNLEELSLKYLGYKMISFDELVNE-------NVPLFGND-FSYVPLERAVEYSCEDAD 470

Query: 167 VTREIFKRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           VT  IF++L          +     E  L  +   +   G   D      L++    +  
Sbjct: 471 VTYRIFRKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEEYLKELSKKYQEKMD 530

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272
            + +++  +  G   +     ++   LF +  +     T T    T   VL    K    
Sbjct: 531 GIKEKVFEIA-GETFNLNSSTQVAYILFEKLNIAPYKKTATGKFSTNAEVLEELSKEHEI 589

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A  +                                 +    +         P     + 
Sbjct: 590 AKLLLE-------------------------------YRKYQKLKSTYIDSIPLSINRKT 618

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEA 386
           +R H    Q  T      +S+P+   +         +R  V        ++ AD + IE 
Sbjct: 619 NRVHTTFHQTGTSTGRLSSSNPNLQNLPTRSEEGKEIRKAVRPQRQDWWILGADYSQIEL 678

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA ++ ++  LKAF+   D++  T A+ F V+   V++  R +GK++  A+ Y     
Sbjct: 679 RVLAHVSKDENLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFAIIYGVSPY 738

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              K                                                IG +    
Sbjct: 739 GLSK-----------------------------------------------RIGLSVSET 751

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           KK           ++  L +  ++  + G    +  +RR +P +                
Sbjct: 752 KKIIDNYFRYYKGVFEYLKRMKDEARKKGYVTTLFGRRRYIPQL---------------- 795

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619
                      RS      ++  R            +Q  + DI+   M+N         
Sbjct: 796 -----------RSKNGNRVQEGERI------AVNTPIQGTAADIIKIAMINIHNRLKKEN 838

Query: 620 AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGY 668
               ++L VHDE+V E PD + EF   ++   M +       +PLK + Y
Sbjct: 839 LSSKMILQVHDELVFEVPDNELEFVKDIVKDEMENAVK--LDVPLKVDVY 886


>gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614]
 gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614]
          Length = 889

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 101/624 (16%), Positives = 186/624 (29%), Gaps = 140/624 (22%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L +     V H++      L A     +P+        L+     P   +       ++ 
Sbjct: 374 LADPKRPKVLHDAKGPMLALAAW---GLPLAGLDRDTALSAYLARPDQRSYDLADLTVRY 430

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             +++++G     +       + L DRN                  +    E       L
Sbjct: 431 LKRELKQGGADDGQLS----LDGLDDRNAGEIEMLHARAVLDLAAALDDELEERGGTRLL 486

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L  L   +   G  VD      L      E     ++   +  G   +    ++
Sbjct: 487 NDIELPLVDLLAKMEQTGIAVDTDHLEALESHFAAEVRDAAEQAFGVI-GKEINLGSPKQ 545

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLV 295
           L+  LF E G+     T+T       + + L  +    F   +   R        +  L+
Sbjct: 546 LQAVLFDELGMPKTKRTKTGYTTDADALQALYVKTEHPFLLHLLRHRDVSRLRQTIEGLL 605

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + +  DGR+  T                                +Q I       +++P+
Sbjct: 606 KTVAGDGRIHTT-------------------------------FNQTIAATGRLSSTEPN 634

Query: 356 PLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +R   +   G + L+ AD + IE R++A ++ +   ++AF++G D +
Sbjct: 635 LQNIPIRTEEGRRIREGFVVGPGYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFH 694

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T AR F+V    VT + RA  K M   L Y   A     +    G+  +    L    
Sbjct: 695 SITAARVFDVPADDVTVEMRAKIKAMNYGLAYGLSAF---GLGQQLGIEPSEARGL---- 747

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                     +       + + L    E
Sbjct: 748 ----------------------------------------MDEYFQTFGGIRDYLGGVVE 767

Query: 530 QTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           +  + G    I  +RR +P +                                T+  +  
Sbjct: 768 EARKAGFTETIWGRRRYLPDL--------------------------------TSDNRQR 795

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642
           RE      L   I Q  + D++   M+N  +A         ++L VHDE+V E    ++ 
Sbjct: 796 REMAERMALNAPI-QGSAADLIKIAMLNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQE 854

Query: 643 NASMLY-HLMTSNPSWAKGLPLKA 665
              +L    M +    A  +PL  
Sbjct: 855 PLEVLVREQMGAAADLA--VPLDV 876


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
           polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 152/452 (33%), Gaps = 68/452 (15%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191
           L D +        R +G     D      + +RL          E++L +L         
Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLS 440

Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                +   G  +DVA    L+  +  E  +L++E+  L  G   +    ++L+  LF E
Sbjct: 441 RVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499

Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             L     T+ T +R     VL + ++  P   ++  +R                     
Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359
                       ++         P    PR  R H   +Q  T      +SDP+   I  
Sbjct: 541 ------------TKLKNTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588

Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R   +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  
Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V P  V    R   K +   + Y   A    +++    +        +      E + 
Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            +    R   E   E   +  ++ T   R ++     ++RV  +     +        G 
Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A    K   V L    ++     ++L     L
Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604
                K +  +   L  GR   Y +   G  R   +   R +  RE           VQ 
Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            + D++   M        + G  ++L VHDE++ E P       + L    M      A 
Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816

Query: 660 GLPLKAE 666
            +PL+ E
Sbjct: 817 -VPLEVE 822


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 152/452 (33%), Gaps = 68/452 (15%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191
           L D +        R +G     D      + +RL          E++L +L         
Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLS 440

Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                +   G  +DVA    L+  +  E  +L++E+  L  G   +    ++L+  LF E
Sbjct: 441 RVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499

Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             L     T+ T +R     VL + ++  P   ++  +R                     
Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359
                       ++         P    PR  R H   +Q  T      +SDP+   I  
Sbjct: 541 ------------TKLKNTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588

Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R   +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  
Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V P  V    R   K +   + Y   A    +++    +        +      E + 
Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            +    R   E   E   +  ++ T   R ++     ++RV  +     +        G 
Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A    K   V L    ++     ++L     L
Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604
                K +  +   L  GR   Y +   G  R   +   R +  RE           VQ 
Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            + D++   M        + G  ++L VHDE++ E P       + L    M      A 
Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816

Query: 660 GLPLKAE 666
            +PL+ E
Sbjct: 817 -VPLEVE 822


>gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus]
          Length = 889

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 108/640 (16%), Positives = 183/640 (28%), Gaps = 147/640 (22%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           VEL D   +             +D     H +              I +        LA 
Sbjct: 368 VELGDLSAED---DKALAQWLASDTPKYFHEAK---AAFHMLAGRGIELAGIAHDTALAA 421

Query: 102 SNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               P            +   + +    E ++       +  L D               
Sbjct: 422 YLLRPGQRTYALADVYQRHLQKTLSAATEQLSLL----DNSSLVD---------QAAAIM 468

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                +T   +     E  +  E  L  +   +   G  VDV +  T       +  + +
Sbjct: 469 ELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 528

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +    L      +    ++L+T LF    L     T+T         ++L  +    F +
Sbjct: 529 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 588

Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + A R        L  L++ +  DGR+  T                             
Sbjct: 589 HLLAHRKYQKMKTTLEGLIKTVQPDGRIHTT----------------------------- 619

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390
              +Q +       +++P+   I         +RS  I  +G  +L+ AD + IE RV+A
Sbjct: 620 --FNQTVASTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMA 677

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++A++ GEDL+    +R F+V   QVT + R   K M   L Y   A    +
Sbjct: 678 HLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQ 737

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                                           +G      K   
Sbjct: 738 Q-----------------------------------------------LGIPAGEAKSIM 750

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                R   +   L +   Q  ++G       RR                 LP       
Sbjct: 751 ESYFERFGGVKKYLDEVVAQARKDGYTATLFGRRRY---------------LPE------ 789

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVL 626
                    LN+  R L RE      L   I Q  + DI+   M+   +A       ++L
Sbjct: 790 ---------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALQGMKSRVLL 838

Query: 627 TVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            VHDE+V E  P   +    +L   M S       +PL+ 
Sbjct: 839 QVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEV 876


>gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028]
          Length = 876

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 105/664 (15%), Positives = 201/664 (30%), Gaps = 147/664 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F  +     +     D    + L + LE+ + T + +++  +  V    
Sbjct: 328 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             ++I        ++LA     P  ++  V   + L  Q     K+ I  F KG+ H   
Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 439

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198
            +     H              VT T     E + + E L   E  L  +   + + G  
Sbjct: 440 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQNELLKDLELPLARILSEMEEIGIY 495

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            D+     +   +  +   L   +   + G   +    ++L   LF    L +   T+T 
Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554

Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 VL   +   P    +   R  A                               +
Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 583

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                        + +  R H   +Q +       + DP+   I         +R     
Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 642

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            S+   ++ AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R
Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y        +   + G+        +       ++  +    +    + 
Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 753

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A    ++ T                                        +RR +P +
Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
             +           + RS         R+ +NT                   +Q  + DI
Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662
           +   M+        TK    ++L VHDE++ E P ++ E  +  +  +M         +P
Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861

Query: 663 LKAE 666
           LK +
Sbjct: 862 LKVD 865


>gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
 gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 100/551 (18%), Positives = 171/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 78  GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 137

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    +V   +L QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 138 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 196

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + +  DG++      
Sbjct: 197 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 249

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 250 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 284

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 285 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 344

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +A+  G++       + T               
Sbjct: 345 VTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKKAKAYIDTYF------------- 388

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 389 -------------------------------ERFPGIKNYMEEVVREARDKGYVETLFKR 417

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 418 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 444

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 445 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAI 504

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 505 Q--LSVPLIAD 513


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 111/632 (17%), Positives = 198/632 (31%), Gaps = 123/632 (19%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+    +    +VAHN  F+ + L     LD+P   +  T + A   G   +LK +  A 
Sbjct: 408 LQPLFSDPQKAVVAHNGKFDMSALS-LIGLDVPHLSF-DTAIAAALLGKRQSLKDLAFAE 465

Query: 117 KLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              +      M   + LI    K  T + +          A      Y   DV +T  + 
Sbjct: 466 LRDADDRPIEMTRIETLIGTGKKQITMDQV----------AIEQVTPYASADVDMTARLL 515

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
               P               E  L  +   +   G  +D A      Q++     +++Q 
Sbjct: 516 ALFMPQLGAIPAVREVFEQIEMPLSPVLMRMEACGIGLDRAQLVQQGQVLGQSLREIEQH 575

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +     G   +      L   LF+   L   +         L      T     V++   
Sbjct: 576 IADF-VGEPLNINSRFDLNDLLFIRLKLPTAN---------LKRLAGTTRSGGAVYSVNA 625

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                        ++  +  G +   L++   S+               +  R H +  Q
Sbjct: 626 ETLED--------LQTHDQSGIVAMILRYRRLSKLKSTYVDALIELINQQTGRVHTQYRQ 677

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           I        +  P+   I         +R   +A  G  L+ AD + IE RVLA +  + 
Sbjct: 678 IGAETGRLSSDSPNLQNIPVRSEEGREIRRAFVARPGHVLMTADYSQIELRVLAHITADP 737

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++ F+TG+D++  T AR F++   +V+K+QR I K+    + Y   +     +A+ T 
Sbjct: 738 ALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIYGISSF---GLAARTA 794

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+      ++  N    ++   +++     E                             
Sbjct: 795 LSRTEAQQMI--NGLFAQYPGLKSYIERTLER---------------------------- 824

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                        + +   + +  R+R                  L  G     R     
Sbjct: 825 ------------VKAVGYVETLFGRRR--------------YFRELQDGGVTGPRRSAFE 858

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           R   N   +         G   + I  A+ R    E  + A      ++L VHDE+V E 
Sbjct: 859 REATNAGIQ---------GTAADLIKLAMIR---LEQALIAGGYQAKMLLQVHDELVLEV 906

Query: 637 PDTDEFNASML-YHLMTSN-PSWAKGLPLKAE 666
           P+ +    + L    MT   P  A  L +  E
Sbjct: 907 PEDERDAVAQLVCDTMTQVYPDLAVPLEVNVE 938


>gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
 gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
          Length = 888

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 103/643 (16%), Positives = 206/643 (32%), Gaps = 145/643 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103
            D + +      LK+ L++  V     N+  +   L     L IP+      L+LA    
Sbjct: 358 VDLLKEEP----LKDLLQSDSVKKNVFNAKAQIVGLHR---LGIPLENINFDLLLASYLL 410

Query: 104 ---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                 + L  V +       + +E  E+  +  K        D    +H        E 
Sbjct: 411 NTNDNSNDLGQVAQEHGYDDVRTDE--EVYGKGAK--RAVPDDDETFFSHLATKARAIEQ 466

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + D+    +  K+    +  E  L  +   +   G  VD      +   +    ++++ 
Sbjct: 467 LRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIES 526

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277
           ++     G   +    ++L   LF +  L +   T+T       VL      +P   Q+ 
Sbjct: 527 QIYQEA-GEEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQIL 585

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R  A   +   +  L++ ++S+                                + H 
Sbjct: 586 EYRQIAKLQSTY-ITGLLKVIHSND------------------------------QKIHT 614

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
              Q +T      + DP+   I         +R   + S EG ++  +D + +E RVLA 
Sbjct: 615 RYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAH 674

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQK 450
           + G++   + F+ GED++ +T  R F++AP  ++ ++ R   K +   + Y         
Sbjct: 675 ITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDY---G 731

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A    ++       ++  +   E+   + +         E+   +              
Sbjct: 732 LAQRIHVSRAEAHEFIQ--NYFHEFPGVKKYINDTIAFAKENGYVE-------------- 775

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                                       I  +RR +P ++ K           + RS   
Sbjct: 776 ---------------------------TITHRRRYLPDIHAKSF---------NKRSFA- 798

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDI 624
                 R+ +NT                   +Q  + DI+   M+              +
Sbjct: 799 -----ERTAMNTP------------------IQGSAADIIKIAMIRMQDELEKRHLKAKM 835

Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           +L +HDE+V E P  +    S L   +M S       +PLK +
Sbjct: 836 ILQIHDELVFEAPKEEIPVLSELVPKVMDSAVK--LDVPLKVD 876


>gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
 gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
          Length = 907

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 114/684 (16%), Positives = 210/684 (30%), Gaps = 171/684 (25%)

Query: 20  GICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAH 71
           G   Y E       D  V+  A+  +   +   D     ++   L +A L +  VT V  
Sbjct: 347 GYAIYLENLSKNYHDSEVVAVAW-TNGSEIFTGDA---RLLQADLFKAWLSDDQVTKVVF 402

Query: 72  NSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
           ++   + +L     +D    +   +    L  +    + L  V    +     +   + +
Sbjct: 403 DAKRTKVMLD-YLGIDFAGVVDDVLIGSYLLHARDNSNDLAEVAR--EFDMDDLSYDEAI 459

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181
             +  K         R  P   E      E+    V +   + + + P            
Sbjct: 460 YGKGAK---------RGVPEEAETM---YEHIARKVHIIARLQETIRPQLEANQMDDLYQ 507

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VD     T+          L+ ++     G   +    ++L
Sbjct: 508 KIELPLALVLANLEILGISVDKQQLVTMQAEFKEIIAGLEADIWKEA-GHEFNVNSPKQL 566

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF E GL +   T+T   T Q VL       P    + N R      +   +  L E
Sbjct: 567 GVILFEEMGLPVIKKTKTGYSTAQDVLEKLAGQAPIIDLILNYRQLNKLQSTY-VEGLQE 625

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++ D                                + H    Q +T      ++DP+ 
Sbjct: 626 FIHED-------------------------------GKIHSRFQQTLTSTGRLSSADPNL 654

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   + S E   +  +D + IE RVLA ++G++   +AF   ED++ 
Sbjct: 655 QNIPIRSEEGRSIRKAFVPSHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHT 714

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           +T  + +NV   +VT + R   K +   + Y        +  + +               
Sbjct: 715 STAMKVYNVPKEEVTSNMRRNAKAVNFGIVYGISDYGLSQNLNISR-------------- 760

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +A+NF     EN+P                             +   +    E+
Sbjct: 761 -----PEAKNFIDTYLENYP----------------------------GVQAYMKDVVEK 787

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTR 589
             E+G       RR                 LP  ++  +       R+ +NT       
Sbjct: 788 AKEDGYVETLFNRRRY---------------LPDLKAKNFNVRSFAERNAMNTP------ 826

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+   +A        +++L +HDE+V E P  +   
Sbjct: 827 ------------IQGTAADIIKIAMVKMDEALKEHKLKANLLLQIHDELVFEVPKDEIET 874

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAE 666
              L   +M S       +PL+ E
Sbjct: 875 LEKLVTEIMGSAAQ--LDVPLEIE 896


>gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
 gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 104/654 (15%), Positives = 197/654 (30%), Gaps = 138/654 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++ F    DD    +     D      L E LE+       +++            LDI 
Sbjct: 348 ILKFGLYTDD--THIVINAEDIKQHSDLIEWLEDAQTVKTVYDAKKTYVAAHR---LDIN 402

Query: 90  IHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           I      ++LA     P  A+  V   + L  Q     K+ ++ + KG+ H    D    
Sbjct: 403 IQNVQFDVMLASYIIDPSRAIDDVKSVVSLYGQ--NYVKDNVSIYGKGKKHHIPEDNILN 460

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            H  +        K  +    + + ++E L+  E  L  +   + + G   DV     + 
Sbjct: 461 EHVASITEAIASAKPLMEEQLKEYNQVELLADLELPLAKILSEMEEIGIYTDVNDLKHME 520

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265
             +  +   L + +     G   +    ++L   LF    L +   T+T       VL  
Sbjct: 521 NEIQEKLDVLIKNIHE-AAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQ 579

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K   P    +   R                                 S+          
Sbjct: 580 LKGEHPIIEHILEYRQL-------------------------------SKLQSTYVEGLQ 608

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVA 379
              + + +R H   +Q +       + DP+   I         +R      SE   ++ A
Sbjct: 609 K-VISKDNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPTSEDSVILSA 667

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +  ++   +AF  G D++  T  + FNV    V    R   K +   +
Sbjct: 668 DYSQIELRVLAHITQDESLKEAFIHGHDIHTATAMKVFNVEANDVDSLMRRQAKAVNFGI 727

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y        +   + G+        +       ++  +    +    +  + A    ++
Sbjct: 728 VYGISDYGLSQ---SLGITRKKAKAFID------DYLASFPGVKQYMSDIVKDAKAQGYV 778

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T                                        +RR +P +  +       
Sbjct: 779 ETLL-------------------------------------HRRRYIPDITSRNF----- 796

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617
               + RS         R+ +NT                   +Q  + DI+   M+    
Sbjct: 797 ----NLRSFA------ERTAMNTP------------------IQGSAADIIKLAMVKFNE 828

Query: 618 ----TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
               T     ++L VHDE++ E P ++ E  +  +  +M +       +PLK +
Sbjct: 829 KVKNTNYHAKLLLQVHDELIFELPKSEVEDFSEFVEEIMENALD--LDVPLKVD 880


>gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
 gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
          Length = 878

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 97/556 (17%), Positives = 166/556 (29%), Gaps = 148/556 (26%)

Query: 143 YDRNKPNHREAWRLFGEYCKGDVT--VTREIFKRLEPLSSK--------------EQELW 186
            DR  P   +  +     C  D +    R ++  L PL  +              E  L 
Sbjct: 424 LDRILPEEPKK-KKGEAVCNRDFSCAAVRTLYD-LYPLLDEKLKEASLDHLYEDLELPLA 481

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           Y    +   G  VD+     +          L+QE+ SL  G   +    ++L   LF +
Sbjct: 482 YTLARMERTGVAVDLQALDAMKTEFRERIGALEQEIYSLA-GEEFNLNSPKQLGQILFDK 540

Query: 247 TGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
            GL     T+T      +VL           ++   R    +     L  L + +N    
Sbjct: 541 LGLPALKKTKTGYSTDAKVLEELAPHHEVVAKILKYRTLI-KILTTYLEGLSKLVNE--- 596

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
                                      +  R H   +Q +T      +++P+   I    
Sbjct: 597 ---------------------------QTGRIHTHFNQTVTATGRLSSTEPNLQNIPIRL 629

Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                VR   +  + G  L+ AD + IE R+LA ++ +   + +F   ED++  T A  F
Sbjct: 630 EEGRRVRRAFVPGKKGNLLLSADYSQIELRILAHVSKDPVLIDSFRKEEDIHRRTAAEVF 689

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V P  VT + R   K +   + Y        +                         ++
Sbjct: 690 GVLPEDVTPELRDRAKAVNFGIVYGISDYGLSQQLKI-------------------PRQE 730

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           A+ +     E  P                             + + +H   E   +NG  
Sbjct: 731 AKEYISRYFERLP----------------------------GVRDFIHNVVEDAKKNGYV 762

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGK 596
                RR                 LP   +  +       R+ +NT              
Sbjct: 763 TTLLNRRRY---------------LPDINAKNFNQRSFAERTAMNTP------------- 794

Query: 597 LTENIVQAVSRDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDEFNASML-YHL 650
                +Q  + DI+   M+   +A        +VL VHD++V E  +    N + L    
Sbjct: 795 -----IQGTAADIIKLAMLRVEEALAGMDDVQMVLQVHDDLVFEVKEESLINVARLVKKQ 849

Query: 651 MTSNPSWAKGLPLKAE 666
           M S    A  +PL  +
Sbjct: 850 MESALELA--VPLTVD 863


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 104/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   ++         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129]
 gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae]
          Length = 899

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 87/486 (17%), Positives = 151/486 (31%), Gaps = 127/486 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G CVDVA       I   +  + +     L      +    ++L
Sbjct: 497 EMELPLVGVLARMEATGICVDVATLREQRDIFVEQVKEEESAARELAGDETLNLSSPKQL 556

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR---SAVLKLNTLVE 296
           +  LF   GL     T+T         + L  +    F + + A R        L+ L++
Sbjct: 557 QVVLFDTLGLPKTKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHREFQKMKTTLDGLIK 616

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A+  DGR+  T                                +Q +       +++P+ 
Sbjct: 617 AVGDDGRIHTT-------------------------------FNQTVASTGRLSSTEPNL 645

Query: 357 LQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +RS  +  +G K L+ AD + IE RV+A ++ +   ++A++TGEDL+ 
Sbjct: 646 QNIPVRTPAGRKIRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTGEDLHN 705

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              ++ F+V   QVT + R   K M   L Y   A    +                    
Sbjct: 706 FVGSKVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQ------------------- 746

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                       +       K        R   +   L Q  EQ
Sbjct: 747 ----------------------------LNIPAGEAKVIMESYFERFGGVKRYLDQVVEQ 778

Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
             ++G  + +  +RR +P              L S   +   +    R+ LN        
Sbjct: 779 ARKDGFTSTLFGRRRYLP-------------ELSSDNRVARENA--ERAALNAP------ 817

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+              ++L VHDE+V E    ++  
Sbjct: 818 ------------IQGTAADIIKIAMLRVDARLTAENCQSRVLLQVHDELVLEVASGEQEK 865

Query: 644 ASMLYH 649
              L  
Sbjct: 866 VQQLVE 871


>gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621]
 gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621]
          Length = 891

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 102/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L N ++     ++   R ++   +   + I      L++A     P+       
Sbjct: 370 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475

Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            LE L   EQ          L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 PGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   +   + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 104/690 (15%), Positives = 214/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                    +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   ++         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
 gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
          Length = 943

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/603 (17%), Positives = 187/603 (31%), Gaps = 102/603 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-------WDCVHDPVMPQVLK 58
           ID ET S             +     L    F   P E                + + LK
Sbjct: 373 IDTETTS------------LDTFQAELAGISFSLKPKEARFIYFGKGGLDIGNTL-ERLK 419

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALK 117
             LEN D+     N  ++  VLK   N  I +       +LA     P         A +
Sbjct: 420 PVLENPDIRKTGQNLKYDLLVLK---NYGISLTPVAFDTMLASYVLDPEEKHNLDDLAAR 476

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             S +     EL A   K  TH                   +Y   D  +   + +  E 
Sbjct: 477 HLSIRTTTFDELTAGEGKKRTH---------ILDVPSAQLSDYGCQDADIALRLQEVFEA 527

Query: 178 LSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              ++Q L +L +TI             +G  +D A       +V+ +   L +++ +  
Sbjct: 528 KLLEDQRLLHLCRTIEFPLVEVLAGMEYQGISIDTAHLEKTADLVNAQIGDLSRKIHA-A 586

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF   GL  +  T+T       VL     L P    +       
Sbjct: 587 AGTPFNLDSPKQLSGILFNTLGLPTKKTTKTGFSTNVEVLEELAPLHPIIGDLLE----- 641

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                     +    +         P    P   R H   +Q +
Sbjct: 642 --------------------------YRSLQKLKTTYIDALPKMINPGTGRLHTSFNQHV 675

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
           T      +S+P+   I         +R   I S     ++ AD + IE R+ A ++G++ 
Sbjct: 676 TATGRLSSSNPNLQNIPVRTTAGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDEK 735

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF   ED++  T    F+    ++T D R   K +   + Y         ++    +
Sbjct: 736 LIEAFRNREDIHRATAKVIFST--DEITSDMRRKAKEVNFGVLYGIQPY---GLSKRLNI 790

Query: 458 NLNTFAHLVKTN--SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             +    +++T     P  +               E      ++ T   R ++     +S
Sbjct: 791 PQSEAKAIIETYTTKYPGLFHALLEII--------EEGKRKGYVTTLLGR-RRYIPDLNS 841

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRR-DVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           R   +     +A   T   G A    K   ++    +KK+  N +++L     L++    
Sbjct: 842 RNGNIQKAAGRAAMNTPIQGTAADIIKCAMNLCDRQIKKNNMNSVMLLQVHDELLFETTA 901

Query: 575 NNR 577
             +
Sbjct: 902 EEK 904


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 107/608 (17%), Positives = 204/608 (33%), Gaps = 88/608 (14%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVL 57
           ID ET S        +  +     ++  +   D+         H+          + + L
Sbjct: 327 IDLETSS--------LDPHC--AKIVGVSISIDEGSGYYIPIAHESDGWQADRDYVLKNL 376

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEA 115
           K+ LE+    I+  N  F+ +VL       +         +LA     P A        A
Sbjct: 377 KKLLEDRSTKIIGQNLKFDYSVLAVNGIHPVVPD---FDTMLAAYLLSPDAKRFNLDELA 433

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +K    K  + ++L+        ++   D  K    EA R   E     + ++  + K++
Sbjct: 434 MKFLGYKTIKFEDLMK------KNQLGDDFTKVPLEEAARYSVEDADISLRLSSVLRKKI 487

Query: 176 EPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  L  +   +   G   DV     L++       K+ +EL  LT G 
Sbjct: 488 YEQELEEIFRKVELALIPVLADLELNGVYFDVPSLKNLSEKYGKILDKILEELFDLT-GE 546

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +     ++   LF   GL     T+    +T    L       P   ++         
Sbjct: 547 QFNPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSADALEEIADEHPAVQKLL-------- 598

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                   +    +         P        R H    Q  T 
Sbjct: 599 -----------------------DYRKYQKLKSTYLDSLPELVNKVTGRIHTSYHQTGTG 635

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                +S+P+   +         +R CVI  + G K+V AD + IE R+LA ++ ++  L
Sbjct: 636 TGRLSSSNPNMQNLPIRDEEGKEIRKCVIPQKKGWKIVSADYSQIELRILAHLSQDKQLL 695

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+  +D++  T +  + +  ++V+++QR IGK++  ++ Y   +     +AS   +  
Sbjct: 696 DAFKNDKDVHSLTASNLYGIKESEVSEEQRRIGKMINFSIIYGISSY---GLASRLRIPT 752

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           N    ++  ++  + + +   F R         A E  F+ T   R K+   Q  ++   
Sbjct: 753 NVAEEMI--SNYFKAFPEVRAFIRDTIS----EAKEKCFVRTMFGR-KREIPQFKTKNRN 805

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRS 578
           +  E  +    T   G A    K   + +  + K+K      +L     +VY        
Sbjct: 806 VIQEGERIAINTPIQGTAADIMKMAMIKIYNLLKEKEMESFAILQVHDEMVYEAPEKEIE 865

Query: 579 YLNTTTRQ 586
            L    ++
Sbjct: 866 KLKEILKE 873


>gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
 gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
          Length = 877

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L N ++     ++   R ++   +   + I      L++A     P+       
Sbjct: 356 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPGLEVVAEHVARKVHVLYDVKQT 461

Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            LE L   EQ          L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 462 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF +  L +   T+T       VL            + + R 
Sbjct: 522 LA-GTEFNINSPKQLGVILFEDLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 PGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   +   + A +  ++ T   R     R+   
Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 789 ERTAMNTP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVH 830

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 112/670 (16%), Positives = 217/670 (32%), Gaps = 157/670 (23%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +   +++      ++     +A  +  V I      F+R+ 
Sbjct: 325 FEILGDNYHTEPIIGFAWGNDK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           VL +   +D+P         LA+          +    +L +    E  E++        
Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192
           +     R  P          +  K      + + ++L        L   E  L  +   +
Sbjct: 430 YGKGAKRAVPEKEVLLSHLAKKVKVLQVAKQVMLEKLAEHGQSELLFDMELPLANVLAKM 489

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  V     + +     V   KL QE+  +  G   +    ++L   LF + GL LE
Sbjct: 490 EIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548

Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
               T+T     +   ++L P A  V                               L++
Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              ++             L    + H    Q +T      + DP+   I         +R
Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              + S E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T      + +     +
Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              +N    A +  ++ T                                        +R
Sbjct: 751 AYMDNVVREAKDKGYVETLF-------------------------------------HRR 773

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R++P +              + R+   R+    R+ +N+                   +Q
Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800

Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656
             + DIL   M+N  KA    GY   ++L VHDEIV E P+ +     +++   M +   
Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMKALVKETMEAAVE 860

Query: 657 WAKGLPLKAE 666
            A  +PL A+
Sbjct: 861 LA--VPLIAD 868


>gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/632 (16%), Positives = 200/632 (31%), Gaps = 140/632 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
           +    AL+N D     +++   + +      LDI I     C ++ +        +  V 
Sbjct: 353 ESFINALQNEDTKKYVYDAKETKVLFSR---LDIDIKGIEHCVMLASYLLDPALKIIDVA 409

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           ++ ++      E  E+I  F KG         N   H         E     +    E+ 
Sbjct: 410 QSAQMQGIYYVESDEMI--FGKGAKMHIPERTNLFKHIASEVNAIHEVSALQIRKLNELK 467

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           + LE L++ E  L  +   +  +G  V+      + Q +     +L   +     G   +
Sbjct: 468 Q-LELLTALELPLSLVLADMEMQGIKVNRQTLQEMQQEIQSRLDELITRIHEHA-GSTFN 525

Query: 233 SRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L   LF +  L      +T     T   VL S     P    +   R   S+  
Sbjct: 526 INSPKQLGVVLFEDLKLDSPKKKKTKTGYSTAVDVLESLAGKHPIIEDILLYRTL-SKLQ 584

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L + +  D ++                               H   +Q+I    
Sbjct: 585 STYVEGLQKLIGDDDKI-------------------------------HTRFNQVIAQTG 613

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R   + SE    +  AD + IE RVLA + G++  L+A
Sbjct: 614 RLSSIDPNLQNIPVRLDEGRKIRKAFVPSEPNSVIFAADYSQIELRVLAHITGDKGMLEA 673

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T  + FNV   +VT D R   K +   + Y        +   + G+    
Sbjct: 674 FNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKD 730

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +        + ++    +    +  + A +  ++ T                    
Sbjct: 731 AQAFIDN------YLESFPDVKAYMHDIIQEAKQQGYVTTLLN----------------- 767

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                               +RR +P +  +           + R          R+ +N
Sbjct: 768 --------------------RRRYIPDITSRNF---------NLRGFA------ERTAMN 792

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
           T                   +Q  + DI+   M++       T     ++L VHDE++ E
Sbjct: 793 TP------------------IQGSAADIIKLAMVHYNEQVKETDFKAKLLLQVHDELIFE 834

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            P  + E  +  + H+M +       +PL+ E
Sbjct: 835 VPKDELEAFSLFVKHVMENALE--LKVPLEVE 864


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
          Length = 879

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/622 (14%), Positives = 189/622 (30%), Gaps = 135/622 (21%)

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
           E+        +S      L     +++         +LA     P  +   V    K   
Sbjct: 365 EDESKKKWVFDSKRSVVAL-RWQGIEL--KGTEFDALLAAYIINPGNSYDDVASVAK--E 419

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
             +    +  A + KG  H    ++   +H           +  +    +   +LE    
Sbjct: 420 YGLNIVSKDEAVYGKGAKHAVPAEKELADHLARKAAAVNSLRDKLLHALKENNQLELYED 479

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L  +   +   G  VDV     + + +  +  + ++++  +  G   +    ++L 
Sbjct: 480 LELPLALILGEMESMGVKVDVERLKRMGEELRAKLKEYEEKIHDIA-GEPFNINSPKQLG 538

Query: 241 TWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL +   T+T       VL            +   R    +     +  L++ 
Sbjct: 539 VILFDKLGLPVVKKTKTGYSTSADVLEKLADKHDIVAYILQYRQ-IGKLQSTYIEGLLKV 597

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
              D                                + H   +Q +T      ++DP+  
Sbjct: 598 TRKD------------------------------SHKVHTRFNQALTQTGRLSSTDPNLQ 627

Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + SE    +  AD + IE RVLA ++ ++  ++AF    D++  
Sbjct: 628 NIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTK 687

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V+  +VT+  R   K +   + Y        +     G+        +     
Sbjct: 688 TAMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAGAFID---- 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              + ++    +   E   + A +  ++ T                              
Sbjct: 741 --RYLESFPGVKAYMEESVQEAKQKGYVTT------------------------------ 768

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  + ++RR +P +  +           + RS         R+ +NT         
Sbjct: 769 -------LMQRRRYIPELTSRNF---------NLRSFA------ERTAMNTP-------- 798

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M++             ++L VHDE++ E P  +     
Sbjct: 799 ----------IQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKILE 848

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            L   +M         +PLKA+
Sbjct: 849 KLVPEVMEHALD--LDVPLKAD 868


>gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
 gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
          Length = 889

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EPLSSKEQELWYLDQTINDR 195
              +  P                V     + ++L      + L   EQ L ++   +   
Sbjct: 443 GVKKAIPERETFLEHLARKVAVLVETEPVLLEKLCENGQLDLLYEMEQPLAFVLAKMEIA 502

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    ++   KL QE+  L  G   +    ++L   LF + GL +E   
Sbjct: 503 GIKVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGELLFEKLGLPIEYTK 561

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 614

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 615 -------------------------HTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKDAKAYIDTYF------------- 753

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKKLVKQTMEEAI 869

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 870 Q--LSVPLIAD 878


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 101/684 (14%), Positives = 212/684 (30%), Gaps = 158/684 (23%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----LKEA--LENT 64
            + ID     +  Y     +I  +  F +             +       +++   L  +
Sbjct: 342 YTSIDTETSSLDTY--TAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNNLFES 399

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           +  I+  N  F+  +LK      IP   +  T++ A      S +     A K    K  
Sbjct: 400 NPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKYLMHKNI 457

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--------- 175
           + +++I              +N      +  +   Y   D  +T  +F            
Sbjct: 458 KYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKKLKEDKL 504

Query: 176 -EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            + +   E     +   + + G  +D        + +  E   ++ E+   + G+  +  
Sbjct: 505 DKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK-SIGIDFNLN 563

Query: 235 CLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
             +++   LF +  L L +  +   T  +VL S ++       +   R  A   +    +
Sbjct: 564 SPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLKSTYT-D 622

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L+E +N                               + +R H    Q  T      + 
Sbjct: 623 NLIELINY------------------------------KTNRLHTSFIQTKTATGRITSI 652

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I         +R       G   + AD + IE  +LA ++ ++  +KAFE  +D
Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKD 712

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T ++ F +   ++T + R I K +   + Y+       ++A   G+          
Sbjct: 713 IHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--------- 760

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                   E+A+ F     +++                          ++ E        
Sbjct: 761 -------KEEAKGFINSYFDSY-------------------------PKIKEF------- 781

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                             +  +   ++         S   L  R      +  N   R  
Sbjct: 782 -----------------IINQINFVRNAGY------SETILKRRRYIKEINSNNYLERSA 818

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDE 641
                       +I+Q  + DI+   M+         K    I+L VHDE++ E+P  +E
Sbjct: 819 AERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEE 873

Query: 642 FNASMLYHLMTSNPSWAKGLPLKA 665
                +  +M    ++   LPL+A
Sbjct: 874 NEVKKILKIMMET-AYTLNLPLRA 896


>gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 972

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/560 (17%), Positives = 176/560 (31%), Gaps = 83/560 (14%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSNGL 105
                P   K +L       V HN+ F+  VL   F L    I     I TL+ A     
Sbjct: 446 SGSKQPDSAKRSL-------VFHNAKFDLHVLARTFGLTQKQIDSANIIDTLIAAWMLSP 498

Query: 106 PS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
               L    + ++L   +M   + LI R  K  T      ++            EY   D
Sbjct: 499 GQTGLGLDNQVMQLLQHEMIPIENLIGRGKKQITFNRTPIKD----------ATEYGAED 548

Query: 165 VTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
              T  ++  L     K          E  L  +   +   G  VD  +   L   ++  
Sbjct: 549 AVYTLRLWAPLRAKLQKYDYEKYFFSQEMPLLKVLYQMEGVGAFVDTKILKKLQTDLEHR 608

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN--KKLTPQ 272
             KL++E+  +  G   +    ++L   LF   GL  E    +T   VL     +   P 
Sbjct: 609 IEKLEKEICDMA-GCEFNIGSPKQLGEVLFDTLGLP-EIKKRSTDAAVLEELSFRSAHPI 666

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R                                  +       V P    P  
Sbjct: 667 VFAVIEYREL-------------------------------KKMQSTYVSVLPTLVNPDT 695

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEA 386
            R H    Q  T      + DP+   I     +   +R+  +       ++  D + IE 
Sbjct: 696 KRIHTSFIQWGTATGRLSSRDPNLQNIPVRSDLGKQIRAAFVPQNPNNVILAVDYSQIEL 755

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA ++G++  +++++ G D++  T A    V+   VT D R   KV+   + Y   A 
Sbjct: 756 RMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTADMRRDAKVVNFGVLYGMTAF 815

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++    + +      +        + +     +   ++    A  D ++ T   R 
Sbjct: 816 ---RLSRDLKIPMAQAKSFIDG------YFEMYQGVQKFIDDTKAAAHRDGYVETLSGR- 865

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSG 565
           ++      S          +    T   G A    K   + +     D+N  L +ML   
Sbjct: 866 RRYIAGIDSSDRMESQMAERMAVNTPVQGSAADLIKIAMIRIQKRINDENLPLRMMLQVH 925

Query: 566 RSLVYRDVGNNRSYLNTTTR 585
             LV+    +    L+   +
Sbjct: 926 DELVFECPKDQVEALSAMVK 945



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649
                VQ  + D++   M+              ++L VHDE+V E P    E  ++M+  
Sbjct: 887 AVNTPVQGSAADLIKIAMIRIQKRINDENLPLRMMLQVHDELVFECPKDQVEALSAMVKS 946

Query: 650 LMTSNPSWAKGLPLKA 665
            M         +PL A
Sbjct: 947 EMEGAME--LKVPLVA 960


>gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
 gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
          Length = 880

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 163/505 (32%), Gaps = 131/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +  RG  VDVA    +N ++     +L+ E+++L  G   +    ++L
Sbjct: 480 DMEFPLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLA-GQAFNPNSPKQL 538

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF   GL +   T+T   T   VL   K   P    +   R  A       L  L +
Sbjct: 539 GEILFERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQLAKLQGTY-LAGLPK 597

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            + +DG++                               H    Q +T      ++DP+ 
Sbjct: 598 FIQADGKI-------------------------------HTRFVQTLTQTGRLSSADPNL 626

Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   + SE G +L  AD + IE RVLA ++G+    +AF  G+D++ 
Sbjct: 627 QNIPIRMEEGRKIRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHA 686

Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  R F +A  + V  D R   K +   + Y        +      +        +   
Sbjct: 687 ATARRVFGLAEDEAVNSDMRRQAKAVNFGIVYGISDYGLSQ---NLDMPRKEAKAFID-- 741

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
               E+     F + +     +                         VS LW        
Sbjct: 742 RYLAEYPGISTFMQEIVAQAKKDG----------------------YVSTLW-------- 771

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                       +RR +P +Y             + RS         R+ +NT       
Sbjct: 772 -----------GRRRALPDIYSSNF---------NLRSFA------ERTAMNTP------ 799

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+   +A         ++L VHDE++ E P  +   
Sbjct: 800 ------------IQGTAADIIKVAMVALDQAIRQRDLQARLLLQVHDELILEAPQEEIAI 847

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEG 667
              L   +M    S    +PLK E 
Sbjct: 848 LEELVPEVMEGAVS--LSVPLKVEA 870


>gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 876

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 111/662 (16%), Positives = 206/662 (31%), Gaps = 143/662 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ FA  +D     + D       P+ L   LEN     + +++     V    
Sbjct: 328 YLKD-DILKFAL-YDGSNHVVIDADKVHDYPE-LIAWLENDKTEKIVYDAKKSYIVAHR- 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             LDI I   +  ++LA     P   +  V   +    Q     KE I  F KG+     
Sbjct: 384 --LDIAIKHIVFDVMLASYIIDPSRTIDDVNSVVSYFDQH--YVKESIEVFGKGKKRHVP 439

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            D    +H           K  +    E + +   L   E  L  +   + + G      
Sbjct: 440 EDEILDHHVGTIIEAINKTKPKMEAQLEEYNQTNLLDDLELPLARILSEMEETGIY---T 496

Query: 203 LAHTLNQIVDVERTKLDQELESL--TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
           +A  L ++    + KLD  + ++    G   +    ++L   LF    L +   T+T   
Sbjct: 497 VATDLQEMEKEIQAKLDVLINNIYNAAGESFNINSPKQLGVVLFETLELPVIKKTKTGYS 556

Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               VL   +   P                                +   L++   S+  
Sbjct: 557 TAVDVLEQLQGQHPI-------------------------------IDYILEYRTLSKLQ 585

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV-IAS 371
                      +   +R H   +Q +       + DP+   I         +R     + 
Sbjct: 586 STYVEGLQK-VISEDNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRRIRKAFKSSD 644

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +   +  AD + IE RVLA +  ++   +AF   ED++  T  + FNV P +V    R  
Sbjct: 645 DNNVIFSADYSQIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQ 704

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y        +   + G+        +       ++ D+    +   E+  +
Sbjct: 705 AKAVNFGIVYGISDYGLSQ---SLGITRKQAKQFID------DYLDSFPGVKQYMEDIVK 755

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                 ++ T                                        +RR +P +  
Sbjct: 756 DCKAQGYVETLL-------------------------------------HRRRYIPDITS 778

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
           +           + R          R+ +NT                   +Q  + DI+ 
Sbjct: 779 RNF---------NLRGFA------ERTAMNTP------------------IQGSAADIIK 805

Query: 612 EGMMN------ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLK 664
             M+N       T     ++L VHDE++ E P  + E  +  +  +M +  + A  +PLK
Sbjct: 806 LAMVNFVNEVKHTDFHAQLLLQVHDELIFELPKDEVEAFSEFIEEIMDN--ALALDVPLK 863

Query: 665 AE 666
            E
Sbjct: 864 VE 865


>gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
 gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
          Length = 857

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/498 (17%), Positives = 160/498 (32%), Gaps = 129/498 (25%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           + L+  +  E  L  +  ++   G   D        + +  +   L  ++  L  G   +
Sbjct: 451 EMLKLFNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEALTSQIYDLAGG-EFN 509

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF + GL  +  T++       VL       P    V   R     ++  
Sbjct: 510 IASPKQLGEVLFEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVGLVLEYRTLTKLNSTY 569

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +++L++ + +DGR+R   +                               Q  T     
Sbjct: 570 -VDSLLKEVEADGRVRSVFK-------------------------------QTETRTGRI 597

Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +++P+   I     I   +R   +A +G   + AD + IE RVLA + G++   K F  
Sbjct: 598 SSTEPNMQNIPVRKEIGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFAD 657

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T ++ F +    V  + R+  K +   + Y  GA +        G+++     
Sbjct: 658 GTDIHTMTASQVFGIPADAVLPEMRSAAKAVNFGIIYGIGAFSLS---KDIGVSVKEAKQ 714

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +                                         K +     +VSE    +
Sbjct: 715 YI-----------------------------------------KNYLDNFPKVSEF---M 730

Query: 525 HQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
            +  E  I+NG    I  +RR +P +                           R+ +N  
Sbjct: 731 DKTVEDGIKNGYVTTIFGRRRYIPELAATNK---------------VMQAFGKRAAMNAP 775

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET- 636
                             +Q  + DI+   M      + A K    ++L VHDE++ E  
Sbjct: 776 ------------------IQGAAADIIKMAMVKVYKRLKAEKLDARLILQVHDELIIEVT 817

Query: 637 PDTDEFNASMLYHLMTSN 654
           PD  E   ++L   M   
Sbjct: 818 PDDKEKAKAILKEEMEKA 835


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   K+         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896


>gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208]
          Length = 531

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           ++ T V +++      +     + + I      ++LA     PS         A++    
Sbjct: 19  SEQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 75

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 76  EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVAD----LEENEQLALMED 131

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 132 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 190

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 191 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 235

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 236 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 279

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 280 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 339

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 340 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 396

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 397 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 433

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 434 ----------------------------------RNFNVRGF-AERTAMNTP-------- 450

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+         K    ++L VHDE++ E P+ +     
Sbjct: 451 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 500

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 501 EIVPDVMENAVE--LSVPLKVD 520


>gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 201/664 (30%), Gaps = 147/664 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F  +     +     D    + L + LE+ + T + +++  +  V    
Sbjct: 328 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             ++I        ++LA     P  ++  V   + L  Q     K+ I  F KG+ H   
Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 439

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198
            +     H              VT T     E + ++E L   E  L  +   + + G  
Sbjct: 440 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            D+     +   +  +   L   +   + G   +    ++L   LF    L +   T+T 
Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554

Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 VL   +   P    +   R  A                               +
Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 583

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                        + +  R H   +Q +       + DP+   I         +R     
Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 642

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            S+   ++ AD + IE RVLA +  ++    AF    D++  T  + FNV   QV    R
Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMR 702

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y        +   + G+        +       ++  +    +    + 
Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 753

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A    ++ T                                        +RR +P +
Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
             +           + RS         R+ +NT                   +Q  + DI
Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662
           +   M+        TK    ++L VHDE++ E P ++ E  +  +  +M         +P
Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861

Query: 663 LKAE 666
           LK +
Sbjct: 862 LKVD 865


>gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
 gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
          Length = 891

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              KE L N ++     ++   R ++   +   + I      L++A     P+       
Sbjct: 370 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 426

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPGLEVVAEHVARKVHVLYDVKQT 475

Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            LE L   EQ          L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 476 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYK 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQ 594

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAKD 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 684 PGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   +   + A +  ++ T   R     R+   
Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M+       + G    ++L VH
Sbjct: 803 ERTAMNTP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVH 844

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P  +      L   +M      A  +PLK +
Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 151/500 (30%), Gaps = 128/500 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +  ++   G  VD      L+        KL++E+  L  G   +    ++L  
Sbjct: 459 EIPLIPVLYSMEKWGIKVDKEYLKQLSDEFCERIKKLEEEIYELA-GTRFNLNSPKQLSE 517

Query: 242 WLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF    L      +T       VL +     P   ++                      
Sbjct: 518 VLFERLKLPSGKKGKTGYSTSSSVLQNLINAHPIVRKIL--------------------- 556

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                     Q+    +         P    P+  R H + +   T      +S+P+   
Sbjct: 557 ----------QYRELYKLKSTYVDAIPNLVNPQTGRVHTKFNPTGTATGRISSSEPNLQN 606

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   ++ +G  LV  D + IE R++A ++ E   + AF+ GED++  T 
Sbjct: 607 IPIKSEEGRKIRRAFVSEDGYFLVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTA 666

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F V   +V    R+  K +   + Y   +    +  S T                  
Sbjct: 667 SEIFGVPEEEVDDLLRSRAKAVNFGIIYGISSFGLSETVSITP----------------- 709

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             E+AE F     +++P        +    ++     R+K                    
Sbjct: 710 --EEAEKFIDSYFKHYPR-------VKLFIDKTIHEAREKL------------------- 741

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             K +  RKR    +  + K   N                   R  +N            
Sbjct: 742 YVKTLFGRKRYIPEIKSINKQVRNAY----------------ERIAINAP---------- 775

Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646
                   +Q  + DI+   M+   K          I+L +HDE++ E P+ + EF   M
Sbjct: 776 --------IQGTAADIIKLAMIEIYKEIENKNLKSRILLQIHDELILEVPEEEMEFTPLM 827

Query: 647 LYHLMTSNPSWAKGLPLKAE 666
               M         +PL  E
Sbjct: 828 AKEKMEKVVE--LSVPLVVE 845


>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
          Length = 912

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/597 (17%), Positives = 194/597 (32%), Gaps = 88/597 (14%)

Query: 2   ATLFIDFETRSPIDLTK--CGIC---KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
               +D ET S   L     GI    K  E   + L A  ++  P +L D      M   
Sbjct: 334 NHFALDTETTSENPLKAKLVGISVSLKANEAFYIPL-AHKYEGVPKQL-DMNETLNM--- 388

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114
           LK   EN D+  +  N  ++  VLK      I I       ++A     P   A      
Sbjct: 389 LKGVFENPDIKKIGQNIKYDWIVLKRH---GIDIAGVYSDTMIASYLINPSKRAHNLDQI 445

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL     K    +E + +         +                 Y   D  +T      
Sbjct: 446 ALDFLGHKKITFEETVGKKKPESGFSNV----------PLEKAVSYACEDADITLMAHDV 495

Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L P            + E  L  +   +  +G CVD      L++  + +   L++ + S
Sbjct: 496 LFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSELSKHFEQQIEDLEENIYS 555

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNN 279
           +  G+  + +  ++L   LF +  L ++         +T   VL+   +       V  +
Sbjct: 556 VA-GMTFNIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVLTELAQNHELPALVLRH 614

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R  +   +    + L+E  +                              P   R H   
Sbjct: 615 RTLSKLKSTYT-DALLEIAD------------------------------PETERIHTSF 643

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q +T      +S+P+   I         +RS  +  +G KL+ AD + IE R+LA  A 
Sbjct: 644 NQTVTATGRLSSSNPNLQNIPVKTDEGREIRSAFVPKKGWKLLSADYSQIELRLLAHCAE 703

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF   ED++  T    F + P  +T + R   K +  ++ Y   A +       
Sbjct: 704 DEILINAFLEDEDIHTRTAIEIFQIFPEFITPELRYQAKTINFSIMYGISAFSLS---KD 760

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +  N+    +++ + F           A  +    T   R+ +      
Sbjct: 761 LGISQKMAQTYI--NNYFARYKEVKRFIDKTIS----DAHVNKKTSTLLGRI-RLLPDID 813

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVY 570
           S    +     +    T   G A    K   + +     + K    ++L     LV+
Sbjct: 814 SSNKIVIAAAERIAVNTPIQGTAADLIKIAMINIDKAFTEKKLKAAMLLSVHDELVF 870


>gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
 gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
          Length = 873

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/612 (15%), Positives = 178/612 (29%), Gaps = 146/612 (23%)

Query: 77  RTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKLSSQKMEEGK------EL 129
           R              +   + VL +        L+ V   + L++  +   +      EL
Sbjct: 370 RLAFSQLLEDSEVPKQVADSKVLYSLLLNEEIILRGVSLDIGLAAYLINPTRNKFEPLEL 429

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
           +  +  G               +    + E           +   L  +   E+ L  + 
Sbjct: 430 VKEYIPGAGEFANLAEEASALAQVADSYKE-----TLEELGLSALLHEM---EEPLSPIL 481

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  +G  VDV       + + VE  +L+QE+ +   G   +    ++L   LF + GL
Sbjct: 482 AEMEKQGIAVDVQRLQEFGRELTVELQRLEQEIYADA-GETFNINSPQQLGHILFEKLGL 540

Query: 250 HLEDLTETTCQRV---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+T        L   +       +V + R                          
Sbjct: 541 PPMKKTKTGYSTDADTLEELRDQHSIVERVLDYRQL------------------------ 576

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361
                  S+           Q      R H    Q +T      +++P+   I     + 
Sbjct: 577 -------SKLMSTYVNGLLAQIH--EGRVHTTFQQTVTATGRLSSTEPNLQNIPIRLELG 627

Query: 362 DCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R       EG  L+ AD + IE R+LA  + ++   ++F   +D++  T +  F + 
Sbjct: 628 RLLRKVFTPTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIP 687

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            A+VTKD R   K +   L Y         +    G+        ++T            
Sbjct: 688 MAEVTKDMRRKAKAVNFGLIYGLTDF---GLGRDLGVPRKEAKTYIETYFH--------- 735

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                                              R   +   L +   +  E G+    
Sbjct: 736 -----------------------------------RYEGVKRYLEEIVVKAKEEGQVRTL 760

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTE 599
             R               +  +P  R           R  +NT                 
Sbjct: 761 LNR---------------LRRIPELRHPNRVQRQFGERIAMNTP---------------- 789

Query: 600 NIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN 654
             +Q  + DI+   M+   +A      +++L VHDE+V E  P+  E  A ++   M S 
Sbjct: 790 --IQGTAADIMKLAMLGVAEALKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA 847

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 848 FP--LSVPLIAD 857


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 209/701 (29%), Gaps = 182/701 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             + ID ET S        +  Y       L                    +P   K   
Sbjct: 341 KYISIDTETSS--------LDTYTA----KLIGISISFKE------FEGCYIPIEAKGKI 382

Query: 59  -----------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
                        L  ++  I+  N  F+  +LK      IP   +  T++ A      S
Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            +     A K    K  + +++I              +N      +  +   Y   D  +
Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADI 487

Query: 168 TREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T  +F               +   E     +   + + G  +D        + +  E   
Sbjct: 488 TFRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEL 547

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQ 275
           ++ E+   + G+  +    +++   LF +  L L +  +   T  +VL S ++       
Sbjct: 548 IENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIEN 606

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R  A   +    + L+E +N                               + +R 
Sbjct: 607 LIKYRQIAKLKSTYT-DNLIELINY------------------------------KTNRL 635

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H    Q  T      + +P+   I         +R       G   + AD + IE  +LA
Sbjct: 636 HTSFIQTKTATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILA 695

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  +KAFE  +D++  T ++ F +   ++T + R I K +   + Y+       +
Sbjct: 696 HLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---R 752

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A   G+                  E+A+ F     +++                     
Sbjct: 753 LAKELGIT----------------KEEAKGFINSYFDSY--------------------- 775

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                ++ E                          +  +   K+         S   L  
Sbjct: 776 ----PKIKEF------------------------IINQINFVKNAGY------SETILKR 801

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624
           R      +  N   R              +I+Q  + DI+   M+         K    I
Sbjct: 802 RRYIKEINSNNYLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKI 856

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +L VHDE++ E+P  +E     +  +M    ++   LPL+A
Sbjct: 857 LLQVHDEMLIESPIEEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
 gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 880

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 101/616 (16%), Positives = 173/616 (28%), Gaps = 140/616 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           +D     H +              I +        LA     P          +  +   
Sbjct: 378 SDAPKYLHEAK---AAWHMLAGRGIELRGIAHDTALAAYLLRPG--------QRTYALTD 426

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L            + D N     +      E         +EI    E  +  E 
Sbjct: 427 VSQRHLQKSLGAATEQLSILDENP--LVDQAGAIMELAAELTAQLQEI-DSFELYTDLEL 483

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  VD  +  T       +  + ++    L      +    ++L+  L
Sbjct: 484 PLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVL 543

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNS 300
           F    +     T+T         ++L       F + + A R        L  L++ +  
Sbjct: 544 FDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTLEGLIKTIQP 603

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DGR+                               H   +Q +T      +++P+   I 
Sbjct: 604 DGRI-------------------------------HTTFNQTVTSTGRLSSTEPNLQNIP 632

Query: 361 -----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   +RS  +  EG   L+ AD + IE RV+A ++ +   ++A+  GEDL+    +
Sbjct: 633 VRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNYVGS 692

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F+V   +VT + R   K M   L Y   A    +     G+       +         
Sbjct: 693 KVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQ---QLGIPAREAKEI--------- 740

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                                    R   +   L +   Q  ++
Sbjct: 741 -----------------------------------MESYFERFGGVKRYLDEVVVQARKD 765

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G       RR                 LP                LN+  R + RE    
Sbjct: 766 GYTSTVFGRRRY---------------LPE---------------LNSDNR-VARENAER 794

Query: 595 GKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCET-PDTDEFNASMLYH 649
             L   I Q  + DI+   M+   KA       ++L VHDE+V E  P   E    +L  
Sbjct: 795 AALNAPI-QGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILER 853

Query: 650 LMTSNPSWAKGLPLKA 665
            M         +PL+ 
Sbjct: 854 EMDKAIE--LTVPLEV 867


>gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1]
          Length = 845

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 93/495 (18%), Positives = 172/495 (34%), Gaps = 133/495 (26%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY---GLVS 231
            E L   E  L  +  ++ D G C+D               T++ +E + + Y   G   
Sbjct: 441 TELLEKIELPLTEVLASMEDIGICIDKQGVEDFGT----YLTEMIEETQQMVYDDAGHSF 496

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L T LF E GL  +  T++       VL   +   P    V   R     ++ 
Sbjct: 497 NIASPKQLGTVLFEEMGLPAKKKTKSGYSTNAEVLEELRNDAPIVDNVLKFRQYTKLNST 556

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L++ +  DGR+                               H    Q  T    
Sbjct: 557 Y-VVGLLDKIADDGRI-------------------------------HTWFRQTETRTGR 584

Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +++P+   I     +   +R   +A +G+KLV AD + IE RV+A + G++  ++AF 
Sbjct: 585 ISSTEPNMQNIPVRTELGAQMRKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAFN 644

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +GED++ +T A+ F++    VT + R+  K +   + Y  GA +    A   G ++    
Sbjct: 645 SGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIGAFSL---AKDIGTSVAKAK 701

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +      +     E    +M E   ++A +D ++                        
Sbjct: 702 KYIN-----DYLAKYEKVNEFM-ETTVDNAFKDGYV------------------------ 731

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                          +  ++R +P              L S   ++       R  +NT 
Sbjct: 732 -------------TTMFGRKRRIP-------------ELSSSNKMM--QAAGKRIAMNTP 763

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637
                             VQ  + D++   M+N             ++L VHDE++ E  
Sbjct: 764 ------------------VQGTAADLIKIAMINVYNRLKAEDIDAKLILQVHDELILEAS 805

Query: 638 DTD-EFNASMLYHLM 651
           ++D E  A +L   M
Sbjct: 806 ESDAEHAAQLLKEEM 820


>gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51]
 gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 873

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/612 (15%), Positives = 178/612 (29%), Gaps = 146/612 (23%)

Query: 77  RTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKLSSQKMEEGK------EL 129
           R              +   + VL +        L+ V   + L++  +   +      EL
Sbjct: 370 RLAFSQLLEDSEVPKQVADSKVLYSLLLNEEIILRGVSLDIGLAAYLINPTRNKFEPLEL 429

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
           +  +  G               +    + E           +   L  +   E+ L  + 
Sbjct: 430 VKEYIPGAGEFANLAEEASALAQVADSYKE-----TLEELGLSALLHEM---EEPLSPIL 481

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  +G  VDV       + + VE  +L+QE+ +   G   +    ++L   LF + GL
Sbjct: 482 AEMEKQGIAVDVQRLQEFGRELTVELQRLEQEIYADA-GETFNINSPQQLGHILFEKLGL 540

Query: 250 HLEDLTETTCQRV---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+T        L   +       +V + R                          
Sbjct: 541 PPMKKTKTGYSTDADTLEELRDQHSIVERVLDYRQL------------------------ 576

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361
                  S+           Q      R H    Q +T      +++P+   I     + 
Sbjct: 577 -------SKLMSTYVNGLLAQIH--EGRVHTTFQQTVTATGRLSSTEPNLQNIPIRLELG 627

Query: 362 DCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R       EG  L+ AD + IE R+LA  + ++   ++F   +D++  T +  F + 
Sbjct: 628 RLLRKVFTPTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIP 687

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            A+VTKD R   K +   L Y         +    G+        ++T            
Sbjct: 688 MAEVTKDMRRKAKAVNFGLIYGLTDF---GLGRDLGVPRKEAKTYIETYFH--------- 735

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                                              R   +   L +   +  E G+    
Sbjct: 736 -----------------------------------RYEGVKRYLEEIVVKAKEEGQVRTL 760

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTE 599
             R               +  +P  R           R  +NT                 
Sbjct: 761 LNR---------------LRRIPELRHPNRVQRQFGERIAMNTP---------------- 789

Query: 600 NIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN 654
             +Q  + DI+   M+   +A      +++L VHDE+V E  P+  E  A ++   M S 
Sbjct: 790 --IQGTAADIMKLAMLGVAEALKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA 847

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 848 FP--LSVPLIAD 857


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/656 (16%), Positives = 204/656 (31%), Gaps = 154/656 (23%)

Query: 32  LFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
           + AF + +          D + +   P+   +  +N             R +L    N++
Sbjct: 344 IVAFAWGNAEKIYVSKNLDLLTEMKFPENTYDFKKN-------------RVLLSH-LNIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +P+       +LA+     +    +    +L         E I  F KG       D   
Sbjct: 390 LPL--VKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI--FGKGTKLALPDDEIL 445

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            +H           K  +       ++   LS  E  L  +   +   G  V       +
Sbjct: 446 FDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEI 505

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLS 264
               + +   L +E+  L  G   +    ++L   LF +  L +   T+T       VL 
Sbjct: 506 GAENEEKLALLTREIYELA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLE 564

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
               L+P   ++   R                                 ++         
Sbjct: 565 DLAALSPVVAKILEYRQ-------------------------------INKVQSTYVKGL 593

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379
            PQ +    + H    Q +T      + DP+   I         +R   + S+   L+ +
Sbjct: 594 IPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSS 652

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438
           D + IE RVLA ++ ++  + AF+ G D++ +T  R F +     VT + R   K +   
Sbjct: 653 DYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGIEKAEDVTANDRRNAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y         +A   G+      + ++T      + +     +   EN    A +  F
Sbjct: 713 VVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDKGF 763

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
           + T                                     ++ +RR +P +         
Sbjct: 764 VET-------------------------------------MSHRRRKIPDI--------- 777

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                + R+   R     R+ +N+                   +Q  + DIL   M+N  
Sbjct: 778 -----NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMINLD 813

Query: 619 KAG------YDIVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           KA         ++L VHDEI+ + P  + +E    ++   M      A  +PLK +
Sbjct: 814 KALTERQSKSKLLLQVHDEIILDVPLEELEEIQV-LVKETMEEAIELA--VPLKVD 866


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/678 (16%), Positives = 196/678 (28%), Gaps = 169/678 (24%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIV----AHNSYFERTVLKACFNLDIPIHRWICTLVL 99
           + +   D      ++       V       A+   FER V         P+  W+     
Sbjct: 344 VVEVTGDNPHDGEVR------GVAWWDGHTAYFIPFERLVQSDMR----PLADWLADARR 393

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-----HECLYDRNKPNHREAW 154
            +        +       L+ +       + A             +       P   EA 
Sbjct: 394 PKRTHDSHRAEVALFWHGLAFRGTSFCTHIAAYLLDPTESRHTLADLSRRYGLPPVPEAE 453

Query: 155 RLFGEYCK-----GDVTV-----TREIFKRLEPLSSK--------------EQELWYLDQ 190
            ++G+  K      D           +  RL PL                 E  L     
Sbjct: 454 DVYGKGAKFKVPDRDTLARYVGRKAALVARLVPLLEADLAACGMRSLFYDLELPLSSELA 513

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  VD A      + +     K+++E+  L  G   +    ++L   LF + GL 
Sbjct: 514 VMETVGVRVDAAALAAYGEELREAAAKVEREIYELA-GTTFNIGSTKQLGEILFDKLGLP 572

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           +   T+T         ++L P                    + +VE +         L +
Sbjct: 573 VVKKTKTGYSTDADVLEELAP-------------------YHPIVEKI---------LHY 604

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              ++           +  P+  + H    Q I       +  P+   I         +R
Sbjct: 605 RQLTKLQSTYIEGLLKEIRPQTGKIHTYYQQTIAATGRLSSQFPNLQNIPIRLEEGRKIR 664

Query: 366 SCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
              + SE G  ++ AD + IE RVLA ++G++   +AF TG D++  T    F V+  +V
Sbjct: 665 KAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSEDRV 724

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   K +   + Y         +A    ++    A  +                  
Sbjct: 725 DARMRRQAKAVNFGIIYGISDF---GLAQNLNISRKEAAEFI------------------ 763

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                     RQ  +  S +     +  EQ   +G       RR
Sbjct: 764 --------------------------RQYFAVFSGVKAYRERIVEQARRDGYVTTLLGRR 797

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                            LP   +  Y       R+ +NT                   +Q
Sbjct: 798 RY---------------LPDINASNYNLRSFAERTAMNTP------------------IQ 824

Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656
             + DI+   M+  T+          ++L VHDE+V E P  + +    ++  +M S   
Sbjct: 825 GTAADIIKTAMVRLTRRMRDVGLKSRMLLQVHDELVFEVPPDELDAMRELVTDVMESAVP 884

Query: 657 WAKGLPLKAE-GYESKRY 673
               +PLK +  + +  Y
Sbjct: 885 --LDVPLKVDVSWGADWY 900


>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1]
 gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1]
          Length = 908

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 110/650 (16%), Positives = 198/650 (30%), Gaps = 144/650 (22%)

Query: 39  DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
                  D    DP   + L   L +  V    H +      +         +       
Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAKL---AIHDLQGRGWTLAGVTSDT 423

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            LA     P        +  L    +   K  +      +    L D +     +A +  
Sbjct: 424 ALAAYLVRPGQ-----RSFALDDLSLRYLKRELRADNPEQQQLSLLDDSDGVDDQAVQTL 478

Query: 158 GEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  V +   + + L        L + E  +  +   +   G  VD+ +   L Q  
Sbjct: 479 LLRASAVVDLADALDEELSRIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGL-QSE 537

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             ++ +   E      G   +    ++L+  LF E  +     T+T       + + L  
Sbjct: 538 FADQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLFD 597

Query: 272 QAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           +    F   + A R A    + ++ L+ A+ SDGR+  T                     
Sbjct: 598 KTGHPFLQHLLAHRDATRLKVTVDGLLNAVASDGRIHTT--------------------- 636

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLA 382
                      +Q I       +++P+   I         +R   +  +G  +L+ AD +
Sbjct: 637 ----------FNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYGELMTADYS 686

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ ++  ++AF TGEDL+    +R+F+V   +VT + R   K M   L Y 
Sbjct: 687 QIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAYG 746

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             A    +    +                                               
Sbjct: 747 LSAYGLSQQLKIS----------------------------------------------- 759

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            E  K+   Q  +R   + + L    +Q  ++G       RR                 L
Sbjct: 760 TEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRY---------------L 804

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
           P   S                + +  RE      L   I Q  + DI+   M+N  +A  
Sbjct: 805 PELDS----------------SNRQVREAAERAALNAPI-QGSAADIIKVAMINVDQAIK 847

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
                   +L VHDE++ E  D +      L    M S  ++A  +PL+ 
Sbjct: 848 DAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGS--AYALDVPLEV 895


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFKSNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   K+         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896


>gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 894

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 102/626 (16%), Positives = 183/626 (29%), Gaps = 149/626 (23%)

Query: 76  ERTVLKACFNLDIPIHRWICTL-VLARSNGLPSALKAVGEALKLSSQKMEEGKE------ 128
           +   L A                 L         L  +     L++  +  G+       
Sbjct: 369 DERALSAWLADPAFPKAAHDVKGPLHAVRDRGWKLAGLSSDTALAAYLVRPGQRSFDLPD 428

Query: 129 -LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL-- 185
            ++    +    E   D  + +  E              V       L      E     
Sbjct: 429 LVVRYLQRELRAEQGEDDGQLSLLEDEEQTKAGAAASELVRARAVAELADTLDDELARID 488

Query: 186 ------------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                         +   +   G  VD      L         +  Q+   +  G   + 
Sbjct: 489 STRLLTELELPLLQVLSELEAAGIAVDADQLAGLGAHFAARVKQAAQDAYGVI-GKEINL 547

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LK 290
              ++L+  LF E G+     T+T       + + L  +    F   M   R A      
Sbjct: 548 GSPKQLQVVLFDELGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT 607

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ LV+++  DGR+                               H  L+Q I       
Sbjct: 608 VDGLVKSIADDGRI-------------------------------HTTLNQTIAATGRLS 636

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +++P+   I         +R   +  EG  +L+ AD + IE R++A ++G++  ++AF T
Sbjct: 637 STEPNLQNIPIRTEEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRT 696

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GEDL+    +R+F V   +V  + R   K M   L Y   A    +    +         
Sbjct: 697 GEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRIS--------- 747

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                  E  ++      +R   + + L
Sbjct: 748 --------------------------------------TEDAREQMEAYFARFGSVRDYL 769

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
               +Q  ++G       RR                 LP                LN+  
Sbjct: 770 RDVVDQARKDGYTSTILGRRRY---------------LP---------------DLNSDN 799

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD 640
           RQ  R+      L   I Q  + DI+   M++  +A       ++L VHDE++ E  D +
Sbjct: 800 RQ-RRDMAERMALNAPI-QGSAADIIKVAMLDVHEALRPLRSRMLLQVHDELIIEVADGE 857

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKA 665
                 L    M +  ++A  +PL+ 
Sbjct: 858 REEVERLVRERMGA--AYALDVPLEV 881


>gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
 gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 895

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 102/626 (16%), Positives = 183/626 (29%), Gaps = 149/626 (23%)

Query: 76  ERTVLKACFNLDIPIHRWICTL-VLARSNGLPSALKAVGEALKLSSQKMEEGKE------ 128
           +   L A                 L         L  +     L++  +  G+       
Sbjct: 370 DERALSAWLADPAFPKAAHDVKGPLHAVRDRGWKLAGLSSDTALAAYLVRPGQRSFDLPD 429

Query: 129 -LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL-- 185
            ++    +    E   D  + +  E              V       L      E     
Sbjct: 430 LVVRYLQRELRAEQGEDDGQLSLLEDEEQTKAGAAASELVRARAVAELADTLDDELARID 489

Query: 186 ------------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                         +   +   G  VD      L         +  Q+   +  G   + 
Sbjct: 490 STRLLTELELPLLQVLSELEAAGIAVDADQLAGLGAHFAARVKQAAQDAYGVI-GKEINL 548

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LK 290
              ++L+  LF E G+     T+T       + + L  +    F   M   R A      
Sbjct: 549 GSPKQLQVVLFDELGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT 608

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ LV+++  DGR+                               H  L+Q I       
Sbjct: 609 VDGLVKSIADDGRI-------------------------------HTTLNQTIAATGRLS 637

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +++P+   I         +R   +  EG  +L+ AD + IE R++A ++G++  ++AF T
Sbjct: 638 STEPNLQNIPIRTEEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRT 697

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GEDL+    +R+F V   +V  + R   K M   L Y   A    +    +         
Sbjct: 698 GEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRIS--------- 748

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                  E  ++      +R   + + L
Sbjct: 749 --------------------------------------TEDAREQMEAYFARFGSVRDYL 770

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
               +Q  ++G       RR                 LP                LN+  
Sbjct: 771 RDVVDQARKDGYTSTILGRRRY---------------LP---------------DLNSDN 800

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD 640
           RQ  R+      L   I Q  + DI+   M++  +A       ++L VHDE++ E  D +
Sbjct: 801 RQ-RRDMAERMALNAPI-QGSAADIIKVAMLDVHEALRPLRSRMLLQVHDELIIEVADGE 858

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKA 665
                 L    M +  ++A  +PL+ 
Sbjct: 859 REEVERLVRERMGA--AYALDVPLEV 882


>gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX]
 gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX]
          Length = 929

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/651 (16%), Positives = 184/651 (28%), Gaps = 141/651 (21%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFN 85
           D  +I  A           D        +    A L +     V H        L+A + 
Sbjct: 375 DGDIIRLALAVPSGRAVCLDPTQLDPADEAALTAWLADPAYPKVLHGVK---WALRALWA 431

Query: 86  LDIPIHRWICTLVLARSNGLPSA---------LKAVGEALKLSSQKMEEGKELIARFCKG 136
               +        +A     P           L+ +G  L   ++   EG +L       
Sbjct: 432 RGWTLDGVESDTAIAAYLLEPGRRNFELATLCLRYLGREL---TEHNAEGAQLTLDLEGT 488

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
              +    R          L        +       + L+ L + E  L  +   + D G
Sbjct: 489 GDDQDTARRELALRA----LATVELALALDAELTRREGLDLLHNLELPLAEVLARMEDAG 544

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
              D+     L         +   E   L  G   +    ++L+  LF E GL      +
Sbjct: 545 IAADLTYLRDLEAEFAAAVRQAVDEAHRL-VGREFNLGSPKQLQQILFDELGLPKTKRIK 603

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           T       +   L  Q        +   R                 +LR T++  G  +T
Sbjct: 604 TGYTTDADALAWLAAQTDNELPVILLRHRDQT--------------KLRTTVE--GLIKT 647

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                       +    R H    Q +T      +++P+   I         +R   +  
Sbjct: 648 ------------IAEDGRIHTTFHQTVTATGRLSSAEPNLQNIPVRTDAGRRIRRAFVVG 695

Query: 372 EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           EG + L+ AD + IE R++A ++ ++  ++AF +G D +    +R F +   QV  + RA
Sbjct: 696 EGYEQLLTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARA 755

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K M   L Y         +A   G++                                
Sbjct: 756 RIKAMNYGLAYGLSDY---GLAQQLGISPKEA---------------------------- 784

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                           +    +  S   ++ + L     +    G       RR      
Sbjct: 785 ----------------RVLMEEYFSHFGKVRDYLEAVVVRARREGYTATILGRRRY---- 824

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                      LP                LN+  RQ  RE      L   I Q  + DI+
Sbjct: 825 -----------LP---------------DLNSDNRQ-RREMAERMALNAPI-QGSAADII 856

Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN 654
              M+   +A         ++L VHDE+V E  P   +    ++   M+  
Sbjct: 857 KLAMLRVDRALRENGLASRMLLQVHDELVLEVAPGELDTVRELVVEHMSQA 907


>gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS]
 gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS]
          Length = 920

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 110/675 (16%), Positives = 201/675 (29%), Gaps = 149/675 (22%)

Query: 16  LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNS 73
           L   G    Y  D   +       D      D    DP     L   L +       H +
Sbjct: 357 LAVVGTHLAYDADATALAIVAADGDG--RYIDTTSLDPDDEAALASWLADPGPPKALHEA 414

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
                 +         +        LA     P        +  L    +   +  +   
Sbjct: 415 KL---AMHDLAGRGWKLAGVTSDTALAAYLVRPGQ-----RSFSLDDLSLRYLRRELRAD 466

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWY 187
              +    L D +     +A +         + +   + + L  + S       E  +  
Sbjct: 467 NPAQQQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQR 526

Query: 188 LDQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           +   +   G  VD+     L ++  D+ R   +     +  G   +    ++L+  LF E
Sbjct: 527 VLAEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVI--GKQINLGSPKQLQAVLFDE 584

Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGR 303
             +     T+T       + + L  +    F   + A R A    + ++ L+ ++ SDGR
Sbjct: 585 LEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGR 644

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +  T                                +Q I       +++P+   I    
Sbjct: 645 IHTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRT 673

Query: 361 --SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +  +G   ++ AD + IE R++A ++ +   ++AF TGEDL+    +R+F
Sbjct: 674 EAGRRIRDAFVVGDGYTEVMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAF 733

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           +V   +VT D R   K M   L Y   A     +A+   ++                   
Sbjct: 734 DVPIDEVTPDLRRRVKAMSYGLAYGLSAY---GLAAQLKISTEEA--------------- 775

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                        K    Q  +R   + + L    +Q  ++G  
Sbjct: 776 -----------------------------KVQMDQYFARFGGIRDYLRDVVDQARKDGYT 806

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                RR                 LP   S                     RE      L
Sbjct: 807 STVFGRRRY---------------LPELDSSNRN----------------VREAAERAAL 835

Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650
              I Q  + DI+   M++  +A         ++L VHDE++ E  D +      L    
Sbjct: 836 NAPI-QGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDK 894

Query: 651 MTSNPSWAKGLPLKA 665
           M S  ++A  +PL+ 
Sbjct: 895 MGS--AYALDVPLEV 907


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   ++         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
 gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
          Length = 933

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/637 (15%), Positives = 176/637 (27%), Gaps = 150/637 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+  LE+  +  VA ++     +L        P+           S      L  + +  
Sbjct: 411 LRPMLEDDSIMKVAQDAKAAMKLLGRHGIALAPVDDTHLLSYALNSGLHGHTLDTLSD-- 468

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +L   +  E K ++       T            R        Y   +  +   +++ L+
Sbjct: 469 RLLGHRPIELKSVVGTGKSART----------FDRVPVEAVTPYAAEEADIVLRLWQALK 518

Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               +          E+ L  +   +   G  VD      ++     +   L+ E+  L 
Sbjct: 519 QQLFRKQVTRVYETLERPLIPVLAGMERAGIRVDRDTLSRMSNAFSQKMAGLEAEVYELA 578

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   LF E GL      +T    T   VL           ++ + R  
Sbjct: 579 -GREFNLGSPKQLGEILFDELGLPGGKKGKTGAYGTGADVLEDLATEHDLPGRILDWRQ- 636

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          S+              P  SR H    Q 
Sbjct: 637 ------------------------------ISKLKSTYTDSLQGYIQPETSRVHTSYSQA 666

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                   +++P+   I         +R   +A  GK LV  D + IE R+LA +AG   
Sbjct: 667 GAATGRLASTEPNLQNIPVRTEEGRRIREAFVADLGKVLVSLDYSQIELRILAHVAGLDA 726

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF +G+D++  T +  FNV   ++T D R   K +   + Y        +       
Sbjct: 727 LREAFRSGQDIHAATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLAR------- 779

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                       S     E+A+ F     E  P                    R      
Sbjct: 780 ------------SLRIPREEAQGFINRYFERFP------------------GIRDYMDET 809

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                     F QT+   K          P     +                       R
Sbjct: 810 VAF--AKEHGFVQTLFGRKIHTPEINAKGPGAGFAR-----------------------R 844

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIV 633
           + +N                    +Q  + D++   M+            ++L VHDE++
Sbjct: 845 AAINAP------------------IQGTAADVIRRAMVRMPAAIEGLPATMLLQVHDELL 886

Query: 634 CETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667
            E  +   E   +    +M +   P     +PL  + 
Sbjct: 887 FEVEEGAVEALVAAAREVMEAAAMPVVQFTVPLVVDA 923


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/586 (15%), Positives = 201/586 (34%), Gaps = 84/586 (14%)

Query: 27  DVCVILFAFGFDDHPVELWDCV--HDPVMP--QVLKEALENTDVTIVAHNSYFERTVLKA 82
              ++  AF   +              ++P  Q+ KE  E+  +  V  N  ++  VLK 
Sbjct: 371 SAELVGIAFTLQEGEAYFLPFFGRKRDIIPTVQLFKEIFESDTILKVGQNLKYDINVLKK 430

Query: 83  C-FNLDIPIHRWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHE 140
               ++ PI      +++A     P  L  +   A    + ++   +ELI      +   
Sbjct: 431 YGIRMNYPI----FDILIAHYLINPEYLHNLDFLAKTYLNYRIINTEELIG----SKKES 482

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQ 190
            L  R  P       L  +Y   +  +  ++    EP+  K          E  L ++  
Sbjct: 483 QLSVRQVP-----LSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVFVLS 537

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL- 249
            + + G  +D++     + +++     +++ +  ++ G + +    + +   LF    + 
Sbjct: 538 DMEEFGVKLDISALKDYSVVLNRYLESIEKIIFQIS-GKIFNVNSPKMVGEILFDHLKII 596

Query: 250 ----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
                 +     T + +L + KK  P   ++   R ++ +     ++TL   ++   +  
Sbjct: 597 ENSKKTKSGQYATSEGILENLKKKHPIVGEILKYR-KSKKLLTTYIDTLPTLVSFIDK-- 653

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                                       + H   +Q  T      ++ P+   I      
Sbjct: 654 ----------------------------KIHTTYNQATTATGRLSSNSPNLQNIPIRDKE 685

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   I  +    + AD + IE R++A ++ ++  L+AF  G+D++    +  F V 
Sbjct: 686 GKEIRRVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVP 745

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            A++T D R   K+    + Y         +A    ++      L+  N     + D +N
Sbjct: 746 LAEITCDMRRKAKITNFGIIYGISVF---GLAEQLQVSRFIAKELI--NKYFMIFPDIKN 800

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +           A +D ++ T   R K+     +SR S +     +        G A   
Sbjct: 801 YIDRSIAI----ARKDGYVETIFRR-KRFLPDINSRNSVVRKYAERNSINAPIQGSAADI 855

Query: 541 RKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLNTTT 584
            K   +  ++ +   N+L   +++     L +    +    +    
Sbjct: 856 IK-VAMNRIHRRLIDNDLQSKMIIQVHDELNFNVFIDELDKVKQIV 900


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/497 (18%), Positives = 169/497 (34%), Gaps = 69/497 (13%)

Query: 44  LWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           +     +  +P+      L+    +     VAHN+ F+  VL+      +P+       +
Sbjct: 421 VGHTTGEMQLPRDRVIAALRSFFADPARPKVAHNAKFDIEVLERA---GMPVAGLSFDTM 477

Query: 99  LAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           LA         LK +       ++ ++   +LI +     T                   
Sbjct: 478 LAAGLLDKRRNLKDLAFYELELAEPLDAIGDLIGKGKNQVT----------FAEVPIARA 527

Query: 158 GEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHT 206
             Y   D  +T  +   LE                E  L  +   +   G  +DV     
Sbjct: 528 TRYAAADADMTLRLQPALEAKLRAAGSLADMFYRLEMPLVPVLVRMEQSGILLDVPYMRA 587

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L + +  E  +++Q++ ++  G   +    ++L   LF        +L  T  +R  +  
Sbjct: 588 LGERMGRELAQIEQQIFAIA-GKPFNINSGDQLSEVLFG----PKINLPTTGLERTRTGR 642

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
             LT QA++                    +A ++ G +   L+    S+         P 
Sbjct: 643 YSLTAQALEEL------------------QASDTTGIIELILRHRRLSKLKSTYVDELPA 684

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
              P   R H + +Q+        ++ P+   I         VR   IA+ G  L+ AD 
Sbjct: 685 LVNPETGRVHTDYNQLGAATGRLSSNSPNLQNIPTRTEEGREVRRGFIAAPGHVLIAADY 744

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA + G+   ++ F  G D++  T AR F V    V K+QR I K +   + Y
Sbjct: 745 SQIELRVLAHITGDPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIY 804

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                    +A   G++     +L+ +        +     R   +   E    + ++ +
Sbjct: 805 GISPF---GLAQRLGISREQARNLIDS------LFNQFPRIRDYIDRTLETGRNEGYVQS 855

Query: 502 ACERVKKAW--RQKHSR 516
              R +  +  R    R
Sbjct: 856 LFGRRRPMFDLRTSGPR 872



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 17/141 (12%)

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTRQLTREYTYGGKL 597
           AR   D       + ++ +   L +GR+  Y     G  R   +  T    R+     + 
Sbjct: 822 ARNLIDSLFNQFPRIRDYIDRTLETGRNEGYVQSLFGRRRPMFDLRTSGPRRQAAER-EA 880

Query: 598 TENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASMLYHL 650
             + +Q+ + DI+   M+              ++L VHDE++ E P+ + +   +++   
Sbjct: 881 INHPIQSTAADIMKLAMIAVDAELRRRRLRTRMLLQVHDELIFEAPEAEVDEVVALVRER 940

Query: 651 MTSN-----PSWAKGLPLKAE 666
           M        P +A  +PL+ E
Sbjct: 941 MEGVLSDMHPPFA--VPLRVE 959


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   ++         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896


>gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273]
 gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273]
          Length = 891

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 200/632 (31%), Gaps = 153/632 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L N ++     ++   R ++   +   + I      L++A     P+       A+    
Sbjct: 376 LANAEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFRAVA--- 429

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175
            KM+E   +       ++ E +Y +          +  E+    V V  ++ +       
Sbjct: 430 -KMKETHAV-------KSDEEVYGKGAKRAVPELDVVAEHVARKVHVLYDVKQTFIEELK 481

Query: 176 -----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                E  +  E  L  +   +  +G  VD      + + +     +++QE+  L  G  
Sbjct: 482 KNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLA-GTE 540

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF    L +   T+T       VL            + + R    +  
Sbjct: 541 FNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQL-GKLN 599

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ ++ D                               S+ H   +Q++T   
Sbjct: 600 STYIEGLLKVVHED------------------------------SSKIHTRFNQVLTQTG 629

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +   ++A
Sbjct: 630 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEA 689

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+   D++  T    F V   +VT + R   K +   + Y        +     G+    
Sbjct: 690 FQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKA 746

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +      E++ ++    +   +   + A +  ++ T   R     R+    ++   
Sbjct: 747 AAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIPEITS-- 793

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                                       R+   R     R+ +N
Sbjct: 794 --------------------------------------------RNFNLRSF-AERTAMN 808

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCE 635
           T                   +Q  + DI+ + M+       + G    ++L VHDE++ E
Sbjct: 809 TP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFE 850

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
            P  +      L   +M      A  +PLK +
Sbjct: 851 APKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
            Chicago]
          Length = 1015

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/646 (15%), Positives = 189/646 (29%), Gaps = 155/646 (23%)

Query: 46   DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
            D  +   +   L+    +  +T+V HN  F+  V+      +        T+V A     
Sbjct: 485  DPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDP 544

Query: 106  PSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                      A      +    +E++A             + +      +     Y   D
Sbjct: 545  DRGTYGMDVLAASFFQIRTITFEEVVA-------------KGQTFAHVPYECAVRYAAED 591

Query: 165  VTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
              +T  ++  L+               E  L  +   + + G  +   +   L +     
Sbjct: 592  ADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDL 651

Query: 215  RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271
              + + ++ SL  G   +    ++L+T LF E  L               VL    +  P
Sbjct: 652  IQQYEHDIFSLA-GHEFNIGSPKQLQTVLFQELHLPPGKKNTQGYSTDHSVLKKLARKHP 710

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             A ++   R   S+       +L +  +  GR+                           
Sbjct: 711  IAEKILLFR-DLSKLRSTYTESLAKLADQTGRV--------------------------- 742

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
                H    QI T      + +P+   I         +R    A+ G +L+ AD   IE 
Sbjct: 743  ----HTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIEL 798

Query: 387  RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
             VLA ++ ++  L AF    D++  T A  FNV+   V    R I K +   + Y   A 
Sbjct: 799  VVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAF 858

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +++    ++       +                                        
Sbjct: 859  ---RLSDELKISQKEAQSFIY--------------------------------------- 876

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + + +  V     ++    EQT + G    +A +RR +  +  +             
Sbjct: 877  --RYFETYPGVYAFSTQV---AEQTRKTGYVTSLAGRRRYIRTIDSRNT----------- 920

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-- 623
                       R  LNT                   +Q+ + DI+   M+   +A     
Sbjct: 921  ----LERARAERMALNTQ------------------IQSSAADIVKIAMIAIQRAFARRP 958

Query: 624  ----IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
                ++L VHDE++ E P  +      +    M         +PL+
Sbjct: 959  LRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LSIPLR 1002


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/686 (16%), Positives = 211/686 (30%), Gaps = 167/686 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-LKEALENT-DVT 67
           D    G+  Y E+  ++ F+F F++         H        + Q   K A++   +  
Sbjct: 337 DTETTGLD-Y-ENDSLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQEDAKIAIKKIFNSR 394

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           +V HN  F+   +         +  +  +++LA      SAL     + KL   KM   K
Sbjct: 395 VVGHNIKFDLHFVIRFLGEG-ELDIFADSMILAWLINPESALSLDKLSEKLLEHKMITFK 453

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
           E +              + +     A      Y   D  +T  ++     +         
Sbjct: 454 ESVK-------------KGETFASVALEEACNYAAEDAYITLRLYYLFLEMLKDQGAEHL 500

Query: 180 ---SKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              +KE E  ++     +   G  ++               ++L +++  L   L  +  
Sbjct: 501 IEEAKEVEFPFIKTLLKMEMHGIELNSLFLEQFLAEAKDSLSELTKKIYELAS-LEFNIN 559

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF + GL     T+T     ++VL+S          +   R    +     +
Sbjct: 560 STQQLGNVLFEQLGLPTSKKTKTGYSTDEKVLNSLLGEHEIIPYLLEYR-EVYKLYSTYI 618

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++    D                             + SR H    Q  T      +
Sbjct: 619 EPLLKLSQQD-----------------------------KESRIHTSFVQTGTTTGRLSS 649

Query: 352 SDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            +P+   I +       +R   +A EGKKL+  D + IE R+LA    ++  ++AF   +
Sbjct: 650 KNPNLQNIPTRTALGTKIREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFMQDK 709

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D+++ T    F     +    +R + K +   L Y              G+     +  +
Sbjct: 710 DIHMQTAIALFG---EEDAPLKRNVAKTVNFGLLY--------------GMGQKKLSETL 752

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           K  +A     +A+        + P               VK  +R               
Sbjct: 753 KITTA-----EAKEIIERYFSSFP--------------SVKSYFRSI------------- 780

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                                 V   K+   +  +L              R Y +  +  
Sbjct: 781 ----------------------VDFSKEAGYVETLL------------KRRRYFDYESAS 806

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640
                 Y  +   +I Q  + DI+   M          K    ++L +HDE++ E   ++
Sbjct: 807 PMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIEDEKLNAKMLLQIHDELIFEVDTSE 866

Query: 641 -EFNASMLYHLMTSNPSWAKGLPLKA 665
            E       ++M  N      +PLKA
Sbjct: 867 AEILGEKFKNIM-QNIMP-LNIPLKA 890


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/646 (15%), Positives = 189/646 (29%), Gaps = 155/646 (23%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D  +   +   L+    +  +T+V HN  F+  V+      +        T+V A     
Sbjct: 467 DPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDP 526

Query: 106 PSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                     A      +    +E++A             + +      +     Y   D
Sbjct: 527 DRGTYGMDVLAASFFQIRTITFEEVVA-------------KGQTFAHVPYECAVRYAAED 573

Query: 165 VTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             +T  ++  L+               E  L  +   + + G  +   +   L +     
Sbjct: 574 ADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDL 633

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271
             + + ++ SL  G   +    ++L+T LF E  L               VL    +  P
Sbjct: 634 IQQYEHDIFSLA-GHEFNIGSPKQLQTVLFQELHLPPGKKNTQGYSTDHSVLKKLARKHP 692

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A ++   R   S+       +L +  +  GR+                           
Sbjct: 693 IAEKILLFR-DLSKLRSTYTESLAKLADQTGRV--------------------------- 724

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
               H    QI T      + +P+   I         +R    A+ G +L+ AD   IE 
Sbjct: 725 ----HTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIEL 780

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
            VLA ++ ++  L AF    D++  T A  FNV+   V    R I K +   + Y   A 
Sbjct: 781 VVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAF 840

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++    ++       +                                        
Sbjct: 841 ---RLSDELKISQKEAQSFIY--------------------------------------- 858

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
              + + +  V     ++    EQT + G    +A +RR +  +  +             
Sbjct: 859 --RYFETYPGVYAFSTQV---AEQTRKTGYVTSLAGRRRYIRTIDSRNT----------- 902

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-- 623
                      R  LNT                   +Q+ + DI+   M+   +A     
Sbjct: 903 ----LERARAERMALNTQ------------------IQSSAADIVKIAMIAIQRAFARRP 940

Query: 624 ----IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
               ++L VHDE++ E P  +      +    M         +PL+
Sbjct: 941 LRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LSIPLR 984


>gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 240

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 118/286 (41%), Gaps = 59/286 (20%)

Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458
           F+ GEDLY  T +  F V   +  V  + R  GK+  LA GY G   A + M +   GL+
Sbjct: 1   FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLS 60

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +                                             +  AWR  +  + 
Sbjct: 61  KDELQ-----------------------------------------PIVDAWRAANPNIV 79

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
           +LW+++  A  + I  G  +  R       +  +K    L + LPSGR L Y    +G N
Sbjct: 80  QLWHDVDNAATRAISTGSPVTLRN------LGFEKKSGMLFINLPSGRRLAYVKPGIGMN 133

Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R    + T       R+  +  TYGGKL ENIVQA +RD+L E +     AG  IV+ +H
Sbjct: 134 RFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIH 193

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DE+V + P       + +  L+   P    GLP+ A GYE   Y+K
Sbjct: 194 DEVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   ++         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1]
 gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1]
          Length = 965

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/610 (18%), Positives = 201/610 (32%), Gaps = 87/610 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMPQV-----LKEALENT 64
           D    G     +D    L        P     V L     +  +P+      L+    + 
Sbjct: 383 DTETRGTNPLRDD----LVGIALATIPGSGWYVPLGHTTGEAQLPRERVIAALRPFFADP 438

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA-LKLSSQK 122
             + +AHN+ F+  VL+      IP+       +LA +       LK +    L L++  
Sbjct: 439 ARSRIAHNAKFDIEVLERA---GIPVAGVAFDTMLAAALLDKRRNLKDLAFYELNLAAP- 494

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
           +E  + LI +     T                     Y   D  +T  +   LE      
Sbjct: 495 LESIEALIGKGKNQVT----------FADVPIARATPYAAADADMTLRLKPALEAKLRAA 544

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   +   G  +DV     L + +  E  +++Q++ ++  G   
Sbjct: 545 GSVADVFYRLEMPLVPVLVRMEQAGILLDVPYMRALGERMGRELEQIEQQIYAIA-GQTF 603

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L   LF        +L  T   R  +    LT QA++                
Sbjct: 604 NINSGDQLSEVLFG----PKINLPTTGLDRTRTGRYSLTAQALEEL-------------- 645

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
               +A ++ G +   L+    S+         P    P   R H + +Q+        +
Sbjct: 646 ----QASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAATGRLSS 701

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           + P+   I         VR   IA+ G  L+ AD + IE RVLA M G+   ++ F  G 
Sbjct: 702 NSPNLQNIPTRTEEGREVRRGFIAAPGHLLIAADYSQIELRVLAHMTGDPNLIQTFIEGR 761

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T AR F V  + V K+QR I K +   + Y         +A   G++      L+
Sbjct: 762 DIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIYGISPF---GLAQRLGISREQARGLI 818

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW--RQKHSRVSELWNEL 524
            +        D     R   +   +    + ++ +   R +  +  R    R        
Sbjct: 819 DS------LFDQFPRIRDYIDRTLDIGRSEGYVQSLFGRRRPMFDLRVSGPRRQA---AE 869

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A    I++  A I +         +++ +    ++L     L++              
Sbjct: 870 REAINHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIF----EAPEAEVDDV 925

Query: 585 RQLTREYTYG 594
             L RE   G
Sbjct: 926 VALVRERMEG 935



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 17/141 (12%)

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTRQLTREYTYGGKL 597
           AR   D       + ++ +   L  GRS  Y     G  R   +       R+     + 
Sbjct: 814 ARGLIDSLFDQFPRIRDYIDRTLDIGRSEGYVQSLFGRRRPMFDLRVSGPRRQAAER-EA 872

Query: 598 TENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHL 650
             + +Q+ + DI+   M+              ++L VHDE++ E P+ + +   +++   
Sbjct: 873 INHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIFEAPEAEVDDVVALVRER 932

Query: 651 MTSN-----PSWAKGLPLKAE 666
           M        P +A  +PL+ E
Sbjct: 933 MEGVLHGMEPPFA--VPLRVE 951


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   K+         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   K+         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896


>gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
          Length = 867

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/631 (17%), Positives = 200/631 (31%), Gaps = 141/631 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKA 111
           +     L++       ++      +      ++I  + +   L LA     P+    LK 
Sbjct: 350 ESFLAYLKDETKKKYGYDIK-SAVIGSRWNGVEI--NGYTFDLSLASYVLEPAIKEELKY 406

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           V         + +E       F KG       D     H  +        K  VT   + 
Sbjct: 407 VCTHFDYDGVQYDE-----EVFGKGAKKHIPDDALLAQHTVSKAKAIYELKDVVTKELKD 461

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            K+ E     E  +  +   +   G  +D+ +   +++  D    KL  ++  ++ G   
Sbjct: 462 KKQYELYEDIELPVTRILGEMEFAGTEIDLDVLKEMDEAFDETIEKLSNDIYRIS-GTTF 520

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF + GL     T+T     Q VL       P    V   RM       
Sbjct: 521 NISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQDVLEKIIDAHPVVPLVLEYRML------ 574

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                    ++           Q  P   + H    Q +TH   
Sbjct: 575 -------------------------TKLSSTYLKGLQEQVFPDN-KIHTIYKQTLTHTGR 608

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             + DP+   I         +R   ++  G  LV  D + IE R+LA MA     + AF 
Sbjct: 609 LSSVDPNLQNIPVRSEEGKLIRKAFVSHNGY-LVSFDYSQIELRILAHMAHVTNLIDAFN 667

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T A  F V   +VT   R+  K +   + Y        +++   G+++    
Sbjct: 668 QGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNFGIIYGMSEF---RLSKDIGMSI---- 720

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                        +A NF     E +PE       + T  + V +  ++           
Sbjct: 721 ------------AEARNFINKYFETYPE-------VKTYMDEVVEVCKK----------- 750

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                    +   + +  ++R +P +    DKN ++                 R  +NT 
Sbjct: 751 ---------QGYVSTLLNRKRYIPTI---NDKNFMVRQ------------QAQRYAMNTP 786

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637
                             +Q    DIL   M+   KA         ++L VHDE++ +  
Sbjct: 787 ------------------IQGTGADILKLAMIEVDKALKVHHLKSQMILQVHDELIFDVF 828

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + + E   S++   M +       +PL  EG
Sbjct: 829 EDELEEVMSLVKEKMENCIK--MDVPLIVEG 857


>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
 gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
          Length = 913

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/520 (18%), Positives = 169/520 (32%), Gaps = 80/520 (15%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D PV+      D V+   LK  LE+ +   V  +  ++  VL         I     TL+
Sbjct: 377 DAPVQ---LPRDEVL-ARLKPWLESAEHKKVGQHLKYDEQVLANYGIEMRGIE--HDTLL 430

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            +              AL+    K  + +E+  +                    A     
Sbjct: 431 QSYVVESHRTHDMDSLALRHLGVKTIKYEEVAGKGAGQ----------IGFDEVALDKAA 480

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207
           EY   D  +T  + + L P  + E+ L Y+ + I              G  +D       
Sbjct: 481 EYAAEDADITLRLHQALYPQVTAEKTLEYVYRAIELPTSRVLRKMERTGVLIDAEKLRLQ 540

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263
           +  +     +L+ E   L  G   +    +++    F +  L +         +T + VL
Sbjct: 541 SSEIATRLIQLESEAYVLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVL 599

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               +  P    +  +R                               G S+        
Sbjct: 600 QKLAEDYPLPKILLEHR-------------------------------GLSKLKSTYTDK 628

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378
            P        R H    Q +       ++DP+   I         +R   IA  G KLV 
Sbjct: 629 LPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  L+AF  GED++  T A  F+V P +V+ DQR + KV+   
Sbjct: 689 ADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFG 748

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y   +     +A+  G+  +     +        +       R+M E     A    +
Sbjct: 749 LIYGMSSF---GLAANLGITRDAAKLYID-----RYFARYPGVARYMDETRV-SAKAKGY 799

Query: 499 IGTACERVKKAW-RQKHSRVSELWNELHQAFEQTIENGKA 537
           + T   R  + W  + +           +A       G A
Sbjct: 800 VETVFGR--RLWLPEINGGNGPRRQAAERAAINAPMQGTA 837


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   K+         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896


>gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302]
 gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302]
          Length = 680

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 96/551 (17%), Positives = 169/551 (30%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P                V     + ++L        L   EQ L ++   +   
Sbjct: 234 GVKKAIPERETFLEHLARKVAVLVETEPVLLEKLSENGQLNLLYDMEQPLAFVLAKMEIA 293

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    ++   KL QE+  L  G   +    ++L   LF   G  +E   
Sbjct: 294 GIKVKKETLLEMQAGNELVIEKLTQEIYELA-GEEFNINSPKQLGELLFENLGFPIEYTK 352

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 353 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 405

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 406 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 440

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 441 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 500

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 501 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 544

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 545 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 573

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 574 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 600

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      +    M    
Sbjct: 601 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAAIKKIVKQTMEEAI 660

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 661 Q--LSVPLIAD 669


>gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 875

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/619 (14%), Positives = 182/619 (29%), Gaps = 139/619 (22%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQKME 124
           T V +++      +     +   I      ++LA     PS         A++    ++E
Sbjct: 366 TKVVYDAKKTMVAMNR---MGFAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVE 422

Query: 125 EGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
             + +  +  K     E +   +      A     +    D     E  ++L  +   E 
Sbjct: 423 TDEAVYGKGAKRSTPEESIVAGHLARKAVAIAELEKRLVDD----LEKNEQLALMEDLEL 478

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L ++   +  +G  VD      +   +      L+  + SL  G   +    ++L   L
Sbjct: 479 PLTFVLAQMEMQGVSVDTERLENMKVELAGRLKTLETSIHSLA-GEEFNINSPKQLGVIL 537

Query: 244 FLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           F +  L     T+T   T   VL S         ++   R                    
Sbjct: 538 FEKLELPPVKKTKTGYSTAADVLESLSGKHDIIDEILLYRQL------------------ 579

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
            G+++ T        T +               + H   +Q +T      + DP+   I 
Sbjct: 580 -GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQNIP 626

Query: 361 -----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  T  
Sbjct: 627 IRLEEGRKIRQVFVPSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAM 686

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F+V   +V    R   K +   + Y        +     G+        +        
Sbjct: 687 DVFHVEQEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFVSYP 743

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                   +    +    A E  ++ T   R     R+    +                 
Sbjct: 744 ------AVKEYMHDIVRFAKEKGYVETILHR-----RRYIPEIVS--------------- 777

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                          R+   R     R+ +NT            
Sbjct: 778 -------------------------------RNFNVRGF-AERTAMNTP----------- 794

Query: 595 GKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  +Q  + DI+ + M      + + +    ++L VHDE++ E P+ +      + 
Sbjct: 795 -------IQGSAADIIKKAMILMSERLESEQLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847

Query: 649 -HLMTSNPSWAKGLPLKAE 666
             +M +       +PLK +
Sbjct: 848 PDVMENAVE--LSVPLKVD 864


>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
 gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
          Length = 908

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 110/650 (16%), Positives = 198/650 (30%), Gaps = 144/650 (22%)

Query: 39  DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
                  D    DP   + L   L +  V    H +      +         +       
Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAKL---AIHDLQGRGWTLAGVTSDT 423

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            LA     P        +  L    +   K  +      +    L D +     +A +  
Sbjct: 424 ALAAYLVRPGQ-----RSFALDDLSLRYLKRELRADNPEQQQLSLLDDSDGVDDQAVQTL 478

Query: 158 GEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  V +   + + L        L + E  +  +   +   G  VD+ +   L Q  
Sbjct: 479 LLRASAVVDLADALDEELARIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGL-QSE 537

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             ++ +   E      G   +    ++L+  LF E  +     T+T       + + L  
Sbjct: 538 FADQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLFD 597

Query: 272 QAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           +    F   + A R A    + ++ L+ A+ SDGR+  T                     
Sbjct: 598 KTGHPFLQHLLAHRDATRLKVTVDGLLNAVASDGRIHTT--------------------- 636

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLA 382
                      +Q I       +++P+   I         +R   +  +G  +L+ AD +
Sbjct: 637 ----------FNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYGELMTADYS 686

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ ++  ++AF TGEDL+    +R+F+V   +VT + R   K M   L Y 
Sbjct: 687 QIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAYG 746

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             A    +    +                                               
Sbjct: 747 LSAYGLSQQLKIS----------------------------------------------- 759

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            E  K+   Q  +R   + + L    +Q  ++G       RR                 L
Sbjct: 760 TEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRY---------------L 804

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
           P   S                + +  RE      L   I Q  + DI+   M+N  +A  
Sbjct: 805 PELDS----------------SNRQVREAAERAALNAPI-QGSAADIIKVAMINVDQAIK 847

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
                   +L VHDE++ E  D +      L    M S  ++A  +PL+ 
Sbjct: 848 DAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGS--AYALDVPLEV 895


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 111/662 (16%), Positives = 215/662 (32%), Gaps = 148/662 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             VI  AFG ++  V + D     V  +V K+ L +  V     ++     VL   F  D
Sbjct: 337 AEVIAVAFG-NEKNVFVTDL-DTAVASEVFKKWLSDASVEKHLFDTK-AAKVLAHRFGFD 393

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +   ++    +LA        +K + +  +     +    E +  + KG   +   D+  
Sbjct: 394 LKGAKY-DVSLLAYLVDTNDIVKEISDVARRVDVTILSSDEAV--YGKGVKIQIPEDKEV 450

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDV 201
            N   A ++F            ++ KRLE           E  L  +   +  +G  VD 
Sbjct: 451 WNQHLAAKVFTI-----AKAPEKLLKRLEENEQTHLYWEMELPLSDILARMEIQGIRVDR 505

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                +    +    +++QE+  L  G   +    ++L   LF + GL +   T+T    
Sbjct: 506 ERLVEMGVEFEERLKEIEQEIYELA-GEEFNINSTKQLGVILFEKMGLPVIKKTKTGYST 564

Query: 262 ---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL       P    +   R  A  ++   +  L   +  D                 
Sbjct: 565 AVDVLEKLAHQAPIVELILEYRQLAKLNST-YVEGLQAYIQED----------------- 606

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                          + H    Q +T      + DP+   I         +R   +   +
Sbjct: 607 --------------GKIHTRFIQNLTQTGRLSSVDPNLQNIPIRTKEGRRIRYAFLPEHD 652

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
             K++ +D + IE RVLA +AG++  ++AF+   D++  T  R F ++ P  VT + R  
Sbjct: 653 DWKILSSDYSQIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQ 712

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y        +      ++       +        + +     +   E+  +
Sbjct: 713 AKAVNFGIVYGISDYGLSQ---NLNISRKRAKEFID------RYLEEFQGVKDFMESIVK 763

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
            A E  ++ T                                        +RR +P ++ 
Sbjct: 764 EAREKDYVETLF-------------------------------------HRRRYLPDIHS 786

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                       + RS         R+ +N+                   +Q  + DIL 
Sbjct: 787 SNF---------NLRSFA------ERTAMNSP------------------IQGSAADILK 813

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLK 664
             M+   +         +++L VHDE++ E P  +  +   L   +M +  S    +PL+
Sbjct: 814 MAMIELDREMRERKFKANLLLQVHDELIFEVPQDELESLQSLVEGVMENAVS--LKVPLR 871

Query: 665 AE 666
           A+
Sbjct: 872 AD 873


>gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 223

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 7/215 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP+ LK  L++
Sbjct: 10  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
            ++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL ++ +   ++S  
Sbjct: 69  PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI  FCK         R     H E W  F  Y   D+   REI++ L   +
Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188

Query: 180 S--KEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
               E  LW LDQ IN RG C+DV LA +    V+
Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELAKSALTAVE 223


>gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
 gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
          Length = 934

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 99/650 (15%), Positives = 200/650 (30%), Gaps = 141/650 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
            ++     DD+   L D          +++AL++  +    H+     ++L       + 
Sbjct: 402 TLMAGLAADDNTALLLDLNAPEA--TAIRDALKDPALPKTTHDLK---SLLHTAGQRGLE 456

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-KP 148
           I      ++L      P             S K+ +    + +                P
Sbjct: 457 IANVAHDVMLYSYLINP----------THGSHKLADVAARMGQSITPLVKNQTPPATALP 506

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
               A           +       + L+P    +  L  +   +   G  +D  +   ++
Sbjct: 507 EAASAIHRLAP--ALRIQAEEG--ELLKPYEEIDLPLVPVLLRMEQVGCRIDSQVLRDMS 562

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVL 263
             + V+   L + + +++ G   +    ++L   LF +  L             T Q VL
Sbjct: 563 SKLAVDMDALAERIYAMS-GHRFNINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVL 621

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                       V   R  A   +                                    
Sbjct: 622 EELAAHHEAPALVLEYRQLAKLRSNYTEQL------------------------------ 651

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV 378
             PQ   R  R H   +Q+ T      +++P+   I     +   +R+  I +EG  L+ 
Sbjct: 652 --PQLADREGRVHTTFNQVGTATGRLSSTNPNLQNIPTRTALGREIRAAFIPAEGNVLLS 709

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A  + +   L A+ TG+D++  T A  F V P  + K+ R   K +   
Sbjct: 710 ADYSQIELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFG 769

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y         +A+  G+        ++                               
Sbjct: 770 IVYGISPF---GLAAQLGIPQGEAKLYIE------------------------------- 795

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK-AIIARKRRDVPLVYMKKDKNN 557
                      +R++++ V+     + +    T   GK + +  + R +P +  +     
Sbjct: 796 ----------RYRERYAGVTAF---IERTISDTRSTGKVSTLFGRTRPIPDIGSRN---- 838

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                P+ R          R+ +NT  +         G   + I  A+   +  +  +  
Sbjct: 839 -----PNQRGFA------ERTAVNTPLQ---------GTAADMIKIAM---LKIDAALTE 875

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
            K    + L VHDE++ + P  +    + L  L M    S    +P+ AE
Sbjct: 876 RKLATRMTLQVHDELLFDAPVGETEEVAALVKLEMEGVVS--LSIPIVAE 923


>gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 416

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/516 (17%), Positives = 174/516 (33%), Gaps = 130/516 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             E  ++L+  +  E+ L  +   +   G  VD     T+   +    ++L+QE+ +   
Sbjct: 3   ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEA- 61

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284
           G   +    ++L   LF +  L +   T+T       VL   + ++P    +   R  A 
Sbjct: 62  GEEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 121

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
             +   +  L++ ++                               +  ++H    Q +T
Sbjct: 122 IQSTY-IEGLLKVVSK------------------------------KDGKAHTRYTQTLT 150

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                 + DP+   I         +R   + S  G ++  +D + IE RVLA ++ ++  
Sbjct: 151 STGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNM 210

Query: 399 LKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            +AF+ G D++ +T  R FNV  P +VT + R   K +   + Y        +     G+
Sbjct: 211 QEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NIGI 267

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       + T      + D  +  +   E   E A E+ ++ T                
Sbjct: 268 SRKQAKQFIDT------YLDTFSGVKDYMEKIVEFAKENGYVETIFN------------- 308

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                   +RR +P +  +           + RS         R
Sbjct: 309 ------------------------RRRYLPDIKSRNF---------NLRSFA------ER 329

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
           + +N+                   +Q  + DI+   M+N             ++L VHDE
Sbjct: 330 TAMNSP------------------IQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDE 371

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           ++ E P  +      M+  +M S       +PLK E
Sbjct: 372 LIFEAPTKEIPLLEDMVPKVMDSAVK--LDVPLKVE 405


>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
 gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
          Length = 931

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 96/639 (15%), Positives = 177/639 (27%), Gaps = 150/639 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LE+  V  +  N  ++  +      + +        +  A++ G          
Sbjct: 407 DLLKPVLEDPAVLKIGQNMKYDAKIFARY-GVKVAPFDDTMLMSYAQNAG-KHNHSMDSL 464

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +         K L+     G     +     P          +Y   D  VT  +++ 
Sbjct: 465 SERYLGHSPISIKTLL-----GTGKSAITFDKVPVAD-----AVKYAAEDADVTLRLWQF 514

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L PL             E+ L  +   +   G  VD      ++     +   L+ E+  
Sbjct: 515 LGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDTLSRMSNAFAQKMAGLEAEIHE 574

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
              G   +    ++L   LF +  L      +T    T   +L            V + R
Sbjct: 575 KA-GQSFNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGADILEDLATEHELPALVLDWR 633

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+                  R H    
Sbjct: 634 QL-------------------------------SKLKSTYTDALQDHINAETGRVHTSYS 662

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
               +     ++DP+   I         +R   +A EG  L+  D + IE R+LA +A  
Sbjct: 663 IAGANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAKI 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G D++  T ++ FNV    +    R   K +   + Y  G   F  +A   
Sbjct: 723 DALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAINFGVIY--GISGF-GLARNL 779

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +                   +A+ F     E  P                    R    
Sbjct: 780 RIPR----------------AEAQAFINTYFERFP------------------GIRTYMD 805

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
              E                    A++   V  ++ +K      +  P   +        
Sbjct: 806 ETVEF-------------------AKEHNFVQTLFGRK------IHTPDINAKGPGAGFA 840

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631
            R+ +N                    +Q  + D++   M+    A       ++L VHDE
Sbjct: 841 KRAAINAP------------------IQGTAADVIRRAMIRMPAAIKDLPAKMLLQVHDE 882

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
           +V E  +   E   + +  +M +    A    +PL  + 
Sbjct: 883 LVFEVAEDAVEDVTNAVRKVMENAAEPAIKLTVPLTVDA 921


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 99/601 (16%), Positives = 190/601 (31%), Gaps = 138/601 (22%)

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR----FCKGETHEC 141
            D+ +      L++A     PS       +  LS     +G + I      + KG   + 
Sbjct: 382 KDVLLDGVDFDLLMASYLLDPSH-----SSHDLSDIATRKGAKSIQADEAVYGKGAKRKV 436

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                   H           K  +    +  ++ E     E  L  +   +   G  VD+
Sbjct: 437 PETDVLAEHLVRKANVIYELKERMEEELKKNEQFELFKDLEMPLSVVLGRMETEGVKVDI 496

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                + + +     +L++ +     G+  +    ++L   LF + GL +   T+T    
Sbjct: 497 DQLKAMGEDLASRLAELEKHIHEHA-GVSFNINSPKQLGEVLFEKLGLPVIKKTKTGYST 555

Query: 262 ---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL    +       + + R    +     +  LV+  +                   
Sbjct: 556 SADVLEKLAEDHEIIRHILHYRQL-GKLNSTYIEGLVKVTHKG----------------- 597

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE- 372
                         S+ H   +Q +T      ++DP+   I         +R   I SE 
Sbjct: 598 -------------TSKIHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFIPSEE 644

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G K++ AD + IE RVLA +A ++  + AF+   D++  T    F+V+   VT   R   
Sbjct: 645 GWKILAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEEDVTSMMRRSA 704

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y        +   + G+     A  ++            N   +M E   E 
Sbjct: 705 KAVNFGIVYGISDYGLSQ---SLGITRKEAAKFIE-----RYLASYPNVAEYM-ERIIEE 755

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A E+ ++                                     + +  +RR +P +  +
Sbjct: 756 ARENGYV-------------------------------------STLLNRRRYLPELTSR 778

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        RS         R+ +NT                   +Q  + DI+ +
Sbjct: 779 NFNQ---------RSFA------ERTAMNTP------------------IQGTAADIIKK 805

Query: 613 GM----MNATKAGY--DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M    +   +A     ++L VHDE++ E P  +      +   +M +    A  +PLK 
Sbjct: 806 AMVEMALRLEEANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENAVELA--VPLKV 863

Query: 666 E 666
           +
Sbjct: 864 D 864


>gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334]
 gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334]
          Length = 889

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 443 GVKKALPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIA 502

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    ++   KL QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 503 GITVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 561

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 614

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 710 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKSYIDTYF------------- 753

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 810 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 869

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 870 Q--LSVPLIAD 878


>gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
 gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
          Length = 882

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 97/525 (18%), Positives = 162/525 (30%), Gaps = 126/525 (24%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                     +T   +     E  +  E  L  +   +   G  VDV +  T       +
Sbjct: 457 AAAIMELAEKLTTELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQ 516

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
             + ++    L      +    ++L+  LF    +     T+T         ++L  +  
Sbjct: 517 VAEQERSARELAGDDKLNLNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHP 576

Query: 275 QVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             F + + A R        L  L++ +  DGR+                           
Sbjct: 577 HPFLDHLLAHREYQKMKTTLEGLIKTVQPDGRI--------------------------- 609

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIE 385
               H   +Q +T      +++P+   I         +RS  I  EG ++L+ AD + IE
Sbjct: 610 ----HTTFNQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIE 665

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RV+A ++ +   ++A++ GEDL+    +R F+V   QVT + R   K M   L Y   A
Sbjct: 666 MRVMAHLSADPGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSA 725

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +                                                +G     
Sbjct: 726 FGLSQQ-----------------------------------------------LGIPAGE 738

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
            K        R   +   L    EQ  ++G       RR                 LP  
Sbjct: 739 AKSIMESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRY---------------LPE- 782

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI- 624
                         LN+  R L RE      L   I Q  + DI+   M+   +A  D+ 
Sbjct: 783 --------------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALRDMK 826

Query: 625 ---VLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
              +L VHDE+V E  P   +    +L   M S       +PL+ 
Sbjct: 827 SRVLLQVHDELVVEVAPGEADQVREILEREMDSAIE--LNVPLEV 869


>gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
 gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
          Length = 885

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 113/687 (16%), Positives = 211/687 (30%), Gaps = 166/687 (24%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVAHNSYFE 76
           +  Y ED  V + A+        ++  V  P M       L    E   +  V H    +
Sbjct: 327 VYAYREDDRVWVAAY-IGG----VYYFVEKPAMVSAFFSGLGEIPEADSLQTVGH----D 377

Query: 77  RTVLKACFNLDIP-IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
              L   ++     I  +     +      PS      +   L +  M+   + I     
Sbjct: 378 LKNLTHIYHSQCSVIVNYTFDTYIGAYLLNPS-----DQRYDLQTVAMKYLGDTIQ---- 428

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------E 182
             + E  + R K   R             V     I +  +PL+ K             E
Sbjct: 429 --SEEDFFGRGKTLVRAEDMDSARLAAFMVKNCEVIHRLEKPLAEKIEADGMTGLFQNIE 486

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +  ++ + G+ VD+     L+   + +   L  E+  L      +    ++L T 
Sbjct: 487 LPLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELAEEDDFNINSTKQLGTI 546

Query: 243 LFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           LF +  L +   T+T       VL       P   ++ + RM                  
Sbjct: 547 LFDKLKLPVVKKTKTGYSTNAEVLDQLVLFHPIIQKIIDYRM------------------ 588

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                         S+     G        P+  + +   +Q +T      +SDP+   I
Sbjct: 589 -------------ISKLDSTYGKGLIKLVDPKTHKIYSTFNQTVTATGRLSSSDPNLQNI 635

Query: 360 I-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   + S G + LV AD + IE RVLA ++G++  +  F   +D++  T 
Sbjct: 636 PVKTEMGREIRKVFVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTA 695

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  FNV    V+++QR+  K +   L Y   A +        G+        +       
Sbjct: 696 SEIFNVPMDAVSREQRSHAKAINFGLIYGKQAFSL---GKDLGITRGEAQSYID--LYFS 750

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +     +   ++    E                         V+ +W            
Sbjct: 751 RYPKVLEYMENIKAEAKEKG----------------------YVTTIW------------ 776

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +  +              + R+ +    G  R  LNT           
Sbjct: 777 -------GRRRYITEI--------------NSRNRMLVQAGE-RMALNTP---------- 804

Query: 594 GGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEIVCETPDTDEFNA-SM 646
                   +Q  + DI+   M+       + G    ++L VHDE++ +T  T++     +
Sbjct: 805 --------IQGAAADIIKIAMIKVYDRLEREGLKSKLILQVHDELIIDTLKTEQETVMKL 856

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L   M +       +PL  + +    +
Sbjct: 857 LVEEMENAVD--LKVPLTVDAHAGDSW 881


>gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353]
          Length = 880

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 113/677 (16%), Positives = 210/677 (31%), Gaps = 171/677 (25%)

Query: 28  VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
             ++        +    + D     V   D +  P+    L +    T     A      
Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQDFLSKTALKTYDLKRA------ 379

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCK 135
             VL + + +++P         LA+          +    +L  Q  +    E+  +  K
Sbjct: 380 -KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK 436

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLD 189
                    R  P+  + +       +  +     + ++L        L   EQ L ++ 
Sbjct: 437 ---------RALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVL 487

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+      +    +     L QE+ +L  G   +    ++L T LF +  L
Sbjct: 488 AKMEIAGIKVERETLQGMQAENEKTLESLTQEIYNLA-GQEFNINSPKQLGTILFEDMRL 546

Query: 250 HLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            LE    T+T       VL     + P   ++   R   S+     +  L EA+ +DG+ 
Sbjct: 547 PLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK- 604

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
                                          H    Q +T      + DP+   I     
Sbjct: 605 ------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLE 634

Query: 361 -SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F 
Sbjct: 635 QGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFG 694

Query: 419 VA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           +     VT + R   K +   + Y         +A+  G++       ++T         
Sbjct: 695 IERAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF------- 744

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-K 536
                                                 R   + N +     +  + G  
Sbjct: 745 -------------------------------------ERFPGIKNYMETIVREARDKGYV 767

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
             I  +RR +P +              + R+   R+    R+ +N+              
Sbjct: 768 ETIYHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799

Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649
                +Q  + DIL   M+N  +A         ++L VHDEIV E P+ +      L   
Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854

Query: 650 LMTSNPSWAKGLPLKAE 666
            M +    A  +PL A+
Sbjct: 855 TMEAAIELA--VPLVAD 869


>gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
 gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
          Length = 888

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 101/631 (16%), Positives = 204/631 (32%), Gaps = 141/631 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAV 112
           LK+ L++  V     N+  +   L     L IP+      L+LA          + L  V
Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR---LGIPLENINFDLLLASYLLNTNDNSNDLGQV 422

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +       + +E  E+  +  K        D    +H        E+ + D     +  
Sbjct: 423 AQEHGYDDVRTDE--EVYGKGAK--RAVPDDDETFFSHLATKARAIEHLRKDFFAKLDEN 478

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           K+    +  E  L  +   +   G  VD      +   +    ++++ ++     G   +
Sbjct: 479 KQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEA-GEEFN 537

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T       VL      +P   Q+   R  A   +  
Sbjct: 538 INSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQIAKLQSTY 597

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ ++S+                                + H    Q +T     
Sbjct: 598 -ITGLLKVIHSND------------------------------QKIHTRYLQTLTQTGRL 626

Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R   + S EG ++  +D + +E RVLA + G++   + F+
Sbjct: 627 SSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFK 686

Query: 404 TGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            GED++ +T  R F++AP  ++ ++ R   K +   + Y         +A    ++    
Sbjct: 687 NGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDY---GLAQRIHVSRAEA 743

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              ++  +   E+   + +         E+   +                          
Sbjct: 744 HEFIQ--NYFHEFPGVKKYINDTIAFAKENGYVE-------------------------- 775

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                           I  +RR +P ++ K           S RS         R+ +NT
Sbjct: 776 ---------------TITHRRRYLPDIHAKSF---------SKRSFA------ERTAMNT 805

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636
                              +Q  + DI+   M+              ++L +HDE+V E 
Sbjct: 806 P------------------IQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEA 847

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           P  +    + ++  +M S       +PLK +
Sbjct: 848 PKEEIPILSELVPKVMDSAVK--LDVPLKVD 876


>gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
 gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
          Length = 1022

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 99/621 (15%), Positives = 190/621 (30%), Gaps = 153/621 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113
           LK  LEN ++  +  +  ++  VL      L++    W    +LA      +A       
Sbjct: 488 LKPILENPNIGKIGQHLKYDAHVLSKYGIELNMSPKNWEMDTMLASYVLNAAATRHSMDD 547

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K  T + +          A  +  +Y   D  +T ++F+
Sbjct: 548 LARHYLHTQTISFEDVAGKGAKQVTFDKV----------AINIASDYACEDADITYQLFE 597

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +            L   E  +  +   +   G  +  +  + L++  D E   L+++ 
Sbjct: 598 LFQDKLKDDAVNQRLLHELEIPVAQILCQMESEGIMIKRSFLNELSERFDEEIVALEKQA 657

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             +  G   +    ++L   LF + G+     T++    T + VLS  +   P A     
Sbjct: 658 Y-IEAGEAFNLGSPKQLGEMLFDKLGVIGGKKTKSGQYSTGEAVLSKIE--HPLAEIALE 714

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A           ++A+  +                                R H  
Sbjct: 715 YRSLAKLKNT--YTDALDAVADND-----------------------------TDRVHTS 743

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             Q +T      ++DP+   I         +R   IA +G+ L+ AD + IE R++A  +
Sbjct: 744 YHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQAFIAPKGRVLLAADYSQIELRLMAHFS 803

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+    +AF  G D++  T A     +   VT  +R   K +   L Y   A    K   
Sbjct: 804 GDDNLTRAFNEGLDIHSATAAEVLGKSVDDVTPTERRNAKAINFGLLYGMSAFGLAKQIQ 863

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                  +A+++       +P             +R  +  R  
Sbjct: 864 -------------------MGRSEAQDYINQYFARYP-----------GVQRYMQETRN- 892

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                   + +   + +TI                                GR L   D+
Sbjct: 893 --------SAVDNGYIETIL-------------------------------GRKLYTPDI 913

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                     + Q+ R            +Q  + D++   M+       K    ++L VH
Sbjct: 914 --------QHSNQMVRRGAERA-AINAPLQGSAADLIKLAMIAVDNVLPKQNAKMLLQVH 964

Query: 630 DEIVCETPDTDEFNASMLYHL 650
           DE+V E           +  L
Sbjct: 965 DELVFEVDAD---KVDHIAKL 982


>gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
 gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
          Length = 897

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 90/638 (14%), Positives = 190/638 (29%), Gaps = 135/638 (21%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
              +  + +  K   E+ ++    H+       LK      I ++      ++      P
Sbjct: 366 LTENEFL-EGFKSIFEDGEIKKYGHDLKNFIVYLKQ---NGIELNGVAFDTMIGAYIINP 421

Query: 107 SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           S        L     +  ++  +E+  +         +      N    +          
Sbjct: 422 SRETYTISELAADFLNTNVKPIEEMAGKGKSFLPFGSMDVEELKNVVGLYPEIIYKAMKK 481

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +        +L      E  L  +   +   G+ +++     +++ +D +  +L  ++  
Sbjct: 482 IDDKLNENDQLNLYYKIELPLVRVLADMEFYGFKININELTVISRQLDEKINQLTLKIYE 541

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF +  L +   T+T       VL    +       +   R 
Sbjct: 542 LA-GEEFNINSPKQLGVVLFEKLELPIIKKTKTGYSTDAEVLEELAEKHEIVSNILEYRQ 600

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                +       + A+                               P   + H   +Q
Sbjct: 601 LVKLKST--YIEGLMAV-----------------------------INPHTGKIHSSFNQ 629

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGE 395
            +T      +++P+   I         +R   +  +G  KLV AD + IE RVLA +  +
Sbjct: 630 TVTVTGRISSTEPNLQNIPIKLEMGRNIRKAFVPCDGNYKLVDADYSQIELRVLAHITDD 689

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF   ED++ +T ++ F V   +VT   R+  K +   + Y  G  +        
Sbjct: 690 ENMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAVNFGIVYGIGDFSLS---KDL 746

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+      + +        + D     R    +      E  F+                
Sbjct: 747 GITRKEARNYIDG------YLDKYANVRKYMHDIVAQGKEFGFV---------------- 784

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                  +  +RR +P +                 +   R  G 
Sbjct: 785 ---------------------TTMFNRRRYLPELKAS--------------NFNVRSFGE 809

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVH 629
            R  +NT                   +Q  + DI+   M      +N  +    ++L VH
Sbjct: 810 -RIAMNTP------------------IQGSAADIIKIAMVMVHSELNRRQLKSRLILQVH 850

Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           DE++ E  +++    +M+    M +    A  +PL  +
Sbjct: 851 DELIIEAHESELEEVTMILKESMENAT--ALKVPLSVD 886


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 87/547 (15%), Positives = 161/547 (29%), Gaps = 135/547 (24%)

Query: 142 LYDRNKPNHREAWRLFGEYCK---------GDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
              R  P+                       D  + R    RL  L+  EQ L  +   +
Sbjct: 432 GAKRTVPDEPTLAEHLARKAAAIWALEEPLMD-ELRRNEQDRL--LTELEQPLAGILANM 488

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD      +   +  +   +++ +  L  G   +    ++L T LF +  L + 
Sbjct: 489 EFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA-GQEFNINSPKQLGTVLFDKLQLPVL 547

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
             T+T         +KL P    V                               L +  
Sbjct: 548 KKTKTGYSTSADVLEKLAPHHEIVE----------------------------HILHYRQ 579

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
             +              P   + H   +Q +T      + +P+   I         +R  
Sbjct: 580 LGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQA 639

Query: 368 VIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            + SE    +  AD + IE RVLA +A +   ++AF  G D++  T    F+V+   VT 
Sbjct: 640 FVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTA 699

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A    +     A  +      E +  +    +   
Sbjct: 700 NMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEFI------ERYFASFPGVKQYM 750

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +N  + A +  ++ T   R     R+    ++                            
Sbjct: 751 DNIVQEAKQKGYVTTLLHR-----RRYLPDITS--------------------------- 778

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                              R+   R     R+ +NT                   +Q  +
Sbjct: 779 -------------------RNFNVRSF-AERTAMNTP------------------IQGSA 800

Query: 607 RDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            DI+ + M++        +    ++L VHDE++ E P  +      L   +M      A 
Sbjct: 801 ADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAV--AL 858

Query: 660 GLPLKAE 666
            +PLK +
Sbjct: 859 RVPLKVD 865


>gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 876

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    F+ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278]
 gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 107/630 (16%), Positives = 201/630 (31%), Gaps = 132/630 (20%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
            LK  LE+T +  + +N  F   +L       I +      L+++ +      + K    A
Sbjct: 508  LKPVLESTGLLKIGYNIKFLAVLLAQH---GITLQNVDDILLMSYALDAGRGSHKLDSLA 564

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
              + +  +    ELI                    + A      +      V   +++ L
Sbjct: 565  EHVLAHAIISEGELI----------GSGKNKLTFEQVAIDRATAHAAEAADVIHRVWRVL 614

Query: 176  EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +P  + E+           L  +   +  RG  +D  +   L+        +++ EL+ L
Sbjct: 615  KPRLTAERMTAVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAELQEL 674

Query: 226  TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              G   +    +++   LF + GL     T+T      +S      +             
Sbjct: 675  A-GEPINVGSPKQIGDILFGKMGLSGGTRTKTGAWSTSASILDDLAE------------- 720

Query: 286  SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                           +   R  L++   S+         P    P+  R H       T 
Sbjct: 721  -------------QGNDFARKILEWRQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATT 767

Query: 346  LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                 +++P+   I         +R   IA+ G KLV AD + IE R+LA +A      +
Sbjct: 768  TGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQ 827

Query: 401  AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            AF+ G D++  T +  F V    +  + R   K +   + Y   A     +A+  G+   
Sbjct: 828  AFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAF---GLANQLGIAR- 883

Query: 461  TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                           E+A  + +   E  P        I    +  ++  R+ +  V  L
Sbjct: 884  ---------------EEASAYIKRYFERFP-------GIRAYMDETREFCRK-NGYVVTL 920

Query: 521  WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +                    ++   P +              S R+   R   N R   
Sbjct: 921  F-------------------GRKCHYPEIKASNA---------SVRAFNERAAINARL-- 950

Query: 581  NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                          G   + I +A++R    E  +   K    ++L VHDE++ E P+ +
Sbjct: 951  -------------QGTAADIIRRAMTR---VEEALAQKKLSAQMLLQVHDELIFEVPEDE 994

Query: 641  -EFNASMLYHLMTSNPSWA--KGLPLKAEG 667
                  ++ H+M   P  A    +PL  + 
Sbjct: 995  VAATLPVVQHVMQDAPFPAVLLSVPLHVDA 1024


>gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20]
 gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20]
          Length = 881

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/633 (14%), Positives = 184/633 (29%), Gaps = 154/633 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++ +     +++      L                ++LA        L        ++ 
Sbjct: 365 LKDEERKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYL-----LDTNDTNNDIAG 416

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV----------TRE 170
                G + I        +     +  P   E    F  +    V               
Sbjct: 417 VAAHYGYDAIQ--SDEAIYGKGAKKGLPADEED---FFAHLARKVAAITNLTPKLTEELA 471

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
              +       E  L  +   +   G  VD +  H +         ++++++ +   G  
Sbjct: 472 AKNQTALFEEMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEA-GET 530

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF + GL +   T+T       VL   K+  P    +   R  A   +
Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQIAKIQS 590

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ +  DG++                               H    Q +T   
Sbjct: 591 TY-VEGLLKVIQGDGKV-------------------------------HTRYVQTLTQTG 618

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R   +  E    +  +D + IE RVLA ++ +    +A
Sbjct: 619 RLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEA 678

Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F  G+D++ +T  R F +     VT + R   K +   + Y        +     G+   
Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 735

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T      + +     +   E+    A +  ++                     
Sbjct: 736 AAQQYIDT------YFEKYPGVKTYMEDVVREAKDKGYVE-------------------- 769

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             +  +RR +P +              + R+   R     R+ +
Sbjct: 770 -----------------TLYHRRRYLPDI--------------NSRNFNIRTF-AERTAI 797

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           NT                   +Q  + DIL   M++        K    ++L VHDE+V 
Sbjct: 798 NTP------------------IQGSAADILKIAMIDLVKRLKEEKLAATMLLQVHDELVF 839

Query: 635 ETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           E P+++      L   +M      A  +PL  +
Sbjct: 840 EVPESELPRLDALVKEVMEQAV--ALHVPLLTD 870


>gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20]
 gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20]
          Length = 894

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 102/660 (15%), Positives = 192/660 (29%), Gaps = 154/660 (23%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVE--LW--DCVH---DPVMPQVLKEALENTDVTI 68
           + K G           L A      PVE   W  D  +   +    +  K+ LE+ ++  
Sbjct: 332 IDKTG------SFSQKLAAIAI--SPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKK 383

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             H+       L    N  I  +      ++      PS        L          K 
Sbjct: 384 YGHDLKNFIVYLN---NRGIDFNGLAFDTMIGAYIINPSKETYTISELA-QEYLNLSVKA 439

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------E 182
           +     KG++     D       +   ++         V+R+I   L+  + +      E
Sbjct: 440 VEKLAGKGKSFTLFKDMQPDVLSKTVGVYPHVIS---KVSRKIDSLLKENNQERLYYDIE 496

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L      +   G+ V+V      ++ +  +   + +E+ +L  G   +    ++L   
Sbjct: 497 LPLVRTLADMEYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLA-GEEFNINSPKQLGVI 555

Query: 243 LFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           LF + GL +   T+T       VL           ++   R                   
Sbjct: 556 LFEKLGLPIIKKTKTGYSTDAEVLEELSDRHEIVEKILEYRQL----------------- 598

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                          +              P   + H   +Q +T      +++P+   I
Sbjct: 599 --------------VKLKSTYAEGLLAVINPYTGKIHSSFNQTVTATGRISSTEPNLQNI 644

Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                 S  +R   I   E   L+ AD + IE RVLA +  ++  + AF   ED++ +T 
Sbjct: 645 PIKLEMSRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTA 704

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F +   +VT   R+  K +   + Y  G  +    A    ++       +      +
Sbjct: 705 ASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSL---AKDLKISRKEARAYID--GYLD 759

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            + + +        +  E   E  F+ T   R     R+    +                
Sbjct: 760 RYPNVKK----YMHDIVEEGKEKGFVTTMFMR-----RRYLPELKS-------------- 796

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                           R+   R  G  R  +NT           
Sbjct: 797 --------------------------------RNFNIRSFGE-RVAMNTP---------- 813

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + DI+   M+         K    ++L VHDE++ ET   ++     +
Sbjct: 814 --------IQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKI 865


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/594 (17%), Positives = 189/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A   G
Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIG 800

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/594 (17%), Positives = 189/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 373 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 425

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 426 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 482

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 483 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 532

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 533 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 593 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 651

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 652 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 680

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 681 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 740

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A   G
Sbjct: 741 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIG 797

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 798 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 850

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 851 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 903


>gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
           polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 151/452 (33%), Gaps = 68/452 (15%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191
           L D +        R +G     D      + +RL          E++L +L         
Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLQGEEKLLWLYHEVEKPLS 440

Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                +   G  +DVA    L+  +  E  +L++E+  L  G   +    ++L+  LF E
Sbjct: 441 RVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499

Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             L     T+ T +R     VL + ++  P   ++  +R                     
Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359
                       ++         P    P   R H   +Q  T      +SDP+   I  
Sbjct: 541 ------------TKLKNTYVDPLPSLVHPNTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588

Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R   +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  
Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V P  V    R   K +   + Y   A    +++    +        +      E + 
Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            +    R   E   E   +  ++ T   R ++     ++RV  +     +        G 
Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A    K   V L    ++     ++L     L
Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604
                K +  +   L  GR   Y +   G  R   +   R +  RE           VQ 
Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            + D++   M        + G  ++L VHDE++ E P       + L    M      A 
Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQAGAEEVAALAKEAMEKAYPLA- 816

Query: 660 GLPLKAE 666
            +PL+ E
Sbjct: 817 -VPLEVE 822


>gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
 gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
          Length = 881

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/633 (14%), Positives = 183/633 (28%), Gaps = 154/633 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++       +++      L                ++LA        L        ++ 
Sbjct: 365 LKDEKRKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYL-----LDTNDTNNDIAG 416

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV----------TRE 170
                G + I        +     +  P   E    F  +    V               
Sbjct: 417 VAAHYGYDAIQ--SDEAIYGKGAKKGLPADEED---FFAHLARKVAAITNLTPKLTEELA 471

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
              +       E  L  +   +   G  VD +  H +         ++++++ +   G  
Sbjct: 472 AKNQTALFEEMELPLSMILAEMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEA-GET 530

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF + GL +   T+T       VL   K+  P    +   R  A   +
Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQIAKIQS 590

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ +  DG++                               H    Q +T   
Sbjct: 591 TY-VEGLLKVIQGDGKV-------------------------------HTRYVQTLTQTG 618

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R   +  E    +  +D + IE RVLA ++ +    +A
Sbjct: 619 RLSSVDPNLQNIPIRLEEGRKIREAFVPRETDWVIYSSDYSQIELRVLAHISDDTHLKEA 678

Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F  G+D++ +T  R F +     VT + R   K +   + Y        +     G+   
Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 735

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T      + +     +   E+    A +  ++                     
Sbjct: 736 AAQQYIDT------YFEKYPGVKTYMEDVVREAKDKGYVE-------------------- 769

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             +  +RR +P +              + R+   R     R+ +
Sbjct: 770 -----------------TLYHRRRYLPDI--------------NSRNFNIRTF-AERTAI 797

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           NT                   +Q  + DIL   M++        K    ++L VHDE+V 
Sbjct: 798 NTP------------------IQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDELVF 839

Query: 635 ETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           E P+++      L   +M      A  +PL  +
Sbjct: 840 EVPESELPRLDALVKEVMEQAV--ALHVPLLTD 870


>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
 gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
          Length = 879

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 94/638 (14%), Positives = 199/638 (31%), Gaps = 142/638 (22%)

Query: 53  MPQV-------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           +P+         KE  E+        ++      L     +++        ++LA     
Sbjct: 349 IPEETAVQSDCFKEWAEDESKKKWVFDAKRAAVAL-RWRGIEL--KGAEFDVLLAAYIIN 405

Query: 106 PS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           P  +   V    K     +    E +  + KG       ++   +H           +  
Sbjct: 406 PGHSYDDVASVAKEHQLHIVSADEAV--YGKGAKQAVPDEKELADHLARKAKAISLLREK 463

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +    E  ++LE   + E  L ++   +   G  VDV     + + +  +  + ++++  
Sbjct: 464 LLDELEENEQLELFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHE 523

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
            + G   +    ++L   LF + GL +   T+T       VL   +        + + R 
Sbjct: 524 -SAGETFNINSPKQLGVILFEKLGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQ 582

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ +  D                                + H   +Q
Sbjct: 583 -IGKLQSTYVEGLLKVIKKD------------------------------SHKVHTRFNQ 611

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
            +T      ++DP+   I         +R   + S +G  +  AD + IE RVLA ++ +
Sbjct: 612 ALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKD 671

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF    D++  T    F+V+  +VT   R   K +   + Y        +     
Sbjct: 672 KNLIEAFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQ---NL 728

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E +  +    +   E   + A +  ++ T              
Sbjct: 729 GITRKEAAAFI------ERYFHSFQGVKEYMEETVQEAKQRGYVTTLLS----------- 771

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                     +RR +P +  +           + RS        
Sbjct: 772 --------------------------RRRYIPELTSRNF---------NLRSFA------ 790

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M++             ++L VH
Sbjct: 791 ERTAMNTP------------------IQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVH 832

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P+ +      L   +M         +PLK +
Sbjct: 833 DELIFEAPEDEIKVLEKLVPEVMEHALE--LDVPLKVD 868


>gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00]
          Length = 876

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    F+ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
          Length = 881

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/621 (14%), Positives = 181/621 (29%), Gaps = 152/621 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + + +     +++      L                ++L         L    ++  +  
Sbjct: 365 ITDPNRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYL-----LDTNEKSTDIEG 416

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLS 179
                G   I        +     +  P   E   LF  +    V     +  +L   L+
Sbjct: 417 IAAHYGYNDIQ--SDETVYGKGAKKGLPEEEE---LFFAHLARKVAAINALTPKLSQELA 471

Query: 180 SK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            K         E  L  +   +   G  VD      +         +++Q++     G  
Sbjct: 472 DKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-GEE 530

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A   +
Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQS 590

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ + SDG++                               H    Q +T   
Sbjct: 591 TY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQTG 618

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++    A
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAA 678

Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F  G+D++ +T  R F +     VT + R   K +   + Y        +     G++  
Sbjct: 679 FLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGISRK 735

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T      + +     +   E     A +  ++                     
Sbjct: 736 AAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE-------------------- 769

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             +  +RR +P +    +  N  +     RS         R+ +
Sbjct: 770 -----------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERTAI 797

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634
           NT                   +Q  + DIL   M+   K          ++L VHDE+V 
Sbjct: 798 NTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVF 839

Query: 635 ETPDTDEFNASML-YHLMTSN 654
           E P+ +  +   L   +M   
Sbjct: 840 EVPEKELESLDKLVKEVMEQA 860


>gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
 gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
          Length = 875

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           +D + V +++      +     L   +      ++LA     PS         A++    
Sbjct: 363 SDASKVVYDAKKAMIAMHR---LGYAVSGITFDIMLASYLLNPSDSIDDFTSVAIRHDYT 419

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A  +  +    D     E  ++L  +  
Sbjct: 420 EVETDEAVYGKGAKRSTPEESVVAPHLARKAVAIAILEKRLLDD----LEKNEQLALMED 475

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL      +    ++L 
Sbjct: 476 LELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLA-EEEFNINSPKQLG 534

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T   T   VL S         ++   R                 
Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFV 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794

Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M      + + K    ++L VHDE++ E P+ +     
Sbjct: 795 ----------IQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864


>gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10]
 gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10]
          Length = 881

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/633 (14%), Positives = 184/633 (29%), Gaps = 154/633 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++ +     +++      L                ++LA        L        ++ 
Sbjct: 365 LKDEERKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYL-----LDTNDTNNDIAG 416

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV----------TRE 170
                G + I        +     +  P   E    F  +    V               
Sbjct: 417 VAAHYGYDAIQ--SDEAIYGKGAKKGLPADEED---FFAHLARKVAAITNLTPKLTEELA 471

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
              +       E  L  +   +   G  VD +  H +         ++++++ +   G  
Sbjct: 472 AKNQTALFEEMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEA-GET 530

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF + GL +   T+T       VL   K+  P    +   R  A   +
Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQIAKIQS 590

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ +  DG++                               H    Q +T   
Sbjct: 591 TY-VEGLLKVIQGDGKV-------------------------------HTRYVQTLTQTG 618

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R   +  E    +  +D + IE RVLA ++ +    +A
Sbjct: 619 RLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEA 678

Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F  G+D++ +T  R F +     VT + R   K +   + Y        +     G+   
Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 735

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T      + +     +   E+    A +  ++                     
Sbjct: 736 AAQQYIDT------YFEKYPGVKTYMEDVVREAKDKGYVE-------------------- 769

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             +  +RR +P +              + R+   R     R+ +
Sbjct: 770 -----------------TLYHRRRYLPDI--------------NSRNFNIRTF-AERTAI 797

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           NT                   +Q  + DIL   M++        K    ++L VHDE+V 
Sbjct: 798 NTP------------------IQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDELVF 839

Query: 635 ETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           E P+++      L   +M      A  +PL  +
Sbjct: 840 EVPESELPRLDALVKEVMEQAV--ALHVPLLTD 870


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 151/452 (33%), Gaps = 68/452 (15%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191
           L D +        R +G     D      + +RL          E++L +L         
Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLS 440

Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                +   G   DVA    L+  +  E  +L++E+  L  G   +    ++L+  LF E
Sbjct: 441 RVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499

Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             L     T+ T +R     VL + ++  P   ++  +R                     
Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359
                       ++         P    PR  R H   +Q  T      +SDP+   I  
Sbjct: 541 ------------TKLKNTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588

Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R   +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  
Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V P  V    R   K +   + Y   A    +++    +        +      E + 
Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            +    R   E   E   +  ++ T   R ++     ++RV  +     +        G 
Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A    K   V L    ++     ++L     L
Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604
                K +  +   L  GR   Y +   G  R   +   R +  RE           VQ 
Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            + D++   M        + G  ++L VHDE++ E P       + L    M      A 
Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816

Query: 660 GLPLKAE 666
            +PL+ E
Sbjct: 817 -VPLEVE 822


>gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
 gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
          Length = 889

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 460 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 519

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 520 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 578

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 579 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 614

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 615 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 666

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 667 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 726

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 727 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 753

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 754 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 784

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 785 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 826

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 827 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 878


>gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 835

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 101/616 (16%), Positives = 173/616 (28%), Gaps = 140/616 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           +D     H +              I +        LA     P          +  +   
Sbjct: 333 SDAPKYLHEAK---AAWHMLAGRGIELRGIAHDTALAAYLLRPG--------QRTYALTD 381

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L            + D N     +      E         +EI    E  +  E 
Sbjct: 382 VSQRHLQKSLGAATEQLSILDENP--LVDQAGAIMELAAELTAQLQEI-DSFELYTDLEL 438

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  VD  +  T       +  + ++    L      +    ++L+  L
Sbjct: 439 PLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVL 498

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNS 300
           F    +     T+T         ++L       F + + A R        L  L++ +  
Sbjct: 499 FDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTLEGLIKTIQP 558

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DGR+                               H   +Q +T      +++P+   I 
Sbjct: 559 DGRI-------------------------------HTTFNQTVTSTGRLSSTEPNLQNIP 587

Query: 361 -----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   +RS  +  EG   L+ AD + IE RV+A ++ +   ++A+  GEDL+    +
Sbjct: 588 VRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNYVGS 647

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F+V   +VT + R   K M   L Y   A    +     G+       +         
Sbjct: 648 KVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQ---QLGIPAREAKEI--------- 695

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                                    R   +   L +   Q  ++
Sbjct: 696 -----------------------------------MESYFERFGGVKRYLDEVVVQARKD 720

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G       RR                 LP                LN+  R + RE    
Sbjct: 721 GYTSTVFGRRRY---------------LPE---------------LNSDNR-VARENAER 749

Query: 595 GKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCET-PDTDEFNASMLYH 649
             L   I Q  + DI+   M+   KA       ++L VHDE+V E  P   E    +L  
Sbjct: 750 AALNAPI-QGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILER 808

Query: 650 LMTSNPSWAKGLPLKA 665
            M         +PL+ 
Sbjct: 809 EMDKAIE--LTVPLEV 822


>gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
 gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
          Length = 902

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 105/636 (16%), Positives = 184/636 (28%), Gaps = 158/636 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
             +   T V H+     T + A      P+    C   LA    LP            + 
Sbjct: 381 FADPTPTKVGHDLK---TAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGDLVQRY 437

Query: 119 ------SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                        G++L            + + N+    E         +  + +   + 
Sbjct: 438 LHRTLDPEHSTNAGQQL----------SLIPEENEGAQTEQDSRDMVRARAIIDLAEALE 487

Query: 173 KRLEPLSSK------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           + L+ L  K      E  +  +   +   G  VDV     L      E T   +   +  
Sbjct: 488 QHLDSLGQKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEI 547

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G   +    ++L+  LF E G+     T+T       +   L  Q    F   +   R 
Sbjct: 548 -GREVNLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHRD 606

Query: 287 AV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                + +  L +++  DGR+  T                                 Q +
Sbjct: 607 VTRLKVTVEGLRKSVGDDGRIHTT-------------------------------FQQTV 635

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQW 397
                  +++P+   I         +R   +       L+ AD + IE R++A ++ ++ 
Sbjct: 636 AATGRLSSTEPNLQNIPIRTDEGRLIRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEG 695

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF +GEDL+     ++F +   QVT + R   K M   L Y   A         +  
Sbjct: 696 LIEAFRSGEDLHTFVAMKAFGLPAEQVTPELRRRIKAMSYGLAYGLSAYGLSGQLKIS-- 753

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                                         +  K+      SR 
Sbjct: 754 ---------------------------------------------VDEAKEQMEAYFSRF 768

Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             + + L     +  ++G    I  +RR VP                             
Sbjct: 769 GGVRDYLRDTVARARKDGYTETIFGRRRYVPD---------------------------- 800

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
              LN+  RQ  R       L   I Q  + D++   M+N  +          ++L VHD
Sbjct: 801 ---LNSDNRQ-KRAMAERIALNAPI-QGSAADVIKVAMVNVQRRIRAEGLRSRMLLQVHD 855

Query: 631 EIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           E+VCE   D       +L   M      A  +PL+ 
Sbjct: 856 ELVCEVVADELAVMTELLKQEMGGAYPLA--VPLEV 889


>gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 893

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 94/521 (18%), Positives = 160/521 (30%), Gaps = 133/521 (25%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +      K  +     E  L  +   +   G  V+ A         +    +++Q++ +
Sbjct: 476 TSAALADAKLTKLYGEIELPLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYA 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNN 279
           L  G   +    ++L   LF   GL    + +T     T   VL   +   P   +V   
Sbjct: 536 LA-GTEFNISSPKQLGEVLFDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTY 594

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           RM                                S+              P   R H   
Sbjct: 595 RM-------------------------------WSKIRSTYLEGIGALIRPDTGRVHTSF 623

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMA 393
           +Q +T      +SDP+   I         VR+     EG   L+ AD + IE R+LA M+
Sbjct: 624 NQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFEPGEGYDALLSADYSQIELRILAHMS 683

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF  G+D++  T +  F V  A+VT  QR   K +   + Y        +   
Sbjct: 684 GDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQ--- 740

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+     A  +      E + +  +  R   +     A  + F+ T            
Sbjct: 741 DLGIPRKEAAGYI------ERYFERYHGVRAFLDRVVADAHTNGFVTT------------ 782

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                                   +  R+R                  LP+  S  +   
Sbjct: 783 ------------------------LYGRRRA-----------------LPAINSRNFMQR 801

Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVL 626
            N  R  +NT                   +Q  + D++   M+ A  A         I+L
Sbjct: 802 SNAERMAMNTP------------------IQGTAADLIKIAMIRADAALRAAGVKSRILL 843

Query: 627 TVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            VHDE+V E  + +    +  L   M+     A  +PL  +
Sbjct: 844 QVHDELVLEVVNDEIAQVTELLTAAMSGAAQLA--VPLAVD 882


>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580]
          Length = 879

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 94/638 (14%), Positives = 199/638 (31%), Gaps = 142/638 (22%)

Query: 53  MPQV-------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           +P+         KE  E+        ++      L     +++        ++LA     
Sbjct: 349 IPEETAVQSDCFKEWAEDESKKKWVFDAKRAAVAL-RWRGIEL--KGAEFDVLLAAYIIN 405

Query: 106 PS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           P  +   V    K     +    E +  + KG       ++   +H           +  
Sbjct: 406 PGHSYDDVASVAKEHQLHIVSADEAV--YGKGAKQAVPDEKELADHLARKAKAISLLREK 463

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +    E  ++LE   + E  L ++   +   G  VDV     + + +  +  + ++++  
Sbjct: 464 LLDELEENEQLELFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHE 523

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
            + G   +    ++L   LF + GL +   T+T       VL   +        + + R 
Sbjct: 524 -SAGETFNINSPKQLGVILFDKLGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQ 582

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ +  D                                + H   +Q
Sbjct: 583 -IGKLQSTYVEGLLKVIKKD------------------------------SHKVHTRFNQ 611

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
            +T      ++DP+   I         +R   + S +G  +  AD + IE RVLA ++ +
Sbjct: 612 ALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKD 671

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF    D++  T    F+V+  +VT   R   K +   + Y        +     
Sbjct: 672 KNLIEAFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQ---NL 728

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E +  +    +   E   + A +  ++ T              
Sbjct: 729 GITRKEAAAFI------ERYFHSFQGVKEYMEETVQEAKQRGYVTTLLS----------- 771

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                     +RR +P +  +           + RS        
Sbjct: 772 --------------------------RRRYIPELTSRNF---------NLRSFA------ 790

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M++             ++L VH
Sbjct: 791 ERTAMNTP------------------IQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVH 832

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P+ +      L   +M         +PLK +
Sbjct: 833 DELIFEAPEDEIKVLEKLVPEVMEHALE--LDVPLKVD 868


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 151/452 (33%), Gaps = 68/452 (15%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191
           L D +        R +G     D      + +RL          E++L +L         
Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLS 440

Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                +   G   DVA    L+  +  E  +L++E+  L  G   +    ++L+  LF E
Sbjct: 441 RVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499

Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             L     T+ T +R     VL + ++  P   ++  +R                     
Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359
                       ++         P    PR  R H   +Q  T      +SDP+   I  
Sbjct: 541 ------------TKLKNTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588

Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R   +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  
Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V P  V    R   K +   + Y   A    +++    +        +      E + 
Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            +    R   E   E   +  ++ T   R ++     ++RV  +     +        G 
Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A    K   V L    ++     ++L     L
Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604
                K +  +   L  GR   Y +   G  R   +   R +  RE           VQ 
Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757

Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            + D++   M        + G  ++L VHDE++ E P       + L    M      A 
Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816

Query: 660 GLPLKAE 666
            +PL+ E
Sbjct: 817 -VPLEVE 822


>gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118]
 gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118]
          Length = 892

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 89/516 (17%), Positives = 174/516 (33%), Gaps = 130/516 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             E  ++L+  +  E+ L  +   +   G  VD     T+   +    ++L+QE+ +   
Sbjct: 479 ELEENQQLDLYTKIERPLSIILANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEA- 537

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284
           G   +    ++L   LF +  L +   T+T       VL   + ++P    +   R  A 
Sbjct: 538 GEEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 597

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
             +   +  L++ ++                               +  ++H    Q +T
Sbjct: 598 IQSTY-IEGLLKVVSK------------------------------KDGKAHTRYTQTLT 626

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                 + DP+   I         +R   + S  G ++  +D + IE RVLA ++ ++  
Sbjct: 627 STGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNM 686

Query: 399 LKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            +AF+ G D++ +T  R FNV  P +VT + R   K +   + Y        +     G+
Sbjct: 687 QEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NIGI 743

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       + T      + D  +  +   E   E A E+ ++ T                
Sbjct: 744 SRKQAKQFIDT------YLDTFSGVKDYMEKIVEFAKENGYVETIFN------------- 784

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                   +RR +P +  +           + RS         R
Sbjct: 785 ------------------------RRRYLPDIKSRNF---------NLRSFA------ER 805

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
           + +N+                   +Q  + DI+   M+N             ++L VHDE
Sbjct: 806 TAMNSP------------------IQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDE 847

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           ++ E P  +      M+  +M S       +PLK E
Sbjct: 848 LIFEAPTEEIPLLEDMVPKVMDSAVK--LDVPLKVE 881


>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 897

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 90/490 (18%), Positives = 153/490 (31%), Gaps = 122/490 (24%)

Query: 173 KRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +RL PL    E+ L  +   +   G  VD      ++         L+  + +   G   
Sbjct: 490 ERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHA-AAGHPF 548

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +     +L   LF+E  L +    +T         +KL  Q                   
Sbjct: 549 NVASTRELAQVLFVELELPVVKRLKTGPSTDQDVLEKLAEQHALP--------------- 593

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                        R  L+    S+         P    P   R H    Q         +
Sbjct: 594 -------------RLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSS 640

Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I     +S  +R   +A  G +L+ AD + IE R+LA  + +   L+AF   E
Sbjct: 641 SDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRE 700

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A +F V P QVT DQR I KV+   + Y   A    +      L  +    ++
Sbjct: 701 DVHTRTAAETFGVPPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQ---RLDLPPSEAQGII 757

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                            R + +   +  
Sbjct: 758 DRYFT--------------------------------------------RYAGVRRYIEW 773

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A E+    G++  +  + R +P +  +          P+ R+         R+ +NT   
Sbjct: 774 AVEEARAKGESRTLFGRARTMPEIGARN---------PALRNAA------ERTAINTP-- 816

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         +    ++L VHDE+V E P+ 
Sbjct: 817 ----------------IQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPER 860

Query: 640 DEFNASMLYH 649
           +      L  
Sbjct: 861 ELAPVEALVR 870


>gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
 gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
          Length = 871

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 80/540 (14%), Positives = 166/540 (30%), Gaps = 137/540 (25%)

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
           +  + W             + ++ ++L+           E  L +    +   G  ++  
Sbjct: 436 DKADEWTKSCYEAYTAYAASEKLMEKLKEEQMDRLFLEIEMPLVFTLFDMEQAGVRIEAE 495

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259
                 + +  +  +L+ E+  +  G   +    ++L   LF +  +     T+T   T 
Sbjct: 496 ELKKYGEQLGEQIVQLESEIYEMA-GENFNINSPKQLGVILFEKLQMPHAKKTKTGYSTA 554

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL       P   ++   R      +    + L   +  DG                 
Sbjct: 555 ADVLEKLAPEFPIVDKILEYRQLTKLKSTYA-DGLANYIGPDG----------------- 596

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGK 374
                         R H   +Q IT      +++P+   I     +   +R   +  EG 
Sbjct: 597 --------------RIHGTFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPQEGY 642

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             + AD + IE R+LA  +G+   ++A+   +D++  T ++ F     +VT  QR   K 
Sbjct: 643 VFIDADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTDLQRRNAKA 702

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y   +    +      +     +  +++                          
Sbjct: 703 VNFGIVYGISSFGLSQ---DLSITRKEASQYIESYF------------------------ 735

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYMKK 553
                            + +  + +    L  +     E G A+ +  +RR +P +   K
Sbjct: 736 -----------------ETYPGIKKF---LDDSVTHAKEEGYAVTLFGRRRPIPEL---K 772

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
             N +                  R  +N                    +Q  + DI+   
Sbjct: 773 SSNFMQRNF------------GERVAMNAP------------------IQGTAADIMKIA 802

Query: 614 MMNA------TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           M+         +    ++L VHDE++ ET PD  E    +L   M +  S    +PL A+
Sbjct: 803 MIGVNRELKEKRMKSRMILQVHDELLIETHPDEIETVKEILKRQMETAAS--LDVPLIAD 860


>gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
          Length = 892

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 89/516 (17%), Positives = 174/516 (33%), Gaps = 130/516 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             E  ++L+  +  E+ L  +   +   G  VD     T+   +    ++L+QE+ +   
Sbjct: 479 ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEA- 537

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284
           G   +    ++L   LF +  L +   T+T       VL   + ++P    +   R  A 
Sbjct: 538 GEEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 597

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
             +   +  L++ ++                               +  ++H    Q +T
Sbjct: 598 IQSTY-IEGLLKVVSK------------------------------KDGKAHTRYTQTLT 626

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                 + DP+   I         +R   + S  G ++  +D + IE RVLA ++ ++  
Sbjct: 627 STGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNM 686

Query: 399 LKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            +AF+ G D++ +T  R FNV  P +VT + R   K +   + Y        +     G+
Sbjct: 687 QEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NIGI 743

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       + T      + D  +  +   E   E A E+ ++ T                
Sbjct: 744 SRKQAKQFIDT------YLDTFSGVKDYMEKIVEFAKENGYVETIFN------------- 784

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                   +RR +P +  +           + RS         R
Sbjct: 785 ------------------------RRRYLPDIKSRNF---------NLRSFA------ER 805

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
           + +N+                   +Q  + DI+   M+N             ++L VHDE
Sbjct: 806 TAMNSP------------------IQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDE 847

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           ++ E P  +      M+  +M S       +PLK E
Sbjct: 848 LIFEAPTKEIPLLEDMVPKVMDSAVK--LDVPLKVE 881


>gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 95/503 (18%), Positives = 162/503 (32%), Gaps = 130/503 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +   G  VD+       + V  E  +L +++     G   + R  ++L  
Sbjct: 471 EMPLIPVLADMEAAGIAVDLDAFAAFLREVQGELDRLTRDVYKAAGG-EFNIRSSQQLAE 529

Query: 242 WLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            LF   GL     T+    +T Q VL       P    +   R +  +     L  L   
Sbjct: 530 LLFGTLGLPTGGKTKGGQTSTAQDVLEKLSGRHPVVDAILEFR-KLEKLRSTYLEPLPRL 588

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++  GR+  T                                +Q+ T      +S+P+  
Sbjct: 589 VDGAGRIHTT-------------------------------FNQLATATGRLSSSNPNLQ 617

Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I     +   +R+C  A+ G +LV AD + +E RVLA M+ +   L AF  G D++  T
Sbjct: 618 NIPVRGDLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRT 677

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +  ++VA  QV+ DQR   K +   L Y  G    QK+A    + L      +      
Sbjct: 678 ASLLYDVAQDQVSTDQRRNAKTINFGLIYGMGP---QKLAQELRIPLTEAKAFI------ 728

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           E +       R   +     A E  ++                                 
Sbjct: 729 ERYFSKLQKLREFYDEAETTARELGYV--------------------------------- 755

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                 +A +RR +P ++                              NT  +   R   
Sbjct: 756 ----TTMAGRRRLLPEIHS----------------------------ENTQLKSQARR-- 781

Query: 593 YGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETP-DTDEFNAS 645
              +    ++Q  + DI+   M+              ++L VHDE++ E P D       
Sbjct: 782 ---QAINTLIQGSAADIIKLAMLAAHADPELRALNARLILQVHDELLLEVPADNAPAAGE 838

Query: 646 MLYHLMT--SNPSWAKGLPLKAE 666
            L  +M+       A  +PL  +
Sbjct: 839 RLAAIMSGVRPGGVALDVPLAVD 861


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 99/628 (15%), Positives = 193/628 (30%), Gaps = 146/628 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++   R V+   +   I +      L+LA     P+     +    K+ 
Sbjct: 363 LADETKKKSMFDAK--RAVVALKW-KGIDVRGVAFDLLLAAYLLNPAQDAGDIAAVAKMK 419

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNH-----REAWRLFGEYCKGDVTVTREIFKR 174
             +     E +  + KG       ++    H        W L   +   D     E  + 
Sbjct: 420 QYEAVRSDEAV--YGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF--MDDLRNNEQDQL 475

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           L  L   EQ L  +   +   G  VD      +   +  +   ++Q +     G   +  
Sbjct: 476 LTKL---EQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIEQRIYEHA-GQEFNIN 531

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +  L +   T+T       VL            + + R    +     +
Sbjct: 532 SPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQSTYI 590

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++ +  D                                + H   +Q +T      +
Sbjct: 591 EGLLKVVRPD------------------------------TGKVHTMFNQTLTQTGRLSS 620

Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           ++P+   I         +R   + SE    +  AD + IE RVLA +A +   ++AF+  
Sbjct: 621 AEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRD 680

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T    F+V+  +VT + R   K +   + Y         +A    +     A  
Sbjct: 681 LDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEF 737

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +      E +  +    R   EN  + A +  ++ T                        
Sbjct: 738 I------ERYFASFPGVRRYMENIVQEAKQKGYVTTLL---------------------- 769

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                           +RR +P +                R+   R     R+ +NT   
Sbjct: 770 ---------------HRRRYLPDITS--------------RNFNVRSF-AERTAMNTP-- 797

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+ + M++        +    ++L VHDE++ E P  
Sbjct: 798 ----------------IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKE 841

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E    ++  +M    S    +PLK +
Sbjct: 842 EIERLCELVPEVMEQAVS---SVPLKVD 866


>gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1]
 gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981]
 gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 876

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501]
          Length = 881

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 92/621 (14%), Positives = 180/621 (28%), Gaps = 152/621 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + +       +++      L                ++L         L    ++  +  
Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYL-----LDTNEKSTDIEG 416

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLS 179
                G   I        +     +  P   E   LF  +    V     +  +L   L+
Sbjct: 417 IAAHYGYNDIQ--SDETVYGKGAKKGLPEEEE---LFFAHLARKVAAINALTPKLSQELA 471

Query: 180 SK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            K         E  L  +   +   G  VD      +         +++Q++     G  
Sbjct: 472 DKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-GEE 530

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A   +
Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQS 590

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ + SDG++                               H    Q +T   
Sbjct: 591 TY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQTG 618

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++    A
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAA 678

Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F  G+D++ +T  R F +     VT + R   K +   + Y        +     G++  
Sbjct: 679 FLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGISRK 735

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T      + +     +   E     A +  ++                     
Sbjct: 736 AAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE-------------------- 769

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             +  +RR +P +    +  N  +     RS         R+ +
Sbjct: 770 -----------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERTAI 797

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634
           NT                   +Q  + DIL   M+   K          ++L VHDE+V 
Sbjct: 798 NTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVF 839

Query: 635 ETPDTDEFNASML-YHLMTSN 654
           E P+ +  +   L   +M   
Sbjct: 840 EVPEKELESLDKLVKEVMEQA 860


>gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11]
 gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46]
          Length = 876

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102]
 gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102]
          Length = 876

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 153/500 (30%), Gaps = 128/500 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +  ++   G  VD     +L+        KL++E+  L  G+  +    ++L  
Sbjct: 458 ETPLIPVLYSMEKWGIKVDKEYLKSLSDEFCERIKKLEEEIYELA-GMKFNLNSPKQLSE 516

Query: 242 WLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF    L      +T       VL +     P  I++                      
Sbjct: 517 VLFERLKLPSGKKGKTGYSTSSLVLQNLLNAHPIVIKIL--------------------- 555

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                     Q+    +         P     +  R H + +   T      +S+P+   
Sbjct: 556 ----------QYRELYKLKSTYIDAIPNLINSQTGRVHTKFNPTGTATGRISSSEPNLQN 605

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   IA +G   V  D + IE R++A ++ E   + AF+ GED++  T 
Sbjct: 606 IPIKSEEGRKIRRAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTA 665

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F V   +V    R+  K +   + Y   +    + AS T                  
Sbjct: 666 AEIFGVPEDEVDDLLRSRAKAVNFGIIYGISSFGLSETASITP----------------- 708

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             E+AE F     +++P        +    ++     R+K                    
Sbjct: 709 --EEAEKFIDSYFKHYPR-------VKLFIDKTIYEAREKL------------------- 740

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             K +  RKR    +  + K   N                   R  +N            
Sbjct: 741 YVKTLFGRKRYIPEIRSINKQVRNAY----------------ERIAINAP---------- 774

Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646
                   +Q  + DI+   M+   K          I+L +HDE++ E P+ + EF   M
Sbjct: 775 --------IQGTAADIIKLAMIEIYKEIEEKNLKSRILLQIHDELILEVPEEEMEFTPLM 826

Query: 647 LYHLMTSNPSWAKGLPLKAE 666
               M         +PL  E
Sbjct: 827 AKEKMEKVVE--LSVPLVVE 844


>gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
 gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
          Length = 887

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
          Length = 876

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNSKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 103/622 (16%), Positives = 183/622 (29%), Gaps = 144/622 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGE 114
           L E L +  V   +H+      VL A       +        LA     P   +      
Sbjct: 416 LGEWLADPAVPKASHDVK---AVLHALRGRGWTLAGLTSDTALAAYLAKPGQRSFDLADL 472

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLY---DRNKPNHREAWRLFGEYCKGDVTV---T 168
           AL+         +EL       +    L    +     H +A  +               
Sbjct: 473 ALRYLR------RELAMEGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELADALGAE 526

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
               ++   L   EQ L ++   +   G  VD A   +L      +  +  Q+  ++  G
Sbjct: 527 LAEKEQNGLLLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVI-G 585

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +    ++L+  LF E G+     T+T       +   L  Q    F   +   R A 
Sbjct: 586 KEINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHRDAT 645

Query: 289 ---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
              + ++ L++++ +DGR+  T                                 Q I  
Sbjct: 646 RLKVTVDGLLKSIAADGRIHTT-------------------------------YSQTIAA 674

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKL 399
                +++P+   +         +R+  +  +G  +L+ AD + IE R++A ++ +   +
Sbjct: 675 TGRLSSTEPNLQNVPIRTAAGRRIRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALI 734

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF +  D +  T ++ F V  A V+ +QRA  K M   L Y   A         +    
Sbjct: 735 EAFRSQRDFHSETASKVFGVDAADVSPEQRAKIKAMNYGLAYGLSAFGLSGQLRIS---- 790

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       E  +            
Sbjct: 791 -------------------------------------------TEEARGLMDDYFETFGG 807

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           + + L    +   ++G       RR                 LP                
Sbjct: 808 VRDYLRSIVDVARKDGYTATMLGRRRY---------------LP---------------D 837

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633
           L +  RQ  RE      L   I Q  + DI+   M+    A         ++L VHDE+V
Sbjct: 838 LTSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLRVHAALQAEGLRSRMLLQVHDELV 895

Query: 634 CETPDTDEFNASMLYHL-MTSN 654
            E  D +      L    M + 
Sbjct: 896 LEVADGERDAVDALVRREMAAA 917


>gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
 gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
          Length = 889

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 460 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 519

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 520 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 578

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 579 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 614

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 615 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 666

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 667 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 726

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 727 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 753

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 754 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 784

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 785 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 826

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 827 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 878


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 103/690 (14%), Positives = 214/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A    +    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELRIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   ++         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 113/673 (16%), Positives = 195/673 (28%), Gaps = 145/673 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSY 74
           L   G    A D      A    D      D    DP     L   L +       H + 
Sbjct: 350 LAVAGTHL-AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK 408

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
                +         +        LA     P        +  L    +   +  +    
Sbjct: 409 L---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLDDLALRYLRRELRAEN 460

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188
             +    L D       +A +         + +   + + L        LS  E  +  +
Sbjct: 461 PQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRV 520

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  VD+ L   L Q     + +   E      G   +    ++L+  LF E  
Sbjct: 521 LAGMEKAGIAVDLDLLSEL-QSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQ 579

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLR 305
           +     T+T       + + L  +    F   + A R A    + ++ L+ ++ SDGR+ 
Sbjct: 580 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRIH 639

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
            T                                +Q I       +++P+   I      
Sbjct: 640 TT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTEA 668

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   +  +G  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F V
Sbjct: 669 GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGV 728

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT + R   K M   L Y   A    +    +                        
Sbjct: 729 PIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIS------------------------ 764

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                   E  K+      +R   + + LH   EQ  ++G    
Sbjct: 765 -----------------------TEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTST 801

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              RR                 LP   S                + +  RE      L  
Sbjct: 802 VLGRRRY---------------LPELDS----------------SNRQVREAAERAALNA 830

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT 652
            I Q  + DI+   M+   KA         I+L VHDE++ E    +      L    M 
Sbjct: 831 PI-QGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMG 889

Query: 653 SNPSWAKGLPLKA 665
              ++   +PL+ 
Sbjct: 890 G--AYPLDVPLEV 900


>gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
 gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
          Length = 907

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 98/556 (17%), Positives = 185/556 (33%), Gaps = 89/556 (16%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVLKEALE 62
           ET    D    G+  Y  +  ++ F+F F+D         H      D V   V K+A+ 
Sbjct: 336 ETIVAFDTETTGLD-YI-NNKLVGFSFSFNDEEAYYVPFGHFYLGVADQVSKDVAKQAMR 393

Query: 63  NT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
              +  +V HN  F+   +            +  +++LA      SAL     + KL   
Sbjct: 394 RIFNSKVVGHNIKFDLHFVTRFLEEKDLPV-YCDSMILAWLINPESALSLDKLSDKLLGH 452

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR------------ 169
           +M   K+ +    KGE    +                 Y   D  +TR            
Sbjct: 453 EMVHFKDTVK---KGENFSTV----------ELDDACVYAAEDAFITRKLYKLFLKKLEL 499

Query: 170 -EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +    +E   + E    +    + + G  VD          V      L + +  L  G
Sbjct: 500 QDATHLIEEAKTVEIPFMHTLLKMEEEGIEVDTGFLEKFLVEVKETLEYLTKSIYELA-G 558

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL +   T+T     ++VLSS K   P   ++   R    +
Sbjct: 559 SEFNINSTQQLGNILFEKLGLPVGKKTKTGYSTNEKVLSSLKDKHPIIPKLLEYR-EVHK 617

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                ++ L++  N D                                R H    Q  T 
Sbjct: 618 LYSTYIDPLLKLANED-----------------------------EQHRIHTSFVQTGTA 648

Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + +P+   I     +   +R   +A EGKK +  D + +E R+LA  + +   + 
Sbjct: 649 TGRLSSKNPNLQNIPTRTPLGAKIRRGFVAGEGKKFIGIDYSQMELRLLAHFSQDPVLVN 708

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF   +D+++ T    F     +    +R I K +   L Y  G    +K++ T G+   
Sbjct: 709 AFMHDKDIHLQTAIVLFG---EEEAAHKRNIAKTVNFGLLYGMGP---KKLSDTLGITTK 762

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               ++      E++ ++ +  +    +  E + E  ++ T   R  + +    +     
Sbjct: 763 EAKEII------EKYFESFHTVKAYFRSIVESSKEKGYVETLLGR--RRYFDYENATPMY 814

Query: 521 WNELHQAFEQTIENGK 536
                +    ++  G 
Sbjct: 815 RAAYERESVNSVFQGS 830



 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
           R Y +           Y  +   ++ Q    D++   M          K    ++L +HD
Sbjct: 802 RRYFDYENATPMYRAAYERESVNSVFQGSVSDVIKLSMNKIHTIINEEKLQAKMLLQIHD 861

Query: 631 EIVCETPDT 639
           E++ E  + 
Sbjct: 862 ELIFEVDEK 870


>gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
 gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
          Length = 892

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 89/516 (17%), Positives = 174/516 (33%), Gaps = 130/516 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             E  ++L+  +  E+ L  +   +   G  VD     T+   +    ++L+QE+ +   
Sbjct: 479 ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEA- 537

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284
           G   +    ++L   LF +  L +   T+T       VL   + ++P    +   R  A 
Sbjct: 538 GEEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 597

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
             +   +  L++ ++                               +  ++H    Q +T
Sbjct: 598 IQSTY-IEGLLKVVSK------------------------------KDGKAHTRYTQTLT 626

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                 + DP+   I         +R   + S  G ++  +D + IE RVLA ++ ++  
Sbjct: 627 STGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNM 686

Query: 399 LKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            +AF+ G D++ +T  R FNV  P +VT + R   K +   + Y        +     G+
Sbjct: 687 QEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NIGI 743

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       + T      + D  +  +   E   E A E+ ++ T                
Sbjct: 744 SRKQAKQFIDT------YLDTFSGVKDYMEKIVEFAKENGYVETIFN------------- 784

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                   +RR +P +  +           + RS         R
Sbjct: 785 ------------------------RRRYLPDIKSRNF---------NLRSFA------ER 805

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
           + +N+                   +Q  + DI+   M+N             ++L VHDE
Sbjct: 806 TAMNSP------------------IQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDE 847

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           ++ E P  +      M+  +M S       +PLK E
Sbjct: 848 LIFEAPTEEIPLLEDMVPKVMDSAVK--LDVPLKVE 881


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 113/673 (16%), Positives = 196/673 (29%), Gaps = 145/673 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSY 74
           L   G    A D      A    D      D    DP     L   L +       H + 
Sbjct: 356 LAVAGTHL-AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK 414

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
                +         +        LA     P        +  L    +   +  +    
Sbjct: 415 L---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLDDLALRYLRRELRAEN 466

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188
             +    L D       +A +         + +   + + L        LS  E  +  +
Sbjct: 467 PQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRV 526

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              + + G  VD+ L   L Q     + +   E      G   +    ++L+  LF E  
Sbjct: 527 LAGMENAGIAVDLDLLSEL-QSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQ 585

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLR 305
           +     T+T       + + L  +    F   + A R A    + ++ L+ ++ SDGR+ 
Sbjct: 586 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRIH 645

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
            T                                +Q I       +++P+   I      
Sbjct: 646 TT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTEA 674

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   +  +G  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F V
Sbjct: 675 GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGV 734

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT + R   K M   L Y   A    +    +                        
Sbjct: 735 PIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIS------------------------ 770

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                   E  K+      +R   + + LH   EQ  ++G    
Sbjct: 771 -----------------------TEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTST 807

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              RR                 LP   S                + +  RE      L  
Sbjct: 808 VLGRRRY---------------LPELDS----------------SNRQVREAAERAALNA 836

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT 652
            I Q  + DI+   M+   KA         I+L VHDE++ E    +      L    M 
Sbjct: 837 PI-QGSAADIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALARDKMG 895

Query: 653 SNPSWAKGLPLKA 665
              ++   +PL+ 
Sbjct: 896 G--AYPLDVPLEV 906


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 74/504 (14%), Positives = 144/504 (28%), Gaps = 131/504 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  V+ A+   +   +  +  +L  ++  L  G   +    ++ 
Sbjct: 536 DVELPLAPILGAMEWTGIKVNPAVLQEMAGELGADIRRLQADIYDLA-GESFNINSTQQF 594

Query: 240 KTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF + GL +   T+T       VL       P   +V                    
Sbjct: 595 GKILFEKLGLPVIKRTKTGYSTDVEVLEELADRHPIVPKVLE------------------ 636

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                        +    +          P       R H   +Q +T      +++P+ 
Sbjct: 637 -------------YRQLMKLKSTYVEGLLPLIDGEDGRIHTSFNQAVTATGRLSSTEPNL 683

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R    A  +   L+ AD + IE R+LA ++G+     AF   +D++ 
Sbjct: 684 QNIPVRLEQGRRIRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHT 743

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V    VT + R   K +   + Y         ++   G+        +    
Sbjct: 744 RTASEVFGVPMENVTSEMRRRAKAVNFGIVYGISDF---GLSRDLGVLRAEARQYIDGYF 800

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                        R S +   + +   +
Sbjct: 801 --------------------------------------------DRYSGVKGYIDEIIAE 816

Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
               G    +  +RR +P +++K                  R     R+ +NT       
Sbjct: 817 ARRQGYVTTLLGRRRRLPDLFVKNK---------------IRQNFGERAAMNTP------ 855

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+              ++L VHDE++ E P  +   
Sbjct: 856 ------------IQGTAADIIKAAMVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSE 903

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
            A+++   M         +PL  +
Sbjct: 904 AAALIRETMEQTI--RLDVPLTVD 925


>gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987]
 gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A]
 gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85]
 gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
 gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
          Length = 904

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 158/516 (30%), Gaps = 129/516 (25%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       L   E  +  +   +   G  VD+ +   L      +     +    +
Sbjct: 489 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 548

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L+  LF E G+     T+T       + + L  +    F   + A R
Sbjct: 549 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 607

Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                 + ++ L++A+ +DGR+                               H   +Q 
Sbjct: 608 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 636

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396
           I       +++P+   I         +R   +  +G  +L+ AD + IE R++A ++G++
Sbjct: 637 IAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 696

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF TGEDL+    +R+F V   +VT + R   K M   L Y   A    +    + 
Sbjct: 697 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIST 756

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
              N                                                      +R
Sbjct: 757 EEANE-----------------------------------------------QMDAYFAR 769

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              + + L    E+  ++G       RR                 LP   S         
Sbjct: 770 FGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS--------- 805

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                  + +  RE      L   I Q  + DI+   M+   KA         ++L VHD
Sbjct: 806 -------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVHD 857

Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
           E++ E    +      L    M    ++   +PL+ 
Sbjct: 858 ELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 891


>gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii]
 gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii]
          Length = 881

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 113/627 (18%), Positives = 197/627 (31%), Gaps = 126/627 (20%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAV 112
           PQ L E L +        +       L     ++  P    +    L   N     L+A+
Sbjct: 355 PQPLVECLRDGSKLKAVQDLKPLLLALHRQGIDMPGPYFDTMVADYLLNPNRRAHTLEAI 414

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A+ L S ++  G+         E                 R  GE       V   + 
Sbjct: 415 --AMDLLSYQLGAGER--------EDTSKGPQSLFDVDEALVRRTGEAAAVTAKVAPMLR 464

Query: 173 KRLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           +RL+           E  L  +   I   G+ +DVA    L++ ++ E  ++   +  L 
Sbjct: 465 ERLKEQGSLSLFQDVEMPLVPVLAEIERNGFLLDVAGLQALSKELEHELEQMVGSIYRL- 523

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G   +    ++L T LF   GL     T+T       +  +L  Q              
Sbjct: 524 GGGEFNIGSPKQLATVLFETLGLKPLRKTKTGYSTDEDTLTQLASQHELPAQ-------- 575

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                L +   ++         P    P   R H  L+Q +   
Sbjct: 576 --------------------ILNYRTLTKLKSTYVDALPQLVNPETKRLHTSLNQTVAAT 615

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               ++DP+   I         +R   IA  G +L+ AD + +E R+LA ++ +   L+ 
Sbjct: 616 GRLSSTDPNLQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQVEPRILAHLSQDPRLLQV 675

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE GED+++ T    FN+   +VT+D R   K +   + Y         +AS  G+    
Sbjct: 676 FEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVFGIVYGISPF---GLASNIGVPQAD 732

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               ++T      + +     R + + + +      +  T   R                
Sbjct: 733 AKKYIET------FFEKFAAVRALMDRNIDDGKTKGYTTTILGR---------------- 770

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                RR +P +       +     PS R +        R  +N
Sbjct: 771 ---------------------RRPIPEL----QGGD-----PSQRGV------GERMAVN 794

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
           +  +         G   + I  A+   I     +        ++L VHDE++ E P+ + 
Sbjct: 795 SPIQ---------GSAADLIKVAM---IKVHQRLQNELPRCKMILQVHDELIFEVPEQEL 842

Query: 642 FNASMLYHLMTSNPSWAKGL--PLKAE 666
             A  L          A GL  PLK +
Sbjct: 843 EQAKQLVKAEMEATGAALGLSVPLKVD 869


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 119/707 (16%), Positives = 217/707 (30%), Gaps = 186/707 (26%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70
           D    G+   A    ++  +   D+                 +   LKE +++  V  VA
Sbjct: 362 DTETDGLD--ALCAGIVGMSLCADEKQAYFIPLPESAEEATHILSPLKELMQDERVLKVA 419

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGK 127
           HN+ F+  VL       +P  R +   +LA          +L  +  A  L        K
Sbjct: 420 HNAKFDLEVLTRY---GLPEARPLYDTMLAHYLIDADQGHSLDEL--AGGLLRYDTIRYK 474

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------L 178
           +L            L     P      +L  +Y   D  VT  +++ L           L
Sbjct: 475 DLS-----PLEIFALRTDVDP------KLLCDYASEDAYVTLRLYQALHKQLSPTEQRLL 523

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLE 237
           +  E  L Y+   +  RG  +D+       Q +     +L++E++S +  GL       +
Sbjct: 524 TEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPK 583

Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++   LF E   +     T+T    T +  L   + L P    +                
Sbjct: 584 QIGELLFDELQIMEKPRKTKTGSYVTNEETLLPLRSLHPVVALIL--------------- 628

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                            +  A +         P    P   + H   +Q +T      +S
Sbjct: 629 ----------------DYREARKLLNTYIDPLPKMCYP-DGKLHTSYNQAVTATGRLSSS 671

Query: 353 DPDPLQI-----ISDCVRSCVIASE--------------------GKKLVVADLAGIEAR 387
           +P+   I     +   +R   +A                      G  L+ AD + +E R
Sbjct: 672 NPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACAPVDHTHEKPIGAVLLSADYSQVELR 731

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           V+A ++ +   + +F +G+D++  T A+ F VAP +VT   R+  K     +        
Sbjct: 732 VMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI-------- 783

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G+     +  +                                +G A E +K
Sbjct: 784 ------NYGITPYGLSQRLNIP-----------------------------VGEAAELIK 808

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +    + +      +++A     E G    A  RR                 L + R+
Sbjct: 809 EYF-ATFTHIQAF---MNEAIALATERGYTETAFGRR---------------RQLRNLRT 849

Query: 568 LVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--- 623
                 GN  R+ +N                    +Q  + DI+   M+   +       
Sbjct: 850 ARGAQRGNAERNAINAP------------------IQGTAADIIKIAMIRVEEELTKQQL 891

Query: 624 ---IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAK-GLPLKAE 666
              +VL VHDE+V      +    + L        +W +  +PL  E
Sbjct: 892 RSYLVLQVHDELVLNVYLDELERVTALVREAMEC-AWPECSVPLVVE 937


>gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus]
 gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20]
 gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131]
 gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 876

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNSKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 94/491 (19%), Positives = 159/491 (32%), Gaps = 128/491 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   + + G  VD          V  E  ++ QE+     G   + R  ++L  
Sbjct: 614 ELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQ-FNIRSAQQLGE 672

Query: 242 WLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            LF   GL     T     TT Q  L       P    + + R +  +     L  L + 
Sbjct: 673 LLFGTLGLPTVGKTRGGQATTSQDALEKLSGRHPVVDLILDFR-KLEKLRSTYLEPLPKL 731

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++  GR+  T                                +Q+ T      +S+P+  
Sbjct: 732 VDDAGRIHST-------------------------------FNQLATATGRLSSSNPNLQ 760

Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I     +   +RSC  A+EG  LV AD + IE RVLA M+ +   L AF  G D++  T
Sbjct: 761 NIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRT 820

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
               ++ AP  VT DQR   K +   L Y  G    QK+     + +N            
Sbjct: 821 AGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGP---QKLGQELRITVNEA---------- 867

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                          ++  + +  +   +   ++ +  A  +  
Sbjct: 868 -------------------------------KQFIERYFSRLQHLRNFYDNVEAAARE-- 894

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           +     +A +RR +P ++                              NT  R   R   
Sbjct: 895 QGHVTTLAGRRRLLPEMHS----------------------------ENTQLRSQARR-- 924

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPD-TDEFNAS 645
              +    ++Q  + DI+   M+ A            ++L VHDE++ E P+   +    
Sbjct: 925 ---QAINTLIQGSAADIIKLAMLAAHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGE 981

Query: 646 MLYHLMTSNPS 656
            L  LM+    
Sbjct: 982 RLALLMSEVRP 992


>gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313]
          Length = 894

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 194/660 (29%), Gaps = 154/660 (23%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVE--LW--DCVH---DPVMPQVLKEALENTDVTI 68
           + K G           L A      PVE   W  D  +   +    +  K+ LE+ ++  
Sbjct: 332 IDKTG------SFSQKLAAIAI--SPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKK 383

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             H+       L    N  I  +      ++      PS  K      +L+ + +    +
Sbjct: 384 YGHDLKNFIVYLN---NRGIDFNGLAFDTMIGAYIINPS--KETYTISELAQEYLNLSVK 438

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------E 182
            +           L+   +P+          +      V+R+I   L+  + +      E
Sbjct: 439 AVEELAGKGKSFTLFKDMQPDVLSKTVGVYPHVIS--KVSRKIDSLLKENNQERLYYDIE 496

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L      +   G+ V+V      ++ +  +   + +E+ +L  G   +    ++L   
Sbjct: 497 LPLVRTLADMEYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLA-GEEFNINSPKQLGVI 555

Query: 243 LFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           LF + GL +   T+T       VL           ++   R                   
Sbjct: 556 LFEKLGLPIIKKTKTGYSTDAEVLEELSDRHEIVEKILEYRQL----------------- 598

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                          +              P   + H   +Q +T      +++P+   I
Sbjct: 599 --------------VKLKSTYAEGLLAVINPYTGKIHSSFNQTVTATGRISSTEPNLQNI 644

Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   I   E   L+ AD + IE RVLA +  ++  + AF   ED++ +T 
Sbjct: 645 PIKLEMGRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTA 704

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F +   +VT   R+  K +   + Y  G  +    A    ++       +      +
Sbjct: 705 ASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSL---AKDLKISRKEARAYID--GYLD 759

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            + + +        +  E   E  F+ T   R     R+    +                
Sbjct: 760 RYPNVKK----YMHDIVEEGKEKGFVTTMFMR-----RRYLPELKS-------------- 796

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                           R+   R  G  R  +NT           
Sbjct: 797 --------------------------------RNFNIRSFGE-RVAMNTP---------- 813

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + DI+   M+         K    ++L VHDE++ ET   ++     +
Sbjct: 814 --------IQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKI 865


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 95/627 (15%), Positives = 181/627 (28%), Gaps = 143/627 (22%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++      LK    +++        L+LA     P+     V    K+ 
Sbjct: 361 LADETKKKSMFDAKRAAVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 417

Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177
             +     + +  +  K         R+ P+                 + R     L   
Sbjct: 418 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 468

Query: 178 -----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +
Sbjct: 469 EQDGLLIKLEQPLATILAEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYELA-GQEFN 527

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L   LF +  L +   T+T         +KL P    V N              
Sbjct: 528 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEN-------------- 573

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                          L +    +              P   + H   +Q +T      ++
Sbjct: 574 --------------ILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALTQTGRLSSA 619

Query: 353 DPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           +P+   I         +R   + SE    +  AD + IE RVLA +A +   ++AF    
Sbjct: 620 EPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDL 679

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T    F+V+  +VT   R   K +   + Y         +A    +     A  +
Sbjct: 680 DIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEFI 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                 E +  +    +   E   + A +  ++ T   R     R+    ++        
Sbjct: 737 ------ERYFASFPGVKRYMETIVQEAKQKGYVTTLLHR-----RRYLPDITS------- 778

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                                                  R+   R     R+ +NT    
Sbjct: 779 ---------------------------------------RNFNVRSF-AERTAMNTP--- 795

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640
                          +Q  + DI+ + M++        +    ++L VHDE++ E P  +
Sbjct: 796 ---------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEE 840

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAE 666
                 L   +M      A  +PLK +
Sbjct: 841 MERLCQLVPEVMEQAV--ALRVPLKVD 865


>gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378]
          Length = 552

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 92/622 (14%), Positives = 185/622 (29%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           +D T V +++      +     +   I      ++LA     PS         A++    
Sbjct: 40  SDETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHDYT 96

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 97  EVETDEAIYGKGAKRSTPEENIVAAHLARKAVAIAELEKRLVDD----LEKNEQLALMED 152

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 153 LELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 211

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF +  L     T+T   T   VL S         ++   R                 
Sbjct: 212 VILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 256

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 257 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 300

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 301 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 360

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 361 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 417

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 418 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 454

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 455 ----------------------------------RNFNVRGF-AERTAMNTP-------- 471

Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M      + +      ++L VHDE++ E P+ +     
Sbjct: 472 ----------IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLE 521

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 522 EIVPDVMENAVE--LSVPLKVD 541


>gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262]
 gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262]
          Length = 875

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 92/622 (14%), Positives = 185/622 (29%), Gaps = 139/622 (22%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           +D T V +++      +     +   I      ++LA     PS         A++    
Sbjct: 363 SDETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419

Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++E  + +  +  K     E +   +      A     +    D     E  ++L  +  
Sbjct: 420 EVETDEAIYGKGAKRSTPEENIVAAHLARKAVAIAELEKRLVDD----LEENEQLALMED 475

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +  +G  VD      +   +      L++ + SL  G   +    ++L 
Sbjct: 476 LELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF +  L     T+T   T   VL S         ++   R                 
Sbjct: 535 VILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G+++ T        T +               + H   +Q +T      + DP+  
Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+V   +V    R   K +   + Y        +     G+        +     
Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                      +   ++    A E  ++ T   R     R+    +              
Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                             R+   R     R+ +NT         
Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794

Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M      + +      ++L VHDE++ E P+ +     
Sbjct: 795 ----------IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLE 844

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            +   +M +       +PLK +
Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864


>gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 876

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNSKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 876

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    F+ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V   +                                 
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKFAHK-------------------------------- 814

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
                +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 815 ----MKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
 gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
          Length = 879

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 95/520 (18%), Positives = 160/520 (30%), Gaps = 126/520 (24%)

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                +T   +     E  +  E  L  +   +   G  VDV +  T       +  + +
Sbjct: 459 ELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 518

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +    L      +    ++L+T LF    L     T+T         ++L  +    F +
Sbjct: 519 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 578

Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + A R        L  L++ +  DGR+                               H
Sbjct: 579 HLLAHREYQKMKTTLEGLIKTVQPDGRI-------------------------------H 607

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390
              +Q +       +++P+   I         +RS  I  +G  +L+ AD + IE RV+A
Sbjct: 608 TTFNQTVASTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMA 667

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++A++ GEDL+    +R F+V   QVT + R   K M   L Y   A    +
Sbjct: 668 HLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQ 727

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                                           +G      K   
Sbjct: 728 Q-----------------------------------------------LGIPAGEAKSIM 740

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                R   +   L +   Q  ++G       RR                 LP       
Sbjct: 741 ESYFERFGGVKKYLDEVVVQARKDGYTATLFGRRRY---------------LPE------ 779

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVL 626
                    LN+  R L RE      L   I Q  + DI+   M+   +A       ++L
Sbjct: 780 ---------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALQGMKSRVLL 828

Query: 627 TVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            VHDE+V E  P   +    +L   M S       +PL+ 
Sbjct: 829 QVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEV 866


>gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039]
          Length = 881

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 93/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           + +       +++      L                ++L          +    G A   
Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177
               ++  + +  +  K         +  P   E   LF  +    V     +  +L   
Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469

Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           L+ K         E  L  +   +   G  VD      +         +++Q++     G
Sbjct: 470 LADKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A  
Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ + SDG++                               H    Q +T 
Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++   
Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676

Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            AF  G+D++ +T  R F +     VT + R   K +   + Y        +     G++
Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  + T      + +     +   E     A    ++ T                 
Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKNQGYVET----------------- 770

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                               +  +RR +P +    +  N  +     RS         R+
Sbjct: 771 --------------------LYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
            +NT                   +Q  + DIL   M+   K          ++L VHDE+
Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKEAGLQATMLLQVHDEL 837

Query: 633 VCETPDTDEFNASML-YHLMTSN 654
           V E P+ +  +   L   +M   
Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860


>gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
 gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
          Length = 1020

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 109/623 (17%), Positives = 206/623 (33%), Gaps = 118/623 (18%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVG 113
            LK  LE+  +  +  N  F   +L       I +       +++ +          +++ 
Sbjct: 494  LKPVLESAGILKIGFNIKFVAVLLAQH---GITLANVDDIQLMSYALDAGRGSQKFESLA 550

Query: 114  EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            E   L+   + EG+ + +   K    +   DR   +  EA  +     +  V   R + +
Sbjct: 551  E-HVLAHAVLGEGELVGSGKNKLTFEQVAIDRATAHAAEAADVIHRLWR--VLKPRLVAE 607

Query: 174  RLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            R+  +    E+ L  +   +  RG  +D  +   L+        +++ EL+ L  G   +
Sbjct: 608  RMTAVYETLERPLVTVLAQMERRGIAIDRQVLSRLSGDFAQTAGRVEAELQELA-GEPIN 666

Query: 233  SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +++   LF + GL     T+T      +S      +                    
Sbjct: 667  VGSPKQIGDILFGKMGLPGGTKTKTGAWSTSASILDDLAE-------------------- 706

Query: 293  TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                    +   R  L++   S+         P    P+  R H       T      ++
Sbjct: 707  ------QGNDFARKILEWRQVSKLKSTYTDALPTYVNPQSQRVHTTYALAATTTGRLSSN 760

Query: 353  DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
            +P+   I         +R   IA+ G KLV AD + IE R+LA +A      +AF+ G D
Sbjct: 761  EPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLD 820

Query: 408  LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            ++  T +  F V    +  + R   K +   + Y   A     +A+  G+     +  +K
Sbjct: 821  IHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAF---GLANQLGIAREEASAYIK 877

Query: 468  TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                   +E       +M E                    + + +KH  V+ L+      
Sbjct: 878  -----RYFERFPGIRAYMDET-------------------REFCRKHGYVTTLF------ 907

Query: 528  FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                          ++   P +              S R+   R   N R          
Sbjct: 908  -------------GRKCHYPEIKASNA---------SVRAFNERAAINARL--------- 936

Query: 588  TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASM 646
                   G   + I +A++R    E  +   K    ++L VHDE++ E PD +      +
Sbjct: 937  ------QGTAADIIRRAMTR---VEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPV 987

Query: 647  LYHLMTSNPSWA--KGLPLKAEG 667
            + H+M   P  A    +PL  + 
Sbjct: 988  VQHVMQDAPFPAVLLSVPLHVDA 1010


>gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
 gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
          Length = 876

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92]
 gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054]
 gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
 gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
          Length = 904

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/516 (16%), Positives = 159/516 (30%), Gaps = 129/516 (25%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       L   E  +  +   +   G  VD+ +   L      +     +    +
Sbjct: 489 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 548

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L+  LF E G+     T+T       + + L  +    F   + A R
Sbjct: 549 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 607

Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                 + ++ L++A+ +DGR+                               H   +Q 
Sbjct: 608 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 636

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396
           I       +++P+   I      S  +R   +  +G  +L+ AD + IE R++A ++G++
Sbjct: 637 IAATGRLSSTEPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 696

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF TGEDL+    +R+F V   +VT + R   K M   L Y   A    +    + 
Sbjct: 697 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIST 756

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
              N                                                      +R
Sbjct: 757 EEANE-----------------------------------------------QMDAYFAR 769

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              + + L    E+  ++G       RR                 LP   S         
Sbjct: 770 FGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS--------- 805

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                  + +  RE      L   I Q  + DI+   M+   KA         ++L VHD
Sbjct: 806 -------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVHD 857

Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
           E++ E    +      L    M    ++   +PL+ 
Sbjct: 858 ELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 891


>gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
 gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
 gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503]
 gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A]
 gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85]
 gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
 gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
 gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
 gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
 gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
 gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv]
 gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
 gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
 gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
 gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
 gi|740010|prf||2004291B DNA polymerase I
          Length = 904

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 158/516 (30%), Gaps = 129/516 (25%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       L   E  +  +   +   G  VD+ +   L      +     +    +
Sbjct: 489 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 548

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L+  LF E G+     T+T       + + L  +    F   + A R
Sbjct: 549 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 607

Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                 + ++ L++A+ +DGR+                               H   +Q 
Sbjct: 608 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 636

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396
           I       +++P+   I         +R   +  +G  +L+ AD + IE R++A ++G++
Sbjct: 637 IAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 696

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF TGEDL+    +R+F V   +VT + R   K M   L Y   A    +    + 
Sbjct: 697 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIST 756

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
              N                                                      +R
Sbjct: 757 EEANE-----------------------------------------------QMDAYFAR 769

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              + + L    E+  ++G       RR                 LP   S         
Sbjct: 770 FGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS--------- 805

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                  + +  RE      L   I Q  + DI+   M+   KA         ++L VHD
Sbjct: 806 -------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVHD 857

Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
           E++ E    +      L    M    ++   +PL+ 
Sbjct: 858 ELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 891


>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
           pallidum]
          Length = 997

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/646 (15%), Positives = 188/646 (29%), Gaps = 155/646 (23%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D  +   +   L+    +  +T+V HN  F+  V+      +        T+V A     
Sbjct: 467 DPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDP 526

Query: 106 PSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                     A      +    +E++A             + +      +     Y   D
Sbjct: 527 DRGTYGMDVLAASFFQIRTITFEEVVA-------------KGQTFAHVPYECAVRYAAED 573

Query: 165 VTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             +T  ++  L+               E  L  +   + + G  +   +   L +     
Sbjct: 574 ADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDL 633

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271
             + + ++ SL  G   +    ++L+T LF E  L               VL    +  P
Sbjct: 634 IQQYEHDIFSLA-GHEFNIGSPKQLQTVLFQELHLPPGKKNTQGYSTDHSVLKKLARKHP 692

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A ++   R   S+       +L +  +  GR+                           
Sbjct: 693 IAEKILLFR-DLSKLRSTYTESLAKLADQTGRV--------------------------- 724

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
               H    QI T      + +P+   I         +R    A+ G +L+ AD   IE 
Sbjct: 725 ----HTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIEL 780

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
             LA ++ ++  L AF    D++  T A  FNV+   V    R I K +   + Y   A 
Sbjct: 781 VALAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAF 840

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++    ++       +                                        
Sbjct: 841 ---RLSDELKISQKEAQSFIY--------------------------------------- 858

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
              + + +  V     ++    EQT + G    +A +RR +  +  +             
Sbjct: 859 --RYFETYPGVYAFSTQV---AEQTRKTGYVTSLAGRRRYIRTIDSRNT----------- 902

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-- 623
                      R  LNT                   +Q+ + DI+   M+   +A     
Sbjct: 903 ----LERARAERMALNTQ------------------IQSSAADIVKIAMIAIQRAFARRP 940

Query: 624 ----IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
               ++L VHDE++ E P  +      +    M         +PL+
Sbjct: 941 LRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LSIPLR 984


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 106/692 (15%), Positives = 219/692 (31%), Gaps = 164/692 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--MPQV 56
             + ID ET S +D+      GI    ++       +     P+E    ++     + Q 
Sbjct: 341 KYISIDTET-SSLDIYTARLIGISISFKEFE----GYYI---PIEARGKIYIEKHYIIQK 392

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
                E ++  I+  N  F+  +LK      IP   +  T++ A      S +     A 
Sbjct: 393 FNNFFE-SNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAE 449

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K    K  + +++I    K +    +          +  +   Y   D  +T  +F    
Sbjct: 450 KYLMHKNIKYEDVIQ---KNDNFAGI----------SLEMATSYSSEDADITFRLFNVFS 496

Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                      +   E     +   + + G  +D        + +  E   ++ E+   +
Sbjct: 497 KKLKEDSLDKLMHEIEMPFNNVIIEMEENGIYLDREYLKEYGKELGKELELIETEIIK-S 555

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            G+  +    +++   LF +  L L +  +   T  +VL S +        +  +R  A 
Sbjct: 556 IGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLRGQHESIENLIKHRQIAK 615

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
             +    + L+E +N                               + +R H    Q  T
Sbjct: 616 LKSTYT-DNLIELINY------------------------------KTNRLHTNFIQTKT 644

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + +P+   I         +R       G   + AD + IE  +LA ++ ++  +
Sbjct: 645 ATGRVTSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLI 704

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAFE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A   G+  
Sbjct: 705 KAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT- 760

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                           E+A+ F     +++                          ++ E
Sbjct: 761 ---------------KEEAKGFIDSYFDSY-------------------------PKIKE 780

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                     +  +   ++         S   L  R      + 
Sbjct: 781 F------------------------IINQINFVRNTGY------SETILKRRRYIKEINS 810

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
            N   R      +       +I+Q  + DI+   M+         K    I+L VHDE++
Sbjct: 811 NNYLERSAAERIS-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEML 865

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            E+P  +E     +  +M    ++    PL+A
Sbjct: 866 IESPIKEENEVKKILKIMMET-AYTLTPPLRA 896


>gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
 gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
          Length = 903

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 158/516 (30%), Gaps = 129/516 (25%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       L   E  +  +   +   G  VD+ +   L      +     +    +
Sbjct: 488 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 547

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L+  LF E G+     T+T       + + L  +    F   + A R
Sbjct: 548 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 606

Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                 + ++ L++A+ +DGR+                               H   +Q 
Sbjct: 607 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 635

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396
           I       +++P+   I         +R   +  +G  +L+ AD + IE R++A ++G++
Sbjct: 636 IAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 695

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF TGEDL+    +R+F V   +VT + R   K M   L Y   A    +    + 
Sbjct: 696 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIST 755

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
              N                                                      +R
Sbjct: 756 EEANE-----------------------------------------------QMDAYFAR 768

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              + + L    E+  ++G       RR                 LP   S         
Sbjct: 769 FGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS--------- 804

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                  + +  RE      L   I Q  + DI+   M+   KA         ++L VHD
Sbjct: 805 -------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVHD 856

Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
           E++ E    +      L    M    ++   +PL+ 
Sbjct: 857 ELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 890


>gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
 gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
          Length = 887

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 149/624 (23%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
           E + L+       P +            G    L+ +     +++  +  G+        
Sbjct: 368 EESALQTWLESAAPKYLHSAKETFHMLRGRGITLRGIAHDTAIAAYLLRPGQRTYDL--- 424

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------E 182
           G+ ++    R      +   L  E     V     I +  E L+               E
Sbjct: 425 GDVYQRHLQRQLTTGSDQLSLLDEDTTL-VDSAAAILELAEKLTEDLRAINSYELYADLE 483

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   + D G  VD+ +     + +  + T  +    SL      +    ++L   
Sbjct: 484 LPLVTILAEMEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLSSPKQLSVV 543

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMN 299
           LF +  L     T+T         + L  +    F +++ A R        +  L++ ++
Sbjct: 544 LFDKLELPKTKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKSTIEGLIKTVH 603

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            DGR+  T                                +Q +       +++P+   I
Sbjct: 604 DDGRIHTT-------------------------------FNQTVASTGRLSSTEPNLQNI 632

Query: 360 I-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +RS     +G + L+ AD + IE RV+A ++ +   ++A++ GEDL+    
Sbjct: 633 PVRTEAGRRIRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDLHNFVG 692

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +R F+V    VT + R   K M   L Y   A     +++  G+                
Sbjct: 693 SRVFDVPIDDVTPELRRRVKAMSYGLVYGLSAY---GLSNQLGIPAGEA----------- 738

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            KK       R   +   L +  EQ   
Sbjct: 739 ---------------------------------KKIMESYFQRFGGVKRYLDEVVEQARR 765

Query: 534 NG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           +G  + +  +RR +P +                                T+  ++ RE  
Sbjct: 766 DGYTSTVFGRRRYLPEL--------------------------------TSDNRVARENA 793

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYD----------IVLTVHDEIVCE-TPDTDE 641
               L   I Q  + DI+   M+    A  D          ++L VHDE+V E  P   E
Sbjct: 794 ERAALNAPI-QGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIAPGELE 852

Query: 642 FNASMLYHLMTSNPSWAKGLPLKA 665
              +++   M    +    L + A
Sbjct: 853 QVQAIVEEEMDRAITLRVPLEVSA 876


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/513 (17%), Positives = 162/513 (31%), Gaps = 129/513 (25%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              E  +    + + E  L  +   +   G  V+ A      + V      ++Q +  + 
Sbjct: 465 AKLEEEELTHLMKTVELPLVEVLAAMEQNGVYVNRAHLAEKTEEVADRLQTIEQSIYEMA 524

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L T LF E  L +   T+T       VL S +   P   Q+   R+  
Sbjct: 525 -GHTFNLNSPKQLGTVLFEELDLPVRKKTKTGYSTNAEVLESLRLEHPIVEQILAYRL-- 581

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                         S+                  R H   +Q +
Sbjct: 582 -----------------------------WSKLKSTYLDGITGLIRTDTGRVHTSFNQTV 612

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQW 397
           T      +SDP+   I         +R+     EG   L+ AD + IE R+LA M+G++ 
Sbjct: 613 TATGRLSSSDPNLQNIPVRTEEGRMIRALFEPGEGYDYLLSADYSQIELRLLAHMSGDEN 672

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            +  F+ G+D++  T A  F +   +VT + R   K +   + Y         +A    +
Sbjct: 673 FIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNFGIVYGISDF---GLARNLHI 729

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       +        + +     R   +     A E  ++ T                
Sbjct: 730 SRKEAGDYI------SRYFERYPGVRAFMDKVVAEAHETGYVTT---------------- 767

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                +  +RR++P +   K +N    ML              R
Sbjct: 768 ---------------------MFGRRRELPAI---KSRNFNQRML------------AER 791

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDE 631
             +NT                   +Q  + D++   M+       +AG    I+L VHDE
Sbjct: 792 MAMNTP------------------IQGTAADVIKLAMIAAYHRLKEAGVKSRILLQVHDE 833

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPL 663
           +V E  +++ +   ++L   M      A  +PL
Sbjct: 834 LVLEVVESELDVVQAILRESMEHVV--ALSVPL 864


>gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44]
 gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44]
          Length = 877

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/539 (15%), Positives = 158/539 (29%), Gaps = 135/539 (25%)

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           L  RF          D    +  +A     E             +      + E  L + 
Sbjct: 430 LTERFSVPSIANGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 485

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  +D             E T++ +E+  L  G   +    ++L   LF +  
Sbjct: 486 LVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKLN 544

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +  +P   ++   R                         
Sbjct: 545 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------------------- 579

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                   ++               +  R H   +Q++T      +SDP+   I      
Sbjct: 580 ------SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 633

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R+      G   LV AD + IE R+LA ++G++  +KAF  G+D++  T A     
Sbjct: 634 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 693

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           +  +VT ++R+  K +   + Y         ++   G+      + +             
Sbjct: 694 SQDEVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 741

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                              SR  ++   + +  ++  E GK   
Sbjct: 742 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 766

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598
              R+                 LP   S  + R     R+ +NT                
Sbjct: 767 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 796

Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHLM 651
              +Q  + DI+   M    +          ++L VHDE+V E  +++      +  L+
Sbjct: 797 ---IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSE---LEAIEELL 849


>gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15]
 gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15]
          Length = 881

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 92/621 (14%), Positives = 180/621 (28%), Gaps = 152/621 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + +       +++      L                ++L         L    ++  +  
Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYL-----LDTNEKSTDIEG 416

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLS 179
                G   I        +     +  P   E   LF  +    V     +  +L   L+
Sbjct: 417 IAAHYGYNDIQ--SDETVYGKGAKKGLPEEEE---LFFAHLARKVAAINALTPKLSQELA 471

Query: 180 SK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            K         E  L  +   +   G  VD      +         +++Q++     G  
Sbjct: 472 DKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-GEE 530

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A   +
Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQS 590

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ + SDG++                               H    Q +T   
Sbjct: 591 TY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQTG 618

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++    A
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAA 678

Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F  G+D++ +T  R F +     VT + R   K +   + Y        +     G++  
Sbjct: 679 FLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGISRK 735

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T      + +     +   E     A +  ++                     
Sbjct: 736 AAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE-------------------- 769

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             +  +RR +P +    +  N  +     RS         R+ +
Sbjct: 770 -----------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERTAI 797

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634
           NT                   +Q  + DIL   M+   K          ++L VHDE+V 
Sbjct: 798 NTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVF 839

Query: 635 ETPDTDEFNASML-YHLMTSN 654
           E P+ +  +   L   +M   
Sbjct: 840 EVPEKELESLDKLVKKVMEQA 860


>gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 462

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/462 (16%), Positives = 139/462 (30%), Gaps = 68/462 (14%)

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQ 183
           K         +  P      +   +Y   D  +T  +   L P               E 
Sbjct: 4   KYVDLVGKGAKQIPFSHVGVQEATQYAAEDADITLRLHCVLAPKLLAEPILERVYREIEM 63

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  + + I   G  +D    +  +  +        Q+   L  G   +    ++L+  L
Sbjct: 64  PLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMDLA-GRHFNLDSPKQLQVLL 122

Query: 244 FLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           F E  L +         +T +  L +                                  
Sbjct: 123 FDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP-------------------------- 156

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                R  L++   ++         P    P   R H    Q         +SDP+   I
Sbjct: 157 -----RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDPNLQNI 211

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   +A  G+KL+  D + IE R++A ++G+   + AFE+G D++    A
Sbjct: 212 PIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAA 271

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F     +VT ++R   K +   L Y   A     +A   G++       +        
Sbjct: 272 EVFGRGIDEVTPNERRAAKAINFGLIYGMSAF---GLARQLGISRGEAQDYIA------L 322

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           + D  +  R   EN  + A +  ++ T   R +       S          +A       
Sbjct: 323 YFDRFSGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIASGNQTQRAGAERAAINAPMQ 381

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           G A    KR  V +         L +     R+L+   V + 
Sbjct: 382 GTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHDE 417



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 18/172 (10%)

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN- 556
             G   + V    R+    ++        AF    + G  I   + +D   +Y  +    
Sbjct: 273 VFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLG--ISRGEAQDYIALYFDRFSGV 330

Query: 557 --NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILA 611
              +       R   Y + V   R YLN+     Q  R            +Q  + DI+ 
Sbjct: 331 RDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA-AINAPMQGTAADIIK 389

Query: 612 EGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN 654
             M+           +    ++L VHDE+V E  +         +   M + 
Sbjct: 390 RAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 441


>gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635]
 gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635]
          Length = 876

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397]
 gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397]
          Length = 877

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455]
 gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455]
          Length = 870

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 441 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 500

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 501 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 559

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 560 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 595

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 596 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 647

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 648 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 707

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 708 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 734

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 735 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 765

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 766 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 807

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 808 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 859


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/625 (14%), Positives = 195/625 (31%), Gaps = 141/625 (22%)

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALK 117
           E+       +++      L+      + +      L +A     PS     + ++ +   
Sbjct: 363 EDETKKKTVYDAKRSEVSLRHH---GVHLKGADFDLYIASYLINPSQTIEDMASIAKNHG 419

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            ++ + +E     A + KG       ++    H           K  +    +  ++ E 
Sbjct: 420 YNAIQSDE-----AFYGKGAKRRIPEEKELAGHLARKAAALMTLKEKLDSELKENQQSEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   +   G  VD+    T+ Q +  +  ++++ +  L  G   +    +
Sbjct: 475 FYDLEMPLSLILADMESTGIKVDLERLKTMGQDLLSKLDEIEKRIHELA-GEAFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF + GL     T+T       VL   +        + + R    +     +  L
Sbjct: 534 QLGVILFEKLGLPAIKKTKTGYSTSADVLEKLENSHEIIRDILHYRQL-GKLQSTYIEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ +N +                                + H   +Q +T      ++DP
Sbjct: 593 LKVVNYE------------------------------TGKVHTRFNQALTQTGRLSSTDP 622

Query: 355 DPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   + SE G  +  AD + IE RVLA +A ++  ++AF    D+
Sbjct: 623 NLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADYSQIELRVLAHIANDEKLIEAFIEDMDI 682

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T    F+V   +VT + R   K +   + Y        +   + G+        +  
Sbjct: 683 HTKTAMEVFHVNANEVTSNMRRHAKAVNFGIVYGISDYGLSQ---SLGITRKEAGKFID- 738

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 + ++    +   ++    A +  ++ T   R     R+    ++          
Sbjct: 739 -----RYLESYPGVKQYMDDIIHDAKQKGYVSTLLHR-----RRYLPEITS--------- 779

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                                                R+   R     R+ +NT      
Sbjct: 780 -------------------------------------RNFNLRSF-AERTAMNTP----- 796

Query: 589 REYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEF 642
                        +Q  + DI+ + M      +   +    ++L VHDE++ E P+ +  
Sbjct: 797 -------------IQGSAADIIKKAMIDMADRLRKEELKARLLLQVHDELIFEVPEDEIE 843

Query: 643 NASMLY-HLMTSNPSWAKGLPLKAE 666
               +   +M +       +PLK +
Sbjct: 844 TLKKIVPDVMENAVE--LKVPLKVD 866


>gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564]
 gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564]
          Length = 877

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 431 GVKKALPEREKFLEHLARKLAILVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    D+   KL QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 491 GITVKKETLLEMQAENDLVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +     
Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERSED 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 857

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 858 Q--LSVPLIAD 866


>gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 876

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELSLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    F+ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 95/630 (15%), Positives = 185/630 (29%), Gaps = 149/630 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++      LK    +++        L+LA     P+     V    K+ 
Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419

Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
             +     + +  +  K         R+ P+                 + R     L   
Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470

Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              E L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +
Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYELA-GQEFN 529

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T       VL            + + R    +    
Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ ++ D                                + H   +Q +T     
Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +++P+   I         +R   + SE G  +  AD + IE RVLA +A +   ++AF 
Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+V+  +VT   R   K +   + Y         +A    +     A
Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +      E +  +    +   E   + A +  ++ T                      
Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLL-------------------- 769

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                             +RR  P +                R+   R     R+ +NT 
Sbjct: 770 -----------------HRRRYFPDITS--------------RNFNVRSF-AERTAMNTP 797

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++        +    ++L VHDE++ E P
Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
             +      L   +M         +PLK +
Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/593 (15%), Positives = 171/593 (28%), Gaps = 141/593 (23%)

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            ++++   P  L         + Q + +   L     +                E     
Sbjct: 386 AISKAAADPKELYKYMMGQGKNLQGITDDPALAGYLYEPGASGYGIQ---ALGEEFLPAA 442

Query: 158 GEYCKGDVTVTR-EIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                 D       + ++LE           E  L      +   G  VD A+   +   
Sbjct: 443 SGEGAQDTAALVPVLREKLEERGLTRLYEDIELPLTENLAEMEFTGIAVDQAMLDEVTGE 502

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNK 267
           +  +   L+Q+      G   +    ++L   LF + GL +   T+T       VL + +
Sbjct: 503 MTKKVQALEQQAWDQA-GEQFNLNSPKQLGVLLFEKLGLPIIKKTKTGYSTDVSVLEALQ 561

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    + + R                                 S+          P 
Sbjct: 562 GEHPLIETLISYRQL-------------------------------SKLLSTYLLGLHPL 590

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADL 381
             P   R H   +Q+ T      +++P+   I         +R   +  EG   L+  D 
Sbjct: 591 INPATGRIHTHFNQMATVTGRLSSTEPNLQNIPTRTEVGKRMREMFVPGEGYDLLMSCDY 650

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + +E RV+A +A ++  L +F  G+D++  T +  F V   QVT   R+  K +   + Y
Sbjct: 651 SQVELRVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIY 710

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                    +A   G+     A                                      
Sbjct: 711 GISDF---GLARQLGVPRGEAA-------------------------------------- 729

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                 +      +R + +   + +  ++  E G       RR                 
Sbjct: 730 ------QYIESYFARYTGVKAYMEREKQKAREMGYVETLFGRRRY--------------- 768

Query: 562 LPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           LP   +  + R     R+ +NT                   +Q  + DI+   M+   + 
Sbjct: 769 LPDINAKNFNRRSFAERTAINTP------------------IQGTAADIIKVAMLKVARN 810

Query: 621 G------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                    ++L VHDE+V E P  ++     ++   M      A  +PL A+
Sbjct: 811 LKEARVKSRVLLQVHDELVLEIPAAEQETVGKIVKETMEHAVDLA--VPLVAD 861


>gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
 gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
          Length = 887

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 123/665 (18%), Positives = 201/665 (30%), Gaps = 158/665 (23%)

Query: 25  AEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
           A D      A      +    L D + D   P+ L EA         A         + A
Sbjct: 344 ASDGECAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWA---------IHA 387

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                  +        LA     P        +  L    +   K  +     G+    L
Sbjct: 388 LRGRGWTLGGLTSDTALAAYLVRPGQ-----RSFNLDDLSLRYLKRELRAETSGQEQLSL 442

Query: 143 YDRNKPNHREAWRLFGEYC------KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            D  +    EA                 +    E  +    LS  E  L      I   G
Sbjct: 443 LDDTEQLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATG 502

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD A  H L      +          +    + +    ++L+  LF E  +     T+
Sbjct: 503 IAVDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTK 561

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313
           T       + + L  +    F   + A R A    + ++ L++A+  DGR+  T      
Sbjct: 562 TGYTTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTT------ 615

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                     +Q +       ++DP+   I         +R   
Sbjct: 616 -------------------------FNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGF 650

Query: 369 IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  +G   L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT +
Sbjct: 651 VVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPE 710

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K M   L Y   A     +AS   ++                             
Sbjct: 711 LRRRVKAMSYGLAYGLSAY---GLASQLKISTEEA------------------------- 742

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      +R   + + LH   EQ  ++G       RR   
Sbjct: 743 -------------------KQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLYGRRRY- 782

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                LN+  RQ  RE      L   I Q  + 
Sbjct: 783 --------------LP---------------DLNSDNRQ-RREVAERAALNAPI-QGTAA 811

Query: 608 DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKG 660
           DI+   M+N  KA  D      ++L VHDE+V E   ++ E   +++   M +       
Sbjct: 812 DIIKVAMINVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LS 869

Query: 661 LPLKA 665
           +PL  
Sbjct: 870 VPLDV 874


>gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON]
 gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON]
          Length = 850

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 104/649 (16%), Positives = 205/649 (31%), Gaps = 147/649 (22%)

Query: 32  LFAFGFD-----DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
           L  +  D     +  +++++      +P ++   L N  V    +++   R ++      
Sbjct: 324 LCVYSNDVLSLSEDELKVYNISVKQSVPDIVAAVLSNPKVHKHVYDAK--RLIVSMN-KS 380

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            I +       ++A     P             SQ   + K L+ ++          D +
Sbjct: 381 HINVKGIDFDAMIAAYLLDP-------------SQSNYDIKRLVKQY-------LEIDDD 420

Query: 147 KPNHRE-AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
             +H    WRL             E+          E  L  +   +   G+ VDV +  
Sbjct: 421 AASHAGYLWRLMNIMLPQ--IKENEMNALFY---DIEMPLTRVLADMEINGFTVDVQMLK 475

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
            L    +     L +E+ +L  G   +    ++L   LF +  L +   T+T     +  
Sbjct: 476 ELADDFERMIDGLTKEIYALA-GEEFNINSPKQLGAILFEKLKLPVGKKTKTGYSTDIEV 534

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K            +++     V K+                + +   ++          
Sbjct: 535 LK------------QLQLQHDIVPKI----------------IDYRQLTKLKSTYIDGLM 566

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVA 379
               P   + H + +Q +T      +++P+   I     +   +R   + S     L+ A
Sbjct: 567 NMADPITHKIHSKFNQTVTVTGRISSTEPNLQNIPVKTELGHQIRKAFVPSSSDYLLLDA 626

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA M+ +Q  + AF  G+D++  T +  F +   QVT   R+  K +   +
Sbjct: 627 DYSQIELRVLAHMSQDQNMIDAFLKGQDIHARTASEVFGIPLEQVTPLMRSRAKAVNFGI 686

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y         +A   G++ +     ++   A        N  R   +   + A +  ++
Sbjct: 687 VYGISDF---GLARNIGISRSEAKQYIEQYFARY------NGVRRFMDETIQFAKKHGYV 737

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T  +R ++   +  S    + +   +A   T   G A    K+  V +           
Sbjct: 738 TTMFKR-RRYLPELASSNRTVRSFGERAAMNTPIQGTAADIIKKAMVDI----------- 785

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                     Y  +  N                Y  KL   I+Q                
Sbjct: 786 ----------YNALKENE---------------YRSKL---ILQ---------------- 801

Query: 620 AGYDIVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                   VHDE++ E    + DE    ++   M         +PL A+
Sbjct: 802 --------VHDELIIEVHRDEVDEIR-DLVKDKMEGVVK--MDVPLVAD 839


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/690 (14%), Positives = 214/690 (31%), Gaps = 160/690 (23%)

Query: 2   ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID ET S +D       GI    ++       +              + ++ +   
Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A K 
Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
              K  + +++I              +N      +  +   Y   D  +T  +F      
Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498

Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                  + +   E     +   + + G  +D        + +  E   ++ E+   + G
Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +  +    +++   LF +  L L +  +   T  +VL S ++       +   R  A   
Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +    + L+E +N                               + +R H    Q  T  
Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEILIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +   + Y+       ++A    +    
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELRIT--- 760

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                         E+A+ F     +++                          ++ E  
Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                   +  +   ++         S   L  R      +  N
Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              R              +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +P  +E     +  +M    ++   LPL+A
Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
 gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
          Length = 873

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/539 (15%), Positives = 158/539 (29%), Gaps = 135/539 (25%)

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           L  RF          D    +  +A     E             +      + E  L + 
Sbjct: 426 LTERFSVPSIANGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 481

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  +D             E T++ +E+  L  G   +    ++L   LF +  
Sbjct: 482 LVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKLN 540

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +  +P   ++   R                         
Sbjct: 541 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------------------- 575

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                   ++               +  R H   +Q++T      +SDP+   I      
Sbjct: 576 ------SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 629

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R+      G   LV AD + IE R+LA ++G++  +KAF  G+D++  T A     
Sbjct: 630 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 689

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           +  +VT ++R+  K +   + Y         ++   G+      + +             
Sbjct: 690 SQDEVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 737

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                              SR  ++   + +  ++  E GK   
Sbjct: 738 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 762

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598
              R+                 LP   S  + R     R+ +NT                
Sbjct: 763 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 792

Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHLM 651
              +Q  + DI+   M    +          ++L VHDE+V E  +++      +  L+
Sbjct: 793 ---IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSE---LEAIEELL 845


>gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200]
          Length = 877

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
 gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
          Length = 875

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/628 (15%), Positives = 202/628 (32%), Gaps = 137/628 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K  LE+        ++   R ++   +N  I +      L+LA     P+       A+
Sbjct: 356 FKRWLEDEQCKKSVFDAK--RAIVALKWN-GIELKGVDFDLLLAAYLLNPTDANGDVAAV 412

Query: 117 KLSSQ--KMEEGKELIARFCKGE-THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             + Q   ++  +E+  +  K       +   +     +A     E          +  +
Sbjct: 413 AKTKQYTDVQSDEEVYGKGAKQAIPPTNVLAEHLVRKAKAIASLKETYIQ----ELKRNE 468

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           + E L   E  L ++   +   G  VDV     + +    +  +++Q +  L  G   + 
Sbjct: 469 QFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKEFTAQLEQIEQRIYELA-GTTFNI 527

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP--QAIQVFNNRMRASRSAVLKL 291
              ++L T LF +  L +   T+T         +KL P  + I+   +  +  +     +
Sbjct: 528 NSPKQLGTILFEKLQLPIVKKTKTGYSTSADVLEKLAPYHEIIEQILHYRQLGKLQSTYV 587

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++ +  D                                + H    Q +T      +
Sbjct: 588 EGLMKVVRKD------------------------------TGKVHTIFQQALTQTGRLSS 617

Query: 352 SDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           ++P+   I         +R   + S +   +  AD + IE RVLA +A ++  + AF   
Sbjct: 618 TEPNLQNIPIRIEEGRKIRQAFVPSSDDWVIFAADYSQIELRVLAHIANDENLIAAFHHD 677

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T    F+V   +VT   R   K +   + Y        +     G+     A  
Sbjct: 678 LDIHTKTAMDIFHVKEDEVTAHMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAAEF 734

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +      E +  +    +   E   + A +  ++ T                        
Sbjct: 735 I------ERYFRSYPGVKRYMEEVVQDAKQKGYVTTLL---------------------- 766

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                           +RR +P +       N  +     RS         R+ +NT   
Sbjct: 767 ---------------HRRRYLPDIT----SGNFNV-----RSFA------ERTAMNTP-- 794

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+ + M++        +    ++L VHDE++ E P  
Sbjct: 795 ----------------IQGSAADIIKKAMIDLANRLHEERLQTRLLLQVHDELILEAPKE 838

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E    ++  +M +  S    +PLK +
Sbjct: 839 EIELLKKIVPDVMENAVS--LRVPLKVD 864


>gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2]
 gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2]
          Length = 881

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/635 (15%), Positives = 193/635 (30%), Gaps = 158/635 (24%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-- 103
           D   +      LK A     V    +++      L             +   +LA     
Sbjct: 354 DLFENEYFIAWLKNASSQKKV----YDAKRTYVALNRYAAA---PQGIVFDTLLAAYLLD 406

Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----RL 156
                + +  V +     + + +E             +     R  P   E +     R 
Sbjct: 407 TNDSNNDIAGVAKHYGFYAIQSDE-----------AIYGKGVKRGLPADEEVFFAHLARK 455

Query: 157 FGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                   V + +E+ ++      +  E  L  +   +   G  VD +  H +       
Sbjct: 456 VAAINYLSVRLAKELAEKNQTALFTDMELPLSKILAEMEITGIRVDASRLHQMKGEFAER 515

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271
             +++Q++     G   +    ++L   LF + GL +   T+T       VL   K+  P
Sbjct: 516 LHEIEQKIYQEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAP 574

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +   R  A   +   +  L++ +  DG++                           
Sbjct: 575 IVEDILIYRQIAKIQSTY-VEGLLKVIQGDGKV--------------------------- 606

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIE 385
               H    Q +T      + DP+   I         +R   +   +   +  +D + IE
Sbjct: 607 ----HTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPRAKDWVIYSSDYSQIE 662

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGG 444
            RVLA ++ ++    AF  G+D++ +T  R F ++ P +VT + R   K +   + Y   
Sbjct: 663 LRVLAHISNDEHLKAAFVEGQDIHSSTAMRVFGISTPEEVTPNMRRQAKAVNFGIVYGIS 722

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                +     G+        + T      + +     +   E     A +  ++ T   
Sbjct: 723 DYGLSQ---NLGITRKAAQQYIDT------YFEKYPGVKTYMEEVVREAKDKGYVET--- 770

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                                             +  +RR +P +              +
Sbjct: 771 ----------------------------------LYHRRRYLPDI--------------N 782

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
            R+   R     R+ +NT                   +Q  + DIL   M++        
Sbjct: 783 SRNFNLRTF-AERTAINTP------------------IQGSAADILKIAMIDLDRRLKEE 823

Query: 619 KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
           K    ++L VHDE+V E P+ + E   +++  +M 
Sbjct: 824 KLQATMLLQVHDELVFEVPEDELERLDALVKEVME 858


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/688 (14%), Positives = 196/688 (28%), Gaps = 167/688 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEALE 62
           +  D ET    D+         +   ++ F+F F+D         H  +  P+ +     
Sbjct: 319 IAFDTET---TDIDT-------QSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDFA 368

Query: 63  NTDVT------IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
              V       +V  N  ++  V+K    L+ P  ++  T+VLA       A+     A 
Sbjct: 369 AWAVGQIYKGCVVGQNLKYDFKVVKRNLGLE-PPVKFKDTMVLAWLADPSQAVGMDALAK 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +L +    + ++++              R +           +Y   D  +T + +K   
Sbjct: 428 RLYNYDTIKFEDVVR-------------RGETFASVPLENAAKYAAEDAWITLKFYKSFL 474

Query: 177 PLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            L            E         +   G  ++      L    D +   L  E+  LT 
Sbjct: 475 NLLDPALIELANAHEFPFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEIYELT- 533

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284
           G   +   +++L   LF    L ++  T+T       VL+          ++   R    
Sbjct: 534 GENFNINSVKQLGAVLFEHLKLPVKKKTKTGYSTDEAVLAELIDAHLVIAKLLEYRELYK 593

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
             +                               +   +    N    SR +    Q  T
Sbjct: 594 LQST------------------------------YCEPLLNLANKDENSRIYTNFVQTGT 623

Query: 345 HLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + +P+   I +       VR    A EG   V  D + IE R+LA  + ++  L
Sbjct: 624 STGRLASKNPNLQNIPARGSLAKDVRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAFE  ED++  T    F  A        RA+ K +   L Y  G+    K+A    ++ 
Sbjct: 684 KAFENDEDIHARTAISIFGSA----DGQNRAVAKSINFGLIYGMGSS---KLAGQVNISR 736

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 ++                                            +    +  
Sbjct: 737 AEAKEYIERYF-----------------------------------------KAFPTIKG 755

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               +  A +                         +  +  +L   R   + +    ++ 
Sbjct: 756 FLEGIKTAAKN------------------------EGFVRTLLGRKRFFDFTNATPMQTA 791

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIVCET 636
           +            Y  +    I Q  + DI+   M+           ++L +HDE++ E 
Sbjct: 792 M------------YEREAVNTIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDELIFEV 839

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLK 664
            D            +     +   +PLK
Sbjct: 840 ADEHAAEFGEAAQKIMQEI-YKLNVPLK 866


>gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
 gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae
           TIGR4]
 gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I
 gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
          Length = 877

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 94/630 (14%), Positives = 185/630 (29%), Gaps = 149/630 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++      LK    +++        L+LA     P+     V    K+ 
Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419

Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
             +     + +  +  K         R+ P+                 + R     L   
Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470

Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              E L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +
Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYELA-GQEFN 529

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T       VL            + + R    +    
Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ ++ D                                + H   +Q +T     
Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +++P+   I         +R   + SE G  +  AD + IE RVLA +A +   ++AF 
Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+V+  +VT   R   K +   + Y         +A    +     A
Sbjct: 679 RDLDIHAKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +      E +  +    +   E   + A +  ++ T   R     R+    ++     
Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLLHR-----RRYLPDITS---- 780

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                                                     R+   R     R+ +NT 
Sbjct: 781 ------------------------------------------RNFNVRSF-AERTAMNTP 797

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++        +    ++L VHDE++ E P
Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
             +      L   +M         +PLK +
Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867


>gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 893

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 97/542 (17%), Positives = 165/542 (30%), Gaps = 137/542 (25%)

Query: 148 PNHREAWRLFGEYCKGDV----TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
           P H E    +       +    +         E   + E  L  +   +   G  V+ A 
Sbjct: 455 PLHNEQIAFYEVILAAQLYGPMSAALADANLTELYGTVELPLVPILAAMERTGVAVNRAA 514

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----T 258
                   +    +++Q++ +L  G   +    ++L   LF   GL    + +T     T
Sbjct: 515 LGRALAAANARIAEIEQDIYALA-GTEFNISSPKQLGEVLFDRLGLTSPKMKKTKTGYST 573

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P   +V   RM                                S+   
Sbjct: 574 NAEVLEEMRAAHPVVDRVLTYRM-------------------------------WSKIRS 602

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373
                      P   R H   +Q +T      +SDP+   I         VR+     EG
Sbjct: 603 TYLEGIGALIRPDTGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFEPGEG 662

Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+ AD + IE R+LA M+G++  + AF  G+D++  T +  F V  A+VT  QR   
Sbjct: 663 YDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSA 722

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y        +     G+     A  +      E + +  +  R   +     
Sbjct: 723 KAVNFGIVYGLSDYGLSQ---DLGIPRKEAAGYI------ERYFERYHGVRAFLDRVVAD 773

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A  + F+ T                                    +  R+R         
Sbjct: 774 AHTNGFVTT------------------------------------LYGRRRA-------- 789

Query: 553 KDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                    LP+  S  +    N  R  +NT                   +Q  + D++ 
Sbjct: 790 ---------LPAINSRNFMQRSNAERMAMNTP------------------IQGTAADLIK 822

Query: 612 EGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLK 664
             M+ A  A         I+L VHDE+V E  + +    +  L   M+     A  +PL 
Sbjct: 823 IAMIRADAALRAAGVKSRILLQVHDELVLEVVNDEIAQVTELLTAAMSGAAQLA--VPLA 880

Query: 665 AE 666
            +
Sbjct: 881 VD 882


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 105/693 (15%), Positives = 214/693 (30%), Gaps = 166/693 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57
             + ID ET S        +  Y     +I  +  F +                    ++
Sbjct: 341 KYISIDTETSS--------LDTY--TAKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390

Query: 58  KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           ++   L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A
Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            K    K  + +++I              +N      +  +   Y   D  +T  +F   
Sbjct: 449 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLFNIF 495

Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       +   E     +   + + G  +D        + +  E   ++ E+   
Sbjct: 496 TEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIENEIIK- 554

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           + G+  +    +++   LF +  L L +  +   T  +VL S ++       +  +R  A
Sbjct: 555 SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKHRRIA 614

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
              +    + L+E +N                               + +R H    Q  
Sbjct: 615 KLKSTYT-DNLIELINY------------------------------KTNRLHTSFIQTR 643

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   I         +R       G   + AD + IE  +LA ++ ++  
Sbjct: 644 TATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +KAFE  +D++V T ++ F     ++T + R I K +   + Y+       ++A   G+ 
Sbjct: 704 IKAFENNKDIHVETASKLFKTEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT 760

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                            E+A+ F     +++                          ++ 
Sbjct: 761 ----------------KEEAKGFINSYFDSY-------------------------PKIK 779

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E                          +  +   K+         S   L  R      +
Sbjct: 780 EF------------------------IINQINFVKNTGY------SETILKRRRYIKEIN 809

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
             N   R              + +Q  + DI+   M+         K    I+L VHDE+
Sbjct: 810 SNNYLERSAAERIA-----INSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEM 864

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           + E+P  +E     +  +M    ++   LPL+A
Sbjct: 865 LIESPIKEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 104/693 (15%), Positives = 215/693 (31%), Gaps = 166/693 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57
             + ID ET S        +  Y     +I  +  F +                    ++
Sbjct: 341 KYISIDTETSS--------LDTY--TAKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390

Query: 58  KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           ++   L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A
Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            K    K  + +++I              +N      +  +   Y   D  +T  +F   
Sbjct: 449 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLFNIF 495

Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       +   E     +   + + G  +D        + +  E   ++ E+   
Sbjct: 496 TEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIENEIIK- 554

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           + G+  +    +++   LF +  L L +  +   T  +VL S ++       +  +R  A
Sbjct: 555 SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKHRRIA 614

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
              +    + L+E +N                               + +R H    Q  
Sbjct: 615 KLKSTYT-DNLIELINY------------------------------KTNRLHTSFIQTR 643

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   I         +R       G   + AD + IE  +LA ++ ++  
Sbjct: 644 TATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +KAFE  +D+++ T ++ F +   ++T + R I K +   + Y+       ++A   G+ 
Sbjct: 704 IKAFENNKDIHIETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT 760

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                            E+A+ F     +++                          ++ 
Sbjct: 761 ----------------KEEAKGFINSYFDSY-------------------------PKIK 779

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E                          +  +   K+         S   L  R      +
Sbjct: 780 EF------------------------IINQINFVKNTGY------SETILKRRRYIKEIN 809

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
             N   R              + +Q  + DI+   M+         K    I+L VHDE+
Sbjct: 810 SNNYLERSAAERIA-----INSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEM 864

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           + E+P  +E     +  +M    ++   LPL+A
Sbjct: 865 LIESPIKEENEVKKILKIMMET-AYTLNLPLRA 896


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
          Length = 881

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 118/660 (17%), Positives = 219/660 (33%), Gaps = 150/660 (22%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFER--TVLKACFNL 86
           +I FA+G      +L+      ++   + KE LE T + +      F+R   +L     L
Sbjct: 338 IIGFAWGTKG---QLYASTDTALLQTPIFKEFLEKTPLKVY----DFKRAKVLLSH---L 387

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           DI + +      LA+          +     L SQ      E++  + KG          
Sbjct: 388 DITLQKPAFDSRLAKYLLSTVEDNEISTIASLYSQIALPLDEVV--YGKGAKKAIPEKTA 445

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
              H           +  +    +   +L+ L   EQ L  +   +   G  V+      
Sbjct: 446 LLEHLARKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIAGIKVERQTLED 505

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR--- 261
           +    +V   +L QE+  L  G   +    ++L   LF + GL LE    T+T       
Sbjct: 506 MQVENEVVLERLTQEIYELA-GEEFNINSPKQLGVILFEKLGLPLEYTKKTKTGYSTAVD 564

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL     + P   ++   R  A   +   +  L + +  DG++                 
Sbjct: 565 VLERLAPIAPIVSKILEYRQIAKIQSTY-VIGLQDWILEDGKI----------------- 606

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKK 375
                         H    Q +T      + DP+   I         +R   +  E    
Sbjct: 607 --------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEEENSV 652

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  VT + R   K 
Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRRNAKA 712

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y         +++  G++       ++T                          
Sbjct: 713 VNFGVVYGISDF---GLSNNLGISRKEAKAYIETYF------------------------ 745

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKK 553
                                R   + + + +   +  + G    + ++RR++P +    
Sbjct: 746 --------------------ERYPGIKDYMERVVREARDKGYVETLFKRRREIPDI---- 781

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                     + R+   R     R+ +N+                   +Q  + DIL   
Sbjct: 782 ----------NSRNFNVRGF-AERTAINSP------------------IQGSAADILKIA 812

Query: 614 MMNATKAGYD------IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           M++  +A         ++L VHDEIV + P  +      L    M S    A  +PL+A+
Sbjct: 813 MIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESAIELA--VPLEAD 870


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 95/627 (15%), Positives = 181/627 (28%), Gaps = 143/627 (22%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++      LK    +++        L+LA     P+     V    K+ 
Sbjct: 361 LADETKKKSMFDAKRAAVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 417

Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177
             +     + +  +  K         R+ P+                 + R     L   
Sbjct: 418 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPSLDELRSN 468

Query: 178 -----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +
Sbjct: 469 EQDGLLIKLEQPLATILAEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYELA-GQEFN 527

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L   LF +  L +   T+T         +KL P    V N              
Sbjct: 528 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEN-------------- 573

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                          L +    +              P   + H   +Q +T      ++
Sbjct: 574 --------------ILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALTQTGRLSSA 619

Query: 353 DPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           +P+   I         +R   + SE    +  AD + IE RVLA +A +   ++AF    
Sbjct: 620 EPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDL 679

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T    F+V+  +VT   R   K +   + Y         +A    +     A  +
Sbjct: 680 DIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGVVYGISDY---GLAQNLNITRKEAAEFI 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                 E +  +    +   E   + A +  ++ T   R     R+    ++        
Sbjct: 737 ------ERYFASFPGVKRYMETIVQEAKQKGYVTTLLHR-----RRYLPDITS------- 778

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                                                  R+   R     R+ +NT    
Sbjct: 779 ---------------------------------------RNFNVRSF-AERTAMNTP--- 795

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640
                          +Q  + DI+ + M++        +    ++L VHDE++ E P  +
Sbjct: 796 ---------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEE 840

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAE 666
                 L   +M      A  +PLK +
Sbjct: 841 MERLCQLVPEVMEQAV--ALRVPLKVD 865


>gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
          Length = 875

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/668 (15%), Positives = 201/668 (30%), Gaps = 161/668 (24%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
              L      D     +          +L+  LE++       +S   +  LK      I
Sbjct: 328 TCALLGMALSDGTKTQYIPFEIAAKSDILRRWLEDSSKIKYMSDSKASKAALKRA---GI 384

Query: 89  PIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +      LVLA     P      +  +   L     + +E                +Y 
Sbjct: 385 QLAGVDFDLVLASYINNPGLSGDDVATLARELGYYDVQADE---------------TVYG 429

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIND 194
           +             ++          +  +LE L  +          E  L  +   +  
Sbjct: 430 KGAKRAVPEIDKLAQHVSRKAYAVWSLQPKLEALLKENEQFDLYKELELPLAAILGEMES 489

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  V+ A    + Q ++ +   L+QE+ +   G   +    ++L   LF + GL +   
Sbjct: 490 EGITVNRATLEKMGQELNDKLVVLEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKK 548

Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+T   T   VL   K        +   R    +     +  L++ ++            
Sbjct: 549 TKTGYSTAADVLEKLKSEHAIIEYILLYRQL-GKLQSTYIEGLLKEIHE----------- 596

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366
                              + S+ H    Q +T      ++DP+   I         +R 
Sbjct: 597 -------------------KDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQ 637

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             + S E   L  AD + IE RVLA M+ ++  ++AF  G D++  T    F+V+  +V 
Sbjct: 638 AFVPSKEDWILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVD 697

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K +   + Y        +      +     A  +      E++  +    +  
Sbjct: 698 SNMRRAAKAVNFGIVYGISDYGLSQ---NLDITRKEAATFI------EKYFASFPGVKQY 748

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            ++  ++A  + ++ T                                        +RR 
Sbjct: 749 MDDIVQNAKFNGYVTTILN-------------------------------------RRRY 771

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +P +              + RS         R+ +NT                   +Q  
Sbjct: 772 LPDITSSNF---------NLRSFA------ERTAMNTP------------------IQGS 798

Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+ + M++             ++L VHDE++ E P  +      +   +M +     
Sbjct: 799 AADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIAMLEKIVPEVMENAIE-- 856

Query: 659 KGLPLKAE 666
             +PLK +
Sbjct: 857 LSVPLKVD 864


>gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4]
 gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4]
          Length = 915

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 122/665 (18%), Positives = 200/665 (30%), Gaps = 158/665 (23%)

Query: 25  AEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
           A D      A      +    L D + D   P+ L EA         A         + A
Sbjct: 372 ASDGECAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWA---------IHA 415

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                  +        LA     P        +  L    +   K  +     G+    L
Sbjct: 416 LRGRGWTLGGLTSDTALAAYLVRPGQ-----RSFNLDDLSLRYLKRELRAETSGQEQLSL 470

Query: 143 YDRNKPNHREAWRLFGEYC------KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            D  +    EA                 +    E  +    LS  E  L      I   G
Sbjct: 471 LDDTEQLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATG 530

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD A  H L      +          +    + +    ++L+  LF E  +     T+
Sbjct: 531 IAVDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTK 589

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313
           T       + + L  +    F   + A R A    + ++ L++A+  DGR+  T      
Sbjct: 590 TGYTTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTT------ 643

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                     +Q +       ++DP+   I         +R   
Sbjct: 644 -------------------------FNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGF 678

Query: 369 IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  +G   L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT +
Sbjct: 679 VVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPE 738

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K M   L Y   A     +AS   ++                             
Sbjct: 739 LRRRVKAMSYGLAYGLSAY---GLASQLKISTEEA------------------------- 770

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      +R   + + LH   EQ  ++G       RR   
Sbjct: 771 -------------------KQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLYGRRRY- 810

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                LN+  RQ  RE      L   I Q  + 
Sbjct: 811 --------------LP---------------DLNSDNRQ-RREVAERAALNAPI-QGTAA 839

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKG 660
           DI+   M+N  KA         ++L VHDE+V E   ++ E   +++   M +       
Sbjct: 840 DIIKVAMINVQKALAEAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LS 897

Query: 661 LPLKA 665
           +PL  
Sbjct: 898 VPLDV 902


>gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54]
 gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54]
          Length = 877

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375]
          Length = 877

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
 gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
          Length = 884

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 113/655 (17%), Positives = 203/655 (30%), Gaps = 141/655 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVM--PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           L  F         W   +DP +   Q + + L +  +     ++      L       I 
Sbjct: 340 LVGFAIGQG--NKWYVTNDPELLHNQHVSDLLTSKTIKKNLFDAKRTYVGLYRQ---GIE 394

Query: 90  IHRWICTLVLARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGE--THECLY 143
           +      ++L       +     +  V       + K +E  E+  +  K         +
Sbjct: 395 LANVDFDMLLVSYLLNTTNNSNDVGTVAHLHGFYNVKTDE--EVYGKGAKRHIDPQSPAF 452

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
             +  +  +A     +    D+        +L      E ++ ++   +   G  VD A 
Sbjct: 453 LAHLVHKVKAIDALHDGMFKDLDA--HNQSKL--YWDIEIKIAFVLAHMEINGIKVDAAT 508

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
              +         +++Q +     G   +    ++L   LF +  L +   T+T     +
Sbjct: 509 LEGMGSKFKERLAEIEQTIFQEA-GEEFNIGSPKQLGKILFEKLRLPILKKTKTGYSTSV 567

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
              +KL P A  V                            +  L +   S+        
Sbjct: 568 DVLEKLAPDAPIV----------------------------QNVLDYRQISKLQSTYVDG 599

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLV 377
                 P  S+ H    Q +T      + DP+   I         +R   I S  G ++ 
Sbjct: 600 LLKVIHPDDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGRLIRQAFIPSHPGWQIF 659

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436
            +D + IE RVLA +  +Q    AF+ GED++ TT  R F +    +VT + R   K + 
Sbjct: 660 SSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQAKAVN 719

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y         +AS TG+        +      E + +     +   E+  E A   
Sbjct: 720 FGIVYGISDF---GLASNTGITRKQAHQFI------ERYFEEYPGVKKYTEDIVEFARNH 770

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T                                     IA +RR +P +  K    
Sbjct: 771 RYVET-------------------------------------IAHRRRYLPDINSKSF-- 791

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                  + RS         R+ +NT                   +Q  + DI+   M+N
Sbjct: 792 -------NLRSFA------ERTAMNTP------------------IQGSAADIIKIAMIN 820

Query: 617 ATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
              A       ++L VHDE++ E PD +      L   +M S       +PLK E
Sbjct: 821 MADAIKDMKTRMLLQVHDELIFEVPDEELDTVKQLIPSVMDSAIH--LNVPLKVE 873


>gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 884

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 156/555 (28%), Gaps = 144/555 (25%)

Query: 129 LIARFCKGETHECLY-----------DRNKPNHREAWRLFGEYCKGD--VTVTREIFKRL 175
           L+A           Y                   E   +       D       +     
Sbjct: 420 LMAYLLDPTRTNYGYLYLTERFSVPSIATGSVDVECVSMVKALLAMDDAAVKALQDESLW 479

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           +  ++ E  L +    +   G  +D             E   + QE+  L  G   +   
Sbjct: 480 DLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELEAVQQEIYELA-GETFNINS 538

Query: 236 LEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF +  L +   T+T       VL   +  +P   ++   R            
Sbjct: 539 PKQLGIILFEKMNLPVIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------ 586

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                                ++              P   R H   +Q++T      +S
Sbjct: 587 -------------------SVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSS 627

Query: 353 DPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           DP+   I         +R+     EG   LV AD + IE R+LA ++G++  +KAF  G+
Sbjct: 628 DPNLQNIPVRTEKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGK 687

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A     +  +VT ++R+  K +   + Y         ++   G+      + +
Sbjct: 688 DIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDF---GLSRDLGITRQEAKNYI 744

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +                                               SR  ++   +  
Sbjct: 745 ELYF--------------------------------------------SRYPKVKEYMDN 760

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTR 585
              +  E GK      R               +  LP   S  + R     R+ +NT   
Sbjct: 761 MVIEAHETGKVRTMFGR---------------MRELPDINSRNFNRRSFAERTAMNTP-- 803

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M               ++L VHDE+V E    
Sbjct: 804 ----------------IQGTAADIIKLAMNKVESILEEKAFKSRLLLQVHDELVLEV-VN 846

Query: 640 DEFNASM--LYHLMT 652
           +E +A    L   M 
Sbjct: 847 EELDAIQTLLKETME 861


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/630 (15%), Positives = 185/630 (29%), Gaps = 149/630 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++      LK    +++        L+LA     P+     V    K+ 
Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419

Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
             +     + +  +  K         R+ P+                 + R     L   
Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470

Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              E L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +
Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELA-GQEFN 529

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T       VL            + + R    +    
Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ ++ D                                + H   +Q +T     
Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +++P+   I         +R   + SE G  +  AD + IE RVLA +A +   ++AF 
Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+V+  +VT   R   K +   + Y         +A    +     A
Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +      E +  +    +   E   + A +  ++ T                      
Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLL-------------------- 769

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                             +RR  P +                R+   R     R+ +NT 
Sbjct: 770 -----------------HRRRYFPDITS--------------RNFNVRSF-AERTAMNTP 797

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++        +    ++L VHDE++ E P
Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
             +      L   +M         +PLK +
Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867


>gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
 gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
          Length = 880

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 118/630 (18%), Positives = 221/630 (35%), Gaps = 133/630 (21%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHR 92
           A    D P  + D   D       K+  E+  +   + +   +  +L     +L++P   
Sbjct: 339 AIKTKDSPAYILDP--DQAFIDSFKDVFEDEKILKNSFDIKEDIVLLNKLGIDLNLPFDD 396

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            +    L   +     LK + +A  L  + + E  +L+ +  K  ++  L      N+  
Sbjct: 397 LMLMHYLIDPSRSSYDLKTLSQAY-LDYEVISEV-DLLGKGKKSLSYGELDYDKLSNYLA 454

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           +     E  K  +      +K  +     E +L  +   +   G+  D  +   L + ++
Sbjct: 455 SELNAIEDAKAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGFVTDRKVLLDLKEDIN 514

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL 269
            +  KL  E+  L  G   +    ++L   LF +  L +   T+T   T   VL   +  
Sbjct: 515 KDLEKLTSEIYELA-GSEFNINSTKQLGEVLFKDLDLPVIKKTKTGFSTDASVLEKLRDK 573

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                ++   R    +     +  L +A++ DGR+R T +                 QN+
Sbjct: 574 HQIIPKIEKYR-ELFKLQSTYIEGLEKAIDDDGRIRSTFR-----------------QNI 615

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384
                                + DP+   +         +R    A +GK L+ AD + I
Sbjct: 616 --------------AATGRLSSQDPNLQNLPIKTDEGRLIRKAFKAGQGKILIDADYSQI 661

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++G++  ++AF  GED++  T ++ F+    +VTK QR+  K +   + Y   
Sbjct: 662 ELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKRQRSDAKAVNFGIIYG-- 719

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                   S  GL+ N               ++A+ +      ++P              
Sbjct: 720 -------ISDYGLSQN----------LNIPRKEAKAYIDNYMASYP-------------- 748

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLP 563
                          +   +    E+  E+G    +  +RR VP +              
Sbjct: 749 --------------SIKAYMDSIVEKAKEDGFVETLFNRRRYVPEI-------------- 780

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATK 619
           + ++   R  G  R  LNT                   +Q  + DI+   M+    N  K
Sbjct: 781 NSKNFNVRSFGQ-RVALNTP------------------IQGTAADIIKIAMIETDKNLKK 821

Query: 620 AG--YDIVLTVHDEIVCETPDTDEFNASML 647
           AG    IVL +HDEI+ E    D+ +A  +
Sbjct: 822 AGLDAKIVLQIHDEIILEASLEDKDSAMEI 851


>gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17]
 gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46]
 gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
 gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
          Length = 904

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/517 (17%), Positives = 162/517 (31%), Gaps = 131/517 (25%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELES 224
                       L   E  +  +   +   G  VD+ +   L +Q  D  R   D     
Sbjct: 489 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAADAAYGV 548

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +  G   +    ++L+  LF E G+     T+T       + + L  +    F   + A 
Sbjct: 549 I--GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAH 606

Query: 285 RSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           R      + ++ L++A+ +DGR+                               H   +Q
Sbjct: 607 RDVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQ 635

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGE 395
            I       +++P+   I      S  +R   +  +G  +L+ AD + IE R++A ++G+
Sbjct: 636 TIAATGRLSSTEPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGD 695

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF TGEDL+    +R+F V   +VT + R   K M   L Y   A    +    +
Sbjct: 696 EGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIS 755

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
               N                                                      +
Sbjct: 756 TEEANE-----------------------------------------------QMDAYFA 768

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R   + + L    E+  ++G       RR                 LP   S        
Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS-------- 805

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
                   + +  RE      L   I Q  + DI+   M+   KA         ++L VH
Sbjct: 806 --------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVH 856

Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
           DE++ E    +      L    M    ++   +PL+ 
Sbjct: 857 DELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 891


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/630 (15%), Positives = 185/630 (29%), Gaps = 149/630 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++      LK    +++        L+LA     P+     V    K+ 
Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419

Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
             +     + +  +  K         R+ P+                 + R     L   
Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470

Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              E L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +
Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELA-GQEFN 529

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T       VL            + + R    +    
Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ ++ D                                + H   +Q +T     
Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +++P+   I         +R   + SE G  +  AD + IE RVLA +A +   ++AF 
Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+V+  +VT   R   K +   + Y         +A    +     A
Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +      E +  +    +   E   + A +  ++ T                      
Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLL-------------------- 769

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                             +RR  P +                R+   R     R+ +NT 
Sbjct: 770 -----------------HRRRYFPDITS--------------RNFNVRSF-AERTAMNTP 797

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++        +    ++L VHDE++ E P
Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
             +      L   +M         +PLK +
Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867


>gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
 gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
          Length = 876

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 190/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +         +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEVDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    F+ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
 gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
          Length = 895

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/616 (16%), Positives = 190/616 (30%), Gaps = 138/616 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKA 111
            L+  +EN  +     N   +  + K    L + +       +LA          + L  
Sbjct: 374 ELRSVIENAAIIKNVFNVKAQFVLFKR---LGMTLRGVEFDFLLAAYLLDTTDNDNELST 430

Query: 112 VGEALKLS--SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           + +         +   GK         ET   L   +  +  +      +          
Sbjct: 431 LAQRFDFYVTPDEDIYGKG-AKYAVPEETSRVLV--HLAHKADVLMQLEQPA----FAAL 483

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +  ++    +  E  L ++   +  RG  +D      +   ++     + + +  +  G 
Sbjct: 484 QDHEQTHLYTEIELPLAHVLADMEYRGIKIDQTRLREIGTDLEERIDTIKEAIF-IEAGE 542

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           V +    ++L   LF + GL +   T+T     +   +KL PQA  V             
Sbjct: 543 VFNINSPKQLGILLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQAPIVD------------ 590

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                             LQ+   ++               + S+ H    Q +T     
Sbjct: 591 ----------------HILQYRQLAKLKSTYVDGLLSVVHEKDSKIHTRFLQTLTQTGRL 634

Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R+  + S    ++  AD + IE RVLA M G++   +AF 
Sbjct: 635 SSIDPNLQNIPMRTEAGRKIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFL 694

Query: 404 TGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            GED++  T    F +     V    R   K +   + Y         +A+  G++    
Sbjct: 695 NGEDIHAETARAVFGLDDNVPVDPLMRRTAKAVNFGIVYGISDF---GLANNLGISRAEA 751

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              ++T      +++      WM +     A E  FI T                     
Sbjct: 752 KRFIET-----YFQEFPKIHEWMTQ-IKAKAHEQGFIET--------------------- 784

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                           IA++RR +P +  K           + RS         R+ +N+
Sbjct: 785 ----------------IAKRRRYLPEIGSKNF---------NLRSFA------ERTAMNS 813

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET 636
                              +Q  + DI+   M+    A         ++L VHDE++ E 
Sbjct: 814 P------------------IQGSAADIIKIAMIKVADALQENGMQARMLLQVHDELIFEA 855

Query: 637 PDTDEFNASMLY-HLM 651
           P  +    S L   +M
Sbjct: 856 PSDEIAELSELVTRVM 871


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 108/692 (15%), Positives = 205/692 (29%), Gaps = 174/692 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------- 54
               ID ET + ++              ++  +F    H        H   M        
Sbjct: 358 KHFVIDTET-TDVNWQ---------HAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLT 407

Query: 55  -----QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARS--NGLP 106
                  LK  L+N  +  +  +  ++  +L     NL      W    +LA    N + 
Sbjct: 408 REDVLAQLKPILQNPQIGKIGQHLKYDAHILANYHINLINEPSNWAMDTMLASYVINAVA 467

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           +       A      +    +++  +  K  T + +             +  +Y   D  
Sbjct: 468 TRHGMDDLARHYLHTQTITFEDVAGKGAKQITFDKV----------PLTVASDYACEDAD 517

Query: 167 VTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVER 215
           +T ++F+        E     L              +   G  ++ A    L+   D E+
Sbjct: 518 ITYQLFELFSEKLKAEPNNAKLLHELEIPVAQILCQMEHDGILLNKAFLGELSARFD-EK 576

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
            +  + +     G   +    ++L   LF   G+     T+T    T + VL++     P
Sbjct: 577 IQALETVAFAQAGETFNLASPKQLGEVLFDRLGITGGKKTKTGQYSTSEAVLATID--HP 634

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      + L    +S+ R+                           
Sbjct: 635 LIETVLEHR-SLSKLKSTYTDALANVADSNDRV--------------------------- 666

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
               H    Q +T      +++P+   I         +R   IA +G+K++ AD + IE 
Sbjct: 667 ----HTSYHQALTTTGRLSSTEPNLQNIPIRTDTGRLIRGAFIAPKGRKVLSADYSQIEL 722

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A  A +   ++AF+ G D++  T A     A   VT ++R   K +   L Y     
Sbjct: 723 RLMAHFANDPVLIRAFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVNFGLLYGMSEF 782

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +A   G                   + A+++ +     +P                
Sbjct: 783 ---GLAKQLGFTR----------------QQAQDYIKLYFARYPT--------------- 808

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                                  +         A+ +  +  +               GR
Sbjct: 809 ----------------------VRAYMQATRTAAQNQGYITTIL--------------GR 832

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----Y 622
            L   D+ +     N   RQ          L     Q  + DI+   M+   +       
Sbjct: 833 KLFTPDMQHP----NRGVRQAAERAAINAPL-----QGSAADIIKLAMIAVNEVLPTEHA 883

Query: 623 DIVLTVHDEIVCETP-DTDEFNASMLYHLMTS 653
            ++L VHDE+V E   D  E  A ++ + M  
Sbjct: 884 KMLLQVHDELVFEADEDKAEAIAELIKNAMQE 915


>gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
 gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AKRTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/630 (15%), Positives = 185/630 (29%), Gaps = 149/630 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++      LK    +++        L+LA     P+     V    K+ 
Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419

Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
             +     + +  +  K         R+ P+                 + R     L   
Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470

Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              E L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +
Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELA-GQEFN 529

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T       VL            + + R    +    
Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ ++ D                                + H   +Q +T     
Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +++P+   I         +R   + SE G  +  AD + IE RVLA +A +   ++AF 
Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+V+  +VT   R   K +   + Y         +A    +     A
Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +      E +  +    +   E   + A +  ++ T                      
Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLL-------------------- 769

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                             +RR  P +                R+   R     R+ +NT 
Sbjct: 770 -----------------HRRRYFPDITS--------------RNFNVRSF-AERTAMNTP 797

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++        +    ++L VHDE++ E P
Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
             +      L   +M         +PLK +
Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A  +   Y   D  +T  +F 
Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDVASHYACEDADITFRLFN 535

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A    
Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906


>gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
 gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
          Length = 961

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/490 (17%), Positives = 159/490 (32%), Gaps = 127/490 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L      + +RG  ++    H  ++ +DV     ++E+  +  G   +    ++L
Sbjct: 563 EIEMPLVSTLYEMEERGIKLNKEELHEYSEELDVLIKNYEEEIYKMA-GEEFNINSPKQL 621

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L     T+T       VL   +   P   +V N R  A   +    + L  
Sbjct: 622 GVILFEKLRLPYGKKTKTGYSTSADVLERIRLEDPIVERVLNYRQVAKLKSTYT-DGLEG 680

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  DGR+                               H +L+Q++T      +++P+ 
Sbjct: 681 YVKEDGRI-------------------------------HCKLNQLVTATGRLSSTEPNL 709

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I     +   +R   +  EG   V AD + IE R++A ++G++  +KA++  ED++  
Sbjct: 710 QNIPIRMELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHRI 769

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V   +VT  QR   K +   + Y   +     +    G++             
Sbjct: 770 TASHVFGVPLDEVTDLQRRNAKAVNFGIIYGISSF---GLGENLGISRK----------- 815

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                DAE +     + +P                            ++   L    E  
Sbjct: 816 -----DAEKYINDYFKAYP----------------------------QVKKYLDSLVETG 842

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
           IE G                        +   +  + + R  G  R  +N+         
Sbjct: 843 IEKG-------------FVKTYFGRIRPIPELNSNNFMKRQFGE-RIAMNSP-------- 880

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNA 644
                     VQ  + DI+   M +             ++L +HDE++ E  + D E  A
Sbjct: 881 ----------VQGTAADIIKIAMNSVNARLKSEFPDSRLLLQIHDELLIEAKEEDKEAVA 930

Query: 645 SMLYHLMTSN 654
            +L   M   
Sbjct: 931 KLLKEEMMKA 940


>gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597]
 gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597]
          Length = 877

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 431 GVKKALPEREKFLEHLARKLSVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    ++   KL QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 491 GITVKKETLLEMQTENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 798 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 857

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 858 Q--LSVPLIAD 866


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/628 (15%), Positives = 193/628 (30%), Gaps = 145/628 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++   R V+   +   I +      L+LA     P+     +    K+ 
Sbjct: 361 LADETKKKSMFDAK--RAVVALKW-KGIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMK 417

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNH-----REAWRLFGEYCKGDVTVTREIFKR 174
             +     E +  + KG       ++    H        W L   +   D     E  + 
Sbjct: 418 QYEAVRSDEAV--YGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF--MDDLRNNEQDQL 473

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           L  L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +  
Sbjct: 474 LTKL---EQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIEQRIYELA-GQEFNIN 529

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +  L +   T+T       VL            + + R    +     +
Sbjct: 530 SPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQSTYI 588

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++ +  D                                + H   +Q +T      +
Sbjct: 589 EGLLKVVRPD------------------------------TGKVHTMFNQALTQTGRLSS 618

Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           ++P+   I         +R   + SE    +  AD + IE RVLA +A +   ++AF+  
Sbjct: 619 AEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRD 678

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T    F+V+  +VT + R   K +   + Y         +A    +     A  
Sbjct: 679 LDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEF 735

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +      E +  +    +   EN  + A +  ++ T   R     R+    ++       
Sbjct: 736 I------ERYFASFPGVKQYMENIVQEAKQKGYVTTLLHR-----RRYLPDITS------ 778

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                                                   R+   R     R+ +NT   
Sbjct: 779 ----------------------------------------RNFNVRSF-AERTAMNTP-- 795

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+ + M++        +    ++L VHDE++ E P  
Sbjct: 796 ----------------IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKE 839

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E    ++  +M    +    +PLK +
Sbjct: 840 EIERLCELVPEVMEQAVT--LRVPLKVD 865


>gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 884

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 156/555 (28%), Gaps = 144/555 (25%)

Query: 129 LIARFCKGETHECLY-----------DRNKPNHREAWRLFGEYCKGD--VTVTREIFKRL 175
           L+A           Y                   E   +       D       +     
Sbjct: 420 LMAYLLDPTRTNYGYLYLTERFSVPSIATGSVDVECVSMVKALLAMDDAAVKALQDESLW 479

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           +  ++ E  L +    +   G  +D             E   + QE+  L  G   +   
Sbjct: 480 DLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELEAVQQEIYELA-GETFNINS 538

Query: 236 LEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF +  L +   T+T       VL   +  +P   ++   R            
Sbjct: 539 PKQLGIILFEKMNLPVIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------ 586

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                                ++              P   R H   +Q++T      +S
Sbjct: 587 -------------------SVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSS 627

Query: 353 DPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           DP+   I         +R+     EG   LV AD + IE R+LA ++G++  +KAF  G+
Sbjct: 628 DPNLQNIPVRTEKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGK 687

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A     +  +VT ++R+  K +   + Y         ++   G+      + +
Sbjct: 688 DIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDF---GLSRDLGITRQEAKNYI 744

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +                                               SR  ++   +  
Sbjct: 745 ELYF--------------------------------------------SRYPKVKEYMDN 760

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTR 585
              +  E GK      R               +  LP   S  + R     R+ +NT   
Sbjct: 761 MVTEAHETGKVRTMFGR---------------MRELPDINSRNFNRRSFAERTAMNTP-- 803

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M               ++L VHDE+V E    
Sbjct: 804 ----------------IQGTAADIIKLAMNKVESILEEKTFKSRLLLQVHDELVLEV-VN 846

Query: 640 DEFNASM--LYHLMT 652
           +E +A    L   M 
Sbjct: 847 EELDAIQTLLKETME 861


>gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c]
 gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 252

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 106/258 (41%), Positives = 135/258 (52%), Gaps = 13/258 (5%)

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +TK+QR IGKV ELALGY GG  AF   A+   ++L   A   +    P   ++A     
Sbjct: 1   MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAA--QAVFPPLLLQEATELLE 58

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
           W + NH            AC+  K+AWR  H  ++  W  L  A    I + +       
Sbjct: 59  WTKANHRPTFDLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPET-----T 113

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKL 597
                + ++  +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL
Sbjct: 114 HTCCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKL 173

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P W
Sbjct: 174 VENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPW 233

Query: 658 AKGLPLKAEGYESKRYRK 675
           A+GLPL AEG+++ RYRK
Sbjct: 234 AEGLPLAAEGFDTYRYRK 251


>gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 863

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/600 (16%), Positives = 172/600 (28%), Gaps = 137/600 (22%)

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N+D     H +              I +        +A     P          +LS   
Sbjct: 360 NSDAPKYFHEAK---AAFHMLAGRGIELRGIAHDTAIAAYLLRPGQ-----RTYELSDVY 411

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               K+ +     G+  + L   +  +  +      E     +T   +     E  +  E
Sbjct: 412 QRHLKKTL-----GQASDQLSLLDDTSLVDQAAAIMELAAE-LTKQLQAIDSFELYTDLE 465

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +   G  VDV +  T       +  + ++    L      +    ++L+  
Sbjct: 466 LPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQERAARELAGDDSLNLNSPKQLQAV 525

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMN 299
           LF    +     T+T         ++L       F + + A R        L  L++ + 
Sbjct: 526 LFETFEMPKTKKTKTGYSTAAKEIEQLAVNHPHPFLDHLLAHREYQKMKTTLEGLIKTVQ 585

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            DGR+                               H   +Q +       +++P+   I
Sbjct: 586 PDGRI-------------------------------HTTFNQTVASTGRLSSTEPNLQNI 614

Query: 360 I-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +RS  I  EG + L+ AD + IE RV+A ++ +   ++A+  GEDL+    
Sbjct: 615 PVRTEAGRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLHNYVG 674

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           ++ F+V   +VT + R   K M   L Y   A    +     G+       +        
Sbjct: 675 SKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQ---QLGIPAREAKEI-------- 723

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                     R   +   L    E+  +
Sbjct: 724 ------------------------------------MENYFERFGGVKRYLDNVVEKARK 747

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           +G       RR                 LP                LN+  R L RE   
Sbjct: 748 DGYTATVFGRRRY---------------LPE---------------LNSDNR-LARENAE 776

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNASMLYH 649
              L   I Q  + DI+   M+    A       ++L VHDE+V E    +      +  
Sbjct: 777 RAALNAPI-QGTAADIIKVAMIRVDNALRDLKSRVLLQVHDELVVEVAPGEADEVKKILE 835


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/628 (15%), Positives = 193/628 (30%), Gaps = 145/628 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++   R V+   +   I +      L+LA     P+     +    K+ 
Sbjct: 363 LADETKKKSMFDAK--RAVVALKW-KGIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMK 419

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNH-----REAWRLFGEYCKGDVTVTREIFKR 174
             +     E +  + KG       ++    H        W L   +   D     E  + 
Sbjct: 420 QYEAVRSDEAV--YGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF--MDDLRNNEQDQL 475

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           L  L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +  
Sbjct: 476 LTKL---EQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIEQRIYELA-GQEFNIN 531

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +  L +   T+T       VL            + + R    +     +
Sbjct: 532 SPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQSTYI 590

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++ +  D                                + H   +Q +T      +
Sbjct: 591 EGLLKVVRPD------------------------------TGKVHTMFNQALTQTGRLSS 620

Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           ++P+   I         +R   + SE    +  AD + IE RVLA +A +   ++AF+  
Sbjct: 621 AEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRD 680

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T    F+V+  +VT + R   K +   + Y         +A    +     A  
Sbjct: 681 LDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEF 737

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +      E +  +    +   EN  + A +  ++ T   R     R+    ++       
Sbjct: 738 I------ERYFASFPGVKQYMENIVQEAKQKGYVTTLLHR-----RRYLPDITS------ 780

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                                                   R+   R     R+ +NT   
Sbjct: 781 ----------------------------------------RNFNVRSF-AERTAMNTP-- 797

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+ + M++        +    ++L VHDE++ E P  
Sbjct: 798 ----------------IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKE 841

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E    ++  +M    +    +PLK +
Sbjct: 842 EIERLCELVPEVMEQAVT--LRVPLKVD 867


>gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031]
 gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031]
          Length = 877

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
 gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
          Length = 878

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/632 (14%), Positives = 166/632 (26%), Gaps = 164/632 (25%)

Query: 57  LKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-----K 110
           ++    +  V    HN+  F R      +  D  +       ++A     P A       
Sbjct: 365 VRRLFADAAVAKHMHNAKDFLR------WAPDFDLANICFDSMVAAYLVNPLAANQQLED 418

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            V + L L                   T      R  P  R                   
Sbjct: 419 VVHQYLNLVLVPDGP--------AAPATAADCIRRLYPVLR---------------AELR 455

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            ++        E  L  +   +   G  VD      L++       +L   + +L  G  
Sbjct: 456 GYELDYLFDRVELPLTRVLADMELAGVAVDRDQLEALSEEFGTRAGELAARICTLA-GED 514

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +     +L   LF + GL     T+T       VL    +    A  +   R       
Sbjct: 515 FNLNSPRQLGYILFEKLGLPAGKKTKTGYSTDAGVLLDLAEKHEIAALLLEYRQLI---- 570

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                      +              P   R H  L Q +T+  
Sbjct: 571 ---------------------------KLKTTYADGLAALVDPATGRLHTTLHQTVTNTG 603

Query: 348 TSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +++P+   I         +R   I     + L+ AD + IE R+LA ++G+   + A
Sbjct: 604 RLSSAEPNLQNIPIRMEEGRRIRKVFIPRDPARVLLTADYSQIELRILAHLSGDPALITA 663

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   +D++  T A  F V    VT + R+  K +   + Y         +A    +    
Sbjct: 664 FRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNFGIIYGISDF---GLARDLKVTRAE 720

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               ++                                            +  +R+  + 
Sbjct: 721 AREYIQ--------------------------------------------RYFARLPGVK 736

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             +  A     E G    A  RR                 LP                 N
Sbjct: 737 EYIDTAIRSARERGYVTTALNRR---------------RPLP------------ELFSAN 769

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635
            T R                +Q  + DI+   M+       +      ++L VHDE++ +
Sbjct: 770 HTVRSFGERAA-----VNTPIQGTAADIIKLAMVKIHARMRERNLKTLMILQVHDELLFD 824

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666
            P  +    + ++   M +       +PL  +
Sbjct: 825 VPAEEVCTVAPLVKAEMETVLP--LNVPLTVD 854


>gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
 gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
          Length = 881

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           + +       +++      L                ++L          +    G A   
Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177
               ++  + +  +  K         +  P   E   LF  +    V     +  +L   
Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469

Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           L+ K         E  L  +   +   G  VD      +         +++Q++     G
Sbjct: 470 LAEKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A  
Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ + SDG++                               H    Q +T 
Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++   
Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676

Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            AF  G+D++ +T  R F +     VT + R   K +   + Y        +     G++
Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  + T      + +     +   E     A +  ++                   
Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 769

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                               +  +RR +P +    +  N  +     RS         R+
Sbjct: 770 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
            +NT                   +Q  + DIL   M+   K          ++L VHDE+
Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 837

Query: 633 VCETPDTDEFNASML-YHLMTSN 654
           V E P+ +  +   L   +M   
Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860


>gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68]
 gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68]
 gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
          Length = 881

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           + +       +++      L                ++L          +    G A   
Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177
               ++  + +  +  K         +  P   E   LF  +    V     +  +L   
Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469

Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           L+ K         E  L  +   +   G  VD      +         +++Q++     G
Sbjct: 470 LAEKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A  
Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ + SDG++                               H    Q +T 
Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++   
Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676

Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            AF  G+D++ +T  R F +     VT + R   K +   + Y        +     G++
Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  + T      + +     +   E     A +  ++                   
Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 769

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                               +  +RR +P +    +  N  +     RS         R+
Sbjct: 770 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
            +NT                   +Q  + DIL   M+   K          ++L VHDE+
Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 837

Query: 633 VCETPDTDEFNASML-YHLMTSN 654
           V E P+ +  +   L   +M   
Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860


>gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141]
          Length = 877

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/512 (19%), Positives = 166/512 (32%), Gaps = 135/512 (26%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           LE L   EQ L ++   +   G  V       +    ++   KL QE+  L  G   +  
Sbjct: 470 LELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNVN 528

Query: 235 CLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF + GL LE    T+T       VL     + P   ++ + R  A   +  
Sbjct: 529 SPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L + + +DG++                               H    Q +T     
Sbjct: 589 -VIGLQDWILADGKI-------------------------------HTRYVQDLTQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R   +   E   L+ +D + IE RVLA ++ ++  +KAF+
Sbjct: 617 SSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 404 TGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            G D++ +T  R F +  P  VT + R   K +   + Y         +++  G++    
Sbjct: 677 EGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEA 733

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              + T                                               R   + N
Sbjct: 734 KAYIDTYF--------------------------------------------ERFPGIKN 749

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLN 581
            + +   +  + G      KRR                 LP   S  +   G   R+ +N
Sbjct: 750 YMDEVVREARDKGYVETLFKRR---------------RELPDINSRNFNIRGFAERTAIN 794

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCE 635
           +                   +Q  + DIL   M+   KA    GY   ++L VHDEIV E
Sbjct: 795 SP------------------IQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLE 836

Query: 636 TPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
            P ++      L    M         +PL A+
Sbjct: 837 VPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
 gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
          Length = 857

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/487 (16%), Positives = 152/487 (31%), Gaps = 123/487 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             EQ L  +   +   G  +D      + + +  +  KL  E+     G   +    ++L
Sbjct: 457 EVEQPLIEVLAEMEKNGISIDEENWKKVRKNMKEKEEKLLLEIYREA-GEEFNVNSPKQL 515

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF + G+     T+T         + L                              
Sbjct: 516 SHILFDKMGMPTGKKTKTGYSTAADVLENLAIDYP------------------------- 550

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
               ++  L++   ++         P        R H   +Q++T      +SDP+   I
Sbjct: 551 ---FVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNI 607

Query: 360 I-----SDCVRSCVIASEGKKL-VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +RS  +  EG    + +D + +E RVLA M+G++  ++AFE  ED++  T 
Sbjct: 608 PVRTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTA 667

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F V   +VT +QR+  K +   + Y         ++   G++       +KT     
Sbjct: 668 SEVFGVPFEEVTSEQRSHAKAVNFGIIYGISDF---GLSKQLGISRKKADEYIKTYL--- 721

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 +++  + E    + +  E+  +
Sbjct: 722 --------------------------------------KRYPGIHEF---MKKMTEEARK 740

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYT 592
            GK      R                  LP   S  + R     R+ +NT          
Sbjct: 741 TGKVKTLFGR---------------YRDLPDINSKNFQRRSFAERTAMNTP--------- 776

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCE-TPDTDEFNAS 645
                    +Q  + DI+   M+              I+L VHDE+V E   +  E  + 
Sbjct: 777 ---------IQGSAADIMKIAMIQVYGKMKKGKYKSRILLQVHDELVIEAVKEEVEEISK 827

Query: 646 MLYHLMT 652
           +L   M 
Sbjct: 828 LLKETME 834


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/534 (16%), Positives = 174/534 (32%), Gaps = 72/534 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV 112
              +    + +      ++   R V+   ++  + ++     L +A     PS  + +  
Sbjct: 356 DAFRAFARSQEKKKWLFDAK--RAVVALAWH-GVDLNGVDFDLQMASYLLDPSLSSHEIS 412

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC------KGDVT 166
             A +  +  + E + +  +  K         R+ P                   K  + 
Sbjct: 413 DIATRKGTGGVAEDEAVYGKGAK---------RSLPEEAALAEHLCRKANAMFTLKSTLE 463

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                 ++LE L   E  L  +   +   G  VD      + + +      L++ +    
Sbjct: 464 DELAQNEQLELLKKLEMPLSVVLGRMEKEGVRVDREQLEEMGKDLSDRLNTLEKAIHKEA 523

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF + GL     T+T       VL       P    +   R   
Sbjct: 524 -GEPFNINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLAGTHPIIEHLLLYRQL- 581

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L++ ++S+                                + H   +Q +
Sbjct: 582 GKLYSTYIEGLLKVIDSE------------------------------TGKVHTRFNQAL 611

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
           T      ++DP+   I         +R   +AS EG K+V AD + IE RVLA ++G++ 
Sbjct: 612 TQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVASKEGWKIVAADYSQIELRVLAHISGDER 671

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF TG D++  T    F+V   +VT   R   K +   + Y        +   + G+
Sbjct: 672 MKEAFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIVYGISDYGLSQ---SLGI 728

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                   +    A           +   EN  + A E  ++ T   R ++   +  SR 
Sbjct: 729 TRKEAKDFIDRYLASYPQ------VKAYMENVVKEAKEKGYVQTLLAR-RRYLPELKSRN 781

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570
               +   +    T   G A    KR  V +    ++      ++L     L++
Sbjct: 782 FNQRSFAERTAMNTPIQGTAADIIKRAMVKMSEALEETGLKANMLLQVHDELIF 835


>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
 gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
          Length = 926

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 100/640 (15%), Positives = 191/640 (29%), Gaps = 156/640 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
            +   +   D   + HN  ++  +LK      + +   +   ++A     P     L  V
Sbjct: 403 DVLGPVLARDTEKLGHNLKYDLLLLKQH---GVEVGGTLFDTMVAHYLVAPEENHNLDDV 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             +  + + KM    +LI         + +                 Y   D  ++  + 
Sbjct: 460 ARS--VLNYKMVPIADLIG---DETDRDSMR-------EVEVETAAPYACEDADISYRLA 507

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             LE               E  L ++  T+   G  +D  +   +   ++   + +++E+
Sbjct: 508 DELEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEV 567

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L   LF +  L +   T T    T + VL            V +
Sbjct: 568 FELA-GEEFNINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLD 626

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R      +  KL                                      P   R H  
Sbjct: 627 WR------STYKL-------------------------KSTYLDSLGELVHPETGRLHTS 655

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   +  +G  L+ AD A IE R+LA M+
Sbjct: 656 FNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+      F+ G D++    AR + + P  VT +QR+  K +   + Y         +A 
Sbjct: 716 GDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISP---WGLAQ 772

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              + ++    ++K                                          +R+ 
Sbjct: 773 RMRMPVDEAQDIIK-----------------------------------------QYRKS 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  VS+L NEL +  +   +     +  +RR +P +                        
Sbjct: 792 YPGVSQLLNELVEKAQD--KGYAETLLGRRRYLPDIDSS--------------------- 828

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLT 627
                  N+  R                +Q    D++   M               ++L 
Sbjct: 829 -------NSNARSAAERVA-----VNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQ 876

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E P  + +   +M+   M         +P+  +
Sbjct: 877 VHDELVFEVPPDELDAAQTMIDDEMRDALPL-DDVPVTVD 915


>gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/547 (15%), Positives = 161/547 (29%), Gaps = 135/547 (24%)

Query: 142 LYDRNKPNHREAWRLFGEYCK---------GDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
              R  P+                       D  + R    RL  L+  EQ L  +   +
Sbjct: 432 GAKRTVPDEPTLAEHLVRKAAAIWALEEPLMD-ELRRNEQDRL--LTELEQPLAGILANM 488

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD      +   +  +   +++ +  L  G   +    ++L T LF +  L + 
Sbjct: 489 EFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA-GQEFNINSPKQLGTVLFDKLQLPVL 547

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
             T+T         +KL P    V                               L +  
Sbjct: 548 KKTKTGYSTSADVLEKLAPHHEIVE----------------------------HILHYRQ 579

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
             +              P   + H   +Q +T      + +P+   I         +R  
Sbjct: 580 LGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQA 639

Query: 368 VIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            + SE    +  AD + IE RVLA +A +   ++AF  G D++  T    F+V+   VT 
Sbjct: 640 FVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTA 699

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A    +     A  +      E +  +    +   
Sbjct: 700 NMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEFI------ERYFASFPGVKQYM 750

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +N  + A +  ++ T   R     R+    ++                            
Sbjct: 751 DNIVQEAKQKGYVTTLLHR-----RRYLPDITS--------------------------- 778

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                              R+   R     R+ +NT                   +Q  +
Sbjct: 779 -------------------RNFNVRSF-AERTAMNTP------------------IQGSA 800

Query: 607 RDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            DI+ + M++        +    ++L VHDE++ E P  +      L   +M    +   
Sbjct: 801 ADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAVT--L 858

Query: 660 GLPLKAE 666
            +PLK +
Sbjct: 859 RVPLKVD 865


>gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457]
 gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457]
          Length = 575

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 146 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 205

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 206 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 264

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 265 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 300

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 301 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 352

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 353 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 412

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 413 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 439

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 440 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 470

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 471 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 512

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 513 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 564


>gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
 gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
          Length = 870

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/528 (18%), Positives = 169/528 (32%), Gaps = 141/528 (26%)

Query: 165 VTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           V     + ++L        L   EQ L ++   +   G  V       +    ++   KL
Sbjct: 447 VETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 506

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQA 273
            QE+  L  G   +    ++L   LF + GL LE    T+T       VL     + P  
Sbjct: 507 TQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 565

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R  A   +   +  L + + +DG++                             
Sbjct: 566 KKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------------- 595

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387
             H    Q +T      + DP+   I         +R   +   E   L+ +D + IE R
Sbjct: 596 --HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELR 653

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAK 446
           VLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y     
Sbjct: 654 VLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDF 713

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +++  G++       + T                                      
Sbjct: 714 ---GLSNNLGISRKEAKAYIDTYF------------------------------------ 734

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                    R   + N + +   +  + G      KRR                 LP   
Sbjct: 735 --------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------RELPDIN 771

Query: 567 SLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           S  +   G   R+ +N+                   +Q  + DIL   M+   KA    G
Sbjct: 772 SRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDKALVAGG 813

Query: 622 YD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           Y   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 814 YQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 859


>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
 gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
          Length = 944

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 96/539 (17%), Positives = 169/539 (31%), Gaps = 80/539 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  V  N  ++  VL       I +     T++++ +     +   +G   
Sbjct: 415 LKPLLEDDAVLKVFQNGKYDLNVLAR---EGIAVAPIDDTMIISFALDAGRSESGIGGGH 471

Query: 117 K---LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               L+ + +          C          +  P          EY   D  VT  +  
Sbjct: 472 GMDELAERHLGHPCISFKELC------GTGRKAIPFAEVPLDKATEYAAEDADVTWRLHA 525

Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+     E          + L  +   +   G  VD A    L++    E  +L+ E+ 
Sbjct: 526 MLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLAKLSEEFATETKRLEGEIH 585

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKL-TPQAIQVFN 278
            +  G   +    ++L   LF + G            +T Q VL          A +V  
Sbjct: 586 EIA-GQEFTVGSPKQLGEILFDKLGFKGGKKGKSGQYSTDQSVLEKLSGDGAEIAAKVLE 644

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A                               +              PR  R H  
Sbjct: 645 WRQLA-------------------------------KLKSTYTDALQEAINPRSGRVHTS 673

Query: 339 LDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              +        ++DP+   I     I   +R   +A EG  L+ AD + IE R+ A MA
Sbjct: 674 YSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDAFVAEEGNVLLAADYSQIELRLAAHMA 733

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +AF  GED++  T    F     +VT+D RA  K +  A+ Y         +A 
Sbjct: 734 DVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGIS---RWGLAG 786

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+  +    ++ T    + +   + +     E   E    +   G      K  + + 
Sbjct: 787 RLGVEADEAQAMIDT--YFKRFPGIQKYILHTLEYVREKGYSETLFGR-----KTWFPRI 839

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK--NNLILMLPSGRSLVY 570
           +S+         +A       G +    KR  V +    ++    ++ ++L     LV+
Sbjct: 840 NSKNQAERQGSERAAINAPIQGTSADIIKRAMVRMNSALEEAGLGHVRMLLQVHDELVF 898



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 18/189 (9%)

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ-TIENGKAIIARKRRDVPLVYMKK 553
           ED+   TA E   +  R   +R   +   +     +  +     + A + + +   Y K+
Sbjct: 746 EDIHARTATEMFGEVTRDTRARAKTINFAILYGISRWGLAGRLGVEADEAQAMIDTYFKR 805

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNT------TTRQLTREYTYGGKLTENIVQAVSR 607
                  +L +   +  +          T      +  Q  R+ +    +   I Q  S 
Sbjct: 806 FPGIQKYILHTLEYVREKGYSETLFGRKTWFPRINSKNQAERQGSERAAINAPI-QGTSA 864

Query: 608 DILAEGMMN----ATKAGY---DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA- 658
           DI+   M+       +AG     ++L VHDE+V E P+ D   A +++  +M        
Sbjct: 865 DIIKRAMVRMNSALEEAGLGHVRMLLQVHDELVFELPEADVAAASAIIERVMAGAAQPYV 924

Query: 659 -KGLPLKAE 666
              +PL  E
Sbjct: 925 ELSVPLGVE 933


>gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27]
 gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27]
          Length = 877

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/535 (15%), Positives = 156/535 (29%), Gaps = 132/535 (24%)

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           L  RF          D    +  +A     E             +      + E  L + 
Sbjct: 430 LTERFSVPSIANGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 485

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  +D             E T++ +E+  L  G   +    ++L   LF +  
Sbjct: 486 LVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKMK 544

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +  +P   ++                             
Sbjct: 545 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILA--------------------------- 577

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
               +   ++               +  R H   +Q++T      +SDP+   I      
Sbjct: 578 ----YRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 633

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R+      G   LV AD + IE R+LA ++G++  +KAF  G+D++  T A     
Sbjct: 634 GREIRALFYPGTGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 693

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           +  +VT ++R+  K +   + Y         ++   G+      + +             
Sbjct: 694 SQDEVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 741

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                              SR  ++   + +  ++  E GK   
Sbjct: 742 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 766

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598
              R+                 LP   S  + R     R+ +NT                
Sbjct: 767 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 796

Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASML 647
              +Q  + DI+   M    +          ++L VHDE+V E  +++      L
Sbjct: 797 ---IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEEL 848


>gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679]
          Length = 881

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           + +       +++      L                ++L          +    G A   
Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177
               ++  + +  +  K         +  P   E   LF  +    V     +  +L   
Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469

Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           L+ K         E  L  +   +   G  VD      +         +++Q++     G
Sbjct: 470 LADKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A  
Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ + SDG++                               H    Q +T 
Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQALTQ 616

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++   
Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676

Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            AF  G+D++ +T  R F +     VT + R   K +   + Y        +     G++
Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  + T      + +     +   E     A +  ++                   
Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 769

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                               +  +RR +P +    +  N  +     RS         R+
Sbjct: 770 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
            +NT                   +Q  + DIL   M+   K          ++L VHDE+
Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 837

Query: 633 VCETPDTDEFNASML-YHLMTSN 654
           V E P+ +  +   L   +M   
Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860


>gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317]
          Length = 881

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           + +       +++      L                ++L          +    G A   
Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177
               ++  + +  +  K         +  P   E   LF  +    V     +  +L   
Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469

Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           L+ K         E  L  +   +   G  VD      +         +++Q++     G
Sbjct: 470 LADKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A  
Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ + SDG++                               H    Q +T 
Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++   
Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676

Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            AF  G+D++ +T  R F +     VT + R   K +   + Y        +     G++
Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  + T      + +     +   E     A +  ++                   
Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 769

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                               +  +RR +P +    +  N  +     RS         R+
Sbjct: 770 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
            +NT                   +Q  + DIL   M+   K          ++L VHDE+
Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 837

Query: 633 VCETPDTDEFNASML-YHLMTSN 654
           V E P+ +  +   L   +M   
Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860


>gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
 gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
          Length = 877

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104]
 gi|332204058|gb|EGJ18123.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47901]
          Length = 877

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 882

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 94/520 (18%), Positives = 160/520 (30%), Gaps = 126/520 (24%)

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                ++   +     E  +  E  L  +   +   G  VDV +  T       +  + +
Sbjct: 462 ELAERLSAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 521

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +    L      +    ++L+T LF    L     T+T         ++L  +    F +
Sbjct: 522 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 581

Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + A R        L  L++ +  DGR+                               H
Sbjct: 582 HLLAHREYQKMKTTLEGLIKTVQPDGRI-------------------------------H 610

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390
              +Q +       +++P+   I         +RS  I  +G  +L+ AD + IE RV+A
Sbjct: 611 TTFNQTVASTGRLSSTEPNLQNIPVRTEAGRQIRSVFIVGDGFDELMTADYSQIEMRVMA 670

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++A++ GEDL+    +R F+V   QVT + R   K M   L Y   A    +
Sbjct: 671 HLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQ 730

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                                           +G      K   
Sbjct: 731 Q-----------------------------------------------LGIPAGEAKSIM 743

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                R   +   L +   Q  ++G       RR                 LP       
Sbjct: 744 ESYFERFGGVKKYLDEVVVQARKDGYTATLFGRRRY---------------LPE------ 782

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVL 626
                    LN+  R L RE      L   I Q  + DI+   M+   +A       ++L
Sbjct: 783 ---------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALQGMKSRVLL 831

Query: 627 TVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            VHDE+V E  P   +    +L   M S       +PL+ 
Sbjct: 832 QVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEV 869


>gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
          Length = 880

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 105/635 (16%), Positives = 185/635 (29%), Gaps = 153/635 (24%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA- 108
           +  +   +K  LE+  V  +  ++      L      ++ +       +LA     PS+ 
Sbjct: 362 EAKIAAEIKFILESKKVKKLMPDAKLAFLSL---LKNEVKVAGISFEPLLAFYLLQPSSS 418

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  + E L           EL   F + ET + L  +         +L            
Sbjct: 419 LPELEEVLSH---------ELSLSFTELETEQKLAVKTSKLFELETKL---------ITK 460

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +    L      E  L  +   +   G  VD      L++ +      +  +   L  G
Sbjct: 461 LKENNLLNLYQEIELPLIKVLAQMELNGVKVDKDWLANLSEKLGKRLAIITDKAHKLA-G 519

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL +   T+T       VL   +        +   R  A  
Sbjct: 520 EEFNLNSPKQLGEILFEKLGLPVIKRTKTGYSTNASVLEKLEGKHEIIPLISEYRELA-- 577

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                        +         PP      ++ H   +Q++T 
Sbjct: 578 -----------------------------KLKSTYIDSLPPLINDETAKIHTSFNQMVTA 608

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                +++P+   I         +R   I S     L+  D + IE RV A ++G+Q   
Sbjct: 609 TGRLSSTEPNLQNIPIRTEEGREIRKAFIPSRSDMILLAVDYSQIELRVFAHLSGDQKLK 668

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF    D++  T A  F V    VT D R   KV+   + Y   A    +      + +
Sbjct: 669 EAFNNEADIHTETAAEVFEVKAEAVTPDLRRHAKVINFGIAYGMSAYGLSQ---DLDIPV 725

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 +                                             +   R S 
Sbjct: 726 EEAQTYID--------------------------------------------KYFERFSG 741

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRS 578
           +   + Q  E+  + G A     RR                 +P   S  Y       R+
Sbjct: 742 VKKYMEQTIEKVKKLGYAETMFGRRRY---------------IPEINSSNYHRRSFAERT 786

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
            +NT                   VQ  + DI+ + M++            +I+L VHDE+
Sbjct: 787 AINTP------------------VQGTAADIMKKSMLDVYSCLKKSELDLNILLQVHDEL 828

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E    D +  A ++   M +       +PL  +
Sbjct: 829 VFEVNRNDLDEAAELIKEKMENTTK--LDVPLIVD 861


>gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 778

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 105/624 (16%), Positives = 201/624 (32%), Gaps = 136/624 (21%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSA 108
           D       K+  E+ ++  V+ +   +  +       ++ P    +    L   +   S+
Sbjct: 251 DQKFVDNFKKYFEDENINKVSFDIKEDIVLFNKLGIEINFPYDDIMLMHYL--IDPSRSS 308

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG---DV 165
                 +      ++   ++L+ +    ++++ L ++    +  +     E       D 
Sbjct: 309 YDLKTFSQAFLKYEVLNEEDLLGKGRNKKSYKDLSEKELGKYLSSIINAIEDSLDILTDK 368

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                +++        E +L  +   +   G+  D      +   V VE   L++ +  L
Sbjct: 369 LKELSMYEL---YKDCEIKLSKVLADMEITGFVCDKNELEKIKDEVSVELEGLEKIIYEL 425

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L   LF +  L +   T+T      +VL   +   P   ++   R  
Sbjct: 426 A-GSEFNINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERYR-E 483

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     L +L E ++ DGR+R T                   QN              
Sbjct: 484 MYKLKSTYLESLEECIDGDGRIRSTF-----------------KQN-------------- 512

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      +++P+   +         +R    A   K L+ AD + IE RVLA +A ++ 
Sbjct: 513 VTATGRLSSTEPNLQNLPIRTEEGRKIRKAFKADNEKILIDADYSQIELRVLAHLANDKK 572

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF    D++  T +  FN    +VTK QR+  K +   + Y           S  GL
Sbjct: 573 MQEAFSHDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGIIYG---------ISDYGL 623

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           + N      +     E + +     +   ++  + A E+ F+ T                
Sbjct: 624 SQNLNIPRKRAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNT---------------- 667

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                I  +RR VP +              + ++   R  G  R
Sbjct: 668 ---------------------IFNRRRYVPEI--------------NSKNFNVRSFGE-R 691

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
             LNT                   +Q  + DI+   M      +   K    IVL +HDE
Sbjct: 692 VALNTP------------------IQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDE 733

Query: 632 IVCETPDTDEFNASML-YHLMTSN 654
           I+ E    D   A  +    M   
Sbjct: 734 IIIEASKKDLQKAKEILKSSMEEA 757


>gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA]
 gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA]
          Length = 877

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 174/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R  ++ N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPDIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585]
 gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585]
          Length = 877

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 864

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/552 (17%), Positives = 173/552 (31%), Gaps = 68/552 (12%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           DC   P+    L   L+N DVT+   N+          +   +    W  ++V       
Sbjct: 356 DCTVYPLEDADLVRLLDNADVTLEVFNAA-------PLYAKAMAAGGWGSSIVW------ 402

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L A       S  ++ E              +        +     +     C  D 
Sbjct: 403 DGKLAAYLLDASASKYQISELTASYRAAAAFTCADYPDAGRLADLFCKMKAEITACGED- 461

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                        +  E  L  +   +   G  VD          +  E  ++   +   
Sbjct: 462 ----------SLYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLRTELEQVLTRIHME 511

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRA 283
           T     +    ++L   LF   GL     T+        + + L   P    +   R   
Sbjct: 512 TGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLRDYPLVEDILQYR-AY 570

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L++ +  DGR+  T     A RTGR S      QN+P  +          
Sbjct: 571 QKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRTE--------- 620

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                           +   +R+  IA  G  LV AD + IE R+LA + G++   +AF 
Sbjct: 621 ----------------LGSQLRAYFIAKPGCVLVDADYSQIELRILAHITGDEHMQQAFL 664

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++ +T A+ + +   +VT   R+  K +   + Y  GA +    A   G+++    
Sbjct: 665 NGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINFGIMYGKGAYSL---AKDIGVSVKEAD 721

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +K   A      A        +     A    ++ T   R ++A  +  S    + + 
Sbjct: 722 AFLKNYLA------AFPKVSGYMDKTIADAKACGYVSTLFGR-RRALPELASSNFNVRSS 774

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLNT 582
             +    T   G A    K   V +    +++     L+L     L    +         
Sbjct: 775 GERMARNTPIQGTAADVIKLAMVRVWKRLRNEKMESRLILTVHDEL----IVEAPQAEAE 830

Query: 583 TTRQLTREYTYG 594
              Q+ RE   G
Sbjct: 831 KAAQILREEMEG 842


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/616 (15%), Positives = 196/616 (31%), Gaps = 101/616 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL-- 57
             D ET S   L          +  V  F+    +     +             P+++  
Sbjct: 362 SYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 411

Query: 58  KEA------LENTDVTIVAHNSYFERTV-LKACFNLDIPIHRWICTLVLARSNGLPSA-L 109
           K+A      L ++ +T++ HN  F+    L +     I       T++ A       +  
Sbjct: 412 KDAKKAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGISA-NLFDTMIAAWLLDPARSSY 470

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                A  +   K    K+L+ +              +       +    Y   D  +T 
Sbjct: 471 GMDKLAESILGVKTIRFKDLVKQ-------------GQNFSDIPLKEACPYAAEDADITF 517

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +K+  PL  K          E  +  L   +  +G  +        ++ +  E    +
Sbjct: 518 RFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCE 577

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQV 276
           +++  L  G   +    ++L+  LF E  L     T+T       VL +     P   ++
Sbjct: 578 KDIYRL-VGHEFNIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPAKI 636

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                            +   ++         P     +  R H
Sbjct: 637 L-------------------------------DYRALAKLKSTYTDTLPKMTD-KNGRIH 664

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q  T      + DP+   I         +R    A +G+ L+ AD + IE  +LA 
Sbjct: 665 TSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIELVILAH 724

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +Q  ++AF TG D++  T +  F V    V++D R I K +   + Y   A    ++
Sbjct: 725 LSKDQNLVEAFNTGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAF---RL 781

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           AS+  +        +K       +    +       N  + A +  ++ T   R ++   
Sbjct: 782 ASSLRIPRKRADEFIKA------YFATYSGVSGFMANVCQEAEQRGYVETLMGR-RRYLP 834

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVY 570
             +S+         +    T   G A    K   + +   +KK K +  ++L     L+ 
Sbjct: 835 AINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELII 894

Query: 571 RDVGNNRSYLNTTTRQ 586
               + R  + +  ++
Sbjct: 895 EAAESEREKVMSLVKE 910


>gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
 gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
          Length = 916

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/504 (18%), Positives = 169/504 (33%), Gaps = 131/504 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +   G  VD    H+L++ +  + T++++ +  L      +     +L  
Sbjct: 516 EMPLVPVLAKMERAGMLVDPDRLHSLSEGLATQITEVERSIRDLAGDETFNIGSPMQLSH 575

Query: 242 WLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            LF   GL  + L +T      T  +VLS   +       + + R ++   +   L+TL 
Sbjct: 576 VLFDVMGLPTKGLKKTKRGYYSTNAKVLSDLARDHEIVRLILDWREKSKIKSTY-LDTLG 634

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                DGR+  T                                +Q IT      +SDP+
Sbjct: 635 PLRRGDGRVHTT-------------------------------YNQTITATGRLSSSDPN 663

Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I     +   V++   A EG   +  D + IE R+LA ++G++  ++AF  GED + 
Sbjct: 664 LQNIPTRSELGRTVKTAFSAGEGSVFLAVDYSQIELRLLAHLSGDEHLVRAFNEGEDFHA 723

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T AR F V  ++VT D R+  K +   + Y   A    +   +  +++     ++    
Sbjct: 724 ETAARVFGVPVSEVTPDLRSRAKAVNFGIVYGQQAYGLSQ---SLHISMAEARDMID--- 777

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                  + + +  V    + +    +Q
Sbjct: 778 --------------------------------------RYYEAYPGVRTFLDNVVARAKQ 799

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
           T       +  +RR +P +  K          P  R          R+ +N         
Sbjct: 800 T--GYAETMYGRRRHIPELKAKN---------PQLRGF------GERTAMNHPM------ 836

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP-DTDEFN 643
                       Q  + DI+   M   ++          ++L VHDE+  E P D  E  
Sbjct: 837 ------------QGTAADIIKIAMARVSRRLEEEGFAAHMILQVHDELDFECPVDEVERL 884

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEG 667
            +M+  +M         +PL AE 
Sbjct: 885 TAMVRDVMEHVVD--LRVPLIAEA 906


>gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570]
          Length = 877

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/528 (18%), Positives = 169/528 (32%), Gaps = 141/528 (26%)

Query: 165 VTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           V     + ++L        L   EQ L ++   +   G  V       +    ++   KL
Sbjct: 454 VETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQA 273
            QE+  L  G   +    ++L   LF + GL LE    T+T       VL     + P  
Sbjct: 514 TQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R  A   +   +  L + + +DG++                             
Sbjct: 573 KKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------------- 602

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387
             H    Q +T      + DP+   I         +R   +   E   L+ +D + IE R
Sbjct: 603 --HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELR 660

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAK 446
           VLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + Y     
Sbjct: 661 VLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDF 720

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +++  G++       + T                                      
Sbjct: 721 ---GLSNNLGISRKEAKAYIDTYF------------------------------------ 741

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                    R   + N + +   +  + G      KRR                 LP   
Sbjct: 742 --------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------RELPDIN 778

Query: 567 SLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           S  +   G   R+ +N+                   +Q  + DIL   M+   KA    G
Sbjct: 779 SRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDKALVAGG 820

Query: 622 YD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           Y   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 821 YQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 97/688 (14%), Positives = 201/688 (29%), Gaps = 166/688 (24%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQVLKEALE 62
           +   ID        Y  +  ++  +  F +                    + Q   E   
Sbjct: 337 SYVSIDTETTSTNVY--EAQILGISVSFKEFESYYIPIETKEKKSIEREYITQKFNEFF- 393

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLS 119
            T   ++  N  F+  +        IP +      ++A     P    +L  + E     
Sbjct: 394 KTKPKLIGQNYKFDYKIFTRHGFNAIPPY---FDTMIAAYVIDPNTKVSLDFLSE----- 445

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
                  K L+    K   ++ +  +N             Y   D  +T  +FK      
Sbjct: 446 -------KYLMH---KNIKYQEIVSQNGTLKDIPLETVSNYAAEDADITFRLFKIFAKKL 495

Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                   +   E     +   + + G  +D       +Q +  E   ++ E+   + G+
Sbjct: 496 KEDNLESLMIDVEMPFSNVITEMEENGIYLDKDYLRQYSQELTKELKLIENEIIQ-SIGI 554

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             +    ++L   LF E  L L    +   T  +VL + K       ++           
Sbjct: 555 KFNLNSSKQLYRVLFDELKLVLPPNVKKHSTSIKVLEAIKDQHESIPKI----------- 603

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                               +Q+   S+               + ++ H    Q      
Sbjct: 604 --------------------IQYRKISKLKNTYTDNLIKFINAKTNKIHTNFIQAKAATG 643

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             +++ P+   I         +R      EG   + AD + IE  +LA  + +   ++AF
Sbjct: 644 RILSTAPNLQNIPIKDEKGRKIREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEAF 703

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +  ED+++ T ++ F V   +VT   R + K +   + Y   A     ++    +     
Sbjct: 704 KNKEDIHIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSA---HGLSQELSIKREEA 760

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              + +      + +  +  +   +N  + A ++ +  T                     
Sbjct: 761 QKFIDS------YFNLYSKIKIFIQNRIDFARKNGYSETLL------------------- 795

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                             ++RR +  +  +                     G  R  +N+
Sbjct: 796 ------------------KRRRYIKEINSQNHS---------------ERSGAERIAINS 822

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
           T                  +Q  + DI+   M+              I+L VHDEI+ E+
Sbjct: 823 T------------------IQGSASDIMKIAMVRVYNEFKSKNLKSKILLQVHDEILIES 864

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           P  +   A  +   M  N ++   LPL+
Sbjct: 865 PKQECEEAKTIIKEMMEN-AYPLKLPLR 891


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 906

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 107/676 (15%), Positives = 196/676 (28%), Gaps = 151/676 (22%)

Query: 16  LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAH 71
           L   G    Y  D   +       D      D     + P     L   L +       H
Sbjct: 343 LAVVGTHLAYDADATALAIVSA--DGEGRYID--TSALQPDDEAALASWLADPGPPKALH 398

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
            +      +         +        LA     P        +  L    +   +  + 
Sbjct: 399 EAKL---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLEDLSLRYLRRELR 450

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------KEQEL 185
                +    L D N     +A +         + +   + + L  ++S       E  +
Sbjct: 451 AETAEQQQLSLLDDNDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLGGMELPV 510

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G  VD+ L   L Q     + +   E      G   +    ++L+T LF 
Sbjct: 511 QRVLAGMEHTGIAVDLELLGEL-QSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQTVLFD 569

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDG 302
           E  +     T+T       + + L  +    F   +   R      + ++ L+ ++ SDG
Sbjct: 570 ELEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLTHRDVTRLKVTVDGLLASVASDG 629

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
           R+  T                                +Q I       +++P+   I   
Sbjct: 630 RIHTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIR 658

Query: 361 ---SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R   +  +G  +L+ AD + IE R++A ++ ++  ++AF TGEDL+    +R+
Sbjct: 659 TEAGRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRA 718

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V   +VT + R   K M   L Y   A    +    +                     
Sbjct: 719 FGVPIGEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKIS--------------------- 757

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                      E  K+      +R   + + L    +Q  ++G 
Sbjct: 758 --------------------------TEEAKEQMDAYFARFGGVRDYLMNIVDQARKDGY 791

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                 RR                 LP   S                + +  RE      
Sbjct: 792 TSTVLGRRRY---------------LPELDS----------------SNRQVREAAERAA 820

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-H 649
           L   I Q  + DI+   M+   KA         ++L VHDE++ E    +      L   
Sbjct: 821 LNAPI-QGSAADIIKVAMIEVDKAIKEAGLKSRMLLQVHDELLFEVAPGERERLEALARE 879

Query: 650 LMTSNPSWAKGLPLKA 665
            M    ++   +PL+ 
Sbjct: 880 KMGG--AYPLDVPLEV 893


>gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 930

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/504 (17%), Positives = 165/504 (32%), Gaps = 127/504 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  L Y    +   G  V+ A        + V   KL+QE+   T G   +    +
Sbjct: 530 YTDIEMPLIYSLFHMEQEGVKVERAELKEYGDRLKVGIAKLEQEIYQET-GHEFNINSPK 588

Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF +  L     T+T   T   VL       P   ++ + R     ++      L
Sbjct: 589 QLGEILFEQMELPGGKKTKTGYSTAADVLEKLAPDYPVVQKILDYRQLTKLNSTYA-EGL 647

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              +  DGR+ G                               + +Q IT      +++P
Sbjct: 648 AAYIGEDGRIHG-------------------------------KFNQTITATGRISSTEP 676

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I     +   +R   +  EG   V AD + IE R+LA M+G++  ++A+ + +D++
Sbjct: 677 NLQNIPVRMALGREIRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIH 736

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T ++ F+V   +VT  QR   K +   + Y   A    +     GL+++    +   +
Sbjct: 737 AITASQVFHVPLDEVTPLQRRNAKAVNFGIVYGISAFGLSE-----GLSISRKEAVEYID 791

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              E +   + F     +   +   E  ++                              
Sbjct: 792 KYFETYPGVKTFL----DGLVKQGKEQGYV------------------------------ 817

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                    +  +RR +P +   K  N +                  R  +N+       
Sbjct: 818 -------TTLYGRRRPIPEL---KSANFMQRQF------------GERVAMNSP------ 849

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + D++   M+   +          IVL +HDE++ ET   + E 
Sbjct: 850 ------------IQGTAADVMKIAMIAVDRELKKRGLKSRIVLQIHDELLIETARDEIEA 897

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
              +L   M         L ++AE
Sbjct: 898 VKEILTDKMKHAADLRVSLEVEAE 921


>gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
 gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
          Length = 886

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 105/638 (16%), Positives = 205/638 (32%), Gaps = 157/638 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L++ LE+  +     +       L     LDI        ++LA                
Sbjct: 367 LRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYLVNNEN-------- 415

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +S  + E   L   +      E      K    E    F       V + +     LE
Sbjct: 416 --NSNDLGEVAHLYGDYSVKTDLEVYGKGKKKAVPEDDEFFEHLAAKVVVIEKLKQPLLE 473

Query: 177 PLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            L   EQ+  Y         +   +   G  V+ ++ + L     ++  +L+ ++     
Sbjct: 474 KLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFALKLQELEHKIYQQA- 532

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMRAS 284
           G   +    ++L   LF +  L     T+T     +   ++L   +P   ++ + R  A 
Sbjct: 533 GEEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQIA- 591

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     +  L+E +  DGR+                               H    Q +T
Sbjct: 592 KIQNTYVKGLLECIQPDGRI-------------------------------HTRYLQTLT 620

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQW 397
                 + DP+   I         +R   + S  +G      D + +E RVLA ++G++ 
Sbjct: 621 ATGRLSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEH 679

Query: 398 KLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +AF++G D++  T  + F++  P +VT   R   K +   + Y         ++   G
Sbjct: 680 MQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLG 736

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                    E +P                          
Sbjct: 737 ISRKQAKTFIDN----------------YFEQYP-------------------------- 754

Query: 517 VSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             ++ + + +A ++  E G A  I  +RR +P ++ K           + RS        
Sbjct: 755 --QIKDYMDKAIKEAREKGYAETIMHRRRYLPDIHSKNF---------NVRSFA------ 797

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629
            R+ +N+                   +Q  + DI+   M+N  K          +VL VH
Sbjct: 798 ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVH 839

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ + P  +      +   +M S  +    +PL A+
Sbjct: 840 DELIFDVPKAELDTIKKIVPEVMQSAVT--LDVPLIAD 875


>gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 876

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 190/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +         + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVAFITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 VFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603]
 gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603]
          Length = 876

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 100/629 (15%), Positives = 190/629 (30%), Gaps = 136/629 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
             L   LEN +     +++     V      LDI I      ++L+     P   +  V 
Sbjct: 356 SDLVNWLENPNTAKTVYDAKKTYVVAHR---LDIDIQNIQFDVMLSSYIIDPSRTIDDVN 412

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             + L  Q     ++ +A + KG+ H    D     H  +        K ++    + + 
Sbjct: 413 SVVSLYGQH--YVQDNVAIYGKGKKHHIPEDEILNKHVASIIEAVSASKSEMQNQLKEYN 470

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +   L+  E  L  +   + + G   DV     + + +  +   L + +     G   + 
Sbjct: 471 QESLLADLELPLAEILSEMEEIGIYTDVNDLQHMEKEIQEKLDVLIKNIHE-AAGEEFNI 529

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF    L +   T+T       VL   +   P    +   R          
Sbjct: 530 NSPKQLGVVLFETLELPVIKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQL-------- 581

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                                  S+             +   +R H   +Q +       
Sbjct: 582 -----------------------SKLQSTYVEGLQK-VISEDNRIHTRFNQTLAQTGRLS 617

Query: 351 TSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           + DP+   I         +R      S    ++ AD + IE RVLA +  ++   +AF  
Sbjct: 618 SVDPNLQNIPIRLEEGRKIRKAFKPTSTDSVILSADYSQIELRVLAHITQDESMKEAFIN 677

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T  + F+V   +V    R   K +   + Y        +   + G+       
Sbjct: 678 GHDIHTATAMKVFDVGADEVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAKA 734

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +       ++ D+    +    +  + A    F+ T                       
Sbjct: 735 FID------DYLDSFPGVKQYMSDIVKDAKAQDFVETLL--------------------- 767

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                            +RR +P +  +           + RS         R+ +NT  
Sbjct: 768 ----------------HRRRYIPDITSRNF---------NLRSFA------ERTAMNTP- 795

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMN------ATKAGYDIVLTVHDEIVCETPD 638
                            +Q  + DI+   M+        TK    ++L VHDE++ E P 
Sbjct: 796 -----------------IQGSAADIIKLAMVQFNKEVQHTKYHAKLLLQVHDELIFEVPK 838

Query: 639 TDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            +  + S  +  +M S       +PLK E
Sbjct: 839 DEVESFSQFVEDIMESALE--LDVPLKVE 865


>gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M]
 gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
          Length = 899

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/504 (18%), Positives = 164/504 (32%), Gaps = 129/504 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  + ++   +   G  VD+ +   L Q    ++ +   E      G   +    +
Sbjct: 496 LADMELPVQHVLAEMETAGIAVDLTMLGGL-QSHFADQIRDAAEAAYAVIGKQINLGSPK 554

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTL 294
           +L+  LF E G+     T+T       + + L  +    F   + A R      + ++ L
Sbjct: 555 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGL 614

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           + ++  DGR+  T                                +Q I       +++P
Sbjct: 615 LNSVADDGRIHTT-------------------------------FNQTIAATGRLSSTEP 643

Query: 355 DPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   +  +G  +L+ AD + IE R++A ++ ++  ++AF TGEDL
Sbjct: 644 NLQNIPIRTDAGRQIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDL 703

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    +R+F V   +VT + R   K M   L Y   A         +             
Sbjct: 704 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSSQLKIS------------- 750

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                              E  K    Q  SR   + + L    
Sbjct: 751 ----------------------------------TEDAKVQMDQYFSRFGGVRDYLMAVV 776

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           EQ  ++G       RR                 LP                L+++ RQ  
Sbjct: 777 EQARKDGYTSTVLGRRRY---------------LPE---------------LDSSNRQ-V 805

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642
           RE      L   I Q  + DI+   M+   KA         ++L VHDE++ E    +  
Sbjct: 806 REAAERAALNAPI-QGSAADIIKVAMIEVDKALKEHALKSRMLLQVHDELLFEVAAGERE 864

Query: 643 NASMLYH-LMTSNPSWAKGLPLKA 665
               L    M S  ++   +PL+ 
Sbjct: 865 QIEALVRDKMGS--AYPLDVPLEV 886


>gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 876

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 192/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      L+I I      ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASH--RLEIDIQNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 913

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 113/673 (16%), Positives = 195/673 (28%), Gaps = 145/673 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSY 74
           L   G    A D      A    D      D    DP     L   L +       H + 
Sbjct: 350 LAVAGTHL-AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK 408

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
                +         +        LA     P        +  L    +   +  +    
Sbjct: 409 L---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLDDLALRYLRRELRAEN 460

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188
             +    L D       +A +         + +   + + L        LS  E  +  +
Sbjct: 461 PQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRV 520

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              + + G  VD+ L   L Q     + +   E      G   +    ++L+  LF E  
Sbjct: 521 LAGMENAGIAVDLDLLSEL-QSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQ 579

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLR 305
           +     T+T       + + L  +    F   + A R A    + ++ L+ ++ SDGR+ 
Sbjct: 580 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRIH 639

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
            T                                +Q I       +++P+   I      
Sbjct: 640 TT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTEA 668

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               R   +  +G  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F V
Sbjct: 669 GRRTRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGV 728

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT + R   K M   L Y   A    +    +                        
Sbjct: 729 PIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIS------------------------ 764

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                   E  K+      +R   + + LH   EQ  ++G    
Sbjct: 765 -----------------------TEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTST 801

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              RR                 LP   S                + +  RE      L  
Sbjct: 802 VLGRRRY---------------LPELDS----------------SNRQVREAAERAALNA 830

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT 652
            I Q  + DI+   M+   KA         I+L VHDE++ E    +      L    M 
Sbjct: 831 PI-QGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMG 889

Query: 653 SNPSWAKGLPLKA 665
              ++   +PL+ 
Sbjct: 890 G--AYPLDVPLEV 900


>gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122]
 gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122]
          Length = 876

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L   LEN +   V +++  +  V      +DI        ++LA     P   +  V  
Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            + L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + +
Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           +E L+  E  L  +   + + G   DV   H L ++    + KLD  + ++    G   +
Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA +  ++   +AF 
Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +   + G+      
Sbjct: 677 NGDDIHTATAMKVFGVEADQVDILMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A    ++ T   R ++      SR   L   
Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T   G A    K   V                                     
Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             Q  +E TY  KL                           +L VHDE++ E P ++  +
Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843

Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666
            S  +  +M +       +PLK +
Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865


>gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/272 (30%), Positives = 117/272 (43%), Gaps = 60/272 (22%)

Query: 416 SFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAP 472
            F V   ++TK    R  GK+ ELALGY G   A   M +   GL+ +            
Sbjct: 1   MFGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMGALAMGLSEDE----------- 49

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                            +   WR  +  +++ W ++ +A  + +
Sbjct: 50  ------------------------------LPGLVSTWRNANPHITQFWWDVDEAAVRAV 79

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT------ 584
                   RK   V L+  +     L  MLPSGR L Y    +G N+   +  T      
Sbjct: 80  RE------RKETQVGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGE 133

Query: 585 -RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
            ++  R  TYG KL ENIVQ  SRDILAE MM   KAG+ IV  VHDE V E P+  + +
Sbjct: 134 NKKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEG-KSS 192

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              +  +M   PSW  GLPL+A+GYE + Y+K
Sbjct: 193 VEEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/491 (19%), Positives = 160/491 (32%), Gaps = 128/491 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   + + G  VD          V  E  ++ QE+     G   + R  ++L  
Sbjct: 614 ELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQ-FNIRSAQQLGE 672

Query: 242 WLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            LF   GL     T     TT Q  L       P    + + R +  +     L  L + 
Sbjct: 673 LLFGTLGLPTVGKTRGGQATTSQDALEKLSGRHPVVDLILDFR-KLEKLRSTYLEPLPKL 731

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +++ GR+                               H   +Q+ T      +S+P+  
Sbjct: 732 VDAAGRI-------------------------------HSTFNQLATATGRLSSSNPNLQ 760

Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I     +   +RSC  A+EG  LV AD + IE RVLA M+ +   L AF  G D++  T
Sbjct: 761 NIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRT 820

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
               ++ AP  VT DQR   K +   L Y  G    QK+     + +N            
Sbjct: 821 AGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGP---QKLGQELRITVNEA---------- 867

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                          ++  + +  +   +   ++ +  A  +  
Sbjct: 868 -------------------------------KQFIERYFSRLQHLRNFYDNVEAAARE-- 894

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           +     +A +RR +P ++                              NT  R   R   
Sbjct: 895 QGHVTTLAGRRRLLPEMHS----------------------------ENTQLRSQARR-- 924

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPD-TDEFNAS 645
              +    ++Q  + DI+   M+ A            ++L VHDE++ E P+   +    
Sbjct: 925 ---QAINTLIQGSAADIIKLAMLAAHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGE 981

Query: 646 MLYHLMTSNPS 656
            L  LM+    
Sbjct: 982 RLALLMSEVRP 992


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 373 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 425

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 426 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 482

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 483 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 532

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 533 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 593 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 651

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 652 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 680

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 681 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 740

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A    
Sbjct: 741 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 797

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 798 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 850

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 851 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 903


>gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
 gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
          Length = 886

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 110/664 (16%), Positives = 198/664 (29%), Gaps = 144/664 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y E     L  F   D    L     D +    LK+ LE+  V     N+  +   L   
Sbjct: 334 YHESP---LAGFVIGDGKWWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 389

Query: 84  FNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
             L + +      L+LA      S     L  +  A      + +E  E+  +  K    
Sbjct: 390 --LGVDLAGVDFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDE--EVYGKGAK--RA 443

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
               D     H           K  +       ++L      E+ L  +   +   G  V
Sbjct: 444 IPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHV 503

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D A    +   +     +L+Q +     G   +    ++L   LF +  L +   T+T  
Sbjct: 504 DAATLKEMGSKLVEREAELEQAIYQEA-GEEFNINSPKQLGVILFEKMKLPVIKKTKTGY 562

Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                VL       P    +   R   S+     +  L++ ++ D               
Sbjct: 563 STAVDVLEKLADRAPIVQDILAYRQ-ISKLQSTYITGLLKVIHQDD-------------- 607

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                            + H    Q +T      + DP+   I         +R     S
Sbjct: 608 ----------------QKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPS 651

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQR 429
             G K+  +D + +E RVLA + G++     F  G+D++  T  R F++ +  +VT + R
Sbjct: 652 APGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMR 711

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++       +++      +            + 
Sbjct: 712 RQAKAVNFGIVYGISDY---GLAQNIHVSRPQAHEFIQS------YFKEFPGVEKYVHDI 762

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            E A +  ++                                       +  +RR +P +
Sbjct: 763 VELAKQQGYVE-------------------------------------TLTHRRRYLPEI 785

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
           + K             RS         R  +NT                   +Q  + DI
Sbjct: 786 HAKSFTQ---------RSFA------ERMAMNTP------------------IQGSAADI 812

Query: 610 LAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           +   M+   KA         ++L +HDE+V E P+ +      L   +M S       +P
Sbjct: 813 IKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPSIMDSAVK--LDVP 870

Query: 663 LKAE 666
           LK E
Sbjct: 871 LKVE 874


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 536 RFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A    
Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906


>gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO]
 gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO]
          Length = 868

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           + +       +++      L                ++L          +    G A   
Sbjct: 352 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 408

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177
               ++  + +  +  K         +  P   E   LF  +    V     +  +L   
Sbjct: 409 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 456

Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           L+ K         E  L  +   +   G  VD      +         +++Q++     G
Sbjct: 457 LAEKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 515

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A  
Sbjct: 516 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 575

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ + SDG++                               H    Q +T 
Sbjct: 576 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 603

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++   
Sbjct: 604 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 663

Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            AF  G+D++ +T  R F +     VT + R   K +   + Y        +     G++
Sbjct: 664 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 720

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  + T      + +     +   E     A +  ++                   
Sbjct: 721 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 756

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                               +  +RR +P +    +  N  +     RS         R+
Sbjct: 757 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 782

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
            +NT                   +Q  + DIL   M+   K          ++L VHDE+
Sbjct: 783 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 824

Query: 633 VCETPDTDEFNASML-YHLMTSN 654
           V E P+ +  +   L   +M   
Sbjct: 825 VFEVPEKELESLDKLVKEVMEQA 847


>gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
 gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
          Length = 870

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 441 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIVVKKETLLEMQAENE 500

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 501 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 559

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 560 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 595

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 596 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 647

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 648 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 707

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 708 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 734

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 735 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 765

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 766 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 807

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 808 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 859


>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
 gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
          Length = 949

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 100/640 (15%), Positives = 191/640 (29%), Gaps = 156/640 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
            +   +   D   + HN  ++  +LK      + +   +   ++A     P     L  V
Sbjct: 426 DVLGPVLARDTEKLGHNLKYDLLLLKQH---GVEVGGTLFDTMVAHYLVAPEENHNLDDV 482

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             +  + + KM    +LI         + +                 Y   D  ++  + 
Sbjct: 483 ARS--VLNYKMVPIADLIG---DETDRDSMR-------EVDVETAAPYACEDADISYRLA 530

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             LE               E  L ++  T+   G  +D  +   +   ++   + +++E+
Sbjct: 531 DELEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEV 590

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    ++L   LF +  L +   T T    T + VL            V +
Sbjct: 591 FELA-GEEFNINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLD 649

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R      +  KL                                      P   R H  
Sbjct: 650 WR------STYKL-------------------------KSTYLDSLGELVHPETGRLHTS 678

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            +Q  T      +SDP+   I         +R   +  +G  L+ AD A IE R+LA M+
Sbjct: 679 FNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMS 738

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+      F+ G D++    AR + + P  VT +QR+  K +   + Y         +A 
Sbjct: 739 GDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISP---WGLAQ 795

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              + ++    ++K                                          +R+ 
Sbjct: 796 RMRMPVDEAQDIIK-----------------------------------------QYRKS 814

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  VS+L NEL +  +   +     +  +RR +P +                        
Sbjct: 815 YPGVSQLLNELVEKAQD--KGYAETLLGRRRYLPDIDSS--------------------- 851

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLT 627
                  N+  R                +Q    D++   M               ++L 
Sbjct: 852 -------NSNARSAAERVA-----VNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQ 899

Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           VHDE+V E P  + +   +M+   M         +P+  +
Sbjct: 900 VHDELVFEVPPDELDAAQTMIDDEMRDALPL-DDVPVTVD 938


>gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
 gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
          Length = 879

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/501 (18%), Positives = 150/501 (29%), Gaps = 130/501 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L ++   +  RG  VD A    L    + +          L      +    ++L+ 
Sbjct: 479 EVPLTHILAEMEARGIAVDKAALEELAADYEAQIADEVTAARELAEDDQLNLSSPKQLQK 538

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAM 298
            LF + GL     T+T      +  +KL  Q    F N + A R        ++ L+ A+
Sbjct: 539 VLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAHREYQKMKSTIDGLINAI 598

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           + DGR+R T    G                                      +S+P+   
Sbjct: 599 DGDGRIRTTFNQKG-------------------------------AATGRLSSSEPNLQN 627

Query: 359 II-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +RS     EG   L+ AD + IE RV+A ++ +   ++A+  GEDL+   
Sbjct: 628 IPVRTEAGRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHNYV 687

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +R F+V   +VT + R   K +   L Y   A    +     G++      +       
Sbjct: 688 GSRVFDVPVDEVTPELRRRVKALSYGLVYGLSAFGLSQ---QLGISPGEAKGI------- 737

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                                      R   +   L +  E   
Sbjct: 738 -------------------------------------MENYFDRFGGVKRYLDKVVEAAK 760

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           E G       RR             L  +  S R                      RE  
Sbjct: 761 ETGYTETLYGRRRY-----------LPELASSNRV--------------------ARENA 789

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646
               L   I Q  + DI+   M+   +A         ++L VHDE+V E    +      
Sbjct: 790 ERAALNAPI-QGTAADIIKLAMLRVDRALRNANLKSRVLLQVHDELVLEIAPGE---LEQ 845

Query: 647 LYHLMTSNPSWAKGL--PLKA 665
           +  L+  N   A  L  PL  
Sbjct: 846 IQQLLEENMDSAASLRVPLDV 866


>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 924

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 109/683 (15%), Positives = 200/683 (29%), Gaps = 173/683 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-------CVHDPVMPQV 56
           L ID ET S        +  +  D  ++  +                   C+    + + 
Sbjct: 346 LAIDTETSS--------LDAHQTD--LVGISLSTKIGKACYIPIGHKFKGCLKKETVIKK 395

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113
           LK  LE+  V  +  N  F+  VL       I ++    T++++           +  + 
Sbjct: 396 LKPLLEDKSVKKIGQNIKFDFIVLYKH---GINMNSMEDTMLMSYVLDAGKNRHNMDTLS 452

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E       K    KE++    K                       EY   D  +T  ++K
Sbjct: 453 EIH--LQHKTISFKEIVGTGKKEINFS----------DVELDKAMEYAAEDADITYRLYK 500

Query: 174 ------RLEPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                 +LE L++     E+ L  +   +   G  +D      L++  + + +KL++E+ 
Sbjct: 501 IFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVF 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-KLTPQAIQVFN 278
            ++     +    ++L   ++ +  + +   T      T   VL     K       + +
Sbjct: 561 KISK-KKFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILD 619

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R                                 S+         P    P   R H  
Sbjct: 620 WRQ-------------------------------VSKLKNTYSDALPEHINPNTKRVHTS 648

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                T      +SDP+   I         +R   IA +G  L+ AD   IE R+LA +A
Sbjct: 649 FLLAATTTGRLASSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLA 708

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
             +   KAF   ED++  T ++ FNV   +V +D R   K +   + Y        K  +
Sbjct: 709 EVKELKKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQIN 768

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            +                     +A+ F        PE       I    +   K  R+ 
Sbjct: 769 VSN-------------------HEADEFLNAYFLKFPE-------IKIYMDNTIKFCRKS 802

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                                   I  R+     +     +  N                
Sbjct: 803 -------------------GYVTNIFGRRSHFNGINDKNFNVRNF--------------- 828

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVL 626
              R+ +N                    +Q  + +I+   M+   K           I+L
Sbjct: 829 -QERAAINAP------------------IQGSASEIMRLAMIRLNKKFESIKNNKSKILL 869

Query: 627 TVHDEIVCETPDTDEFNASMLYH 649
            +HDE++ E P  +  N + +  
Sbjct: 870 QIHDELIFEVPVKEVKNITEIIK 892


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 536 RFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A    
Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906


>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
 gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
          Length = 902

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/542 (16%), Positives = 157/542 (28%), Gaps = 66/542 (12%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-------ALKAVG 113
           L  +    + H+      V K      I +       ++A     P         + A  
Sbjct: 384 LGRSRPAKIGHDLKTAWIVFKKH---GIELRGIAFDTMVAAYLLDPGKQNYGIDRVAAEC 440

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               + S +   GK                        +A R      K  +     + +
Sbjct: 441 LGENIDSYEDVTGKGKSQVGFD-TIDIGRAAAYSCAAADAARRMHPVLKRKLD-ESRLTE 498

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
             E +   E  L  +   +  RG   D     +L+        +    +  L      + 
Sbjct: 499 LFEKI---ELPLITVLARMEFRGITADAEKLESLSIDFQKALDRTADTIYDLAK-EKFNI 554

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           +  ++L   LF + GL +   T++       VL       P A  V   R  A       
Sbjct: 555 QSPKQLAYILFEKLGLRVVKKTKSGPSTDMAVLEELALEHPIADHVLVFRTLA------- 607

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                                   +              PR  R H   +Q +       
Sbjct: 608 ------------------------KLKGTYADALGKLINPRTGRIHTSYNQTVAATGRLS 643

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +SDP+   I         +RS  I + G  L+ AD + IE R+LA  + ++  L+AF   
Sbjct: 644 SSDPNLQNIPIRTEEGRKIRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDD 703

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T A  F V+P +VT + R   K +   + Y  G      +A    ++  T    
Sbjct: 704 EDIHRRTAAEMFGVSPIEVTPEMRRQAKTINFGIIYGMGPF---GLAQRLRISTKTARTA 760

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +      + +     F     E        +  +G      ++   +  SR   +     
Sbjct: 761 ID--KYFQGYRGVRRFIDTTIELARRLGYSETLLGR-----RRFIPELQSRNKTIRQLGE 813

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLNTTT 584
           +    T   G A    K+  +             +++L     LV+       +      
Sbjct: 814 RLAINTPLQGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAAAQELV 873

Query: 585 RQ 586
           R+
Sbjct: 874 RR 875


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A    
Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 922

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 89/498 (17%), Positives = 163/498 (32%), Gaps = 115/498 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           +S  +  L  +   +   G  VD A+     +    E   +  E+  L  G   +     
Sbjct: 521 VSQVDLPLVEVLTQMERDGVAVDEAVLQRQTEAFSSEIADIADEIYKLA-GHEFNLNSPR 579

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSN---KKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF E GL      ++            + L P    +   RM +   +       
Sbjct: 580 QLAEVLFNELGLPGGKKLKSGYSTSAEDLMHLQDLHPIVDLILRYRMLSKLLST------ 633

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                    + G  +++ A                    R H    Q +T      +SDP
Sbjct: 634 --------FIVGLHKYIAA------------------DHRIHTTFHQTLTQTGRLSSSDP 667

Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I         +R+  IA+ G  L+ AD + IE R+LA ++G+   LKAF   ED++
Sbjct: 668 NLQNIPARTEEGRRIRAAFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIH 727

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T AR F++ P  VT + R +GK +  ++ Y   A +    A    +++    + +   
Sbjct: 728 ALTAARVFHMDPVDVTSEHRRVGKTINFSIVYGISAFSL---AQDLHISVAEAKNYIAEY 784

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
            A                                          + ++    N+L +  +
Sbjct: 785 YA-----------------------------------------TYPQIKAYLNDLVERAK 803

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
             I+     + ++RR +P +  K     L                  R  +NT  +    
Sbjct: 804 --IDGYVETMFKRRRYIPELKSKNYNRRLF---------------GERVAMNTPIQ---- 842

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                G   + +  A+         +   K    ++L +HDE+V E P+ +    + L  
Sbjct: 843 -----GTAADIMRLAMVNLARK---LREKKLKSHMILQIHDELVLEVPEPEFAEVAELLR 894

Query: 650 -LMTSNPSWAKGLPLKAE 666
             M         LP++ E
Sbjct: 895 NEMERVIDLKVSLPVELE 912


>gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
 gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
          Length = 877

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/555 (15%), Positives = 170/555 (30%), Gaps = 141/555 (25%)

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188
                        P +   +  +  Y          + ++L+        ++ E  L Y 
Sbjct: 430 PKTKKNETPSDEIPENILKYACYNAYVAY--KAKDALTEKLKETEMLDIYNNVEIPLTYA 487

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V         + +      L++++ +   G   +    ++L   LF E  
Sbjct: 488 LYDMEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEA-GHEFNINSPKQLGEILFGEMQ 546

Query: 249 LHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L     T+T       VL   +   P   ++   R  A                      
Sbjct: 547 LPGGKKTKTGYSTSASVLEKLEPDYPFVSKILEYRQLA---------------------- 584

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----I 360
                    +             +   +R H + +Q IT      +++P+   I     +
Sbjct: 585 ---------KLKSTYADGLAVY-IGEDNRIHGKFNQTITATGRISSTEPNLQNIPVRMPL 634

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   I  EG   + AD + IE R+LA M+ ++  + A+   +D++  T +  F+V 
Sbjct: 635 GREIRKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATASLVFHVP 694

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VTK+QR+  K +   + Y   +     +++   ++       +K             
Sbjct: 695 LEEVTKEQRSNAKAVNFGIVYGISSF---GLSNDLSISRKEAEQYIKDYFISYP------ 745

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                                                  + N L  + ++  E G ++  
Sbjct: 746 --------------------------------------GIKNYLDNSVKEAKEKGYSVTM 767

Query: 541 -RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             +RR +P              L SG  +  R  G  R  +N+                 
Sbjct: 768 FGRRRPIP-------------ELTSGNFMQ-RQFGE-RVAMNSP---------------- 796

Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653
             +Q  + DI+   M+N  K          IVL VHDE++ E  + +      +  ++  
Sbjct: 797 --IQGSAADIMKIAMINVAKELKEKDLKSKIVLQVHDELLIEAYENE---VEQVKDILKR 851

Query: 654 NPSWAKGL--PLKAE 666
           N   A  L  PL  +
Sbjct: 852 NMEQAAHLNVPLDVD 866


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 373 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 425

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 426 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 482

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 483 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 532

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 533 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 593 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 651

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 652 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 680

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 681 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 740

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A    
Sbjct: 741 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 797

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 798 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 850

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 851 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 903


>gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
 gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
          Length = 875

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 101/640 (15%), Positives = 200/640 (31%), Gaps = 157/640 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L+  LE+        +S   +  LK      I +      L+LA     P+       
Sbjct: 354 DTLRRWLEDATKIKYMSDSKAAQASLKRA---GIQLAGVDFDLLLASYINNPALSGDDIA 410

Query: 115 ALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            L   L    ++  + +  +  K         R  P+  +  +               + 
Sbjct: 411 TLARELGYYDVQADEAVYGKGAK---------RAIPDLDQLAQHVSRKA----FAVWSLQ 457

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            +LE L             E  L  +   +   G  V+ A    + Q ++ +   ++QE+
Sbjct: 458 PKLEALLKDNEQFDLYKNLELPLAGILGEMESEGITVNRATLEKMGQELNDKLVVIEQEI 517

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279
            +   G   +    ++L   LF + GL +   T+T   T   VL   +        +   
Sbjct: 518 YAEA-GETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQSEHAIIEHILLY 576

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     +  L++ ++                                 S+ H   
Sbjct: 577 RQL-GKLQSTYIEGLLKEIHES------------------------------NSKVHTRF 605

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393
            Q +T      ++DP+   I         +R   + S E   L  AD + IE RVLA M+
Sbjct: 606 QQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEDWILFSADYSQIELRVLAHMS 665

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +Q  ++AF  G D++  T    F+V+  +V  + R   K +   + Y        +   
Sbjct: 666 EDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVYGISDYGLSQ--- 722

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +     A+ +      E++  +    +   ++  ++A  + ++ T            
Sbjct: 723 NLDITRKEAANFI------EKYFASFPGVKQYMDDIVQNAKFNGYVTTILN--------- 767

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                                       +RR +P +              + RS      
Sbjct: 768 ----------------------------RRRYLPDITSSNF---------NLRSFA---- 786

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DI+ + M++        K    ++L 
Sbjct: 787 --ERTAMNTP------------------IQGSAADIIKKAMIDMDARLKKEKMQAKLLLQ 826

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           VHDE++ E P  +      +   +M +    A  +PLK +
Sbjct: 827 VHDELIFEAPKEEIALLEKIVPEVMENAIELA--VPLKVD 864


>gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974]
 gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2]
          Length = 877

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIVVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 924

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 110/676 (16%), Positives = 203/676 (30%), Gaps = 159/676 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET S +D  +  +   +    +    +    H  +   C+    + + LK  LE+
Sbjct: 346 LAIDTET-SSLDAHQTDLVGISLSTKIGQACYIPIGHKFK--GCLKKETVIKKLKPLLED 402

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  +  N  F+  VL       I ++    T++++           +  + E      
Sbjct: 403 KSVKKIGQNIKFDFIVLYKQ---GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIH--LQ 457

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK------R 174
            K    KE++    K                       EY   D  +T  ++K      +
Sbjct: 458 HKTISFKEIVGTGKKEINFS----------DVELDKAMEYAAEDADITYRLYKIFSKNLK 507

Query: 175 LEPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           LE L++     E+ L  +   +   G  +D      L++  + + +KL++E+  ++    
Sbjct: 508 LEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVFKISK-KE 566

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-KLTPQAIQVFNNRMRASR 285
            +    ++L   ++ +  + +   T      T   VL     K       + + R     
Sbjct: 567 FNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILDWRQ---- 622

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                       S+         P    P   R H       T 
Sbjct: 623 ---------------------------VSKLKNTYSDALPEHINPNTKRVHTSFLLAATT 655

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +SDP+   I         +R   IA +G  L+ AD   IE R+LA +A  +   K
Sbjct: 656 TGRLASSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKK 715

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF   ED++  T ++ FNV   +V +D R   K +   + Y        K  + +     
Sbjct: 716 AFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSN---- 771

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                           +A+ F        PE       I    +   K  R+        
Sbjct: 772 ---------------HEADEFLNAYFLKFPE-------IKIYMDNTIKFCRKS------- 802

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                            I  R+     +     +  N                   R+ +
Sbjct: 803 ------------GYVTNIFGRRSHFNGINDKNFNVRNF----------------QERAAI 834

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEIV 633
           N                    +Q  + +I+   M+   K           I+L +HDE++
Sbjct: 835 NAP------------------IQGSASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELI 876

Query: 634 CETPDTDEFNASMLYH 649
            E P  +  N + +  
Sbjct: 877 FEVPVKEVKNITEIIK 892


>gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39]
 gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I
 gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39]
          Length = 877

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 373 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 425

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 426 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 482

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 483 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 532

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 533 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 593 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 651

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 652 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 680

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 681 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 740

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A    
Sbjct: 741 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 797

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 798 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 850

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 851 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 903


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A    
Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 96/630 (15%), Positives = 186/630 (29%), Gaps = 149/630 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119
           L +        ++      LK    +++        L+LA     P+     V    K+ 
Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419

Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
             +     + +  +  K         R+ P+                 + R     L   
Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470

Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              E L   EQ L  +   +   G  VD      +   +  +   ++Q +  L  G   +
Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELA-GQEFN 529

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T       VL            + + R    +    
Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ ++ D                                + H   +Q +T     
Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618

Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +++P+   I         +R   + SE G  +  AD + IE RVLA +A +   ++AF 
Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T    F+V+  +VT   R   K +   + Y         +A    +     A
Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +      E +  +    +   EN  + A +  ++ T                      
Sbjct: 736 EFI------ERYFASFPGVKRYMENIVQEAKQKGYVTTLL-------------------- 769

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                             +RR +P +                R+   R     R  +NT 
Sbjct: 770 -----------------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP 797

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637
                             +Q  + DI+ + M++        +    ++L VHDE++ E P
Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
             +      L   +M         +PLK +
Sbjct: 840 KEEMERLCRLVPEVMEQAVE--LRVPLKVD 867


>gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905]
 gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905]
          Length = 875

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/666 (15%), Positives = 199/666 (29%), Gaps = 157/666 (23%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
              L      D     +          +L+  LE++       +S   +  LK      I
Sbjct: 328 TCALLGIALSDGNKTQYIPFDIAAKSDILRCWLEDSSKIKYMSDSKASQAALKRA---GI 384

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRN 146
            +      LVLA     P         L   L    ++  + +  +  K         R 
Sbjct: 385 QLAGVDFDLVLASYINNPGLSGDDVATLARELGYYDVQADETVYGKGAK---------RA 435

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRG 196
            P   +  +               +  +LE L  +          E  L  +   +   G
Sbjct: 436 IPEIDKLAQHVSRKA----YAVWSLQPKLEALLKENEQFDLYKDLELPLAAILGEMESEG 491

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             V+ A    + Q ++ +   L+QE+ +   G   +    ++L   LF + GL +   T+
Sbjct: 492 ITVNRATLEKMGQELNEKLVVLEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKKTK 550

Query: 257 T---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           T   T   VL   K        +   R    +     +  L++ ++              
Sbjct: 551 TGYSTAADVLEKLKSEHAIIEYILLYRQL-GKLQSTYIEGLLKEIHE------------- 596

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                            + S+ H    Q +T      ++DP+   I         +R   
Sbjct: 597 -----------------KDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAF 639

Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           + S E   L  AD + IE RVLA M+ ++  ++AF  G D++  T    F+V+  +V  +
Sbjct: 640 VPSNENWILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSN 699

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y        +      +     A  +    A           +   +
Sbjct: 700 MRRAAKAVNFGIVYGISDYGLSQ---NLDITRKEAATFIDKYFASFP------GVKQYMD 750

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
           +  ++A  + ++ T                                        +RR +P
Sbjct: 751 DIVQNAKFNGYVTTILN-------------------------------------RRRYLP 773

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
            +              + RS         R+ +NT                   +Q  + 
Sbjct: 774 DITSSNF---------NLRSFA------ERTAMNTP------------------IQGSAA 800

Query: 608 DILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660
           DI+ + M++             ++L VHDE++ E P  +      +   +M +       
Sbjct: 801 DIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIE--LS 858

Query: 661 LPLKAE 666
           +PLK +
Sbjct: 859 VPLKVD 864


>gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 912

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 113/662 (17%), Positives = 191/662 (28%), Gaps = 146/662 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLD 87
            +   AF   D      D             A L + ++  + H+       L A     
Sbjct: 359 DLKAVAFATADGEGAYVDVTAMDEADDRALSAWLADPEIRKIGHDLK---VPLHAVRARG 415

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                      LA     P           L    +      +         +       
Sbjct: 416 WTFGGLNMDTALAAYLARPGQ-----RTFGLDDLALRYLHRELRSEAGDGDGQLSLLDGG 470

Query: 148 PNHREAWRLFGEYCKGDVTVTRE--IFKRLEPL------SSKEQELWYLDQTINDRGYCV 199
            +  E   +  E  K          +   LE L      +  E  L  +   +   G  V
Sbjct: 471 ADELEQKEISAELVKARAIFELAGALAAELEELGGAKLLAELELPLLEVITELEAAGIAV 530

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D      L        T+  +    +  G   +    ++L+  LF E G+     T+T  
Sbjct: 531 DTDQLTELEAHYLSRVTQAAESAYEVI-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGY 589

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                + + L  +    F   +   R A      +  L++++  DGR+  T         
Sbjct: 590 TTDADALQSLFEKTEHPFLQHLLEHRDATRLRTTVEGLIKSVADDGRIHTT--------- 640

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                                 L Q I       + +P+   I         +R   +  
Sbjct: 641 ----------------------LQQTIAATGRLSSIEPNLQNIPVRTEEGRRIRDAFVVG 678

Query: 372 EGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           +G  +L+ AD + IE R++A ++ ++  ++AF +GEDL+    +R+F+V  A++T +QR 
Sbjct: 679 DGYAELMTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRY 738

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K M   L Y   A    +    +                                   
Sbjct: 739 RVKAMSYGLAYGLSAYGLSQQLKIS----------------------------------- 763

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                        E  K+      SR   + + L     +  + G       RR      
Sbjct: 764 ------------TEDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIFGRRRY---- 807

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                      LP                LN+  RQ  RE      L   I Q  + DI+
Sbjct: 808 -----------LP---------------DLNSDNRQ-RREMAERMALNAPI-QGSAADII 839

Query: 611 AEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPL 663
              M+N  +A         ++L VHDE+V E  D +  +   L    M S    A  +PL
Sbjct: 840 KVAMLNVHRALAEAGARSRVLLQVHDELVLEIADGERSDVEKLVREGMGSAAELA--VPL 897

Query: 664 KA 665
           + 
Sbjct: 898 EV 899


>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
          Length = 908

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 112/674 (16%), Positives = 194/674 (28%), Gaps = 147/674 (21%)

Query: 16  LTKCGIC-KYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNS 73
           L   G    Y  D   +       D      D    DP     L   L +       H +
Sbjct: 345 LAVVGTHLAYDADATALAIVSA--DGEGRYIDTATLDPEDEAALASWLADPGPPKALHEA 402

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
                 +         +        LA     P        +  L    +   +  +   
Sbjct: 403 KL---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLDDLSLRYLRRELRAE 454

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWY 187
              +    L D       +A +         + +   + + L        LS  E  +  
Sbjct: 455 NPEQQQLSLLDDTDGTDDQAVQTLLLRAVAVLDLADALDEELARINSTSLLSGMELPVQR 514

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   + + G  VD+ L   L Q       +   E      G   +    ++L+  LF E 
Sbjct: 515 VLAGMENAGIAVDLELLTEL-QSDFAHLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDEL 573

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRL 304
            +     T+T       + + L  +    F   + A R A    + ++ L+ ++ SDGR+
Sbjct: 574 EMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRI 633

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
             T                                +Q I       +++P+   I     
Sbjct: 634 HTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTE 662

Query: 361 -SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   +  +G  +L+ AD + IE R++A ++ ++  ++AF TGEDL+    +R+F 
Sbjct: 663 AGRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFG 722

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V   +VT + R   K M   L Y   A         +                       
Sbjct: 723 VPIEEVTAELRRRVKAMSYGLAYGLSAYGLSAQLKIS----------------------- 759

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                    E  K    Q  +R   + + L    EQ  ++G   
Sbjct: 760 ------------------------TEEAKDQMEQYFARFGGVRDYLMAVVEQARKDGYTS 795

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
               RR                 LP   S                + +  RE      L 
Sbjct: 796 TVFGRRRY---------------LPELDS----------------SNRQVREAAERAALN 824

Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
             I Q  + DI+   M+   KA         I+L VHDE++ E    +      L    M
Sbjct: 825 API-QGSAADIIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQLEALARDKM 883

Query: 652 TSNPSWAKGLPLKA 665
               ++   +PL+ 
Sbjct: 884 GG--AYPLDVPLEV 895


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%)

Query: 6   IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           ID ET    D+        GI     D       +         +D + D  +P      
Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
             K  LEN ++  +  +  ++  + K    ++I    W    +LA    N   +      
Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A      +    +++  +  K               + A     +Y   D  +T  +F 
Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535

Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R     +++    Q L++L+         +   G  +D      L+   D +   L  E 
Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281
           E +      +    ++L   LF + G+     T+T       +   K+    I V     
Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+      +TL  A +  GR+                               H    Q
Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +SDP+   I         +R   IA +G+ ++ AD + IE R++A  +G++
Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF    D++  T A       ++VT  +R   K +   L Y   A     +A    
Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +K   A               E     A +  ++ T   R K       S 
Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              + +   +A       G A    K   +  V     K++  L+L     LV+
Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 105/629 (16%), Positives = 187/629 (29%), Gaps = 147/629 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L +     V H+S      + A       I        +A     P   +   V  AL+ 
Sbjct: 381 LADETRPKVLHDSK---PAVLAFAAHGWSIEGITRDTQIAAYLARPDQRSYDLVDLALRY 437

Query: 119 SSQKME----EGKELIARFCK--GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             +++     +  +L        GE  + L  R +     A          D  ++R+  
Sbjct: 438 LHRELRVDTPDTGQLTFEGLGNDGEAEQNLMLRARATLDLAD-------AIDAELSRDGE 490

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +    ++  E  L  +  ++   G   D      L      E     Q       G   +
Sbjct: 491 QSSRLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAAQGAYE-AVGREFN 549

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL--- 289
               ++L+  LF+E GL      +T       + + L  Q        +   R       
Sbjct: 550 LGSPKQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLGHLLRHRDVAKLKT 609

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            ++ L+++++ DGR+  T                                +Q +      
Sbjct: 610 TVDGLLKSVSDDGRIHTT-------------------------------FNQTVAATGRL 638

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +++P+   I         +R   +  EG + L+ AD + IE R++A ++ +   + AF 
Sbjct: 639 SSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSADDVLIDAFN 698

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +G D +  T +  F V   +VT DQR   K M   L Y   A    +     G+      
Sbjct: 699 SGRDFHAATASSVFQVPVEEVTTDQRRKIKAMNYGLAYGLSAFGLSQ---QLGVTAEEAR 755

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L++                                               +    + + 
Sbjct: 756 GLMEI--------------------------------------------YFAGFGGVRDY 771

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           L +   +   +G       RR                 LP                L + 
Sbjct: 772 LQEVVARARHDGYTETVLGRRRY---------------LP---------------DLVSD 801

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637
            RQ  RE      L   I Q  + DI+   MM    A +D      ++L VHDE+V E  
Sbjct: 802 NRQ-RREMAERMALNAPI-QGSAADIIKVAMMRVDSAVHDAGLRSRMLLQVHDELVFEVA 859

Query: 638 DTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
             +      L    M    ++   +PL+ 
Sbjct: 860 PGERERLEELVRREMGE--AYPLSVPLEV 886


>gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
 gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
          Length = 886

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 114/663 (17%), Positives = 210/663 (31%), Gaps = 159/663 (23%)

Query: 32  LFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERT-VLKACFNL 86
           + AF + +          D + D    ++  EAL     T       F+R+ VL +   +
Sbjct: 344 ILAFSWGNKEAIYVSKNLDLLKD----RLFVEALSKPIKTY-----DFKRSKVLLSHLGI 394

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145
           ++P         LA+          +     L  Q  + +  E+  +  K         +
Sbjct: 395 ELPTAD--FDSRLAKYLLSTVEDNELSTIASLYGQTPLAKDVEVYGKGAK---------K 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCV 199
             P  +  ++      +  V     + ++L        L   E  L  +   +   G  V
Sbjct: 444 AVPEDQVLFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLAKMEITGIKV 503

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH--LEDLTET 257
           +      +     V    L QE+  +  G   +    ++L T LF E GL   +   T+T
Sbjct: 504 NRQTLKDMEVENQVTLDALTQEIYDMA-GQEFNINSPKQLGTILFEEMGLPTSMTKKTKT 562

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
                +   ++L P A  V                               L++   ++  
Sbjct: 563 GYSTAVDVLERLAPHAPIVAK----------------------------ILEYRQIAKLQ 594

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS- 371
                      L    + H    Q +T      + DP+   I         +R       
Sbjct: 595 STYVVGLQDFIL-DDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFTPEW 653

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++G++  + AF+ GED++  T  R FN+A P  VT + R 
Sbjct: 654 EDSVLLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRR 713

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y        +     G++     + + T      + +     +   E   
Sbjct: 714 NAKAVNFGVVYGISDYGLSQ---NLGISRKAAKNYIAT------YFERFPGIKDYMERVV 764

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
             A +  ++                                       + ++RR +P + 
Sbjct: 765 REAKDKGYV-------------------------------------ETLFKRRRTLPDI- 786

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                        + R+   R+    R+ +N+                   +Q  + DIL
Sbjct: 787 -------------NSRNFNIRNF-AERTAINSP------------------IQGSAADIL 814

Query: 611 AEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPL 663
              M+N  +A         ++L VHDEIV E P+ +      L    M S    A  +PL
Sbjct: 815 KIAMINLDQALEAGSFKTKMLLQVHDEIVLEVPNAELSAIKKLVKKTMESAIVLA--VPL 872

Query: 664 KAE 666
            A+
Sbjct: 873 LAD 875


>gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
 gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
          Length = 886

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/640 (16%), Positives = 206/640 (32%), Gaps = 161/640 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           L++ LE+  +     +       L     L++        ++LA        ++      
Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHR---LNLKAEGLDYDMLLASYLVNNENNSNDLGEV 423

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A       ++   E+  +  K                +    F         + +     
Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAV------------PDDNEFFEHLAAKVAVIEKLKTPL 471

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           LE L   EQ+  Y         +   +   G  V+ ++ + L     V+  +L+ ++   
Sbjct: 472 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282
             G   +    ++L   LF + GL     T+T     +   ++L   +P   ++ + R  
Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A +     +  L+E +  DGR+                               H    Q 
Sbjct: 591 A-KIQNTYVKGLLECIQPDGRI-------------------------------HTRYLQT 618

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395
           +T      + DP+   I         +R   + S  +G      D + +E RVLA ++G+
Sbjct: 619 LTATGRLSSVDPNLQNIPTRTNEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +AF++G D++  T  + F++  P +VT   R   K +   + Y         ++  
Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       ++                   E +P                        
Sbjct: 735 LGISRKQAKTFIEN----------------YFEQYP------------------------ 754

Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
               ++ N +  A ++  ENG A  I  +RR +P ++ K           + RS      
Sbjct: 755 ----QIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
              R+ +N+                   +Q  + DI+   M+N  K          +VL 
Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           VHDE++ + P  +      +   +M S       +PL A+
Sbjct: 838 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 875


>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
 gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
          Length = 875

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 194/583 (33%), Gaps = 76/583 (13%)

Query: 21  ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68
           +  Y E   ++LF+       +      V   D             +V +E  E+ ++  
Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESKEIKK 385

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + +N+   RT+L+    L I  +     + LA     P   +   E   L+S+ + +   
Sbjct: 386 ITYNAKNPRTILRK---LGIDFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               F K +    + +              E    D  +   ++K        EQ L   
Sbjct: 441 REDEFLKIKEVNIMPN---------LYKVLEEKIKDQDMEELLYK-------VEQPLTET 484

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G+ VD  +   L +    E      E+ S++     +    ++L   LF +  
Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEKFNINSPKQLGKILFEKLD 543

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +   P   ++   R    +     +  L  A++ DG++ 
Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
                   + TGR S      QN+P                             +   +R
Sbjct: 603 SNFNQT-VTATGRLSSTEPNLQNIPIKYE-------------------------MGREIR 636

Query: 366 SCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
              I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V   +V
Sbjct: 637 KVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEV 696

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R+  K +   + Y  G  +  +      +        +      E + +     + 
Sbjct: 697 TPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN----VKL 747

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
             EN  E A+E  ++ T   R ++  ++  S    +     +    +   G A    K  
Sbjct: 748 YLENIVEEAVEKGYVSTILNR-RRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806

Query: 545 DVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            V +    K+ N    ++L     L+     +    +    ++
Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELERIKALVKK 849


>gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10]
          Length = 986

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/497 (18%), Positives = 164/497 (32%), Gaps = 121/497 (24%)

Query: 170 EIFKRLEPLSSKE------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            + K+LE L  KE        L +    +   G CV     H   + + V+  +L+QE+ 
Sbjct: 572 RLTKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIY 631

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280
             T G   +    ++L   LF +  L     T+T   T   VL       P   ++ + R
Sbjct: 632 GET-GEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYR 690

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                 +    + L   +  DGR                                H   +
Sbjct: 691 QLTKLKSTYA-DGLAGYIREDGR-------------------------------IHGTFN 718

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q IT      +++P+   I     +   +R   +  EG   V AD + IE RVLA M+G+
Sbjct: 719 QTITATGRLSSTEPNLQNIPVRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGD 778

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++A+   ED++  T +  F+V   +VT  QR   K +   + Y   A     ++   
Sbjct: 779 ERLIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYGISAF---GLSEDL 835

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +        +  N   E + D + F   + E   E                        
Sbjct: 836 SITRKEALEYI--NRYFETYPDVKKFLDRLVEEGKEKGYV-------------------- 873

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                  + ++RR VP +              S ++ + R  G 
Sbjct: 874 ---------------------TTMFKRRRPVPEL--------------SSKNFMQRSFGE 898

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R  +N+  +         G   + I  A++R    +  +        IVL VHDE++ E
Sbjct: 899 -RVAMNSPIQ---------GTAADIIKIAMNR---VDNRLRREGLKSKIVLQVHDELLIE 945

Query: 636 TPDTDEFNA-SMLYHLM 651
               +     ++L   M
Sbjct: 946 AKKEELKRVQTILSEEM 962


>gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
 gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 119/709 (16%), Positives = 218/709 (30%), Gaps = 190/709 (26%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70
           D    G+   A    ++  +   D+                 +   LK+ +++  V  VA
Sbjct: 362 DTETDGLD--ALCAGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVA 419

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGK 127
           HN+ F+  VL       +P    +   +LA          +L  +  A  L        K
Sbjct: 420 HNAKFDLEVLTRY---GLPEAHPLYDTMLAHYLIDADQGHSLDEL--AGGLLRYDTIRYK 474

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------L 178
           +L       +    L     P      +L  +Y   D  VT  ++  L           L
Sbjct: 475 DLA-----PQESFALRTDVDP------KLLCDYASEDAYVTLRLYHALHKQLSPTEQRLL 523

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLE 237
           +  E  L Y+   +  RG  +D+       Q +     +L++E++S +  GL       +
Sbjct: 524 TEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPK 583

Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++   LF E   +     T+T    T +  L   + L P    +                
Sbjct: 584 QIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALIL--------------- 628

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                            +  A +         P    P   + H   +Q +T      +S
Sbjct: 629 ----------------DYREARKLLNTYIDPLPKMCYP-DGKLHTSYNQAVTATGRLSSS 671

Query: 353 DPDPLQI-----ISDCVRSCVIASE--------------------GKKLVVADLAGIEAR 387
           +P+   I     +   +R   +A                      G  L+ AD + +E R
Sbjct: 672 NPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADYSQVELR 731

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           V+A ++ +   + +F +G+D++  T A+ F VAP +VT   R+  K              
Sbjct: 732 VMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTAN----------- 780

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G+     +  +                                +G A E +K
Sbjct: 781 ---FGINYGITPYGLSQRLNIP-----------------------------VGEAAELIK 808

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +    + +      +++A     E G    A  RR                 L + R+
Sbjct: 809 EYF-ATFTHIQAF---MNEAIALATERGYTETAFGRR---------------RQLRNLRT 849

Query: 568 LVYRDVGNN-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--- 623
                 GN  R+ +N                    +Q  + DI+   M+   +       
Sbjct: 850 ARGAQRGNEERNAINAP------------------IQGTAADIIKIAMIRVEEELTKQQL 891

Query: 624 ---IVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAK-GLPLKAE 666
              +VL VHDE+V      + D   A ++   M    +W +  +PL  E
Sbjct: 892 RSYLVLQVHDELVLNVYLDELDRVTA-LVREAMEG--AWPECSVPLVVE 937


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 434 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 493

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 494 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 552

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 553 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 584

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 585 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 644

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 645 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 704

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 705 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 755

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 756 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 778

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 779 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 805

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 806 IKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 863

Query: 663 LKAE 666
           LK +
Sbjct: 864 LKVD 867


>gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 928

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 99/637 (15%), Positives = 168/637 (26%), Gaps = 139/637 (21%)

Query: 34  AFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           A           D    DP   + L + L +       H        L A       +  
Sbjct: 382 AISVPSGDAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAH---GWELGG 438

Query: 93  WICTLVLARSNGLPS----ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
            +    LA     P      L  +  + L    ++   G +L       +          
Sbjct: 439 VVSDTALAAYLVQPGQRRFDLADLCRKYLGRELEEDSSGDQLTLDLGGEDGAGSGRQHLL 498

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                A         G ++   +       L   E  L  +   +   G   D      L
Sbjct: 499 AVRASA----TRDLAGVLSAELDKRGGTHLLHEVELPLVDVLARLERAGIAADRPYLEEL 554

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
                       +    +  G   +    ++L+  LF + GL      +T       +  
Sbjct: 555 QGEFAAAGRVAVERAHEI-VGREFNLGSPKQLQQVLFEDLGLPRTKKIKTGYTTDADALA 613

Query: 268 KLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            L  Q        +   R        +  L++ +  DGR+  T                 
Sbjct: 614 WLASQTDNELPAVLLHHRDQTKLRTTVEGLIKTVADDGRIHTT----------------- 656

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVV 378
                          +Q +       ++DP+   I         +R   +  EG + L+ 
Sbjct: 657 --------------FNQTVAATGRLSSTDPNLQNIPVRTDVGRRIRRAFVVGEGYEELLT 702

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++GEQ  + AF +G D +    A+ F+V   QV  + R+  K M   
Sbjct: 703 ADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSYG 762

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y   A    +     G+                                         
Sbjct: 763 LAYGLSAYGLSQ---QLGITPEES------------------------------------ 783

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                   K+      +    + + L+   E+    G       RR              
Sbjct: 784 --------KRLMEDYFAEFGGVRDYLNAMVEEARRVGYTETILGRRRY------------ 823

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
              LP                L +  RQ  RE      L   I Q  + DI+   M+   
Sbjct: 824 ---LP---------------DLTSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLRVD 863

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            A         ++L VHDE+V E    +      +  
Sbjct: 864 AALTEGGLTSRVLLQVHDELVVEVAPGERAEVENIVA 900


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 105/596 (17%), Positives = 205/596 (34%), Gaps = 102/596 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-QVLK 58
             D ET S +D+          +  ++ F+F ++++        H        +  +  K
Sbjct: 331 SFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAK 380

Query: 59  EALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            A+   +    V  N  ++  ++K   N DI +  +  T++L+        +    +  K
Sbjct: 381 NAIIQLNRYKLVLQNFKYDYEIIKN--NFDIELRLYADTMILSWLLNTNEKVGLDYQIDK 438

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--- 174
               KM    +++    KGE    +                EY   D  +T  +FK+   
Sbjct: 439 YFDHKMISFTDVVK---KGENFSNV----------DIERACEYAAEDALMTLRLFKKQLE 485

Query: 175 ----------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                     L      E +  Y+   +   G  VDV L     ++ +    +L  ++  
Sbjct: 486 IFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQ 545

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
            T G+  +    ++L   LF   GL     T+T       VL+           +   R 
Sbjct: 546 -TSGVEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYR- 603

Query: 282 RASRSAVLKLNTLVE--AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            A +     +  L+E  + + D R+  +    G                           
Sbjct: 604 EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTG--------------------------- 636

Query: 340 DQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
               T      + +P+   I +       +R   I  +G KLV  D + IE R+LA  + 
Sbjct: 637 ----TATGRLSSKNPNLQNIPTKSDSTIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQ 692

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AFE   D++  T  + F     +  K++R I K +   L Y  G+   +K+  T
Sbjct: 693 DKALVEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGS---KKLGET 746

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        + +      + +A    +   ++  + A  + ++ T   R  K     +
Sbjct: 747 LGIPSKEAKQYIDS------YFEAFKSVKDYLKSIEDFAHINGYVKTLLNR--KRLFDFN 798

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           S  + +     +    T+  G A    K   + +    KD  N+ L+L     LV+
Sbjct: 799 SANAMMKAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVF 854



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNA 644
           +  Y  +    + Q  + D++   M+N            ++L +HDE+V E    DEF  
Sbjct: 805 KAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVFEV--KDEFVE 862

Query: 645 SM---LYHLMT 652
            +   + ++M 
Sbjct: 863 EITFSIKNIME 873


>gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 931

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 103/523 (19%), Positives = 169/523 (32%), Gaps = 130/523 (24%)

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             D     E       +   E  L  +   +  RG  ++ A        V  E  +L QE
Sbjct: 510 AQDAAARLEGVGLSALMEELEMPLIPVLADMELRGIRINRAEFSGFLAEVQKELDRLTQE 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
           + ++  G   + R  ++L   LF   GL     T+    +T Q VL       P    + 
Sbjct: 570 VYAVAGGQ-FNIRSSQQLGELLFGTLGLKAGSKTKGGQASTSQAVLEKLAGKHPVIDTIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R +  +     L  L      + R+                               H 
Sbjct: 629 EYR-KLEKLRSTYLEPLPRLAQENDRI-------------------------------HT 656

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +Q+ T      +S P+   I         +R C  A+ G KLV AD + IE RVLA +
Sbjct: 657 TFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNKLVAADYSQIELRVLAHV 716

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   +++F   ED++  T    ++V  A VT DQR   K +   L Y  G    QK+A
Sbjct: 717 SADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTINFGLIYGMGP---QKLA 773

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               + LN                                               + +  
Sbjct: 774 QELKVTLNEAKE-----------------------------------------FIERYFS 792

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           K S + E ++ + Q+  +        +A +RR +P ++                      
Sbjct: 793 KLSHLKEFYDNVEQSARE--HGFVTTLAGRRRLLPEIH---------------------- 828

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN------ATKAGYDIVL 626
                S  N    Q  R+          +VQ  + DI+   M+         +    ++L
Sbjct: 829 -----SDNNQLRSQARRQ------AINTVVQGSAADIIKIAMLKAAADETLQQLNAALIL 877

Query: 627 TVHDEIVCETP-DTDEFNASMLYHLMTSNPS--WAKGLPLKAE 666
            VHDE++ E P D  E  A  L  +M+S      A  +PL  +
Sbjct: 878 QVHDELLLEAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVD 920


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 106/676 (15%), Positives = 200/676 (29%), Gaps = 169/676 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL----KEALENTD 65
           D    G+    +   ++ F+F  D         +H        +           +    
Sbjct: 344 DTETTGLDPSKDH--LVGFSFSTDGKTGYYVPMMHSYLGVGDQVSTEAAAKAIRLIFEHR 401

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
           V    HN  F+   +     +D  +  +  T+VLA       +L     +  L   +M  
Sbjct: 402 VI--GHNIKFDLHFVTRFLGVD-RLSIYADTMVLAWLTDSSRSLAMDNLSQSLLHHEMIH 458

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------ 179
            K+ +              + +     A     +Y   D  +T  +++ L+         
Sbjct: 459 FKDTVK-------------KGENFASVAIEDACKYAGEDAYITYRLYEVLKEQLLLKGGQ 505

Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E         +   G  VD A+     + V  E   L +++ S   G V +
Sbjct: 506 EALDEAFDVEFPFTLTLLGMEKEGIAVDTAVLELFKKEVAHEIATLTEQIHS-ACGTVFN 564

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF   GL     T+T     ++VL   +   P    +   R    +    
Sbjct: 565 LNSPKQLGVILFETLGLPHGKKTKTGYSTDEQVLEGLQFEHPMIPMLLQYR-EYHKLYST 623

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L+                               QN P  SR +    Q  T     
Sbjct: 624 YIEPLIALA----------------------------QNDP-SSRIYTSFVQTGTATGRL 654

Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            + +P+   I     +   +R   +A  GKKL+  D + IE R+LA  + +   + AF  
Sbjct: 655 SSKNPNLQNIPVKTALGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNE 714

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D+++ T    F    A+    +R I K +   L Y  G    +K++ T G+       
Sbjct: 715 GHDIHMQTAIALFG---AEDASRKRNIAKTVNFGLLYGMGQ---KKLSDTLGITTKEAKE 768

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                    + + + +    V   +N +
Sbjct: 769 -----------------------------------------IIERYFETFPSVKGYFNGI 787

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +  ++ I   + ++ R+R                          Y D G+    L    
Sbjct: 788 VEQAKE-IGYVETLLHRRR--------------------------YFDFGSATPML---- 816

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILA------EGMMNATKAGYDIVLTVHDEIVCETP- 637
                +  Y  +    + Q  + D++       + M+        ++L +HDE++ E   
Sbjct: 817 -----KAAYERESVNTVFQGSASDLIKLSMNKIDTMIRTEGLRARMLLQIHDELIFEVDA 871

Query: 638 DTDEFNASMLYHLMTS 653
           D  E  A      M  
Sbjct: 872 DVAEEYAVRFVDAMER 887


>gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
 gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
          Length = 932

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 98/686 (14%), Positives = 183/686 (26%), Gaps = 170/686 (24%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------------DPVMP- 54
              +D    G+ +      ++  +   +          H                  MP 
Sbjct: 346 YVAVDTETTGLDE--LTAELVGVSLSVEPGQACYIPLTHKASRSDDLFGSDDLAPGQMPF 403

Query: 55  ----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
               Q+L   LE+  +  +  N  ++  +      + +        +  A   GL     
Sbjct: 404 EEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ-LGITVAPIDDTMLMSYAMHAGL-HGHG 461

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               + +         K L+       T + +                 Y   D  VT  
Sbjct: 462 MDTLSERYLGHTPLPIKPLLGSGKSAVTFDKV----------PMEDAVPYAAEDADVTLR 511

Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           ++K  +P   +          E+ L  +   +   G  VD      ++     +   L+ 
Sbjct: 512 LWKLFKPQLHRAEVTKVYETLERPLVPVLAQMERAGILVDRDTLSRMSNAFAQKMAGLEA 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           ++  L  G   +     +L   LF + GL      +    +T   VL         A +V
Sbjct: 572 DIHELA-GETFNVGSPAQLGEILFGKMGLDGGKKGKTGKYSTGADVLEDLATEHDLARRV 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + R                                 S+                  R H
Sbjct: 631 LDWRQL-------------------------------SKLKSTYTDALQDHVNANTGRVH 659

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                         ++DP+   I         +R   +A EGK LV  D + IE R+LA 
Sbjct: 660 TCYSIAGAATGRLASTDPNLQNIPIRSEEGRRIREAFVAPEGKVLVALDYSQIELRILAH 719

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A      +AFE G+D++  T +  F+V   Q+T + R   K +   + Y        + 
Sbjct: 720 IAQIDALKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYGISGFGLAR- 778

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                             +      +A+ F     E  P                     
Sbjct: 779 ------------------NLRIPRAEAQGFIDRYFERFP--------------------- 799

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                             +T  +     A++   V  ++              GR +   
Sbjct: 800 ----------------GIRTYMDDTKAFAKEHGFVQTLF--------------GRKINTP 829

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----IVLT 627
           ++G          R                +Q  + D++   M+   +A  D    ++L 
Sbjct: 830 NIGAKGPQAGFAAR----------AAINAPIQGTAADVIRRAMIRMPEAIADLPAKMLLQ 879

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMT 652
           VHDE++ E     E         +M 
Sbjct: 880 VHDELLFEVEKGAEDALIAAAREVME 905


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 97/570 (17%), Positives = 179/570 (31%), Gaps = 107/570 (18%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70
           D    G+   A    ++  +   D+                 +   LK+ +++  V  VA
Sbjct: 362 DTETDGLD--ALCAGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVA 419

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGK 127
           HN+ F+  VL       +P    +   +LA          +L  +  A  L        K
Sbjct: 420 HNAKFDLEVLTRY---GLPEAHPLYDTMLAHYLIDADQGHSLDEL--AGGLLRYDTIRYK 474

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------L 178
           +L       +    L     P      +L  +Y   D  VT  ++  L           L
Sbjct: 475 DLA-----PQESFALRTDVDP------KLLCDYASEDAYVTLRLYHALHKQLSPTEQRLL 523

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLE 237
           +  E  L Y+   +  RG  +D+       Q +     +L++E++S +  GL       +
Sbjct: 524 TEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPK 583

Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++   LF E   +     T+T    T +  L   + L P    +                
Sbjct: 584 QIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALIL--------------- 628

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                            +  A +         P    P   + H   +Q +T      +S
Sbjct: 629 ----------------DYREARKLLNTYIDPLPKMCYP-DGKLHTSYNQAVTATGRLSSS 671

Query: 353 DPDPLQI-----ISDCVRSCVIASE--------------------GKKLVVADLAGIEAR 387
           +P+   I     +   +R   +A                      G  L+ AD + +E R
Sbjct: 672 NPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADYSQVELR 731

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           V+A ++ +   + +F +G+D++  T A+ F VAP +VT   R+  K     + Y      
Sbjct: 732 VMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINYGITPYG 791

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +      + +   A L+K      E+       +         A E  +  TA  R +
Sbjct: 792 LSQ---RLNIPVGEAAELIK------EYFATFTHIQAFMNKAIALATERGYTETAFGR-R 841

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           +  R   +          +        G A
Sbjct: 842 RQLRNLRTARGAQRGNEERNAINAPIQGTA 871


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 108/646 (16%), Positives = 189/646 (29%), Gaps = 143/646 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
            V   A           +         + L E L +       H++      L A     
Sbjct: 358 EVDALAVATASGAAVYVEPAELGEADERALAEWLADPHRPKAIHDAKGPMLALAA---RG 414

Query: 88  IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +        LA    LP           L+   +++ E  E   +           D 
Sbjct: 415 MTLAGVTSDTALAAYLALPGQRTFDLGDLVLRYLHKELREHAEPGGQL---TIDGIADDD 471

Query: 146 NKPNHREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                    R   E     D  + R    RL  L   E  L  +   +   G  VDV   
Sbjct: 472 AARELAVRARAVLELAEALDRDLERRGAARL--LHEVELPLTGVLAAMERAGIAVDVDHF 529

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
             L+  +  +    +Q+  +   G   +    ++++  LF E GL     T+T       
Sbjct: 530 IQLSASLGGQAKDTEQQAHA-AVGHEFNLGSPKQVQQVLFEELGLPKTKRTKTGYTTDSE 588

Query: 265 SNKKL-----TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           +   L      P    +   R  A   ++  +++L+     DGR+               
Sbjct: 589 ALNSLRAKSDHPVLEHILRWREVAKLKSI--VDSLIPMAAEDGRI--------------- 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374
                           H   +Q++       ++DP+   I         +R   +  EG 
Sbjct: 632 ----------------HTTFNQMVAATGRLSSTDPNLQNIPIRTAEGRQIREGFVVGEGY 675

Query: 375 K-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           + L+ AD + IE R++A ++G++  ++AF +G D +  T +R F + P Q+  + RA  K
Sbjct: 676 ECLLTADYSQIELRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIK 735

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L Y         +AS  G+  +                                 
Sbjct: 736 AMNYGLAYGLSPF---GLASQLGITPDEA------------------------------- 761

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                        +    +   +   + + L     +  ++G       RR         
Sbjct: 762 -------------RVLMEEYFQQFGGVRDYLQGVVRRARQDGYTETILGRRRY------- 801

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                   LP                L +  RQ  RE      L   I Q  + DI+   
Sbjct: 802 --------LP---------------DLTSDNRQ-RREMAERMALNAPI-QGSAADIIKVA 836

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652
            +   +A         ++L VHDE+V E    +      L    MT
Sbjct: 837 SLRVDRALRERGLASRMLLQVHDELVFEVAPGELEELKELVREQMT 882


>gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1]
 gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1]
          Length = 986

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 94/497 (18%), Positives = 164/497 (32%), Gaps = 121/497 (24%)

Query: 170 EIFKRLEPLSSKE------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            + K+LE L  KE        L +    +   G CV     H   + + V+  +L+QE+ 
Sbjct: 572 RLMKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIY 631

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280
             T G   +    ++L   LF +  L     T+T   T   VL       P   ++ + R
Sbjct: 632 GET-GEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYR 690

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                 +    + L   +  DGR                                H   +
Sbjct: 691 QLTKLKSTYA-DGLAGYIREDGR-------------------------------IHGTFN 718

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q IT      +++P+   I     +   +R   +  EG   V AD + IE RVLA M+G+
Sbjct: 719 QTITATGRLSSTEPNLQNIPVRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGD 778

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++A+   ED++  T +  F+V   +VT  QR   K +   + Y   A     ++   
Sbjct: 779 ERLIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYGISAF---GLSEDL 835

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +        +  N   E + D + F   + E   E                        
Sbjct: 836 SITRKEALEYI--NRYFETYPDVKKFLDRLVEEGKEKGYV-------------------- 873

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                  + ++RR VP +              S ++ + R  G 
Sbjct: 874 ---------------------TTMFKRRRPVPEL--------------SSKNFMQRSFGE 898

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R  +N+  +         G   + I  A++R    +  +        IVL VHDE++ E
Sbjct: 899 -RVAMNSPIQ---------GTAADIIKIAMNR---VDNRLRREGLKSKIVLQVHDELLIE 945

Query: 636 TPDTDEFNA-SMLYHLM 651
               +     ++L   M
Sbjct: 946 AKKEELKRVQTILSEEM 962


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 91/525 (17%), Positives = 161/525 (30%), Gaps = 135/525 (25%)

Query: 165 VTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              T ++   L P   +         E+ L ++   +  RG  +D A    L+  +    
Sbjct: 434 ALATAQLLTALRPQLDEKRAQLYKDVERPLAHVLARMEVRGVRLDSAYLRGLSDSLGARA 493

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSSNKKLT 270
            +LD  ++ L  G   S    ++L++ L+ E GL     T+ T +R      L   +   
Sbjct: 494 QELDARIQELA-GHPFSVNSRDQLESVLYDELGLASGKKTKLTGKRSTAVSALEPLRDEH 552

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +   R                                 ++         P    P
Sbjct: 553 PIIPLLLEYREL-------------------------------TKLKGTYLDPLPNLVNP 581

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
              R H    Q         + +P+   I         +R   IA +G  L+ AD + IE
Sbjct: 582 LTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSETGREIRKGFIADDGFCLISADYSQIE 641

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A +    +AF  G D++  T A+   V    VT +QR   K +   + Y   A
Sbjct: 642 LRLLAHIADDALMQEAFVGGADIHRRTAAQVLGVMEDLVTPNQRRAAKTVNFGVLYGMSA 701

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               ++++  G++                + +A  F       +P               
Sbjct: 702 ---HRLSNDLGIS----------------FAEASRFIERYFATYPR-------------- 728

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                R+                            R+   V  +Y ++       ++P  
Sbjct: 729 ----IREYIDATLAF-------------------GREHGYVETMYGRR------RLVPEL 759

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG 621
           RS             N T R+      Y        +Q  + DI+   M+         G
Sbjct: 760 RS------------ANRTMREAGERVAY-----NMPIQGTAADIIKIAMVELDEQLSALG 802

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
             ++L VHDE++ E P       + L   +         +PL+ E
Sbjct: 803 ARLLLQVHDELLIEAPSDRADEVAALTRRVMEGVV-TLKVPLRVE 846


>gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 884

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 103/672 (15%), Positives = 206/672 (30%), Gaps = 161/672 (23%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +    ++   +  ++   L +A     +        F+R+ 
Sbjct: 330 FEILGDNYHVENIIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSK 384

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCK-- 135
           VL +   +D+P         LA+          +    +L     ++  + +  +  K  
Sbjct: 385 VLLSHLGIDLPAP--AFDSRLAKYLLSTVDDNELSTIARLYTEYVLDSDEAVYGKGAKRA 442

Query: 136 -GETHECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
             +    L    +     NH E           D     +    L      EQ L  +  
Sbjct: 443 VPDKAVLLSHLARKIVVLNHSEK-------AMLDKLTEHQQASLLF---DMEQPLANVLA 492

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  V       + +       +L QE+  L  G+  +    ++L   LF +  L 
Sbjct: 493 KMEIAGISVKKETLQDMEKANQAVIDELTQEIYDLA-GMEFNINSPKQLGELLFDKMQLP 551

Query: 251 L--EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
                 T+T     +   ++L P +  V                               L
Sbjct: 552 TSYTKKTKTGYSTAVDVLERLAPISPIVSK----------------------------IL 583

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
           ++   ++             L +  + H    Q +T      + DP+   I         
Sbjct: 584 EYRQIAKLQSTYIVGLQDFIL-KDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRL 642

Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP- 421
           +R   +     + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +   
Sbjct: 643 IRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKA 702

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             VT + R   K +   + Y         +A+  G+        ++T      + +    
Sbjct: 703 EDVTPNDRRNAKAVNFGIVYGISDY---GLANNLGIPRKVAKQYIET------YFERYPG 753

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            +   E     A +  ++ T                                     +  
Sbjct: 754 IKDYMERVVRDAKDKGYVET-------------------------------------LFH 776

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           +RR++P +              + R+   R     R+ +N+                   
Sbjct: 777 RRRELPDI--------------NARNFNVRQF-AERTAINSP------------------ 803

Query: 602 VQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654
           +Q  + DIL   M+N  KA  D      ++L VHDEI+ E P  + E    ++   M S 
Sbjct: 804 IQGSAADILKIAMINLDKALVDGRFKTKMLLQVHDEIILEVPKDELEAIEKLVKETMESA 863

Query: 655 PSWAKGLPLKAE 666
                 +PL A+
Sbjct: 864 IE--LSVPLVAD 873


>gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
 gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
          Length = 877

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLSQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
 gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
          Length = 864

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 96/571 (16%), Positives = 173/571 (30%), Gaps = 139/571 (24%)

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
           G    L  +     L++  +  G+         + ++    +      E   L  +    
Sbjct: 380 GRGITLNGIAHDTALAAYLLRPGQRTYEL---PDVYQRHLRKTLEASSEQLSLLDDTGGI 436

Query: 164 D-----VTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           D     + +T E+ K L+ +         E  L  +   +   G  V+V    +  ++  
Sbjct: 437 DSAVAIMELTVELTKALQEIDSYQLYAELEIPLVSILAKMEATGIAVNVDTLESQQEVFA 496

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
                 ++    L      +    ++L+T LF    L     T+T         ++L   
Sbjct: 497 NHVAAEEKAARELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTGYSTAAKEIEQLAIN 556

Query: 273 AIQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
               F + + A R        L  L++ +  DGR+                         
Sbjct: 557 HPHPFLDHLLAHREYQKLKTTLEGLIKTVQPDGRI------------------------- 591

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAG 383
                 H   +Q +       +++P+   I         +RS  I  EG   L+ AD + 
Sbjct: 592 ------HTTFNQTVASTGRLSSTEPNLQNIPVRTESGRTIRSAFIVGEGYETLLTADYSQ 645

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RV+A ++ +   ++A++ GEDL+    +R F+V   +VT + R   K M   L Y  
Sbjct: 646 IEMRVMAHLSQDPGLIEAYKEGEDLHNYVGSRVFDVPVDKVTSELRRRVKAMSYGLVYGL 705

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A    +  S                                                  
Sbjct: 706 SAFGLSQQLSI-----------------------------------------------PA 718

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILML 562
              KK       R   +   L    EQ  ++G  A +  +RR +P              L
Sbjct: 719 GEAKKTMDAYFDRFGGVKKYLADVVEQARKDGYTATVFGRRRYLP-------------EL 765

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
            S   L   +    R+ LN                    +Q  + DI+   M+   +A  
Sbjct: 766 ISDNRLARENA--ERAALNAP------------------IQGTAADIIKVAMIRVDQALE 805

Query: 623 ----DIVLTVHDEIVCETPDTDEFNASMLYH 649
                ++L VHDE+V E    +      +  
Sbjct: 806 GFKSRVLLQVHDELVVEVAPGELNKVQEIVE 836


>gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7]
 gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
          Length = 860

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 88/485 (18%), Positives = 154/485 (31%), Gaps = 74/485 (15%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
            P          V+   L+  LE++    + HN+ ++  VL    N  + +       +L
Sbjct: 324 GPDHAPQLPKQEVL-DRLRPWLEDSKAHKLLHNAKYDTHVL---MNEGVALAGVAEDTML 379

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   + K V    +L+ + +          C     +  +D               
Sbjct: 380 QAYVL--ESHKRV-NMQELAERWLGRIGTTYEDLCGKGAKQIGFD------EIDVDKASH 430

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHTLNQ 209
           Y   D   T ++ + L P    +  L  + Q           I   G  +D  L    + 
Sbjct: 431 YACEDADFTLQLHQVLRPKVLADPGLENIYQLEVQASATLAIIERNGVAIDGKLLAAQSH 490

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSS 265
            +  +  + + +   L  G   +    ++L   LF    L +         +T + VL+ 
Sbjct: 491 ELGQKLLEFEAKAYELA-GQPFNLNSPKQLGEILFQRMQLPIVRKTPSGAPSTDEDVLTK 549

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                P    +   R                               G ++         P
Sbjct: 550 LAHDYPLPALLLEYR-------------------------------GLAKLKSTYTDKLP 578

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
               PR  R H    Q         +SDP+   I         VR+  +AS G ++V AD
Sbjct: 579 KMINPRTGRVHTRYAQAAVITGRLASSDPNLQNIPVRTPEGRRVRAAFVASGG-QIVSAD 637

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RV+A ++ ++   +AFE G+D++  T A  F  A A+V+ +QR   K +   L 
Sbjct: 638 YSQIELRVMAHVSDDENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAINFGLI 697

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y  G      +AS  G+  +     +    A               E     A E  ++ 
Sbjct: 698 YGMGEF---GLASNLGITRDAARAYIDRYFARYP------GVAAYMEQTKRMANELGYVE 748

Query: 501 TACER 505
           T   R
Sbjct: 749 TVFGR 753


>gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026]
          Length = 886

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 103/640 (16%), Positives = 206/640 (32%), Gaps = 161/640 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           L + LE+  +     +       L     LD+        ++LA        ++      
Sbjct: 367 LHKMLEDKTIKKNVFDIKRTYVGLHR---LDLKAEGLDYDMLLASYLVNNENNSNDLGEV 423

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A       ++   E+  +  K                     F         + +   + 
Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAVPNDN------------EFFEHLAAKVAVIEKLKTQL 471

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           LE L   EQ+  Y         +   +   G  V+ ++ + L     V+  +L+ ++   
Sbjct: 472 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282
             G   +    ++L   LF + GL     T+T     +   ++L   +P   ++ + R  
Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A +     +  L++ +  DGR+                               H    Q 
Sbjct: 591 A-KIQNTYVKGLLDCIQPDGRI-------------------------------HTRYLQT 618

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395
           +T      + DP+   I         +R   + S  +G      D + +E RVLA ++G+
Sbjct: 619 LTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +AF++G D++  T  + F++  P +VT   R   K +   + Y         ++  
Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       ++                   E +P                        
Sbjct: 735 LGISRKQAKTFIEN----------------YFEQYP------------------------ 754

Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
               ++ N + +A ++  ENG A  I  +RR +P ++ K           + RS      
Sbjct: 755 ----QIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
              R+ +N+                   +Q  + DI+   M+N  K          +VL 
Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           VHDE++ + P  +      +   +M S       +PL A+
Sbjct: 838 VHDELIFDVPKDELNTIKKIVPEVMQSAVK--LDVPLIAD 875


>gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 886

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 103/640 (16%), Positives = 206/640 (32%), Gaps = 161/640 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           L++ LE+  +     +       L     L++        ++LA        ++      
Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHR---LNLKAEGLDYDMLLASYLVNNENNSNDLGEV 423

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A       ++   E+  +  K                +    F         + +     
Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAV------------PDDNEFFEHLAAKVAVIEKLKTPL 471

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           LE L   EQ+  Y         +   +   G  V+ ++ + L     V+  +L+ ++   
Sbjct: 472 LEKLKDHEQDDLYETIEIPAAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282
             G   +    ++L   LF + GL     T+T     +   ++L   +P   ++ + R  
Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A +     +  L+E +  DGR+                               H    Q 
Sbjct: 591 A-KIQNTYVKGLLECIQPDGRI-------------------------------HTRYLQT 618

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395
           +T      + DP+   I         +R   + S  +G      D + +E RVLA ++G+
Sbjct: 619 LTATGRLSSVDPNLQNIPTRTNEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +AF++G D++  T  + F++  P +VT   R   K +   + Y         ++  
Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       ++                   E +P                        
Sbjct: 735 LGISRKQAKTFIEN----------------YFEQYP------------------------ 754

Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
               ++ N +  A ++  ENG A  I  +RR +P ++ K           + RS      
Sbjct: 755 ----QIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
              R+ +N+                   +Q  + DI+   M+N  K          +VL 
Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           VHDE++ + P  +      +   +M S       +PL A+
Sbjct: 838 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 875


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
          Length = 878

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 173/514 (33%), Gaps = 135/514 (26%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++L+ L   E  L  +   +   G  V+      +    +V   +L +E+  L  G   +
Sbjct: 469 QQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELA-GQEFN 527

Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L T LF E GL LE    T+T       VL     + P   ++   R      +
Sbjct: 528 INSPKQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQS 587

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L +A+  DG                               + H    Q +T   
Sbjct: 588 TY-VVGLQDAILEDG-------------------------------KIHTRYVQDLTQTG 615

Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              ++DP+   I         +R   + S E   L+ +D + IE RVLA ++ ++  ++A
Sbjct: 616 RLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEA 675

Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F+ G D++ +T  R F +     VT + R   K +   + Y         +++  G+   
Sbjct: 676 FQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLSNNLGITRK 732

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T                                               R   +
Sbjct: 733 EAKAYIDTYF--------------------------------------------ERFPGI 748

Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            N +     +  + G    I ++RR++P +              + R+   R+    R+ 
Sbjct: 749 KNYMETIVREARDKGYVETIYKRRRELPDI--------------NSRNFNVRNF-AERTA 793

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +N+                   +Q  + DIL   M+N  KA         ++L VHDEIV
Sbjct: 794 INSP------------------IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P  + E   +M+   M S  S    +PL A+
Sbjct: 836 LEVPVAELETVKAMVKETMESAIS--LSVPLIAD 867


>gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023]
          Length = 552

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 90/627 (14%), Positives = 183/627 (29%), Gaps = 149/627 (23%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121
           ++ T V +++      +     +   I      ++LA     PS         A++    
Sbjct: 40  SEETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHDYT 96

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177
           ++E  + +  +  K         R+ P                  + + +   LE     
Sbjct: 97  EVETDEAIYGKGAK---------RSTPEEDIVAAHLARKAVAIAELEKRLVDDLEKNEQL 147

Query: 178 --LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
             +   E  L ++   +  +G  VD      +   +      L++ + SL  G   +   
Sbjct: 148 ALMEDLELPLTFVLAQMEMQGVSVDTQRLGNMKVELAGRLKTLEESIHSLA-GEEFNINS 206

Query: 236 LEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF +  L     T+T   T   VL S         ++   R            
Sbjct: 207 PKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL---------- 256

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                    G+++ T        T +               + H   +Q +T      + 
Sbjct: 257 ---------GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSV 295

Query: 353 DPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           DP+   I         +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   
Sbjct: 296 DPNLQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDY 355

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T    F+V   +V    R   K +   + Y        +     G+        +
Sbjct: 356 DIHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFI 412

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                           +   ++    A E  ++ T   R     R+    +         
Sbjct: 413 DRYFVSYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------- 454

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                                                  R+   R     R+ +NT    
Sbjct: 455 ---------------------------------------RNFNVRGF-AERTAMNTP--- 471

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD 640
                          +Q  + DI+ + M      + +      ++L VHDE++ E P+ +
Sbjct: 472 ---------------IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAE 516

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAE 666
                 +   +M +       +PLK +
Sbjct: 517 IAKLEEIVPDVMENAVE--LSVPLKVD 541


>gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS]
 gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS]
          Length = 929

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 111/684 (16%), Positives = 201/684 (29%), Gaps = 158/684 (23%)

Query: 16  LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNS 73
           L   G    Y  D   +       D      D    DP     L   L +       H +
Sbjct: 357 LAVVGTHLAYDADATALAIVAADGDG--RYIDTTSLDPDDEAALASWLADPGPPKALHEA 414

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
                 +         +        LA     P        +  L    +   +  +   
Sbjct: 415 KL---AMHDLAGRGWKLAGVTSDTALAAYLVRPGQ-----RSFSLDDLSLRYLRRELRAD 466

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWY 187
              +    L D +     +A +         + +   + + L  + S       E  +  
Sbjct: 467 NPAQQQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQR 526

Query: 188 LDQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           +   +   G  VD+     L ++  D+ R   +     +  G   +    ++L+  LF E
Sbjct: 527 VLAEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVI--GKQINLGSPKQLQAVLFDE 584

Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGR 303
             +     T+T       + + L  +    F   + A R A    + ++ L+ ++ SDGR
Sbjct: 585 LAMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGR 644

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +  T                                +Q I       +++P+   I    
Sbjct: 645 IHTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRT 673

Query: 361 --SDCVRSCVIA---SEG-------KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                +R   +      G        +L+ AD + IE R++A ++ +   ++AF TGEDL
Sbjct: 674 EAGRRIRDAFVVESRPPGSGGGAVFTELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDL 733

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    +R+F+V   +VT D R   K M   L Y   A     +A+   ++          
Sbjct: 734 HSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAYGLSAY---GLAAQLKISTEEA------ 784

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                 K    Q  +R   + + L    
Sbjct: 785 --------------------------------------KVQMDQYFARFGGIRDYLRDVV 806

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           +Q  ++G       RR                 LP   S                     
Sbjct: 807 DQARKDGYTSTVFGRRRY---------------LPELDSSNRN----------------V 835

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642
           RE      L   I Q  + DI+   M++  +A         ++L VHDE++ E  D +  
Sbjct: 836 REAAERAALNAPI-QGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERD 894

Query: 643 NASMLYH-LMTSNPSWAKGLPLKA 665
               L    M S  ++A  +PL+ 
Sbjct: 895 TLEKLVRDKMGS--AYALDVPLEV 916


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 173/514 (33%), Gaps = 135/514 (26%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++L+ L   E  L  +   +   G  V+      +    +V   +L +E+  L  G   +
Sbjct: 469 QQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELA-GQEFN 527

Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L T LF E GL LE    T+T       VL     + P   ++   R      +
Sbjct: 528 INSPKQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQS 587

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L +A+  DG                               + H    Q +T   
Sbjct: 588 TY-VVGLQDAILEDG-------------------------------KIHTRYVQDLTQTG 615

Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              ++DP+   I         +R   + S E   L+ +D + IE RVLA ++ ++  ++A
Sbjct: 616 RLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEA 675

Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F+ G D++ +T  R F +     VT + R   K +   + Y         +++  G+   
Sbjct: 676 FQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLSNNLGITRK 732

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T                                               R   +
Sbjct: 733 EAKAYIDTYF--------------------------------------------ERFPGI 748

Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            N +     +  + G    I ++RR++P +              + R+   R+    R+ 
Sbjct: 749 KNYMETIVREARDKGYVETIYKRRRELPDI--------------NSRNFNVRNF-AERTA 793

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +N+                   +Q  + DIL   M+N  KA         ++L VHDEIV
Sbjct: 794 INSP------------------IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P  + E   +M+   M S  S    +PL A+
Sbjct: 836 LEVPVAELETVKAMVKETMESAIS--LSVPLIAD 867


>gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515]
 gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515]
          Length = 880

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 123/686 (17%), Positives = 212/686 (30%), Gaps = 160/686 (23%)

Query: 9   ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           E  S  D       G   + ED    L    + +      D ++      +L+EAL    
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSDVSLLQEALFKKA 366

Query: 66  VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123
           ++       F+R+ VL   FN+D+P         LA+     +    V    +L +   +
Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EP 177
           +    +  +  K         R  P          +  K  V     I ++L      E 
Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +  RG  V     + +          L QE+  L  G   +    +
Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSPK 534

Query: 238 KLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           +L   LF   GL +E    T+T     +   ++L P +  V                   
Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK----------------- 577

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                       L++   ++             L    + H    Q +T      +SDP+
Sbjct: 578 -----------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPN 625

Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D++
Sbjct: 626 LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIH 685

Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +T  R F +  P  VT + R   K +   + Y              G+        + T
Sbjct: 686 TSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYIDT 742

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                          R   + N +    
Sbjct: 743 Y--------------------------------------------FERYPGIKNYMETVV 758

Query: 529 EQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            +  + G    +  +RR +P +              + R+   R     R+ +N+     
Sbjct: 759 REAKDKGYVETLFHRRRSLPDI--------------NSRNFNIRQF-AERTAINSP---- 799

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDE 641
                         +Q  + DIL   M+N  +  Y       ++L VHDEIV E P+ + 
Sbjct: 800 --------------IQGSAADILKIAMINLDRVLYKGGYKSKMLLQVHDEIVLEVPNEEI 845

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAE 666
                L    M S  S    +PL A+
Sbjct: 846 GAIKELVTKTMESAIS--LSVPLIAD 869


>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 924

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 92/549 (16%), Positives = 175/549 (31%), Gaps = 78/549 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKA 111
           + LK  LE+  V  +  N  F+  VL   F   I +     T++++           +  
Sbjct: 394 KKLKPLLEDPSVKKIGQNIKFDFIVL---FKQGIEMTSMEDTMLMSYVLDAGKNRHNMDT 450

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E       K    KE++    K                       +Y   D  +T  +
Sbjct: 451 LSEIH--LGHKTISFKEIVGTGKKEINFS----------DVEIERAKDYAAEDADITFRL 498

Query: 172 FKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +K+                 E+ L  +   +   G  VD     TL+   + +   L++E
Sbjct: 499 YKKFSKNLKLEKMINIYEIFEKPLIKILAFMEMEGVEVDNKFLKTLSSKFEKKIKNLEKE 558

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +  ++     +    ++L   ++ +  +  L+   + +     S  + L           
Sbjct: 559 IFKISK-KDFNIASPKQLGEIIYNDLKIAELKKTKKGSFATSASVLEDLA---------- 607

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                    K +   + +         L +   S+         P    P   R H    
Sbjct: 608 --------FKGHKFPKLV---------LDWRQVSKLKNTYSDSLPEHINPNTKRVHTSFL 650

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              T      +SDP+   I         +R    + +   L+ AD   IE R+LA +A  
Sbjct: 651 LAATTTGRLASSDPNLQNIPIKSEDGRDIRKAFTSRKNHLLISADYNQIEMRILADLADV 710

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   KAF+  ED++  T ++ FNV   +V +DQR   K +   + Y        K  + +
Sbjct: 711 KELKKAFKNDEDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYGISQYGLAKQINVS 770

Query: 456 GLNLNTF--AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                 F  A+  K         D   FCR           +  ++     R +  +   
Sbjct: 771 NYEAEEFLDAYFAKFPEIKIYMNDTIKFCR-----------KSGYVNNIFGR-RSHFNGI 818

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYR 571
           + +   + N   +A       G A    +   + L     DK N+   ++L     L++ 
Sbjct: 819 NDKNFNVRNFQERAAINAPIQGSASEIMRLAMIRLNKKLSDKKNIQSKMLLQIHDELIFE 878

Query: 572 DVGNNRSYL 580
              NN   +
Sbjct: 879 VPKNNEKTM 887


>gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
 gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
          Length = 909

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 108/650 (16%), Positives = 197/650 (30%), Gaps = 144/650 (22%)

Query: 39  DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           D      D    DP   + L   L + D     H +      +         +       
Sbjct: 368 DGDGRYIDTTRLDPEDEKALASWLADPDAPKALHEAKL---AMHDLQGRGWTLAGVTSDT 424

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            LA     P        +  L    +   K  +      +    L D +     +A +  
Sbjct: 425 ALAAYLVRPGQ-----RSFALDDLSLRYLKRELRADNPEQQQLSLLDDSDAVDDQAVQTL 479

Query: 158 GEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  V +   + + L  + S       E  +  +   +   G  VD+A+   L    
Sbjct: 480 LLRAGAVVDLADALDEELARIDSSALLGSMELPVQRVLAQLETVGIAVDLAMLSELQSEF 539

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             +     +   ++  G   +    ++L+  LF E  +     T+T       + + L  
Sbjct: 540 AGQIRDAAEAAYAVI-GKQINLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLFD 598

Query: 272 QAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           +    F   + A R A    + ++ L+ ++ +DGR+  T                     
Sbjct: 599 KTGHPFLQHLLAHRDATRLKVTVDGLLNSVAADGRIHTT--------------------- 637

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLA 382
                      +Q I       +++P+   I         +R   +  EG   L+ AD +
Sbjct: 638 ----------FNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDGFVVGEGYADLMTADYS 687

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ +   ++AF TGEDL+    +R+F+V   +VT + R   K M   L Y 
Sbjct: 688 QIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYGLAYG 747

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             A    +    +                                               
Sbjct: 748 LSAYGLSQQLKIS----------------------------------------------- 760

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            E  K+   Q  +R   + + L    +Q  ++G       RR                 L
Sbjct: 761 TEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRY---------------L 805

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
           P   S                + +  RE      L   I Q  + DI+   M+N  +A  
Sbjct: 806 PELDS----------------SNRQVREAAERAALNAPI-QGSAADIIKVAMINVDQAIK 848

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
                  ++L VHDE++ E  D +      L    M S  ++   +PL+ 
Sbjct: 849 EAGLSSRMLLQVHDELLFEVADGERDALDALVREHMGS--AYRLDVPLEV 896


>gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
 gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
          Length = 878

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 99/605 (16%), Positives = 186/605 (30%), Gaps = 139/605 (22%)

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           A     + +      L+L      P +L     A  +      +       + KG   + 
Sbjct: 382 AFLRFGVELRGVDFDLMLGAYIVNP-SLTYTDMASIVQEYGHNDVSTNEQIYGKGAKKKV 440

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             D     H           +  +    E  ++ +     E  L  +   +   G  V+ 
Sbjct: 441 PEDAILHEHIARKARTIWKVRPLIMAKLEDNEQFDLYDKLELPLATVLGQMESLGVMVNR 500

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---T 258
                + + +  +  K++ ++  L  G   +    ++L   LF + GL     T+T   T
Sbjct: 501 DQLVEMGKELAHKLEKIESDIHGLA-GQEFNINSPKQLGVILFEKLGLPALKKTKTGYST 559

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +        +   R      +   +  L++ ++ DG++    Q         
Sbjct: 560 AADVLEKLEGQHEIISHILMYRQLGKLLSTY-IEGLLKEIHEDGKIHTRFQ--------- 609

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE- 372
                                 Q +T      + +P+   I         +R   + SE 
Sbjct: 610 ----------------------QALTTTGRLSSINPNLQNIPVRLEEGRKIRKAFVPSEP 647

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V AD + IE RVLA M+ ++  ++AF+   D++ TT +  F+V   +VT D R   
Sbjct: 648 GWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTASDVFHVTEEEVTSDMRRAA 707

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y        +      +     A  +      E +  +    +    N    
Sbjct: 708 KAVNFGIVYGISDYGLSQ---NLNIPRKEAAAFI------ERYFASFPGVKSYMTNIVAD 758

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A  D F+ T                                     +  +RR +P +   
Sbjct: 759 AKRDGFVTT-------------------------------------LMNRRRYLPDITSS 781

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                      + RS         R+ +NT                   +Q  + DI+ +
Sbjct: 782 NF---------NLRSFA------ERTAMNTP------------------IQGSAADIIKK 808

Query: 613 GMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAK-----GL 661
            M++   A         ++L VHDE++ E P         L HLM   P   +      +
Sbjct: 809 AMIDMDAAIEREGLQARMLLQVHDELIFEAPP------EELDHLMKLVPEVMENAVKLSV 862

Query: 662 PLKAE 666
           PLK +
Sbjct: 863 PLKVD 867


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
          Length = 876

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +   G  VD      + + +  +   ++Q +  L  G   +    +
Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLGTVEQRIYELA-GQEFNINSPK 532

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF +  L +   T+T         +KL P                    + +VE 
Sbjct: 533 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 572

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L +    +              P   + H   +Q +T      +++P+  
Sbjct: 573 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 624

Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + SE    +  AD + IE RVLA +A +   ++AF    D++  
Sbjct: 625 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 684

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F V+  +VT + R   K +   + Y         +A    ++    A  +     
Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 736

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E + ++    +   EN  + A +  ++ T                              
Sbjct: 737 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 767

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                     +RR +P +                R+   R     R  +NT         
Sbjct: 768 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 795

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M++        +    ++L VHDE++ E P  +     
Sbjct: 796 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 845

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            L   +M    +    +PLK +
Sbjct: 846 RLVPEVMEQAVT--LRVPLKVD 865


>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
 gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
          Length = 875

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 93/638 (14%), Positives = 197/638 (30%), Gaps = 148/638 (23%)

Query: 57  LKEALENTDVTIVA---------HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
           L+ AL +      A         +++      L+      + +      L++      P+
Sbjct: 347 LETALASDAFKKWAADEKMKKSVYDAKRSIVALRRQ---GVELTGVEFDLLIVSYILNPA 403

Query: 108 --ALKAVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGD 164
             A    G A K  +  +E  + +  +  K     E     +              C+  
Sbjct: 404 ESADDFAGVAKKHGASVIESDEAVYGKGAKRKVPEEEKLAEHLARKANVVYELKSTCEE- 462

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                + ++     +  E  L  +   +   G  VDV     +   +     ++++++  
Sbjct: 463 ALKENDQYQLF---TDLELPLAIILADMEYTGVGVDVDRLKEMKSELAERLDEMEKKIYE 519

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF +  L +   T+T       VL   +        + + R 
Sbjct: 520 LA-GEEFNINSPKQLGVILFEKLELPVIKKTKTGYSTSADVLEKLQSKHEIIDHILHYRQ 578

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               ++ H   +Q
Sbjct: 579 L-GKLQSTYIEGLLKVIHED------------------------------SNKVHTRFNQ 607

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
            +T      ++DP+   I         +R   I SE    +  AD + IE RVLA +AG+
Sbjct: 608 ALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSEKNWLMFAADYSQIELRVLAHIAGD 667

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF  G D++  T    F+V    VT + R   K +   + Y        +   + 
Sbjct: 668 EKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAVNFGIVYGISDFGLSQ---SL 724

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        ++       + D+    +   ++    A ++ F+ T  +R     R+   
Sbjct: 725 GITRKEAGEFIQ------RYLDSYPGVQEYMDDIISEAKQNGFVKTLLQR-----RRYIP 773

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++                                               R+   R    
Sbjct: 774 EITS----------------------------------------------RNFNLRSF-A 786

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
            R+ +NT                   +Q  + DI+ + M++             ++L VH
Sbjct: 787 ERTAMNTP------------------IQGSAADIIKKAMIDMAARLEKENLQTRLLLQVH 828

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P+ +      +   +M +       +PLK +
Sbjct: 829 DELIFEAPEDEIERLKEIVPEVMENAVE--LEVPLKVD 864


>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
 gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
          Length = 912

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 105/657 (15%), Positives = 184/657 (28%), Gaps = 158/657 (24%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            +   A    D      D            L + L + D   V H        L A +  
Sbjct: 357 ELTGIALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQKVVHEVK---GPLLAVWAR 413

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
              +   +    LA    LP   +      A++   +++++           E  +   D
Sbjct: 414 GWDLAGVVSDTALAAYLALPGQRSFDLADLAVRYLRRELKDSAA--------EETQLTLD 465

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREI---FKRLEPLSSK----------EQELWYLDQT 191
              P+  +   L  E    DV     +      L+ L  +          E  L ++   
Sbjct: 466 GMGPSEED---LAREAAHADVLKAVAVNDLSDALDSLLGQRGGDALLGGIELPLTFVLAR 522

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +  RG   D+   H L +           E  ++  G   +    ++L+  LF E GL  
Sbjct: 523 MEQRGIAADLDFLHELQREFADGVAAAAAEAYAVI-GREVNLGSPKQLQAVLFDELGLPK 581

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
               ++       +   L  Q    F   +   R                 RLR  +  L
Sbjct: 582 TKKIKSGYTTDAEALTNLLAQTGHPFLEHLLRHRDVT--------------RLRTVIDGL 627

Query: 312 GASRTGRWSGCVFPPQNLPR---PSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
                            +P      R H    Q I       + DP+   I         
Sbjct: 628 -----------------IPMVDDGGRIHTTFQQTIAATGRLSSIDPNLQNIPIRTAEGRR 670

Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +   G + L+ AD + IE R++A ++G+   ++AF +GEDL+    +R++++   
Sbjct: 671 IRQAFVVGSGHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIE 730

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            V  + R   K M   L Y   A     +A    +++                       
Sbjct: 731 DVDPEMRRRIKAMSYGLAYGLSAY---GLAGQLRISVEEA-------------------- 767

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                   ++       R   +   L    +   + G       
Sbjct: 768 ------------------------REQMHAYFERFGGIREYLDGVVDDARQTGYTETTLG 803

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR                 LP                  T+     R+      L   I 
Sbjct: 804 RRRY---------------LPDL----------------TSDNGQRRQMAERMALNAPI- 831

Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYHL-MT 652
           Q  + D++   M+   +A  D      ++L VHDE+V E    +      L    M 
Sbjct: 832 QGSAADVIKVAMLRVEQAIADEGLRSRMLLQVHDELVLEVAPGEREALETLVRREMA 888


>gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317]
          Length = 877

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 176/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLT 270
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T     +   ++L 
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 271 PQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           P A+   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIALIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 868

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 87/496 (17%), Positives = 156/496 (31%), Gaps = 128/496 (25%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           + LE + S E  L  +   +   G  +D          V      L + +     G   +
Sbjct: 458 QLLELMDSLELPLIPVLADMEAVGVVLDDQNLKIFLVEVQNSLDHLTETIYHEAGGS-FN 516

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            R  ++L   LF +  L     T     +T Q VL       P    +   R      + 
Sbjct: 517 IRSAQQLGDILFNQLELPAAKKTRGGQASTSQEVLEKLSGQHPIIDTILEYRKLEKLRST 576

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                                P+ + +  R H   +Q+ T    
Sbjct: 577 YL--------------------------------EPLPRLIGKDGRVHTTFNQLATATGR 604

Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +S+P+   I     +   +RSC  AS+G  L+ AD + +E RVLA  + +   L AF 
Sbjct: 605 LSSSNPNLQNIPIRGSLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTAFL 664

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G D++  T +  +  +  +VT D+R   K +   L Y  G    QK+A      LN   
Sbjct: 665 EGADIHTRTASLLYEKSQEEVTADERRNAKTINFGLIYGMGP---QKLAQELNTTLNEAK 721

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +                                         + + +    + + +++
Sbjct: 722 KFI-----------------------------------------QRYFEHLQAIKKFYDQ 740

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           +  + ++        IA +RR +P ++                              N  
Sbjct: 741 VEHSAKEY--GYVTTIAGRRRLLPDIHS----------------------------ENIQ 770

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP 637
            + L R      +    I+Q  + DI+   M+         K    ++L VHDE+V E P
Sbjct: 771 LQALARR-----QAINTIIQGSAADIIKIAMLTVHGDTTLAKMDAQLILQVHDELVVEAP 825

Query: 638 DTDEFNA-SMLYHLMT 652
           + +       +  LM+
Sbjct: 826 EDNAKEVGKRIAMLMS 841


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +   G  VD      + + +  +   ++Q +  L  G   +    +
Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 532

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF +  L +   T+T         +KL P                    + +VE 
Sbjct: 533 QLGVILFEKLQLPILKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 572

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L +    +              P   + H   +Q +T      +++P+  
Sbjct: 573 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 624

Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + SE    +  AD + IE RVLA +A +   ++AF    D++  
Sbjct: 625 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 684

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F V+  +VT + R   K +   + Y         +A    ++    A  +     
Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 736

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E + ++    +   EN  + A +  ++ T                              
Sbjct: 737 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 767

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                     +RR +P +                R+   R     R  +NT         
Sbjct: 768 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 795

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M++        +    ++L VHDE++ E P  +     
Sbjct: 796 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 845

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            L   +M    +    +PLK +
Sbjct: 846 RLVPEVMEQAVT--LRVPLKVD 865


>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
 gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
          Length = 1027

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 101/621 (16%), Positives = 182/621 (29%), Gaps = 91/621 (14%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------Q 55
            L ID ET S           +A    ++  +  +                P        +
Sbjct: 449  LAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVIE 498

Query: 56   VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113
            +L++ LE++ +  V HN  F+  VL+   +  + +       ++A               
Sbjct: 499  ILRDVLESSAIEKVGHNLKFDVIVLR---SAGVQLGGITMDTMVADYLLNSGGRNHGLDD 555

Query: 114  EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             A +         K+LI    K  T + +                 Y   DV V   +  
Sbjct: 556  LAQRRLDHTNLSIKDLIGTGKKQITMDQVPV----------DDVSPYACEDVDVPIRLAP 605

Query: 174  RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             L                E  L  +   +   G  V+      +++  D +   L   + 
Sbjct: 606  TLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALVF 665

Query: 224  SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
            S   G   +    ++L   LF E GL +   T+T       VLS        A  V    
Sbjct: 666  S-AAGHEFNLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVL--- 721

Query: 281  MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                        Q+  A++         P     +  R H    
Sbjct: 722  ----------------------------QYRQATKLKNTYIDALPQLICDKTGRVHTSFR 753

Query: 341  QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
            Q +       +S+P+   I         +R+   A  EG  L+ AD + IE RVLA  +G
Sbjct: 754  QDVAATGRLSSSEPNLQNIPIRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSG 813

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            ++  + A+    D++    A    +  ++VT D R I K +   + Y         +A T
Sbjct: 814  DEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPF---GLAKT 870

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQK 513
             G++ +     ++     + +   E F                 +G   E +  +   + 
Sbjct: 871  LGISNDEARDYIE--LYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKL 928

Query: 514  HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRD 572
                     E  +        G A    K   + +    K  +    L+L     L+   
Sbjct: 929  PESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLES 988

Query: 573  VGNNRSYLNTTTRQLTREYTY 593
                   L+ T R+       
Sbjct: 989  PDEELDALSDTIREAMTSVME 1009



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 34/276 (12%)

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG-LNLNTFAHLVKT 468
              T   S +    Q    +   GK +  A  +  G + +  + +    + L   AH    
Sbjct: 757  AATGRLSSSEPNLQNIPIRTEQGKAIRAA--FTAGREGWSLLGADYSQIELRVLAHYSGD 814

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             +    + D  +    +      + IE+  + +   R+ K           ++ +     
Sbjct: 815  EALIGAYHDDADIHTRVAAEV--NGIEESEVTSDLRRIAKTI-----NFGIVYGQSPFGL 867

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKN---NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
             +T+     I   + RD   +Y ++       ++  L   R+  Y      R       R
Sbjct: 868  AKTLG----ISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVR 923

Query: 586  QL-------TREYTYGGKLTENI-VQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
             L        R  T   ++  N+ +Q  + D++   M+              ++L +HDE
Sbjct: 924  DLAKLPESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDE 983

Query: 632  IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            ++ E+PD + +  +  +   MTS       +PLK +
Sbjct: 984  LLLESPDEELDALSDTIREAMTSVME--LDVPLKVD 1017


>gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6]
 gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6]
          Length = 877

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 101/534 (18%), Positives = 172/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  +        KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKSYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321]
 gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321]
          Length = 877

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            +     + ++L        L   EQ L ++   +   
Sbjct: 431 GVKKAIPEREKFLEHLARKLAVLIETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    ++   KL QE+  L  G   +    ++L   LF + GL LE   
Sbjct: 491 GITVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKTYIDTYF------------- 741

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELTEMKKLVKQTMEEAI 857

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 858 Q--LSVPLIAD 866


>gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 78/505 (15%), Positives = 157/505 (31%), Gaps = 128/505 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +   G  VD      + + +  +   ++Q +  L  G   +    +
Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 532

Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF +  L +   ++T       VL            +  +  +  +     +  L
Sbjct: 533 QLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAPYHEIVENILQHYRQLGKLQSTYIEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ +  D                                + H   +Q +T      +++P
Sbjct: 593 LKVVRPD------------------------------TKKVHTIFNQALTQTGRLSSTEP 622

Query: 355 DPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   + SE    +  AD + IE RVLA +A +   ++AF    D+
Sbjct: 623 NLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDI 682

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T    F V+  +VT + R   K +   + Y         +A    ++    A  +  
Sbjct: 683 HTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI-- 737

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               E + ++    +   EN  + A +  ++ T                           
Sbjct: 738 ----ERYFESFPGVKRYMENIVQEAKQKGYVTTLL------------------------- 768

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                        +RR +P +                R+   R     R  +NT      
Sbjct: 769 ------------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP----- 796

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEF 642
                        +Q  + DI+ + M++        +    ++L VHDE++ E P  +  
Sbjct: 797 -------------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEME 843

Query: 643 NASMLY-HLMTSNPSWAKGLPLKAE 666
               L   +M    +    +PLK +
Sbjct: 844 RLCRLVPEVMEQAVT--LRVPLKVD 866


>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
 gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
          Length = 897

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/490 (18%), Positives = 153/490 (31%), Gaps = 122/490 (24%)

Query: 173 KRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +RL PL    E+ L  +   +   G  VD      ++         L+  + +   G   
Sbjct: 490 ERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHA-AAGHPF 548

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +     +L   LF+E  L +    +T         +KL  Q                   
Sbjct: 549 NVASTRELAQVLFVELELPVVKRLKTGPSTDQDVLEKLAEQHALP--------------- 593

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                        R  L+    S+         P    P   R H    Q         +
Sbjct: 594 -------------RLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSS 640

Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           SDP+   I     +S  +R   +A  G +L+ AD + IE R+LA  + +   L+AF   E
Sbjct: 641 SDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRE 700

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A +F VAP QVT DQR I KV+   + Y   A    +      L  +    ++
Sbjct: 701 DVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQ---RLDLPPSEAQGII 757

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                            R + +   +  
Sbjct: 758 DRYFT--------------------------------------------RYAGVRRYIEW 773

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A E+    G++  +  + R +P +             P+ R+         R+ +NT   
Sbjct: 774 AVEEARAKGESRTLFGRARAMPEIGAPN---------PALRNAA------ERTAINTP-- 816

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         +    ++L VHDE+V E P+ 
Sbjct: 817 ----------------IQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPER 860

Query: 640 DEFNASMLYH 649
           +      L  
Sbjct: 861 ELEPVEALVR 870


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 105/596 (17%), Positives = 204/596 (34%), Gaps = 102/596 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-QVLK 58
             D ET S +D+          +  ++ F+F ++++        H        +  +  K
Sbjct: 331 SFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAK 380

Query: 59  EALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            A+   +    V  N  ++  ++K   N DI +  +  T++L+        +    +  K
Sbjct: 381 NAIIQLNRYKLVLQNFKYDYEIIKN--NFDIELRLYADTMILSWLLNTNEKVGLDYQIDK 438

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--- 174
               KM    +++    KGE    +                EY   D  +T  +FK+   
Sbjct: 439 YFDHKMISFTDVVK---KGENFSNV----------DIERACEYAAEDALMTLRLFKKQLE 485

Query: 175 ----------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                     L      E +  Y+   +   G  VDV L     ++ +    +L  ++  
Sbjct: 486 IFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQ 545

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
            T G   +    ++L   LF   GL     T+T       VL+           +   R 
Sbjct: 546 -TSGAEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYR- 603

Query: 282 RASRSAVLKLNTLVE--AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            A +     +  L+E  + + D R+  +    G                           
Sbjct: 604 EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTG--------------------------- 636

Query: 340 DQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
               T      + +P+   I +       +R   I  +G KLV  D + IE R+LA  + 
Sbjct: 637 ----TATGRLSSKNPNLQNIPTKSDSNIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQ 692

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AFE   D++  T  + F     +  K++R I K +   L Y  G+   +K+  T
Sbjct: 693 DKALVEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGS---KKLGET 746

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        + +      + +A    +   ++  + A  + ++ T   R  K     +
Sbjct: 747 LGIPSKEAKQYIDS------YFEAFKSVKDYLKSIEDFANINGYVKTLLNR--KRLFDFN 798

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           S  + +     +    T+  G A    K   + +    KD  N+ L+L     LV+
Sbjct: 799 SANAMMKAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVF 854



 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNA 644
           +  Y  +    + Q  + D++   M+N            ++L +HDE+V E    DEF  
Sbjct: 805 KAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVFEV--KDEFVE 862

Query: 645 SM---LYHLMT 652
            +   + ++M 
Sbjct: 863 EITFSIKNIME 873


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +   G  VD      + + +  +   ++Q +  L  G   +    +
Sbjct: 476 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 534

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF +  L +   T+T         +KL P                    + +VE 
Sbjct: 535 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 574

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L +    +              P   + H   +Q +T      +++P+  
Sbjct: 575 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 626

Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + SE    +  AD + IE RVLA +A +   ++AF    D++  
Sbjct: 627 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 686

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F V+  +VT + R   K +   + Y         +A    ++    A  +     
Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 738

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E + ++    +   EN  + A +  ++ T                              
Sbjct: 739 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 769

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                     +RR +P +                R+   R     R  +NT         
Sbjct: 770 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 797

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M++        +    ++L VHDE++ E P  +     
Sbjct: 798 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 847

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            L   +M    +    +PLK +
Sbjct: 848 RLVPEVMEQAVT--LRVPLKVD 867


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 112/670 (16%), Positives = 212/670 (31%), Gaps = 157/670 (23%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +   +++      ++     +   +  V I      F+R+ 
Sbjct: 325 FEILGDNYHTEPIIGFAWGNDK-QIYASTDTDLLKSDAFQTALSKAVNIY----DFKRSK 379

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           VL +   +D+P         LA+          +    +L +    E  E++        
Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192
           +     R  P          +  K        + ++L        L   E  L  +   +
Sbjct: 430 YGKGAKRAVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHSQSELLFDMELPLANVLAKM 489

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  V     + +     V   KL QE+  +  G   +    ++L   LF +  L LE
Sbjct: 490 EIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMA-GEEFNINSPKQLGVILFEKMELPLE 548

Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
               T+T     +   ++L P A  V                               L++
Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              ++             L    + H    Q +T      + DP+   I         +R
Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              + S E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  
Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T      + +     +
Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYINT------YFERYPGIK 750

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              EN    A +  ++ T                                        +R
Sbjct: 751 AYMENVVREAKDKGYVETLF-------------------------------------HRR 773

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R++P +              + R+   R+    R+ +N+                   +Q
Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800

Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656
             + DIL   M+N  KA    GY   ++L VHDEIV E P+ +      L    M +   
Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMKALVKETMEAAVE 860

Query: 657 WAKGLPLKAE 666
            A  +PL A+
Sbjct: 861 LA--VPLIAD 868


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 105/665 (15%), Positives = 196/665 (29%), Gaps = 171/665 (25%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           DD   +L D          L   LE      +AHN+ F+   L       I +       
Sbjct: 379 DDGTKDLLD---------ELSPLLE-GGPKKIAHNAKFDYMALYKH---GIRVSPLYFDT 425

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRL 156
            +A      +++     A      +M     LI +            +N+    E     
Sbjct: 426 SIAAFLLNETSVGLKDLAATRLGIQMTTIDSLIGKG-----------KNQKTMLEVSVDE 474

Query: 157 FGEYCKGDVTVTREIFKRLEP--LSSKEQELWY--------LDQTINDRGYCVDVALAHT 206
              Y   D  +T  +F  LE   +  K Q+L+Y        +   +   G  +D     +
Sbjct: 475 CARYACADADMTFRLFTMLEKEIVERKLQDLFYTLEMPLVPVLADMEMTGVAIDADALKS 534

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV---L 263
           L+  +  +   ++ ++  +  G   + +  ++L  +LF + GL     T          L
Sbjct: 535 LSTKLYEQIRDIESQIYEIA-GYEFNLKSPQQLSKFLFQDLGLKGIRKTSKGYSTDAATL 593

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
            +     P    + + R                                 ++        
Sbjct: 594 EALSGQHPVIDLILSYRQL-------------------------------TKLKDTYVDA 622

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS------- 371
            P        R H    Q         +SDP+   I     +   VR   +A        
Sbjct: 623 LPLMVSRSTGRLHTNFSQTSAVTGRLASSDPNLQNIPIRSSLGKEVRKAFVAGSPEKNNA 682

Query: 372 ---EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
              E   L+ AD + IE RVLA +  E    +AF    D++  T +R F V    V  + 
Sbjct: 683 IFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAFSRDIDIHALTASRLFGVPIESVDDNM 742

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R +GK +   + Y        ++A  TGL                               
Sbjct: 743 RRMGKTINFGIIYGMSGF---RLARDTGLEQREA-------------------------- 773

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                              K +  +  RV   + +L +  E+  +        +RR +P 
Sbjct: 774 ---------------NLFVKRYMDQFPRVKAYFEQLIKEAEK--KGYVETPLGRRRYLPD 816

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
           +     +        +                                     +Q ++ D
Sbjct: 817 ITSSNPQRREAARRAA---------------------------------INMPIQGMAAD 843

Query: 609 ILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL 661
           I+ + M++   A         ++L VHDE++ E  ++  +  A ++   M++    +  L
Sbjct: 844 IIKQAMIDVHSALEREGIKAKMILQVHDELLFEVAESQLDRAAEVIVREMSTAFDLSVPL 903

Query: 662 PLKAE 666
            ++AE
Sbjct: 904 VVEAE 908


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +   G  VD      + + +  +   ++Q +  L  G   +    +
Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 532

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF +  L +   T+T         +KL P                    + +VE 
Sbjct: 533 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 572

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L +    +              P   + H   +Q +T      +++P+  
Sbjct: 573 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 624

Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + SE    +  AD + IE RVLA +A +   ++AF    D++  
Sbjct: 625 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 684

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F V+  +VT + R   K +   + Y         +A    ++    A  +     
Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 736

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E + ++    +   EN  + A +  ++ T                              
Sbjct: 737 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 767

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                     +RR +P +                R+   R     R  +NT         
Sbjct: 768 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 795

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M++        +    ++L VHDE++ E P  +     
Sbjct: 796 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 845

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            L   +M    +    +PLK +
Sbjct: 846 RLVPEVMEQAVT--LRVPLKVD 865


>gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545]
          Length = 877

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 101/534 (18%), Positives = 172/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  +        KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKSYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +   G  VD      + + +  +   ++Q +  L  G   +    +
Sbjct: 476 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 534

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF +  L +   T+T         +KL P                    + +VE 
Sbjct: 535 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 574

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L +    +              P   + H   +Q +T      +++P+  
Sbjct: 575 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 626

Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + SE    +  AD + IE RVLA +A +   ++AF    D++  
Sbjct: 627 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 686

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F V+  +VT + R   K +   + Y         +A    ++    A  +     
Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 738

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E + ++    +   EN  + A +  ++ T                              
Sbjct: 739 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 769

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                     +RR +P +                R+   R     R  +NT         
Sbjct: 770 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 797

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M++        +    ++L VHDE++ E P  +     
Sbjct: 798 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 847

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            L   +M    +    +PLK +
Sbjct: 848 RLVPEVMEQAVT--LRVPLKVD 867


>gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
 gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
          Length = 881

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 114/665 (17%), Positives = 214/665 (32%), Gaps = 160/665 (24%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFER-TVLKACFNLD 87
           +I FA+G      +L+      ++   + KE LE T + +      F+R  VL +   + 
Sbjct: 338 IIGFAWGTKG---QLYASTDTGLLQTPIFKEFLEKTPLKVY----DFKRAKVLLSHLGIT 390

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +          LA+          +     L SQ      E++        +     R  
Sbjct: 391 L--QNPAFDSRLAKYLLSTVEDNEISTIASLYSQIALPLDEVV--------YGKGVKRAI 440

Query: 148 PNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           P                +          +   +L+ L   EQ L  +   +   G  V+ 
Sbjct: 441 PERAVLLEHLALKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIAGIKVER 500

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTC 259
                +    +V   +L QE+  L  G   +    ++L   LF +  L LE    T+T  
Sbjct: 501 QTLEDMQVENEVVLERLTQEIYELA-GEEFNINSPKQLGVILFEKLELPLEYTKKTKTGY 559

Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                VL     + P   ++   R  A   +   +  L + +  DG++            
Sbjct: 560 STAVDVLERLAPIAPIVSKILEYRQIAKIQSTY-VIGLQDWILEDGKI------------ 606

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                              H    Q +T      + DP+   I         +R   +  
Sbjct: 607 -------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPE 647

Query: 372 E-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429
           E    L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  VT + R
Sbjct: 648 EENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDR 707

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +++  G++       ++T                     
Sbjct: 708 RNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIETYF------------------- 745

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPL 548
                                     R   + + + +   +  + G    + ++RR++P 
Sbjct: 746 -------------------------ERYPGIKDYMERVVREARDKGYVETLFKRRREIPD 780

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
           +              + R+   R     R+ +N+                   +Q  + D
Sbjct: 781 I--------------NSRNFNVRGF-AERTAINSP------------------IQGSAAD 807

Query: 609 ILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661
           IL   M++  +A         ++L VHDEIV + P  +      L    M S    A  +
Sbjct: 808 ILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESAIELA--V 865

Query: 662 PLKAE 666
           PL+A+
Sbjct: 866 PLEAD 870


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 89/527 (16%), Positives = 162/527 (30%), Gaps = 138/527 (26%)

Query: 165 VTVTREIFKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           V + + ++  L  L          ++ E+ L  +   +   G+ VD        + ++ +
Sbjct: 426 VILLKRLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESK 485

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTP 271
              L++++  +  G   +    ++L   LF +  L +   T+T       VL        
Sbjct: 486 ILNLEKQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               + + RM                       +G LQ                    P 
Sbjct: 545 IVPLILDYRMYTKILTTY--------------CQGLLQA-----------------INPS 573

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H    Q  T      +SDP+   I         +R   I  EG  L+ AD + IE 
Sbjct: 574 SGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIEL 633

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA ++ ++  + AF+   D++  T A  F V    VT + R+  K +   + Y     
Sbjct: 634 RILAHISEDERLINAFKNNVDIHSQTAAEVFGVDIDDVTPEMRSQAKAVNFGIVYGISDY 693

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +A    ++    A  +  N   E +                       +    + +
Sbjct: 694 ---GLARDIKISRKEAAEFI--NRYFERYPK---------------------VKEYLDNI 727

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            K  R  +  V  L+N                   +RR V  +                 
Sbjct: 728 VKFARD-NGYVLTLFN-------------------RRRYVKDIKSA-------------- 753

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----- 621
                    NR+  N       R            +Q  + DI+   M+   +       
Sbjct: 754 ---------NRNARNY----AERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNL 794

Query: 622 -YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
              I+L VHDE++ E P +  +    ++   M +    A  +PL  E
Sbjct: 795 KSKIILQVHDELLIEAPYEEKDIVKEIVKREMENAV--ALKVPLVVE 839


>gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716]
          Length = 886

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 110/664 (16%), Positives = 198/664 (29%), Gaps = 144/664 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y E     L  F   D    L     D +    LK+ LE+  V     N+  +   L   
Sbjct: 334 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 389

Query: 84  FNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
             L + +      L+LA      S     L  +  A      + +E  E+  +  K    
Sbjct: 390 --LGVDLAGVNFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDE--EVYGKGAK--RA 443

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
               D     H           K  +       ++L      E+ L  +   +   G  V
Sbjct: 444 IPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHV 503

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D A    +   +     +L+Q +     G   +    ++L   LF +  L +   T+T  
Sbjct: 504 DAATLKEMGSKLVEREAELEQAIYQEA-GEEFNINSPKQLGVILFEKMKLPVIKKTKTGY 562

Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                VL       P    +   R   S+     +  L++ ++ D               
Sbjct: 563 STAVDVLEKLADRAPIVQDILAYRQ-ISKLQSTYITGLLKVIHQDD-------------- 607

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                            + H    Q +T      + DP+   I         +R     S
Sbjct: 608 ----------------QKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPS 651

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQR 429
             G K+  +D + +E RVLA + G++     F  G+D++  T  R F++ +  +VT + R
Sbjct: 652 APGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMR 711

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++       +++      +            + 
Sbjct: 712 RQAKAVNFGIVYGISDY---GLAQNIHVSRPQAHEFIQS------YFKEFPGVEKYVHDI 762

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            E A +  ++                                       +  +RR +P +
Sbjct: 763 VELAKQQGYVE-------------------------------------TLTHRRRYLPEI 785

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
           + K             RS         R  +NT                   +Q  + DI
Sbjct: 786 HAKSFTQ---------RSFA------ERMAMNTP------------------IQGSAADI 812

Query: 610 LAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           +   M+   KA         ++L +HDE+V E P+ +      L   +M S       +P
Sbjct: 813 IKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPSIMDSAVK--LDVP 870

Query: 663 LKAE 666
           LK E
Sbjct: 871 LKVE 874


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 96/513 (18%), Positives = 155/513 (30%), Gaps = 122/513 (23%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       L+  E  L  +   +   G  VD      L +               +
Sbjct: 485 DAELAKQAGTALLADVELPLIDVIAAMERDGIAVDRPYLEKLEERFATGVRDAATSAYEV 544

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L+  LF E  +     T+T       S + L  +    F   + A R
Sbjct: 545 I-GKEINLGSPKQLQVVLFDELQMPKTKRTKTGYTTDADSLQALFEKTEHPFLAYLLAHR 603

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            A               RLR T++  G  +T             PR +R H   +Q I  
Sbjct: 604 DAT--------------RLRQTVE--GLLKTIS-----------PRDARIHTTFNQTIAA 636

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKL 399
                ++DP+   I         +R   +  EG + L+ AD + IE R++A ++ ++  +
Sbjct: 637 TGRLSSTDPNLQNIPIRTEEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLI 696

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +GED +  T AR F+V P +VT++ RA  K M   L Y   A    +         
Sbjct: 697 DAFNSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAYGLSAYGLSQQLKI----- 751

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       +  K    +   R   
Sbjct: 752 ------------------------------------------GVDEAKGLMDEYFERFGG 769

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           + + L     +  ++G       RR                 LP                
Sbjct: 770 VRDYLRSIVIEAGKSGYTETILGRRRY---------------LP---------------D 799

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633
           L +  RQ  RE      L   I Q  + D++   M+    +         ++L VHDE+V
Sbjct: 800 LTSDNRQ-RREMAERMALNAPI-QGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELV 857

Query: 634 CETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
            E    +      L    M S    A  +PL  
Sbjct: 858 FEIAPGEREALEELVRRDMGSAVEMA--VPLDV 888


>gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 908

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 182/617 (29%), Gaps = 147/617 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +     V HN+    + ++        +        LA     P       +AL L  
Sbjct: 394 LADPARPKVFHNAK---SAMRVFAEHGWTVEGVGMDTALAAYLVKPGRRSFDLDALTL-- 448

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLEPLS 179
                 + L        T +           EA  L        D+       +RLE + 
Sbjct: 449 ------EYLGRELAPAATADGQLAFGADEGAEADALMVQARAILDLGAAFG--ERLEEVG 500

Query: 180 SK------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +       E     L   +   G   D      + Q+      +  +E  +   G   + 
Sbjct: 501 AAGLLRDVELPTSALLARMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHA-AAGHEFNL 559

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLK 290
              ++L+  LF E GL     T+T       +   L  Q    + V   R R      + 
Sbjct: 560 GSPKQLQEVLFGELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT 619

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++ + +DGR+                               H    Q +       
Sbjct: 620 VEGLIKTIAADGRI-------------------------------HTSFSQTVAATGRLS 648

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404
           ++DP+   +         +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +
Sbjct: 649 STDPNLQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTS 708

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GEDL+ T  A+ F V  + V  + R   K M   L Y   A    +      +       
Sbjct: 709 GEDLHTTAAAQVFGVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAGEARA 765

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           L+                                                 R   + + L
Sbjct: 766 LID--------------------------------------------AYFERFGGVRDYL 781

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +  ++  E G       RR                 LP                LN+  
Sbjct: 782 RRVVDEARETGYTATLFGRRRY---------------LP---------------DLNSDN 811

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE-TP 637
           RQ  RE      L   I Q  + DI+   M+N  +A         ++L VHDEIV E  P
Sbjct: 812 RQ-RREAAERMALNAPI-QGTAADIVKIAMLNVGRALDEAGLASRMLLQVHDEIVLEIAP 869

Query: 638 DTDEFNASMLYHLMTSN 654
              +    +L H M   
Sbjct: 870 GERDRTEQLLRHEMADA 886


>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
 gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
          Length = 879

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 95/633 (15%), Positives = 199/633 (31%), Gaps = 143/633 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALK 110
           +  KE +++        +S   R V+   ++ D+ +      ++LA     P      + 
Sbjct: 358 EAFKEWVQDETKKKWVFDSK--RAVVALRWH-DVDLKGVDNDVLLASYVVNPQKTYEDVA 414

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT-R 169
           +V +   L+    +E       + KG       +     H    +        D+T+   
Sbjct: 415 SVAKEYGLNIALSDE-----KVYGKGAKQAIPPEDELKEHLGR-KAAAISALHDLTLEAL 468

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E   + E     E  L  +   +   G  VD+     + + +  +  + ++ +  L  G 
Sbjct: 469 EKNDQHELYEDLELPLALILGEMESLGVKVDIKRLENMGEELTKKLKEYEETIHRLA-GE 527

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRS 286
             +    ++L   LF + GL +   T+T       VL   +        + + R    + 
Sbjct: 528 TFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSADVLEKLEDKHEIIRSILHYRQ-IGKL 586

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               +  L++    D                                + H   +Q +T  
Sbjct: 587 QSTYVEGLMKVTRKD------------------------------THKVHTRFNQALTQT 616

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               ++DP+   I         +R   + S EG  +  AD + IE RVLA ++ ++  ++
Sbjct: 617 GRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELRVLAHISQDENLIE 676

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF    D++  T    F+V+  +VT   R   K +   + Y        +     G+   
Sbjct: 677 AFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 733

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +      E +  +    +   E   + A +  ++ T                   
Sbjct: 734 EAAAFI------ERYLTSFKGVKTYMEEIVQEAKQKGYVTTLL----------------- 770

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                               ++RR +P +  +                        R+ +
Sbjct: 771 --------------------KRRRYIPDITSRNFN---------------IKSFAERTAM 795

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           NT                   +Q  + DI+ + M++        K   +++L VHDE++ 
Sbjct: 796 NTP------------------IQGSAADIIKKAMIDMARRLKEEKLQTNLLLQVHDELIF 837

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           E P  +      +   +M +       +PLK +
Sbjct: 838 EAPKEEIAILEKIVPEVMENALQ--LDVPLKVD 868


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/504 (18%), Positives = 172/504 (34%), Gaps = 120/504 (23%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            L   ++ E  L  +  ++ + G+ VD      L + ++ + ++L+  + +L  G   + 
Sbjct: 467 LLPLFTTIEMPLIEVLASMEEVGFSVDTDQLSELGKELESQLSRLESRIFALA-GEHFNI 525

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF    L     T+T       VL           +V N R  A   +   
Sbjct: 526 NSPKQLAEVLFQRLKLTPLKRTKTGYSTNVEVLQRLAVTHELPAEVLNYRSLAKLKSTY- 584

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                  ++   RL        A RT                 R H   +Q +T      
Sbjct: 585 -------VDVLLRL--------AERT---------------SGRIHTSFNQTVTATGRLS 614

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +S+P+   I         +R   +ASEG +L+ AD + IE R+LA ++ +Q  + AF  G
Sbjct: 615 SSEPNLQNIPVRTEVGRRIRQAFVASEGHRLLSADYSQIELRILAHLSQDQALIAAFIAG 674

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++ +T A  F V P  VT + R   KV+   + Y         +A+   ++    A  
Sbjct: 675 GDVHRSTAAEVFGVQPEAVTVEMRRRAKVINFGIVYGMSPF---GLAAELEISQEEAALY 731

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +      + +   + F         E                         VS  W    
Sbjct: 732 ID--RYFQIYHGVKAFIDRTICEARELGF----------------------VSTFW---- 763

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                           +RR +P +   K  +  +  L              R  +NT  +
Sbjct: 764 ---------------GRRRAIPEL---KSSDQTVRQL------------GERLAVNTPIQ 793

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
               +      L +  + A+SR       + + +    ++L +HDE++ E P+ +     
Sbjct: 794 GSAAD------LIKVAMIAISRR------LRSEQLETRMILQIHDELLFEVPEVE----L 837

Query: 646 MLYHLMTSNP-SWAKGL--PLKAE 666
            +   M +    WA  L  PLK +
Sbjct: 838 DVARRMATEEMEWAATLSVPLKVD 861


>gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
 gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
          Length = 740

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/516 (17%), Positives = 168/516 (32%), Gaps = 133/516 (25%)

Query: 171 IFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           I K+LE L       + E  L Y+  ++   G              + +  ++L++ +  
Sbjct: 327 ICKKLEKLQMLDLFYNIEMPLSYVLYSMEKEGIIARRDELKAYGDKLQIRISELEKSIYE 386

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              G+  +    ++L   LF   GL  E  T++         +KL P    V +      
Sbjct: 387 -AAGVEFNINSPKQLGEILFERLGLPAEKKTKSGYSTAADVLEKLAPDYPIVAD------ 439

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                  L++ G ++             +    R H   +Q IT
Sbjct: 440 ----------------------ILEYRGLAKLKSTYADGLAAY-IEEDGRIHTSFNQTIT 476

Query: 345 HLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +++P+   I     +   +R   +  E      AD + IE R+LA M+ +Q  +
Sbjct: 477 ATGRISSTEPNLQNIPMRTELGRLIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELI 536

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            A+  G+D++  T ++ F+V   +VT  QR   K +   + Y  G  +F  ++    +++
Sbjct: 537 AAYHEGKDIHGITASKVFHVPFEEVTPLQRRNAKAVNFGIVY--GISSF-GLSQDLSISV 593

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                            +A+ +     E +P                             
Sbjct: 594 K----------------EAKEYMDKYFETYP----------------------------G 609

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
           +     +      E G ++    RR                 +P  ++  Y  R  G  R
Sbjct: 610 VKAYQERVIADAKEKGYSLTMFGRR---------------RPIPELKASNYMMRQFGE-R 653

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
             +N                    +Q  + DI+   M+N        K    ++L +HDE
Sbjct: 654 VAMNAP------------------IQGTAADIMKIAMINVYFRLKKEKLVSKLILQIHDE 695

Query: 632 IVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           +V ET  D +E   ++L   M         +PL AE
Sbjct: 696 LVIETLKDEEEKVTALLTQEMERAAD--LSVPLLAE 729


>gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 916

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 110/664 (16%), Positives = 198/664 (29%), Gaps = 144/664 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y E     L  F   D    L     D +    LK+ LE+  V     N+  +   L   
Sbjct: 364 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 419

Query: 84  FNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
             L + +      L+LA      S     L  +  A      + +E  E+  +  K    
Sbjct: 420 --LGVDLAGVNFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDE--EVYGKGAK--RA 473

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
               D     H           K  +       ++L      E+ L  +   +   G  V
Sbjct: 474 IPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHV 533

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D A    +   +     +L+Q +     G   +    ++L   LF +  L +   T+T  
Sbjct: 534 DAATLKEMGSKLVEREAELEQAIYQEA-GEEFNINSPKQLGVILFEKMKLPVIKKTKTGY 592

Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                VL       P    +   R   S+     +  L++ ++ D               
Sbjct: 593 STAVDVLEKLADRAPIVQDILAYRQ-ISKLQSTYITGLLKVIHQDD-------------- 637

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                            + H    Q +T      + DP+   I         +R     S
Sbjct: 638 ----------------QKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPS 681

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQR 429
             G K+  +D + +E RVLA + G++     F  G+D++  T  R F++ +  +VT + R
Sbjct: 682 APGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMR 741

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++       +++      +            + 
Sbjct: 742 RQAKAVNFGIVYGISDY---GLAQNIHVSRPQAHEFIQS------YFKEFPGVEKYVHDI 792

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            E A +  ++                                       +  +RR +P +
Sbjct: 793 VELAKQQGYVE-------------------------------------TLTHRRRYLPEI 815

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
           + K             RS         R  +NT                   +Q  + DI
Sbjct: 816 HAKSFTQ---------RSFA------ERMAMNTP------------------IQGSAADI 842

Query: 610 LAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           +   M+   KA         ++L +HDE+V E P+ +      L   +M S       +P
Sbjct: 843 IKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPSIMDSAVK--LDVP 900

Query: 663 LKAE 666
           LK E
Sbjct: 901 LKVE 904


>gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae]
          Length = 877

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 100/533 (18%), Positives = 169/533 (31%), Gaps = 141/533 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  + G      KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
            LP   S  +   G                         + +Q  + DIL   M+   KA
Sbjct: 773 ELPDINSRNFNIRGFAE-----------------ATAINSPIQGSAADILKIAMIQLDKA 815

Query: 621 ----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
               GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 816 LVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/517 (17%), Positives = 155/517 (29%), Gaps = 79/517 (15%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + LK  L++  V  V  N+ ++ TV +      IP    I   +L               
Sbjct: 419 ERLKPLLQDASVLKVFQNAKYDLTVFR---GAGIPEITPIDDTMLISYAQSAGEHG---- 471

Query: 115 ALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                 Q M+E  EL        T+        +  P  + A      Y   D  VT  +
Sbjct: 472 ------QGMDELSEL-HLGHTPVTYDSVTGTGRKRIPFAQVAIEAATAYAAEDADVTLRL 524

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++ L P              E+ L  +   + D G  VD      ++         ++QE
Sbjct: 525 WQVLRPQLRTRQALALYEEIERPLIQILTDMEDVGIKVDATELRRMSADFAERMGTIEQE 584

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQV 276
           +     G   +    ++L   LF E GL     T++    T   VL S  +       ++
Sbjct: 585 IHE-QVGRSFNVGSPKQLGEILFDEMGLPGGKRTKSGSWGTDSGVLESLAEQGHELPQKI 643

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R  A                               +           Q      R H
Sbjct: 644 LAWRQLA-------------------------------KLKSTYADALVQQMDQDTQRVH 672

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                 IT      +++P+   I         +R   +A+ G  L+ AD + IE R+LA 
Sbjct: 673 TSFQMAITTTGRLSSNEPNLQNIPIRTEEGARIRKAFVATPGCVLLSADYSQIELRLLAH 732

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A  +  L+AF  G+D++  T +  F +    +    R   K +   + Y   A     +
Sbjct: 733 VAKIEPLLEAFRLGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAF---GL 789

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A    ++       +    A           R   E   E A +  ++ T   R +    
Sbjct: 790 AQQLQISPGEARSYIDAYFARYP------GIRAYMERTKEEAKKHGYVTTPFGR-RCYVP 842

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               +         +        G A    KR  V L
Sbjct: 843 GITEKNGARRAYAERQAINAPLQGGAADIIKRAMVHL 879


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
          Length = 880

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 98/641 (15%), Positives = 197/641 (30%), Gaps = 159/641 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110
           ++ K+  E+        +S      L     +++         +LA     P+     + 
Sbjct: 359 EIFKKWAEDESQKKWVFDSKRSVVAL-RWQGIEL--KGAEFDALLAAYIINPANTYDDVA 415

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           +V +   L     +E   +  +  K         R  P   E            V   RE
Sbjct: 416 SVAKDYGLHIVSSDE--AVYGKGAK---------RAVPGENELAMHLVRKAAA-VDSLRE 463

Query: 171 IFKRLEPLSSKEQELWYLDQ---------TINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             K L+ L + +Q   Y +           +   G  VDV     + + +     + +++
Sbjct: 464 --KLLQELENNDQLELYEELELPLALILGEMESIGVKVDVGRLERMGEELGARLKEYEEK 521

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFN 278
           +  +  G   +    ++L   LF + GL +   T+T       VL            +  
Sbjct: 522 IHEIA-GEPFNINSPKQLGVILFEKLGLPVVKKTKTGYSTSADVLEKLADQHDIVSYILQ 580

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R    +     +  L++ +  D                                + H  
Sbjct: 581 YRQ-IGKLQSTYIEGLLKVIRKD------------------------------SHKVHTR 609

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWM 392
            +Q +T      ++DP+   I         +R   + SE    +  AD + IE RVLA +
Sbjct: 610 FNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHI 669

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  ++AF    D++  T    F+VA  +VT   R   K +   + Y        +  
Sbjct: 670 SKDENLIEAFTNDMDVHTKTAMDVFHVAQDEVTPAMRRQAKAVNFGIVYGISDYGLSQ-- 727

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+     A  +      E + ++    +   E   + A +  ++ T           
Sbjct: 728 -NLGITRKEAAAFI------ERYLESFKGVKVYMEESVQEAKQKGYVTT----------- 769

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                                     + ++RR +P +  +           + RS     
Sbjct: 770 --------------------------LMQRRRYIPELTSRNF---------NLRSFA--- 791

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVL 626
               R+ +NT                   +Q  + DI+ + M++             ++L
Sbjct: 792 ---ERTAMNTP------------------IQGSAADIIKKAMIDMAAKLKEKQLKAKLLL 830

Query: 627 TVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
            VHDE++ E P  +      L   +M    +    +PLK +
Sbjct: 831 QVHDELIFEAPKEEIKLLEKLVPEVMEHALN--LDVPLKVD 869


>gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159]
 gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159]
          Length = 878

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 112/670 (16%), Positives = 217/670 (32%), Gaps = 157/670 (23%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYFER- 77
             ++        +    + D    ++      ++   L KEAL     T       F+R 
Sbjct: 324 FEILNDNYHTQEMIGLAWGDDQA-IYATTDTSLLTHDLFKEALSKPIKTY-----DFKRG 377

Query: 78  TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKG 136
            VL +   +D+P         LA+          +    +L +   +E   ++  +  K 
Sbjct: 378 KVLLSHLGIDLPTAS--FDSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKR 435

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
              E     +    + +  L  E              +L+ L   E  L  +   +   G
Sbjct: 436 AIPEKNVLLSHLAKKISVLLASEEPMRQ---KLSANDQLDLLFEMELPLANVLAKMEIAG 492

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254
             V       + +  ++E   L QE+  L  G   +    ++L   LF + GL L     
Sbjct: 493 ISVRKETLQDMERANEIELQALTQEIYDLA-GEAFNINSPKQLGVILFEKLGLPLSATKK 551

Query: 255 TETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+T       VL      +P   ++   R  A   +   +  L ++++ DG++       
Sbjct: 552 TKTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQSTY-IIGLQDSISFDGKI------- 603

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366
                                   H    Q +T      + DP+   I         +R 
Sbjct: 604 ------------------------HTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRK 639

Query: 367 CVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +    +  L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  V
Sbjct: 640 AFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDV 699

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +   + Y         +A+  G++     + ++T                
Sbjct: 700 TPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKNYIETYF-------------- 742

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKR 543
                                          R   + N + +   +  + G    +  +R
Sbjct: 743 ------------------------------ERYPGIKNYMDRVVREARDKGYVETLFHRR 772

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R++P +  +           + RS         R+ +N+                   +Q
Sbjct: 773 RELPDINSRNF---------NIRSFA------ERTAINSP------------------IQ 799

Query: 604 AVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656
             + DIL   M++  +A         ++L VHDEIV E P+ + E    ++   M S   
Sbjct: 800 GSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQKLVKETMESAIE 859

Query: 657 WAKGLPLKAE 666
               +PL A+
Sbjct: 860 --LSVPLVAD 867


>gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334]
          Length = 881

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/655 (15%), Positives = 199/655 (30%), Gaps = 165/655 (25%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101
             +          L    V     ++  + TV     N+       + +      ++LA 
Sbjct: 345 TKEETYVSTDVTLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404

Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
               P      L  + E      L   +   GK                 R  P   + +
Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450

Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             F       +    D+T   E  ++ +  +  E  L  +   +  +G  ++      + 
Sbjct: 451 GQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265
                    L++++ +   G+  +    ++L   LF +  L +   T+T       VL+ 
Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K  +P    +                                 + G ++          
Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380
              LP   + H    Q +T      + DP+   I +      +R   + S EG ++  +D
Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R   K     +
Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y        +     G++       +                                 
Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558
                     + + H       + +    ++  E+G    +  +RR +P ++        
Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R+   R     R+ +NT                   +Q  + DI+   M+   
Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           KA         ++L VHDE++ E P+ +    S L   +M S       +PLK E
Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 921

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 177/515 (34%), Gaps = 136/515 (26%)

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E+++ L      E  L  +   +  RG  +D A   +    V      L   +     G 
Sbjct: 514 ELYESL------ELPLTPILADMERRGIAIDAAAFESFLSDVQGRLDTLTAAVYE-AAGR 566

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             + R  ++L   LF    L     T+    +T Q  L       P    V   R +  +
Sbjct: 567 EFNIRSAQQLGDVLFSTLELPSPRKTKGGQASTSQDTLEKLAGRHPVVDSVLEFR-KLEK 625

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                L+ L   M+ +GR+                               H   +Q  T 
Sbjct: 626 MRSTYLDPLPRLMDGNGRI-------------------------------HTTFNQKATA 654

Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +S+P+   I     +   +R+C IA+ G  LV AD + +E RVLA M+ ++  L+
Sbjct: 655 TGRLSSSNPNLQNIPVRGDLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLE 714

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  GED++  T A  +++AP QV+ DQR   K +   L Y  GA   QK+     ++ +
Sbjct: 715 AFRNGEDIHARTAALVYDLAPDQVSPDQRRNAKTINFGLIYGMGA---QKLGQDLKISTS 771

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                            +  + + + E 
Sbjct: 772 EAK-----------------------------------------EFIARYFSRLTGLKEF 790

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
           ++ +    ++  +     +  +RR +P ++            P+G++         R  +
Sbjct: 791 YDSVEATAKR--QGYVTTLGGRRRLLPDIHS-----------PNGQAYALAR----RQAI 833

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVC 634
           NT                  ++Q  + DI+   M+         +    ++L VHDE++ 
Sbjct: 834 NT------------------VIQGSAADIIKLAMLAVAEDEQLREHEARLLLQVHDELLL 875

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGL--PLKAE 666
           E P+     A + +  LM+S     + L  PL  +
Sbjct: 876 EVPEASARAAGARVADLMSSVKPGGEPLSVPLVVD 910


>gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368]
          Length = 877

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/534 (18%), Positives = 172/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  +        KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKSYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/624 (13%), Positives = 178/624 (28%), Gaps = 158/624 (25%)

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKL 118
           ++ +    +++  +  +L   + ++I        ++LA     P     +L     AL  
Sbjct: 390 DSKIKKCCYDTKADLWLL-HYYGIEINQPG--FDVMLADYLLNPGKSARSLPE--TALSH 444

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
               ++EG E                   P   E      +     +     + ++    
Sbjct: 445 LDIVLQEGSETY----------------LPASAEVISRLVDI----LQSKLLLQEQENLY 484

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +  ++   G  VD      +++ ++ +   L  ++     G + +    ++
Sbjct: 485 YDIELPLLKVLASMERTGVSVDKEQLQLMSEELNKKLQVLTTDIYEHA-GEIFNINSTKQ 543

Query: 239 LKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L + LF +  L     T+T       VL       P    +   R               
Sbjct: 544 LGSILFEKLKLKAGKKTKTGYSTDVTVLEELAGDHPVVSLLLEYRQL------------- 590

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                             ++              P+  + H    Q +T      +S+P+
Sbjct: 591 ------------------AKLKSTYVDGLTGLINPQTGKLHTTFHQAVTATGRLSSSEPN 632

Query: 356 PLQII-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              +         +R   +  +    +  AD + IE R+LA +A +   + AF   +D++
Sbjct: 633 LQNVPIRLDAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQDIH 692

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +  F VA  +VT + R   K +   + Y         +A    +        +   
Sbjct: 693 TRTASEVFGVAMDEVTPEMRGRAKAVNFGIVYGISDF---GLAKDIKVTRKEAGRYINNY 749

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                     +  +   +     A E  ++                              
Sbjct: 750 FNRY------SGVKAYIDRVIREAREKGYV------------------------------ 773

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                    I  +RR +P ++                  V R  G  R+ +NT       
Sbjct: 774 -------TTILNRRRYLPDLFSSNR--------------VVRSFGE-RTAMNTP------ 805

Query: 590 EYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M      M   K    ++L VHDE++ +   ++   
Sbjct: 806 ------------IQGSASDIIKLAMVLIYREMRKRKLSSTMILQVHDELIFDVVASEVEE 853

Query: 644 ASMLYH-LMTSNPSWAKGLPLKAE 666
              L    M +       +PL  +
Sbjct: 854 MQNLVKYYMENAVE--LSVPLVVD 875


>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
           Position
 gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
 gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
           Position
 gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site
           (- 1 Basepair Position)
 gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
 gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
           Site
 gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
           Site (-1 Basepair Position)
          Length = 580

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
 gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
          Length = 580

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna.
 gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 10 Base Pairs Of Duplex Dna
           Following Addition Of A Single Dttp Residue
 gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 11 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp And A Datp Residue.
 gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 15 Base Pairs Of Duplex Dna
           Following Addition Of Dttp, Datp, Dctp, And Dgtp
           Residues.
 gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 12 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp, A Datp, And A Dctp
           Residue.
 gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
 gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
 gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
 gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site
 gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
 gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
 gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
 gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
 gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
 gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Two Rounds Of Primer
           Extension, Following Incorporation Of Dctp And Dgtp.
 gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Three Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, And
           Dttp.
 gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Five Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
           And Datp.
 gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Cytosine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
           Benzo[a]pyrene Adduct That Blocks Replication
 gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As
           Yet Unnamed) Dna Polymerase Fragment
          Length = 580

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 881

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/655 (15%), Positives = 199/655 (30%), Gaps = 165/655 (25%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101
             +          L    V     ++  + TV     N+       + +      ++LA 
Sbjct: 345 TKEETYVSTDVTLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404

Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
               P      L  + E      L   +   GK                 R  P   + +
Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450

Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             F       +    D+T   E  ++ +  +  E  L  +   +  +G  ++      + 
Sbjct: 451 GQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265
                    L++++ +   G+  +    ++L   LF +  L +   T+T       VL+ 
Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K  +P    +                                 + G ++          
Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380
              LP   + H    Q +T      + DP+   I +      +R   + S EG ++  +D
Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R   K     +
Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y        +     G++       +                                 
Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558
                     + + H       + +    ++  E+G    +  +RR +P ++        
Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R+   R     R+ +NT                   +Q  + DI+   M+   
Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           KA         ++L VHDE++ E P+ +    S L   +M S       +PLK E
Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870


>gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
           Active Site
 gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
           Site
 gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
 gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
 gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
 gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A
           Dna Polymerase
 gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
           At The Polymerase Active Site
          Length = 580

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
 gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
          Length = 863

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 136/403 (33%), Gaps = 52/403 (12%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             +  L  +  ++   G  +D  L    ++ +  +  ++++++     G   +    ++L
Sbjct: 471 ELDLPLARVLLSMERLGVRIDKDLLAKQSEELAKDIAEIEKQIHE-AAGESFNVGSPKQL 529

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
              LF + GL     T+T           L  P A  V   R                  
Sbjct: 530 GVILFEKLGLPAGKKTKTGYSTDEEVLLGLEHPIAKLVLQWR------------------ 571

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                          S+         P    P+  R H   +Q +T      ++ P+   
Sbjct: 572 -------------EMSKLKSTYVDALPTMIDPKDERVHTSFNQALTTTGRLSSTQPNLQN 618

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         VR   IA+   KL+  D + IE R+LA ++ +    KAF    D++  T 
Sbjct: 619 IPIRTARGQQVRKAFIAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATA 678

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F V    VT + R   K +   + Y  GA     +A   G++      ++      E
Sbjct: 679 AEVFGVPLKDVTAEHRRSAKAVNFGIAYGQGAF---GLAENLGISRTEAKDII------E 729

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            + +     R   +   + A E  ++ T   R ++   +  S+   L     +A      
Sbjct: 730 RYFNRFKNVREYIDGTIKMAHEKGYVETLFGR-RRYIDELQSKNMALKKFGERAAINAPI 788

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            G A    K+  + +     +K  + ++L     L++ D   N
Sbjct: 789 QGTASDLVKKAMIEV----FEKVPVRMLLQVHDELIFEDFEEN 827


>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
          Length = 687

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 99/601 (16%), Positives = 192/601 (31%), Gaps = 133/601 (22%)

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           ++         +  +   L LA       A         L  +  E   +L+ +      
Sbjct: 194 MMHLLQRYGFYVPSFKEDLHLAAFLLHSQATDTDSLISSLGIELPETIHDLLKK--AKTV 251

Query: 139 HECLYDRNKP-NHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
             C  DR  P      W+L        D     +    L+   + E+ L  +   + ++G
Sbjct: 252 EACHIDRLLPVTCAWTWQLSIRQDNIFD---ELKKDNLLDLYENIEKPLVRILFEMENQG 308

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             +D  +   +    D     L Q++  + + +V +    ++L   L+ E  L       
Sbjct: 309 IHIDENVLDEIGAKTDTILESLTQQIHEMAH-MVFNINSPKQLAGVLYDELNLKGGGKKR 367

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL   K   P    + + R + S+     +  L + +  D               
Sbjct: 368 STSAEVLEKLKGSHPIIDVLLDYR-KYSKIKSTYIEGLKKHIQQD--------------- 411

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                           S+ H   +Q +T      +SDP+   I         +R   +A 
Sbjct: 412 ----------------SKIHTCFNQAMTQTGRLSSSDPNLQNISVRDEQGREIRKAFVAQ 455

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +G KL+ AD + IE R+LA MA E   ++AF+ G D++  T +  F+V+   VT D R +
Sbjct: 456 KGYKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRV 515

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y        +      ++       ++T                       
Sbjct: 516 AKTVNFGIVYGQTEFGLSQ---QLKISRKEAGEFMETYF--------------------- 551

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                                 +  + +  N+L    ++        +  +RR +P +  
Sbjct: 552 --------------------ASYPNIHQFMNQLIDFCKE--NGYVETMFHRRRMIPEI-- 587

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
             DKN +                  R+ +N                    +Q  + D++ 
Sbjct: 588 -NDKNFMTREF------------GKRAAMNAP------------------IQGSAADLIK 616

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLK 664
             M+   +A         ++L +HDE++   PD + E   +++   M         +PLK
Sbjct: 617 IAMIRVDQAMKEKNVKSKMLLQIHDELIFLVPDDELEVMQALVKEAMEQAME--LKVPLK 674

Query: 665 A 665
           A
Sbjct: 675 A 675


>gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 98/613 (15%), Positives = 194/613 (31%), Gaps = 99/613 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL--KE 59
           D ET S   L          +  V  F+    +     +             P+++  K+
Sbjct: 372 DCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAFKD 421

Query: 60  A------LENTDVTIVAHNSYFERTV-LKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           A      L ++ +T++ HN  F+    L +     I       T++ A       +    
Sbjct: 422 AQRAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGISA-NLFDTMIAAWLLDPARS---- 476

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                  S  M++  E I    K    + L    +            Y   D  +T   +
Sbjct: 477 -------SYGMDKLAESI-LGVKTIRFKDLVKTGQNFSDIPLNEACPYAAEDADITFRFY 528

Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           K+  PL  K          E  +  L   +  +G  +        ++ +  E    ++++
Sbjct: 529 KKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCEKDI 588

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNN 279
             L  G   +    ++L+  LF E  L     T+T       VL +     P   ++   
Sbjct: 589 YRL-VGHEFNIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPAKIL-- 645

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         +   ++         P     +  R H   
Sbjct: 646 -----------------------------DYRALAKLKSTYTDTLPKMTD-KNGRIHTSF 675

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            Q  T      + DP+   I         +R    A +G+ L+ AD + IE  +LA ++ 
Sbjct: 676 IQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLSK 735

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  ++AF  G D++  T +  F V    V++D R I K +   + Y   A    ++AS+
Sbjct: 736 DQNLVEAFNKGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAF---RLASS 792

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +        +K       +    +          + A +  ++ T   R ++     +
Sbjct: 793 LRIPRKRADEFIKA------YFATYSGVSGFMAQVCQEAEQRGYVETLMGR-RRYLPAIN 845

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDV 573
           S+         +    T   G A    K   + +   +KK K +  ++L     L+    
Sbjct: 846 SKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAA 905

Query: 574 GNNRSYLNTTTRQ 586
            + R  + +  ++
Sbjct: 906 ESEREKVMSLVKE 918


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/546 (15%), Positives = 184/546 (33%), Gaps = 76/546 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-----LKEALENTDVTI 68
           ID    G+    +   +I  +F          D      + +      + + L   D+ I
Sbjct: 364 IDFETTGLDTLTD--EIIGISFAIKSKEAFYLDLSGRTNIDKEACKKLVFDTLAKEDIKI 421

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEG 126
           + HN  +E  +++A   +D  +       ++A     P          AL   S      
Sbjct: 422 IGHNLKYEYKMMRA---IDKKMGNMYFDTMVAAYLINPSRGRYNMDDLALSYLSY----- 473

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------ 180
              I         +   +  K       +   EY   D  +T   ++   PL +      
Sbjct: 474 -NTIKY------SDITDNAKKTLLDVELKDVVEYACEDADITFRFYEYFAPLLNTYNLED 526

Query: 181 ----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   +   G  +      +L++       K   ++     G   + +  
Sbjct: 527 LFFNVEMPLISVLADMEFDGVYISTEKMKSLSEEYASLLEKTKAKIYEKA-GEEFNLQSP 585

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L+  LF +  ++    T+T              + ++    R + +            
Sbjct: 586 KQLEYILFEKLKINSTKKTKTGA-------YSTDEEVLRELAQREKIAE----------- 627

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                      L +   S+       VFP     + +R H   +Q +T      +S+P+ 
Sbjct: 628 ---------YMLTYRKYSKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRLSSSEPNL 678

Query: 357 LQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I +       +R+  IA +G  L+ AD + IE R+LA  + +   ++AF+  +D++  
Sbjct: 679 QNIPARGDEGKDIRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRK 738

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  + ++V+   VT   R   K++  ++ Y   A     ++    ++       +K    
Sbjct: 739 TAMKIYSVSKEHVTPSMRNTAKIINFSIIYGKTAF---GLSKELNISRKEADDFIK--GY 793

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +   + FC  + E+         ++ T   R++   +  +S  + + NE  +    T
Sbjct: 794 FSTYSQVKPFCEKVIEDVKAKG----YVRTMLGRIRDLSKTINSSNAVVRNEAERMALNT 849

Query: 532 IENGKA 537
           +  G A
Sbjct: 850 LIQGSA 855



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYH 649
               ++Q  + D++   M+   K          IV+ VHDE+V E  + +   A +++  
Sbjct: 846 ALNTLIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKESDKAMTIMKE 905

Query: 650 LMT 652
           +M 
Sbjct: 906 IME 908


>gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301]
          Length = 877

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/534 (18%), Positives = 172/534 (32%), Gaps = 143/534 (26%)

Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           CK  V V  E  + ++L        L   EQ L ++   +   G  V       +    +
Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267
           +   KL QE+  L  G   +    ++L   LF + GL LE    T+T       VL    
Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P   ++ + R  A   +   +  L + + +DG++                       
Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381
                   H    Q +T      + DP+   I         +R   +   E   L+ +D 
Sbjct: 603 --------HTRYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K +   + 
Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +++  G++       + T                                
Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                          R   + N + +   +  +        KRR                
Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKSYVETLFKRR---------------R 772

Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            LP   S  +   G   R+ +N+                   +Q  + DIL   M+   K
Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814

Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           A    GY   ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866


>gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
 gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
 gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
          Length = 580

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
 gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
          Length = 579

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 135 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 194

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 195 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 253

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 254 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 285

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 286 LQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 345

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 346 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 405

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 406 RQAKAVNFGIPYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 456

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 457 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 479

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 480 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 506

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 507 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 564

Query: 663 LKAE 666
           LK +
Sbjct: 565 LKVD 568


>gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 873

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/535 (15%), Positives = 154/535 (28%), Gaps = 132/535 (24%)

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           L  RF          D    +  +A     E             +      + E  L + 
Sbjct: 426 LTERFSVPSIASGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 481

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  +D             E  ++ QE+  +  G   +    ++L   LF +  
Sbjct: 482 LVVMEKNGIYIDTEKLAETTARFKEELAQVQQEIYDIA-GETFNINSPKQLGVILFEKMN 540

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +  +P   ++   R                         
Sbjct: 541 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------------------- 575

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                   ++               +  R H   +Q++T      +SDP+   I      
Sbjct: 576 ------SVAKLVSTYCEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 629

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R+      G   LV AD + IE R+LA ++G++  +KAF  G+D++  T A     
Sbjct: 630 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 689

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           +   VT ++R+  K +   + Y         ++   G+      + +             
Sbjct: 690 SQEDVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 737

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                              SR  ++   + +  ++  E GK   
Sbjct: 738 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 762

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598
              R+                 LP   S  + R     R+ +NT                
Sbjct: 763 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 792

Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASML 647
              +Q  + DI+   M    +          ++L VHDE+V E  +++      L
Sbjct: 793 ---IQGTAADIIKLAMNQVEQKLEEGNFTSRLLLQVHDELVLEVVNSELEAVEEL 844


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/631 (15%), Positives = 193/631 (30%), Gaps = 140/631 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +     L +  +     +    R  L      D+        L+LA     P+ +    +
Sbjct: 358 EAFMTFLADEKIAKDIFDLKRSRVAL-MWQGFDL--RGVAFDLLLATYIINPTNVSNEFK 414

Query: 115 --ALKLSSQKMEEGKELIARFCKGETHE-CLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             A+      +   +E+  +  K    E     R+  +   A     E     +    + 
Sbjct: 415 KVAMSYDYDDVLYDEEVYGKGAKRAIAEESQIARHSIDIATAVLKLKETALEQLKEQDQ- 473

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
              L      E  L  +   +   G  +D+     + Q +    T L+ E+     G+  
Sbjct: 474 ---LTLFEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHA-GMSF 529

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF +  L +   T+T       VL       P    +   R    +   
Sbjct: 530 NINSPKQLGEVLFDKLSLPVIKKTKTGYSTNADVLEKLSDAHPIIKSIMEYRTLT-KLYS 588

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L +A  SDG++                                   +Q +T    
Sbjct: 589 TYIEGLKKACYSDGKVHTIF-------------------------------NQALTQTGR 617

Query: 349 SITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             + +P+   I         +R   + SE G  ++ AD + IE R+LA ++  +  ++AF
Sbjct: 618 LSSIEPNLQNIPIRLEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAF 677

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + GED++  T    F V+  ++T D R   K +   + Y   A     ++    +     
Sbjct: 678 KEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAF---GLSENLNITQKEA 734

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +        + +  +      E+  + A    +  T                     
Sbjct: 735 KKYID------HYLETYSGINQYMEDTVKDAKFHGYATTLFN------------------ 770

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                              +RR +P +              S ++   R  G  R+ +N 
Sbjct: 771 -------------------RRRYIPEL--------------SQKNYALRQFGE-RTAMNA 796

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                              +Q  + DI+ + M++   A         ++L VHDE++ E 
Sbjct: 797 P------------------IQGTAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEV 838

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           P  + +    ++   M         +PLKA+
Sbjct: 839 PQEELDLMIELVTKTMEDVVK--LQVPLKAD 867


>gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813]
          Length = 880

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/687 (17%), Positives = 217/687 (31%), Gaps = 162/687 (23%)

Query: 9   ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           E  S  D       G   + ED    L    + +      D ++      +L+EAL    
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSDVSLLQEALFKKA 366

Query: 66  VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123
           ++       F+R+ VL   FN+D+P         LA+     +    V    +L +   +
Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           +    +  +  K         R  P          +  K  V     I ++L  ++ +E+
Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLDHLAKKVKVLVDSEANIMQQL-KVNEQEE 474

Query: 184 ELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+ ++Q        +  RG  V     + +          L QE+  L  G   +    
Sbjct: 475 LLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSP 533

Query: 237 EKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           ++L   LF   GL +E    T+T     +   ++L P +  V                  
Sbjct: 534 KQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK---------------- 577

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                        L++   ++             L    + H    Q +T      +SDP
Sbjct: 578 ------------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDP 624

Query: 355 DPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D+
Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684

Query: 409 YVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           + +T  R F +  P  VT + R   K +   + Y              G+        + 
Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYID 741

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
           T                                               R   + N +   
Sbjct: 742 TY--------------------------------------------FERYPGIKNYMETV 757

Query: 528 FEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             +  + G    +  +RR +P +              + R+   R     R+ +N+    
Sbjct: 758 VREAKDKGYVETLFHRRRSLPDI--------------NSRNFNIRQF-AERTAINSP--- 799

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTD 640
                          +Q  + DIL   M+N  +     GY   ++L VHDEIV E P+ +
Sbjct: 800 ---------------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 844

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAE 666
                 L    M S  S    +PL A+
Sbjct: 845 IGAIKELVTKTMESAIS--LSVPLIAD 869


>gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
 gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
          Length = 903

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/499 (16%), Positives = 161/499 (32%), Gaps = 132/499 (26%)

Query: 171 IFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           + ++L+ ++        E  L ++   + + G   D          + V  T+L++++  
Sbjct: 490 LLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADGIKLKEYGDKLAVSITELEKKIYE 549

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281
              G   +    ++L   LF + GL  E  T+T   T   VL       P    +   R 
Sbjct: 550 -AAGEEFNINSPKQLGVILFEKLGLPNEKKTKTGYSTAADVLEKLAPEYPIVADILEYRQ 608

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                +    + L   + SDG+                                H  L+Q
Sbjct: 609 LTKLKSTYA-DGLSGYIASDGK-------------------------------IHTTLNQ 636

Query: 342 IITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            IT      +++P+   I     +   +R   +  EG   V +D + IE RVLA ++G++
Sbjct: 637 TITATGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDE 696

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF+ G+D++ +T +  F+    +VT  QR   K +   + Y   A     +++  G
Sbjct: 697 RMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAF---GLSNDLG 753

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       + +                                            K+ +
Sbjct: 754 ISRKEAQGYIDSYFV-----------------------------------------KYPK 772

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + E    L Q      +NG       R  +  +      N +                  
Sbjct: 773 IKEF---LDQTVLDAKKNGYTKTMFGR--IRPIPELNSSNFMQRQF------------GE 815

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHD 630
           R  +N+                   +Q  + DI+   M+       D      ++L VHD
Sbjct: 816 RVAMNSP------------------IQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHD 857

Query: 631 EIVCETPDTDEFNASMLYH 649
           E++ ET + ++     L  
Sbjct: 858 ELLIETKEAEKDKVIKLLE 876


>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
 gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
          Length = 881

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 146/485 (30%), Gaps = 125/485 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VDV     L +         +    +L      +    ++L
Sbjct: 479 DLEVPLAPVLGRMERAGIAVDVDALEELRKQAQAATDDAESAARNLVDKPELNLGSPKQL 538

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVE 296
           +  LF + G+     T+T         + L       F + +   R +      +  L++
Sbjct: 539 QEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYLLKFRESQKMKSTVEGLIK 598

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A+  DGR+  T                                +Q +       +++P+ 
Sbjct: 599 AVADDGRIHTT-------------------------------FNQTVAATGRLSSTEPNL 627

Query: 357 LQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   +  EG  +L+ AD + IE RV+A ++ +   ++A+  GEDL+ 
Sbjct: 628 QNIPVRTEFGRRIREAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEAYRQGEDLHN 687

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              ++ F V   +VT + R   K M   L Y   A     +A    +             
Sbjct: 688 YVGSKVFGVGIDEVTPELRRRVKAMSYGLAYGLSAF---GLAQQLDIPQREA-------- 736

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                               KK       R   + + LH+  EQ
Sbjct: 737 ------------------------------------KKLMEDYFERFGGVRDYLHKVVEQ 760

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             ++G       RR                 LP   +                  ++ R+
Sbjct: 761 ARKDGFTATMFDRRRY---------------LPELNA----------------DNRIARD 789

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                 L   I Q  + DI+   M+    A         ++L VHDE+V E  D +E   
Sbjct: 790 NAERAALNSPI-QGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVEVADGEEAAI 848

Query: 645 SMLYH 649
             L H
Sbjct: 849 KELLH 853


>gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3]
 gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3]
          Length = 945

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 97/610 (15%), Positives = 176/610 (28%), Gaps = 142/610 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
           L + +    AH+       L     LD+P+        LA    LP   +        + 
Sbjct: 429 LADPNQPKAAHDVKGPMLALTE---LDLPLAGVTSDTALAAYLALPGQRSFDLADLVARY 485

Query: 119 SSQKMEE-----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK--GDVTVTREI 171
             + +       G++L        T +   + ++ +                D  + R  
Sbjct: 486 LHRDLSADPVPGGQQL--------TLDGSGEADQAHADAVRARACLELADALDADLERRS 537

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
              L  L   E  L  +   +   G  VD      L +    E + +  +   +  G   
Sbjct: 538 AATL--LRDIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEI-VGRPF 594

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +    ++L+  LF E GL      +T       +   L  Q+       +   R      
Sbjct: 595 NLGSPKQLQQILFDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRD----- 649

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                                 +R       + P   +    R H   +Q I       +
Sbjct: 650 ---------------------VARLKTVVDSLIPM--IDDIGRIHTTFNQTIAATGRLSS 686

Query: 352 SDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +DP+   I         +R   +   G   L+ AD + IE R++A ++G++  ++AF +G
Sbjct: 687 ADPNLQNIPIRTAEGRQIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSG 746

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+    A +F +  ++V  + R   K M   L Y   A     +A   G+  +     
Sbjct: 747 EDLHTFVAAEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAF---GLAGQLGIAPDEA--- 800

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                    ++      +R   + + L 
Sbjct: 801 -----------------------------------------REHMDAYFARFGGVRDFLR 819

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
              E+  ++G       RR                 LP                  T+  
Sbjct: 820 GVVERARKDGYTETILGRRRY---------------LPDL----------------TSDN 848

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDT 639
              R+      L   I Q  + DI+   M+   +A         ++L VHDE+V E    
Sbjct: 849 SQRRQMAERMALNAPI-QGSAADIIKIAMLGVDRALCAGGYASRLLLQVHDELVLEIAPG 907

Query: 640 DEFNASMLYH 649
           +      L  
Sbjct: 908 EHDAVERLVR 917


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
          Length = 878

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 175/514 (34%), Gaps = 135/514 (26%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++L+ L   E  L  +   +   G  V+      +    +V   +L +E+  L  G   +
Sbjct: 469 QQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELA-GQEFN 527

Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L T LF + GL LE    T+T       VL     + P   ++   R      +
Sbjct: 528 INSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQS 587

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L +A+  DG                               + H    Q +T   
Sbjct: 588 TY-VVGLQDAILEDG-------------------------------KIHTRYVQDLTQTG 615

Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              ++DP+   I         +R   + S E   L+ +D + IE RVLA ++ +Q  ++A
Sbjct: 616 RLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEA 675

Query: 402 FETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F+ G D++ +T  R F +  A+ VT + R   K +   + Y         +++  G+   
Sbjct: 676 FQQGADIHTSTAMRVFGIEKAEYVTPNDRRNAKAVNFGVVYGISDF---GLSNNLGITRK 732

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T                                               R   +
Sbjct: 733 EAKAYIDTYF--------------------------------------------ERFPGI 748

Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            N +     +  + G    I ++RR++P +              + R+   R+    R+ 
Sbjct: 749 KNYMETIVREARDKGYVETIYKRRRELPDI--------------NSRNFNVRNF-AERTA 793

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +N+                   +Q  + DIL   M+N  KA         ++L VHDEIV
Sbjct: 794 INSP------------------IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P  + E   +M+   M S  S    +PL A+
Sbjct: 836 LEVPVAELETVKAMVKETMESAIS--LSVPLIAD 867


>gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
 gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
          Length = 881

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/655 (15%), Positives = 198/655 (30%), Gaps = 165/655 (25%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101
             +          L    V     ++  + TV     N+       + +      ++LA 
Sbjct: 345 TKEETYVSTDVTLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404

Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
               P      L  + E      L   +   GK                 R  P   + +
Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450

Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             F       +    D+T   E   + +  +  E  L  +   +  +G  ++      + 
Sbjct: 451 GQFARKSDALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265
                    L++++ +   G+  +    ++L   LF +  L +   T+T       VL+ 
Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K  +P    +                                 + G ++          
Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380
              LP   + H    Q +T      + DP+   I +      +R   + S EG ++  +D
Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R   K     +
Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y        +     G++       +                                 
Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558
                     + + H       + +    ++  E+G    +  +RR +P ++        
Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R+   R     R+ +NT                   +Q  + DI+   M+   
Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           KA         ++L VHDE++ E P+ +    S L   +M S       +PLK E
Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELVPKVMDSAVH--LDVPLKVE 870


>gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629]
 gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1]
          Length = 903

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/499 (16%), Positives = 160/499 (32%), Gaps = 132/499 (26%)

Query: 171 IFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           + ++L+ +         E  L ++   + + G   D          + V  T+L++++  
Sbjct: 490 LLQKLKEMDMLTLYRDIELPLVFVLYDMENEGIRADGIKLKEYGDKLAVSITELEKKIYE 549

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281
              G   +    ++L   LF + GL  E  T+T   T   VL       P    +   R 
Sbjct: 550 -AAGEEFNINSPKQLGVILFEKLGLPNEKKTKTGYSTAADVLEKLAPEYPIVADILEYRQ 608

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                +    + L   + SDG+                                H  L+Q
Sbjct: 609 LTKLKSTYA-DGLSGYIASDGK-------------------------------IHTTLNQ 636

Query: 342 IITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            IT      +++P+   I     +   +R   +  EG   V +D + IE RVLA ++G++
Sbjct: 637 TITATGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDE 696

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF+ G+D++ +T +  F+    +VT  QR   K +   + Y   A     +++  G
Sbjct: 697 RMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAF---GLSNDLG 753

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       + +                                            K+ +
Sbjct: 754 ISRKEAQGYIDSYFV-----------------------------------------KYPK 772

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + E    L Q      +NG       R  +  +      N +                  
Sbjct: 773 IKEF---LDQTVLDAKKNGYTKTMFGR--IRPIPELNSSNFMQRQF------------GE 815

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHD 630
           R  +N+                   +Q  + DI+   M+       D      ++L VHD
Sbjct: 816 RVAMNSP------------------IQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHD 857

Query: 631 EIVCETPDTDEFNASMLYH 649
           E++ ET + ++     L  
Sbjct: 858 ELLIETKEAEKDKVIKLLE 876


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 152/491 (30%), Gaps = 127/491 (25%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            L      E+ L  +   +   G  VD A    ++         L+  + +   G   + 
Sbjct: 494 LLPLYRDVERPLVPVLCEMERAGILVDRAAMEGMSAEFGRTMQDLEARIHA-AAGHPFNI 552

Query: 234 RCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
               +L   LF E  L +    +T   T Q VL    +       V  +R  A       
Sbjct: 553 ASTRELAQVLFTELALPVLKRLKTGPSTDQDVLEKLAEQHELPRLVLEHRALA------- 605

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                                   +         P    PR  R H    Q         
Sbjct: 606 ------------------------KLKGTYVDALPQLVDPRDGRIHTTFHQAGAATGRLS 641

Query: 351 TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +SDP+   I     +S  +R+  +A  G +L+ AD + IE R+LA  + +   L+AF   
Sbjct: 642 SSDPNLQNIPVRTELSRRIRAAFVAPPGWRLLSADYSQIELRILAHYSDDPALLEAFRLR 701

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T A +F VA  +VT D R I KV+   + Y   A    +      L       +
Sbjct: 702 EDVHTRTAAETFGVATGEVTSDMRRIAKVLNFGIAYGLSAFGLSQ---RLDLPGAEAQGI 758

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +                                             +  +R + +   + 
Sbjct: 759 ID--------------------------------------------RYFARYAGVRRYVE 774

Query: 526 QAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
           +A E     G++  +  + R +P +  +          P+ R+         R+ +NT  
Sbjct: 775 KAVEDARATGESRTLFGRARAMPEIAARN---------PALRNAA------ERTAINTP- 818

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPD 638
                            +Q  + DI+   M+    A         ++L VHDE+V E P+
Sbjct: 819 -----------------IQGTAADIVKVAMIRVHDALAGDARRARLLLQVHDELVLEVPE 861

Query: 639 TDEFNASMLYH 649
            +      L  
Sbjct: 862 DELAPVEALVR 872


>gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
 gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
          Length = 886

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 104/640 (16%), Positives = 207/640 (32%), Gaps = 161/640 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           L++ LE+  +     +       L     LDI        ++LA        ++      
Sbjct: 367 LRQMLEDKTIKKNVFDIKRTYVGLHR---LDIKAEGLDYDMLLASYLVNNENNSNDLGEI 423

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A       ++   E+  +  K                +    F         + +     
Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAV------------PDDNDFFEHLAAKVAVIEKLKTPL 471

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           LE L   EQ+  Y         +   +   G  V+ ++ + L     V+  +L+ ++   
Sbjct: 472 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282
             G   +    ++L   LF + GL     T+T     +   ++L   +P   ++ + R  
Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A +     +  L++ +  DGR+                               H    Q 
Sbjct: 591 A-KIQNTYVKGLLDCIQPDGRI-------------------------------HTRYLQT 618

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395
           +T      + DP+   I         +R   + S  +G      D + +E RVLA ++G+
Sbjct: 619 LTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +AF++G D++  T  + F++  P +VT   R   K +   + Y         ++  
Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       ++                   E +P                        
Sbjct: 735 LGISRKQAKTFIEN----------------YFEQYP------------------------ 754

Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
               ++ N + +A ++  ENG A  I  +RR +P ++ K           + RS      
Sbjct: 755 ----QIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
              R+ +N+                   +Q  + DI+   M+N  K          +VL 
Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           VHDE++ + P  +      +   +M S       +PL A+
Sbjct: 838 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 875


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/608 (15%), Positives = 185/608 (30%), Gaps = 131/608 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVG 113
           ++  LE+ D+  + +    +   LK      I +      + +A     +   ++     
Sbjct: 358 IRTILEDEDIEKIGYEMKADYVALKPY---GIDLRNMAFDIAIAEYVIDSKTSTSYDIDS 414

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC---KGDVTVTRE 170
            + K   + +   ++L+ +  K   +  +       +                 +    +
Sbjct: 415 ISSKYIYKTIMSKEDLLGKGAKALDYRQVDLEKLDQYVSGMLSTIIGSYPKMKKIIDEDQ 474

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +          E  L  +   +   G CVD  +   L +  D    K ++ +  L  G  
Sbjct: 475 LSMLFY---DVEMPLVEVLAEMEYAGICVDRDILSNLAKDFDEIIDKTEKNIHELA-GQD 530

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L   LF + GL +   T+T         +KL                     
Sbjct: 531 FNVNSPKQLGHILFEKLGLPVIKKTKTGYSTNAEVLEKL--------------------- 569

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                   +    +    ++    +               +  R H   +Q IT      
Sbjct: 570 -------RDKHEIINMITEYRSVVKLKSTYVDGIEALVNAKDGRIHSSFNQTITTTGRIS 622

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           ++DP+   I         +R   IA +   LV AD + +E RVLA M+ +   ++AF +G
Sbjct: 623 STDPNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFNSG 682

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T ++ FNV   QVT + R+  K +   + Y         +A    ++       
Sbjct: 683 EDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGIIYGKSDF---GLAQDLNISQKKAKEY 739

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +++      +   E    +M     E                                  
Sbjct: 740 IES-----YFNKYETIKAFMDHIVSEAE-------------------------------E 763

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           + +  TI N       +RR +P +   K  N +                  R+ +N    
Sbjct: 764 KGYSTTIFN-------RRRYIPEI---KSSNFV------------EKNRGKRAAMNAP-- 799

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+N             ++L VHDE++ E    
Sbjct: 800 ----------------IQGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELIVEATAD 843

Query: 640 DEFNASML 647
           +     +L
Sbjct: 844 ELTQVEVL 851


>gi|332638560|ref|ZP_08417423.1| DNA polymerase I [Weissella cibaria KACC 11862]
          Length = 904

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 104/635 (16%), Positives = 199/635 (31%), Gaps = 136/635 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           +   L++  V     N+      L+    L +P       L+L         +       
Sbjct: 384 VNRILQDATVKKNVFNAKGTIVALRR-LGLTLP--NVAFDLLLVAYLLDANDNNNDMGAL 440

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +     +   +E+  +  K    E   D +   H     +  +Y K  +       ++
Sbjct: 441 AHENGYYAVRTDEEVYGKGAKFAIPEA--DEDLFEHLGRKAMAIQYLKDPLMAKLTEHEQ 498

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            +     E  L Y+   +   G  VD      +   +     +L+Q +     G   + +
Sbjct: 499 TQLYDDIELPLTYVLADMEATGITVDANTLLEMRSKLTERLAELEQTIYQQA-GHEFNVQ 557

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLN 292
             ++L   LF E G      T+T     +   +     P    +   R  A   +     
Sbjct: 558 SPKQLGVVLFEEMGYTPIKKTKTGYSTSVEVLEQMGDVPLVASILAYRQIAKIQST--YV 615

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             +  +     + G+                         S+ H    Q +T      + 
Sbjct: 616 EGLLRV-----IHGS------------------------DSKVHTRYLQTLTQTGRLSSV 646

Query: 353 DPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           DP+   I         +R   +  E G +++ AD + IE RVLA + G++   +AF  GE
Sbjct: 647 DPNLQNIPVRIEEGRRIRKAFVPREKGWRILSADYSQIELRVLAHITGDKHLQEAFINGE 706

Query: 407 DLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           D++  T  R F + P + V  + R   K +   + Y         +A   G++      +
Sbjct: 707 DIHAATARRIFGIGPDETVDGNIRRQAKAVNFGIVYGISDF---GLAKNIGVSRKQAKQI 763

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           + T                                           +++  V     E+ 
Sbjct: 764 IDTYF-----------------------------------------EQYPGVKTWSEEII 782

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
            A  +  +     IA +RR +P +  K           + RS         R+ +N+   
Sbjct: 783 AAARE--QGYVETIAHRRRYLPDIKAKNF---------NLRSFA------ERTAMNSP-- 823

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+N  KA         ++L VHDE++ E P++
Sbjct: 824 ----------------IQGSAADIIKIAMINMEKALRDAGLQAKMLLQVHDELIFEAPES 867

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +      L   +M S       +PL    +E + +
Sbjct: 868 ELPILHELVPRVMDSAMQ--LDVPLIVASHEGETW 900


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 104/615 (16%), Positives = 194/615 (31%), Gaps = 129/615 (20%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+  EN  +  V+HN     TV K    + I          +A        + +     
Sbjct: 379 LKDIFENDKIEKVSHNIKVPYTVFKK---MGINFTSVKFDTEIAAYL-----IDSSRGEY 430

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L+S   +  K ++     GE  E     N         +F    K        + + L 
Sbjct: 431 GLNSIIQDYLKIMLQ----GEEDEIRVKENSLLKD----VFETLNKQ--IKELNMEELLY 480

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            +   EQ L  +   +   G+ VD      L +   +E  KL +++  L      +    
Sbjct: 481 EV---EQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDIYGLA-EEEFNINSP 536

Query: 237 EKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L +   T+T       VL       P   ++   R    +     +  
Sbjct: 537 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLEQLLDKHPIIEKITYYRQFT-KLYSTYIEG 595

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   ++ DG++  +      + TGR S      QN+P                       
Sbjct: 596 LKAVIDKDGKIHSSFNQT-VTTTGRLSSTEPNLQNIPIKYE------------------- 635

Query: 354 PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                 +   +R   +   E   ++ AD + IE RVLA +A ++  + AF    D++  T
Sbjct: 636 ------MGREIRKVFVPEDENSIILSADYSQIELRVLAHIADDENLIDAFLNHSDIHTKT 689

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +  F V   QVTK QR+  K +   + Y  G  +    A    ++     + + T    
Sbjct: 690 ASEVFKVPIDQVTKLQRSNAKAVNFGIVYGIGDFSL---AKDLKISRKEAKNYIDT---- 742

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
             + +     +   +N  + A ++L++ T                               
Sbjct: 743 --YFERYPGVKRYMDNVIKQAEDNLYVTT------------------------------- 769

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                 I  +RR +P +   K                       R  +NT  +       
Sbjct: 770 ------IMNRRRFIPEIKNSKK---------------MVKAFGERLAMNTPIQ------- 801

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
             G   + I  ++   +    ++ +      ++L VHDE++      +      L    M
Sbjct: 802 --GSAADIIKMSM---VNVYNILKSKNLKSKVILQVHDELILNVYKDELEEVKELVKNQM 856

Query: 652 TSNPSWAKGLPLKAE 666
                    +PL+ +
Sbjct: 857 EDVMK--LRVPLEVD 869


>gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
 gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
          Length = 994

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 105/647 (16%), Positives = 199/647 (30%), Gaps = 145/647 (22%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D +  P +   LK  LE+  V  V  N  ++  V+       I +     T++++     
Sbjct: 458 DQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMAR---RGIRVAPIDDTMLISYVL-- 512

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA---WRLFGEYCK 162
                       L    M+E   L     +    + +    K          +    Y  
Sbjct: 513 ---------EGGLHGHGMDELSRL-HLGHEPIPFKSVAGTGKAQKSFKHVELKPATCYAA 562

Query: 163 GDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  +++ L+P  + E+           +  +   +  RG  VD A    L+    
Sbjct: 563 EDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPARLRRLSSEFG 622

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
           +   +L+ +   +  G   +     ++   LF E  L     T +    T    L    +
Sbjct: 623 LRMAELEAQAHEIA-GRPFNVGSPRQIGEILFGELNLPGGKKTASGQWETGAATLEGLAE 681

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                  + + R                                 S+             
Sbjct: 682 THALPRVLLDWRQL-------------------------------SKLKGTYTDALVAAM 710

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383
            P+  R H              +SDP+   I         +R   IA +G  L+ AD + 
Sbjct: 711 DPQTDRVHTSYQLAAATTGRLASSDPNLQNIPIRTETGRQIRQAFIAKDGHVLISADYSQ 770

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA +       +AF+ G D++  T +  F V  A +  + R   K +   + Y  
Sbjct: 771 IELRLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVADMDPETRRRAKAINFGIVYGI 830

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A     +A+  G++                  +A  + +   E  P             
Sbjct: 831 SAF---GLANQLGIDQG----------------EAGAYIKTYFERFP------------- 858

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
             ++       + V  L                + +  ++  +P +              
Sbjct: 859 -GIRTYMDATRAEVRSL-------------GFVSTVFGRKIHIPAI-------------- 890

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
           + +S   R  G  R+ +N   +         G   + I +A+ R     G + A      
Sbjct: 891 ASKSGAERQFGE-RAAINAPIQ---------GAAADIIRRAMIR---MPGALEAAGLETK 937

Query: 624 IVLTVHDEIVCETPDTDEFNAS-MLYHLM--TSNPSWAKGLPLKAEG 667
           ++L VHDE+V E P+ +   A  ++  +M   + P+ A  +PL  + 
Sbjct: 938 MLLQVHDELVFEAPEAEVEAAIPLIKRIMEGAAEPAVALSVPLVVDA 984


>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
 gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
          Length = 899

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/504 (18%), Positives = 163/504 (32%), Gaps = 129/504 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  + +L   +   G  VD+ +   L Q    ++ +   E      G   +    +
Sbjct: 496 LTDMELPVQHLLAEMETAGIAVDLTMLGGL-QRHFADQIRDAAEAAYAVIGKQINLGSPK 554

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTL 294
           +L+  LF E  +     T+T       + + L  +    F   + A R      + ++ L
Sbjct: 555 QLQVVLFDELRMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGL 614

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           + ++  DGR+  T                                +Q I       +++P
Sbjct: 615 LNSVADDGRIHTT-------------------------------FNQTIAATGRLSSTEP 643

Query: 355 DPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   +  +G  +L+ AD + IE R++A ++ ++  ++AF TGEDL
Sbjct: 644 NLQNIPIRTDAGRQIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDL 703

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    +R+F V   +VT + R   K M   L Y   A         +             
Sbjct: 704 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSSQLKIS------------- 750

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                              E  K    Q  SR   + + L    
Sbjct: 751 ----------------------------------TEDAKVQMDQYFSRFGGVRDYLMAVV 776

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           EQ  ++G       RR                 LP                L+++ RQ  
Sbjct: 777 EQARKDGYTSTVLGRR---------------RHLPE---------------LDSSNRQ-V 805

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642
           RE      L   I Q  + DI+   M+   KA         ++L VHDE++ E    +  
Sbjct: 806 REAAERAALNAPI-QGSAADIIKVAMIEVDKALKEHALKSRMLLQVHDELLFEVAAGERE 864

Query: 643 NASMLYH-LMTSNPSWAKGLPLKA 665
               L    M S  ++   +PL+ 
Sbjct: 865 QIEALVRDKMGS--AYPLDVPLEV 886


>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 906

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/641 (15%), Positives = 194/641 (30%), Gaps = 157/641 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+  +  V  N  ++  +L    N  I +       ++         L +V  
Sbjct: 384 DQLKLILEDVSIGKVGQNLKYDAHILA---NYQIDLQGISDDTMVKSYC-----LNSVAT 435

Query: 115 ALKLSS-------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
              +          K     ++  +  K  T   +                 Y    V V
Sbjct: 436 RHNIDDLSEYYLNHKTIHFDDIAGKGKKQITFNQV----------DLETAFPYACEYVIV 485

Query: 168 TREI----------FKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T  +          + +L  L    E  L  +   +   G  +D+    T    +  +  
Sbjct: 486 TDLLNHVLDEEIVQYPKLVKLYQNLELPLIKVLLCMERNGIELDMNELSTQQIDIVQQMK 545

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            +  ++  L  G + +    ++++  LF   GL L  L + T +   S+N++        
Sbjct: 546 DIQAQVFELA-GDIFNLESPKQIQQILFEPEGLGLTPL-KKTPKGAPSTNEEALKLLDHP 603

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +                            L +   ++         P Q      R H
Sbjct: 604 LVDL--------------------------ILSYRTLTKLNSTYLEALPKQIDLNTHRLH 637

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
               Q +T      +S+P+   I         +R   +A +   ++ AD + IE R++A 
Sbjct: 638 TSYHQAVTVTGRLSSSNPNLQNIPIRSKQGARIRGAFVAGKDNVIIAADYSQIELRIMAQ 697

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++  L AF   +D++  T +  FN+   +VTK  R   K +   L Y   A      
Sbjct: 698 LSQDKNLLDAFNHDKDVHSVTASTMFNMPINEVTKKHRRRSKAINFGLIYGMSAF----- 752

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               GL       +++     + + D         ++  E A                  
Sbjct: 753 ----GLTKQIDVSIIEAKQYIDTYFDNYPGVLHYMDSIKESA------------------ 790

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                  ++W  +              +  +R  +P +  K             + L   
Sbjct: 791 -------KVWGYVE------------TVMGRRLYLPQINSK------------NKILQQH 819

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625
            +   R+ +N                     Q  S DI+ + M++             ++
Sbjct: 820 AL---RTAINAPM------------------QGSSADIIKKSMLDIHAWIGENNPDIRMI 858

Query: 626 LTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKA 665
           + VHDE+V E  ++     A  +  LM +   +   +PLK 
Sbjct: 859 MQVHDELVFEVSESKADEFAHKIQGLMANV--YLLDIPLKV 897


>gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
 gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
          Length = 877

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 431 GVKKAIPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    ++   KL QE+  L  G   +    ++L   LF +  L LE   
Sbjct: 491 GITVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLALPLEYTK 549

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIR 637

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 638 KAFVPEWENSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 857

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 858 Q--LSVPLIAD 866


>gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
 gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/661 (15%), Positives = 206/661 (31%), Gaps = 141/661 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F F +D     + D       P+++K  LEN     + +++     V    
Sbjct: 328 YLQD-TILKFGF-YDGVDHVVIDSDQLKEYPELIKW-LENETTEKIVYDAKKTYVVAHR- 383

Query: 84  FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             LDI I   +  ++LA     P   +  V   +   +Q     ++ I+ + KG+     
Sbjct: 384 --LDIDIKNIVFDVMLASYIIDPSRTIDDVNSVVSNYNQNF--VQDDISIYGKGKKRHVP 439

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            D     H  +       CK ++    E  ++++ L + E  L  +   + + G   D+ 
Sbjct: 440 EDTILNKHIASITEAIYACKREMVAELESHQQIDLLLNLELPLARILSEMEETGIYTDIN 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261
               +   +  +   L   +     G   +    ++L   LF    L +   T+T     
Sbjct: 500 DLRQMQSEIQGKLDLLISNIHE-AAGEEFNINSPKQLGVVLFETLELPVIKKTKTGYSTA 558

Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +   P    +   R                                 S+    
Sbjct: 559 VDVLEQLQGQHPIIDYILEYRQL-------------------------------SKLQST 587

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEG 373
                    + + +R H   +Q +       + DP+   I         +R      S  
Sbjct: 588 YVEGLQK-VISKDNRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAFKPTSND 646

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             ++ AD + IE RVLA +  ++   +AF   +D++  T  + F+V   +V    R   K
Sbjct: 647 SVILSADYSQIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMRRQAK 706

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y        +   +  +        +       ++  +    +    +  + A
Sbjct: 707 AVNFGIVYGISDYGLSQ---SLNITRKKAKAFID------DYLASFPGVKQYMSDIVKDA 757

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             D ++ T                                        +RR +P +    
Sbjct: 758 KADGYVETLL-------------------------------------HRRRYIPDI---- 776

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                     + R+   R     R+ +NT                   +Q  + DI+   
Sbjct: 777 ----------NSRNFNLRGF-AERTAMNTP------------------IQGSAADIIKLA 807

Query: 614 MMNATKA------GYDIVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           M+   +          ++L VHDE++ E P  + ++F+   +  +M         +PLK 
Sbjct: 808 MVEFDRQIKQTSYHAQLLLQVHDELIFEVPANEVEDFSL-FVEEIMEHALQ--LDVPLKV 864

Query: 666 E 666
           +
Sbjct: 865 D 865


>gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 881

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 97/652 (14%), Positives = 197/652 (30%), Gaps = 159/652 (24%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK--------ACFNLDIPIHRWICTLVL 99
             +          L   +V     +S  + TV              L +P       ++L
Sbjct: 345 TKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNIVAAHRLGLHLP--DIAFDVLL 402

Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           A     P   +      A       +   +++  +  K         R  P  +  +  F
Sbjct: 403 ASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAK---------RQVPEDKLLFEQF 453

Query: 158 GE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  +    D+T      ++ +  +  E  L  +   +  +G  ++      +    
Sbjct: 454 ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEF 513

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKK 268
                 L++++     G+  +    ++L   LF +  L +   T+T       VL+  K 
Sbjct: 514 SQSIKVLEEKIYGEA-GVKFNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKS 572

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
            +P    +                                 + G ++             
Sbjct: 573 ASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLLKAQ 601

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVADLAG 383
           +P   + H    Q +T      + DP+   I +      +R   + S    ++  +D + 
Sbjct: 602 MP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHPDWQIFSSDYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442
           IE RVL+ ++G++   +AF+ G D++  T  + F +  P +VT D R   K     + Y 
Sbjct: 661 IELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG 720

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                   +A   G++       +                                    
Sbjct: 721 ISDY---GLAQNIGISRKQAKAFIDGYF-------------------------------- 745

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561
                + + + H       + +    ++  E+G    +  +RR +P ++           
Sbjct: 746 -----EQYPKVH-------DYMENMVKKAREDGYVETLFHRRRYLPQIHS---------- 783

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
               R+   R     R+ +NT                   +Q  + DI+   M+   KA 
Sbjct: 784 ----RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQKAL 820

Query: 622 ------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                   ++L VHDE++ E P  +      L   +M S  S A  +PLK E
Sbjct: 821 DEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLA--VPLKVE 870


>gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
 gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
          Length = 881

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/655 (15%), Positives = 198/655 (30%), Gaps = 165/655 (25%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101
             +          L    V     ++  + TV     N+       + +      ++LA 
Sbjct: 345 TKEETYVSTDITLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404

Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
               P      L  + E      L   +   GK                 R  P   + +
Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450

Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             F       +    D+T   E   + +  +  E  L  +   +  +G  ++      + 
Sbjct: 451 GQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265
                    L++++ +   G+  +    ++L   LF +  L +   T+T       VL+ 
Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K  +P    +                                 + G ++          
Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380
              LP   + H    Q +T      + DP+   I +      +R   + S EG ++  +D
Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R   K     +
Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y        +     G++       +                                 
Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558
                     + + H       + +    ++  E+G    +  +RR +P ++        
Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R+   R     R+ +NT                   +Q  + DI+   M+   
Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           KA         ++L VHDE++ E P+ +    S L   +M S       +PLK E
Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870


>gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346]
          Length = 882

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++      L         I    +    L  +N   + ++ V 
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +     + + +E   +  +  K         +  P   E   +F  +    +   + +  
Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465

Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +L   L+ K         E  L  +   +   G  VD      +         ++++++ 
Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF + GL +   T+T       VL   K+  P    +   R
Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A   +   +  L++ +  D ++                               H    
Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R   +  E    +  +D + IE RVLA ++ 
Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y        +   
Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        + T                                           +K
Sbjct: 730 NLGITREQAQQYIDTYF-----------------------------------------EK 748

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   E+ +  +   +     +  +RR +  +              + R+   R  
Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DIL   M+         K    ++L 
Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMAHRLKEEKLQATMLLQ 833

Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652
           VHDE+V E P+++    + L   +M 
Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859


>gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76]
 gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017]
 gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027]
 gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141]
 gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244]
 gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012]
 gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031]
 gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043]
 gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312]
 gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341]
 gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
 gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
 gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467]
          Length = 882

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++      L         I    +    L  +N   + ++ V 
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +     + + +E   +  +  K         +  P   E   +F  +    +   + +  
Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465

Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +L   L+ K         E  L  +   +   G  VD      +         ++++++ 
Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF + GL +   T+T       VL   K+  P    +   R
Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A   +   +  L++ +  D ++                               H    
Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R   +  E    +  +D + IE RVLA ++ 
Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y        +   
Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        + T                                           +K
Sbjct: 730 NLGITRKQAQQYIDTYF-----------------------------------------EK 748

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   E+ +  +   +     +  +RR +  +              + R+   R  
Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DIL   M+         K    ++L 
Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833

Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652
           VHDE+V E P+++    + L   +M 
Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859


>gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
 gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
          Length = 865

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/520 (16%), Positives = 158/520 (30%), Gaps = 132/520 (25%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V    +  ++ E   + E+ L  +   +   G  VDV     +   +      L+Q +  
Sbjct: 451 VKEELKANQQFELYETLERPLSGVLAEMEWTGIRVDVGTLQEMQHDLAGRLHDLEQLIYG 510

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281
              G   +    ++L   LF +  L     T+T   T   VL   + L P    +   R 
Sbjct: 511 -EVGEEFNINSPKQLGVILFEKMELPAFKKTKTGYSTAADVLEKLRPLHPVIDHIMLYR- 568

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L + +  D                                + H    Q
Sbjct: 569 ELQKLQSTYVEGLQKVIKED-------------------------------GKIHTRFAQ 597

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
            I       + +P+   I         +R   + SE G  L  AD + IE RV+A M+ +
Sbjct: 598 TIAQTGRLSSVNPNLQNIPVRIEEGRKIRKAFVPSEPGWSLYAADYSQIELRVMAHMSED 657

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF    D++  T +  F VAP  VT + R   K +   + Y        +     
Sbjct: 658 KTLVQAFLDDADIHTQTASSVFGVAPNDVTGNMRRQAKAVNFGIIYGISDYGLSQ---NL 714

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            ++       +                                             +   
Sbjct: 715 NISRKEAQDFIDRYF-----------------------------------------ELFP 733

Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           ++      +  A E+   NG    +  +RR++P +  K           + R        
Sbjct: 734 QIKLF---MDAAIEKARMNGFVETLMNRRRNIPDINSKNF---------NLRGFA----- 776

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
             R+ +NT                   +Q  + DI+ + M++   A         ++L V
Sbjct: 777 -ERTAINTP------------------IQGSAADIIKKAMLDVHAALEQSPLRARLLLQV 817

Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG 667
           HDE++ E PD +      L    M         +PL+ +G
Sbjct: 818 HDELIFEAPDEELDALKTLVKQAMEQTVQ--LSVPLRVDG 855


>gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000]
          Length = 882

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++      L         I    +    L  +N   + ++ V 
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +     + + +E   +  +  K         +  P   E   +F  +    +   + +  
Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465

Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +L   L+ K         E  L  +   +   G  VD      +         ++++++ 
Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF + GL +   T+T       VL   K+  P    +   R
Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A   +   +  L++ +  D ++                               H    
Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R   +  E    +  +D + IE RVLA ++ 
Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y        +   
Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        + T                                           +K
Sbjct: 730 NLGITRKQAQQYIDTYF-----------------------------------------EK 748

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   E+ +  +   +     +  +RR +  +              + R+   R  
Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DIL   M+         K    ++L 
Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833

Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652
           VHDE+V E P+++    + L   +M 
Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 97/631 (15%), Positives = 192/631 (30%), Gaps = 140/631 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +     L +  +     +    R  L      D+        L+LA     P+ +    +
Sbjct: 358 EAFMTFLADEKIAKDIFDLKRSRVAL-MWQGFDL--RGVAFDLLLATYIINPTNVSNEFK 414

Query: 115 --ALKLSSQKMEEGKELIARFCKGETHE-CLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             A+      +   +E+  +  K    E     R+  +   A     E     +    + 
Sbjct: 415 KVAMSYDYDDVLYDEEVYGKGAKRAIAEESQIARHSIDIATAVLKLKETALEQLKEQDQ- 473

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
              L      E  L  +   +   G  +D+     + Q +    T L+ E+     G+  
Sbjct: 474 ---LTLYEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHA-GMSF 529

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF +  L +   T+T       VL       P    +   R    +   
Sbjct: 530 NINSPKQLGEVLFDKLSLPVIKKTKTGYSTNADVLEKLSDAHPIIKSIMEYRTLT-KLYS 588

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L +A  SDG++                                   +Q +T    
Sbjct: 589 TYIEGLKKACYSDGKVHTIF-------------------------------NQALTQTGR 617

Query: 349 SITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             + +P+   I         +R   + SE G  ++ AD + IE R+LA ++  +  ++AF
Sbjct: 618 LSSIEPNLQNIPIRLEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAF 677

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + GED++  T    F V+  ++T D R   K +   + Y   A     ++    +     
Sbjct: 678 KEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAF---GLSENLNITQKEA 734

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +        +    +      E+  + A    +  T                     
Sbjct: 735 KKYID------HYLKTYSGINQYMEDTVKDAKFHGYATTLFN------------------ 770

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                              +RR +P +              S ++   R  G  R+ +N 
Sbjct: 771 -------------------RRRYIPEL--------------SQKNYALRQFGE-RTAMNA 796

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                              +Q  + DI+ + M++   A         ++L VHDE++ E 
Sbjct: 797 P------------------IQGTAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEV 838

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           P  + +    ++   M         +PLKA+
Sbjct: 839 PQEELDLMIELVTKTMEDVVK--LQVPLKAD 867


>gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W]
 gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II]
          Length = 881

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/655 (15%), Positives = 198/655 (30%), Gaps = 165/655 (25%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101
             +          L    V     ++  + TV     N+       + +      ++LA 
Sbjct: 345 TKEETYVSTDITLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404

Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
               P      L  + E      L   +   GK                 R  P   + +
Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450

Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             F       +    D+T   E   + +  +  E  L  +   +  +G  ++      + 
Sbjct: 451 GQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265
                    L++++ +   G+  +    ++L   LF +  L +   T+T       VL+ 
Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K  +P    +                                 + G ++          
Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380
              LP   + H    Q +T      + DP+   I +      +R   + S EG ++  +D
Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R   K     +
Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y        +     G++       +                                 
Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558
                     + + H       + +    ++  E+G    +  +RR +P ++        
Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R+   R     R+ +NT                   +Q  + DI+   M+   
Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           KA         ++L VHDE++ E P+ +    S L   +M S       +PLK E
Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870


>gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form).
 gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form)
          Length = 580

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNYGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
 gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
          Length = 239

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 117/289 (40%), Gaps = 63/289 (21%)

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TT 455
           +K F+   D+Y  + +  F+V   +  V    R  GK+ ELALGY G   A   + +  T
Sbjct: 1   MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIGALDT 60

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL+ +                                             +  +WR  + 
Sbjct: 61  GLSEDELQ-----------------------------------------PLVDSWRASNP 79

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV 573
            + + W ++ +  +  I+   A       +   +        L ++LPSGR L Y    +
Sbjct: 80  NIVQFWWDVDRCVKTAIKQRTA------TETHGIRFVYQNGILFIVLPSGRRLCYVKPKI 133

Query: 574 GNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
           G N+    + T       ++  R  +YG K  ENIVQA+SRDIL   M   +     IV 
Sbjct: 134 GENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMRTLSH--CFIVG 191

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            VHDE++ ETP   +  A  +   +   P W  GL L+A+GYE+  Y+K
Sbjct: 192 HVHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238


>gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
 gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
          Length = 580

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNYGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol]
 gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol]
          Length = 882

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++      L         I    +    L  +N   + ++ V 
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +     + + +E   +  +  K         +  P   E   +F  +    +   + +  
Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465

Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +L   L+ K         E  L  +   +   G  VD      +         ++++++ 
Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF + GL +   T+T       VL   K+  P    +   R
Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A   +   +  L++ +  D ++                               H    
Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R   +  E    +  +D + IE RVLA ++ 
Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y        +   
Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        + T                                           +K
Sbjct: 730 NLGITRKQAQQYIDTYF-----------------------------------------EK 748

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   E+ +  +   +     +  +RR +  +              + R+   R  
Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DIL   M+         K    ++L 
Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833

Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652
           VHDE+V E P+++    + L   +M 
Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859


>gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna (Open Form)
          Length = 580

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNYGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08]
          Length = 920

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/621 (16%), Positives = 181/621 (29%), Gaps = 144/621 (23%)

Query: 51  PVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP- 106
            + P+  K     L + +     H++      ++A       +    C   LA     P 
Sbjct: 394 ELDPEDEKSFAAWLADNECPKAMHSAK---GPVEALAGRGWEVAGLTCDTELASYLLHPD 450

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GD 164
             + K         +  + EG+E         + + + D    +  E+        K  D
Sbjct: 451 RRSHKFDDAVRTHLNLTLGEGEE--------NSDQAMLDFGNDSSAESMERAVAVTKLAD 502

Query: 165 V-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           V     E     E L   E  +     ++   G  VD  +   L    D   T+      
Sbjct: 503 VMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAW 562

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G   +    ++L+  LF +  +     T++       +   L  +    F   +  
Sbjct: 563 E-AAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLE 621

Query: 284 SRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            R A+     ++ L++ +  DGR+  T                                 
Sbjct: 622 HRDAIKLRQTVDGLLKEIRDDGRVHTT-------------------------------YM 650

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
           Q I       + DP+   I         +R   +  EG + L+ AD + IE R++A ++G
Sbjct: 651 QTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSG 710

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF +G+D +  T +  F VAP  V+  QR+  K M   L Y   A         
Sbjct: 711 DQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKV 770

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           +                                                   K+      
Sbjct: 771 S-----------------------------------------------VGEAKELMAGYF 783

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR  ++   L +  +Q    G       RR                 LP           
Sbjct: 784 SRFGKVHEYLEEVVDQARRQGYTETLLGRRRY---------------LPDL--------- 819

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTV 628
                  T+T +  R+      L   I Q  + D++   M+   +          ++L V
Sbjct: 820 -------TSTNRQRRDMAERAALNAPI-QGSAADLIKLAMVATDQKLAEAGLTSRVLLQV 871

Query: 629 HDEIVCETPDTDEFNASMLYH 649
           HDE++ E    +E     +  
Sbjct: 872 HDELILEVTKDEEEKVRQIVT 892


>gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 880

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 124/686 (18%), Positives = 213/686 (31%), Gaps = 160/686 (23%)

Query: 9   ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           E  S  D       G   + ED    L    + +      D ++      +L+EAL    
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSNVSLLQEALFKKA 366

Query: 66  VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123
           ++       F+R+ VL   FN+D+P         LA+     +    V    +L +   +
Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EP 177
           +    +  +  K         R  P          +  K  V     I ++L      E 
Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +  RG  V     + +          L QE+  L  G   +    +
Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSPK 534

Query: 238 KLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           +L   LF   GL +E    T+T     +   ++L P +  V                   
Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK----------------- 577

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                       L++   ++             L    + H    Q +T      +SDP+
Sbjct: 578 -----------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPN 625

Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D++
Sbjct: 626 LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIH 685

Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +T  R F +  P  VT + R   K +   + Y              G+        + T
Sbjct: 686 TSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYIDT 742

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                          R   + N +    
Sbjct: 743 Y--------------------------------------------FERYPGIKNYMETVV 758

Query: 529 EQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            +  + G    +  +RR +P +              + R+   R     R+ +N+     
Sbjct: 759 REAKDKGYVETLFHRRRSLPDI--------------NSRNFNIRQF-AERTAINSP---- 799

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDE 641
                         +Q  + DIL   M+N  +     GY   ++L VHDEIV E P+ + 
Sbjct: 800 --------------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEI 845

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAE 666
                L    M S  S    +PL A+
Sbjct: 846 GAIRELVTKTMESAIS--LSVPLIAD 869


>gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG]
 gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG]
 gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137]
 gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62]
 gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF]
          Length = 882

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++      L         I    +    L  +N   + ++ V 
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +     + + +E   +  +  K         +  P   E   +F  +    +   + +  
Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465

Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +L   L+ K         E  L  +   +   G  VD      +         ++++++ 
Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF + GL +   T+T       VL   K+  P    +   R
Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A   +   +  L++ +  D ++                               H    
Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R   +  E    +  +D + IE RVLA ++ 
Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y        +   
Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        + T                                           +K
Sbjct: 730 NLGITRKQAQQYIDTYF-----------------------------------------EK 748

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   E+ +  +   +     +  +RR +  +              + R+   R  
Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DIL   M+         K    ++L 
Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833

Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652
           VHDE+V E P+++    + L   +M 
Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859


>gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG]
          Length = 881

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/652 (14%), Positives = 197/652 (30%), Gaps = 159/652 (24%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK--------ACFNLDIPIHRWICTLVL 99
             +          L   +V     +S  + TV              L +P       ++L
Sbjct: 345 TKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNIVAAHRLGLKLP--DIAFDVLL 402

Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           A     P   +      A       +   +++  +  K         R  P  +  +  F
Sbjct: 403 ASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAK---------RQVPEDKLLFEQF 453

Query: 158 GE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  +    D+T      ++ +  +  E  L  +   +  +G  ++      +    
Sbjct: 454 ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEF 513

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKK 268
                 L++++     G+  +    ++L   LF +  L +   T+T       VL+  K 
Sbjct: 514 SQSIKVLEEKIYGEA-GVKFNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKS 572

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
            +P    +                                 + G ++             
Sbjct: 573 ASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLLKAQ 601

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVADLAG 383
           +P   + H    Q +T      + DP+   I +      +R   + S    ++  +D + 
Sbjct: 602 MP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHPDWQIFSSDYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442
           IE RVL+ ++G++   +AF+ G D++  T  + F +  P +VT D R   K     + Y 
Sbjct: 661 IELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG 720

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                   +A   G++       +                                    
Sbjct: 721 ISDY---GLAQNIGISRKQAKAFIDGYF-------------------------------- 745

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561
                + + + H       + +    ++  E+G    +  +RR +P ++           
Sbjct: 746 -----EQYPKVH-------DYMENMVKKAREDGYVETLFHRRRYLPQIHS---------- 783

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
               R+   R     R+ +NT                   +Q  + DI+   M+   KA 
Sbjct: 784 ----RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQKAL 820

Query: 622 ------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                   ++L VHDE++ E P  +      L   +M S  S A  +PLK E
Sbjct: 821 DEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLA--VPLKVE 870


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 151/501 (30%), Gaps = 125/501 (24%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VD      ++  +  +  +L +E+  L  G   +     +L
Sbjct: 431 EIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLA-GEEFNLNSPRQL 489

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF + GL +   T+T         ++L P                        E + 
Sbjct: 490 GVILFEKLGLPVIKKTKTGYSTDAEVLEELLP----------------------FHEIIG 527

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   L +    +          P    R  + H   +Q  T      +S+P+   I
Sbjct: 528 K------ILNYRQLMKLKSTYTDGLMPLINERTGKLHTTFNQTGTLTGRLASSEPNLQNI 581

Query: 360 -----ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                +   +R   I S G   +V AD + IE R+LA  + E   ++A++ GED++  T 
Sbjct: 582 PIRLELGRKLRKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTA 641

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F V+  +VT + RA  K +   + Y         +     +        +K      
Sbjct: 642 SEVFGVSLEEVTPEMRAHAKSVNFGIVYGISDF---GLGRDLKIPREVAGKYIK------ 692

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                    +   ++   L +      E
Sbjct: 693 --------------------------------------NYFANYPKVREYLDELVRTARE 714

Query: 534 NG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
            G    +  +RR +P +  K                        R+ +NT          
Sbjct: 715 KGYVTTLFGRRRYIPELSSKNRT---------------VQGFGERTAMNTPL-------- 751

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646
                     Q  + DI+   M+N  K          ++L+VHDE+V E P  +      
Sbjct: 752 ----------QGSAADIIKLAMINVEKELKARKLKSRLLLSVHDELVLEVPAEELEEVKA 801

Query: 647 LYH-LMTSNPSWAKGLPLKAE 666
           L   +M S       +PL AE
Sbjct: 802 LVKGVMESVVE--LKVPLIAE 820


>gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054]
          Length = 895

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 121/674 (17%), Positives = 192/674 (28%), Gaps = 155/674 (22%)

Query: 26  EDVCVIL---FAFGFDDHPVELWDCVHDPVM----PQVLKEA--------LENTDVTIVA 70
           ED    L   +++      VE              P  L EA        L +       
Sbjct: 326 EDARTALAADYSWALGSGEVEQIALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKAL 385

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           H +     V++A                LA     P       + L         G+ L 
Sbjct: 386 HIAK---QVMRAFAERGWSFAGVTADTALAAYLEKPGRRAFTLDVLAEEYL----GRSLA 438

Query: 131 ARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
               + ET +  +D ++P+     +             G           +E     E  
Sbjct: 439 PATAQAETGQLSFDADEPDPTAGAQALMTRARAVHDLAGLFDTRLAEVGAVELFHDMELP 498

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           +  L   +   G   D      L      E  +  +E  +   G   +    ++L+  LF
Sbjct: 499 IAELLARMERHGIAADREWLRGLEAQFAAEIQRCVEEAHA-AAGREFNLGSPKQLQEILF 557

Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            + GL      +T       +   L  Q        +   R                 +L
Sbjct: 558 GDLGLPKTKKIKTGYTTDADALTWLATQTTNELPVILLRHRDQA--------------KL 603

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
           R T++  G  +T         PQ      R H   +Q++       + DP+   I     
Sbjct: 604 RTTVE--GLLKTVS-------PQ-----GRIHTTFNQMVAATGRLSSQDPNLQNIPVRTE 649

Query: 361 -SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   +  EG   L+ AD + IE R++A ++ ++  ++AF +GEDL+ T  ++ F 
Sbjct: 650 EGRAIRRAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVASQVFA 709

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           VAPA V  + R   K M   L Y   A    +     G+       L+ T          
Sbjct: 710 VAPADVDAEMRRKIKAMSYGLAYGLSAYGLSQ---QLGIKPAEAQGLMDTYF-------- 758

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                                R   + + LH   E+    G   
Sbjct: 759 ------------------------------------ERFGGVRDYLHNVVEEARAVGYTE 782

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
               RR                 LP                L +  RQ  RE      L 
Sbjct: 783 TLLGRRRY---------------LP---------------DLTSDNRQ-RREMAERMALN 811

Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651
             I Q  + DI+   M+   +A         ++L VHDEIV E    +      L    M
Sbjct: 812 API-QGSAADIVKIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEALVREQM 870

Query: 652 TSNPSWAKGLPLKA 665
                     PL+A
Sbjct: 871 AGA------YPLRA 878


>gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
 gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNYGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 888

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 101/638 (15%), Positives = 209/638 (32%), Gaps = 153/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALK 110
           Q  K  +E+     V +++   + +LK    L + +      +++A        L   + 
Sbjct: 367 QAFKNWIEDPHAKKVLYDAKRSQVILK---GLGMDLEGVSDDVLIASYLIHARDLSGDVA 423

Query: 111 AVGEALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            V     L    +    E+  +  K    E    LYD +               K  +  
Sbjct: 424 NVAREFNL--DYLAYDSEVYGKGKKVAVPEDKTRLYD-HLVAKVSVINDLLPIIKDRLEA 480

Query: 168 --TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               E+++++      E  L  +   +   G  VD +    L+Q  + +  +L +E+   
Sbjct: 481 DEMVELYRKI------ELPLAQVLAKMEIMGISVDRSRLVGLSQSYEEQLDQLQEEIYRE 534

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKL--TPQAIQVFNNRMR 282
             G+  +    ++L   LF + GL     T++       S  +KL   P    +   R  
Sbjct: 535 A-GVEFNINSTQQLSKVLFEDMGLKGGKKTKSGNYSTAQSELEKLQGVPIIDLILAYRQL 593

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +   +  +++ ++ DG++                               H    Q 
Sbjct: 594 AKLQSTY-VQGILDYIHQDGKV-------------------------------HSRFIQT 621

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396
           +T      ++DP+   I         +R   + S     +  +D + IE RVLA ++G+ 
Sbjct: 622 LTTTGRLSSADPNLQNIPIRTEEGRKIRQAFVPSHPDWVIFSSDYSQIELRVLAHVSGDP 681

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF+  +D++  T A+ F+     ++KD+R   K +   + Y        +      
Sbjct: 682 HLQEAFKENKDIHTATAAKVFHKDEKDISKDERRQAKAVNFGIVYGISDYGLSQ---NLS 738

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +                                           + + + +
Sbjct: 739 ISRQEAKAFID-----------------------------------------KYFEIYPK 757

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575
           V+E    + ++ E   E G A     RR                 LP  ++  Y      
Sbjct: 758 VAE---YMDKSVEIAREAGYAKTLFNRRRY---------------LPDLKAKNYNVRSFA 799

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629
            R+ +N+                   +Q  + DI+   M+   +A        +++L VH
Sbjct: 800 ERTAMNSP------------------IQGTAADIIKVAMVEMDQALKEHQLQANLLLQVH 841

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE++ E    D E  A+++  +M +  S    +PL  +
Sbjct: 842 DELIFEVAKEDLEDLAALVKDVMENAVS--LDVPLIVD 877


>gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 881

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 101/655 (15%), Positives = 198/655 (30%), Gaps = 165/655 (25%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101
             +          L    V     ++  + TV     N+       + +      ++LA 
Sbjct: 345 TKEETYVSTDVTLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404

Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
               P      L  + E      L   +   GK                 R  P   + +
Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450

Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             F       +    D+T   E   + +  +  E  L  +   +  +G  ++      + 
Sbjct: 451 GQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265
                    L++++ +   G+  +    ++L   LF +  L +   T+T       VL+ 
Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K  +P    +                                 + G ++          
Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380
              LP   + H    Q +T      + DP+   I +      +R   + S EG ++  +D
Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R   K     +
Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y        +     G++       +                                 
Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558
                     + + H       + +    ++  E+G    +  +RR +P ++        
Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R+   R     R+ +NT                   +Q  + DI+   M+   
Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           KA         ++L VHDE++ E P+ +    S L   +M S       +PLK E
Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870


>gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 880

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 109/654 (16%), Positives = 199/654 (30%), Gaps = 153/654 (23%)

Query: 55  QVLKEALENTDVT--IVAHN---------SYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           +VL++     D+      H          S     + K  F   I  + +  + VL    
Sbjct: 327 EVLRDNYHREDIIGFAWGHGEQIYASTDLSLLSTDLFKKVFEKPIATYDFKRSKVLLSHL 386

Query: 104 GLPSALKAVGEALK---LSSQKMEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFG 158
           GL     +    L    LS+ +  E   +   F     E  + +Y +          L  
Sbjct: 387 GLDLVAPSYDARLANYLLSNVEDNELTTIARLFTDISLEADDSIYGKGVKRAVPEKELLL 446

Query: 159 EYCKGDVTV----------TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            +    V V                ++      E  L  +   +   G  V+ A    + 
Sbjct: 447 GHLARKVKVLLDSRAPMVEKLADHDQIALYHEIELPLANILAKMEIEGIKVNRATLQDMA 506

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSN 266
           +        L QE+  +  G   +    ++L + LF +  L LE    T+T     +   
Sbjct: 507 EQNKAIIEALTQEIYDMA-GQEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVL 565

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           ++L P A  V                               L +   ++           
Sbjct: 566 ERLAPIAPIVAK----------------------------ILDYRQITKLQSTYVIGLQD 597

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVAD 380
             L    + H    Q +T      + DP+   I         +R     S E   L+ +D
Sbjct: 598 YILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFTPSQEDAVLLSSD 656

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELAL 439
            + IE R+LA ++G++  + AF  G D++ +T  R F +     VT + R   K +   +
Sbjct: 657 YSQIELRLLAHISGDEHLIAAFNEGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGI 716

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y         +++  G+        + T      + +     +   EN    A +  ++
Sbjct: 717 VYGISDF---GLSNNLGITRKQAKSYIDT------YFERYPGIKAYMENVVREAKDKGYV 767

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                                                  + ++RR++P +          
Sbjct: 768 -------------------------------------ETLFKRRRELPDI---------- 780

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
               + R+   R     R+ +N+                   +Q  + DIL   M+N   
Sbjct: 781 ----NSRNFNVRSF-AERTAINSP------------------IQGSAADILKIAMINLDN 817

Query: 620 AG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           A         ++L VHDEIV E P+T+      L    M      A  +PL+A+
Sbjct: 818 ALQAGGFKAKMLLQVHDEIVLEVPNTELAAVKKLVKETMEVAVDLA--VPLRAD 869


>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
 gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
          Length = 904

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 112/633 (17%), Positives = 196/633 (30%), Gaps = 154/633 (24%)

Query: 54  PQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
           P+ ++     L +  V    H + +    L+        I        LA     P    
Sbjct: 376 PEDVRALDGWLADPAVPKAFHEAKWATHALRG--GGFAEIAGVTTDTGLAAYIARPGQ-- 431

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               +  L    +   +  +     GE    L D +    +EA     E         RE
Sbjct: 432 ---RSFNLPDLALRYLRRQLGPEDGGEKQLSLLDDSTGEDKEADDSITEAA-----AIRE 483

Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +   L+ +  K          E  L ++   + + G  VD      L+        +  +
Sbjct: 484 LGGALDDVLDKAGSADLLRTMELPLTFVLARMEEAGIAVDQDGLAGLHADFAARVKQAAE 543

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
              S+  G   +    ++L+  LF E G+     T+T       + + L  +    F   
Sbjct: 544 SAYSVI-GKEINLGSPKQLQVVLFDELGMPKTKKTKTGHTTDADALQWLFEKTEHPFLLY 602

Query: 281 MRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +   R A         L++A+  DGR+  T                              
Sbjct: 603 LLEHRDATRLMTTAQGLIKAIGPDGRIHTT------------------------------ 632

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAW 391
              Q +       ++DP+   I      +  +R   +  EG + L+ AD + IE R++A 
Sbjct: 633 -FRQDVAATGRLSSTDPNLQNIPVRTDEARRIRGVFVVGEGHEALMTADYSQIEMRIMAH 691

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G+   ++AF TGEDL+    +R+F V   +V  + R   K M   L Y   A     +
Sbjct: 692 LSGDDGLIEAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAMSYGLAYGLSAF---GL 748

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           AS  G++                                                K    
Sbjct: 749 ASQLGVSGEEA--------------------------------------------KAQMD 764

Query: 512 QKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +R   + + LH   E+    G    +  +RR +P +                     
Sbjct: 765 AYFARFGGVRDYLHAVVEEARRKGYTETLFGRRRYLPDL--------------------- 803

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DI 624
                      T+  Q  R       L   I Q  + DI+   M++  +A         +
Sbjct: 804 -----------TSDNQQQRAVAERAALNAPI-QGSAADIIKVAMIHVAEALAEREMRSRM 851

Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656
           +L VHDE+V E  D + E  A+++   M S   
Sbjct: 852 LLQVHDELVLEVADGEREELAALVSEQMGSAIE 884


>gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
           In Complex With Fragment Dna Polymerase I From Bacillus
           Stearothermophilus
          Length = 580

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 81/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +   G  VD      + + +  +   ++Q +  L  G   +    +
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 236

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF +  L +   ++T         +KL P                    + +VE 
Sbjct: 237 QLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAP-------------------YHEIVE- 276

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L +    +              P   + H   +Q +T      +++P+  
Sbjct: 277 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 328

Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   + SE    +  AD + IE RVLA +A +   ++AF    D++  
Sbjct: 329 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 388

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F V+  +VT + R   K +   + Y         +A    ++    A  +     
Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 440

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E + ++    +   EN  + A +  ++ T                              
Sbjct: 441 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 471

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                     +RR +P +                R+   R     R  +NT         
Sbjct: 472 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 499

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M++        +    ++L VHDE++ E P  +     
Sbjct: 500 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 549

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
            L   +M    +    +PLK +
Sbjct: 550 RLVPEVMEQAVT--LRVPLKVD 569


>gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
 gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 106/627 (16%), Positives = 194/627 (30%), Gaps = 132/627 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVG 113
            LK  +EN  +     N   +  +LK    + +      ++    L  +    + L  + 
Sbjct: 372 ELKSVIENAGIIKNVFNIKAQLILLKR-LGIKLKGTKFDFLLVSYLLDTTDNDNELATLA 430

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +   L     E+     A+F   E    +   +  N  +      E    D        +
Sbjct: 431 QRFDLYMTSDEDIYGKGAKFAIPEDDARVL-AHLANKADILMQV-EQSAFDALQE---HE 485

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +    +  E  L  +   +  +G  +D              R    ++   +  G   + 
Sbjct: 486 QTHLYTEIELPLAQVLADMEYQGIKIDQKRLRD-IGSDLEGRIHAIEDAIYIEAGEKFNI 544

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
              ++L   LF + GL +   T+T     +   +KL  QA  V                 
Sbjct: 545 NSPKQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQAPIVD---------------- 588

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
                         LQ+   ++               + S+ H    Q +T      + D
Sbjct: 589 ------------HILQYRQLAKLKSTYVEGLLTVVHDQDSKIHTRFLQTLTQTGRLSSVD 636

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R+  + SE   ++V AD + IE RVLA M G++   +AF  GED
Sbjct: 637 PNLQNIPMRTEEGRQIRTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGED 696

Query: 408 LYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T    F +     V    R   K +   + Y         +A+  G++       +
Sbjct: 697 IHAETARAVFGLKDDAPVDALMRRTAKAVNFGIVYGISDF---GLANNLGISRGEAKSFI 753

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
            T      +++      WM     E A E  F+ T                         
Sbjct: 754 DT-----YFKEFPQIHAWM-AKIKEIAHEQGFVET------------------------- 782

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                       IA++RR +P +  K           + RS         R+ +N+    
Sbjct: 783 ------------IAKRRRYLPEIGSKNF---------NLRSFA------ERTAMNSP--- 812

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD 640
                          +Q  + DI+   M+    A         ++L VHDE++ E P  +
Sbjct: 813 ---------------IQGSAADIIKIAMIKVADALQEHHMQARMLLQVHDELIFEAPIDE 857

Query: 641 EFNASMLYH-LMTSNPSWAKGLPLKAE 666
               + L   +M S       +P++ E
Sbjct: 858 IQELTELVTNVMDSAVV--LDVPMRVE 882


>gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
 gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
          Length = 878

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 206/674 (30%), Gaps = 165/674 (24%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +    ++   +  ++   L +A     +        F+R+ 
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKA-IYVSTNLDLLKDDLFKAALAKPIKTY----DFKRSK 378

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLP------SALKAVGEALKLSSQKMEEGKELIAR 132
           VL +   +D+P         LA+           S +  +     L S +   GK +   
Sbjct: 379 VLLSHLGVDLPAP--AFDSRLAKYLLSTVDDNELSTIAQLYTDYVLDSDEAVYGKGVKR- 435

Query: 133 FCKGETHECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               E    L    +     NH E   L            +        L   EQ L  +
Sbjct: 436 -AVPEKAVLLSHLARKIVVLNHSEKVML-----GKLTEHQQA-----SLLFDMEQPLANV 484

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V       + +        L QE+  L  G+  +    ++L   LF +  
Sbjct: 485 LAKMEIAGISVKKETLQEMEKANQAAIDNLTQEIYDLA-GMEFNINSPKQLGELLFDKMQ 543

Query: 249 LHL--EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           L       T+T     +   ++L P +  V                              
Sbjct: 544 LPTSYTKKTKTGYSTAVDVLERLAPISPIVSK---------------------------- 575

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            L++   ++             L +  + H    Q +T      + DP+   I       
Sbjct: 576 ILEYRQIAKLQSTYIVGLQDFIL-KDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQG 634

Query: 362 DCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   +     + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F + 
Sbjct: 635 RLIRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIE 694

Query: 421 -PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
            P  VT + R   K +   + Y         +A+  G+        ++T      + +  
Sbjct: 695 KPEDVTPNDRRNAKAVNFGIVYGISDY---GLANNLGIPRKVAKQYIET------YFERY 745

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   E     A +  ++ T                                     +
Sbjct: 746 PGIKDYMERVVRDAKDKGYVET-------------------------------------L 768

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             +RR++P +              + R+   R     R+ +N+                 
Sbjct: 769 FHRRRELPDI--------------NARNFNVRQF-AERTAINSP---------------- 797

Query: 600 NIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
             +Q  + DIL   M+N  KA  +      ++L VHDEI+ E P  + E    ++   M 
Sbjct: 798 --IQGSAADILKIAMINLDKALVEGKFKTKMLLQVHDEIILEVPKDELEAIEKLVKETME 855

Query: 653 SNPSWAKGLPLKAE 666
           S       +PL A+
Sbjct: 856 SAIE--LSVPLVAD 867


>gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
 gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
          Length = 877

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              +  P   +            V     + ++L        L   EQ L ++   +   
Sbjct: 431 GVKKAIPEREKFLEHLARKIAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253
           G  V       +    ++   KL QE+  L  G   +    ++L   LF +  L LE   
Sbjct: 491 GIKVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLELPLEYTK 549

Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+T       VL     + P   ++ + R  A   +   +  L + + +DG++      
Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                    H    Q +T      + DP+   I         +R
Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
              +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  
Sbjct: 638 KAFVPEREDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +++  G++       + T               
Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKGAKAYIDTYF------------- 741

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                           R   + N + +   +  + G      KR
Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                 LP   S  +   G   R+ +N+                   +
Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797

Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA    GY   ++L VHDEIV E P ++      L    M    
Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 857

Query: 656 SWAKGLPLKAE 666
                +PL A+
Sbjct: 858 Q--LSVPLIAD 866


>gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
 gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
          Length = 882

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 105/646 (16%), Positives = 195/646 (30%), Gaps = 147/646 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSN 103
           WD         VL E LE+     + H+S  F+  +LK    L+           +A   
Sbjct: 349 WDLTDTEA-KAVLIEFLESATYQKIVHDSKNFKHELLKVGLGLN----GVCFDTFIAAYL 403

Query: 104 GLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR---NKPNHREAWRL 156
             P      L  + E L ++ Q +   + L+ +    +T   L D    N    R    L
Sbjct: 404 LHPTNKSYDLAEL-EELFINKQSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLAL 462

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
                  +    + + +        E  L  +   +   G  VD     +  + +     
Sbjct: 463 SVTEAMKEALQEQNMTRLFY---DIEMPLIDVLFDMEVEGIKVDPEGLRSYGEELQGLLD 519

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA 273
            L   +     G   +    ++L   LF + G+     T+T   T   VL + K   P  
Sbjct: 520 TLTTSIYE-AAGESFNINSPKQLGVILFEKLGIPCAKKTKTGYSTAAEVLEALKNDYPIV 578

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            Q+   R                                 ++             L   +
Sbjct: 579 AQILEYRQY-------------------------------AKLKSTYVDGL-LNVLTEQN 606

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387
           + H   +Q IT      +++P+   I         +R   + S E    +  D + IE R
Sbjct: 607 KIHSTFNQTITATGRLSSTEPNLQNIPVKFEMGKKIRQLFVPSSENHIFLDGDYSQIELR 666

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA M+G+   +KAF+   D++  T ++ F+V    VT  QR+  K +   + Y   A A
Sbjct: 667 VLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFEDVTSMQRSNAKAVNFGIVYGISAFA 726

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +    +                    ++A+ +     E +P                 
Sbjct: 727 LSEDLKIS-------------------QKEAQKYIDGYFEKYP----------------- 750

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
              +     + +    +   + +T       +  ++R++P                    
Sbjct: 751 -CIKAYLDEIIDF--AMQNGYVET-------LYHRKREIP-------------------- 780

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------ 621
                        N   R+  +            +Q  S DI+   M+   +        
Sbjct: 781 --------EILASNYNMREFGKRVA-----MNTPIQGTSADIIKIAMIRVHQKLKEHSLK 827

Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
             ++LTVHDE++ +   D  E    +L   M         +PL  +
Sbjct: 828 SKLILTVHDELLIDAHKDEVEIVKKLLKEEMEHAAD--LSVPLVVD 871


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 103/588 (17%), Positives = 193/588 (32%), Gaps = 102/588 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKY-AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           +  D ET S        +  Y A+ V + L    F+ + + L+       + + + + L 
Sbjct: 338 ISFDLETSS--------LDPYQADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVDLLN 389

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSS 120
           N  V     N  ++ TVLK      I + +     ++A     P +        A +   
Sbjct: 390 NKKVI--GQNLKYDITVLKV---NGIELSKVHFDSMIAAYLLNPDSRRFNMDDLAKEYLD 444

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
            K  + KE++ +  K  T   +  +             EY   D  +   +F+ L+P   
Sbjct: 445 YKTIKYKEVMGKDIKLLTLGDIDKK----------RVVEYAGEDADIAYRLFEVLKPKLE 494

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                      E     +   +   G   D+     L +  + + + L  E++ +  G  
Sbjct: 495 EFELFELFEKIEMSTINVLSEMEMNGVYFDLKELQKLEEEYNKKLSSLMYEMKKI-VGYD 553

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    +++   LF   GL  +  T++    T    L + +   P   ++   R      
Sbjct: 554 FNPNSPKQVGELLFENLGLKGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYR------ 607

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              K                        +         P     +  R H   +Q  T  
Sbjct: 608 ---KYQ----------------------KLLSTYIIAIPKLVNKKTGRVHTSFNQTGTAT 642

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +S+P+   +       + +RS V A  +   L+ AD + IE RVLA +  ++  + 
Sbjct: 643 GRLSSSEPNLQNLPIREEDGERIRSTVKAQKDDYVLLSADYSQIELRVLAHLTNDETLIN 702

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  GED++  T A  F V    V  + R +GKV+  +L Y         +A    + + 
Sbjct: 703 AFNNGEDIHALTAAAIFGVKIDDVDYNMRRVGKVVNFSLVYGSSPY---GLAENLKIPVE 759

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +        +       +  QE+  + A +  ++ T   R     ++    +   
Sbjct: 760 DAKDFMN------RYFKTYQKVKEYQESSLKIATQKGYVETIFGR-----KRFLKNIKTG 808

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            +EL +    T   G A    K   +          NL   LP    L
Sbjct: 809 KSELKRIVINTPIQGSAADIMKLAMI----------NLYKKLPKEAKL 846


>gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
 gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
          Length = 879

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 94/633 (14%), Positives = 197/633 (31%), Gaps = 143/633 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALK 110
              KE +++        +S   R V+   ++ D+ +      ++LA     P      + 
Sbjct: 358 DAFKEWVQDETKKKWVFDSK--RAVVALRWH-DVDLKGVDNDVLLASYVVNPQKSYEDVA 414

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT-R 169
           +V +   L+    +E       + KG       +     H    +        D+T+   
Sbjct: 415 SVAKEYGLNIALSDE-----KVYGKGAKQAIPPEDELKGH-LGRKAAAISALHDLTLEAL 468

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E   + E     E  L  +   +   G  VD+     + + +  +  + ++ +  L  G 
Sbjct: 469 EKNDQHELYEDLELPLALILGEMESLGVKVDLKRLEKMGEELTKKLKEYEETIHRLA-GE 527

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRS 286
             +    ++L   LF + GL +   T+T       VL   +        + + R    + 
Sbjct: 528 TFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSADVLEKLEDKHEIIRSILHYRQ-IGKL 586

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               +  L++    D                                + H   +Q +T  
Sbjct: 587 QSTYVEGLMKVTRKD------------------------------THKVHTRFNQALTQT 616

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               ++DP+   I         +R   + S EG  +  AD + IE RVLA ++ ++  ++
Sbjct: 617 GRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELRVLAHISQDENLIE 676

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF    D++  T    F+V+  +VT   R   K +   + Y        +     G+   
Sbjct: 677 AFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 733

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +      E +  +    +   E   + A +  ++ T                   
Sbjct: 734 EAAAFI------ERYLTSFKGVKTYMEEIVQEAKQKGYVTTLL----------------- 770

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                               ++RR +P +  +                        R+ +
Sbjct: 771 --------------------KRRRYIPDITSRNFN---------------IKSFAERTAM 795

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           NT                   +Q  + DI+ + M++            +++L VHDE++ 
Sbjct: 796 NTP------------------IQGSAADIIKKAMIDMARRLKEENLQTNLLLQVHDELIF 837

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           E P  +      +   +M +       +PLK +
Sbjct: 838 EAPKEEIAILEKIVPEVMENALQ--LDVPLKVD 868


>gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg]
 gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg]
          Length = 994

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 85/539 (15%), Positives = 165/539 (30%), Gaps = 143/539 (26%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALA 204
             + +    +  V   I+  L  L S+          E  L Y    +  RG  VD    
Sbjct: 561 DQYKKAACYESYVAHHIYPVLLKLLSERGLLPLFAGIEMPLVYTLYDMEQRGIRVDTNGL 620

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QR 261
              +  + V   +L++++  L  G+  +    ++L   LF   GL     T+T       
Sbjct: 621 KDYSDQLGVSIVELEKQIFEL-VGVEFNINSPKQLGEILFQRLGLSYGKKTKTGYSTSAE 679

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL       P    +   R      +    + LV  +  DGR                  
Sbjct: 680 VLEKLSSEHPVIKLILQYRQLTKLKSTYA-DGLVSYVEGDGR------------------ 720

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376
                         H   +Q I       +++P+   I     +   +R   I  +G   
Sbjct: 721 -------------IHGTFNQTIAATGRLSSTEPNLQNIPIRMELGRKIRKVFIPEDGYLF 767

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R+LA M+ +   ++A+   +D++  T +  F+    +VT  QR+  K + 
Sbjct: 768 LDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVFHTPFDEVTSAQRSNAKAVN 827

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   + +         +                    AE +       +P      
Sbjct: 828 FGIVYGISSFSL---GQDLDITRKE----------------AEEYINKYFMTYP------ 862

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                            +T  +G     ++   V  +Y +    
Sbjct: 863 -------------------------------GVKTYLDGLIEEGKETGVVKTLYGRIRP- 890

Query: 557 NLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                +P+  +  +       R  +N+                   +Q  + DI+   M+
Sbjct: 891 -----VPNLTNSNFMKRSAEERIAMNSP------------------IQGTAADIMKLAMI 927

Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL--PLKAE 666
           +        K    ++L +HDE++ ET +++      +  +M      A  L  PL+ E
Sbjct: 928 HVNQVLKERKLKSRLLLQIHDELLVETHESE---VEEVAKIMKEEMQQAASLSVPLEVE 983


>gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1]
 gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1]
          Length = 880

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 123/686 (17%), Positives = 213/686 (31%), Gaps = 160/686 (23%)

Query: 9   ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           E  S  D       G   + ED    L    + +      D ++      +L+EAL    
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSDVSLLQEALFKKA 366

Query: 66  VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123
           ++       F+R+ VL   FN+D+P         LA+     +    V    +L +   +
Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EP 177
           +    +  +  K         R  P          +  K  V     + ++L      E 
Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLEHLAKKVKVLVDSEANVMQQLKANEQEEL 475

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +  RG  V     + +          L QE+  L  G   +    +
Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSPK 534

Query: 238 KLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           +L   LF   GL +E    T+T     +   ++L P +  V                   
Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK----------------- 577

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                       L++   ++             L    + H    Q +T      +SDP+
Sbjct: 578 -----------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPN 625

Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D++
Sbjct: 626 LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIH 685

Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +T  R F +  P  VT + R   K +   + Y              G+        + T
Sbjct: 686 TSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYIDT 742

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                          R   + N +    
Sbjct: 743 Y--------------------------------------------FERYPGIKNYMETVV 758

Query: 529 EQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            +  + G    +  +RR +P +              + R+   R     R+ +N+     
Sbjct: 759 REAKDKGYVETLFHRRRSLPDI--------------NSRNFNIRQF-AERTAINSP---- 799

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDE 641
                         +Q  + DIL   M+N  +     GY   ++L VHDEIV E P+ + 
Sbjct: 800 --------------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEI 845

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAE 666
                L    M S  S    +PL A+
Sbjct: 846 GAIKELVTKTMESAIS--LSVPLIAD 869


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 97/663 (14%), Positives = 213/663 (32%), Gaps = 162/663 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60
           +D E+    D    G+    ++  ++ F+F  +++        H        +   L+ A
Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQI--SLQSA 368

Query: 61  LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  +V      + HN  ++  +++  F+L++P  ++  T++LA        +     AL
Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+              + +           +Y   D  +T   +    
Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474

Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LE PL       E +   +   + + G  +D      L +  + E   L +E+ +L  
Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL+      P   ++ + R   +
Sbjct: 535 D-RFNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYR-ELA 592

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                             + SR +    Q  T
Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC +A +G   +  D + IE R+LA  + ++  L
Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++  T    F     +   + R++ K +   L Y  G   ++ ++    +  
Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           N                                              K    +     + 
Sbjct: 737 NLA--------------------------------------------KSYIEKYFENFTS 752

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +     +   +  +NG                        ++  SGR          + Y
Sbjct: 753 IKKYFEKVKNEAKQNG-----------------------FIVTLSGR----------KRY 779

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + D++   M+   K   +   ++L +HDE++ E 
Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839

Query: 637 PDT 639
            D 
Sbjct: 840 KDD 842


>gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20]
 gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains
           [Leuconostoc citreum KM20]
          Length = 893

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 100/627 (15%), Positives = 204/627 (32%), Gaps = 132/627 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            L+  +EN D+     N   +  + K    L +   ++   LV    +   +  +    A
Sbjct: 372 ELRAVIENGDIKKNVFNVKAQLILFKR-LGLTLKGAQFDFLLVAYLLDTTDNDNEMSTLA 430

Query: 116 LKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            +     + E +E+  +  K      E L   +  +  +A                +  +
Sbjct: 431 QRFDVY-LTEDEEIYGKGAKYAVPDDEELVLMHLAHKADALIQLEMPA----LSALQSHQ 485

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +    +  E  L ++   +  +G+ +D      + + ++     +++ +  L  G   + 
Sbjct: 486 QTHLYTEIELPLAHVLAEMEYQGFKIDRKRLQVIGEDLEARIHTIEEAIY-LEAGEKFNL 544

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
              ++L   LF + GL +   T+T     +   +KL  QA  V                 
Sbjct: 545 NSPKQLGILLFEKMGLPIIKKTKTGYSTAVDVLEKLASQAPIVE---------------- 588

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
                         LQ+   ++                 S+ H    Q +T      + D
Sbjct: 589 ------------HILQYRQLAKIKSTYVEGLLAVVHTEDSKIHTRFLQTLTQTGRLSSVD 636

Query: 354 PDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   + S    ++  AD + IE RVLA + G+Q   +AF  GED
Sbjct: 637 PNLQNIPMRTEEGRQIRRAFVPSQPNWQIFGADYSQIELRVLAHITGDQNMQRAFLNGED 696

Query: 408 LYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T    F +     V    R   K +   + Y         +++  G++       +
Sbjct: 697 IHAETARAVFGLDNNAPVDPLMRRTAKAVNFGIVYGISDY---GLSNNLGISRAEAKRFI 753

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +T      +++      WM +   + A E  ++ T                         
Sbjct: 754 ET-----YFKEFPQIHEWMTKIKAQ-AHEQGYVET------------------------- 782

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                       IA++RR +P +  K           + RS         R+ +N+    
Sbjct: 783 ------------IAKRRRYLPEIKSKNF---------NLRSFA------ERTAMNSP--- 812

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD 640
                          +Q  + DI+   M+    A        +I+L VHDE++ E P+ +
Sbjct: 813 ---------------IQGSAADIIKIAMIKVADALKDNQLQANILLQVHDELIFEAPEDE 857

Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                 ++  +M S    A  +P++ +
Sbjct: 858 IETLRDIVTRVMDSAV--ALDVPMQVD 882


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 98/663 (14%), Positives = 212/663 (31%), Gaps = 162/663 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP----QV 56
           +D E+    D    G+    ++  ++ F+F  +++        H        +     + 
Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKK 370

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             EA+ N  V    HN  ++  +++  F+L++P  ++  T++LA        +     AL
Sbjct: 371 AIEAIFNHFVI--GHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+              + +           +Y   D  +T   +    
Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474

Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LE PL       E +   +   + + G  +D      L +  + E   L +E+ +L  
Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL+      P   ++ + R   +
Sbjct: 535 D-RFNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYR-ELA 592

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                             + SR +    Q  T
Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC +A +G   +  D + IE R+LA  + ++  L
Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++  T    F     +   + R++ K +   L Y  G   ++ ++    +  
Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           N                                              K    +     + 
Sbjct: 737 NLA--------------------------------------------KSYIEKYFENFTS 752

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +     +   +  +NG                        ++  SGR          + Y
Sbjct: 753 IKKYFEKVKNEAKQNG-----------------------FIVTLSGR----------KRY 779

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + D++   M+   K   +   ++L +HDE++ E 
Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839

Query: 637 PDT 639
            D 
Sbjct: 840 KDD 842


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
          Length = 881

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 117/666 (17%), Positives = 219/666 (32%), Gaps = 162/666 (24%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFER-TVLKACFNLD 87
           +I FA+G      +L+      ++   + KE LE T + +      F+R  VL +   + 
Sbjct: 338 IIGFAWGTKG---QLYVSTDTGLLQTPIFKEFLEKTPLKVY----DFKRAKVLLSHLGIT 390

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +          LA+          +     L SQ      E++  + KG           
Sbjct: 391 L--QNPAFDSRLAKYLLSTVEDNEISTIASLYSQITLPLDEVV--YGKGAKKII------ 440

Query: 148 PNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           P                +          +   +L+ L   EQ L  +   +   G  V+ 
Sbjct: 441 PEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVER 500

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTC 259
                +    +    +L QE+  L  G   +    ++L   LF +  L LE    T+T  
Sbjct: 501 QTLQDMQVENEAVLERLTQEIYELA-GEEFNINSPKQLGVILFEKLELPLEYTKKTKTGY 559

Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                VL     + P   ++   R  A   +   +  L + +  DG++            
Sbjct: 560 STAVDVLERLAPIAPIVSKILEYRQIAKIQSTY-VIGLQDWILEDGKI------------ 606

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                              H    Q +T      + DP+   I         +R   +  
Sbjct: 607 -------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPE 647

Query: 372 E-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429
           E    L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  VT + R
Sbjct: 648 EVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDR 707

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +++  G++       ++T                     
Sbjct: 708 RNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIETYF------------------- 745

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPL 548
                                     R   + + + +   +  + G    + ++RR++P 
Sbjct: 746 -------------------------ERYPGIKDYMERVVREARDKGYVETLFKRRREIPD 780

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
           +              + R+   R     R+ +N+                   +Q  + D
Sbjct: 781 I--------------NSRNFNVRGF-AERTAINSP------------------IQGSAAD 807

Query: 609 ILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNA--SMLYHLMTSNPSWAKG 660
           IL   M++  +A         ++L VHDEIV + P TDE  A  +++   M S    A  
Sbjct: 808 ILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVP-TDELAAIKALVKETMESAIELA-- 864

Query: 661 LPLKAE 666
           +PL+A+
Sbjct: 865 VPLEAD 870


>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
          Length = 875

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 103/669 (15%), Positives = 208/669 (31%), Gaps = 161/669 (24%)

Query: 21  ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68
           +  Y E   ++LF+       +      V   D             +V +E  E+ ++  
Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESKEIKK 385

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + +++   RT+L+    L I  +     + LA     P   +   E   L+S+ + +   
Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLINPVRKEY--EISSLASEYLFKNIN 440

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               F K +    +           +++  E         +++ + L  +   EQ L   
Sbjct: 441 REDEFLKIKEVNIM--------PNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G+ VD  +   L +    E      E+ S++     +    ++L   LF +  
Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +   P   ++   R    +     +  L  A++ DG++ 
Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                                             +Q +T      +++P+   I      
Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631

Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V
Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT   R+  K +   + Y  G  +  +      +        +      E + +  
Sbjct: 692 PIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   EN  E A                              + + +  TI N     
Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVSTILN----- 767

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             +RR +  V                           R  +N+                 
Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794

Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
             +Q  + DI+   M+N  +          I+L VHDE++      + E   +++   M 
Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEME 852

Query: 653 SNPSWAKGL 661
                  GL
Sbjct: 853 QVLELKVGL 861


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 179/562 (31%), Gaps = 139/562 (24%)

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT-REIFKRLE------PLSS 180
           EL A     E      +R +    +   +  E     V    R +  RL        L  
Sbjct: 404 ELAAYLLSPEERNYSLERIRDGLGDEIDVHRENHGQAVLAVGRLLHARLAGSELLGLLQD 463

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L  +   +  RG  +D A  H    +V  E  +L + +     G   + R  ++L 
Sbjct: 464 LELPLTEVLVRMQKRGIRIDAARFHDFLGMVQAELDRLTRTIHEQA-GEEFNIRSSQQLA 522

Query: 241 TWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
             LF   GL          ++T   VL       P    V   RM     +   L  + +
Sbjct: 523 EVLFSRLGLACKQKTPGGAQSTSSSVLEGLAAEHPIVADVLEFRMYEKLRSTY-LEPMPQ 581

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
             + +GR+                               H   +Q+ T      +S+P+ 
Sbjct: 582 LADKNGRI-------------------------------HTTFNQLATATGRLSSSNPNL 610

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I     +   +RSC +AS G +LV AD + IE RVLA M+G+Q   +AF  G+D++  
Sbjct: 611 QNIPIRGALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHAR 670

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F+    +V+ D+R   K +   L                                
Sbjct: 671 TAGILFDTT--EVSADERRKAKTINFGLL------------------------------- 697

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                              +   E        +     +  K SRV E + E+    + +
Sbjct: 698 -------------YGMGPQKLGRELGISLKEAKEFIAVYFSKLSRVREFYEEIEAGAK-S 743

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
           +     +  R+R                 MLP   S             NT   Q  R  
Sbjct: 744 LGYVTTLAGRRR-----------------MLPEINS------------RNTNMAQQARRM 774

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA- 644
                    +VQ  + DI+ + M+   K+      G  ++L +HDE++ E P        
Sbjct: 775 A-----INTVVQGSAADIIKKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVG 829

Query: 645 SMLYHLMTSNPSWAKGLPLKAE 666
             +  +M S   ++  +PL  +
Sbjct: 830 EAVAGIMASV--YSLSVPLVVD 849


>gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342]
          Length = 882

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/626 (14%), Positives = 189/626 (30%), Gaps = 154/626 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++      L         I    +    L  +N   + ++ V 
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +     + + +E   +  +  K         +  P   E   +F  +    +   + +  
Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465

Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +L   L+ K         E  L  +   +   G  VD      +         ++++++ 
Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF + GL +   T+T       VL   K+  P    +   R
Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A   +   +  L++ +  D ++                               H    
Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R   +  E    +  +D + IE RVLA ++ 
Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y            
Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSP--- 729

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        + T                                           +K
Sbjct: 730 KLGITRKQAQQYIDTYF-----------------------------------------EK 748

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   E+ +  +   +     +  +RR +  +              + R+   R  
Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DIL   M+         K    ++L 
Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833

Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652
           VHDE+V E P+++    + L   +M 
Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 107/597 (17%), Positives = 195/597 (32%), Gaps = 97/597 (16%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PV-ELWDCVHDPVMPQVLKEA 60
           D ET S   L             ++ F+F  +       PV   +    D V  +  + A
Sbjct: 334 DTETDS---LETR-------SAKLVGFSFSLEGEVGYYVPVAHSYLGAGDQVSLEEARGA 383

Query: 61  LENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           +E      +V HN  F+  +L        P  R   +++LA      + +    +  +  
Sbjct: 384 IEKIFSAQVVGHNLKFDLEILHGALGF-YPKGRIGDSMILAWLLDSGAPVGLDFQMKRWF 442

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +M   ++++              + +   + A     EY   D   T  ++ RLE   
Sbjct: 443 GHEMIPFEKMVK-------------KGETFAQVALEEAAEYAGEDALATYRLYFRLEEEL 489

Query: 180 SK-------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            K             E    +    + +RG  VD      LN  V+V   +L  E+ +  
Sbjct: 490 KKRGCESLLGLAESLEFPFIHTLIEMEERGIRVDTEFFARLNAEVEVRIRELSGEVFAHA 549

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF +  L     T+T     ++VLS    + P    +   R   
Sbjct: 550 GG-EFNLNSTQQLGGVLFEKLHLPSGKKTKTGYSTDEKVLSELLGVHPIIEPILEYR-EL 607

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L      D                             +  R +       
Sbjct: 608 FKLKSTYIEPLTRFALQD-----------------------------KNRRIYTSFLHTG 638

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   I         +R   IASEG  L+  D + IE R+LA  + +   
Sbjct: 639 TSTGRLSSKNPNLQNIPVKTEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPAL 698

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF+ G D++  T  + F     +  K  R I K +   L Y  G+   +K++ T  ++
Sbjct: 699 VAAFKAGADIHYETAKKIFG---EREAKAHRGIAKTINFGLIYGMGS---RKLSETLRIS 752

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  + +  A   +   ++F +       E A+E  +  T   R +    Q+     
Sbjct: 753 PKEAKGYIDSYFAS--FPTVKSFLK----AQEEFALEHGYTETLLGRRRYFEFQQAPEYQ 806

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           +    L +A    I  G A    K     +      + +L L+L     L++     
Sbjct: 807 KA-AYLREAV-NCIFQGSAADLIKLAMNEIRRRFAQEESLWLLLQVHDELIFEAPKE 861


>gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
 gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
          Length = 848

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/626 (14%), Positives = 191/626 (30%), Gaps = 154/626 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++      L         I    +    L  +N   + ++ V 
Sbjct: 326 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 385

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +     + + +E   +  +  K         +  P   E   +F  +    +   + +  
Sbjct: 386 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 431

Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +L   L+ K         E  L  +   +   G  VD      +         ++++++ 
Sbjct: 432 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 491

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF + GL +   T+T       VL   K+  P    +   R
Sbjct: 492 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 550

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A   +   +  L++ +  D ++                               H    
Sbjct: 551 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 578

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R   +  E    +  +D + IE RVLA ++ 
Sbjct: 579 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 638

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y        +   
Sbjct: 639 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 695

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        + T                                         + +K
Sbjct: 696 NLGITRKQAQQYIDT-----------------------------------------YFEK 714

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   E+ +  +   +     +  +RR +  +              + R+   R  
Sbjct: 715 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 758

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DIL   M+         K    ++L 
Sbjct: 759 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 799

Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652
           VHDE+V E P+++    + L   +M 
Sbjct: 800 VHDELVFEVPESELEQLNQLVKEVME 825


>gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4]
 gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4]
          Length = 887

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 96/660 (14%), Positives = 210/660 (31%), Gaps = 151/660 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVM--PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           F  G+ D   +        V+      K   ++ +      ++      LK     ++ I
Sbjct: 342 FCIGWGDD--QQIYVAEPEVVFASDDFKNWAKDKEAQKQVFDAKRTYVALKRQ---NVDI 396

Query: 91  HRWICTLVLARSN----GLPSALKAVGEALKLSSQKMEEGKELIARFCK---GETHECLY 143
                 ++LA            L  V    +      +E   +  +  K    E    +Y
Sbjct: 397 ASIDFDILLASYLLNTKDNSKDLSEVATEHEYYEVSSDES--VYGKGAKIAIPEEKTIIY 454

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
           D +     +A R+  +    +     E  ++ +  +  E  L  +   +   G  V+   
Sbjct: 455 D-HIARKIKAIRILSKQLGEN----LEKNEQTKLFNEMELPLSMVLAEMELTGVKVNDKR 509

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-- 261
              + +   +  T ++Q +  L  G   +    ++L   LF + G  +   T+T      
Sbjct: 510 LMEMKEEFAIRLTDIEQRVYELA-GEKFNLNSPKQLGVILFEKMGYPVIKKTKTGYSTAV 568

Query: 262 -VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   ++  P    + + R  A   +   +  L++ ++                     
Sbjct: 569 DVLEQLREQAPIVEHILDYRQIAKIQSTY-IEGLLKVIDK-------------------- 607

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGK 374
                     +  + H    Q I       + DP+   I         +R   + S EG 
Sbjct: 608 ----------KTGKIHTRYMQTIAQTGRLSSVDPNLQNIPIRLEEGRKIRQAFVPSHEGW 657

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGK 433
           ++  +D + IE RVL  ++ ++   +AF  G+D++ +T  + F + +P +V+ + R   K
Sbjct: 658 EIFASDYSQIELRVLGHVSDDKLLKEAFIEGQDIHSSTAMQVFGIGSPEEVSSEMRRRAK 717

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y        +     G++     H + T                         
Sbjct: 718 AVNFGIVYGISDYGLSQ---NLGISRKEAQHFIDTYF----------------------- 751

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                             +K+  V     ++ +  +   +     + ++RR +P +    
Sbjct: 752 ------------------EKYPGVKTYMEDIVREAKD--KGFVETLFQRRRYLPEI---- 787

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                     + R+   R     R+ +NT                   +Q  + DI+   
Sbjct: 788 ----------NSRNFNLRSF-AERTAINTP------------------IQGSAADIIKIA 818

Query: 614 MMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           M+   +          ++L VHDE++ E P  + E   +++  +M         +PLK +
Sbjct: 819 MIKMDQKLKESTMKATMLLQVHDELIFEAPKEEIEQLRALVVEVMEGAVE--LSVPLKVD 876


>gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
 gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
          Length = 905

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/563 (16%), Positives = 196/563 (34%), Gaps = 65/563 (11%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD  PV + DC    +  + ++E  +N +  IV +N       LK   N  I +      
Sbjct: 376 FDPTPV-VEDC---EINCKEIQEFFDNYNGEIVTYN-------LKNILNRGISVKNCKLD 424

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLYDRNKPNHREAW 154
           +++A         + V    +L  + +   E      +F K +              +  
Sbjct: 425 MMIAYHLISSQTKENV----ELPIEHLTGIELDNYADKFGKEKPENISAKEYGKYLCQ-- 478

Query: 155 RLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           R  G     D+     E    ++ L+  E  L  +  ++  +G  +D        + +  
Sbjct: 479 RTMGLLECYDILKEELEDRNLMKVLNEIEMPLIEILSSMEIKGIKIDPEYFSNYEKELGD 538

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
              KL +++     G   +    ++L   LF +  L     T+T         +KL    
Sbjct: 539 LIEKLQEKIYEEA-GEEFNINSPKQLAEILFFKLNLPPVKKTKTGLSTDEEVLEKLKVDG 597

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++                               L++   ++         P        
Sbjct: 598 AEIAK---------------------------AILEYRKLAKLKNTYVDAIPKLRD-EKD 629

Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H   +QI T      +SDP+   I         +R   +A +   L+  D + IE RV
Sbjct: 630 RVHTTFNQIGTTTGRLSSSDPNLQNIPVKTDEGIKIRQGFVAEKNSVLMGIDYSQIELRV 689

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKA 447
           LA ++G++   +A++   DL+  T  + F +    +V++++R I K +  ++ Y   A  
Sbjct: 690 LAQLSGDENLREAYQNSMDLHSLTARKIFELSDEEEVSREERIIAKTINFSIIYGKTAF- 748

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +A   G++    +  +       ++   + F + + E   +H   + F G      +
Sbjct: 749 --GLAKELGISQKEASEYID--RYFNQYPKVKGFEKEIVEFTEKHGYTETFFGR-----R 799

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           +     +S+   + ++  +    ++  G A    K+  + +    KD++ + L+L     
Sbjct: 800 RLIDGINSKNKNIKSQAERMAVNSVIQGTAAEIIKKVMIEIYKYIKDRDGISLLLQVHDE 859

Query: 568 LVYRDVGNNRSYLNTTTRQLTRE 590
           L++               ++ RE
Sbjct: 860 LIFEIEKEKLEMYREDIEKIMRE 882


>gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025]
 gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025]
          Length = 878

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 91/514 (17%), Positives = 173/514 (33%), Gaps = 135/514 (26%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +L+ L   E  L  +   +   G  V       + +  ++E   L QE+  L  G   +
Sbjct: 469 DQLDLLFEMELPLANVLAKMEIAGISVRKETLQDMERANEIELQALTQEIYDLA-GEAFN 527

Query: 233 SRCLEKLKTWLFLETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L   LF + GL L     T+T       VL      +P   ++   R  A   +
Sbjct: 528 INSPKQLGVILFEKLGLPLSATKKTKTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQS 587

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L ++++ DG++                               H    Q +T   
Sbjct: 588 TY-IIGLQDSISFDGKI-------------------------------HTRYLQDLTQTG 615

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R   +    +  L+ +D + IE RVLA ++G++  + A
Sbjct: 616 RLSSVDPNLQNIPVRLEQGRLIRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAA 675

Query: 402 FETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F+ G D++ +T  R F +  P  VT + R   K +   + Y         +A+  G++  
Sbjct: 676 FKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRK 732

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
              + ++T                                               R   +
Sbjct: 733 AAKNYIETYF--------------------------------------------ERYPGI 748

Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            N + +   +  + G    +  +RR++P +  +           + RS         R+ 
Sbjct: 749 KNYMDRVVREARDKGYVETLFHRRRELPDINSRNF---------NIRSFA------ERTA 793

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633
           +N+                   +Q  + DIL   M++  +A         ++L VHDEIV
Sbjct: 794 INSP------------------IQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIV 835

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P+ + E    ++   M S       +PL A+
Sbjct: 836 LEVPNAELEAIQKLVKETMESAIE--LSVPLVAD 867


>gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302]
          Length = 882

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 92/626 (14%), Positives = 191/626 (30%), Gaps = 154/626 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++      L         I    +    L  +N   + ++ V 
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +     + + +E   +  +  K         +  P   E   +F  +    +   + +  
Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465

Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +L   L+ K         E  L  +   +   G  VD      +         ++++++ 
Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF + GL +   T+T       VL   K+  P    +   R
Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A   +   +  L++ +  D ++                               H    
Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R   +  E    +  +D + IE RVLA ++ 
Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y        +   
Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVYGISDYGLSQ--- 729

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        + T                                         + +K
Sbjct: 730 NLGITRKQAQQYIDT-----------------------------------------YFEK 748

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   E+ +  +   +     +  +RR +  +              + R+   R  
Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DIL   M+         K    ++L 
Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833

Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652
           VHDE+V E P+++    + L   +M 
Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859


>gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 95/514 (18%), Positives = 171/514 (33%), Gaps = 135/514 (26%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++L+ L   E  L  +   +   G  V+      +    +V   +L +E+  L  G   +
Sbjct: 469 QQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELA-GQEFN 527

Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L   LF E GL LE    T+T       VL     + P   ++   R      +
Sbjct: 528 INSPKQLGIILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQS 587

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L +A+  DG                               + H    Q +T   
Sbjct: 588 TY-VVGLQDAILEDG-------------------------------KIHTRYVQDLTQTG 615

Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              ++DP+   I         +R   + S E   L+ +D + IE RVLA ++ ++  ++A
Sbjct: 616 RLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEA 675

Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F+ G D++ +T  R F +     VT + R   K +   + Y         +++  G+   
Sbjct: 676 FQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLSNNLGITRK 732

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T                                               R   +
Sbjct: 733 EAKAYIDTYF--------------------------------------------ERFPGI 748

Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            N +     +  + G    I ++RR++P +              + R+   R+    R+ 
Sbjct: 749 KNYMETIVREARDKGYVETIYKRRRELPDI--------------NSRNFNVRNF-AERTA 793

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +N+                   +Q  + DIL   M+N  KA         ++L VHDEIV
Sbjct: 794 INSP------------------IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835

Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
            E P  + E   +M+   M S  S    +PL  +
Sbjct: 836 LEVPVAELETVKAMVKETMESAIS--LSVPLIVD 867


>gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
 gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
          Length = 929

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 86/658 (13%), Positives = 182/658 (27%), Gaps = 162/658 (24%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
              V   A    +      +   +    +V++ AL +  V    H++       KA  + 
Sbjct: 405 TPQVTSVALSSREGAARAVELKGESG--EVVRRALADPTVPKAVHDA-------KAAMHA 455

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +P+       +L      P+         +L    +                       
Sbjct: 456 GLPLESVEHDTMLYEYLLDPTY-----TTYRLPDVVL-------------RRLNLKLAGT 497

Query: 147 KPNHREAWRLFGEYCKGDVT--VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
            P   +            V      ++++        ++ L  +   +   G  +D  + 
Sbjct: 498 LPEAADMTHRLTTKLHKLVEDGGLMKVYE------DIDRPLVTVLYAMEAAGVKLDCDVL 551

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTC 259
             ++  +  +   L +++  L+ G   +    ++L   LF +  L          T +T 
Sbjct: 552 AEMSTRLQRDADALARKIYGLS-GQEFNINSPKQLGDVLFNKLNLPKPVKYGKGKTISTA 610

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            V   R                                 ++    
Sbjct: 611 VDVLEGLAGEHEVPKLVLEYRQ-------------------------------FTKLKST 639

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGK 374
                P        R H    Q  T      + +P+   I     +   +R+  +A +G 
Sbjct: 640 YVDALPNLCHAGTGRLHTTFAQAATSTGRLSSVNPNLQNIPIRTELGREIRAAFVAEKGN 699

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ AD + IE R+LA  + ++  + A+    D++  T +  F V P  +  + R   K 
Sbjct: 700 VLLAADYSQIELRLLAHFSQDRLLVDAYNNDRDIHALTASEVFGVPPMMIDAEHRRRAKA 759

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y        +     G++       +++      + +  +  R    +  E   
Sbjct: 760 VNFGIVYGISPFGLSQ---QLGIDTKESKRYIES------YFERYSGVREWLNSVLEQVR 810

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
           +D  +                                     + +  + R +P ++ +  
Sbjct: 811 KDEKV-------------------------------------STLFGRIRPIPDIHSRN- 832

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                   P+ R          R+  NT                    Q  + D++   M
Sbjct: 833 --------PNLRGFA------ERTATNTPL------------------QGTAADLIKLAM 860

Query: 615 MNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           +         K    ++L VHDE+V E P  +      L      N      +PLK +
Sbjct: 861 IRIHRDLIERKLKTRMLLQVHDELVFEVPQAEVEEVRALVQDRMENVHPELTVPLKVD 918


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 89/516 (17%), Positives = 153/516 (29%), Gaps = 130/516 (25%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            E    LE     E  L  +   +   G  +D A        V  +  +L   +  L  G
Sbjct: 505 MEKDGLLELFRRLEMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQLDQLTAHVYELA-G 563

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              + R  ++L   LF   GL     T+    +T Q+ L       P    +        
Sbjct: 564 TQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQHPVVDSIL------- 616

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                   Q+    +         P    P+  R H   +Q  T
Sbjct: 617 ------------------------QYRKLEKMRSTYLDPLPRLVDPQ-GRIHTTFNQKAT 651

Query: 345 HLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S+P+   I     +   +RSC IA  G+ LV AD + +E RVLA ++ +   L
Sbjct: 652 ATGRLSSSNPNLQNIPVRGPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALL 711

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  +++ P QV+ DQR   K +   L                G+  
Sbjct: 712 EAFRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFGLI--------------YGMGA 757

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +K +                               T  +     + ++   + E
Sbjct: 758 QKLAQELKIS------------------------------TTQAKDFIARYFERLQGLKE 787

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            +  +  +  +                              +LP   S   +     R  
Sbjct: 788 FYEGVEASARK------------------HGFVTTLGGRRRLLPDINSASGQAAALARRQ 829

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIV 633
                                ++Q  + DI+   M+         +    ++L VHDE++
Sbjct: 830 A-----------------INTVIQGSAADIIKLAMLAVARDERLRELDARLLLQVHDELL 872

Query: 634 CETPDTDEFNASMLYHLMTSNPSWA---KGLPLKAE 666
            E P      A  L   +  +   A     +PL  +
Sbjct: 873 LEVPADAAEEAGALVARLMQDVCPAGKELSVPLLVD 908


>gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 101/621 (16%), Positives = 181/621 (29%), Gaps = 144/621 (23%)

Query: 51  PVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP- 106
            + P+  K     L + +     H++      ++A       +    C   LA     P 
Sbjct: 366 ELDPEDEKSFAAWLADNECPKAMHSAK---GPVEALAGRGWEVAGLTCDTELASYLLHPD 422

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GD 164
             + K         +  + EG+E         + + + D    +  E+        K  D
Sbjct: 423 RRSHKFDDAVRTHLNLTLGEGEE--------NSDQAMLDFGNDSSAESMERAVAVTKLAD 474

Query: 165 V-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           V     E     E L   E  +     ++   G  VD  +   L    D   T+      
Sbjct: 475 VMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAW 534

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G   +    ++L+  LF +  +     T++       +   L  +    F   +  
Sbjct: 535 E-AAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLE 593

Query: 284 SRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            R A+     ++ L++ +  DGR+  T                                 
Sbjct: 594 HRDAIKLRQTVDGLLKEIRDDGRVHTT-------------------------------YM 622

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
           Q I       + DP+   I         +R   +  EG + L+ AD + IE R++A ++G
Sbjct: 623 QTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSG 682

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF +G+D +  T +  F VAP  V+  QR+  K M   L Y   A         
Sbjct: 683 DQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKV 742

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           +                                                   K+      
Sbjct: 743 S-----------------------------------------------VGEAKELMAGYF 755

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR  ++   L +  +Q    G       RR                 LP           
Sbjct: 756 SRFGKVHEYLEEVVDQARRQGYTETLLGRRRY---------------LPDL--------- 791

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTV 628
                  T+T +  R+      L   I Q  + D++   M+   +          ++L V
Sbjct: 792 -------TSTNRQRRDMAERAALNAPI-QGSAADLIKLAMVATDQKLAEAGLTSRVLLQV 843

Query: 629 HDEIVCETPDTDEFNASMLYH 649
           HDE++ E    +E     +  
Sbjct: 844 HDELILEVTKDEEEKVRQIVT 864


>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
 gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
          Length = 946

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 95/536 (17%), Positives = 170/536 (31%), Gaps = 83/536 (15%)

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  V  V  N  ++  VL       I +     T+V++        L A          
Sbjct: 421 EDDSVLKVFQNGKYDLNVLARV---GIDVSPIEDTMVMSF------DLDAGRGEGMGGGH 471

Query: 122 KMEEGKELIARFCKGETHE---CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            M+E  E      K    +       +  P          EY   D  VT  +++ L+P 
Sbjct: 472 GMDELSER-HLLHKPLAFKDVCGTGKKAIPFGEVPLDRATEYAAEDADVTLRLYRMLKPR 530

Query: 179 SSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            S+E          + L  +   +   G  VD A    L++        L++E+  +  G
Sbjct: 531 LSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARLAKLSEEFATTTASLEKEIHEIA-G 589

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDL-------TETTCQRVLSSNKKLTPQAIQVFNNRM 281
              +    ++L   LF + G             T+ +    L+ ++   P A +V   R 
Sbjct: 590 QQFAVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQSVLENLAKDEAAKPIADKVLEWR- 648

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                           S+           Q  P   R H     
Sbjct: 649 ------------------------------HLSKLKSTYTDALQAQINPETGRVHTSYSL 678

Query: 342 IITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           +        ++DP+   I     I   +R   +  +G  L+ AD + IE R+ A MA   
Sbjct: 679 VGAQTGRLSSTDPNLQNIPIRTEIGRTIREAFVPEDGNVLLAADYSQIELRLAAHMADVD 738

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF  GED++  T    F     +VT+D RA  K +  A+ Y         +A    
Sbjct: 739 TLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGIS---RWGLAGRLE 791

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +    ++ T    + +   + +     E   E    +   G      K  + +  S+
Sbjct: 792 VEPDEAQDMIDT--YFQRFPGIQRYIMETLETVRERGYSETLFGR-----KTWFPRITSK 844

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK--NNLILMLPSGRSLVY 570
                    +A       G +    KR    ++   +D+   N+ ++L     LV+
Sbjct: 845 NQAERQGSERAAINAPIQGTSADIIKRAMARMLPALRDEGLGNVRMLLQVHDELVF 900



 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 18/189 (9%)

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ-TIENGKAIIARKRRDVPLVYMKK 553
           ED+   TA E   +  R   +R   +   +     +  +     +   + +D+   Y ++
Sbjct: 748 EDIHARTATEMFGEVTRDTRARAKTINFAILYGISRWGLAGRLEVEPDEAQDMIDTYFQR 807

Query: 554 DKNN---LILMLPSGRSLVYRDVGNNR---SYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                  ++  L + R   Y +    R       T+  Q  R+ +    +   I Q  S 
Sbjct: 808 FPGIQRYIMETLETVRERGYSETLFGRKTWFPRITSKNQAERQGSERAAINAPI-QGTSA 866

Query: 608 DILAEGMMNA------TKAGY-DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSW 657
           DI+   M            G   ++L VHDE+V E PD D E  + ++  +M     P+ 
Sbjct: 867 DIIKRAMARMLPALRDEGLGNVRMLLQVHDELVFELPDGDVEKASPIIERVMAEAALPAV 926

Query: 658 AKGLPLKAE 666
           +  +PL  +
Sbjct: 927 SLDVPLAVD 935


>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC]
 gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC]
          Length = 869

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 72/583 (12%)

Query: 28  VCVILFAFGF-DDHPVELWDCVH--DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
             + L       D  V   D  H  D V+   L+      D T   +N   +   LK   
Sbjct: 324 PSLTLMGVALASDDDVYYVDIEHALDDVLTP-LQYFFRREDTTFYGYNIKRDNHALKNA- 381

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIARFCKGETHECLY 143
            +            +A    L   L   G  +   +  M+ G      R+ K      L 
Sbjct: 382 GIH--------VHNIALDLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKEWGQLSLP 433

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------PLSSKEQELWYLDQTINDRGY 197
               P +   +  FG +      + + + + L+         + E  L  +  TI   G 
Sbjct: 434 IAKSPANPAQY--FGGFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERNGM 491

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +DV     L +I+  E   L  ++ +L  G   + +  ++L   L+ + GL   D   +
Sbjct: 492 PLDVEDLQELERILSEELAMLTDDIYTLA-GAPFNIKSPKQLSEVLYNKLGLKPIDKARS 550

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL +         ++                                 F    +  
Sbjct: 551 TKAEVLEALSGEHEIIEKILA-------------------------------FRAVEKLL 579

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-AS 371
                  P Q  P  SR H   +Q+ T        DP+   I         +R       
Sbjct: 580 STYVKALPRQVDPSTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCNTH 639

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +    + AD + IE R LA ++ ++    AFE+ ED++  T ++ F+V   +VTK QR  
Sbjct: 640 QNNYFLSADYSQIELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQ 699

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y   A     ++    ++++    L+      + + +   F         E
Sbjct: 700 AKTVNFGIIYGQQAY---GLSKILKISVSEAQKLIDA--YFDRYPEVARFINETVSQACE 754

Query: 492 HAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           +      +G   ER+   W +  +SR +        A    I+   A + +         
Sbjct: 755 NLRVKTLLGR--ERIIDNWTEFSNSRAAS----GRLAVNTRIQGSAAELIKLAMLQLSDA 808

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           ++K K    ++L     L++      +  + T  R +      
Sbjct: 809 LEKRKLKSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAMI 851


>gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus Y714s Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 85/544 (15%), Positives = 162/544 (29%), Gaps = 129/544 (23%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
              R  P+                 + R     L        L   EQ L  +   +   
Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +  +   ++Q +  L  G   +    ++L   LF +  L +   T
Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T         +KL P                    + +VE           L +    +
Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                         P   + H   +Q +T      +++P+   I         +R   + 
Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346

Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           SE    +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R
Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   +           +A    ++    A  +      E + ++    +   EN 
Sbjct: 407 RQAKAVNFGIVSGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + A +  ++ T                                        +RR +P +
Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R+   R     R  +NT                   +Q  + DI
Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L VHDE++ E P  +      L   +M    +    +P
Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565

Query: 663 LKAE 666
           LK +
Sbjct: 566 LKVD 569


>gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322]
 gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322]
          Length = 837

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 92/626 (14%), Positives = 191/626 (30%), Gaps = 154/626 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++      L         I    +    L  +N   + ++ V 
Sbjct: 315 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 374

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +     + + +E   +  +  K         +  P   E   +F  +    +   + +  
Sbjct: 375 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 420

Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +L   L+ K         E  L  +   +   G  VD      +         ++++++ 
Sbjct: 421 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 480

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           +   G   +    ++L   LF + GL +   T+T       VL   K+  P    +   R
Sbjct: 481 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 539

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A   +   +  L++ +  D ++                               H    
Sbjct: 540 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 567

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R   +  E    +  +D + IE RVLA ++ 
Sbjct: 568 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 627

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y        +   
Sbjct: 628 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQY-- 685

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+        + T                                         + +K
Sbjct: 686 -LGITRKQAQQYIDT-----------------------------------------YFEK 703

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +   E+ +  +   +     +  +RR +  +              + R+   R  
Sbjct: 704 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 747

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
              R+ +NT                   +Q  + DIL   M+         K    ++L 
Sbjct: 748 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 788

Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652
           VHDE+V E P+++    + L   +M 
Sbjct: 789 VHDELVFEVPESELEQLNQLVKEVME 814


>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
 gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
          Length = 875

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 104/669 (15%), Positives = 208/669 (31%), Gaps = 161/669 (24%)

Query: 21  ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68
           +  Y E   ++LF+       +      V   D             +V KE  E+ ++  
Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFESKEIKK 385

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + +++   RT+L+    L I  +     + LA     P   +   E   L+S+ + +   
Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               F K +    +           +++  E         +++ + L  +   EQ L   
Sbjct: 441 REDEFLKIKEVNIM--------PNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G+ VD  +   L +    E      E+ S++     +    ++L   LF +  
Sbjct: 485 LSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +   P   ++   R    +     +  L  A++ DG++ 
Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                                             +Q +T      +++P+   I      
Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631

Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V
Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT   R+  K +   + Y  G  +  +      +        +      E + +  
Sbjct: 692 PIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   EN  E A                              + + +  TI N     
Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVSTILN----- 767

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             +RR +  V                           R  +N+                 
Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794

Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
             +Q  + DI+   M+N  +          I+L VHDE++      + E   +++   M 
Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEME 852

Query: 653 SNPSWAKGL 661
                  GL
Sbjct: 853 QVLELKVGL 861


>gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
 gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
          Length = 878

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 170/553 (30%), Gaps = 142/553 (25%)

Query: 118 LSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-EIFKRL 175
           L S+K   GK+ +  F    ET   L+         A++    Y  GD+ + R E  +  
Sbjct: 425 LPSEKELVGKDELNLFSFTNETFRKLF---------AYKALIPYLAGDLLMERLEKQEMF 475

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
              +  E    Y    +  RG  VD       +  +     +L  E+     G   +   
Sbjct: 476 TLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKLQSRIDELHTEIIGYA-GKEFNINS 534

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF + GL     T+T       VL   K   P    +   R     ++     
Sbjct: 535 PKQLGVILFEDMGLSGGKKTKTGYSTSVDVLEKIKNDHPIIPAILEYRQLTKLNSTYA-Q 593

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L   ++ DGR+                               H   +Q IT      ++
Sbjct: 594 GLTAYISEDGRI-------------------------------HGTFNQTITATGRISST 622

Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           DP+   I     +   +R   I  +G   V AD + IE RVLA ++ +Q    AF    D
Sbjct: 623 DPNLQNIPMKLELGRLIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAFLNHVD 682

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++ TT +  F+V   QVT  QR   K +   + Y   A    +     G++         
Sbjct: 683 IHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVYGISAFGLSE---DLGISRK------- 732

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                    +A ++       +                           +      L + 
Sbjct: 733 ---------EAADYIEKYFATYK-------------------------NIKSF---LDRQ 755

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQ 586
            E+   +G       R               I  +P  RS  +       R  +N+    
Sbjct: 756 VEEAKADGVVRTMFGR---------------IRPVPELRSSNFMTRSFGERVAMNSP--- 797

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGY--DIVLTVHDEIVCETPDTD 640
                          +Q  + DI+   M        K G    ++L +HDE++ ET   +
Sbjct: 798 ---------------IQGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDELLVETAKDE 842

Query: 641 EFNASMLYHLMTS 653
                ++  +M  
Sbjct: 843 ---VDIVKEIMEK 852


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 86/557 (15%), Positives = 165/557 (29%), Gaps = 126/557 (22%)

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----------EPL 178
           L+    K +  E +         E      E     V +  ++  +L          E  
Sbjct: 409 LLRPSAKEQDLESILTDQLQMELEKTESEAETEVQQVRILFKLQDKLTDKLADKGLMELF 468

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +   +   G  VD  +   L+  ++ +   L      L  G   +    ++
Sbjct: 469 IDVELPLIPILAQMELNGIAVDQDMIQELSNKLEEKLDSLRSRAYELA-GEEFNLNSPKQ 527

Query: 239 LKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L   LF + GL +   T+T       VL   +        +   R         K     
Sbjct: 528 LGEILFEKLGLPVIKRTKTGYSTSASVLEKLEDKHEIVPLILEYR---------KYQ--- 575

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                              +         P    P+  R H   +Q++T      +++P+
Sbjct: 576 -------------------KLKSTYVDPLPDLINPKTERIHTSFNQLVTATGRLSSTEPN 616

Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I         +R   +A E K+L+  D + IE RVLA ++ ++  + A+  G+D++ 
Sbjct: 617 LQNIPIRTEEGRRIRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHT 676

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T A  F +  ++V+  QR   K +   + Y         +A    ++       +    
Sbjct: 677 KTAAEVFGLEASEVSYQQRRRAKAINFGIAYGISP---WGLAKDINVSKQEAEDYINQYL 733

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                       +   ++  + A E+ ++ T   R ++   + +S      +   +    
Sbjct: 734 NRYPK------VKEYMDHQIKQAKEEGYVTTILNR-RRYLPEINSSNYHRRSFGERMAIN 786

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
           T   G A                     + ML S R L  R++                 
Sbjct: 787 TPIQGSAA----------------DIMKLAMLESARVLDERELDTK-------------- 816

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC-ETPDTDEFNASMLYH 649
                                            I+L VHDE++    P+  E    ++  
Sbjct: 817 ---------------------------------ILLQVHDELIFEVPPEELEEVQQVIKA 843

Query: 650 LMTSNPSWAKGLPLKAE 666
            M         +PLK +
Sbjct: 844 EMEDVIE--LDVPLKVD 858


>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
          Length = 907

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 95/633 (15%), Positives = 185/633 (29%), Gaps = 152/633 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
           L + D     H +      +         +        LA     P   +      +L+ 
Sbjct: 386 LADPDNPKALHEAKL---AMHDLAGRGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRY 442

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-------TVTREI 171
             +++             E  +     N     +            V           ++
Sbjct: 443 LRRELRAET--------PEQEQFSLLDNVDEVDKQAIQTLILRARAVVDLAAALDAELDL 494

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                 L   E  +  +   +   G   D+ L   L      +     +   ++  G   
Sbjct: 495 IDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGDQIRDAAEAAYAVI-GKQI 553

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV--- 288
           +    ++L+  LF E G+     T+T       + + L  +    F   +   R      
Sbjct: 554 NLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKTEHPFLQHLLTHRDVTRLK 613

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           + ++ L+ A+ +DGR+  T                                +Q I     
Sbjct: 614 VTVDGLLNAVAADGRIHTT-------------------------------FNQTIATTGR 642

Query: 349 SITSDPDPLQII-----SDCVRSCVIAS----EGKKLVVADLAGIEARVLAWMAGEQWKL 399
             +++P+   I         +R   +         +L+ AD + IE R++A ++ ++  +
Sbjct: 643 LSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLI 702

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF TGEDL+    +R+F +    +T + R   K M   L Y   A     +A+   ++ 
Sbjct: 703 EAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAY---GLATQLKIST 759

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                          K    Q  +R   
Sbjct: 760 EEA--------------------------------------------KLQMEQYFARFGG 775

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           + + L    EQ  ++G       RR                 LP                
Sbjct: 776 VRDYLMDVVEQARKDGYTSTVLGRRRY---------------LPE--------------- 805

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           L+++ RQ+ RE      L   I Q  + DI+   M+   K+         ++L VHDE++
Sbjct: 806 LDSSNRQI-REAAERAALNAPI-QGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELL 863

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            E    +      +    M S  ++   +PL+ 
Sbjct: 864 FEVAIGEREQIEAMVREQMGS--AYPLDVPLEV 894


>gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 101/621 (16%), Positives = 181/621 (29%), Gaps = 144/621 (23%)

Query: 51  PVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP- 106
            + P+  K     L + +     H++      ++A       +    C   LA     P 
Sbjct: 357 ELDPEDEKSFAAWLADNECPKAMHSAK---GPVEALAGRGWEVAGLTCDTELASYLLHPD 413

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GD 164
             + K         +  + EG+E         + + + D    +  E+        K  D
Sbjct: 414 RRSHKFDDAVRTHLNLTLGEGEE--------NSDQAMLDFGNDSSAESMERAVAVTKLAD 465

Query: 165 V-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           V     E     E L   E  +     ++   G  VD  +   L    D   T+      
Sbjct: 466 VMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAW 525

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               G   +    ++L+  LF +  +     T++       +   L  +    F   +  
Sbjct: 526 E-AAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLE 584

Query: 284 SRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            R A+     ++ L++ +  DGR+  T                                 
Sbjct: 585 HRDAIKLRQTVDGLLKEIRDDGRVHTT-------------------------------YM 613

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
           Q I       + DP+   I         +R   +  EG + L+ AD + IE R++A ++G
Sbjct: 614 QTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSG 673

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF +G+D +  T +  F VAP  V+  QR+  K M   L Y   A         
Sbjct: 674 DQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKV 733

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           +                                                   K+      
Sbjct: 734 S-----------------------------------------------VGEAKELMAGYF 746

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           SR  ++   L +  +Q    G       RR                 LP           
Sbjct: 747 SRFGKVHEYLEEVVDQARRQGYTETLLGRRRY---------------LPDL--------- 782

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTV 628
                  T+T +  R+      L   I Q  + D++   M+   +          ++L V
Sbjct: 783 -------TSTNRQRRDMAERAALNAPI-QGSAADLIKLAMVATDQKLAEAGLTSRVLLQV 834

Query: 629 HDEIVCETPDTDEFNASMLYH 649
           HDE++ E    +E     +  
Sbjct: 835 HDELILEVTKDEEEKVRQIVT 855


>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
 gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
 gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
 gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
 gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
 gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
          Length = 911

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 95/633 (15%), Positives = 185/633 (29%), Gaps = 152/633 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
           L + D     H +      +         +        LA     P   +      +L+ 
Sbjct: 390 LADPDNPKALHEAKL---AMHDLAGRGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRY 446

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-------TVTREI 171
             +++             E  +     N     +            V           ++
Sbjct: 447 LRRELRAET--------PEQEQFSLLDNVDEVDKQAIQTLILRARAVVDLAAALDAELDL 498

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                 L   E  +  +   +   G   D+ L   L      +     +   ++  G   
Sbjct: 499 IDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGDQIRDAAEAAYAVI-GKQI 557

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV--- 288
           +    ++L+  LF E G+     T+T       + + L  +    F   +   R      
Sbjct: 558 NLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKTEHPFLQHLLTHRDVTRLK 617

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           + ++ L+ A+ +DGR+  T                                +Q I     
Sbjct: 618 VTVDGLLNAVAADGRIHTT-------------------------------FNQTIATTGR 646

Query: 349 SITSDPDPLQII-----SDCVRSCVIAS----EGKKLVVADLAGIEARVLAWMAGEQWKL 399
             +++P+   I         +R   +         +L+ AD + IE R++A ++ ++  +
Sbjct: 647 LSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLI 706

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF TGEDL+    +R+F +    +T + R   K M   L Y   A     +A+   ++ 
Sbjct: 707 EAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAY---GLATQLKIST 763

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                          K    Q  +R   
Sbjct: 764 EEA--------------------------------------------KLQMEQYFARFGG 779

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           + + L    EQ  ++G       RR                 LP                
Sbjct: 780 VRDYLMDVVEQARKDGYTSTVLGRRRY---------------LPE--------------- 809

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           L+++ RQ+ RE      L   I Q  + DI+   M+   K+         ++L VHDE++
Sbjct: 810 LDSSNRQI-REAAERAALNAPI-QGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELL 867

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            E    +      +    M S  ++   +PL+ 
Sbjct: 868 FEVAIGEREQIEAMVREQMGS--AYPLDVPLEV 898


>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
 gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
          Length = 875

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 105/669 (15%), Positives = 207/669 (30%), Gaps = 161/669 (24%)

Query: 21  ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68
           +  Y E   ++LF+       +      V   D             +V KE  E  ++  
Sbjct: 326 LYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFEGKEIKK 385

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + +++   RT+L+    L I  +     + LA     P   +   E   L+S+ + +   
Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               F K +    +           +++  E         +++ + L  +   EQ L   
Sbjct: 441 REDEFLKIKEVNIM--------PNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G+ VD  +   L +    E      E+ S++     +    ++L   LF +  
Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +   P   ++   R    +     +  L  A++ DG++ 
Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                                             +Q +T      +++P+   I      
Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631

Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V
Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT   R+  K +   + Y  G  +  +      +        +      E + +  
Sbjct: 692 PIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   EN  E A                              + + +  TI N     
Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVSTILN----- 767

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             +RR +  V                           R  +N+                 
Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794

Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
             +Q  + DI+   M+N  K          I+L VHDE++      + E   +++   M 
Sbjct: 795 --IQGSAADIIKLAMVNVHKKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEME 852

Query: 653 SNPSWAKGL 661
                  GL
Sbjct: 853 QVLELKVGL 861


>gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
 gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
          Length = 873

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 93/621 (14%), Positives = 178/621 (28%), Gaps = 134/621 (21%)

Query: 31  ILFAFGF-DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++  F   ++      D  +     Q  +  + +  +    ++       + A     + 
Sbjct: 332 LIVGFAIYNNSEAYYIDIENAIKC-QNFQNFINDESIEKYGYDIK---KCINAAKWHGLE 387

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           I  ++  L LA     PS    +    +          E +  + KG   +        +
Sbjct: 388 IKNYVFDLQLASYILNPSLKDEIRSVCEYYDYYDVLYDEEV--YGKGAKKKIPETTAIAD 445

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           H           K       +   + +     E  +  +  ++  +G  +D  +   L  
Sbjct: 446 HLIKQAKAIYVLKDKAIEKLKQENQFDLYKDVEMPVAKILASMEYQGAKIDKDVLKDLEN 505

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSN 266
               E   L++E+  L      +    ++L   LF + GL     T+T       +L+  
Sbjct: 506 QFGKEIEVLEKEIHQLA-NKNFNIASPKQLGEVLFEDLGLPNGKKTKTGYSTSVDILNKL 564

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           K + P   +V                                Q+   S+           
Sbjct: 565 KDVHPIINKVL-------------------------------QYRTLSKLYSTYIIGLQE 593

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381
           Q      + H   +Q +T      ++DP+   I         +R   I      LV  D 
Sbjct: 594 QIF-VDGKIHTIYNQALTQTGRLSSTDPNLQNIPVKTAEGKLIRKAFIPEYDY-LVSFDY 651

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA +A  +  +KAF   +D++  T +  F V   +V    R   K +   + Y
Sbjct: 652 SQIELRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNFGIIY 711

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                    +A   G+ +N                 A NF +   EN+PE          
Sbjct: 712 GMSDF---GLAEQVGVPVNE----------------ARNFIKRYFENYPE---------- 742

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
               +K                                         +   K    +  M
Sbjct: 743 ----IKTYMDN-----------------------------------NIEFCKKNGYVTTM 763

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618
           L   R   +    N ++Y+     +  R            +Q  + DI+   M+      
Sbjct: 764 LNRKR---FIREINEKNYMRQELGK--RLAMNSP------IQGSAADIIKVAMIKVDELF 812

Query: 619 ---KAGYDIVLTVHDEIVCET 636
                   ++L VHDE++ + 
Sbjct: 813 KKHNLKSKMILQVHDELIFDV 833


>gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008]
 gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008]
          Length = 873

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 83/535 (15%), Positives = 154/535 (28%), Gaps = 132/535 (24%)

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           L  RF          D    +  +A     E             +      + E  L + 
Sbjct: 426 LTERFSVPSIASGSVDVECVSMVKALLAMNEAACESARRE----ELWSLYETIELPLIHT 481

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  +D             E  ++ QE+  L  G   +    ++L   LF +  
Sbjct: 482 LVVMEKNGIYIDTEKLAETTTRFKEELAQVQQEIYELA-GENFNINSPKQLGVILFEKMN 540

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +  +P   ++                             
Sbjct: 541 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILA--------------------------- 573

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
               +   ++               +  R H   +Q++T      +SDP+   I      
Sbjct: 574 ----YRSVAKLVSTYCEGLAVLINDKTRRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 629

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R+      G   LV AD + IE R+LA ++G++  +KAF  G+D++  T A     
Sbjct: 630 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 689

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           A   VT ++R+  K +   + Y         ++   G+      + +             
Sbjct: 690 AQDDVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 737

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                              SR  ++   + +  ++  E GK   
Sbjct: 738 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 762

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598
              R+                 LP   S  + R     R+ +NT                
Sbjct: 763 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 792

Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASML 647
              +Q  + DI+   M    +          ++L VHDE+V E  +++      L
Sbjct: 793 ---IQGTAADIIKLAMNQMEQKLEEQNFKSRLLLQVHDELVLEVVNSELEAIEEL 844


>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
 gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
          Length = 875

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 106/669 (15%), Positives = 205/669 (30%), Gaps = 161/669 (24%)

Query: 21  ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68
           +  Y E   ++LF+       +      V   D             +V KE  E+ ++  
Sbjct: 326 LYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEIFESKEIKK 385

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + +++   RT+L+    L I  +     + LA     P   +   E   L+S+ + +   
Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               F K +    + +              E    D  +   ++K        EQ L   
Sbjct: 441 REDEFLKIKEVNIMPN---------LYKVLEEKIKDQDMEELLYK-------VEQPLTET 484

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G+ VD  +   L +    E      E+ S++     +    ++L   LF +  
Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +   P   ++   R    +     +  L  A++ DG++ 
Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                                             +Q +T      +++P+   I      
Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631

Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V
Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT   R+  K +   + Y  G  +  +      +        +      E + +  
Sbjct: 692 PIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   EN  E A                              + + +  TI N     
Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVSTILN----- 767

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             +RR +  V                           R  +N+                 
Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794

Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
             +Q  + DI+   M+N  +          I+L VHDE++     D  E   +++   M 
Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVEKEME 852

Query: 653 SNPSWAKGL 661
                  GL
Sbjct: 853 QVLELKVGL 861


>gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
          Length = 888

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 93/502 (18%), Positives = 165/502 (32%), Gaps = 129/502 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-SSRCLEKLK 240
           E +L Y+   +   G+ VD+     L    D     L + +          +    ++L 
Sbjct: 488 EHKLMYVLGDMELEGFKVDLNTLEELGVDFDKRVEDLTRNIREAAGEDEDFNVNSTKQLG 547

Query: 241 TWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+T       VL   +   P    + + R   S+     +  LV  
Sbjct: 548 HVLFDKMGLPALKKTKTGYSTNIEVLEKLRDHHPIIPMIIDLRQ-ISKLNSTYVKGLVSL 606

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++ D                               ++ H   +Q IT      +S+P+  
Sbjct: 607 IDKD------------------------------TNKIHSTFNQTITTTGRISSSNPNLQ 636

Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   I+S E   LV AD + IE RVLA ++ ++  + +F+  ED++  
Sbjct: 637 NIPVRTEEGRIIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKNNEDIHTR 696

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  FNV   +VT + R+  K +   + Y         +A    +        + T   
Sbjct: 697 TASEVFNVPIDEVTSEMRSSAKAVNFGIVYGISDF---GLAKGLSIARKDAKEYIDT--- 750

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                     C++M++     A E  ++ T                              
Sbjct: 751 --YLSKYPGVCKYMEDIVVT-AKEQGYVTTMFN--------------------------- 780

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                     +RR +  +Y               ++   R  G  R+ LNT         
Sbjct: 781 ----------RRRYINEIYS--------------KNFNVRSFGE-RTALNTP-------- 807

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNA 644
                     +Q  + DI+   M+N        K    ++L VHDE++ +TP  + E   
Sbjct: 808 ----------IQGSAADIIKLAMVNVQNELNKRKLKAKLILQVHDELIIDTPMEEVEEVK 857

Query: 645 SMLYHLMTSNPSWAKGLPLKAE 666
           ++L   M +        PLKA+
Sbjct: 858 ALLKDKMENVVD--MSCPLKAD 877


>gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702]
          Length = 901

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 99/634 (15%), Positives = 159/634 (25%), Gaps = 170/634 (26%)

Query: 45  WDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
            D        +    A L +       H++  E   L       + +        LA   
Sbjct: 386 IDLTDQDPADEATLRAWLADRGAPKWVHDAKAEWHKLN---GSGLVLAGVEQDTALAAYL 442

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             P  L+    A  +                               H       G  C  
Sbjct: 443 LRPD-LRTGDLADVVQRHV--------------------------GHEITADAPGAVCAQ 475

Query: 164 DVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
               T E+   L P              E  L  +   +   G  VD A    L+    V
Sbjct: 476 ---ATAELVAALTPELAEIGAMELYLDLEVPLATVLAKMEATGISVDAASLRDLSDEYGV 532

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           +      E  ++      +    ++L+  LF    L     T+T         +KL    
Sbjct: 533 QIEAEIAEARTIAGDDTLNLSSPKQLQKVLFETLELPKTKKTKTGYSTAAGELEKLAASH 592

Query: 274 IQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
              F   + A R        ++ L+EA+  DGR+  T                       
Sbjct: 593 PHPFLGHLMAHREYQKMKSTIDGLIEAVADDGRIHTT----------------------- 629

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384
                    +Q         +SDP+   I         +R       G   L+ AD + I
Sbjct: 630 --------FNQRGAATGRLSSSDPNLQNIPVRTEAGRRIRGAFRVGTGYATLITADYSQI 681

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RV+A ++ +   ++A+  GEDL+    ++ F+V    VT + R   K M   L Y   
Sbjct: 682 EMRVMAHLSQDPGLIEAYRAGEDLHNYVGSKVFDVPVEHVTPELRRRVKAMSYGLVYGLS 741

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A    +    +                                                 
Sbjct: 742 AFGLSQQLRIS-----------------------------------------------AG 754

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             K+       R   +   L +      E G       RR                 LP 
Sbjct: 755 EAKQIMDNYFERFGGVKRYLDEVVAHAKETGYTETLYGRRRY---------------LPE 799

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619
             S                                  +Q  + DI+   M+         
Sbjct: 800 LNSSNRVAAEAAGRAA-----------------LNAPIQGTAADIIKRAMLRVDAEFTRR 842

Query: 620 -AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651
                ++L VHDE+V E  D + +    +L   M
Sbjct: 843 DLASRVLLQVHDELVVEVVDGEQDVVTEILREQM 876


>gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
          Length = 975

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 100/621 (16%), Positives = 180/621 (28%), Gaps = 91/621 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------Q 55
           L ID ET S           +A    ++  +  +                P        +
Sbjct: 397 LAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVIE 446

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113
            L++ LE++ +  V HN  F+  VL+   +  + +       ++A               
Sbjct: 447 TLRDVLESSAIEKVGHNLKFDVIVLR---SAGVQLGGITMDTMVADYLLNSGGRNHGLDD 503

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A +         K+LI    K  T + +                 Y   DV V   +  
Sbjct: 504 LAQRRLDHTNLSIKDLIGTGKKQITMDQVPV----------DDVSPYACEDVDVPIRLAP 553

Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L                E  L  +   +   G  V+      +++  D +   L   + 
Sbjct: 554 TLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALVF 613

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
           S   G   +    ++L   LF E GL +   T+T       VLS        A  V    
Sbjct: 614 S-AAGHEFNLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVL--- 669

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                       Q+  A++         P     +  R H    
Sbjct: 670 ----------------------------QYRQATKLKNTYIDALPQLICDKTGRVHTSFR 701

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
           Q +       +S+P+   I         +R+   A  EG  L+ AD + IE RVLA  +G
Sbjct: 702 QDVAATGRLSSSEPNLQNIPIRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSG 761

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + A+    D++    A    +  ++VT D R I K +   + Y         +A T
Sbjct: 762 DEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPF---GLAKT 818

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQK 513
            G++ +     ++     + +   E F                 +G   E +  +   + 
Sbjct: 819 LGISNDEARDYIE--LYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKL 876

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRD 572
                    E  +        G A    K   + +    K  +    L+L     L+   
Sbjct: 877 PESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLES 936

Query: 573 VGNNRSYLNTTTRQLTREYTY 593
                  L+   R+       
Sbjct: 937 PDEELDALSDMIREAMTSVME 957



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 96/276 (34%), Gaps = 34/276 (12%)

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG-LNLNTFAHLVKT 468
             T   S +    Q    +   GK +  A  +  G + +  + +    + L   AH    
Sbjct: 705 AATGRLSSSEPNLQNIPIRTEQGKAIRAA--FTAGREGWSLLGADYSQIELRVLAHYSGD 762

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
            +    + D  +    +      + IE+  + +   R+ K           ++ +     
Sbjct: 763 EALIGAYHDDADIHTRVAAEV--NGIEESEVTSDLRRIAKTI-----NFGIVYGQSPFGL 815

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKN---NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
            +T+     I   + RD   +Y ++       ++  L   R+  Y      R       R
Sbjct: 816 AKTLG----ISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVR 871

Query: 586 QL-------TREYTYGGKLTENI-VQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
            L        R  T   ++  N+ +Q  + D++   M+              ++L +HDE
Sbjct: 872 DLAKLPESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDE 931

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           ++ E+PD + +  + M+   MTS       +PLK +
Sbjct: 932 LLLESPDEELDALSDMIREAMTSVME--LDVPLKVD 965


>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
 gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
          Length = 928

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 103/631 (16%), Positives = 199/631 (31%), Gaps = 137/631 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  +  N  ++ TVL+    ++I  +    T+V++       +L       
Sbjct: 403 LKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYD--DTIVMSFDLDAGQSLAG----- 454

Query: 117 KLSSQKMEEGKEL-IARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKR 174
                 M+E   + +   C      C   R++ +  E       EY   D  VT  +++ 
Sbjct: 455 ----HGMDEAARVHLNHVCISFKDVCGTGRSQISFAEVPLDKATEYAAEDADVTLRLWRL 510

Query: 175 LEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +   + E          + L  +   +   G  VD      L+         L+ E+ +
Sbjct: 511 FKSRIANEGATRVYELVDRPLVGVIAKMEHEGIKVDREALSRLSAEFTAGIAALEGEIHA 570

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRA 283
           L  G   +    ++L   LF + G       ++      ++  ++L  Q  ++       
Sbjct: 571 LA-GQPFAIGSTQQLGAILFDKMGYKGGRKGKSGAYSTDVTILEQLKAQGAEIA------ 623

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                             G++   L +   S+           Q      R H       
Sbjct: 624 ------------------GKV---LDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLSG 662

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                  ++DP+   I         +R   +A  G  ++ AD + IE R+ A MA     
Sbjct: 663 AQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPAL 722

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF  GED++  T  + F     +V +D R   K +  A+ Y  G   +  +A    ++
Sbjct: 723 KEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILY--GISRW-GLAGRLEIS 775

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +                +A++      E  P  ++                        
Sbjct: 776 AD----------------EAQDMISRYYERFPGISL------------------------ 795

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                +    E+           + R        +      +  P      +   G  R+
Sbjct: 796 ----YITDTIEKA----------RSRGYTETLFGRKTWFPRIKAPV----QHERQGAERA 837

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
            +N   +         G   + I +A++R   A       +    ++L VHDE+V E P+
Sbjct: 838 AINAPIQ---------GTSADIIKRAMARMGPALAAEGLHRV--KMLLQVHDELVFELPE 886

Query: 639 TD-EFNASMLYHLMTSNPSWA--KGLPLKAE 666
            D E   +++  +M           +PL  E
Sbjct: 887 GDVEHAGAVIRRVMEGAAEPIVKLSVPLGVE 917


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
          Length = 915

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D   V H++      +
Sbjct: 362 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 418

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 419 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 470

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 471 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 530

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 531 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 589

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 590 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 643

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 644 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 678

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 679 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 738

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 739 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 766

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 767 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 810

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 811 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 839

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 840 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 887


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
          Length = 910

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D   V H++      +
Sbjct: 357 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 413

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 414 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 465

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 466 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 525

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 526 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 584

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 585 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 638

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 639 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 673

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 674 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 733

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 734 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 761

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 762 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 805

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 806 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 834

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 835 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 882


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 88/527 (16%), Positives = 163/527 (30%), Gaps = 138/527 (26%)

Query: 165 VTVTREIFKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           V +   ++  L  L          ++ E+ L  +   +   G+ VD        + ++ +
Sbjct: 426 VILLERLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESK 485

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTP 271
              L++++  +  G   +    ++L   LF +  L +   T+T       VL        
Sbjct: 486 ILNLEKQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               + + RM                       +G LQ                    P 
Sbjct: 545 IVPLILDYRMYTKILTTY--------------CQGLLQA-----------------INPS 573

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H    Q  T      +SDP+   I         +R   I  EG  L+ AD + IE 
Sbjct: 574 SGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIEL 633

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA ++ ++  + AF+   D++  T A  F V    VT + R+  K +   + Y     
Sbjct: 634 RILAHISEDERLINAFKNNVDIHSQTAAEIFGVDIDDVTPEMRSQAKAVNFGIVYGISDY 693

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +A    ++    A  +                    E +P+       +    + +
Sbjct: 694 ---GLARDIKISRKEAAEFIN----------------RYFERYPK-------VKEYLDNI 727

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            K  R+ +  V  L+N                   ++R +  +                 
Sbjct: 728 VKFARE-NGYVLTLFN-------------------RKRYIKDINSTNR------------ 755

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----- 621
                   N RSY         R            +Q  + DI+   M+   +       
Sbjct: 756 --------NTRSY-------AERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNL 794

Query: 622 -YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
              I+L VHDE++ E P +  +    ++   M +    A  +PL  E
Sbjct: 795 KAKIILQVHDELLIEAPYEEKDIVKRIVKTEMENAV--ALKVPLVVE 839


>gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
 gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
          Length = 905

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 94/507 (18%), Positives = 158/507 (31%), Gaps = 128/507 (25%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           +E ++  E  +  +  T+   G  VD+   H L    D +     Q+      G   +  
Sbjct: 498 IELMAELELPIVEVLATMEQAGIAVDLDALHELEADYDAQVVAAQQDAWDAIGGEQVNLG 557

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KL 291
             ++L+  LF   GL     T+T       +   L+ +A   F + +   R A      +
Sbjct: 558 SPKQLQVVLFETLGLPKTKKTKTGYTTDAEAIADLSEKAPHPFLDALLRHRDASKLRSTV 617

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++++  DGR+  T                                 Q I       +
Sbjct: 618 QGLIKSIGDDGRIHTT-------------------------------YQQTIAATGRLSS 646

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +DP+   I         +R   +  EG   L+ AD + IE RV+A ++G++  ++AF  G
Sbjct: 647 TDPNLQNIPIRTESGRRIRRVFVVGEGYDCLMSADYSQIEMRVMAHLSGDEGLIQAFNDG 706

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+    +R F V P++VT + RA  K M   L Y   A    K    +          
Sbjct: 707 EDLHRFVGSRVFGVEPSEVTSEMRAKVKAMSYGLAYGLSAFGLSKQLRISTAEAQ----- 761

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                     +       R   + + L 
Sbjct: 762 ------------------------------------------RLMDGYFERFGGVRDYLR 779

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           Q  +     G       RR                 LP                L +  R
Sbjct: 780 QIVDDARATGYTETMMGRRRY---------------LP---------------DLTSDNR 809

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT 639
           Q  R+      L   I Q  + DI+ + M+   +A         ++L VHDE++ E    
Sbjct: 810 Q-RRDMAERMALNAPI-QGSAADIMKKAMLGVDEALRAANLRSRVLLQVHDELIVEVGAG 867

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKA 665
           +      +    M +    A  +PL  
Sbjct: 868 ERDEVERIVREQMGAAADLA--VPLDV 892


>gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266]
          Length = 931

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D   V H++      +
Sbjct: 378 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 434

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 435 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 486

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 487 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 546

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 547 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 605

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 606 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 659

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 660 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 694

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 695 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 754

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 755 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 782

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 783 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 826

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 827 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 855

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 856 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 903


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 103/663 (15%), Positives = 214/663 (32%), Gaps = 162/663 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60
           +D E+    D    G+   A++  ++ F+F  +++        H        +   L+ A
Sbjct: 313 LDKESIIAFDTETTGLD--AKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQI--SLQSA 368

Query: 61  LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  ++      + HN  ++  +++  FNL +P   +  T++LA        +     AL
Sbjct: 369 KKAIELIFNHFVIGHNLKYDFKIIQNNFNLTLPQE-YADTMILAWLKNPSLRVNMDDLAL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+    KGE    +                +Y   D  +T   +    
Sbjct: 428 RLFNYETLHFESLVK---KGENFTSV----------ELEKACKYAAEDAYITLRFYLYFL 474

Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LE PL       E +   +   I + G  +D      L +  + E   L +E+  L  
Sbjct: 475 KNLETPLLELAKTCEFDFIKIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEIYILCE 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL++     P   ++ + R   +
Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYR-ELA 592

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                             + SR +    Q  T
Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC +A EG   +  D + IE R+LA  + ++  L
Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKNYKSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++V T    F     +   + R++ K +   L Y  G   ++ ++    +  
Sbjct: 684 NAFANDEDIHVRTAMMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +                                              K    +     + 
Sbjct: 737 SLA--------------------------------------------KSYIEKYFENFTS 752

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +     +   +  +NG                        +   SGR          + Y
Sbjct: 753 IKKYFEKIKNEAKQNG-----------------------FITTLSGR----------KRY 779

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + D++   M+   K   +   ++L +HDE++ E 
Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839

Query: 637 PDT 639
            D 
Sbjct: 840 KDK 842


>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 867

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 96/547 (17%), Positives = 157/547 (28%), Gaps = 141/547 (25%)

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRG 196
               R+     GE       VT  ++ RL     +          E     +   +   G
Sbjct: 421 LEEDRDLLTDVGEQLGHRAWVTVALYPRLRQDLERNHLQDVLDGIEIPTQEILARMEIAG 480

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             +D ++ + L    +    +   E  + + G   +    ++L+T LF E  +     T+
Sbjct: 481 IAIDQSVLNELITEFEAAAQQSASEAYA-SIGHEVNLNSPKQLQTVLFDELNMPKTKRTK 539

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV---EAMNSDGRLRGTLQFLGA 313
           T       S   L  +    F   + A R       T+V   + +  DGR+  T      
Sbjct: 540 TGYTTDADSLADLLVKTQHPFLEHLLAHRDRTKLKQTVVGLQKVVADDGRIHTT------ 593

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +RS  
Sbjct: 594 -------------------------YLQTVAATGRLSSKDPNLQNIPVRTDAGRRIRSVF 628

Query: 369 IA---SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
            A      + L+  D + IE R++A ++G++  ++AF+ GEDL+     + F V    VT
Sbjct: 629 QAAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIEDVT 688

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
             QR+  K M   L Y   A     ++   G+     + L                    
Sbjct: 689 DQQRSKVKAMSYGLVYGLSAY---GLSRQLGIPTGEASAL-------------------- 725

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                        +R   +   L Q  E+    G       RR 
Sbjct: 726 ------------------------MDDYFARFGAVKEYLDQVVEEARGRGYTETMYGRRR 761

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                           LP  RS                 R+  RE      L   I Q  
Sbjct: 762 Y---------------LPQLRS----------------DRRQLREMAERAALNAPI-QGS 789

Query: 606 SRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+   M     A         ++L VHDEI+ E    +      L    M+      
Sbjct: 790 AADIMKIAMKRVDDALREAELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQAAD-- 847

Query: 659 KGLPLKA 665
             +PL  
Sbjct: 848 LSVPLDV 854


>gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
 gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
          Length = 903

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 193/621 (31%), Gaps = 155/621 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKELIARFC 134
           +   L A          +      A +  G   ++  V   + L++     G+     F 
Sbjct: 378 DTAALGAWLADPAAPKAFHEAKWAAHALRGQGFSIAGVTTDIGLAAYIARPGQ---RSFQ 434

Query: 135 KGETHECLYDRNK-PNHREAWRLFGEYCKGD-----------VTVTREIFKRLEPLSSK- 181
             +       R   P+     +L     + D               RE+ + L+ + +K 
Sbjct: 435 LPDLAVRYLRRQLGPDDSGQKQLSLLDAEQDDNAEANGAVSEAAAIRELGEALDDVLAKA 494

Query: 182 ---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L ++   + + G  VD      L+        +  +   ++  G   +
Sbjct: 495 GSADLLHTMELPLTFVLGAMEEAGIAVDQDALAGLHADFSARVQQAAESAYAVI-GKEIN 553

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---L 289
               ++L+  LF E G+     T+T       + + L  +    F + +   R A     
Sbjct: 554 LGSPKQLQVVLFDELGMPKTKKTKTGHTTDADALQWLFERTEHPFLSHLLEHRDATRLMT 613

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
               L++A+  DGR+  T                                 Q +      
Sbjct: 614 TAQGLIKAVGPDGRIHTT-------------------------------FRQDVAATGRL 642

Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403
            ++DP+   I      +  +R   +  EG + L+ AD + IE R++A ++G++  ++AF 
Sbjct: 643 SSTDPNLQNIPVRTEEARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDEGLIEAFR 702

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           TGEDL+    +R+F V   QV  + R   K M   L Y   A    +    +G       
Sbjct: 703 TGEDLHNFVASRAFGVPIDQVGAELRRRVKAMSYGLAYGLSAFGLAQQLGVSG------- 755

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                   E  K       +R   + + 
Sbjct: 756 ----------------------------------------EEAKAQMEAYFARFGGVRDY 775

Query: 524 LHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           L +  E+    G    +  +RR +P +                                T
Sbjct: 776 LREVVEEARRKGYTETLFGRRRYLPDL--------------------------------T 803

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET 636
           +  Q  R       L   I Q  + DI+   M++  +A         ++L VHDE+V E 
Sbjct: 804 SDNQQQRAVAERAALNAPI-QGSAADIIKVAMIHVAEALAARNMRSRMLLQVHDELVLEV 862

Query: 637 PDTDEFN-ASMLYHLMTSNPS 656
            + ++   A+++   M S   
Sbjct: 863 AEGEQDELAALVAEQMGSAIE 883


>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
 gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
          Length = 952

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 122/342 (35%), Gaps = 51/342 (14%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           K L      E+ L  +   +   G  VD +L    ++ + VE  +L +E  +   G   +
Sbjct: 546 KLLRVYEDIERPLVGVLARMESAGITVDASLLAQESKELGVEVEQLVEEAHA-AAGHPFN 604

Query: 233 SRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               ++L   LF E GL +   T     +T + VLS      P    +  +R        
Sbjct: 605 LSSPKQLAQILFAEQGLPVVKKTASGTPSTDEEVLSELALNYPLPKIILEHRRL------ 658

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                    ++         P   + R  R H    Q +     
Sbjct: 659 -------------------------TKLKSTYLDKLPTL-IDRDGRIHTTFGQAVAVTGR 692

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             + DP+   I         +R+   A  G  ++ AD + +E R++A ++ +   L AF 
Sbjct: 693 LSSMDPNLQNIPTRTPEGRRIRTAFTARRGWSVIDADYSQVELRIMAHLSQDAGLLSAFS 752

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++ +T A  F+    QVT DQR + KV+   L Y   A     +A   GL+    A
Sbjct: 753 RGEDIHRSTAAEVFHTPLDQVTPDQRRMAKVINFGLIYGMSAF---GLAQQMGLDRQVAA 809

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             V       E+       +   E     A ED ++ TA  R
Sbjct: 810 AYVD------EYFHKFPGVKRYMEKTRAQAAEDGYVETAFGR 845


>gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4]
 gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4]
          Length = 884

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/545 (15%), Positives = 181/545 (33%), Gaps = 72/545 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112
           +  K+ L + ++     ++   R ++   +   I I      L++A     P+       
Sbjct: 363 EAFKKWLADDEMRKYTFDAK--RAIVALKW-KGIEIQGIYFDLLIAAYLLDPADTDKDFR 419

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTV--- 167
             A    +  ++  +E+  +  K         R  P             +   DV     
Sbjct: 420 AVAKMKETHAVKSDEEVYGKGAK---------RAVPAQDIVAEHVARKVHVLYDVQKTFV 470

Query: 168 -TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              +  ++ E  +  E  L  +   +  +G  VD     ++   +     +++QE+  L 
Sbjct: 471 EELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELA 530

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF    L +   T+T       VL    +      ++ + R   
Sbjct: 531 -GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMEHHEIIPKILHYRQL- 588

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L++ ++ D                               S+ H   +Q++
Sbjct: 589 GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQVL 618

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
           T      ++DP+   I         +R   I S EG  +  AD + IE RVLA +A ++ 
Sbjct: 619 TQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKG 678

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF+   D++  T    F V   +VT + R   K +   + Y        +     G+
Sbjct: 679 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGI 735

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                   +      E++  +    +   +   + A +  ++ T   R ++   +  SR 
Sbjct: 736 TRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR-RRYIPEITSRN 788

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
             L +   +    T   G A    K+  + +    +++     L+L     L++      
Sbjct: 789 FNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEE 848

Query: 577 RSYLN 581
              L 
Sbjct: 849 VEKLE 853


>gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
          Length = 896

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/640 (16%), Positives = 204/640 (31%), Gaps = 161/640 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           L++ LE+  +     +       L     LDI        ++LA        ++      
Sbjct: 377 LRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYLVNNENNSNDLGEV 433

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A       ++   E+  +  K                E    F         + +     
Sbjct: 434 AHLYDDYSVKTDLEVYGKGKKQAV------------PEDDEFFEHLAAKVAVIEKLKQPL 481

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           LE L   EQ+  Y         +   +   G  V+ ++ + L     V+  +L+ ++   
Sbjct: 482 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 541

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282
             G   +    ++L   LF +  L     T+T     +   ++L   +P   ++ + R  
Sbjct: 542 A-GEEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 600

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A +     +  L+E +  D R+                               H    Q 
Sbjct: 601 A-KIQNTYVKGLLECIQPDSRI-------------------------------HTRYLQT 628

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395
           +T      + DP+   I         +R   + S  +G      D + +E RVLA ++G+
Sbjct: 629 LTATGRLSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 687

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +AF++G D++  T  + F++  P +VT   R   K +   + Y         ++  
Sbjct: 688 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 744

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +                    E +P                        
Sbjct: 745 LGISRKQAKTFIDN----------------YFEQYP------------------------ 764

Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
               ++ + + +A ++  ENG A  I  +RR +P ++ K           + RS      
Sbjct: 765 ----QIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 807

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
              R+ +N+                   +Q  + DI+   M+N  K          +VL 
Sbjct: 808 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 847

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           VHDE++ + P  +      +   +M S       +PL A+
Sbjct: 848 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 885


>gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
 gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
          Length = 881

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/652 (14%), Positives = 196/652 (30%), Gaps = 159/652 (24%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK--------ACFNLDIPIHRWICTLVL 99
             +          L   +V     +S  + TV              L +P       ++L
Sbjct: 345 TKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNIVAAHRLGLHLP--DIAFDVLL 402

Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           A     P   +      A       +   +++  +  K         R  P  +  +  F
Sbjct: 403 ASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAK---------RQVPEDKLLFEQF 453

Query: 158 GE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  +    D+T      ++ +  +  E  L  +   +  +G  ++      +    
Sbjct: 454 ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKNMGTEF 513

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKK 268
                 L++++     G+  +    ++L   LF +  L +   T+T       VL+  K 
Sbjct: 514 SQSIKVLEEKIYGEA-GVKFNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKS 572

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
            +P    +                                 + G ++             
Sbjct: 573 ASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLLKAQ 601

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVADLAG 383
           +P   + H    Q +T      + DP+   I +      +R   + S    ++  +D + 
Sbjct: 602 MP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHPDWQIFSSDYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442
           IE RVL+ ++G++   +AF+ G D++  T  + F +  P +VT D R   K     + Y 
Sbjct: 661 IELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG 720

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                   +A   G++       +                                    
Sbjct: 721 ISDY---GLAQNIGISRKKAKAFIDGYF-------------------------------- 745

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561
                + + + H       + +    ++  E+G    +  +RR +P ++           
Sbjct: 746 -----EQYPKVH-------DYMENMVKKAREDGYVETLFHRRRYLPQIHS---------- 783

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
               R+   R     R+ +NT                   +Q  + DI+   M+   KA 
Sbjct: 784 ----RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQKAL 820

Query: 622 ------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                   ++L VHDE++ E P  +      L   +M S  S    +PLK E
Sbjct: 821 DEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLV--VPLKVE 870


>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 921

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/625 (15%), Positives = 192/625 (30%), Gaps = 149/625 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
           + LK  LE+  +  +  N  ++  VL       I +  +  T++L+              
Sbjct: 396 KKLKPVLEDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRHGHGMDE 452

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            +L     +    K +        T       + P           Y   D  +T  ++ 
Sbjct: 453 LSLLYFDHQPISFKSVCGTGKSAITFN-----HVPIPA-----ATRYAAEDADITFRLWA 502

Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P              ++ L  +   +   G  VD    H L+     + ++L++E+ 
Sbjct: 503 LLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIY 562

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMR 282
            L  G        ++L   LF   GL     +++      ++  ++L  +   + +    
Sbjct: 563 VLA-GCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGEVIASK--- 618

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                    L++   S+           +  P   R H     +
Sbjct: 619 ------------------------ILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLV 654

Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                   ++DP+   I     I   +R+  IA +G  L+ AD + IE R+ A +A E+ 
Sbjct: 655 GAQTGRLSSTDPNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKA 714

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AF+  ED++  T  + F      V ++ RA  K +                A   G+
Sbjct: 715 LLQAFQEKEDIHALTAKQLFG----HVDRESRARAKTIN--------------FAILYGI 756

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  ++ +        A+       E  P                           
Sbjct: 757 SAWGLAARLEIDR-----FSAQEMIDRYFERFP--------------------------- 784

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             + + + +  +    +G                        +  P GR      +    
Sbjct: 785 -AIRHYIDRTLDFVRLHG-----------------------YVETPFGRKTHLPAIK--- 817

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHD 630
                 +R++T       +     +Q +S DI+   M+    A          ++L VHD
Sbjct: 818 ------SRKVTERQAAERQAINAPIQGMSADIIKRAMVRMEPALAKAGLSSVKMLLQVHD 871

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSN 654
           E++ E P+ D   A  ++  +M   
Sbjct: 872 ELIFEVPEEDIEKAKPVIRQVMMEA 896


>gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 164/491 (33%), Gaps = 130/491 (26%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  +D A        V  E  +L+  +  L  G   + R   +L   L+   GL  
Sbjct: 491 MERIGIGIDTAALAAFGAEVATELARLEGAIRELA-GEGFNPRSSRQLGEVLYGRMGLKP 549

Query: 252 EDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
              T     +T Q  L       P   ++   R +  +     L+ L    ++ GR+   
Sbjct: 550 RGKTPGGAASTSQEALERLAGENPLVDRILEFR-KLEKLRSTYLDPLPRLADAAGRI--- 605

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISD 362
                                       H   + + T      +S+P+   I     +  
Sbjct: 606 ----------------------------HTTFNNLATATGRLSSSNPNLQNIPIRGTLGR 637

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R C +A+ GKKLV AD + IE RVLA ++GE   L AFE G D++  T A  F+ A A
Sbjct: 638 RMRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEA 697

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            +  D+R   K +   L Y  G    QK++   G+ L+                      
Sbjct: 698 DIRPDERRQAKTINFGLLYGMGP---QKLSRDLGIKLDAAKA------------------ 736

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                          FI    ER+        S +S  +  +    +   +     +A +
Sbjct: 737 ---------------FIEKYFERL--------SGLSTFYQGIVDTAKA--QGFVTTLAGR 771

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P ++                                   Q  R+          +V
Sbjct: 772 RRLLPEIHSANS---------------------------QLASQARRQ------AINTVV 798

Query: 603 QAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655
           Q  + DI+   M+ A         G  +VL VHDE++ ETP+     A   L  LM    
Sbjct: 799 QGGAADIIKMAMLAAHNDPELAGLGAAMVLQVHDELLLETPEAAAQAAGERLSALMCGVV 858

Query: 656 SWAKGLPLKAE 666
           + A  +PL  +
Sbjct: 859 ALA--VPLAVD 867


>gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22]
 gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22]
          Length = 886

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/640 (16%), Positives = 204/640 (31%), Gaps = 161/640 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           L++ LE+  +     +       L     LDI        ++LA        ++      
Sbjct: 367 LRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYLVNNENNSNDLGEV 423

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A       ++   E+  +  K                E    F         + +     
Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAV------------PEDDEFFEHLAAKVAVIEKLKQPL 471

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           LE L   EQ+  Y         +   +   G  V+ ++ + L     V+  +L+ ++   
Sbjct: 472 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282
             G   +    ++L   LF +  L     T+T     +   ++L   +P   ++ + R  
Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A +     +  L+E +  D R+                               H    Q 
Sbjct: 591 A-KIQNTYVKGLLECIQPDSRI-------------------------------HTRYLQT 618

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395
           +T      + DP+   I         +R   + S  +G      D + +E RVLA ++G+
Sbjct: 619 LTATGRLSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +AF++G D++  T  + F++  P +VT   R   K +   + Y         ++  
Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +                    E +P                        
Sbjct: 735 LGISRKQAKTFIDN----------------YFEQYP------------------------ 754

Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
               ++ + + +A ++  ENG A  I  +RR +P ++ K           + RS      
Sbjct: 755 ----QIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
              R+ +N+                   +Q  + DI+   M+N  K          +VL 
Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           VHDE++ + P  +      +   +M S       +PL A+
Sbjct: 838 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 875


>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 874

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 126/408 (30%), Gaps = 53/408 (12%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                  + +    + E  L  +   +   G CV+ A               L +E+ +L
Sbjct: 458 ETELAAQELMHLYRTVELPLVPVLAAMEQTGVCVNRAALEHERAAATERIDALAREIHTL 517

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNR 280
             G   +    ++L   LF + GL    + +T     T    L   +   P   +V   R
Sbjct: 518 A-GTEFNISSPKQLGEILFEQLGLGDGKVKKTKTGYSTNAETLEGLRDQHPIIDKVLTYR 576

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
           M                                ++              P   R H   +
Sbjct: 577 M-------------------------------WTKLRSTYLDGIGALIRPATGRVHTSFN 605

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAG 394
           Q +T      +SDP+   I         VR+     EG   L+ AD + IE R+LA M+G
Sbjct: 606 QTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSG 665

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF  G+D++  T A  F V    VT +QR   K +   + Y         +A  
Sbjct: 666 DATLIDAFRQGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDF---GLARD 722

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        +        + +  +  R   +     A  + ++ T   R ++A     
Sbjct: 723 LGIGRREAGGYID------RYFERYHGVRTFLDKIVADAHANGYVTTLYGR-RRALPALA 775

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
           SR     +   +    T   G A    K   V      +       +L
Sbjct: 776 SRNYMQRSFAERMAMNTPIQGTAADLIKIAMVRAYDALQAAGVKSRIL 823


>gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c]
 gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 312

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/255 (40%), Positives = 138/255 (54%), Gaps = 5/255 (1%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           W  F EY + DV   R++ KRL     +  E  LW+LDQTINDRG  +D  L       V
Sbjct: 3   WAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGAV 62

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  L Q  E+LT G V ++   + L   L    G+ L D+ + T  R +     L  
Sbjct: 63  ERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVDDPA-LPE 121

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLPR
Sbjct: 122 TVRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181

Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P+ S E +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RVL
Sbjct: 182 PTLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRVL 241

Query: 390 AWMAGEQWKLKAFET 404
           AW+AGE  KL AF  
Sbjct: 242 AWLAGETPKLHAFRE 256


>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
 gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
          Length = 948

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 109/638 (17%), Positives = 186/638 (29%), Gaps = 148/638 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-- 114
           LK  LE+  V  +  N  ++  VL       I +     T++L+       +   VG   
Sbjct: 420 LKPLLESDAVLKIGQNIKYDLNVLARY---GIAVAPIDDTMILSFDLDAGRSEGGVGGHG 476

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +LS + +          C          +  P          EY   D  VT  + + 
Sbjct: 477 MDELSERHLGHTPLSFKEVC------GTGRKQIPFGEVPLDKATEYAAEDADVTWRLHQH 530

Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L+P  + E            L  +   +   G  VD A    L++    E  KL++ +  
Sbjct: 531 LKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDRARLAKLSEEFATETAKLEKTIHE 590

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKL-TPQAIQVFNN 279
           L  G   +    ++L   LF + G            +T Q VL          A +V   
Sbjct: 591 LA-GKEFTVGSPKQLGEVLFDDLGHKGGKKGKSGQYSTDQSVLERLSGDGAEIADKVLEW 649

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R                                 ++              P   R H   
Sbjct: 650 RQL-------------------------------TKLKSTYTDALQQAINPDTGRVHTSY 678

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
             +        ++DP+   I     I   +R   +   G  L+ AD + IE R+ A MA 
Sbjct: 679 SLVGAQTGRLSSTDPNLQNIPIRTPIGRQIREAFVPENGNVLLAADYSQIELRLAAHMAD 738

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  GED++  T    +     +  +D RA  K +                A  
Sbjct: 739 VPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTIN--------------FAIL 780

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A  +K                                    +  ++      
Sbjct: 781 YGISRWGLAGRLKIEP---------------------------------DEAQELIDTYF 807

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R   + + +H+  E   E G +                           GR   +  +G
Sbjct: 808 KRFPGIQSYIHETLETVRERGYSETLF-----------------------GRKTWFPRIG 844

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---DIVLTVHDE 631
           +        + +        G   + I +A++R      M     AG     ++L VHDE
Sbjct: 845 SKNQAERQGSERAAINAPIQGTSADIIKRAMAR-----MMPALEDAGLEHVRMLLQVHDE 899

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAE 666
           +V E P+ D E  + ++  +M      A    +PL  E
Sbjct: 900 LVFELPEGDVEAASPIIERVMAEAALPAVELSVPLGIE 937


>gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 933

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/546 (16%), Positives = 178/546 (32%), Gaps = 56/546 (10%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
              D  V+ W       +   +   L +  +    H    ++ VL    +L++ +   + 
Sbjct: 390 SLSDGAVQQW---KPSEVLAKVGPLLSDAKLPKYTHALKDQQVVLSRA-DLNVEVRNVVG 445

Query: 96  TLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR-NKPNH 150
             +LA     P      L+ + + +        E   ++ +  K    + +      P  
Sbjct: 446 DTLLASYTLDPARSDHNLEGLAKDIGGRLVGDRES--IVGKGKKRVGFDQVAVAVAGPWA 503

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
            E   L        V   +   ++ + L +  E  L  +   +  RG  +D A     N 
Sbjct: 504 GERAGLAATLGPHMVAAAKAAGEQTQKLYAEVELPLARVLARLERRGVLLDEAELQRQND 563

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
            +  +   L   L+    G        ++L   LF E GL  +  T+T       + ++L
Sbjct: 564 ELGGQIDALKSTLQEEA-GYAVDPNSPKQLGKLLFEERGLPAKKKTKTGYSTDAQTLEEL 622

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           +                              D  ++  L +   ++         P    
Sbjct: 623 SLL----------------------------DPIVKVILDYRSLAKLKNTYLDTLPKLVN 654

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384
           P   R H    Q +       + +P+   I         +R   +A EG +LV  D + I
Sbjct: 655 PNTGRLHTHFRQAVAATGRLSSREPNLQNIPIRTEQGRRIRRGFVAPEGMQLVTLDYSQI 714

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +   +KAF  G D++  T A  F V  A+VT +QR + K +   + Y   
Sbjct: 715 ELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAEVTSEQRRVAKAVNFGVIYGQS 774

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A     +A   G+        +K     ++     ++   + +   +    +   G    
Sbjct: 775 AF---GLARQLGIPQGRAGKYIKA--YFKKIPGVSSYMNALIDTAKDTGFAETIFGRRRR 829

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             +   R   +R     +   +    T   G A    K   V +  +  DK    ++L  
Sbjct: 830 IPELRRRGAVAR-----SYGERIARNTPIQGSAADILKIAMVEVERLLDDKPWARMLLTV 884

Query: 565 GRSLVY 570
              L++
Sbjct: 885 HDELIF 890



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 590 EYTYGGKLTEN-IVQAVSRDILAEGMMNATKAG-----YDIVLTVHDEIVCETPDTDEFN 643
             +YG ++  N  +Q  + DIL   M+   +         ++LTVHDE++ E        
Sbjct: 840 ARSYGERIARNTPIQGSAADILKIAMVEVERLLDDKPWARMLLTVHDELIFECETDKVQE 899

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEG 667
              L        + +  +PL  EG
Sbjct: 900 LIGLVKPAMEKSA-SLDVPLLVEG 922


>gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 914

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 110/632 (17%), Positives = 193/632 (30%), Gaps = 145/632 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L + L + D     H +      + A       +        LA     P          
Sbjct: 392 LGDWLADADQPKALHEAK---WAMHALRGRGWVLGGLTSDTALAAYLVRPGQ-----RTF 443

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTVTRE 170
            L    +   +  +     GE    L D       EA                 +    +
Sbjct: 444 NLDDLSLRYLRRELRVEETGEEQLSLLDDADQVDAEAAETEILSARAVLDLAAALDTELD 503

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             +    LS  E  L  +   I   G  VD    H L      E +   +    +  G  
Sbjct: 504 NIESTALLSEMELPLLEVLADIEASGIAVDGTHLHDLQSRFAAEVSAAAEAAYGVI-GKQ 562

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV-- 288
            +    ++L+  LF E  +     T+T       + + L  +    F   + A R A   
Sbjct: 563 INLGSPKQLQVVLFDELEMPKTKKTKTGYTTDAEALQNLFEKTSHPFLEHLLAHRDATRL 622

Query: 289 -LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
            + ++ L++ +  DGR+  T                                +Q +    
Sbjct: 623 KVTVDGLLKTVAEDGRIHTT-------------------------------FNQTVAATG 651

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401
              +++P+   I         +R   +  EG   L+ AD + IE R++A ++G++  ++A
Sbjct: 652 RLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDEGLIEA 711

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F TGEDL+    AR+F V   +VT + R   K M   L Y   A     +A+   ++   
Sbjct: 712 FNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAF---GLAAQLKISTEE 768

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                        K       +R   + 
Sbjct: 769 A--------------------------------------------KSQMEAYFARFGGVR 784

Query: 522 NELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
           + LH+  EQ  ++G  + +  +RR +P +                               
Sbjct: 785 DYLHEVVEQARKDGYTSTLYGRRRYLPDL------------------------------- 813

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634
            T+  +  RE      L   I Q  + DI+   M+N  ++         ++L VHDE+V 
Sbjct: 814 -TSDNRQRREVAERAALNAPI-QGTAADIIKVAMINVQRSLRDAGLKSRMLLQVHDELVL 871

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
           E  D++      L    M+S       +PL  
Sbjct: 872 EVVDSEREQVEQLVRDKMSSAIE--LSVPLDV 901


>gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17]
 gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17]
          Length = 877

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/545 (15%), Positives = 181/545 (33%), Gaps = 72/545 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112
           +  K+ L + ++     ++   R ++   +   I I      L++A     P+       
Sbjct: 356 EAFKKWLADDEMRKYTFDAK--RAIVALKW-KGIEIQGIYFDLLIAAYLLDPADTDKDFR 412

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTV--- 167
             A    +  ++  +E+  +  K         R  P             +   DV     
Sbjct: 413 AVAKMKETHAVKSDEEVYGKGAK---------RAVPAQDIVAEHVARKVHVLYDVQKTFV 463

Query: 168 -TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              +  ++ E  +  E  L  +   +  +G  VD     ++   +     +++QE+  L 
Sbjct: 464 EELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELA 523

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF    L +   T+T       VL    +      ++ + R   
Sbjct: 524 -GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMEHHEIIPKILHYRQL- 581

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L++ ++ D                               S+ H   +Q++
Sbjct: 582 GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQVL 611

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
           T      ++DP+   I         +R   I S EG  +  AD + IE RVLA +A ++ 
Sbjct: 612 TQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKG 671

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF+   D++  T    F V   +VT + R   K +   + Y        +     G+
Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGI 728

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                   +      E++  +    +   +   + A +  ++ T   R ++   +  SR 
Sbjct: 729 TRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR-RRYIPEITSRN 781

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
             L +   +    T   G A    K+  + +    +++     L+L     L++      
Sbjct: 782 FNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEE 841

Query: 577 RSYLN 581
              L 
Sbjct: 842 VEKLE 846


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/693 (14%), Positives = 208/693 (30%), Gaps = 166/693 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57
             + ID ET S        +  Y     +I  +  F +             +      ++
Sbjct: 340 KYISIDTETSS--------LDTY--TAKLIGISISFKEFEGYYIPIEAKGKVYIEKHYII 389

Query: 58  KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           ++   L  +   I+  N  F+  +LK      IP   +  T++ A      S +     A
Sbjct: 390 QKFNNLFKSKPKIIGQNYKFDYKILKNNGFDPIPP--YFDTMIAAYLIDTNSKVSLDFLA 447

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF--- 172
            K    K  + +++I              +N      +  +   Y   D  +T  +F   
Sbjct: 448 EKYLMHKNIKYEDVIQ-------------KNDNFAHISLEMATSYSSEDADITFRLFNVF 494

Query: 173 -KRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            ++L+       +   E     +   + + G  +D        + +  E   ++ E+   
Sbjct: 495 NEKLKEDGLDKLMYEIEMPFNRVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK- 553

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           + G+  +    +++   LF    L L D  +   T  +VL S K        +  +R  A
Sbjct: 554 SIGIDFNLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKVLESLKGQHESIENLIKHRQIA 613

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                          +               + +R H    Q  
Sbjct: 614 -------------------------------KLKSTYTDNLTELINYKTNRLHTNFIQTK 642

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   I         +R       G   + AD + IE  +LA ++ ++  
Sbjct: 643 TATGRITSINPNLQNIPIKEEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVL 702

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +KAFE  +D++  T ++ F +   ++T + R I K +   +                   
Sbjct: 703 IKAFENNKDIHAETASKLFKIEEKEITPNLRRIAKSINFGII------------------ 744

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                      + +    A E        +    ++   + ++ 
Sbjct: 745 --------------------------YRMSDFRLAKELGITKEEAKGFINSYFDSYPKIK 778

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E           T       I+++RR +  +    + NN +    + R            
Sbjct: 779 EFITNQINFVRNT--GYSETISKRRRYIKEI----NSNNYLERSAAERI----------- 821

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                                +I+Q  + DI+   M+         K    I+L VHDE+
Sbjct: 822 ------------------AINSIIQGSAADIMKIAMIKVFNEFKSKKMKSKILLQVHDEM 863

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           + E+P  +E     +   M    ++   LPL+A
Sbjct: 864 LIESPIEEENETKKILKNMMET-AYTLSLPLRA 895


>gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D   V H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
 gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
          Length = 891

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 90/513 (17%), Positives = 152/513 (29%), Gaps = 125/513 (24%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              E    +  L+  E  L  +  T+   G  VD     TL+           QE  ++ 
Sbjct: 477 AELEASDSMSLLADLELPLVDVLMTMESTGIAVDTDHLDTLHAEFTERMLGAAQEAYAVI 536

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G   +    ++L+  LF E G+     T+T       + + L  +    F   + A R 
Sbjct: 537 -GREVNLGSPKQLQVVLFDELGMPRTKRTKTGYTTDADALQGLFAKTQHPFLEHLLAHRD 595

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                           RLR T++                    P   R H    Q I   
Sbjct: 596 VT--------------RLRQTVE-------------GLQKTVAP-DGRIHTTYAQTIAAT 627

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLK 400
               ++DP+   I         +R       G + L+ AD + IE R++A ++ +   ++
Sbjct: 628 GRLSSADPNLQNIPIRTESGRRIREAFCVGPGFETLLTADYSQIEMRIMAHLSEDAGLIE 687

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF TGED +    A+ F+  P  +    RA  K M   L Y   +     +    G++  
Sbjct: 688 AFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAMNYGLAYGLSSY---GLGQQLGISPG 744

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               L                                                      +
Sbjct: 745 DAQVL--------------------------------------------MDDYFQTFGGV 760

Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            + LH   ++  + G  A I  +RR +P +                              
Sbjct: 761 RDYLHGVVDEARQTGFTATILGRRRYLPDL------------------------------ 790

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
              +  +  RE      L   I Q  + D++   M+   +A      G  ++L VHDE+V
Sbjct: 791 --QSDNRQRREMAERMALNAPI-QGSAADLIKVAMLGVDRALADAGLGSRMLLQVHDELV 847

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            E    +      L    M +       +PL  
Sbjct: 848 LEVAPGERDALEALVREQMAAAAD--LSVPLDV 878


>gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
 gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
          Length = 876

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 94/576 (16%), Positives = 159/576 (27%), Gaps = 135/576 (23%)

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +G+ L    +   + +      C G+  E   D +     E            +     
Sbjct: 405 ELGDYLLHPEESRRDIERTAFALC-GDAAEAPADLSDEQRAEREAQLAARLHSPLQAALA 463

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
               L      E  L  +   +   G  V+           +     L +E+ +L  G+ 
Sbjct: 464 EAGLLPLYQDVELPLVPVLAAMEQTGIYVNRTALERERAAANARIDALAEEIHALA-GME 522

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC------QRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    ++L   LF    L      + T          L   +   P   +V   RM   
Sbjct: 523 FNISSPKQLGEVLFERLELAAGTKIKKTKTGYSTNAETLEELRDRHPIVDKVLTYRM--- 579

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                        ++              P   R +   +Q +T
Sbjct: 580 ----------------------------WTKLRSTYLDGIGALIRPETGRVYTNFNQTVT 611

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWK 398
                 +SDP+   I         VR+     EG   L+ AD + IE R+LA M+G+   
Sbjct: 612 ATGRLSSSDPNLQNIPVRTEEGRAVRALFEPGEGYDVLLSADYSQIELRILAHMSGDATL 671

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++  T A  F V    VT +QR   K +   + Y         ++    + 
Sbjct: 672 IDAFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNFGIVYGLSDY---GLSRDLRIP 728

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A  ++                                            +   R  
Sbjct: 729 RKEAAGYIE--------------------------------------------RYFERYH 744

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NR 577
            +   L +       NG       RR                 L +  S  Y       R
Sbjct: 745 GVREFLDKTVADAHANGYVTTLYGRR---------------RELSAINSRNYMQRSFAER 789

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDE 631
             +NT                   +Q  + D++   M+ A  A +       I+L VHDE
Sbjct: 790 MAMNTP------------------IQGTAADLIKIAMIRAHDALHAAGVKSRILLQVHDE 831

Query: 632 IVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           +V E  + +    S L    M+     A  +PL  +
Sbjct: 832 LVLEAAEAEIAQVSGLLRTAMSGAAELA--VPLAVD 865


>gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121]
          Length = 466

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/551 (14%), Positives = 163/551 (29%), Gaps = 140/551 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTV----TREIFKRLEP------LSSKEQELWYLDQT 191
           +Y + K +H     +  ++    +        E+ K+L+       L+  E  L  +   
Sbjct: 19  IYGKGKKHHVPEDEILNKHVASIIEAVSESKAEMQKQLKEYNQESLLADLELPLAEILSE 78

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           + + G   DV     + + +  +   L + +     G   +    ++L   LF    L +
Sbjct: 79  MEEIGIFTDVKDLQQMEKEIQEKLDVLIKNIHE-AAGEEFNINSPKQLGVVLFETLELPV 137

Query: 252 EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+T       VL   +   P    +   R                            
Sbjct: 138 IKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQL-------------------------- 171

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
                S+             +    R H   +Q +       + DP+   I         
Sbjct: 172 -----SKLQSTYVEGLQK-VISDDHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRK 225

Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R      S    ++ AD + IE RVLA +  ++   +AF  G D++  T  + F+V   
Sbjct: 226 IRKAFKPTSSDSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVEAD 285

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +V    R   K +   + Y        +   + G+        +       ++ D+    
Sbjct: 286 EVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAKAFID------DYLDSFPGV 336

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
           +    +  + A    F+ T                                        +
Sbjct: 337 KQYMSDIVKDAKAQGFVETLL-------------------------------------HR 359

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +  +           + RS         R+ +NT                   +
Sbjct: 360 RRYIPDITSRNF---------NLRSFA------ERTAMNTP------------------I 386

Query: 603 QAVSRDILAEGMMN------ATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNP 655
           Q  + DI+   M+        T     ++L VHDE++ E P  +  + +  +  +M S  
Sbjct: 387 QGSAADIIKLAMVQFNKEVQHTDYHAKLLLQVHDELIFEVPKDEVASFSKFVEEIMESAL 446

Query: 656 SWAKGLPLKAE 666
                +PLK +
Sbjct: 447 K--LDVPLKVD 455


>gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14]
          Length = 871

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/504 (14%), Positives = 156/504 (30%), Gaps = 131/504 (25%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L +    +   G  V+        + +     +L++E+  +  G   +    ++
Sbjct: 472 NEIEMPLVFTLYDMEQAGVKVEGEELKRYGEELGARIVELEKEIYEMA-GEEFNINSPKQ 530

Query: 239 LKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L   LF +  +     T+T   T   VL       P   ++   R  A   +        
Sbjct: 531 LGVILFEKLEMPHAKKTKTGYSTAADVLDKLAPEYPIVAKILEYRQLAKLKSTY------ 584

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
               +DG       ++G                     R H + +Q IT      +++P+
Sbjct: 585 ----ADG----LANYIGM------------------DGRIHSKFNQTITATGRISSTEPN 618

Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I     +   +R   +  EG   V AD + IE R+LA  +G++  ++A+    D++ 
Sbjct: 619 LQNIPVRMELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHR 678

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T ++ F+V   +VT  QR   K +   + Y   +    +      ++    A  ++   
Sbjct: 679 MTASQVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISRKEAAQYIEHYF 735

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                    + +  +    ++     ++
Sbjct: 736 -----------------------------------------ESYPGIKTFLDKCVSDAKE 754

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             +     +  +RR +P +   K  N +                  R  +N         
Sbjct: 755 --KGYAETLYGRRRPMPEL---KSSNFMQRSF------------GERVAMNAP------- 790

Query: 591 YTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M      +        ++L VHDE++ E  +T+    
Sbjct: 791 -----------IQGTAADIIKIAMIHVNEELKKRNLKSRMILQVHDELLIEADETE---L 836

Query: 645 SMLYHLMTSNPSWAKGL--PLKAE 666
             +  ++      A  L  PL  +
Sbjct: 837 EEVQQILQDKMEHAAELLVPLSVD 860


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 880

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 111/665 (16%), Positives = 205/665 (30%), Gaps = 155/665 (23%)

Query: 46  DCVHDPVMP--QVLKEALENTDVT--IVAHN---------SYFERTVLKACFNLDIPIHR 92
           D   D  +   +VL++     D+      H          S     + K  F   I  + 
Sbjct: 316 DLFSDEDIFYFEVLRDNYHREDIIGFAWGHGEQIYASTDLSLLSTDLFKKVFEKPIATYD 375

Query: 93  WICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--CKGETHECLYDRNK 147
           +  + VL    G+     +    L    LS+ +  E   +   F     E  + +Y +  
Sbjct: 376 FKRSKVLLSHLGIELVAPSYDARLANYLLSNVEDNELTTIARLFTDISLEADDSIYGKGV 435

Query: 148 PNHREAWRLFGEYCKGDVTV----------TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
                   +   +    V V                +++     E  L  +   +   G 
Sbjct: 436 KRAVPEKEVLLGHLARKVKVLLDSRAPMVEKLADHDQIDLYHEIELPLANVLAKMEIEGI 495

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLT 255
            V+ A    + +   V    L QE+  +  G   +    ++L + LF +  L LE    T
Sbjct: 496 KVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILFEKMQLPLEMTKKT 554

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +T     +   ++L P A  V                               L +   ++
Sbjct: 555 KTGYSTAVDVLERLAPIAPIVAK----------------------------ILDYRQITK 586

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                        L    + H    Q +T      + DP+   I         +R     
Sbjct: 587 LQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTP 645

Query: 371 S-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQ 428
           S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + 
Sbjct: 646 SHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTAND 705

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   + Y         +++  G+        + T      + +     +   EN
Sbjct: 706 RRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------YFERYPGIKAYMEN 756

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               A +  ++                                       + ++RR++P 
Sbjct: 757 VVREAKDKGYV-------------------------------------ETLFKRRRELPD 779

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
           +              + R+   R     R+ +N+                   +Q  + D
Sbjct: 780 I--------------NSRNFNVRSF-AERTAINSP------------------IQGSAAD 806

Query: 609 ILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGL 661
           IL   M+N   A         ++L VHDEIV E P+ +      L    M +    A  +
Sbjct: 807 ILKIAMINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTAIKKLVKDTMEAAVDLA--V 864

Query: 662 PLKAE 666
           PL+A+
Sbjct: 865 PLRAD 869


>gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/503 (18%), Positives = 161/503 (32%), Gaps = 130/503 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +D A        V+ +  +L + +     G   + R  ++L
Sbjct: 489 ELEIPLIPVLVAMERAGISIDDAAFQAFLNDVNAQLDELTRSIIGYA-GEEFNIRSSQQL 547

Query: 240 KTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
              LF + G+     T T    T  +VL   +   P    V   RM     +   L  L 
Sbjct: 548 AVVLFDQLGIKAGSKTSTGLRSTANQVLEKIRDQHPIVDAVLEFRMLEKLRSTY-LEPLP 606

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + +  DGRL                               H   +Q+ T      +S P+
Sbjct: 607 KMVGEDGRL-------------------------------HTHFNQLSTATGRLSSSQPN 635

Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I         +R+C  A+EG  L  AD + IE RVLA  + +   + AF   ED++ 
Sbjct: 636 LQNIPIRGVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAFRHDEDIHA 695

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T A   +   + VT D+R   K +   L Y  G    QK+A    +             
Sbjct: 696 RTAALIHDKDISAVTPDERRGAKTINFGLIYGMGV---QKLARELQIKQTEAQEF----- 747

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E++       +   +   + A    F+                               
Sbjct: 748 -TEKYFAKMATLKAYYDTVVKDAETHGFV------------------------------- 775

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                   +A +RR +P ++ +                            N  + Q  R+
Sbjct: 776 ------TTLAGRRRLLPELHSRN---------------------------NQLSAQARRQ 802

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA 644
                     ++Q  + DI+   M+ A K       G  ++L VHDE++ E P+ +   A
Sbjct: 803 ------AVNTVIQGSAADIIKMAMVQAHKDKRLRELGAQLILQVHDELIIEAPEANIKEA 856

Query: 645 -SMLYHLMTSNPSWAKGLPLKAE 666
              L  +M +       +PLK +
Sbjct: 857 GGRLLEIMQTVAK--LDVPLKVD 877


>gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
 gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
          Length = 893

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 90/612 (14%), Positives = 170/612 (27%), Gaps = 131/612 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L++ L +     + H++      L +       +   I    LA     P       E L
Sbjct: 373 LRQWLMDPHYPKIVHSAKEAWHALHSFSG---GVKGVIADTELAAYLAFPDQRSYGLEDL 429

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +      +   +  +             +                  +           
Sbjct: 430 SI-RYVSRDITPVAHQAQGSLDLGLDDTDDALRALANRAAVLPQLAQALDAELSDRSLTA 488

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   +   G  VD+    +L+      +    Q+      G   +    
Sbjct: 489 LYQEMELPLTVVLAQMEHVGVAVDLEQLRSLDAFF-AHQGSEAQKAAFEAIGRQVNLGSP 547

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNT 293
           ++L+  LF +  +      +T      +S   L  +    F   +   R +      +  
Sbjct: 548 KQLQEVLFDQLDMPKTKKIKTGYTTDAASLADLFVKTGHPFLQHLLEYRDSTKLRQTVEG 607

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++++  DGR+  T                                 Q +       ++D
Sbjct: 608 LLKSVADDGRVHTT-------------------------------FQQTVAATGRLSSTD 636

Query: 354 PDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  EG   L+ AD + IE R++A ++ +   + AF+ GED
Sbjct: 637 PNLQNIPIRTETGRRIRQGFVVGEGLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGED 696

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+    AR F V+  +VT   R+  K M   L Y   A     ++    +++   + L+ 
Sbjct: 697 LHNFVGARVFGVSIDEVTPQMRSKVKAMSYGLAYGLSAF---GLSKQLNISVGEASTLMD 753

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                           R   + + L   
Sbjct: 754 DYFT--------------------------------------------RFGGVRDYLTSV 769

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +    G       RR                 LP                L +  RQ 
Sbjct: 770 VARARTTGYTETIMGRRRY---------------LP---------------DLTSDNRQ- 798

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PDTD 640
            RE      L   I Q  + D++ + M+    A         ++L +HDE++ E  P   
Sbjct: 799 RRENAERVALNAPI-QGSAADVIKQAMLGVDAAFRSEGLSSRLLLQIHDELIVEVAPGEQ 857

Query: 641 EFNASMLYHLMT 652
           E    ++   M 
Sbjct: 858 EIAERIVREEMA 869


>gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
 gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
          Length = 890

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/553 (16%), Positives = 175/553 (31%), Gaps = 135/553 (24%)

Query: 135 KGETHECLYDRNKPNHR-EAWRLFGEYCK-----GDVTVTREIFKRLEPLSSKEQELWYL 188
           KG     L ++  P+ R +    + E          ++     ++    L   E  L  +
Sbjct: 440 KGYALGGLIEKYLPDFRCDVEERYKEIAAFPALCDALSKELTEWEMGSLLHDIELPLSEV 499

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              + + G+ VDVA   T  +++ VE  ++ QE+     G   +     +L   LF + G
Sbjct: 500 LANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYA-GEEFNINSTRELGAILFDKLG 558

Query: 249 LHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L     T+T     +   +KL    P A  V   R + ++ +   +  L++    D R+ 
Sbjct: 559 LPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYR-KLTKLSSTYVTGLLKVTGPDQRVH 617

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----I 360
                                              Q  T      +++P+   I     +
Sbjct: 618 SVF-------------------------------RQTETRTGRISSTEPNMQNIPIRTEL 646

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   +A  G  L+ AD + IE R+LA ++ +   + AF  G D++  T ++ F V 
Sbjct: 647 GSQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQVFGVP 706

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              +  + R   K +   + Y              G+   + +  +  + A     +A+ 
Sbjct: 707 AEVLPAELRRRAKAINFGIVY--------------GIGAYSLSQDINVSVA-----EAKE 747

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +       +                         S V +  N++ ++  ++    K +  
Sbjct: 748 YIENYLHTY-------------------------SGVRQYMNDIVESSAKS-GYVKTMFG 781

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
           R R                  LP              +  N  T+               
Sbjct: 782 RVRH-----------------LP------------EITSSNHNTKAFGERVA-----LNT 807

Query: 601 IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTS 653
            +Q  + DI+   M+              ++L VHDE++ E    D   A ++    M  
Sbjct: 808 PIQGTAADIIKIAMVKVYRRLKEEGLSAQLILQVHDELLIEVSKADAPRAKVILKEEMEH 867

Query: 654 NPSWAKGLPLKAE 666
                  +PL  +
Sbjct: 868 AAD--LSVPLSVD 878


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 867

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 104/675 (15%), Positives = 210/675 (31%), Gaps = 164/675 (24%)

Query: 29  CVILFAFGFDDHP--VELWD-----CVHDPVMP---QVLKEALENTDVTIVAHNSYFERT 78
            V   +F  DD    VE+ D      + +  +      +K+   N     +  N  F  T
Sbjct: 324 EVKAVSFATDDESFFVEVDDYEVFKLLDNEKLTLIGHDIKDFFVNLSYHGIELNCKFYDT 383

Query: 79  VLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
            +     L+     +    VL +     +P+    +G+     S    + K LI   C  
Sbjct: 384 AIMTYL-LNPSESNYDIGRVLKKYLKEDIPNIEDMLGKGKSKKSYDDIDKKLLIDYLCAT 442

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            +             +    F            E+ + L+ +   E  L  + +++   G
Sbjct: 443 ASKLSKLK-------DKLMSF--------IKEMEMEELLDNV---ELPLVEVLKSMEVYG 484

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
           + +D  +   L++ +  +  K+ +++     G   +    ++L  +LF +  L     T+
Sbjct: 485 FTLDKDVLKDLSKEIGEKTDKIIKDIYD-AAGYEFNINSTKQLSEFLFDKLNLPPIKKTK 543

Query: 257 TTCQRVLSSNKKLTP---QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           T     +    +L P      ++   R      +   ++  +  M+ D ++         
Sbjct: 544 TGYSTDMEVLVELIPYNEIVGEIIEYRQLMKLKSTY-IDGFMPIMDKDDKV--------- 593

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                 H    Q +       +++P+   I         +R   
Sbjct: 594 ----------------------HSTFKQTVAATGRISSTEPNLQNIPVRDEFGRRIRKAF 631

Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           I+S +G  +V AD + IE RVLA ++ +   +++F   ED+++ T +  F +AP +VT +
Sbjct: 632 ISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEEVTGE 691

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y         ++    ++       +                     
Sbjct: 692 MRRRAKAVNFGIVYGISDY---GLSRDLKISRKEAKEYID-------------------- 728

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                                       R   + N +    +   ENG       RR   
Sbjct: 729 ------------------------NYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRY- 763

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                         +P   S  Y       R  +NT                   +Q  +
Sbjct: 764 --------------IPEINSKNYNQRSFGERMAMNTP------------------IQGSA 791

Query: 607 RDILAEGMMNA------TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAK 659
            DI+   M+              ++L +HDE++ +T PD  E   ++L  +M +      
Sbjct: 792 ADIIKMSMVKVYNELKSRSLKSKLILQIHDELIVDTFPDEVEIVKNLLKTIMENVIK--L 849

Query: 660 GLPLKAE-GYESKRY 673
            +PL  + GY    Y
Sbjct: 850 RVPLVVDIGYGKNWY 864


>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
 gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
          Length = 901

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/468 (16%), Positives = 150/468 (32%), Gaps = 71/468 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           +K   EN ++T V  N  ++  VLK        PI     T++++       +      A
Sbjct: 379 IKSITENENITKVGQNIKYDMHVLKNYDVTFKGPIE---DTMIMSYVIDSTESHGMDKLA 435

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            K         + ++ +  K  T + +          +      Y   D  VT ++++ L
Sbjct: 436 KKYLDHDCISFESVVGKGVKQLTFDQV----------SIDDAYLYASEDADVTLQLYEHL 485

Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                            E         I   G  +   + H  NQ + ++   L+ E   
Sbjct: 486 NKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQNQDLGLKILNLENEAYQ 545

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +      +    ++L+  LF +  +         T +T + VL            +  +R
Sbjct: 546 IA-EQPFNLSSPKQLREILFDKMKIIPTKKTPTGTPSTSEDVLEELSHDHALPKVILEHR 604

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+         P        R H   +
Sbjct: 605 SL-------------------------------SKLKNTYTDKLPKMINLNTKRIHTSYN 633

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +S+P+   I         VR   IA+   ++V  D + IE R++A ++ +
Sbjct: 634 QAVAITGRLASSEPNLQNIPIKTKEGRKVREAFIANTDSQIVSCDYSQIELRIMAHLSKD 693

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF   ED++ +T +  FN   A V+ +QR   KV+   L Y   A    +   T 
Sbjct: 694 PGLLDAFNQNEDIHRSTASAIFNTNDASVSSEQRRFAKVINFGLIYGMSAFGLSQ---TL 750

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            ++ N+  + +      E++   +N+    +    E    +   G   
Sbjct: 751 NIDRNSAKNFID--QYFEKYPGVKNYMDQGKLVAKEQGYVETVFGRRL 796



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNP 655
           Q  + D++   M N        K    +++ VHDE+V E P+ + +   + +  +M++  
Sbjct: 822 QGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDELVLEVPNAELDIIKTEIPKIMSNVA 881

Query: 656 SWAKGLPLKAE 666
           +    +PL A+
Sbjct: 882 T--LDVPLIAD 890


>gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D   V H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 882

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/491 (19%), Positives = 161/491 (32%), Gaps = 129/491 (26%)

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  VD+    TL        T+  +E  ++  G   +    ++L+  LF E G+ 
Sbjct: 492 ELEIAGVAVDLEQLTTLEAHYLSRVTQAAEEAYAVI-GKQINLGSPKQLQVVLFDELGMP 550

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGT 307
               T+T       + + L  +    F   M   R A      +  L++++  DGR+  T
Sbjct: 551 KTKRTKTGYTTDAEALQGLFEKTEHPFLQHMLEHRDATKLRTTVEGLIKSVADDGRIHTT 610

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
                                          L Q I       +++P+   I        
Sbjct: 611 -------------------------------LLQTIAATGRLSSTEPNLQNIPVRTEEGR 639

Query: 363 CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   +  EG  +L+ AD + IE R++A ++ ++  ++AF +GEDL+    +R+F++ P
Sbjct: 640 RIRDAFVVGEGFTELMTADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPP 699

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            ++T + R   K M   L Y   A    +    +                          
Sbjct: 700 EEITPELRYRVKAMSYGLAYGLSAYGLSQQLRIS-------------------------- 733

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 E  K        R   + + LH       +NG      
Sbjct: 734 ---------------------TEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKNGYTETVF 772

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            RR                 LP                LN+  RQ  RE      L   I
Sbjct: 773 GRRRY---------------LP---------------DLNSDNRQ-RREMAERMALNAPI 801

Query: 602 VQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654
            Q  + DI+   M+N  +A         I+L VHDE+V E  + ++     L    M S 
Sbjct: 802 -QGSAADIIKVAMLNVHRALVEAKLKSRILLQVHDELVLEVAEGEKEQLEQLVREGMGS- 859

Query: 655 PSWAKGLPLKA 665
            ++A  +PL+ 
Sbjct: 860 -AYALAVPLEV 869


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 145/520 (27%), Gaps = 133/520 (25%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                    ++   + E  L  +   +   G  VD A               L +E+ +L
Sbjct: 458 ETELAAQGLMQLYRTVELPLVPVLAAMEQTGVYVDRAALERERAAATERINALAREIHTL 517

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNR 280
             G   +    ++L   LF   GL    + +T     T    L   +   P    V   R
Sbjct: 518 A-GAEFNISSPKQLGEILFEHLGLGSGKVKKTKTGYSTNAETLEGLRDQHPIIDNVLTYR 576

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
           M                                ++              P   R H   +
Sbjct: 577 M-------------------------------WTKLRSTYLDGIGALIRPATGRVHTSFN 605

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAG 394
           Q +T      +SDP+   I         VR+     EG   L+ AD + IE R+LA M+G
Sbjct: 606 QTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSG 665

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF  G+D++  T A  F V    VT +QR   K +   + Y         +A  
Sbjct: 666 DATLIDAFRHGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDF---GLARD 722

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+        +      E +     F                                 
Sbjct: 723 LGIGRREAGGYID--RYFERYHGVRTF--------------------------------- 747

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                    L +       NG       RR                 LP+  S  Y    
Sbjct: 748 ---------LDKIVADAHTNGYVTTLYGRR---------------RALPALASRNYMQRS 783

Query: 575 N-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
              R  +NT                   +Q  + D++   M+ A  A         I+L 
Sbjct: 784 FAERMAMNTP------------------IQGTAADLIKIAMVRAYDALQAADVKSRILLQ 825

Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           VHDE+V E    +    + L    M+     A  +PL  +
Sbjct: 826 VHDELVMEVTAEETETVTELLRTAMSGAAELA--VPLAVD 863


>gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D   V H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626]
 gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626]
          Length = 903

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/518 (16%), Positives = 159/518 (30%), Gaps = 132/518 (25%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              E  K LE   + E  L  +   +  RG  VD A     ++ +  +     + +    
Sbjct: 489 KKLEDDKSLELFETIEMGLLPVLAAMERRGLFVDPAKLAEQSKELGADIASRVERIHE-A 547

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNR 280
            G   +     +L   LF   GL    L +T      T  +VLS           V   R
Sbjct: 548 AGETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYSTNAKVLSDLADTYQIVADVLEYR 607

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            RA   +   L+ L   +  D                                R H   +
Sbjct: 608 ERAKIKSTY-LDALPALIRGD-------------------------------HRIHTTFN 635

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       +SDP+   I     +   VR+      G   +  D + IE R+LA ++G+
Sbjct: 636 QTVAATGRLSSSDPNLQNIPTRSELGHRVRTAFTVPSGHVFLACDYSQIELRLLAHLSGD 695

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF++G D +  T +R+F V   +VT + R+  K +   + Y   A     +A++ 
Sbjct: 696 EHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGIVYGQQAY---GLATSL 752

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +       ++                                             +  +
Sbjct: 753 KIPRAEAQDMID--------------------------------------------RYFA 768

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
               +   L ++     E G A+    R           K ++       R L+      
Sbjct: 769 AYPGVRAYLDESVRIAHEKGYAVTMYGR-----------KRHIREFGQHNRQLIAF---G 814

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629
            R+ +N                     Q  + DI+   M+   K          ++L +H
Sbjct: 815 ERTAMNHPM------------------QGSAADIIKIAMIRVEKRLRKEGCAAKLILQIH 856

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE+  E P+ + E  + ++   M         +PL A+
Sbjct: 857 DELDLEVPNDEIEAVSRLVKETMEEVVE--LKVPLIAD 892


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/504 (16%), Positives = 153/504 (30%), Gaps = 131/504 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +  +G  VD      +    +    +++Q +  L  G   +    ++L
Sbjct: 483 EMELPLSDILARMEIQGIRVDQNRLIEMGLQFEERLKEIEQTIYELA-GEEFNINSPKQL 541

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL      +P    +   R  A             
Sbjct: 542 GVILFEKMNLPVIKKTKTGYSTAVDVLEKLASQSPIVECILEYRQLA------------- 588

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                             +             +    + H    Q +T      + DP+ 
Sbjct: 589 ------------------KLNSTYVEGLQTY-IDEKGKIHTRFVQNLTQTGRLSSQDPNL 629

Query: 357 LQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         VRS  + S    KL+ +D + IE RVLA MA +   ++AF+   D++ 
Sbjct: 630 QNIPIRTEEGRQVRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHT 689

Query: 411 TTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  R F +  P +VT   R   K +   + Y        +      +        +   
Sbjct: 690 NTAMRVFGIQNPEEVTSSMRRQAKAVNFGIVYGISDYGLSQ---NLNIPRKKAKEFID-- 744

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                + +     +   E     A ++ ++ T                            
Sbjct: 745 ----RYLEEFQGVKDYMETIVAEARQNDYVETLF-------------------------- 774

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                       +RR +P ++             + RS         R+ +N+       
Sbjct: 775 -----------HRRRYLPEIHSSNF---------NIRSFA------ERTAMNSP------ 802

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DIL   M+   +          ++L VHDE++ E P+ + E 
Sbjct: 803 ------------IQGTAADILKVAMIELDRELTERNFQAKLLLQVHDELIFEVPEEEVES 850

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
             S++  +M +  S    +PLKA+
Sbjct: 851 LQSLVEEVMENAVS--LSVPLKAD 872


>gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
 gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/539 (16%), Positives = 158/539 (29%), Gaps = 140/539 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL----------WYLDQT 191
           L  R          L   Y  G       ++ RL     +E+ L            +   
Sbjct: 443 LAGRPLAASDLPLELAIGYAAGRGQAAFRLWPRLHQQLQQEKLLRLYEDLELPVLRVLAA 502

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +  RG  VD+       + V+ E   L++E+  +  G     +   +L   LF    L  
Sbjct: 503 METRGIRVDLDFLQRFGREVEKELASLEEEIHEMA-GEPFLIQSPPQLAAILFDRLQLPT 561

Query: 252 EDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           +  T+     +T   VL++     P A +V   R                          
Sbjct: 562 QKKTKGRTAYSTDNEVLTALADYHPIAAKVIAYR-------------------------- 595

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361
                   +           Q  P   R H    Q +       + DP+   I     + 
Sbjct: 596 -----TLGKLKATYVDGLCKQVHPASGRIHTTFVQSVAATGRLSSRDPNLQNIPVRGELG 650

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   + S G   +  D + IE R+LA  + +   L+AF+ GED++  T A  F + P
Sbjct: 651 AQLRQAFLPSSGYIFISGDYSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHP 710

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             V+++ R   KV+   + Y   A     +A    ++       +    A          
Sbjct: 711 ELVSREMRRQAKVINFGIIYGMSAF---GLAKQLNVSQRLAQDFINRYFARH-------- 759

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIA 540
                                               + +     QA +   + G    + 
Sbjct: 760 ------------------------------------TGVKRYFDQALDTARQKGWVTTLL 783

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            +RR +P ++             S R+L        RS LNT                  
Sbjct: 784 GRRRPIPHLH------------SSNRNLRQE---AERSALNTPL---------------- 812

Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
             Q  + D++ + M+    A         ++L +HDE++ E P          L   M 
Sbjct: 813 --QGSAADLIKKAMLAVEAALVHEGLSGRLLLQIHDELLLEAPYQEQAATVDCLRRAME 869


>gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 883

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 104/634 (16%), Positives = 201/634 (31%), Gaps = 145/634 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110
           + +K  LE++ V     ++      L       I +      ++L       +     + 
Sbjct: 362 KQVKAILESSTVQKNVFDAKRTYVGLYRS---SITLQNVDFDMLLVSYLLNTTNNSNDVG 418

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG------D 164
            V +    ++ K +E  E+  +  K +          P   E +       K       D
Sbjct: 419 TVAKLHGFANIKTDE--EVYGKGAKKKI--------DPEAPEFFDHIVHKAKAIDQLHND 468

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +    +   +       E ++ ++   +   G  V+      +         +++Q +  
Sbjct: 469 MFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQ 528

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              G   +    ++L   LF +  L +   T+T     +   +KL P A  V        
Sbjct: 529 EA-GEEFNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIV-------- 579

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                               +  L +   S+                 S+ H    Q +T
Sbjct: 580 --------------------QNVLNYRQISKLQSTYIDGLLKVIHKNDSKVHTRYLQTLT 619

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                 + DP+   I         +R   + S E  ++  +D + IE RVLA + G++  
Sbjct: 620 QTGRLSSVDPNLQNIPVRSEEGRLIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNM 679

Query: 399 LKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            +AF  GED++ TT  R F +A    VT + R   K +   + Y         +A+ TG+
Sbjct: 680 QEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDY---GLANNTGI 736

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +       ++       + +     +   E+  E A    ++ T                
Sbjct: 737 SRKQAHQFIQ------RYFEEYPGVKKYTEDIVEFAKNHGYVET---------------- 774

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                IA +RR +P ++ +           + RS         R
Sbjct: 775 ---------------------IAHRRRYLPDIHSRNF---------NLRSFA------ER 798

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIV 633
           + +NT                   +Q  + DI+   M+N  +A       ++L VHDE++
Sbjct: 799 TAMNTP------------------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELI 840

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
            E P+ +      L   +M S       +PLK E
Sbjct: 841 FEVPNDEMETVEKLIPKVMDSAIK--LNIPLKVE 872


>gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 874

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/484 (16%), Positives = 150/484 (30%), Gaps = 125/484 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   + + G  VDV +     +    +  ++++E   L      +    ++L
Sbjct: 474 DLELPLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQLVDEPSLNLSSPKQL 533

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVE 296
              LF +  L     T+T         + L       F +++ A R        +  L++
Sbjct: 534 SVVLFDKLELPKTKKTKTGYSTAAGEIEALAETNPHPFLDKLLAHREYQKMKSTIEGLIK 593

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A+  +GR+                               H    Q +       ++DP+ 
Sbjct: 594 AVADNGRI-------------------------------HTTFKQTVASTGRLSSTDPNL 622

Query: 357 LQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +RS      G + L+ AD + IE RV+A ++ +   ++A+  GEDL+ 
Sbjct: 623 QNIPVRTEAGRKIRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDLHN 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              +R F+V   QVT + R   K M   L Y   A     +++   ++            
Sbjct: 683 FVGSRVFDVPIDQVTPELRRRVKAMSYGLVYGLSAY---GLSNQLSISAGEA-------- 731

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                               K        R   + + L    EQ
Sbjct: 732 ------------------------------------KSIMESYFERFGGVKSYLDNVVEQ 755

Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
              +G  + +  +RR +P +                                T+  ++ R
Sbjct: 756 ARRDGYTSTVFGRRRYLPEL--------------------------------TSDNRVAR 783

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNAS 645
           E      L   I Q  + DI+   M+   +A       ++L VHDE+V E    +     
Sbjct: 784 ENAERAALNAPI-QGSAADIIKVAMIRVDRALESFNSRVLLQVHDELVVEIAPGELAEVR 842

Query: 646 MLYH 649
            +  
Sbjct: 843 EIVE 846


>gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612]
          Length = 421

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/492 (17%), Positives = 155/492 (31%), Gaps = 110/492 (22%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   +   G  +D+     L++ +      ++ ++  L+     +    +
Sbjct: 2   YEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELS-EENFNLSSPK 60

Query: 238 KLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +L   LF +  L  +   +T     T   VL            +  +R      +   ++
Sbjct: 61  QLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLTKLLSTY-ID 119

Query: 293 TLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L   +N   GR+        A+ TGR S      QN+P  +                  
Sbjct: 120 ALPNLINEKTGRVHTNFNQ-AATATGRLSSSNPNLQNIPVRTE----------------- 161

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                    S  +R   +  +  KL+ AD + IE R+LA +A E+  + AF   +D++  
Sbjct: 162 --------FSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSL 213

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F      ++ D+R +GK +   + Y  G    +K A +TG+++      +     
Sbjct: 214 TAKLIFEKEV--ISSDERRVGKTINFGVIYGMG---IKKFARSTGVSIPEAKEFL--IKY 266

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E +     F     E     A+   ++ T   R ++                       
Sbjct: 267 KERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE----------------------- 299

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                               K DKN L  ++                      +   R  
Sbjct: 300 -------------------FKFDKNGLGRLIGKDPY-------------EIDLQSARRAG 327

Query: 592 TYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDE 641
                L       +Q  S DI+   M+   K          ++L VHDE++ E  PD+ E
Sbjct: 328 MEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEPDSLE 387

Query: 642 FNASMLYHLMTS 653
               ++   M  
Sbjct: 388 ITTKLVKKTMED 399


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/550 (15%), Positives = 185/550 (33%), Gaps = 71/550 (12%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALEN 63
           D ET   +D  K           ++ F+F + +         H+ +       L +ALE 
Sbjct: 324 DTET-DDLDTKKA---------NLVGFSFAYSEEKAYYVPIGHNYLGVGDQVGLDKALEA 373

Query: 64  TDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
                    + HN  F+ ++L     +D      + T++LA      S++     A +  
Sbjct: 374 ISKIFEHTIIGHNLKFDLSLLYRY-GID-EKKDIVDTMILAWLVDPGSSVGLESVAKRFL 431

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              M   KE + +                +          +   D    +     ++   
Sbjct: 432 DHDMIAYKETVKKGEDFSQVSIDAACKYASEDAVITYMVYFKLLDALRKQGASHLIDEAK 491

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E         +   G  +D+     L   ++    ++ Q++     G   +    ++L
Sbjct: 492 KVEFPFVNTLIHMEQAGIKIDIPFFEELKSSLEKRIDEITQKIYEYAGG-EFNINSTKQL 550

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L     T++     +  L + K   P    +   R      +         
Sbjct: 551 AAILFEKLKLPPLKKTKSGYSTNETTLQALKDKHPIIPLLLEYRELYKLKSTY------- 603

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                  +   + +         +             R +    Q  T      + +P+ 
Sbjct: 604 -------IDPLINY---------AKRDP-------KHRIYTSFIQTGTATGRLASKNPNL 640

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I     +   +R   IA EG+ L+  D + IE R+LA  + +   L+AF+ G D+++ 
Sbjct: 641 QNIPIKTELGRKIRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQKGRDIHME 700

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  + F     +  K++R I K +   L Y  G+   +K+A T G++      ++++  A
Sbjct: 701 TAIKLFGK---EHAKEKRNIAKSINFGLIYGMGS---RKLAETLGISTKEAKAIIESYFA 754

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +   +++   ++     H     ++ T  +R ++ +   H+  ++L   L +A    
Sbjct: 755 S--FPTVKSYLESVENFAKTHG----YVETLLKR-RRYFDFAHASGAQLAAYLREATNTV 807

Query: 532 IENGKAIIAR 541
            +   A + +
Sbjct: 808 FQGSAADLIK 817


>gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
 gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
          Length = 878

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 109/699 (15%), Positives = 218/699 (31%), Gaps = 177/699 (25%)

Query: 10  TRSPIDLTKCGICKYAED----VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVL 57
           + + +D        +A+D      ++        +  F + +    ++   +  ++   L
Sbjct: 304 SYTEVD--SLSADMFADDQFFYFEILGDNYHVENIIGFAWGNDKA-IYASTNLDLLKDDL 360

Query: 58  KEALENTDVTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +A     +        F+R+ VL + F +D+P         LA+               
Sbjct: 361 FKAALAKPIKTY----DFKRSKVLLSHFGVDLPAP--AFDSRLAKYL------------- 401

Query: 117 KLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWRLFGEYCKGDVTV----TRE 170
            LS+    E   +   +     ++ E +Y +          +   Y    + V     + 
Sbjct: 402 -LSTVDDNELSTIARLYTDYVLDSDEAVYGKGVKRAVPEKSVLLSYLARKIVVLNHSEKV 460

Query: 171 IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +  +L        L   EQ L  +   +   G  V  A    +         +L QE+  
Sbjct: 461 MLDKLTEHQQASLLFDMEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYD 520

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           L  G+  +    ++L   LF +  L       T+T     +   ++L P +  V      
Sbjct: 521 LA-GMEFNINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSK---- 575

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                    L++   ++             L +  + H    Q 
Sbjct: 576 ------------------------ILEYRQIAKLQSTYIVGLQDFIL-QDGKIHTRYLQD 610

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396
           +T      + DP+   I         +R   +   E + L+ +D + IE RVLA ++ ++
Sbjct: 611 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPETEDEVLLSSDYSQIELRVLAHISNDE 670

Query: 397 WKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             + AF  G D++ +T  R F +     VT + R   K +   + Y         +A+  
Sbjct: 671 HLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGIVYGISDY---GLANNL 727

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        ++T                                               
Sbjct: 728 GIPRKVAKQYIETYF--------------------------------------------E 743

Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           R   + N + +      + G    +  +RR++P +              + R+   R   
Sbjct: 744 RYPGIKNYMERVVRDAKDKGYVETLFHRRRELPDI--------------NSRNFNIRQF- 788

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628
             R+ +N+                   +Q  + DIL   M+N  KA  D      ++L V
Sbjct: 789 AERTAINSP------------------IQGSAADILKIAMINLDKALVDGQFKTKMLLQV 830

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDEI+ + P  + E   +++   M S       +PL A+
Sbjct: 831 HDEIILQVPKDELEAVKTLVKETMESAID--LSVPLIAD 867


>gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1]
 gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1]
          Length = 869

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 110/641 (17%), Positives = 204/641 (31%), Gaps = 148/641 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           Q     L++   +  ++N      +L A +N  I I      L LA     PS    +  
Sbjct: 352 QDFLNYLKDEKYSKYSYNIK--AQILSARWN-GIDIKGMNFDLQLASYILNPSLKDEMKS 408

Query: 115 ALKLSSQK-MEEGKELIARFCKGETHEC-LYDRNKPNHREAWRLFGEYCKGDVTVTRE-- 170
                    ++  +E+  +  K    E  L  R+  +  +A     +     +    +  
Sbjct: 409 ICDYYDYDSVQYEEEVFGKLAKKHIPEIDLLARHTVSKAKAIYDLKDEAIQRLKDEEQFD 468

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +++ L      E  + Y+   +   G  +D+ +   +    + +  ++++++  L     
Sbjct: 469 LYQNL------ELPVTYILADMEYVGAKIDIHVLKEMEMDFEQQIKQIEEDIYMLAD-KE 521

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF   GL     T+T     Q +L   + L P    +   RM      
Sbjct: 522 FNISSPKQLGEVLFERLGLPNGKKTKTGYSTSQDILEKIEGLHPIIPLIQKYRML----- 576

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                     ++           Q      + H   +Q +T   
Sbjct: 577 --------------------------TKLSSTYVKGLQEQVFA-DGKIHTIYNQALTQTG 609

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              + +P+   I         +R   I S    LV  D + IE R+LA +AG Q  ++AF
Sbjct: 610 RLSSIEPNLQNIPVRQEEGKLIRKAFIPSHDY-LVTFDYSQIELRILAHLAGVQSLIEAF 668

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              +D++  T A  F V   +VT + R   K +   + Y  G     K++   G++L   
Sbjct: 669 NQDKDIHTHTAALVFKVKDEEVTANMRRQAKAVNFGIIYGMGEF---KLSQQIGVSLKEA 725

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                             F R   E +PE  +                            
Sbjct: 726 KE----------------FIRRYFEEYPEIKV---------------------------- 741

Query: 523 ELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
            + Q  E     G  + +  ++R +P +    DKN ++                      
Sbjct: 742 YMDQIVEDCKNTGYVSTVLNRKRYIPTI---NDKNFMVRE-------------------- 778

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
               Q  R            +Q    DIL   MM             +++L VHDE++ +
Sbjct: 779 ----QARRFAMNSP------IQGSGADILKLAMMKVNQLMKDKHLKSEMILQVHDELIFD 828

Query: 636 T--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG-YESKRY 673
               + DE    ++   M    ++   +PLK +G Y S  Y
Sbjct: 829 VYKDELDEM-MKLIKSAMVE--AFQMDVPLKVDGAYASNWY 866


>gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 889

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 104/598 (17%), Positives = 177/598 (29%), Gaps = 159/598 (26%)

Query: 114 EALKLSSQKMEEGKELIARFCKGETHE----CLYDRNKPNHREAWRLFG----------- 158
           EA  +  + +     L A   K +        L  R+     +A    G           
Sbjct: 392 EARGMPLRGVTMDTALAAYLVKPDQRSFDLADLVVRHLGRELKAEEHAGGQGLLDFDTDE 451

Query: 159 EYCKGDVTV-TREIFKRLEPLSSK-------------EQELWYLDQTINDRGYCVDVALA 204
           E    D  V  R +     PLS +             E  L  +   +   G  VD    
Sbjct: 452 EVVGQDAMVRARAVLDLSVPLSEQLEATGGTELLRDIELPLVDILGAMERTGIAVDTDAL 511

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
             L    D +  +   +      G   +    ++L+T LF   GL     T+T       
Sbjct: 512 SALEADFDAKVREAQLDAYEAIGGDEINLGSPKQLQTVLFETLGLPKTRRTKTGYTTDAD 571

Query: 265 SNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           +   L  +    F   M   R A    + +  L++++  D R+  T              
Sbjct: 572 ALTDLYAKTQHPFLEAMLRHRDAMRLRVTVEGLIKSVAEDQRIHTT-------------- 617

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK- 375
                              Q I       ++DP+   +         +R   +  +G + 
Sbjct: 618 -----------------YIQTIAATGRLSSTDPNLQNVPIRTEAGRRIREVFVVGKGYES 660

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++G++  ++AF TGEDL+    AR F V P  VT + R+  K M
Sbjct: 661 LMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPEDVTAEMRSKVKAM 720

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y   A     ++    ++      L                              
Sbjct: 721 SYGLAYGLSAF---GLSKQLTISTGEAQGL------------------------------ 747

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKD 554
                           +  +R   + + L +   +    G  A +  +RR +P +     
Sbjct: 748 --------------MDEYFARFGGVRDYLREVVGEARATGYTATMLGRRRYLPDLTSDNR 793

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
           +               R  G  R  LN                    +Q  + DI+   M
Sbjct: 794 Q---------------RREGAERMALNAP------------------IQGSAADIIKLAM 820

Query: 615 MNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
                A         ++L VHDE+V E  + +  +   L    M         +PL  
Sbjct: 821 KGVDSALRESGAKSRMLLQVHDELVLEVAEGERDDVEALVRAEMGRAVE--MDVPLDV 876


>gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
 gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
          Length = 877

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/545 (15%), Positives = 181/545 (33%), Gaps = 72/545 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112
           +  K+ L + ++     ++   R ++   +   I I      L++A     P+       
Sbjct: 356 EAFKKWLADDEMRKYTFDAK--RAIVALKW-KGIEIQGIDFDLLIAAYLLDPADTDKDFR 412

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTV--- 167
             A    +  ++  +E+  +  K         R  P             +   DV     
Sbjct: 413 AVAKMKETHAVKSDEEVYGKGAK---------RAVPAQDIVAEHVARKVHVLYDVQKTFV 463

Query: 168 -TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              +  ++ E  +  E  L  +   +  +G  VD     ++   +     +++QE+  L 
Sbjct: 464 EELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELA 523

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF    L +   T+T       VL    +      ++ + R   
Sbjct: 524 -GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMEHHEIIPKILHYRQL- 581

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L++ ++ D                               S+ H   +Q++
Sbjct: 582 GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQVL 611

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
           T      ++DP+   I         +R   I S EG  +  AD + IE RVLA +A ++ 
Sbjct: 612 TQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKG 671

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF+   D++  T    F V   +VT + R   K +   + Y        +     G+
Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGI 728

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                   +      E++  +    +   +   + A +  ++ T   R ++   +  SR 
Sbjct: 729 TRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR-RRYIPEITSRN 781

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
             L +   +    T   G A    K+  + +    +++     L+L     L++      
Sbjct: 782 FNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEE 841

Query: 577 RSYLN 581
              L 
Sbjct: 842 VEKLE 846


>gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b]
 gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b]
          Length = 864

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 98/578 (16%), Positives = 191/578 (33%), Gaps = 66/578 (11%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y E+  VI  A   +   V + D        + +KE +E+   T +  ++      LK  
Sbjct: 320 YFEE-DVIGVAIASERG-VTIGDVTLLED--ERVKEWIEDETKTTICLDAKQTIIQLKRH 375

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK-GETHECL 142
               + +  +   LV      L     ++       +  +EE + +  +  K     E +
Sbjct: 376 ---QLALRGYEDLLVAGYLLNLSGG-TSLSSIAAHFTYPLEEDETVYGKGAKIKVPEENV 431

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
           +  +     +A+ ++  +    V    +  ++ E   + E+ L  +   +   G  V+V 
Sbjct: 432 FHAHLA--EKAYAIYTLF--ERVVSELKENEQTELYEALEKPLVSVLAEMEWAGIHVNVE 487

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259
               +   +      L+  +  L  G   +    ++L   LF +  L     T+T   T 
Sbjct: 488 TLQHMETDLRERLNALEITIHELA-GEPFNINSPKQLGVVLFEKLSLPPVKKTKTGYSTA 546

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL     L P   ++ + R    +     +  L + +  DG++               
Sbjct: 547 ADVLEKLAPLHPIIEKIMHYR-ELGKLQSTYVEGLQKVVKDDGKI--------------- 590

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-G 373
                           H    Q +T      + +P+   I         +R    ASE G
Sbjct: 591 ----------------HTRYTQTLTQTGRLSSVNPNLQNIPIRLEEGRRIRKAFTASEPG 634

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L   D + IE R++A M+ ++  + AF   ED++ +T A  F V+  +VT   R   K
Sbjct: 635 WVLYAVDYSQIELRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAK 694

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y        +     G+        + T    E++   + F     E   EH 
Sbjct: 695 AVNFGIIYGISDYGLSQ---NLGITRKEAQTFIDT--YFEQFPGVKTFMDAAIERAREHG 749

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
               F+ T  +R ++     HSR   L     +    T   G A    K+  + + +   
Sbjct: 750 ----FVETMLKR-RRNIPDIHSRNFNLRGFAERTAINTPIQGTAADIIKKAMIDVDHALN 804

Query: 554 DKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                  L+L     L++         L     +   +
Sbjct: 805 ASKLQSKLLLQVHDELIFEGPTEEMEALEKLVTEAMEQ 842


>gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 942

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/514 (15%), Positives = 161/514 (31%), Gaps = 131/514 (25%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +  +RL      E  L ++   +   G+ V+        Q +     ++ QE+  L  G
Sbjct: 533 MQEMERL--YQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLA-G 589

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL     T+T       VL     +     ++ + R+ A  
Sbjct: 590 TSFNLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAKL 649

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ +  +                                R H    Q +T 
Sbjct: 650 QSTY-VEGLLKVIRKE------------------------------TGRVHTRFHQTLTA 678

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                +S+P+   I         +R     + +   +  AD + IE R+LA ++G++  +
Sbjct: 679 TGRLSSSEPNLQNIPIRLEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 738

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF    D++  T A  F V P QVT   R   K +   + Y         +A    +  
Sbjct: 739 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDF---GLAQNLNIPQ 795

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 +++                                               +   
Sbjct: 796 KEAKRFIES--------------------------------------------YFEKFPG 811

Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   + +  +Q  E G    +  +RR +P ++ +  +          RS         R+
Sbjct: 812 VKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQ---------LRSFA------ERT 856

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
            +NT                   +Q  + D++   M+   +A         ++L VHDE+
Sbjct: 857 AMNTP------------------IQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDEL 898

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E P  +     +L      N +    +PLK +
Sbjct: 899 IFECPKDELAALEVLVRDNMEN-AMTLSVPLKVD 931


>gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 857

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 132/389 (33%), Gaps = 45/389 (11%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             EQ L  +   +   G  +D      + + +  +  KL  E+     G   +    ++L
Sbjct: 457 EVEQPLIEVLAEMEKNGISIDEENWKKVRKSMKEKEEKLLLEIYREA-GEEFNVNSPKQL 515

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF + G+     T+T         + L                              
Sbjct: 516 SHILFDKMGMPTGKKTKTGYSTAADVLESLAIDYP------------------------- 550

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
               ++  L++   ++         P        R H   +Q++T      +SDP+   I
Sbjct: 551 ---FVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNI 607

Query: 360 I-----SDCVRSCVIASEGKKL-VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +RS  +  EG    + +D + +E RVLA M+G++  ++AFE  ED++  T 
Sbjct: 608 PVRTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTA 667

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F V   +VT +QR+  K +   + Y         ++   G++       +KT    +
Sbjct: 668 SEVFGVPFEEVTSEQRSHAKAVNFGIIYGISDF---GLSKQLGISRKKADEYIKT--YLK 722

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +     F + M     E A +   + T   R  +     +S+  +  +   +    T  
Sbjct: 723 RYPGIHEFMKKMT----EEARKTGKVKTLFGRY-RDLPDINSKNFQRRSFAERTAMNTPI 777

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILML 562
            G A    K   + +    K       +L
Sbjct: 778 QGSAADIMKIAMIQVYEKMKKGKYKSRIL 806


>gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 191/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D     +  + +  A L + D   V H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
          Length = 876

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/575 (15%), Positives = 196/575 (34%), Gaps = 84/575 (14%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           +  +G  +     +         +  +E L +     V +++      LK      + ++
Sbjct: 332 IIGYGLSNQSGHYFIPTDIASESEGWQEWLRDESKEKVVYDAKKSIVALKRQ---GLELN 388

Query: 92  RWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 +LA     P+       +VG+   LSS + +E  ++  +  K            
Sbjct: 389 GVSFDSLLAAYIINPAQNHEDFASVGKEYGLSSVQSDE--QVYGKGAKQAVPN------- 439

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGY 197
                      E+     ++  ++ ++L+    +          E  L ++   +  +G 
Sbjct: 440 ------LDALSEHVARKASMLWDLTEKLKTALKENHQDALFFDLELPLAFILGEMEYQGV 493

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            VD     ++ + +  +  +L++++  L  G   +    ++L   LF +  L +   T+T
Sbjct: 494 KVDRTRLTSMGKELGGKLKELEEKIYDLA-GETFNINSPKQLGVILFEKLELPVIKKTKT 552

Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
                  VL   +        + + R    +     +  L++ ++ D             
Sbjct: 553 GYSTSADVLEKLQSKHEIVEYILHYRQL-GKLNSTYIEGLLKVIHED------------- 598

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
                              + H   +Q +T      ++DP+   I         +R   +
Sbjct: 599 -----------------SDKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV 641

Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
            S EG  +  AD + IE RVLA ++G++  ++AF+  ED++  T    F+V+   VT + 
Sbjct: 642 PSKEGWVIFAADYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEM 701

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   + Y        +   +  +        +      E + D     +   E+
Sbjct: 702 RRHAKAVNFGIVYGISDFGLSQ---SLNITRKEAGEFI------ERYLDTYPAVKEYMED 752

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               A +  ++ T   R ++   +  SR   L +   +    T   G A    K+  + +
Sbjct: 753 IVVEARDKGYVSTLLNR-RRYIPELTSRNFNLRSFGERTAMNTPIQGSAADIIKQAMIDM 811

Query: 549 VYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLNT 582
               +++N    L+L     L++    +    L T
Sbjct: 812 AKRLEEENIEAKLLLQVHDELIFEAPQSEIEKLKT 846


>gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
          Length = 879

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/500 (15%), Positives = 160/500 (32%), Gaps = 125/500 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L ++   +   G  VD          +    T+L+  +  L  G   +    ++L
Sbjct: 481 DIEMPLVFVLYDMECEGIMVDSKGLKEYGDKLATRITELENTIYELA-GTKFNINSPKQL 539

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            T LF +  L     T++         +KL P+   V                       
Sbjct: 540 GTVLFEDMKLPSGKKTKSGYSTAADVLEKLAPEYPVVAK--------------------- 578

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   L++   ++             L    R H   +Q IT      +++P+   I
Sbjct: 579 -------ILEYRQLTKLKSTYADGLAVYIL-EDGRIHGHFNQTITATGRISSTEPNLQNI 630

Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                I   +R   +   G   + AD + IE R+LA M+ +   + A+ T +D++  T +
Sbjct: 631 PVRMEIGRQIRKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITAS 690

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F+V   +VT+ QR+  K +   + Y   +    +      ++    +  ++       
Sbjct: 691 QVFHVPLDEVTRTQRSNAKAVNFGIIYGISSFGLSQ---DLSISRKEASEYIE------- 740

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                              +   +  + E  + L  + ++    
Sbjct: 741 ----------------------------------QYFATYPHIKEFIDGLVASAKK--NG 764

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
               +  +RR VP +      N +                  R  +N+            
Sbjct: 765 YSTTMFGRRRPVPEL---NSSNFMQRQF------------GERIAMNSP----------- 798

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY 648
                  +Q  + DI+   M+N ++A         ++L VHDE++ ET + +      + 
Sbjct: 799 -------IQGSAADIIKIAMINVSRALKDNNLKSKMILQVHDELLIETYEDE---VDAVR 848

Query: 649 HLMTSNPSWAKGL--PLKAE 666
            ++  N + A  L  PL+ +
Sbjct: 849 QILIDNMTNAASLRVPLEVD 868


>gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 105/648 (16%), Positives = 191/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D     +  + +  A L + D   V H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3]
          Length = 857

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 108/647 (16%), Positives = 194/647 (29%), Gaps = 160/647 (24%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           +   D  V L +          L   L+N DVT+   NS          +   +    W 
Sbjct: 345 YAVQDTTVYLLEDA-------ELLRLLDNADVTLDVFNSA-------PLYAKAMAAGGWG 390

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            ++V    +G  +A      A K    ++    +  A F               ++ +A 
Sbjct: 391 SSIVW---DGKLAAYLLDASASKYQISELIPAYKAAAAF------------TCTDYPDAG 435

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           RL   + +    +T      L   +  E  L  +   +   G  VD          +  E
Sbjct: 436 RLADLFARMKAEITACGEDAL--YNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREE 493

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQ 272
             ++   +   T     +    ++L   LF   GL     T+        + + L   P 
Sbjct: 494 LEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLREYPL 553

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R    +     +  L++ +  DG                              
Sbjct: 554 VEDVLQYR-AYQKLNSTYVEGLLKVIGEDG------------------------------ 582

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q         + +P+   I     +   +R+  +A  G  LV AD + IE R
Sbjct: 583 -RIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLVDADYSQIELR 641

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA + G++   +AF  GED++ +T A+ + +  ++VT   R+  K +   + Y  GA +
Sbjct: 642 ILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYS 701

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G+ +                                            +   
Sbjct: 702 LS---KDIGVTVKEA-----------------------------------------DAFL 717

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K +      VS     + +       NG       RR                 LP   S
Sbjct: 718 KNYLAAFPNVSG---YMDKTIADAKANGYVSTLFGRR---------------RTLPELAS 759

Query: 568 LVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKA 620
             +       R   NT                   +Q  + D++   M+         K 
Sbjct: 760 TNFNVRASGERMARNTP------------------IQGTAADVIKLAMVRVWKRLRDEKM 801

Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666
              ++LTVHDE++ E P+ +   A+ +L   M     +A  +PL  +
Sbjct: 802 ASRLILTVHDELIVEAPEVEAEQAARILREEMEGCVQYA--VPLSTD 846


>gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 867

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/515 (16%), Positives = 170/515 (33%), Gaps = 133/515 (25%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             RE+++        E  L +    + + G  VD     +    +  +  ++ + +    
Sbjct: 462 KERELYR------EIELPLVFTLHEMEESGILVDREALLSYGAELREKIGEIRERIYREA 515

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRA 283
            G   +    ++L   LF + GL     T+T         +KL+ +   A  +   R   
Sbjct: 516 -GEEFNLNSPQQLGQILFEKLGLPGGRKTKTGYSTAADVLEKLSEENQLASDILEYRT-Y 573

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           S+        L+  +  DGR+ G                                 +Q++
Sbjct: 574 SKLNSTYAEGLLSWIREDGRIHGHF-------------------------------NQMV 602

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      ++DP+   I          R   I  EG   + AD + +E R+LA ++G++  
Sbjct: 603 TATGRISSTDPNLQNIPIRTEMGRRFRRVFIPKEGSIFIDADYSQVELRILAALSGDEKL 662

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A++  +D++  T +  F+V  ++VT   R   K +   + Y   A     ++    ++
Sbjct: 663 IRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVYGISAF---GLSEGLSIS 719

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +      E + +     +   +   E A +  ++ T                 
Sbjct: 720 RQEAKEYI------ERYFETYPGVKKFLDGEVELARKQGYVRT----------------- 756

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                               I  ++R VP +              S  +   R  G  R 
Sbjct: 757 --------------------IFGRKRPVPDI--------------SSSNFARRSFGE-RV 781

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
            +N+                   +Q  + DI+ + M   ++A         IVL VHDE+
Sbjct: 782 AMNSP------------------IQGSAADIMKKAMNEVSRALKAGAFRARIVLQVHDEL 823

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + ETP+ +      L  L   N +    +PL A+ 
Sbjct: 824 LLETPEKEADQVEELLILSMQNAA-KLRVPLIADA 857


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 105/611 (17%), Positives = 215/611 (35%), Gaps = 100/611 (16%)

Query: 7   DFETRS-PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVLKE 59
           D ET S    + K           ++ F+F F+++        H      + V  +  K 
Sbjct: 337 DTETTSLDTKIAK-----------IVGFSFCFNENSAYYIPIAHSYLGAPEQVSIEDAKS 385

Query: 60  ALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           A+    +  ++  N  ++  ++K  FN DI ++ +  T++LA      S +     A   
Sbjct: 386 AINKLNNFKLIVQNFKYDFDIIK--FNFDIELNLFADTIILAWLLDSSSKVGLDALAKNY 443

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-KRLEP 177
               M   K+++    KG+    +   N             Y   D  +T +I+ K LE 
Sbjct: 444 FDHTMIAFKDVVK---KGDDFSTVDISN----------ACNYAAEDALMTYKIYFKLLEE 490

Query: 178 LSSK--EQ--------ELWYLDQTINDR--GYCVDVALAHTLNQIVDVERTKLDQELESL 225
              +  E         E  ++D  IN +  G  +D  +   L         +L +++  L
Sbjct: 491 FKKQNCEHLLKIANDYEFKFIDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTKKIHEL 550

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L   LF   GL      +T       VL+           + + R  
Sbjct: 551 A-GTKFNINSPKQLGVILFENLGLTASKKGKTGYSTNEVVLNKLVDSHEIIPVILDYR-E 608

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A +     +  L+E  ++D                               ++ +    Q 
Sbjct: 609 AYKLQSTYIEPLLELASNDSE-----------------------------NKIYTSFLQT 639

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            T      + +P+   I         +R   IA +G KLV  D + IE R+LA  + ++ 
Sbjct: 640 GTATGRLSSKNPNLQNIPVKSSAGREIRKAFIARDGYKLVGIDYSQIELRLLAHFSKDKA 699

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF +  D++  T  + F     +    +R I K +   L Y  G+   +K+A T  +
Sbjct: 700 LVDAFNSDLDIHSQTAVKIFG---EEKASQKRNIAKTINFGLLYGMGS---KKLADTLKI 753

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                   + +      + +A    +   ++  + A+E+ ++ T  +R ++ +    +  
Sbjct: 754 TPKEAKVYIDS------YFEAFTNVKEYMKSIEDFALENGYVETLIKR-RRIFDFNAANT 806

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +    L +A   T   G A    K   + +    K+  +L ++L     L++      +
Sbjct: 807 MQRIGYLREAV-NTKFQGSAADLIKLSMIKIFEKYKNNEDLKMILQIHDELIFEVKNEKQ 865

Query: 578 SYLNTTTRQLT 588
             +    +++ 
Sbjct: 866 DEITNDLKKIM 876


>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
          Length = 888

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 113/666 (16%), Positives = 201/666 (30%), Gaps = 160/666 (24%)

Query: 27  DVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
           DV ++  +   D     + D           L  AL +  + + +      +T +KA  +
Sbjct: 343 DVRILAVSGAPD--EAWVVDLAEAGEADVSKLSSALRSKTLILHS-----SKTQIKAWRS 395

Query: 86  LDIPIHRWICTLVLARSNGLPS---------ALKAVGEALKLSSQKMEEGKELIARFCKG 136
           L + +        LA    +P          AL+  G  L   S    +  +L       
Sbjct: 396 LGLDVDDVAGDTALAAYLLVPDQRSYELQQIALERAGIEL---SDAESDSGQLALDLESD 452

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
           +T +    R          L     K D     ++++        E  L  +   +   G
Sbjct: 453 QTAQTHGHRAAALLEVHDILA---AKIDEANMSQVYR------DIELPLVPVLARMELAG 503

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD A    L       +     EL     G   +    ++L+T LF E  +     T+
Sbjct: 504 IAVDEAGLSGLIDEFTK-QANASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTKRTK 562

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL---VEAMNSDGRLRGTLQFLGA 313
           T       +  +L  +    F   + A R +     T+   ++ +  DGR+  T      
Sbjct: 563 TGYTTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQTVVGLLKTVAEDGRIHTT------ 616

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 617 -------------------------YQQTVAATGRLSSLDPNLQNIPVRTESGRRIREIF 651

Query: 369 IASE---GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
           IA       +L+ AD + IE R++A ++G+   ++AF+ GEDL+    ++ F V   +V 
Sbjct: 652 IADPHVDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVD 711

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R+  K M   L Y   A    +  +                                
Sbjct: 712 SAMRSKVKAMSYGLVYGLSAYGLSRQLAI------------------------------- 740

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRR 544
                             +  K    Q   R   + + L +  EQ   NG    I  +RR
Sbjct: 741 ----------------GVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRR 784

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            +P ++                                + R+  R+      L   I Q 
Sbjct: 785 YLPALH--------------------------------SDRRQLRDMAERAALNAPI-QG 811

Query: 605 VSRDILAEGMMNATKAGYD----IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAK 659
            + DI+   M+  +    D    ++L VHDEI+ +  P+  +    ++   M S      
Sbjct: 812 SAADIMKIAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSAFE--L 869

Query: 660 GLPLKA 665
            +PL  
Sbjct: 870 DVPLDV 875


>gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7]
          Length = 877

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/558 (15%), Positives = 172/558 (30%), Gaps = 141/558 (25%)

Query: 136 GETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQE 184
               + L         E     FG Y      +  + +  L+    +          E  
Sbjct: 423 PSRADWLKKMTLTEASEKEKESFGHYLAYSAMIPVQAYSTLKKRLEETGMDRLFDEIEMP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L Y    +   G  V+          +     +L++ +  L  G   +    ++L   LF
Sbjct: 483 LVYALYDMEKAGIAVEKDALAEYGSRLTGRIDELEKNIYELA-GESFNINSPKQLGIILF 541

Query: 245 LETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            + GL     T+T       +L   +   P   Q+   R                     
Sbjct: 542 EKLGLPFAKKTKTGYSTSADILEKLRTYDPIVGQILEYRQL------------------- 582

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359
                       ++              P   R H + +Q IT      +++P+   I  
Sbjct: 583 ------------TKLKSTYADGLAGYIRPDDQRIHGKFNQTITATGRISSTEPNLQNIPV 630

Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R   +  E    V AD + IE RVLA MAG++  ++A++  +D++  T ++ 
Sbjct: 631 RMELGRLIRKVFVPKEDCIFVNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRMTASQV 690

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F+    +VT  QR+  K +   + Y   +    +  S T                    +
Sbjct: 691 FHTPFDEVTPAQRSNAKAVNFGIVYGISSFGLSQDLSITK-------------------K 731

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           +AEN+ +     +                           +      L ++ E   E G 
Sbjct: 732 EAENYIQQYFRTY-------------------------PGIKAF---LDRSVEDAKEKGY 763

Query: 537 AI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
           A+ +  +RR VP +      N +                  R  +N+             
Sbjct: 764 AVTLFGRRRPVPEL---LSSNFMQRSF------------GERIAMNSP------------ 796

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCE-TPDTDEFNASMLY 648
                 +Q  + DI+   M+   +          ++L +HDE++ E   D  +   ++L 
Sbjct: 797 ------IQGTAADIIKIAMVRVNRRLKRQHMKSRLILQIHDELLIEAVLDEVDAVKAILK 850

Query: 649 HLMTSNPSWAKGLPLKAE 666
             M    + A  +PL+ +
Sbjct: 851 EEMEHAATLA--VPLEID 866


>gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f]
 gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f]
          Length = 891

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/604 (15%), Positives = 173/604 (28%), Gaps = 131/604 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
           L + D     H+       L         +        LA    LP   +       L+ 
Sbjct: 376 LADPDRAKAGHDLKGPMLALAEA---GFTLAGVTSDTALAAYLALPGQRSFDLADLTLRY 432

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             ++++   E   +           D  + +   A          D  + R    RL  L
Sbjct: 433 LHRELKSDTETNGQLT--LDGSGEADEAEADAIRARAALELAAALDGDLERRSAARL--L 488

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L ++   +   G   D      L +    E   +  +   L  G   +    ++
Sbjct: 489 REMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAHGL-VGRSFNLGSPKQ 547

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+  LF E  L      +T       +   L  Q+                         
Sbjct: 548 LQQILFDELALPKTKKIKTGYTTDADALAWLATQSDHPL--------------------- 586

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                +   L     +R       + P   +    R H   +Q+I       ++DP+   
Sbjct: 587 -----IPVLLHHRDVARLKTVVDSLIPM--IDDAGRIHTTFNQMIAATGRLSSTDPNLQN 639

Query: 359 II-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   +   G   L+ AD + IE R++A ++G+   ++AF +GEDL+   
Sbjct: 640 IPIRTPQGRQIRRAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHTFV 699

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            A++F++  ++V  + R   K M   L Y   A     +A   G+  +            
Sbjct: 700 AAQAFDLPVSEVDPELRRRIKAMSYGLAYGLSAF---GLAGQLGIAPDEA---------- 746

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                             ++      +R   + + L    +Q  
Sbjct: 747 ----------------------------------REHMDAYFARFGGVRDFLRGVVDQAR 772

Query: 533 ENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            +G    I  +RR +P +                                T+     R+ 
Sbjct: 773 RDGYTETIMGRRRYLPDL--------------------------------TSDNTQRRQM 800

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNAS 645
                L   I Q  + DI+   M+   +A         ++L VHDE+V E    +     
Sbjct: 801 AERMALNAPI-QGSAADIIKIAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVEVE 859

Query: 646 MLYH 649
            L  
Sbjct: 860 ALVR 863


>gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
 gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
          Length = 875

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 202/674 (29%), Gaps = 171/674 (25%)

Query: 21  ICKYAEDVCVILFA--------FGFDDHPVELWDCVH-----DPVMPQVLKEALENTDVT 67
           +  Y E   ++LF+          F D  V   D             +V KE  E+ ++ 
Sbjct: 326 LYLYFELEDIVLFSKSRIKILYVSFKDE-VYRIDFETLLKNTKEEFIEVCKEIFESKEIK 384

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKME 124
            + ++S   RTVL+    L +  +     + LA     P   +    +L    L      
Sbjct: 385 KITYDSKNPRTVLRK---LGMEFNGINFDINLAAYLIDPVRKEYEISSLASEYLFKNINR 441

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           E ++L     K +    +                E    D  +   ++K        EQ 
Sbjct: 442 EDEDL-----KIKEVNIM---------PKLYKVLEEKIKDQDIEELLYK-------IEQP 480

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L      +   G+ VD  +   L +    E      E+ S++     +    ++L   LF
Sbjct: 481 LTETLSAMETEGFKVDKNILLQLEKKFKGEIESTQSEIYSMS-EEEFNINSPKQLGKILF 539

Query: 245 LETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L +   T+T       VL   +   P   ++   R    +     +  L  A++ D
Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDED 598

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360
           G++                                   +Q +T      +++P+   I  
Sbjct: 599 GKIHS-------------------------------NFNQTVTATGRLSSTEPNLQNIPI 627

Query: 361 ----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I + E   ++ AD + IE RVLA ++ ++  + AF   +D++  T + 
Sbjct: 628 KYEMGREIRKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKTASE 687

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R+  K +   + Y  G  +  +      +        +      E +
Sbjct: 688 VFKVPIDEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERY 742

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            + + +                                          L    E+ I+ G
Sbjct: 743 PNVKIY------------------------------------------LENIVEEAIQKG 760

Query: 536 -KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
               I  +RR +  V                           R  +N+            
Sbjct: 761 YVTTILNRRRYIKEVKSSNK---------------IVKAAGERLAMNSP----------- 794

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASML 647
                  +Q  + DI+   M+N  +          I+L VHDE++     D  E   +++
Sbjct: 795 -------IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALV 847

Query: 648 YHLMTSNPSWAKGL 661
              M        GL
Sbjct: 848 KREMEQVLELKVGL 861


>gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
          Length = 887

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 103/633 (16%), Positives = 198/633 (31%), Gaps = 143/633 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +KE LEN  +     N+      L      L      ++    L  +N   + L  +  
Sbjct: 365 EIKELLENPKIKKDTFNAKAHYVALHRQGIELHGNGFDFLLVSYLLNTNDNSNDLGQLAH 424

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-----VTR 169
                  + +E  E+  +            R+ P+ R  +          +      +T 
Sbjct: 425 EHNYYQVQSDE--EVYGK---------GKSRHLPDDRSVFFTHLVQKGMAIEQLKHPLTD 473

Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           ++ +       +  E+ L ++   +   G  VD      +   +     +L+Q + +   
Sbjct: 474 QLHENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMGSKLKERLAELEQAIYNEA- 532

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    ++L T LF +  L +   T+T     +   +KL  +A              
Sbjct: 533 GEEFNINSTKQLGTILFEKMKLPVIKKTKTGYSTSVEVLEKLQGRAPI------------ 580

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                           +   L +   S+                  + H    Q +T   
Sbjct: 581 ----------------IDNILVYRQISKIQSTYITGLLKVIHSSDQKIHTRYLQTLTQTG 624

Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R     S  G K+  +D + +E RVLA + G++   + 
Sbjct: 625 RLSSVDPNLQNIPVRLEEGRKIRRAFKPSQPGWKIFSSDYSQVELRVLAHVTGDRNLQQD 684

Query: 402 FETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F  G+D++ +T  R F++    +VT + R   K +   + Y           S  GL+ N
Sbjct: 685 FIDGKDIHESTARRIFHLLPGEKVTPNMRRQAKAVNFGIVYG---------ISDYGLSQN 735

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                 + +   + +       +   EN  + A +  ++ T                   
Sbjct: 736 IHVTRKQAHEFIQSYFKEFPGVQEYIENIVKLAKKQGYVET------------------- 776

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             +  +RR +P +  K             RS         R+ +
Sbjct: 777 ------------------LTHRRRYLPEINSKNFSR---------RSFA------ERTAM 803

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVC 634
           NT                   +Q  + DI+   M+N      KAG    ++L +HDE++ 
Sbjct: 804 NTP------------------IQGSAADIIKIAMINMNEQLQKAGLKAKMLLQIHDELIF 845

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           E P+ +      L   +M S       +PLK E
Sbjct: 846 EAPEEEIDQLRELVPKVMDSAVK--LDVPLKVE 876


>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
 gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
          Length = 875

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 104/669 (15%), Positives = 204/669 (30%), Gaps = 161/669 (24%)

Query: 21  ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68
           +  Y E   ++LF+       +      V   D             +V KE  E+ ++  
Sbjct: 326 LYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLKNTKEQFIEVCKEIFESKEIKK 385

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + +++   RT+L+    L I  +     + LA     P   +    +L  S    +    
Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLA-SEYLFKNI-- 439

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                      E L  +      + +++  E         +++ + L  +   EQ L   
Sbjct: 440 -------NREDEILKIKEVNMMPKLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G+ VD  +   L +    E      E+ S++     +    ++L   LF +  
Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +   P   ++   R    +     +  L  A++ DG++ 
Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                                             +Q +T      +++P+   I      
Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631

Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V
Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT   R   K +   + Y  G  +  +      +        +      E + +  
Sbjct: 692 PIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   EN  E A                              + + +  TI N     
Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVNTILN----- 767

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             +RR +  V                           R  +N+                 
Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794

Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
             +Q  + DI+   M+N  +          I+L VHDE++     D  E   +++   M 
Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKKEME 852

Query: 653 SNPSWAKGL 661
                  GL
Sbjct: 853 QVLELKVGL 861


>gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 924

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 107/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 407 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 466

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 467 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 526

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 527 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 585

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 586 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 621

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 622 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 676

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 677 LEQGRLIRKAFTPSQEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 736

Query: 417 FNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +     VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 737 FGIDKAEDVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 787

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 788 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 812

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 813 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 843

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q  + DIL   M+N   A         ++L VHDEIV E P+ +      L  
Sbjct: 844 ------IQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTAIKKLVK 897

Query: 650 -LMTSNPSWAKGLPLKAE 666
             M +    A  +PL+A+
Sbjct: 898 DTMEAAVDLA--VPLRAD 913


>gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 878

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 104/668 (15%), Positives = 207/668 (30%), Gaps = 153/668 (22%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +    ++   +  ++   L +A     +        F+R+ 
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSK 378

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           VL +   +D+P         LA+          +    +L +  + +  E +  + KG  
Sbjct: 379 VLLSHLGVDLPAP--AFDSRLAKYLLSTVDDNELSTIARLYTDYVLDSDEAV--YGKGVK 434

Query: 139 HECLYDRNKPNHREAWRL---FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
                     +H     +   + E    D     +    L      EQ L  +   +   
Sbjct: 435 RAVPKKAVLLSHLARKIVVLNYSEKVMLDKLTEHQQASLLF---DMEQPLANVLAKMEIA 491

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--ED 253
           G  V  A    +         +L QE+  L  G+  +    ++L   LF +  L      
Sbjct: 492 GISVKKATLQEMEASNQAVIDELTQEIYDLA-GMEFNINSPKQLGELLFDKMQLPTSYTK 550

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            T+T     +   ++L P +  V                               L++   
Sbjct: 551 KTKTGYSTAVDVLERLAPISPIVSK----------------------------ILEYRQI 582

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
           ++             L +  + H    Q +T      + DP+   I         +R   
Sbjct: 583 AKLQSTYIVGLQDFIL-QDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 641

Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
           +   E + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +     VT 
Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A+  G+        ++T                  
Sbjct: 702 NDRRNAKAVNFGIVYGISDY---GLANNLGIPRKVAKQYIETYF---------------- 742

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRD 545
                                        R   + N + +      + G    +  +RR+
Sbjct: 743 ----------------------------ERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +P +              + R+   R     R+ +N+                   +Q  
Sbjct: 775 LPDI--------------NSRNFNIRQF-AERTAINSP------------------IQGS 801

Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658
           + DIL   M+N  KA  D      ++L VHDEI+ + P  + E   +++   M S     
Sbjct: 802 AADILKIAMINLDKALVDGQFKTKMLLQVHDEIILQVPKDELEAVKTLVKETMESAID-- 859

Query: 659 KGLPLKAE 666
             +PL A+
Sbjct: 860 LSVPLIAD 867


>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
 gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
          Length = 875

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 205/670 (30%), Gaps = 163/670 (24%)

Query: 21  ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68
           +  Y E   ++LF+       +      V   D             +V KE  E+ ++  
Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLIKNTKEQFIEVCKEIFESKEIKK 385

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + +++   RT+L+    L I  +     + LA     P   +   E   L+S+ + +   
Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               F K +    +           +++  E         +++ + L  +   EQ L   
Sbjct: 441 REDEFLKIKEVNIM--------PNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G+ VD  +   L +    E      E+ S++     +    ++L   LF +  
Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +   P   ++   R    +     +  L  A++ DG++ 
Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                                             +Q +T      +++P+   I      
Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631

Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V
Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT   R   K +   + Y  G  +  +      +        +             
Sbjct: 692 PIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDAYL--------- 739

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAI 538
                                           +++  V      L    E+ IE G  + 
Sbjct: 740 --------------------------------ERYPNVKL---YLENIVEEAIEKGYVST 764

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
           I  +RR +  V                           R  +N+                
Sbjct: 765 ILNRRRYIKEVKSSNK---------------IVKAAGERLAMNSP--------------- 794

Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651
              +Q  + DI+   M+N  +          I+L VHDE++      + E   +++   M
Sbjct: 795 ---IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEM 851

Query: 652 TSNPSWAKGL 661
                   GL
Sbjct: 852 EQVLELKVGL 861


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 185/572 (32%), Gaps = 63/572 (11%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
             Y E+    L  F   +     +      V  +V KE  EN +      +S   R V+ 
Sbjct: 329 DNYHEEP---LLGFSIVNETGSYFIPKDIAVESEVFKEWAENDEQKKWLFDSK--RAVVA 383

Query: 82  -ACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
                +++         +LA     P  +   V    K     +    E +  + KG   
Sbjct: 384 LRWQGIEL--KGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESV--YGKGAKR 439

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
               +     H     L  +  +  +    E   +LE     E  L  +   +   G  V
Sbjct: 440 AVPSEDVLSEHLVRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKV 499

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           DV     + + +  +  + ++++  +  G   +    ++L   LF + GL +   T+T  
Sbjct: 500 DVDRLKRMGEELGAKLKEYEEKIHEIA-GEPFNINSPKQLGVILFEKIGLPVVKKTKTGY 558

Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                VL            +   R                     G+L+ T    G  + 
Sbjct: 559 STSADVLEKLADKHDIVDYILQYRQ-------------------IGKLQSTYI-EGLLKV 598

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
            R           P   + H   +Q +T      ++DP+   I         +R   + S
Sbjct: 599 TR-----------PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPS 647

Query: 372 E-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           E    +  AD + IE RVLA ++ +Q  ++AF    D++  T    F+VA  +VT   R 
Sbjct: 648 EKDWLIFAADYSQIELRVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRR 707

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y        +     G+        +       ++ ++    +   E+  
Sbjct: 708 QAKAVNFGIVYGISDYGLSQ---NLGITRKEAGAFID------QYLESFQGVKAYMEDSV 758

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           + A +  ++ T   R ++   +  SR   + +   +    T   G A    K+  + +  
Sbjct: 759 QDAKQKGYVTTLMHR-RRYIPELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAA 817

Query: 551 MKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLN 581
             K+K     L+L     L++         L 
Sbjct: 818 KLKEKQLKARLLLQVHDELIFEAPQEEIEILE 849


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 131/437 (29%), Gaps = 71/437 (16%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGEA 115
            L + ++  V H+  F   +L       I +       +LA     P       +     
Sbjct: 384 LLADPELPKVGHDVKFCEVIL---LRHRIGLVGVSFDTMLASYLLDPEGKNQLHELAERE 440

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L    Q ++E                   R                  DV     +  RL
Sbjct: 441 LGAKMQTLDEVA---------PKRRGQAQRALDEIELGEASSYGAAFADV--ALSLTDRL 489

Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P          L   E  L  +   +   G  VD      L   +  E   L+Q+   +
Sbjct: 490 RPRLRAEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREI 549

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L+  LF E  L  +  T+T   T   VL +  +  P    V  +R  
Sbjct: 550 -VGHDINLASPKQLEAVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHR-- 606

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          ++         P    P   R H    Q 
Sbjct: 607 -----------------------------AIAKLKGTYVDALPRLVHPGTGRIHTRWGQA 637

Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +       + DP+   I     +   +R   +A  G  +V AD + IE RVLA ++ +  
Sbjct: 638 VAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPV 697

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF TG+D++V T    F V  A VT + R   K +   + Y  G  A    A    +
Sbjct: 698 LVDAFRTGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESAL---AKRLDI 754

Query: 458 NLNTFAHLVKTNSAPEE 474
           +    A  +    A   
Sbjct: 755 SRAEAARFIDAYFARYR 771



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 597 LTENIVQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
                +Q  + D+L   M+   +    G  +VLTVHDE+  E P +  +   + +   M 
Sbjct: 818 AQNTPIQGTAADLLKLAMVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAME 877

Query: 653 SNPSWAKGLPLKAE 666
           S       +PL  +
Sbjct: 878 SVFP--LDVPLVVD 889


>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 994

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 106/639 (16%), Positives = 190/639 (29%), Gaps = 150/639 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------LPSALK 110
           LK  LE+  V  V  N  ++ TVL       I +     T+V++          +P    
Sbjct: 466 LKPLLEDDSVLKVGQNIKYDLTVLARH---GIAVAPIDDTMVMSFCLDAGRGEPMPFGHG 522

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A +       + K++     K  +                     Y   D  VT  
Sbjct: 523 MDELAERHLGHTTIKFKDVAGTGKKAIS----------FAEVPLPDATRYAAEDAEVTWR 572

Query: 171 IFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +   L P  ++E          + L  +  T+   G  VD     TL+         L+ 
Sbjct: 573 LHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHGIKVDRERLATLSGEFATRIAALES 632

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQAIQV 276
            +     G   +    ++L   LF + G            +T Q VL +      +   +
Sbjct: 633 VIHEKA-GTTFTIGSPKQLGEVLFDKLGYKGGKKGKSGQYSTDQSVLETLASQGAEVATL 691

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                + S+                                            P   R H
Sbjct: 692 VLEWRQLSK------------------------------LKSTYTDALQAAINPATGRVH 721

Query: 337 EELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                +        ++DP+   I     I   +R   +A  G  L+ AD + IE R+ A 
Sbjct: 722 TSYSLVGAQTGRLSSNDPNLQNIPVRTEIGRQIRDAFVAEPGHVLLSADYSQIELRLAAH 781

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A      +AF  GED++  T    F     +V +D R   K +  A+ Y          
Sbjct: 782 IADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAILYGIS------- 830

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                                          RW              +GT+ +  +    
Sbjct: 831 -------------------------------RWGLATR---------LGTSADEAQAMID 850

Query: 512 QKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +   R   +   +H+  E   + G    +  ++   P +  K                  
Sbjct: 851 RYFERFPGIQRYIHETLEHVRDRGYSETLFGRKTWFPRIASKTQA--------------- 895

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
              G+ R+ +N   +         G   + I +A++R  +   ++ A      ++L VHD
Sbjct: 896 ERAGSERAAINAPIQ---------GTCADIIKRAMAR--MTPALVEAGLGHVRMLLQVHD 944

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAE 666
           E+V E P++D   A +++  +M +    A    +PL  E
Sbjct: 945 ELVFELPESDVAAASAVIERVMATAAEPAVKLSVPLGVE 983


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 111/665 (16%), Positives = 211/665 (31%), Gaps = 160/665 (24%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFER-TVLKACFNLD 87
           +I FA+G       L+      ++   + KE LE T + +      F+R  VL +   + 
Sbjct: 338 IIGFAWGTKG---HLYASTDTGLLQTPIFKEFLEKTPLKVY----DFKRAKVLLSHLGIT 390

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +          LA+          +     L SQ      E++        +     +  
Sbjct: 391 L--QNPAFDSRLAKYLLSTVEDNEISTIASLYSQIALPLDEVV--------YGKGAKKAI 440

Query: 148 PNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           P                +          +   +L+ L   EQ L  +   +   G  V+ 
Sbjct: 441 PEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVER 500

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTC 259
                +    +    +L QE+  L  G   +    ++L   LF +  L LE    T+T  
Sbjct: 501 QTLQDMQVENEAVLERLTQEIYELA-GEEFNINSPKQLGVILFEKLELPLEYTKKTKTGY 559

Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                VL     + P   ++   R  A   +   +  L + +  DG++            
Sbjct: 560 STAVDVLERLAPIAPIVSKILEYRQIAKIQSTY-VIGLQDWILEDGKI------------ 606

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                              H    Q +T      + DP+   I         +R   +  
Sbjct: 607 -------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPE 647

Query: 372 E-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429
           E    L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  VT + R
Sbjct: 648 EENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDR 707

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +++  G++       ++T                     
Sbjct: 708 RNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIETYF------------------- 745

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPL 548
                                     R   + + + +   +  + G    + ++RR++P 
Sbjct: 746 -------------------------ERYPGIKDYMERVVREARDKGYVETLFKRRREIPD 780

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
           +              + R+   R     R+ +N+                   +Q  + D
Sbjct: 781 I--------------NSRNFNVRGF-AERTAINSP------------------IQGSAAD 807

Query: 609 ILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661
           IL   M++  +A         ++L VHDEIV + P  +      L    M S       +
Sbjct: 808 ILKIAMIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESAIELV--V 865

Query: 662 PLKAE 666
           PL+A+
Sbjct: 866 PLEAD 870


>gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
 gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
          Length = 910

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/519 (17%), Positives = 158/519 (30%), Gaps = 133/519 (25%)

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           D  V      RL  L   E  L  +   +   G  VDV     L+  +       +Q   
Sbjct: 495 DAEVAARGGARL--LRDVELPLIDVLAAMERAGIAVDVDTLVDLSAELAAHVKATEQAAY 552

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            +  G   +    ++L+  LF E  L      +T       + + L  Q        +  
Sbjct: 553 QV-VGREFNLGSPKQLQQILFEELRLPKTKRIKTGYTTDAEALQNLLAQTGHPLLEHLLR 611

Query: 284 SRSAVLKLNTLVEA----MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            R  V +L   V++    ++++GR+  T                                
Sbjct: 612 HRD-VSRLKATVDSLIPMVDAEGRIHTT-------------------------------F 639

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMA 393
           +Q++       + DP+   I         +R   +  +G + L+ AD + IE R++A ++
Sbjct: 640 NQMVAATGRLSSQDPNLQNIPIRTAEGRRIRQAFVVGKGYEALLTADYSQIEMRIMAHLS 699

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +Q  ++AF +G D +  T A  F V P QV  + R   K M   L Y   A    +   
Sbjct: 700 QDQALIEAFRSGFDFHAATAASVFGVRPEQVDAEMRRRVKAMNYGLAYGLSAYGLSQ--- 756

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+  +                                              +    + 
Sbjct: 757 QLGITPDEA--------------------------------------------RVLMEEY 772

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
             R   + + L    E+   +G       RR                 LP          
Sbjct: 773 FRRFGGVRDYLRTVVERARRDGYTETLLGRRRY---------------LP---------- 807

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
                 L +  RQ  RE      L   I Q  + DI+   M+   +A         ++L 
Sbjct: 808 -----DLTSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLGVDRALRAAGAKSRLLLQ 860

Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
           VHDE+V E    +  +   +    M    ++   +PL+ 
Sbjct: 861 VHDELVLEVAPGERADVEEIVRREMGH--AYELSVPLEV 897


>gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 849

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 75/486 (15%), Positives = 152/486 (31%), Gaps = 121/486 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  L +   ++   G  V      +  + + V   +L++++     G   +    +
Sbjct: 449 YTQIELPLIFTLDSMEKWGISVKSEELKSYGEKLSVRIGELEKQIWQQA-GEEFNINSPK 507

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           ++   LF + GL     T+T         +KL P+   V +                   
Sbjct: 508 QMGVILFEKLGLKGGKKTKTGYSTAADILEKLAPEYPIVKD------------------- 548

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L++   ++             +    R H   +Q IT      +++P+  
Sbjct: 549 ---------ILEYRQLAKLKSTYADGL-VGEIAEDGRIHSTFNQTITATGRISSTEPNLQ 598

Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I     +   +R   +  EG   + AD + IE RVLA M+G++  ++A++  +D++  T
Sbjct: 599 NIPVRMELGRLIRKVFVPEEGYVFLDADYSQIELRVLAHMSGDEKLIQAYKEAQDIHRHT 658

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +  F+V   +VT  QR   K +   + Y   +    +      +     A  ++     
Sbjct: 659 ASEVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAEYIE--RYF 713

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           E +   + F     +   E   E  ++                                 
Sbjct: 714 ETYPKIKGFL----DGLVEEGKEKGYV--------------------------------- 736

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                 +  +RR +P              L SG  +        R  +N+          
Sbjct: 737 ----TTMFGRRRPIP-------------ELKSGNFMQRSF--GERVAMNSP--------- 768

Query: 593 YGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE-TPDTDEFNAS 645
                    +Q  + DI+   M               +VL VHDE++ E   +     ++
Sbjct: 769 ---------IQGTAADIIKIAMNRVYRRLKDENLKSRLVLQVHDELLIETCKEEIPQVSA 819

Query: 646 MLYHLM 651
           +L   M
Sbjct: 820 ILEEEM 825


>gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
 gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 908

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 110/674 (16%), Positives = 201/674 (29%), Gaps = 153/674 (22%)

Query: 19  CGICK-YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSY 74
            G  K Y  D   +       D      D     + P+    L   L +       H + 
Sbjct: 348 VGTHKAYDADATALAIVAADGDG--RYID--TSTLTPEDEAALASWLADPGPPKALHEAK 403

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
                +         +        LA     P        +  L    +      +    
Sbjct: 404 L---AMHDLAGRGWTLRGVTSDTALAAYLVRPGQ-----RSFTLDDLAVRYLHRELRAET 455

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188
             +    L D +     +A +         + +   + + L        LS  E  +   
Sbjct: 456 PEQQQLSLLDDSDGVDEQAVQTVILRACAVLDLADALDQELARIDSLSLLSRMELPVQRT 515

Query: 189 DQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
              +   G  VD+ +   L ++  D  R   +     +  G   +    ++L+  LF E 
Sbjct: 516 LAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYSVI--GKQINLGSPKQLQAVLFDEL 573

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRL 304
            +     T+T       + + L  +    F   + A R A    + ++ L+ ++ SDGR+
Sbjct: 574 EMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRI 633

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
             T                                +Q I       +++P+   I     
Sbjct: 634 HTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTE 662

Query: 361 -SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   +  EG  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F+
Sbjct: 663 AGRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFS 722

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V   +VT + R   K M   L Y   A     +A    ++                    
Sbjct: 723 VPIDEVTPELRRRVKAMSYGLAYGLSAY---GLAQQLKISTEEA---------------- 763

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                       K    Q   R   + + L    +Q  ++G   
Sbjct: 764 ----------------------------KVQMEQYFDRFGGVRDYLRDVVDQARKDGYTS 795

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
               RR                 LP   S                + +  RE      L 
Sbjct: 796 TVLGRRRY---------------LPELDS----------------SNRQVREAAERAALN 824

Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651
             I Q  + DI+   M+N  +A         I+L VHDE++ E  + ++     L    M
Sbjct: 825 API-QGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLVREHM 883

Query: 652 TSNPSWAKGLPLKA 665
            +  ++   +PL+ 
Sbjct: 884 GN--AYPLDVPLEV 895


>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 899

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 112/632 (17%), Positives = 194/632 (30%), Gaps = 151/632 (23%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            L +  V    H    +  VL      + + +      + L      PS  +       L
Sbjct: 383 LLADPAVKKGGH----DLKVLSLLLGGMKLTLQGAHDDVELLSYLLNPSRRE-----HAL 433

Query: 119 SSQKMEE-GKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRL 175
                E  G EL A      T E    R    H   E    +G        +   +++ L
Sbjct: 434 PDLSRERLGLELPAL---PATAEGKKGRPLVEHSAEEVAAAYGARADAARRLAPRLWEEL 490

Query: 176 EPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E +         E  L  +   +  +G  +D A+  TL+  VD E     + + +L  G 
Sbjct: 491 EAIGLAALARDMELPLLPILARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLA-GQ 549

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +     +L   L+ +  L +    +T   T Q VL    +  P    +   R   S+ 
Sbjct: 550 EFNVGSNPQLAQVLYEKLQLPILKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKL 608

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               L+TL   +  D                                R H    Q  T  
Sbjct: 609 KSTYLDTLPGLVAKD-------------------------------GRIHTTYHQAATAT 637

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +SDP+   I     +   +R   +A  G +LV AD + +E R+LA +A +   L A
Sbjct: 638 GRLSSSDPNLQNIPVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDA 697

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+  ED++  T A  F V P +V +DQR + K +   + Y               +++  
Sbjct: 698 FQHDEDIHSRTAAEIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLST---RLSISVEE 754

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              +++                                                R + + 
Sbjct: 755 ARDIIERYFT--------------------------------------------RYAGIR 770

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             L    E+  + G       RR             L+  L S    V +        + 
Sbjct: 771 RYLEDTVERARKTGYVETMFGRRR------------LMADLNSKNRAVAQAAERAAINM- 817

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635
                               +Q  + D++ + M+   +A         ++L VHDE++ E
Sbjct: 818 -------------------PIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFE 858

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
            P+ +      L    M+S  +    +PLK +
Sbjct: 859 APEAEVDRVKALARQCMSSVAT--LKVPLKVD 888


>gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7]
 gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7]
          Length = 870

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 98/655 (14%), Positives = 200/655 (30%), Gaps = 128/655 (19%)

Query: 31  ILFAFG-FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++  F  ++D          D +     K  + +  +    ++       + A     + 
Sbjct: 329 MIVGFAVYNDSEAYFI-GTEDALNCTNFKNFISDKKIEKYGYDIK---KSINAAKWHGLE 384

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRNKP 148
           I  ++  L LA     PS    +    +      +   +E+  +  K +  E        
Sbjct: 385 IENYVFDLQLASYILNPSLKDEIRSVCEYYEYYDVFYDEEVYGKGAKKKVPETSRV---A 441

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            H           K           + E     E  +  +   +  +G  VD  +   L 
Sbjct: 442 EHLIKQAKAIYILKDQAIEKLNNENQFELYKDVEMPVAKILARMEFQGAKVDSVVLKQLE 501

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265
           +    E   L++E+ +L      +    ++L   LF + GL     T+T       +L+ 
Sbjct: 502 EQFGREINILEKEIHTLA-NREFNIASPKQLGEVLFEDLGLPNGKKTKTGYSTSVDILNK 560

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K + P   +V                                 +   S+          
Sbjct: 561 LKDIHPIIDKVLK-------------------------------YRTLSKLYSTYIIGLQ 589

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
            Q      + H   +Q +T      ++DP+   I         +R   +      LV  D
Sbjct: 590 DQVF-IDGKIHTIYNQALTQTGRLSSTDPNLQNIPVKTPEGKLIRKAFVPEYDY-LVSFD 647

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +AG +  +KAF   +D++  T +  F V   QV    R   K +   + 
Sbjct: 648 YSQIELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFGII 707

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y         +A   G+++      +K       + +     +   +++ +   ++ ++ 
Sbjct: 708 YGMSDF---GLAEQVGVSVGEAREFIK------RYFENYPEIKLYMDSNIDFCKKNGYVT 758

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           T   R K+  R+ + +                                 YM+++      
Sbjct: 759 TMLNR-KRFIREINEKN--------------------------------YMRQEFG---- 781

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R  +N+  +         G   + I  A+   I  + ++   + 
Sbjct: 782 ---------------KRLAMNSPIQ---------GSAADIIKVAM---IKVDELLKKHQL 814

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG-YESKRY 673
              ++L VHDE++ +    +      +    MT+       + LKAEG Y    Y
Sbjct: 815 KSKMILQVHDELIFDVYQEELQEVMEIVAKGMTTAIK--MDVELKAEGSYAVNWY 867


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 108/641 (16%), Positives = 198/641 (30%), Gaps = 157/641 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  V  N  ++ TVL+    +++  +    T+V++       +L   G   
Sbjct: 403 LKPLLEDDAVLKVGQNLKYDMTVLRRH-GIEVVPYD--DTIVMSFDLEAGKSLSGHGM-- 457

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKRL 175
                  E  ++ +   C          +N+ +  E       EY   D  VT  ++KR 
Sbjct: 458 ------DEAARQHLGHECISFKDVVGTGKNQISFAEVPLPRATEYAAEDADVTLRLWKRF 511

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +   + E          + L  +   +  +G  VD      L+         L+ E+  +
Sbjct: 512 KARIANEGTNRVYELVDRPLVGVIAKMEHQGIKVDREALSRLSAEFTAGIAALETEIHEI 571

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKL-TPQAIQVFNNR 280
             G   +    ++L   LF + G            +T   +L   K    P A +V   R
Sbjct: 572 A-GQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKAQGAPIAAKVLEWR 630

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+           Q      R H    
Sbjct: 631 QL-------------------------------SKLKSTYTDALQAQINKDSGRVHTSYS 659

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                     ++DP+   I         +R   +A  G  ++ AD + IE R+ A MA  
Sbjct: 660 LTGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGHVILAADYSQIELRLAAHMADV 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  GED++  T  + F     +V ++ R   K +  A+ Y         +A   
Sbjct: 720 PALKEAFAAGEDIHAATAEQLFG----EVNRETRGRAKTINFAILYGIS---RWGLAGRL 772

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            ++ +                +A++      E  P  +I                     
Sbjct: 773 EISAD----------------EAQDMISRYYERFPGISI--------------------- 795

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                   +++  E+  E G       R+     +  + K ++               G 
Sbjct: 796 -------YINETIEKARERGYTETLFGRKT----WFPRIKASIQHERQ----------GA 834

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTV 628
            R+ +N                    +Q  S DI+   M+    A       G  ++L V
Sbjct: 835 ERAAINAP------------------IQGTSADIIKRAMVRMGPALEAAGLSGVRMLLQV 876

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSW--AKGLPLKAE 666
           HDE+V E P+ D +  ++++  +M +         +PL  E
Sbjct: 877 HDELVFEVPEGDVDAASAVVRRVMETAAEPIVTLSVPLGVE 917


>gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
          Length = 875

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 102/670 (15%), Positives = 201/670 (30%), Gaps = 163/670 (24%)

Query: 21  ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68
           +  Y E   ++LF+       +      V   D             +V KE  E+ ++  
Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYKIDFEMLLNNTKEQFIEVCKEIFESKEIKK 385

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + +++   RT+L+    L I  +     + LA     P   +    +L  S    +    
Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIEFDINLAAYLIDPVRKEYEISSLA-SEYLFKNI-- 439

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                      E L  +        +++  E         +++ + L  +   EQ L   
Sbjct: 440 -------NREDEFLRIKEVNIMPNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G+ VD  +   L +    E      E+ S++     +    ++L   LF +  
Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +   P   ++   R    +     +  L  A++ DG++ 
Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                                             +Q +T      +++P+   I      
Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631

Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V
Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT   R   K +   + Y  G  +  +      +        +             
Sbjct: 692 PIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDAYL--------- 739

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAI 538
                                           +++  V      L    E+ IE G  + 
Sbjct: 740 --------------------------------ERYPNVKL---YLENIVEEAIEKGYVST 764

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
           I  +RR +  V                           R  +N+                
Sbjct: 765 ILNRRRYIKEVKSSNK---------------IVKAAGERLAMNSP--------------- 794

Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651
              +Q  + DI+   M+N  +          I+L VHDE++      + E   +++   M
Sbjct: 795 ---IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEM 851

Query: 652 TSNPSWAKGL 661
                   GL
Sbjct: 852 EQVLELKVGL 861


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 118/594 (19%), Positives = 206/594 (34%), Gaps = 85/594 (14%)

Query: 6   ID-FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57
           ID  +T S ID     +  ++    ++  +   ++         H         ++ + L
Sbjct: 314 IDEVKTFS-IDTETTSLDPFS--AKLVGVSISTNEGEAYYIPISHVSENNLTKEIVLKFL 370

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           KE LE     IV  N  F+  V        I         ++A     P          A
Sbjct: 371 KEILECERYNIVGQNLKFDYKV---FMVNGIEPQIPHFDTMVAAYLINPEERRYNLEELA 427

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           LK    KM   +EL+           +          +     EY   DV +T  ++  L
Sbjct: 428 LKYLGYKMISFEELV--------DNNMPLFGNDFSFISIEKAAEYSCEDVDITFRLYSYL 479

Query: 176 EPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                + +EL+Y        +   +   G   DV     L++  + E  KL++++  ++ 
Sbjct: 480 SKYIGEMKELFYNIEMPLINVLAQMELNGVYFDVDYLKELSKRYEEEMKKLEEKIFEIS- 538

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           G   +    +++   LF +  L +   T T    T   VL    K    A  +   R   
Sbjct: 539 GEQFNINSSKQVAEILFEKLKLPIVKKTATGRNSTNAEVLEELAKDYEIARLILEYRK-- 596

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                    Q L ++        V    N+   +R H    Q  
Sbjct: 597 ------------------------FQKLKSTYVDSIPSSV----NIT-TNRVHSSFHQTG 627

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
           T      +S P+   +         +R  V    E   +V AD + IE RVLA M+ ++ 
Sbjct: 628 TSTGRLSSSAPNLQNLPTRSEEGKEIRHAVKPQFENWYIVGADYSQIELRVLAHMSEDEK 687

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AFE   D++  T ++ FNV+   VT+D R IGK++  A+ Y         ++   GL
Sbjct: 688 LLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIYGISPY---GLSRRIGL 744

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           N+N    ++   +  + ++    F +   +   ++     F+ T   R K+   Q   + 
Sbjct: 745 NVNETKKIID--NYFKYYQGVFEFIKKTIDFAKKNG----FVKTLFGR-KRFIPQLKLKN 797

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570
             L  E  +    T   G A    K   V +   +K++     L+L     LV+
Sbjct: 798 KNLIQEGERIAINTPVQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHDELVF 851


>gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 866

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/517 (14%), Positives = 157/517 (30%), Gaps = 76/517 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           Q +K  LE+  +    HN+ F + +L       I +       +L      P+       
Sbjct: 366 QWIKALLESAVIKKYLHNAKFIQVLL---LRHGIELRGVAGDTMLLAYVDDPAF------ 416

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                     EG EL A   K        + N        R      +G +         
Sbjct: 417 ----------EGDELDACLKKHLQLNIAEN-NLAALVNTIRELYFQLEGQIPAELR---- 461

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            E L   E  +  +   +   G  V+ +    +++ +       ++ +  L  G   +  
Sbjct: 462 -ELLQEVEMPMSEVLARMEFCGVKVERSTLARISEELASGIAGHEERIFELA-GSSFNIN 519

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF + GL +    +T       VL    +       + N R           
Sbjct: 520 SPKQLGKVLFEDLGLRVIKKGKTGYSTGAEVLEELYQEHEIIAHILNYRQL--------- 570

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                                 S+              P   R H    Q  T      +
Sbjct: 571 ----------------------SKIKSTYADALQELIHPETGRVHTIFKQAQTATGRLSS 608

Query: 352 SDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            +P+   I         +R   +A      ++ AD + I+ R LA ++G++  ++ F++G
Sbjct: 609 VEPNLQNIPIRMEEGRRIRQAFVAPGPDWLIMAADYSQIDLRSLAHISGDERLIETFKSG 668

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T    F+V    V  + R   K +   + Y         +A  TG++       
Sbjct: 669 VDIHTRTAVEIFHVPVEWVDSELRRRAKAVNFGIIYGISDF---GLARDTGVSRKEARKY 725

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +        + ++    +   E+  E      ++ T  +R ++   + ++R   +     
Sbjct: 726 IDN------YLNSYPGVKKYMEDIVEFGRRHGYVETLLKR-RRYLPELNARNKMVQAFGR 778

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
           +    T   G +    K   + +    + +     +L
Sbjct: 779 RMALNTPVQGTSADIIKLAMIKVDEEIRKRRLQARLL 815


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
          Length = 931

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 104/648 (16%), Positives = 189/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D     H++      +
Sbjct: 378 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 434

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 435 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 486

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 487 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 546

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 547 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 605

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 606 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 659

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 660 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 694

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 695 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 754

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 755 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 782

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 783 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 826

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 827 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 855

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 856 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 903


>gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
 gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
          Length = 907

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/480 (15%), Positives = 150/480 (31%), Gaps = 126/480 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L +    +   G  +D A      + + V   +L+  +     G   +    ++L  
Sbjct: 511 EMPLVFTLADMEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEA-GEEFNINSPKQLGV 569

Query: 242 WLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  +     T+T   T   VL       P    +   R      +    + L   +
Sbjct: 570 ILFEKLEMPYGKKTKTGYSTAADVLDKLAPEYPIVADILEYRQLTKLKSTYA-DGLANYI 628

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H   +Q IT      +++P+   
Sbjct: 629 KEDG-------------------------------RIHTSFNQTITVTGRLSSTEPNLQN 657

Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I     +   +R   + ++G   + AD + IE RVLA M+G++  ++A+   +D++  T 
Sbjct: 658 IPMRIELGRLIRKAFLPAKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITA 717

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           ++ F++   +VT  QR   K +   + Y   +    +      ++    A  ++      
Sbjct: 718 SQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISKKEAAEYIERYF--- 771

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 + + ++    + L +  ++   
Sbjct: 772 --------------------------------------ETYPKIKTFLDGLVEDAKK--N 791

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                +  +RR VP +              S  + + R  G  R  +N            
Sbjct: 792 GYVTTMFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNAP---------- 826

Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + DI+   M+              +++TVHDE++ ET + +      +
Sbjct: 827 --------IQGTAADIIKIAMIRVHDRLLEEHLKSRLIITVHDELLIETAEDEIDRVKEI 878


>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
 gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
          Length = 914

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 111/631 (17%), Positives = 190/631 (30%), Gaps = 143/631 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L + L + +     H +      + A       +        LA     P          
Sbjct: 392 LGDWLADAEQPKALHEAK---WAMHALRGRGWVLGGLTSDTALAAYLVRPGQ-----RTF 443

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTVTRE 170
            L    +   +  +     G+    L D       EA                 +    +
Sbjct: 444 NLDDLSLRYLRRELRVEETGQEQLSLLDDADQVDAEAAETEILSARAVLDLAAALDTELD 503

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             +    LS  E  L  +   I   G  VD    H L      E ++  +    +  G  
Sbjct: 504 NIESTALLSEMELPLLEVLAVIEASGIAVDGTHLHDLQSRFAAEVSEAAEAAYGVI-GKQ 562

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV-- 288
            +    ++L+  LF E  +     T+T       + + L  +    F   + A R A   
Sbjct: 563 INLGSPKQLQVVLFDELEMPKTKKTKTGYTTDAEALQNLFEKTSHPFLEHLLAHRDATRL 622

Query: 289 -LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
            + ++ L++ +  DGR+  T                                +Q +    
Sbjct: 623 KVTVDGLLKTVAEDGRIHTT-------------------------------FNQTVAATG 651

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401
              +++P+   I         +R   +  EG   L+ AD + IE R++A ++G+   ++A
Sbjct: 652 RLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDAGLIEA 711

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F TGEDL+    AR+F V   +VT + R   K M   L Y   A     +A+   ++   
Sbjct: 712 FNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAF---GLAAQLKISTEE 768

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                        K       +R   + 
Sbjct: 769 A--------------------------------------------KSQMEAYFARFGGVR 784

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           + LH+  EQ  ++G       RR                 LP                L 
Sbjct: 785 DYLHEVVEQARKDGYTSTLYGRRRY---------------LP---------------DLT 814

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCE 635
           +  RQ  RE      L   I Q  + DI+   M+N  ++         ++L VHDE+V E
Sbjct: 815 SDNRQ-RREVAERAALNAPI-QGTAADIIKVAMINVQRSLREAGLKSRMLLQVHDELVLE 872

Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
             D++      L    M+S       +PL  
Sbjct: 873 VVDSEREQVEQLVRDKMSSAIE--LSVPLDV 901


>gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4]
          Length = 877

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 99/599 (16%), Positives = 183/599 (30%), Gaps = 154/599 (25%)

Query: 95  CTLVLARSNGLPSAL------------KAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           C    A    L  +L             A   A  L+  K   G + IAR   G T    
Sbjct: 367 CRTGHAWVLDLKHSLPFAKLSYGDTVYDAGVAAYLLNPLKDTYGYDDIARDVLGMTVPSK 426

Query: 143 YDRNKPNH-----REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWY 187
            D  K         +    F               K L    + E            L Y
Sbjct: 427 TDLIKKMSYKDACAKEQDNFTRMAGLMAYTAFAAGKPLSERLAAEGMEDLYRNIELPLIY 486

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
               + D G  V           +  +   L++E+  +T G   +    ++L   LF + 
Sbjct: 487 TLFHMEDEGIAVRREELTAYGGKLKKQIAVLEKEIWEMT-GQEFNINSPKQLGEILFEKM 545

Query: 248 GLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            +     T+T   T   VL       P   ++ + R     ++    + L   +  DGR+
Sbjct: 546 QIKGGKKTKTGYSTAADVLEKLAPDYPVIQKILDYRQYTKLNSTYA-DGLGTYIKEDGRI 604

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI----- 359
                                          H   +Q IT      +++P+   I     
Sbjct: 605 -------------------------------HSRFNQTITATGRISSTEPNLQNIPIRME 633

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +   +R   +   G   + AD + IE RVLA M+G++  ++A++T +D++  T ++ F++
Sbjct: 634 LGREIRKVFVPRNGFLFLDADYSQIELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHI 693

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT  QR   K +   + Y   A     ++    ++       ++     E +   +
Sbjct: 694 PLNEVTPLQRRNAKAVNFGIVYGISAF---GLSEDLSISRKEAMEYIE--RYFETYPQVK 748

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
           +F     ++   HA E  ++                                       +
Sbjct: 749 SFL----DSLVAHAKEQGYV-------------------------------------TTM 767

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             +RR VP +   K  N +                  R  +N+                 
Sbjct: 768 FGRRRPVPEL---KSSNFMQRSF------------GERVAMNSP---------------- 796

Query: 600 NIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLM 651
             +Q  + DI+   M+              ++L VHDE++ ET + ++     +L   M
Sbjct: 797 --IQGTAADIIKIAMIRVDERLRRENLRSRLILQVHDELLIETAEDEKETVMKILSEEM 853


>gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
 gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
          Length = 886

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 106/635 (16%), Positives = 199/635 (31%), Gaps = 151/635 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LEN D+     ++      L+    L + +    C L+L         L     + 
Sbjct: 367 LKGLLENADIAKQVFDAKRTFVALQR---LAVTLTGVDCDLLLGSYL-----LNTYDNSN 418

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-KRL 175
            L    ME G             +      K    +   +F  +         ++  +  
Sbjct: 419 DLGRLAMEHG-----YHQVATDEDVYGKGAKAAIPDDDDVFFSHLARKARAIEQLRPQIF 473

Query: 176 EPLSSKEQELWYLD---------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           + L+  EQ   Y D           +   G  V+ +    +      +  +++Q + +  
Sbjct: 474 KDLADNEQTDLYRDIELPMAFVLARMEVAGITVEASELEAMGSKFTEQLAEIEQTIYNEA 533

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF + GL +   T+T       VL       P A  +   R  A
Sbjct: 534 -GEEFNIGSPKQLGHILFEKMGLPVIKKTKTGYSTAVGVLEKLAAEAPIAENILKYRKIA 592

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
              +   +  L++ ++                              P   + H    Q +
Sbjct: 593 KIQSTY-VEGLLKVIH------------------------------PDDQKVHTRYLQTL 621

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
           T      + DP+   I         +R   + S    ++  +D + IE RVLA M+ ++ 
Sbjct: 622 TQTGRLSSVDPNLQNIPVRNEEGRAIRKAFVPSHPDWEIFSSDYSQIELRVLAHMSHDKQ 681

Query: 398 KLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +AF  G+D++  T  R F +    +VT + R   K +   + Y        +     G
Sbjct: 682 MQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVNFGIVYGISDFGLSQ---NIG 738

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       + T      + +     +   E   + A E  ++ T               
Sbjct: 739 ISRKQAKAFIDT------YFEEYPGVKAYTERMVQQAHELGYVET--------------- 777

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                                 IA +RR +P +              + R+   R     
Sbjct: 778 ----------------------IAHRRRYLPDI--------------NSRNFNQRSF-AE 800

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI----VLTVHDEI 632
           R+ +NT                   +Q  + DI+   M+   +A  D+    +L VHDE+
Sbjct: 801 RTAMNTP------------------IQGSAADIIKIAMIRMEQALKDMQATMLLQVHDEL 842

Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           + E P ++    + L   +M S       +PLK E
Sbjct: 843 IFEAPASEIDTLAKLVPSVMDSAIE--LEIPLKVE 875


>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 897

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 149/482 (30%), Gaps = 121/482 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E+ L  +   +   G  VD      ++         L+  + +   G   +     +L
Sbjct: 498 EVERPLVPVLVEMERAGILVDRGAMEGMSAEFGKAMQDLEARIHA-AAGHPFNVASTREL 556

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF+E  L +    +T         +KL  Q                           
Sbjct: 557 AQVLFVELELPVVKRLKTGPSTDQDVLEKLAEQHALP----------------------- 593

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                R  L+    S+         P    P   R H    Q         +SDP+   I
Sbjct: 594 -----RLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSSSDPNLQNI 648

Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                +S  +R   +A  G +L+ AD + IE R+LA  + +   L+AF   ED++  T A
Sbjct: 649 PVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAA 708

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
            +F VAP QVT DQR I KV+   + Y   A    +      L  +    ++        
Sbjct: 709 ETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQ---RLDLPPSEAQGIIDRYFT--- 762

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                                    R + +   +  A E+    
Sbjct: 763 -----------------------------------------RYAGVRRYIEWAVEEARAK 781

Query: 535 GKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           G++  +  + R +P +  +          P+ R+         R+ +NT           
Sbjct: 782 GESRTLFGRARAMPEIAARN---------PALRNAA------ERTAINTP---------- 816

Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + D++   M+         +    ++L VHDE+V E P+ +      L
Sbjct: 817 --------IQGTAADVVKIAMIRVHAALAQERREARLLLQVHDELVLEVPERELEPVEAL 868

Query: 648 YH 649
             
Sbjct: 869 VR 870


>gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
 gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
          Length = 888

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 94/505 (18%), Positives = 168/505 (33%), Gaps = 130/505 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           ++  E  L  +   +   G  +D          V      L+ ++ +L  G   + R  +
Sbjct: 487 VAELEMPLVPVLVAMERAGIGIDKTAFAAFADEVAGRLAILETDIVALA-GKPFNPRSSQ 545

Query: 238 KLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           +L   L+ + GL     T     +T Q  L       P   ++   R +  +     L  
Sbjct: 546 QLGEILYTDLGLKAHGKTPGGAASTSQDALERLAGAHPLVDRILEFR-KLEKLRSTYLAP 604

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           +    + D R+                               H  L+ + T      +S+
Sbjct: 605 MPALADRDSRI-------------------------------HTTLNNMATATGRLSSSN 633

Query: 354 PDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           P+   I         +R+C  A  G +LV AD + IE RVLA ++GE   L AF  G D+
Sbjct: 634 PNLQNIPIRGEFGRRMRACFTAGPGNRLVAADYSQIELRVLAHLSGESALLDAFAHGADI 693

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T A  F+     +  D+R   K +   L Y  G    QK++   G+ L+     +  
Sbjct: 694 HARTAAILFDKPEEAIAPDERRQAKTINFGLLYGMGP---QKLSRDLGIKLDAAKAFI-- 748

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                    + ++   +S  +  + +A 
Sbjct: 749 ---------------------------------------ARYFERLPGLSAFYEGIVEAA 769

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           ++                          +  +   +GR  +  D+G+  S     + Q  
Sbjct: 770 KR--------------------------DGFVTTLAGRRRLLPDIGSANS---QLSSQAR 800

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEF 642
           R+          +VQ  + DI+   M+ A            +VL +HDE++ ETP+    
Sbjct: 801 RQ------AINTVVQGGAADIIKMAMLAAAGDAALAGLGAVLVLQIHDELLLETPEAAAK 854

Query: 643 NA-SMLYHLMTSNPSWAKGLPLKAE 666
            A + L  LMT   S A  +PL+ +
Sbjct: 855 EAGARLAGLMTGVISLA--VPLEVD 877


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
          Length = 879

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 105/621 (16%), Positives = 202/621 (32%), Gaps = 156/621 (25%)

Query: 75  FERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
           F+R+ VL +   +D+P  +      LA           +    +L +    E  E++   
Sbjct: 375 FKRSKVLLSHLGIDLP--QANYDARLANYLLSNIEDNELATIARLHTNLNMEADEVV--- 429

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY------ 187
                +     R  P     +       +  V     I  +L    +KE++L++      
Sbjct: 430 -----YGKGVKRAFPEDEALFDHLARKIQVLVDSKAVILDKLA--VNKEEDLYFDIELPL 482

Query: 188 --LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G  V+      + +        L +E+  +  G   +    ++L + LF 
Sbjct: 483 ANVLAKMEIAGITVNKTALQEMAEQNKAVIESLTEEIYEMA-GEEFNINSPKQLGSILFE 541

Query: 246 ETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           +  L LE    T+T       VL     + P   ++ + R   S+     +  L + + S
Sbjct: 542 KMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQ-ISKLQSTYVIGLQDYIMS 600

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DG++                               H    Q +T      +SDP+   I 
Sbjct: 601 DGKI-------------------------------HTRYIQDLTQTGRLSSSDPNLQNIP 629

Query: 361 -----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   +R   + S E   L+ +D + IE RVLA ++G++  + AF+   D++ +T  
Sbjct: 630 VRLEQGRLIRKAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAM 689

Query: 415 RSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           R F +   + VT + R   K +   + Y         +++  G+        ++T     
Sbjct: 690 RVFGIEKEEDVTPNDRRNAKAVNFGIVYGISDF---GLSNNLGITRKKAKDYIETY---- 742

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                     R   +   +        +
Sbjct: 743 ----------------------------------------FERYPGIKEYMETVVRDARD 762

Query: 534 NG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
            G    +  +RR++P +  +           + RS         R+ +N+          
Sbjct: 763 TGYVETLFNRRRELPDINSRNF---------NIRSFA------ERTAINSP--------- 798

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNAS 645
                    +Q  + DIL   M+N  KA         ++L VHDEIV E P+ + E   +
Sbjct: 799 ---------IQGSAADILKIAMINLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEAIKA 849

Query: 646 MLYHLMTSNPSWAKGLPLKAE 666
           ++   M      A  +PL A+
Sbjct: 850 LVKKTMEGAVDLA--VPLLAD 868


>gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
 gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
 gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 867

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 101/676 (14%), Positives = 215/676 (31%), Gaps = 165/676 (24%)

Query: 21  ICKYAEDVCVILFAFGFDDHP--VELWD-----CVHDPVMP---QVLKEALENTDVTIVA 70
           +  +  D  +   +F   D    VE+ D      +++  +      LK+ L N     + 
Sbjct: 316 LYPFIYDGKIKAVSFACGDGSFFVEIDDYDNFKLLNNDKLTLIGHDLKDFLVNISYCGIE 375

Query: 71  HNSY-FERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGK 127
            N    +  ++    N       +  + VL +     L +    VG+     S    + K
Sbjct: 376 LNCKILDTAIMTYLLN--PSESNYDISRVLKKYLKEDLQNIDDIVGKGRNKKSYDDIDKK 433

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
            L+   C   +       N    ++    F            E+   L+ +   E  L  
Sbjct: 434 LLVDYMCSAAS-------NLSKLKDKLMSF--------IKEMEMEDLLKNV---EIPLIE 475

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           + +++   G+ +D  +  ++++ +D +  K+ +++     G   +    ++L  +LF + 
Sbjct: 476 VLKSMEVYGFTLDKDVLRSISKEIDEKTDKIVKDIYD-AAGYEFNINSTKQLSEFLFDKL 534

Query: 248 GLHLEDLTETTCQRVLSSNKKLTP---QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            L     T+T     +    +L P      ++   R      +             DG +
Sbjct: 535 NLPAIKKTKTGYSTDMEVLAELIPYNDIVGEIIEYRQLMKLKSTY----------IDGFI 584

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
               +                       +R H    Q +       +++P+   I     
Sbjct: 585 PIMDE----------------------NNRVHSTFKQTVAATGRISSTEPNLQNIPVREE 622

Query: 361 -SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   ++S E   ++ AD + IE RVLA ++ ++  +++F   ED+++ T +  F 
Sbjct: 623 FGRRIRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFK 682

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V+  +VT + R   K +   + Y         ++    ++       +            
Sbjct: 683 VSKEEVTSEMRRRAKAVNFGIVYGISDY---GLSKDLKISRKEAKEYID----------- 728

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KA 537
                                                R   + N +    +   ENG   
Sbjct: 729 ---------------------------------NYFDRYKGVKNYIDSIVKFAKENGYVT 755

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
            I  +RR +P +              + ++   R  G  R  +NT               
Sbjct: 756 TILNRRRYIPEI--------------NSKNFNQRSFGE-RMAMNTP-------------- 786

Query: 598 TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHL 650
               +Q  + DI+   M+              ++L VHDE++ +T PD  E    +L  +
Sbjct: 787 ----IQGSAADIIKMSMVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKELLKSI 842

Query: 651 MTSNPSWAKGLPLKAE 666
           M +       +PL  +
Sbjct: 843 MENIIK--LKVPLVVD 856


>gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 883

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 103/628 (16%), Positives = 202/628 (32%), Gaps = 133/628 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110
           + +K  LE++ V     ++      L       I +      ++L       +     + 
Sbjct: 362 KQVKAILESSTVQKNVFDAKRTYVGLYRS---SITLQNVDFDMLLVSYLLNTTNNSNDVG 418

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            V +    ++ K +E  E+  +  K +    + +    +H        +    D+    +
Sbjct: 419 TVAKLHGFANIKTDE--EVYGKGAKKKIDPEVPE--FFDHIVHKAKAIDQLHNDMFKALD 474

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
              +       E ++ ++   +   G  V+      +         +++Q +     G  
Sbjct: 475 EHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEA-GEE 533

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L   LF +  L +   T+T     +   +KL P A  V              
Sbjct: 534 FNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIV-------------- 579

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                         +  L +   S+                 S+ H    Q +T      
Sbjct: 580 --------------QNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLS 625

Query: 351 TSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           + DP+   I         +R   I S E  ++  +D + IE RVLA + G++   +AF  
Sbjct: 626 SVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685

Query: 405 GEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           GED++ TT  R F +A    VT + R   K +   + Y         +A+ TG++     
Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDY---GLANNTGISRKQAH 742

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             ++       + +     +   E+  E A    ++ T                      
Sbjct: 743 QFIQ------RYFEEYPGVKKYTEDIVEFAKNHGYVET---------------------- 774

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                          IA +RR +P ++ +           + RS         R+ +NT 
Sbjct: 775 ---------------IAHRRRYLPDIHSRNF---------NLRSFA------ERTAMNTP 804

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDT 639
                             +Q  + DI+   M+N  +A       ++L VHDE++ E P+ 
Sbjct: 805 ------------------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPND 846

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           +      L   +M S       +PLK E
Sbjct: 847 EMETVEKLIPKVMDSAI--RLNIPLKVE 872


>gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
 gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
          Length = 885

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 104/639 (16%), Positives = 202/639 (31%), Gaps = 155/639 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           Q L   LE+  +     +    RT++   + L I  H     ++LA              
Sbjct: 364 QPLLSLLEDQAIAKNVFDLK--RTMV-GLYRLGIKSHNMNYDMLLASYLVNNEN------ 414

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +S  + E  +L   +      +      K    E    F       + +       
Sbjct: 415 ----NSNDLGEICQLYNYYDLQPDIDIYGKGKKAAIPEETVFFNHLAGKVLAIEVLKPTL 470

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           L+ L+  EQ+  Y         +   +   G   D +    L        T+L+ ++  L
Sbjct: 471 LKKLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFAQRLTELEADIY-L 529

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L   LF + GL     T+T       VL   K+ +P   +V + R  
Sbjct: 530 EAGERFNINSPKQLGQILFEKLGLPPIKKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQI 589

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +   +  L++ +  DG                               R H    Q 
Sbjct: 590 AKIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYQQT 617

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395
           +T      + DP+   I         +R   + S  +G      D + +E RVLA ++G+
Sbjct: 618 LTATGRLSSVDPNLQNIPVRLEEGKKIRKAFVPSNSDGYIF-SCDYSQVELRVLAHVSGD 676

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +AF+TG D++  T  + F++  P +VT + R   K +   + Y         ++  
Sbjct: 677 ENMQEAFKTGYDIHAHTAMKIFHLDSPNEVTPNMRRHAKAVNFGIVYGISDY---GLSKN 733

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +        + +     +   +     A E+ ++ T             
Sbjct: 734 LGISRKQAKEFIDN------YFEQYPKIKDYMDKEINFARENGYVET------------- 774

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                   I  +RR +P ++ K           + RS       
Sbjct: 775 ------------------------IMHRRRYLPDIHAKNF---------NVRSFA----- 796

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
             R+ +N+                   +Q  + DI+   M+N  K          +++ V
Sbjct: 797 -ERTAINSP------------------IQGGAADIIKIAMINMQKKLDELHLKTKMLIQV 837

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           HDE++ + P  +      +   +M +       +PL A+
Sbjct: 838 HDELIFDVPADELETIKKVVPEVMQNAVQ--LDVPLVAD 874


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 96/663 (14%), Positives = 210/663 (31%), Gaps = 162/663 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60
           +D E+    D    G+    ++  ++ F+F   ++        H        +   L+ A
Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQI--SLQSA 368

Query: 61  LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  +V      + HN  ++  +++  F L++P  ++  T++LA        +     AL
Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+              + +           +Y   D  +T   +    
Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474

Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LE PL       E +   +   + + G  +D      L +  + E   L +E+ +L  
Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL++     P   ++ + R   +
Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYR-ELA 592

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                             + SR +    Q  T
Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC +A +G   +  D + IE R+LA  + ++  L
Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++  T    F     +   + R++ K +   L Y  G   ++ ++    +  
Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +                                              K    +     + 
Sbjct: 737 HLA--------------------------------------------KSYIEKYFENFTS 752

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +         +  +NG                        +   SGR          + Y
Sbjct: 753 IKKYFETVKNKAKQNG-----------------------FITTLSGR----------KRY 779

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + D++   M+   K   +   ++L +HDE++ E 
Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839

Query: 637 PDT 639
            D 
Sbjct: 840 KDD 842


>gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 878

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 104/668 (15%), Positives = 206/668 (30%), Gaps = 153/668 (22%)

Query: 28  VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++        +  F + +    ++   +  ++   L +A     +        F+R+ 
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSK 378

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           VL +   +D+P         LA+          +    +L +  + +  E +  + KG  
Sbjct: 379 VLLSHLGVDLPAP--AFDSRLAKYLLSTVDDNELSTIARLYTDYVLDSDEAV--YGKGVK 434

Query: 139 HECLYDRNKPNHREAWRLF---GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
                     +H     +     E    D     +    L      EQ L  +   +   
Sbjct: 435 RAVPKKAVLLSHLARKIVVLNHSEKVMLDKLTEHQQASLLF---DMEQPLANVLAKMEIA 491

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--ED 253
           G  V  A    +         +L QE+  L  G+  +    ++L   LF +  L      
Sbjct: 492 GISVKKATLQEMEASNQAVIDELTQEIYDLA-GMEFNINSPKQLGELLFDKMQLPTSYTK 550

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            T+T     +   ++L P +  V                               L++   
Sbjct: 551 KTKTGYSTAVDVLERLAPISPIVSK----------------------------ILEYRQI 582

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
           ++             L +  + H    Q +T      + DP+   I         +R   
Sbjct: 583 AKLQSTYIVGLQDFIL-QDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 641

Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
           +   E + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +     VT 
Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         +A+  G+        ++T                  
Sbjct: 702 NDRRNAKAVNFGIVYGISDY---GLANNLGIPRKVAKQYIETYF---------------- 742

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRD 545
                                        R   + N + +      + G    +  +RR+
Sbjct: 743 ----------------------------ERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +P +              + R+   R     R+ +N+                   +Q  
Sbjct: 775 LPDI--------------NSRNFNIRQF-AERTAINSP------------------IQGS 801

Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658
           + DIL   M+N  KA  D      ++L VHDEI+ + P  + E   +++   M S     
Sbjct: 802 AADILKIAMINLDKALVDGQFKTKMLLQVHDEIILQVPKNELEAVKTLVKETMESAID-- 859

Query: 659 KGLPLKAE 666
             +PL A+
Sbjct: 860 LSVPLIAD 867


>gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 883

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 103/628 (16%), Positives = 202/628 (32%), Gaps = 133/628 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110
           + +K  LE++ V     ++      L       I +      ++L       +     + 
Sbjct: 362 KQVKAVLESSTVQKNVFDAKRTYVGLYRS---SITLQNVDFDMLLVSYLLNTTNNSNDVG 418

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            V +    ++ K +E  E+  +  K +    + +    +H        +    D+    +
Sbjct: 419 TVAKLHGFANIKTDE--EVYGKGAKKKIDPEVPE--FFDHIVHKAKAIDQLHNDMFKALD 474

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
              +       E ++ ++   +   G  V+      +         +++Q +     G  
Sbjct: 475 EHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEA-GEE 533

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L   LF +  L +   T+T     +   +KL P A  V              
Sbjct: 534 FNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIV-------------- 579

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                         +  L +   S+                 S+ H    Q +T      
Sbjct: 580 --------------QNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLS 625

Query: 351 TSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           + DP+   I         +R   I S E  ++  +D + IE RVLA + G++   +AF  
Sbjct: 626 SVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685

Query: 405 GEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           GED++ TT  R F +A    VT + R   K +   + Y         +A+ TG++     
Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDY---GLANNTGISRKQAH 742

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             ++       + +     +   E+  E A    ++ T                      
Sbjct: 743 QFIQ------RYFEEYPGVKKYTEDIVEFAKNHGYVET---------------------- 774

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                          IA +RR +P ++ +           + RS         R+ +NT 
Sbjct: 775 ---------------IAHRRRYLPDIHSRNF---------NLRSFA------ERTAMNTP 804

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDT 639
                             +Q  + DI+   M+N  +A       ++L VHDE++ E P+ 
Sbjct: 805 ------------------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPND 846

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           +      L   +M S       +PLK E
Sbjct: 847 EMETVEKLIPKVMDSAI--RLNIPLKVE 872


>gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
 gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
          Length = 872

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 92/568 (16%), Positives = 189/568 (33%), Gaps = 82/568 (14%)

Query: 8   FETRSPIDLTK----------CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            E  S +D+ +                  +  +   AF F    V   D        + L
Sbjct: 297 VEKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTVY-IDVFQ----TEDL 351

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           KE  E  D     H    +  V  +   ++    ++I T V+A       +   +   LK
Sbjct: 352 KEIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK 409

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175
              +      E I  F KG       D+ K    +   L    C   V +  ++ ++L  
Sbjct: 410 KYLKVDVPSYEGI--FGKG------RDKKKIEEIDENILADYICSRCVYL-FDLKEKLMN 460

Query: 176 --------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                   + L   E  L  + +++   G+ +D  +   L+Q +D    ++  ++     
Sbjct: 461 FIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEA- 519

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    ++L  +LF +  L +   T+T         ++L P                
Sbjct: 520 GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPY--------------- 564

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                        +  +   +++   ++        F P      +R H    Q++T   
Sbjct: 565 -------------NDIVSDIIEYRQLTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATG 610

Query: 348 TSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +++P+   I         +R   I  S    +V AD + IE RVLA ++G++  +++
Sbjct: 611 RISSTEPNLQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIES 670

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   ED+++ T +  F V   +VT + R   K +   + Y         ++    ++   
Sbjct: 671 FMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDY---GLSRDLKISRKE 727

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +        + +     +   E     A E+ ++ T   R ++   + +SR     
Sbjct: 728 AKEYINN------YFERYKGVKEYIEKIVRFAKENGYVTTIMNR-RRYIPEINSRNFTQR 780

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLV 549
           ++  +        G A    K   V + 
Sbjct: 781 SQAERLAMNAPIQGSAADIIKMAMVKVY 808


>gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S]
 gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S]
          Length = 912

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 94/527 (17%), Positives = 162/527 (30%), Gaps = 129/527 (24%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                     +       +    L+  E  L  +   +   G  VD    H L Q     
Sbjct: 486 SRAVRDLAAALDTELADIEATGLLADMELPLLEVLANLESTGIAVDTTHLHDL-QSAFAA 544

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           R     E      G   +    ++L+  LF E  +     T+T       + + L  +  
Sbjct: 545 RVAEAAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTTDADALQSLFEKTQ 604

Query: 275 QVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             F   +   R A    + ++ L++ +  DGR+  T                        
Sbjct: 605 HPFLEHLLEHRDATRLKVTVDGLLKTVAEDGRIHTT------------------------ 640

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIE 385
                   +Q +       +++P+   I         +R   +  EG   L+ AD + IE
Sbjct: 641 -------FNQTVAATGRLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIE 693

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G+   ++AF TGEDL+    +R+F V   +VT + R   K M   L Y   A
Sbjct: 694 MRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSA 753

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +A+   ++                                               
Sbjct: 754 F---GLAAQLKISTEEA------------------------------------------- 767

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
            ++      +R   + + LH+  EQ  + G       RR                 LP  
Sbjct: 768 -RQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRY---------------LP-- 809

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
                         LN+  RQ  RE      L   I Q  + DI+   M++  +A     
Sbjct: 810 -------------DLNSDNRQ-RREVAERAALNAPI-QGTAADIIKVAMIDVQRALREAG 854

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
               ++L VHDE+V E    +      L    M +       +PL+ 
Sbjct: 855 LASRMLLQVHDELVLEVAAGERERVEQLVREKMAAAID--LSVPLEV 899


>gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 104/648 (16%), Positives = 189/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D     H++      +
Sbjct: 337 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 393

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 394 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 445

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 446 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 505

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 506 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 564

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 565 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 618

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 619 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 653

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 654 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 713

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 714 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 741

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 742 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 785

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 786 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 814

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 815 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 862


>gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 104/648 (16%), Positives = 189/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D     H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss]
 gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14]
 gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg]
          Length = 866

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 99/580 (17%), Positives = 185/580 (31%), Gaps = 71/580 (12%)

Query: 28  VCVILFAFGF-DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             + L          V   +   D  +  +LK    +       + +  +   LK    +
Sbjct: 324 PSLRLHGVALSGGDEVFYIEISGDQEI-ALLKAFFADATTKFFGYRTKRDNHALKNH-GI 381

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK-ELIARFCKGETHECLYDR 145
           D+ +      LVLA+       L   G  +   +  +E G  +  A F K      L  +
Sbjct: 382 DVHVT---ADLVLAQH------LVNGGAKISFQTLLVESGHIQEAAFFAKEWGASSLPVQ 432

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCV 199
           N P +   +  FG +     ++   +F++LE         + EQ L  +   +   G  +
Sbjct: 433 NLPQNPAQY--FGIFVSRLPSIKNYLFEKLEEKGLKSIFKNVEQPLEEILFAMECAGMPL 490

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D      L++ +  E     QE+  L  G   + +  ++L   L+   G+   D  ++T 
Sbjct: 491 DSEGLLVLDRDLSKELETYTQEIYDLA-GCEFNIKSPKQLSDVLYHRLGIKPVDKAKSTK 549

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL + +       ++                                 F    +    
Sbjct: 550 AEVLEALEGSHEIISKILA-------------------------------FRATEKMLST 578

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-ASEG 373
                P Q      R H   +Q+ T        DP+   I         +R       E 
Sbjct: 579 YVRALPRQIDLGTHRVHPTFNQVGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKEN 638

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
              + AD + +E R LA ++ ++   +AF++GED++  T ++ FNV   QVT+ QR   K
Sbjct: 639 DYFLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAK 698

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   L Y   A     ++    +++N    L+    A   +  A  F     E   +  
Sbjct: 699 AVNFGLAYGQQAY---GLSKNLKISVNEAQGLIDAYFAR--YPQASEFITHTIEQASKEQ 753

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                +G   ER+   W +           L      T   G A    K   + +     
Sbjct: 754 KVTTMLGR--ERILSDW-ESSPGARAASGRL---AVNTRIQGSAAELIKLAMLNISRELV 807

Query: 554 DKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
            +     L+L     L++         +    ++      
Sbjct: 808 SRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAM 847


>gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
 gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
          Length = 898

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 101/648 (15%), Positives = 193/648 (29%), Gaps = 132/648 (20%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
            + F   P  +                L + +V  + H+       + A       +   
Sbjct: 354 GYVFGGEPALI-----SEEDSAAFSALLSDPNVGKIGHSMK---VQIHAWLGEGYTLAGI 405

Query: 94  ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNH 150
           +    +      P            +  +  +  G ++ +     GE  + L  R    H
Sbjct: 406 VGDTEIDAYLLHPDQRTYDFTDLVQRYLAIDLGGGAQDTLGIGLDGEIVDDLAARAVATH 465

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                            T E    L  +   E  +  +   +  RG  VD      L+  
Sbjct: 466 D------LRDAFARALETEEQSDALREM---ELRVCDVLARMEQRGIAVDADQLARLHAD 516

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
            D    +   +          +    ++L+  LF + GL     T++       + ++L 
Sbjct: 517 FDARVNQAATQAWEAIGDSSVNLSSPKQLQAVLFDQLGLPKTKKTKSGYTTNADALEQLL 576

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
            +     +++  A ++ +  L    +A+    +LR +++        R  G         
Sbjct: 577 VKISMREDDQALAGQNFLTGLLAHRDAI----KLRQSVE-----GLQRSLGDD------- 620

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKK-LVVADLAGI 384
              R      Q +       ++DP+   I         +R   +  +G   L+ AD + I
Sbjct: 621 --QRIRTTYQQTVAATGRLSSTDPNLQNIHARTEEGQKIREVFVPGDGYDYLMTADYSQI 678

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G+   + AF  G DL+    +R F VA ++VT  QR+  K M   L Y   
Sbjct: 679 EMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAESEVTPAQRSKIKAMSYGLVYGLS 738

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A     +++   + +    +L                                       
Sbjct: 739 AF---GLSAQLKIPVPEAQNL--------------------------------------- 756

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                     SR   +   L     Q  ++G       RR                 LP 
Sbjct: 757 -----MDGYFSRFGRVKEYLDGLVAQARKDGFTQTLLGRRRY---------------LPE 796

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619
                            ++T +  RE      L   I Q  + DI+   M+N  +     
Sbjct: 797 L----------------SSTNRQVRESAERMALNAPI-QGSAADIIKIAMLNVERELAAA 839

Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
                ++L VHDE+V E   ++      +    M +  +W   +PL  
Sbjct: 840 QLSSRVLLQVHDELVLEVAASEAEQVEAIVREQMGN--AWELSVPLSV 885


>gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus]
          Length = 954

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 83/550 (15%), Positives = 164/550 (29%), Gaps = 141/550 (25%)

Query: 142 LYDRNKPNHREAWRLFGEYCK---------GDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
              R  P+                       D  + R    RL  L+  E  L  +   +
Sbjct: 510 GAKRTVPDEPTLAEQLVRKAAAIWALEEPLMD-ELRRNEQDRL--LTELEHALAGILANM 566

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD      +   +  +   +++ +  L  G   +    ++L T LF +  L + 
Sbjct: 567 EFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA-GQEFNINSPKQLGTVLFDKLQLPVL 625

Query: 253 DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+T       VL            + + R    +     +  L++ ++          
Sbjct: 626 KKTKTGYSTSADVLEKLAPHHEIVEHILHYRQL-GKLQSTYIEGLLKVVH---------- 674

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364
                               P   + H   +Q +T      + +P+   I         +
Sbjct: 675 --------------------PVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKI 714

Query: 365 RSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R   + SE    +  AD + IE RVLA +A +   ++AF    D++  T    F+V+   
Sbjct: 715 RQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSEED 774

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y         +A    +     A  +      E +  +    +
Sbjct: 775 VTANMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEFI------ERYFASFPGVK 825

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              +N  + A +  ++ T                                     +  +R
Sbjct: 826 QYMDNIVQEAKQKGYVTT-------------------------------------LLHRR 848

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R +P +                R+   R     R+ +NT                   +Q
Sbjct: 849 RYLPDITS--------------RNFNVRTF-AERTAMNTP------------------IQ 875

Query: 604 AVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656
             + DI+ + M++        +    ++L  HDE++ E P  +      L   +M    +
Sbjct: 876 GSAADIIKKAMIDLSVSVREERLQARLLLQGHDELILEAPKEEIGRLCRLVPEVMEQAVT 935

Query: 657 WAKGLPLKAE 666
               +PLK +
Sbjct: 936 --LRVPLKVD 943


>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 921

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 93/618 (15%), Positives = 187/618 (30%), Gaps = 149/618 (24%)

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120
           E+  +  +  N  ++  VL       I +  +  T++L+               +L    
Sbjct: 403 EDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFD 459

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
            +    K +        T       + P           Y   D  +T  ++  L+P   
Sbjct: 460 HQPISFKSVCGTGKSAITFN-----HVPIPA-----ATRYAAEDADITFRLWALLKPRLS 509

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                      ++ L  +   +   G  VD    H L+     + ++L++E+  L  G  
Sbjct: 510 SDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYVLA-GCR 568

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
                 ++L   LF   GL     +++      ++  ++L  +   + +           
Sbjct: 569 FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGEAIASK---------- 618

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                             L++   S+           +  P   R H     +       
Sbjct: 619 -----------------ILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRL 661

Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I     I   +R+  IA +G  L+ AD + IE R+ A +A E+  L+AF  
Sbjct: 662 SSTDPNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFRE 721

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            ED++  T  + F      V ++ RA  K +                A   G++    A 
Sbjct: 722 KEDIHALTAKQLFG----HVDRESRARAKTIN--------------FAILYGISAWGLAA 763

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            ++ +        A+       E  P                             + + +
Sbjct: 764 RLEIDR-----FSAQEMIDRYFERFP----------------------------AIRHYI 790

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +  +    +G                        +  P GR      +          +
Sbjct: 791 DRTLDFVRLHG-----------------------YVETPFGRKTHLPAIK---------S 818

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEIVCETP 637
           R++T       +     +Q +S DI+   M+    A          ++L VHDE++ E P
Sbjct: 819 RKVTERQAAERQAINAPIQGMSADIIKRAMVRMEPALAKAGLSSVKMLLQVHDELIFEVP 878

Query: 638 DTDEFNAS-MLYHLMTSN 654
           + D   A  ++  +M   
Sbjct: 879 EEDIEKAKPVIRQVMMEA 896


>gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 868

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 84/520 (16%), Positives = 170/520 (32%), Gaps = 127/520 (24%)

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            K  +    +  ++ E     E+ L  +   +   G  VD     +  + +      L +
Sbjct: 451 AKNRIFQELKDTEQWELYRDVEEPLVPVLYRMEKAGILVDKEALLSYGEELKKNIAMLQE 510

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277
           E+ ++  G   +    ++L   LF +  L     T+T       VL   ++  P   ++ 
Sbjct: 511 EIYAMA-GEEFNINSPQQLGGILFEKMQLPGGKKTKTGYSTAVDVLEKLQEDYPIVGKIL 569

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R   S+        L   +  D R+ G+ Q                            
Sbjct: 570 EYRT-YSKLNSTYAEGLSNYVGEDQRIHGSFQ---------------------------- 600

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
              Q++T      +++P+   I          RS  I  EG   + AD + +E R+LA +
Sbjct: 601 ---QMVTATGRLSSTEPNLQNIPIRTEMGRVFRSVFIPKEGSVFLDADYSQVELRLLASL 657

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  ++A+    D++  T +  F+V   +VT + R   K +   + Y   A    +  
Sbjct: 658 SKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAVNFGIVYGISAFGLSE-- 715

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              GL+++               ++A+ +      ++P+       +    +      R+
Sbjct: 716 ---GLSISR--------------QEAKEYIERYFTSYPK-------VKEYLDGEVAFARE 751

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            HS V  L+                    +RR +P ++     N +              
Sbjct: 752 -HSFVKTLF-------------------GRRRPLPEIHA---SNFMRRSF---------- 778

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626
             + R  +N                    +Q  + DI+ + M+              IVL
Sbjct: 779 --SERVAMNAP------------------IQGTAADIIKKAMVIVDQKLSEKNCQSRIVL 818

Query: 627 TVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            +HDE++ E   +  E    +L   M    S    L ++A
Sbjct: 819 QIHDELLLEVVKEELETVKDILVSAMEHVVSLPVPLIVEA 858


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 104/547 (19%), Positives = 170/547 (31%), Gaps = 139/547 (25%)

Query: 146 NKPNHREAWRLFG--EYCKGDVTVTREIFKRLEP---------LSSKEQELWYLDQTIND 194
           N P   E +      E       +T  + + L P             E+ L  + + +  
Sbjct: 463 NMPIVAERYLRTTWPEDAATRAAITYRLLQDLPPHLDEARRKLYEEVEKPLSAVLKRMEV 522

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
           RG  +D      L++ +      L+ E+  L  G   + R  ++L+T L+ E GL     
Sbjct: 523 RGVRLDSDYLRGLSEALAGRIATLEAEIHRLA-GREFAIRSRDQLETVLYDELGLASGKK 581

Query: 255 TETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
           T+ T +R      L   +   P    +   R                      +LRGT  
Sbjct: 582 TKLTGKRSTAVSALEPLRNEHPIIPALLEYRELE-------------------KLRGT-- 620

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCV 364
                          P    PR  R H    Q         + +P+   I     +   +
Sbjct: 621 ----------YLDPLPNLVNPRTGRLHTTFSQTTAATGRLSSLNPNLQNIPIRSELGREI 670

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   IA EG  L+ AD + IE R+LA +A +    +AF  G D++  T A+   +A   +
Sbjct: 671 RKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREGADIHRRTAAQVLGLAEDAI 730

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T +QR   K +                    G++ +       +N     + +A  F   
Sbjct: 731 TPNQRRAAKTVN--------------FGVLYGMSAHRL-----SNELGIPYAEAAQFIDV 771

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
               +P        I    ER     R+ H  V  L+                    +RR
Sbjct: 772 YFNTYP-------GIRRYIERTLDFGRE-HGYVETLY-------------------GRRR 804

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            VP +  +                            N   R+      Y        +Q 
Sbjct: 805 YVPELKSQ----------------------------NRVIREAGERLAY-----NMPIQG 831

Query: 605 VSRDILAEGMMNAT----KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            + DI+   M+         G  ++L VHDE++ E P T     + L   +M        
Sbjct: 832 TAADIIKIAMVRLDQELDALGARLLLQVHDELLIEAPATQADRVAALTREVMEQAAH--L 889

Query: 660 GLPLKAE 666
            +PL  E
Sbjct: 890 SVPLAVE 896


>gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2]
          Length = 892

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 106/648 (16%), Positives = 191/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D   V H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E +E         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L    D   T+  +       G   +    ++L+  LF +  +     T+
Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R  V
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGV 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/500 (15%), Positives = 158/500 (31%), Gaps = 129/500 (25%)

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +   G  VD A    +   +  +  K+++++  L  G   +    ++L   
Sbjct: 480 MPLTLVLGEMEALGIKVDKARLEEMGTDLGEKLEKIEEKIFDLA-GEKFNINSPKQLGVI 538

Query: 243 LFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           LF + GL     T+T       VL    +      Q+ + R    +     +  L++ ++
Sbjct: 539 LFEKLGLPPVKKTKTGYSTSADVLEKLAEKHEVIQQILHYRQL-GKLKSTYIEGLLKVIH 597

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D                               ++ H   +Q +T      + DP+   I
Sbjct: 598 ED------------------------------SNKIHTRFNQALTQTGRLSSIDPNLQNI 627

Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   I S E   +  AD + IE RVLA +A ++  ++AF+   D++  T 
Sbjct: 628 PVRLEEGRKIREAFIPSHEDWVIFAADYSQIELRVLAHIANDEKLIEAFKEDADIHTKTA 687

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F+V+  +VT + R   K +   + Y        +   + G+        +       
Sbjct: 688 MDVFHVSEDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKDAKTFID------ 738

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            + ++    +   E+    A +  ++ T                                
Sbjct: 739 RYLESFPGVKEYMEDSVLDAKDKGYVTTLL------------------------------ 768

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +              + RS         R+ +NT           
Sbjct: 769 -------HRRRYLPEITSSNF---------NLRSFA------ERTAMNTP---------- 796

Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + DI+ + M++             ++L VHDE+V E P  +      +
Sbjct: 797 --------IQGSAADIIKKAMIDMANRLEEENMKSKVLLQVHDELVFEAPKDEIEKLKKI 848

Query: 648 Y-HLMTSNPSWAKGLPLKAE 666
              +M         +PLK +
Sbjct: 849 VPEVMEQAVE--LKVPLKVD 866


>gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 101/625 (16%), Positives = 184/625 (29%), Gaps = 156/625 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            L+  +EN  +     N   +  + K    L + +       +LA        L      
Sbjct: 372 ELRAVIENPAIIKNVFNVKAQLVMFKR---LGLALQGVDFDFLLAAYL-----LDTTAN- 422

Query: 116 LKLSSQKMEEGKELIARFCKG-ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREI-- 171
                    E   L  RF    +  E +Y +       E       +         ++  
Sbjct: 423 -------DNELSTLAQRFDVYVQPDEEIYGKGAKFAVPEDVDRVLMHLGQKADALMQLET 475

Query: 172 --------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                    +++   +  E  L ++   +  RG  ++ A            R +  ++  
Sbjct: 476 PTLAALTDHEQMHLYTDIELPLAHVLADMEYRGIAINQARLAE-IGTDLTGRIQAIEDAI 534

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280
            L  G   +    ++L   LF + GL +   T+T       VL       P    V   R
Sbjct: 535 YLEAGEKFNINSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEKLAHQAPIVDYVLQYR 594

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A                               +               + S+ H    
Sbjct: 595 QLA-------------------------------KLKSTYVDGLLAVVNQKDSKIHTRFL 623

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
           Q +T      + DP+   I         +R+  + S    ++  AD + IE RVLA M G
Sbjct: 624 QTLTQTGRLSSVDPNLQNIPMRSDEGRQIRTAFVPSQPDWQIFGADYSQIELRVLAHMTG 683

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++   +AF  GED++  T    F +     V   QR   K +   + Y         +A+
Sbjct: 684 DKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIVYGISDF---GLAN 740

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++       + T      +++      WM EN    A    ++ T            
Sbjct: 741 NLGISRAQAKQFIDT-----YFKEFPKVHEWM-ENIKAVAHAQGYVET------------ 782

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                                    IA++RR +P ++ K           + RS      
Sbjct: 783 -------------------------IAKRRRYLPDIHAKNF---------NLRSFA---- 804

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLT 627
              R+ +N+                   +Q  + DI+   M+    A         ++L 
Sbjct: 805 --ERTAMNSP------------------IQGSAADIIKIAMIKVADALAENNMQARMLLQ 844

Query: 628 VHDEIVCETPDTDEFNASMLY-HLM 651
           VHDE++ E P ++    + L   +M
Sbjct: 845 VHDELIFEAPTSEIPALTALVTKVM 869


>gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 870

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 74/500 (14%), Positives = 155/500 (31%), Gaps = 129/500 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L +    +   G  V+        + +  +  +L++E+ +   G   +    ++L  
Sbjct: 474 EMPLLFTLFAMEQAGVRVEAEALRFYGEQLGTKIVELEKEIYAQA-GEAFNINSPKQLGV 532

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L     T+T          KL P+     ++   R      +    + L   +
Sbjct: 533 ILFEKLKLPHGKKTKTGYSTAADVLDKLAPEYPVVEKILEYRQLTKLKSTYA-DGLANYI 591

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            +DGR+                               H + +Q IT      +++P+   
Sbjct: 592 CADGRI-------------------------------HGKFNQTITATGRISSTEPNLQN 620

Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I     +   +R   I  EG   V AD + IE R+LA  +G+Q  + A+   +D++  T 
Sbjct: 621 IPVRMELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITA 680

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           ++ F+    +VT+ QR   K +   + Y   +    +      +     +  +       
Sbjct: 681 SQVFHTPFDEVTELQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEASEYI------- 730

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                               + + +  + +  ++     ++   
Sbjct: 731 ----------------------------------DRYFETYPGIKKFLDDTVAHAKEM-- 754

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                +  +RR VP +      N +                  R  +N            
Sbjct: 755 GYVVTLFGRRRPVPEL---ASSNFMQRSF------------GERVAMNAP---------- 789

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASM 646
                   +Q  + D++   M+         K    +VL VHDE++ E  + + E    +
Sbjct: 790 --------IQGTAADVMKIAMIGVHRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKI 841

Query: 647 LYHLMTSNPSWAKGLPLKAE 666
           L   M         +PL+ +
Sbjct: 842 LKEQMEQAAQ--LDVPLEVD 859


>gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7]
 gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11]
          Length = 237

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 13/237 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L A+
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L + +   K + GK LI RF K         R     H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           E++K++     S  E  + +LDQ INDRG+ VDVALA +  + V   + +L +E + 
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQR 237


>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
 gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
          Length = 908

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 116/645 (17%), Positives = 201/645 (31%), Gaps = 150/645 (23%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLP 106
           V         +E LE+  V    H    +   L     N  I +H     + L      P
Sbjct: 377 VRPEAFTAAFREVLEDAAVKKGGH----DLKALSLVLANDGITLHGAHDDVELLSYLLNP 432

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           S  +     + LS +++    EL       E      DR   +H     +   +      
Sbjct: 433 SRREH--ALVDLSRERLN--TELPPLPPAAEGKRGKKDRALADHTVE-EVATGFAIR-AE 486

Query: 167 VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
             R +   L                E  L  L   +  RG  +D A     +  VD    
Sbjct: 487 AARRLAPELWKELEAAKLAALARDMELPLLPLLAQMERRGVLLDTAELSRTSVKVDAAVE 546

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQA 273
              +E+     G   +     +L   LF E  L +    +T     Q VL    +  P  
Sbjct: 547 AQVKEVYRHA-GREFNIGSNPQLVEVLFTELKLPIIKRGKTGPSADQEVLEKLSEEHPLP 605

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R   S+     L+TL   + +DG                               
Sbjct: 606 GAIIEYR-SLSKLKSTYLDTLPTLVAADG------------------------------- 633

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
           R H    Q  T      ++DP+   I     +   +R   +A+EG +LV AD + +E R+
Sbjct: 634 RIHTTYHQAATATGRLSSTDPNLQNIPVRTDLGREIRRAFVAAEGHQLVSADYSQVELRL 693

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A +   ++AF   ED++  T A  F VA  QV ++QR + K++   + Y       
Sbjct: 694 LAHIANDPVLIEAFLHDEDIHTRTAAEVFGVAKEQVDREQRRVAKMVNFGIAYGLSP--- 750

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             + +  G+  +    +++                                         
Sbjct: 751 HGLGARLGIAQDVARDIIE----------------------------------------- 769

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +  +R + +   L +  ++  + G       RR              +  L S    
Sbjct: 770 ---RYFTRYAGIRRYLEETVDRARKTGYVETLYGRRR------------YMADLNSKNRG 814

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------ 622
           V +     R+ +N                    +Q  + D++ + M+   +A        
Sbjct: 815 VAQAA--ERAAINMP------------------IQGTAADLIKKAMLAVDEALTAQKLRT 854

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
            ++L VHDE++ E PD +      L    M+S       +PLK E
Sbjct: 855 RMLLQVHDELLFEAPDAEVEQVKALAVKAMSSVAD--LKVPLKVE 897


>gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 921

 Score =  230 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 93/618 (15%), Positives = 189/618 (30%), Gaps = 149/618 (24%)

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120
           E+  +  +  N  ++  VL       I +  +  T++L+               +L    
Sbjct: 403 EDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFD 459

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
            +    K +        T       + P           Y   D  +T  ++  L+P   
Sbjct: 460 HQPISFKSVCGTGKSAITFN-----HVPIPA-----ATRYAAEDADITFRLWALLKPRLS 509

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                      ++ L  +   +   G  VD    H L+     + ++L++E+ +L  G  
Sbjct: 510 SDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYALA-GCR 568

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
                 ++L   LF   GL     +++      ++  ++L  +   + +           
Sbjct: 569 FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGEVIASK---------- 618

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                             L++   S+           +  P   R H     +       
Sbjct: 619 -----------------ILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVGAQTGRL 661

Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            ++DP+   I     I   +R+  IA +G  L+ AD + IE R+ A +A E+  L+AF+ 
Sbjct: 662 SSTDPNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQE 721

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            ED++  T  + F      V ++ RA  K +                A   G++    A 
Sbjct: 722 KEDIHALTAKQLFG----HVDRESRARAKTIN--------------FAILYGISAWGLAA 763

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            ++ +        A+       E  P                             + + +
Sbjct: 764 RLEIDR-----FSAQEMIDRYFERFP----------------------------AIRHYI 790

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +  +    +G                        +  P GR      +          +
Sbjct: 791 DRTLDFVRLHG-----------------------YVETPFGRKTHLPAIK---------S 818

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEIVCETP 637
           R++T       +     +Q +S DI+   M+    A          ++L VHDE++ E P
Sbjct: 819 RKVTERQAAERQAINAPIQGMSADIIKRAMVRMEPALAKVGLSSVKMLLQVHDELIFEVP 878

Query: 638 DTDEFNAS-MLYHLMTSN 654
           + D   A  ++  +M   
Sbjct: 879 EEDIEKAKPVIRQVMMEA 896


>gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 872

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 92/568 (16%), Positives = 189/568 (33%), Gaps = 82/568 (14%)

Query: 8   FETRSPIDLTK----------CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            E  S +D+ +                  +  +   AF F    V   D        + L
Sbjct: 297 VEKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTVY-IDVFQ----TEDL 351

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           KE  E  D     H    +  V  +   ++    ++I T V+A       +   +   LK
Sbjct: 352 KEIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK 409

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175
              +      E I  F KG       D+ K    +   L    C   V +  ++ ++L  
Sbjct: 410 KYLKVDVPSYEGI--FGKG------RDKKKIEEIDENILADYICSRCVYL-FDLKEKLMN 460

Query: 176 --------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                   + L   E  L  + +++   G+ +D  +   L+Q +D    ++  ++     
Sbjct: 461 FIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEA- 519

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    ++L  +LF +  L +   T+T         ++L P                
Sbjct: 520 GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPY--------------- 564

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                        +  +   +++   ++        F P      +R H    Q++T   
Sbjct: 565 -------------NDIVSDIIEYRQLTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATG 610

Query: 348 TSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +++P+   I         +R   I  S    +V AD + IE RVLA ++G++  +++
Sbjct: 611 RISSTEPNLQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIES 670

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   ED+++ T +  F V   +VT + R   K +   + Y         ++    ++   
Sbjct: 671 FMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDY---GLSRDLKISRKE 727

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +        + +     +   E     A E+ ++ T   R ++   + +SR     
Sbjct: 728 AKEYINN------YFERYKGVKDYIEKIVRFAKENGYVTTIMNR-RRYIPEINSRNFTQR 780

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLV 549
           ++  +        G A    K   V + 
Sbjct: 781 SQAERLAMNAPIQGSAADIIKMAMVKVY 808


>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
 gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
          Length = 878

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 95/633 (15%), Positives = 196/633 (30%), Gaps = 162/633 (25%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK   EN  +  V H+S     VLK     +I          +A     PS    +  
Sbjct: 376 EILKNLFENEKIKKVCHDSKKVYVVLKKH---NIAAKNIAFDTKIAAYLLQPSKSDYM-- 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                   +++  E +      +      +              E  + D+  +      
Sbjct: 431 --------LKDLIEEMLLLSLKDDDNIKINETYYIKD-----VYEKLEKDIKKS-----N 472

Query: 175 LEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +E L  + E  L  +  ++   G+ VD      + +    E   L++E+  L      + 
Sbjct: 473 MEELLYTVELPLIEVLASMECEGFRVDENRLTEIGEKFKKEIETLEKEIHELAD-EEFNI 531

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           +  ++L   LF +  L +   T+T       VL   K   P   ++   R      +   
Sbjct: 532 KSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIIEKIIEYRQITKLDSTY- 590

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L   ++ D ++                               H   +Q +T      
Sbjct: 591 VEGLKNVIDEDAKI-------------------------------HSSFNQTVTTTGRLS 619

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +++P+   I         +R   + +  +  +  AD + IE R+L+ +A ++  + AF+ 
Sbjct: 620 STEPNLQNIPIKHEMGREIRKVFVPNNDESVIFSADYSQIELRILSHIADDEKLIDAFKH 679

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +D++  T +  F V   +VT   R+  K +   + Y  GA +         ++      
Sbjct: 680 HKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLS---KDINVSRKEAKE 736

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            + T      + + + +   +       A  D F+                         
Sbjct: 737 YIDT--YFSRYPNVKKYIDEIIS----KAEVDGFV------------------------- 765

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                         I  ++R +P +                R+ + R  G  R  +NT  
Sbjct: 766 ------------TTILNRKRYIPEI--------------QSRNKIVRGFGE-RLAMNTP- 797

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC---- 634
                            +Q  + DI+   M+              ++L VHDE++     
Sbjct: 798 -----------------IQGSAADIIKLAMVEVYNELKNRNLKSTLILQVHDELILNVYK 840

Query: 635 -ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            E  +  E     + ++M         +PL+A+
Sbjct: 841 DELEEVKEMVVDKMENVMKLL------VPLEAD 867


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 96/663 (14%), Positives = 212/663 (31%), Gaps = 162/663 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60
           +D E+    D    G+    ++  ++ F+F  +++        H        +   L+ A
Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQI--SLQSA 368

Query: 61  LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  +V      + HN  ++  +++  F+L++P  ++  T++LA        +     AL
Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+              + +           +Y   D  +T   +    
Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474

Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LE PL       E +   +   + + G  +D      L +  + E   L +E+ +L  
Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL++     P   ++ + R   +
Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSRKKGKTGYSTDEKVLNALLDKHPAITKILDYR-ELA 592

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                             + SR +    Q  T
Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC +A +G   +  D + IE R+LA  + ++  L
Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++  T    F     +   + R++ K +   L Y  G   ++ ++    +  
Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +                                              K    +     + 
Sbjct: 737 HLA--------------------------------------------KSYIEKYFENFTS 752

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +         +  +NG                        +   SGR          + Y
Sbjct: 753 IKKYFETVKNEAKQNG-----------------------FITTLSGR----------KRY 779

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + D++   M+   K   +   ++L +HDE++ E 
Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839

Query: 637 PDT 639
            D 
Sbjct: 840 KDD 842


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 120/722 (16%), Positives = 232/722 (32%), Gaps = 161/722 (22%)

Query: 7    DFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQVL 57
            D ET S  P D    GI             +G +   V      H          + + L
Sbjct: 386  DTETTSLEPRDAELVGIG----------CCWGKNMEDVAYIPTGHKTDKNLDKVTVLESL 435

Query: 58   KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            K  LE+++   V  NS F+R V   C  + +         +LA     P A         
Sbjct: 436  KPVLESSEYPKVFQNSKFDRLVF-RCQGIKL--TGVFFDTMLASYVLNPEA------KHS 486

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE- 176
            L    +   + +       +    +  +N+           +YC   V VT ++ ++L  
Sbjct: 487  LEEIYIRYLRNVGINLQSYQD---VVSKNQTIADLDILKVADYCGTQVWVTFQLVEKLRT 543

Query: 177  -----------------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE----- 214
                              L   EQ L  +   +  +G  +D+      +  +  +     
Sbjct: 544  ELEKADKNKSTEKSLYRLLVDVEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEEIE 603

Query: 215  ------------RTKLDQELESLTYGLVSSSRCLEK------LKTWLFLETGLHLEDL-- 254
                        +  L  E+  + +   S+ + L+K      LK ++      H ++L  
Sbjct: 604  KRAFKTVDSQVLQKYLQTEIHEIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNLEN 663

Query: 255  TETTCQRV-------LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR---- 303
             E+   +V       L+S  +L+    ++ N   + SR      +T V A+         
Sbjct: 664  IESQINQVETRDLLNLNSPSQLSELLFRILNQNHKKSRRIKTGYSTDVVALEKLQTEPEH 723

Query: 304  ---LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
               +   L      +         P        R H   +Q  T      +S+P+   I 
Sbjct: 724  HPIIDEILNHRTLYKLFSTYVEAIPRLVRSDTQRVHTNFNQTQTDTGRLSSSEPNLQNIP 783

Query: 361  -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                 S  +R   +  +   LV AD + IE R+LA ++ E   ++A++  +D++  T   
Sbjct: 784  IGTKFSRQIRQAFLPKKDWLLVAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAKL 843

Query: 416  SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
             F     +++ ++R +GK +   + Y  GA   QK+A +  + +      +      E++
Sbjct: 844  LF--EKEEISSEERRVGKTINFGVIYGMGA---QKLARSVKITVKESKQFL------EKY 892

Query: 476  EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +   +      E   + AI   ++ T   R +               EL     + +++ 
Sbjct: 893  KQQYSLVFAYLEKLKKQAIAKGYVETILGRRRYF-------------ELESKTIRDLKDK 939

Query: 536  KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
            +                                   ++       +    Q+ R      
Sbjct: 940  EP---------------------------------EEINLQELKFSQNDAQILRSAANSP 966

Query: 596  KLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD-EFNASMLYHL 650
                  +Q  S DI+   M+   K        ++L VHDE+V E P ++ E    ++   
Sbjct: 967  ------IQGSSADIIKIAMIRLNKILTNYQTKLLLQVHDELVFEVPPSELEKMQQLIKST 1020

Query: 651  MT 652
            M 
Sbjct: 1021 ME 1022


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 102/661 (15%), Positives = 207/661 (31%), Gaps = 160/661 (24%)

Query: 8   FETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL-----KE 59
            E+ S I  D    G+   A +  ++ F+F   ++        H    +P  +     K 
Sbjct: 313 LESESIIAFDTETTGLN--AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQTAKR 370

Query: 60  ALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           AL       I+ HN  ++  +++  F L  P  ++  T++LA        +     AL+L
Sbjct: 371 ALGQIYSHFIIGHNLKYDFAIIENNFKL-TPPKKYADTMILAWLYNPSLRVNMDDLALRL 429

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KR 174
              K    + ++              + +            Y   D  +T   +    K 
Sbjct: 430 FDYKTLHFESVVK-------------KGENFASVELEKACNYAAEDAYITLRFYLYFLKN 476

Query: 175 LEPLS-----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           LEP         E     + + +   G  ++      L Q  + E   L +E+ +L    
Sbjct: 477 LEPNLLKLGFESEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYTLCDD- 535

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   LF +  L     T+T     ++VL +     P   ++   R   ++ 
Sbjct: 536 KFNLNSPKQVGDVLFEKLNLPSAKKTKTGYSTDEKVLENLVDKHPVVSKILAYR-ELAKL 594

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                  L++    D                               SR +    Q  T  
Sbjct: 595 YSTYCEPLLKLALKD-----------------------------ENSRIYSSFLQTGTAT 625

Query: 347 PTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I +        +SC IA +G   +  D + IE R+LA  + ++  L+A
Sbjct: 626 GRLSSKEPNLQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEA 685

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+  ED++  T    F     +   + R++ K +   L Y  G   ++ ++    +  + 
Sbjct: 686 FKNDEDIHARTAIMIFG----ENNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEASL 738

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                        K+   +  +  + + 
Sbjct: 739 A--------------------------------------------KEYIEKYFANFTSIK 754

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           +   +   +   NG                        +   SGR          + Y +
Sbjct: 755 SYFERVKNEAKING-----------------------YISTLSGR----------KRYFD 781

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCETPD 638
               +  +   Y  +   +I+Q  + DI+   M+   K   A   ++L +HDE++ E  D
Sbjct: 782 FANAKPMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEVKD 841

Query: 639 T 639
            
Sbjct: 842 E 842


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 92/570 (16%), Positives = 181/570 (31%), Gaps = 107/570 (18%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV------------- 52
           ID ET S            ++   ++  +   +++        H                
Sbjct: 345 IDTETNSLN----------SQKADLVGISLAINENEAYYVPVGHKNKQDPNLKKQIKIKE 394

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSAL 109
           + +VLK  LE+  V  V  N  ++   LK      I +  +  T++L+ S         L
Sbjct: 395 LVKVLKPYLEDETVKKVGQNIKYD---LKIFLKYGIELKSFEDTMLLSYSLDAGVNRHNL 451

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +          + K+++       T + +   N             Y   D  VT 
Sbjct: 452 DLLAKTH--LDHDNIKFKDVVGTGKSEVTFDEVLIDN----------AYRYACEDADVTL 499

Query: 170 EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++   +    KE+           L  +   + + G  +D  +   L+     +   L+
Sbjct: 500 KLYNLFKDRIVKEKCFQIYETLEIPLVDVLARMENNGIKIDQVILKKLSNSFSADLKTLE 559

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-KLTPQAI 274
           +++  L+ G   +    ++L   L+ +  +     T+     T   VL     K      
Sbjct: 560 KKIYKLS-GEEFNIASTKQLGDILYEKLKISGTKKTKKGNFATNVNVLEDLASKGNEFPK 618

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            V   R +                               S+         P        R
Sbjct: 619 LVLEWRQK-------------------------------SKLKNTYTDSLPEYIDKNTKR 647

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389
            H       T      ++DP+   I         +RS  ++ +G  ++ AD + IE RVL
Sbjct: 648 IHTSFLLAATSTGRLASADPNLQNIPIKSKEGKLIRSAFVSEKGSSIISADYSQIEMRVL 707

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A  +   KAF+  ED++  T ++ F     ++ +D R   K +   + Y   +    
Sbjct: 708 AHVADVKELKKAFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINFGIIYGISSYGLA 767

Query: 450 KMASTTGLNLNT--FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
           K  S +        F++  K     +  ++   FCR           ++ F+ T   R K
Sbjct: 768 KQISVSNPEAEQFLFSYFKKFPEIRDYMQETLEFCR-----------KNGFVQTMFNR-K 815

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKA 537
             +   + +   L +   +A       G A
Sbjct: 816 CHFPNINDKNHTLKSFQERAAINAPIQGAA 845


>gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13]
          Length = 237

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 13/237 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L A+
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L + +   K + GK LI RF K         R     H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           E++K++     S  E  + +LDQ INDRG+ VDVALA    + V   + +L +E + 
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQR 237


>gi|332701547|ref|ZP_08421635.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
 gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
          Length = 882

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 96/517 (18%), Positives = 164/517 (31%), Gaps = 119/517 (23%)

Query: 161 CKGDVTVTR-EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
              DV   R       E L   E  L  +   +   G  +D A   +    V+ +  +L 
Sbjct: 463 ALHDVLAKRLAAANLTELLRDLEMPLVPVLVAMEQAGIAIDKAAFESFLSEVNAQIGELT 522

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275
             + ++   +  + R  ++L   LF   GL  +  T    ++T   VL   +   P    
Sbjct: 523 SRIHAVA-EMPFNIRSNQQLAQLLFDRLGLKAKGKTPGGAQSTANPVLEKLRNEHPVVAD 581

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   RM     +   L  L +  +  GR+  T                            
Sbjct: 582 ILEFRMLEKLRSTY-LEPLPKLADEQGRIHTT---------------------------- 612

Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLA 390
               +Q+ T      +S P+   I         +R+C  A  G  L  AD + IE RVLA
Sbjct: 613 ---FNQLATATGRLSSSAPNLQNIPIRGPQGTRMRACFTAGPGCLLAAADYSQIELRVLA 669

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            M+ +   L+AF  G+D++  T    F+    QV  D+R   K +   L Y  G    QK
Sbjct: 670 HMSQDPTLLEAFRHGQDIHARTAGLIFDKDAGQVAPDERRSAKTINFGLLYGMGP---QK 726

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A+  G+ L      ++            +  +   ++  + A ++  + T   R ++  
Sbjct: 727 LAAELGIALAQAKEFIERYFVG------LSKLKEFYDSIVKEAEQNGSVVTMLGR-RRLL 779

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              HSR   L  +  +    T   G A                      + L   R+   
Sbjct: 780 PDIHSRNDNLKAQAVRQAINTRIQGSAADI-------------------IKLAMIRAHAD 820

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
             +                    GG+L                            L VHD
Sbjct: 821 EKI-----------------RALGGRLI---------------------------LQVHD 836

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           E++ ETP+     A + +  +M         +PL  +
Sbjct: 837 ELLLETPEATAQEAGARMKEIMAGIVE--LSVPLVVD 871


>gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
 gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
          Length = 902

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 100/626 (15%), Positives = 180/626 (28%), Gaps = 141/626 (22%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L +     V H+S   R    A       +        LA     P   +      AL+ 
Sbjct: 384 LADPARPKVLHDSKHARL---AFAARGWSLAGVARDTELAAYLARPDQRSYDLTDLALRY 440

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYC-KGDVTVTREIFKRL 175
             +++        +     T + L D  +         R   +     D  ++R+  +  
Sbjct: 441 LHRELRVDAPETGQL----TFDGLGDDGEAEQNLMLQARATLDLADAIDAELSRDGEQSA 496

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
             ++  E  L  +   +   G   D+     L      E     Q   +   G   +   
Sbjct: 497 RLMAQVELPLSEVLAAMQRVGIAADLDYLQELEAHFAGEVKSAAQGAYA-AVGREFNLGS 555

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLN 292
            ++L+  LF E GL      +T       + + L  Q        +   R        ++
Sbjct: 556 PKQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEHLLRHRDVAKLKTTVD 615

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L+++++ DGR+  T                                 Q +       ++
Sbjct: 616 GLLKSVSEDGRIHTT-------------------------------FKQTVAATGRLSST 644

Query: 353 DPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           DP+   I         +R   +  +G + L+ AD + IE R++A ++ +   ++AF +G 
Sbjct: 645 DPNLQNIPIRTEEGRRIRRAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGH 704

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D +  T +  F V  A+VT DQR   K M   L Y   A    +     G+       L 
Sbjct: 705 DFHAATASSVFGVPVAEVTADQRRKIKAMNYGLAYGLSAFGLSQ---QLGITAEEARGL- 760

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                           +    + + L +
Sbjct: 761 -------------------------------------------MDNYFAGFGGVRDYLQE 777

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
              +   +G       RR                 LP                L +  RQ
Sbjct: 778 VVARARHDGYTSTILGRRRY---------------LP---------------DLVSDNRQ 807

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD 640
             R+      L   I Q  + DI+   M+              ++L VHDE+V E    +
Sbjct: 808 -RRDMAERMALNAPI-QGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGE 865

Query: 641 EFNASMLYH-LMTSNPSWAKGLPLKA 665
                 L    M    ++   +PL+ 
Sbjct: 866 RDTLEALVRSQMGE--AYPLSVPLEV 889


>gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12]
          Length = 894

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 156/434 (35%), Gaps = 47/434 (10%)

Query: 160 YCKGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           Y   D+       K LE +    E  L  +   +   G  +D       +  +  +   L
Sbjct: 473 YSCLDILEEDVKEKELEAVLWETELPLIPVLADMERIGIKIDRKYFEAYSLELTEKLALL 532

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           ++ +     G   +    ++L   LFL+  L     T+T     +   + L+ Q  Q+ +
Sbjct: 533 EKAIWEEA-GEEFNLNSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLEHLSSQGFQIAS 591

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           N +                           ++   ++         P        R H  
Sbjct: 592 NLL---------------------------EYRKLAKLKNTYVDPIPKMT-GEGDRIHTC 623

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
             QI T      +SDP+   I         +R   IA EG KL+  D + +E RVLA ++
Sbjct: 624 YHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIAREGWKLLSIDYSQVELRVLASLS 683

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
            ++  LKA++  +DL+  T  R F +    +V+++QR + K++  ++ Y         +A
Sbjct: 684 KDENLLKAYQEKQDLHSVTAKRIFELQEDEEVSREQRIMAKIINFSIIYGKTPF---GLA 740

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+++      +K      ++     F R +     EH   + + G      ++    
Sbjct: 741 KELGISVKDAGEYIK--RYFAQYPRVAQFERQVITFAEEHGYVETYFGR-----RRIIDG 793

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571
            HS+   + ++  +    T+  G A    K+  + +      K ++ L+L     L++  
Sbjct: 794 IHSKNKMVKSQAERMAVNTVVQGTAAEILKKVMIKIYSWLSQKTDIHLLLQVHDELIFEI 853

Query: 572 DVGNNRSYLNTTTR 585
             G  + Y     R
Sbjct: 854 QEGKLQEYEENLIR 867


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 95/663 (14%), Positives = 210/663 (31%), Gaps = 162/663 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60
           +D E+    D    G+    ++  ++ F+F   ++        H        +   L+ A
Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQI--SLQSA 368

Query: 61  LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  +V      + HN  ++  +++  F L++P  ++  T++LA        +     AL
Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+              + +           +Y   D  ++   +    
Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYISLRFYLYFL 474

Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LE PL       E +   +   + + G  +D      L +  + E   L +E+ +L  
Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL++     P   ++ + R   +
Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYR-ELA 592

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                             + SR +    Q  T
Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC +A +G   +  D + IE R+LA  + ++  L
Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++  T    F     +   + R++ K +   L Y  G   ++ ++    +  
Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +                                              K    +     + 
Sbjct: 737 HLA--------------------------------------------KSYIEKYFENFTS 752

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +         +  +NG                        +   SGR          + Y
Sbjct: 753 IKKYFETVKNKAKQNG-----------------------FITTLSGR----------KRY 779

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + D++   M+   K   +   ++L +HDE++ E 
Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839

Query: 637 PDT 639
            D 
Sbjct: 840 KDD 842


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 153/501 (30%), Gaps = 130/501 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G+ VD        + ++ +  KL+ ++  +  G   +    ++L  
Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIA-GEWFNINSPKQLSY 511

Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L +   T+T       VL            + + RM                 
Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                 +G LQ                    P   R H    Q  T      +SDP+   
Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +   G  L+ AD + IE R+LA ++ ++  + AF+   D++  T 
Sbjct: 601 IPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F V  A VT + R+  K +   + Y         +A    ++    A  +       
Sbjct: 661 AEVFGVDIADVTPEMRSQAKAVNFGIVYGISDY---GLARDIKISRKEAAEFIN------ 711

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 +   R  ++   L    +   +
Sbjct: 712 --------------------------------------KYFERYPKVKEYLDNTVKFARD 733

Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           NG  + +  ++R +  +                R+L        R  +N+          
Sbjct: 734 NGFVLTLFNRKRYIKDIKST------------NRNL---RGYAERIAMNSP--------- 769

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP-DTDEFNAS 645
                    +Q  + DI+   M+   +          I+L VHDE++ E P +  +    
Sbjct: 770 ---------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKE 820

Query: 646 MLYHLMTSNPSWAKGLPLKAE 666
           ++   M +    A  +PL  E
Sbjct: 821 IVKREMENAV--ALKVPLVVE 839


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/641 (14%), Positives = 187/641 (29%), Gaps = 159/641 (24%)

Query: 46  DCVHDPVMPQVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           D      + + +   L    EN     + HN  +++ VL       I +  +   ++++ 
Sbjct: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSY 494

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                 +      +  ++S   +          K        D+             E+ 
Sbjct: 495 VLDSGRS------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS------DSQVQEHA 542

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQI 210
             +  V  +++  L P    E +L ++ +            +   G  +D  L   ++  
Sbjct: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSS 265
           +      L++ +  L+ G   +    ++L   LF +        T+T     T Q +   
Sbjct: 602 ISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
           N    P    +   R                                 S+         P
Sbjct: 661 NCGDNPIIKNILEWRQL-------------------------------SKIKSTYADSLP 689

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380
                R  R H       T      + +P+   I     +   +R   I+   KKL+ AD
Sbjct: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +A      + FE   D++    A  F V   +V+   R   K +  ++ 
Sbjct: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y        ++A+   +  +  A  +                                  
Sbjct: 810 YGISPF---RLATQLRIPRSEAADYI---------------------------------- 832

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +R    +   H  + +  N + Q         + I  R+     +   K    N+  
Sbjct: 833 ---KRYFHRFPGIHEYIEKTKNFVRQN-----GYVETIFGRRIHYDEINSPKSSIRNI-- 882

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                         N R+ +N                    +Q  + DI    M++  K+
Sbjct: 883 --------------NERAAINAP------------------IQGSAADITRRAMISVHKS 910

Query: 621 GYD------IVLTVHDEIVCETPDTDEFNASM-LYHLMTSN 654
             D      ++L +HDE+V E P+ +   AS  + H M   
Sbjct: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951


>gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 870

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/500 (14%), Positives = 155/500 (31%), Gaps = 129/500 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L +    +   G  V+        + +  +  +L++E+ +   G   +    ++L  
Sbjct: 474 EMPLLFTLFAMEQAGVRVEAEALRLYGEQLGTKIVELEKEIYAQA-GEAFNINSPKQLGV 532

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L     T+T          KL P+     ++   R      +    + L   +
Sbjct: 533 ILFEKLRLPHGKKTKTGYSTAADVLDKLAPEYPVVEKILEYRQLTKLKSTYA-DGLANYI 591

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            +DGR+                               H + +Q IT      +++P+   
Sbjct: 592 CADGRI-------------------------------HGKFNQTITATGRISSTEPNLQN 620

Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I     +   +R   I  EG   V AD + IE R+LA  +G+Q  + A+   +D++  T 
Sbjct: 621 IPVRMELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITA 680

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           ++ F+    +VT+ QR   K +   + Y   +    +      +     +  +       
Sbjct: 681 SQVFHTPFDEVTELQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEASEYI------- 730

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                               + + +  + +  ++     ++   
Sbjct: 731 ----------------------------------DRYFETYPGIKKFLDDTVAHAKEM-- 754

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                +  +RR VP +      N +                  R  +N            
Sbjct: 755 GYVVTLFGRRRPVPEL---ASSNFMQRSF------------GERVAMNAP---------- 789

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASM 646
                   +Q  + D++   M+         K    +VL VHDE++ E  + + E    +
Sbjct: 790 --------IQGTAADVMKIAMIGVHRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKI 841

Query: 647 LYHLMTSNPSWAKGLPLKAE 666
           L   M         +PL+ +
Sbjct: 842 LKEQMEQAAQ--LDVPLEVD 859


>gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 936

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/639 (14%), Positives = 191/639 (29%), Gaps = 142/639 (22%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
             +  +L+  LEN  +  V  +  F  ++LK     +I +      ++L         L 
Sbjct: 406 EEILSILQPTLENEKIKKVGQHLKFSYSILKRY---NINLAGMAFDVILELYI-----LY 457

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                  + +   ++   ++  F K   ++   + N  +  +  +L   Y    +     
Sbjct: 458 GTANYHDIKNFLDKDTFNVVTNFKKN--YDNYNENNILSDLQNIQLQSLYAAKFIKSLFN 515

Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +   L P               E  L  +   I + G  +D  L +T    +D     L+
Sbjct: 516 LHHTLWPKIEANNKLKKIFEEVEMPLISILSRIENYGVLIDKKLLNTHAVELDYRLHALE 575

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            E   L  G   +    ++L+  L+ +  L +   T                        
Sbjct: 576 LEAYQL-VGTPFNLASTKQLQEILYNQQKLPILKKTPKGAPSTNEEV------------- 621

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                +    K +            R  LQ+   S+               + +R H   
Sbjct: 622 ----LKKLSKKYSMP----------RIILQYRALSKLQSTYINKLIAMINKKSNRVHTSY 667

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q  T      ++ P+   I         +R   IA +   +V AD + IE R++A ++ 
Sbjct: 668 NQTRTSTGRLSSTSPNLQNIPNRNYDGRKIRQAFIAPKNFLIVAADYSQIELRIMAHLSQ 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +  F + +D++  T +  F  A   VT +QR   K +   L Y   A     +A  
Sbjct: 728 DIELINDFLSEKDIHTATASEIFVTALHLVTDEQRQRAKTINFGLIYGMSAF---GLARQ 784

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +                                              ++    +  ++
Sbjct: 785 LSVTCKEA-----------------------------------------QKYVDRYFNRY 803

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +    + +   +      + +  +R  +P +Y                  + +  G
Sbjct: 804 PGVMKYMQHIREHANKY--GYVSTLDGRRLYLPDIYSAN---------------ILQKKG 846

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
             R+ +N                     Q  + DI+ + M++             I++ V
Sbjct: 847 AERAAINAPM------------------QGSAADIIKKAMISIDNWLQKDEIPARIIMQV 888

Query: 629 HDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E   D  +     +  LM     +   +PLK +
Sbjct: 889 HDELVFEVHNDIVDPVVKKIKKLMEEC--FIMDVPLKVD 925


>gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
 gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
          Length = 912

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/522 (18%), Positives = 162/522 (31%), Gaps = 129/522 (24%)

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                +       +    L+  E  L  +   +   G  VD    H L Q     R    
Sbjct: 491 DLAAALDTELADIEATGLLADMELPLLEVLANLESTGIAVDTTHLHDL-QSAFAARVAEA 549

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            E      G   +    ++L+  LF E  +     T+T       + + L  +    F  
Sbjct: 550 AEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTTDADALQSLFEKTQHPFLE 609

Query: 280 RMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +   R A    + ++ L++ +  DGR+  T                             
Sbjct: 610 HLLEHRDATRLKVTVDGLLKTVAEDGRIHTT----------------------------- 640

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLA 390
              +Q +       +++P+   I         +R   +  EG   L+ AD + IE R++A
Sbjct: 641 --FNQTVAATGRLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIEMRIMA 698

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G+   ++AF TGEDL+    +R+F V   +VT + R   K M   L Y   A     
Sbjct: 699 HLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAF---G 755

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A+   ++                                                ++  
Sbjct: 756 LAAQLKISTEEA--------------------------------------------RQQM 771

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
               +R   + + LH+  EQ  + G       RR                 LP       
Sbjct: 772 DAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRY---------------LP------- 809

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624
                    LN+  RQ  RE      L   I Q  + DI+   M++  +A         +
Sbjct: 810 --------DLNSDNRQ-RREVAERAALNAPI-QGTAADIIKVAMIDVQRALREAGLASRM 859

Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
           +L VHDE+V E    +      L    M +       +PL+ 
Sbjct: 860 LLQVHDELVLEVAAGERERVEQLVREKMAAAID--LSVPLEV 899


>gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
 gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
          Length = 885

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 98/651 (15%), Positives = 203/651 (31%), Gaps = 135/651 (20%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            F   D     W    D  + +   LK+ LE+  V     N+  +   L     L I + 
Sbjct: 341 GFVIGDGT--TWLVSRDAELLKQAPLKKLLESPAVAKNVFNAKAQIVGLHR---LGIDLR 395

Query: 92  RWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                L+LA        ++      AL+    ++   +E+  +  K    +   D+    
Sbjct: 396 NVDFDLLLASYLLNTNDNSNDLGQVALEHDYHEVATDEEVYGKGAKRAIPD--DDQTFYT 453

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           H           +  +    +  ++    +  E  L  +   +   G  V+      +  
Sbjct: 454 HLAQKARAINDLRDPLFKKLDDNQQTPLYTEIEVPLTRVLAAMEITGIKVNSQTLKDMGS 513

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
            +      ++ ++ +   G   +    ++L   LF +  L +   T+T     +   +KL
Sbjct: 514 KLTERLADIEDQIYA-AAGEEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKL 572

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
             QA  V +                             LQ+   ++              
Sbjct: 573 ADQAPIVED----------------------------ILQYRQIAKLQSTYITGLLKVIH 604

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAG 383
               + H    Q +T      + DP+   I         +R   + S EG ++  +D + 
Sbjct: 605 SSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDYSQ 664

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQ 442
           +E RVLA + G++   + F+ GED++ +T  R F++    ++ ++ R   K +   + Y 
Sbjct: 665 VELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNFGIVYG 724

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                   +A    ++ +     ++  +  +E+   + +         EH   +      
Sbjct: 725 ISDY---GLAQRIHVSRSQAHEFIQ--NYFKEFPGVKKYIDDTIAFAREHGYVE------ 773

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                               I  +RR +P ++ K          
Sbjct: 774 -----------------------------------TITHRRRYLPDIHAKSFSR------ 792

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---- 618
              RS         R+ +NT                   +Q  + DI+   M+       
Sbjct: 793 ---RSFA------ERTAMNTP------------------IQGSAADIIKIAMIRMKEEIK 825

Query: 619 --KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
             +    ++L +HDE+V E P  +      ++  +M S       +PLK E
Sbjct: 826 QRQLQARMLLQIHDELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVE 874


>gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2]
 gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2]
          Length = 1008

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 106/638 (16%), Positives = 197/638 (30%), Gaps = 144/638 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            VL++ +E+  V     +  F   +L       I +       +++       AL A   
Sbjct: 480 DVLRKLMESEAVLKSGLDIKFISVMLAQH---KITLRTTDDVQLMS------YALDAGRG 530

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIF- 172
           A  + S      ++ +A             RNK +  +       EY      +   ++ 
Sbjct: 531 AHDIESLA----QKWLAHAAIKHGDVIGSGRNKLSLDQVTIERATEYGAETADIIIRLWL 586

Query: 173 --------KRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                   +R+  +    E+ L  +   +  RG  +D  +   L+       ++L+ E+ 
Sbjct: 587 LMKARLISERMNNVYESLERPLIGVLARMERRGIMIDRQVLSRLSGDFAQTASRLEDEIR 646

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            +  G   +    ++L   +F + GL     T+T      +S  +   +   VF      
Sbjct: 647 KIA-GEDINPGSPKQLGDVIFGKMGLPGGQKTKTGAWSTSASILEDLAEEGHVFP----- 700

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                R  L +   S+         P    P+  R H       
Sbjct: 701 ---------------------RKILDWRQVSKLKSTYTDALPNYVNPQTQRVHTTYALAA 739

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      +++P+   I         +R   IA +G KLV AD + IE R+LA +A     
Sbjct: 740 TTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAEKGHKLVSADYSQIELRLLAEIADIPVL 799

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF    D++  T +  F V    +  + R   K +   + Y   A     +A+  G+ 
Sbjct: 800 KQAFHDKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYGISAF---GLANQLGIP 856

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +K     + +E       +M                  +  +   R+ H  V 
Sbjct: 857 REEAGAYIK-----KYFERFPGIRAYM------------------DATRDFCRE-HGYVE 892

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L+                                           GR   Y D+     
Sbjct: 893 TLF-------------------------------------------GRKCHYPDIK---- 905

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
             N + R          +L     Q  + DI+   M+    A         ++L VHDE+
Sbjct: 906 ASNASLRAFNERAAINARL-----QGTAADIIRRAMIRMEDALAEKKLAARMLLQVHDEL 960

Query: 633 VCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEG 667
           V E PD++      ++  +M +   P+    +PL  + 
Sbjct: 961 VFEVPDSEVGDTIPVIQEVMENAAFPAARLSVPLHVDA 998


>gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 895

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/514 (15%), Positives = 161/514 (31%), Gaps = 131/514 (25%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +  +RL      E  L ++   +   G+ V+        Q +     ++ QE+  L  G
Sbjct: 486 MQEMERL--YQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLA-G 542

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL     T+T       VL     +     ++ + R+ A  
Sbjct: 543 TSFNLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAKL 602

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ +  +                                R H    Q +T 
Sbjct: 603 QSTY-VEGLLKVIRKE------------------------------TGRVHTRFHQTLTA 631

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                +S+P+   I         +R     + +   +  AD + IE R+LA ++G++  +
Sbjct: 632 TGRLSSSEPNLQNIPIRLEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 691

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF    D++  T A  F V P QVT   R   K +   + Y         +A    +  
Sbjct: 692 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDF---GLAQNLNIPQ 748

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 +++                                               +   
Sbjct: 749 KEAKRFIES--------------------------------------------YFEKFPG 764

Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   + +  +Q  E G    +  +RR +P ++ +  +          RS         R+
Sbjct: 765 VKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQ---------LRSFA------ERT 809

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
            +NT                   +Q  + D++   M+   +A         ++L VHDE+
Sbjct: 810 AMNTP------------------IQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDEL 851

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E P  +     +L      N +    +PLK +
Sbjct: 852 IFECPKDELAALEVLVRDNMEN-AMTLSVPLKVD 884


>gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
 gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
          Length = 858

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 167/505 (33%), Gaps = 126/505 (24%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
             L      E  L  +  ++   G  +  +       +++ +   L Q++ S   G++ +
Sbjct: 456 NVLSLYREIEMPLTRVLFSMEQEGISIQESFLDEYGALLNEKLETLAQQIYSHA-GMIFN 514

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L   LF E  L       +T   VL   +   P    +   R + S+ +   ++
Sbjct: 515 INSPKQLANVLFDELNLSSGGKKRSTSADVLEKLRGKHPIVDDILEYR-KISKVSSTYID 573

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L + + SD ++                               H   +Q +T      +S
Sbjct: 574 GLKKHIRSDQKI-------------------------------HTSFNQTMTQTGRLSSS 602

Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I     +   +R   +A EG  L+ AD + IE R+LA MA E   +KAF  G D
Sbjct: 603 EPNLQNISIRDELGKEIRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFNEGLD 662

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T    FN +P +V + +R I K +   + Y         ++S   +        +K
Sbjct: 663 IHTKTATLIFNCSPEEVDEHKRRIAKTVNFGIVYGQTEF---GLSSQLNITRKEAGEFMK 719

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                E +     +   + +   E+   +                               
Sbjct: 720 M--YFESYPKIHEYMNQLIDFCKENGYVE------------------------------- 746

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                      +  +RR++P +    DKN +                  R+ +N      
Sbjct: 747 ----------TLFHRRREIPEI---NDKNFMTREF------------GKRAAMNAP---- 777

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD- 640
                         +Q  + D++   M+   +A         ++L +HDE++   PD + 
Sbjct: 778 --------------IQGSAADLIKIAMLKMDQALKDANVNSKMLLQIHDELIFLVPDEEL 823

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKA 665
           +    ++   M S       +PLKA
Sbjct: 824 DLMQKLVKETMESAME--LKVPLKA 846


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 155/500 (31%), Gaps = 128/500 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G+ VD        + ++ +  KL+ ++  +  G   +    ++L  
Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALLQYTKEIENKILKLETQIYQIA-GEWFNINSPKQLSY 511

Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L +   T+T       VL            + + RM                 
Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                 +G LQ                    P   R H    Q  T      +SDP+   
Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +  EG  L+ AD + IE R+LA ++ ++  + AF+   D++  T 
Sbjct: 601 IPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNIDIHSQTA 660

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F V  A VT + R+  K +   + Y         +A    ++    A  +       
Sbjct: 661 AEVFGVDIADVTPEMRSQAKAVNFGIVYGISDY---GLARDIKISRKEAAEFIN------ 711

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                        E +P+       +    + + +  R+ +  V  L+N           
Sbjct: 712 ----------KYFERYPK-------VKEYLDNIVRFARE-NGYVLTLFN----------- 742

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   ++R V  +                         N RSY         R    
Sbjct: 743 --------RKRYVKDIKSANR--------------------NARSY-------AERIAMN 767

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + DI+   M+   +          I+L VHDE++ E P  ++     +
Sbjct: 768 SP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRI 821

Query: 648 YHL-MTSNPSWAKGLPLKAE 666
               M +    A  +PL  E
Sbjct: 822 VKREMENAV--ALKVPLVVE 839


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/642 (16%), Positives = 178/642 (27%), Gaps = 143/642 (22%)

Query: 33  FAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A      P   +D    D    +   + + + +   V H++     V++        + 
Sbjct: 368 IALAAASGPAVCFDPSAVDEPDERAFADWIADPERPKVMHDAK---RVMRVFDEQGWAVA 424

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                  LA     P       +AL +       G+EL                 +    
Sbjct: 425 GAAMDTALAAYLVKPGRRSFALDALSVEYL----GRELSPAAAAESGQLAFGADEQAEQD 480

Query: 152 EAWRLFG-----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                           G         + L      E  +  L   +   G   D      
Sbjct: 481 ALMIQARTILDLGEAFGRRLAEVGAVELLR---DVELPISALLARMEKAGIAADRDWLDR 537

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           ++Q       +  +E      G   +    ++L+   F E GL      +T       + 
Sbjct: 538 MDQRFAGAVQQAVKEAHD-AVGHEFNLGSPKQLQEVFFGELGLPKTKKIKTGYTTDADAL 596

Query: 267 KKLTPQAIQ---VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
             L  Q      V   R R        +  L++A+   GR+  T                
Sbjct: 597 AWLATQTDHELPVIMLRHREQARLRSTVEGLIKAIAPGGRIHTT---------------- 640

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEG-KKLV 377
                           +Q +       ++DP+   +         +R   +  EG + L+
Sbjct: 641 ---------------FNQTVAATGRLSSTDPNLQNVHVRTEEGRAIRRGFVVGEGFESLL 685

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RV+A ++ ++  ++AF +GEDL+ T  ++ F VA ++V  + R   K M  
Sbjct: 686 TADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMSY 745

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            L Y   A    +     G+  +    L+ T                             
Sbjct: 746 GLAYGLSAFGLSQ---QLGITPDEARKLMDTFF--------------------------- 775

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                             R   + + L +  ++    G       RR             
Sbjct: 776 -----------------ERFGGVRDYLQRVVDEARATGYTETMLGRRRY----------- 807

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
               LP                LN+  RQ  RE      L   I Q  + DI+   M+  
Sbjct: 808 ----LP---------------DLNSDNRQ-RREMAERMALNAPI-QGTAADIVKIAMLRV 846

Query: 618 ------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MT 652
                  K    ++L VHDEIV E    +      L    M 
Sbjct: 847 DEALTKEKLSSRMLLQVHDEIVVEVAPGEREQVEALVRREMA 888


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/642 (14%), Positives = 194/642 (30%), Gaps = 180/642 (28%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK   EN  +  V H+S     VL      +I          +A     PS    +  
Sbjct: 376 EILKNLFENEKIKKVCHDSKKVYVVLNKH---NITAKNIAFDTKIAAYLLQPSKSDYM-- 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                   +++  E +      E      +                          I+++
Sbjct: 431 --------LKDLIEEMLLLSLKEYDNIKINETYYIKD-------------------IYEK 463

Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LE           L + E  L  +  ++   G+ VD      + +    E   L++E+  
Sbjct: 464 LEKDIKESNMEELLYTVELPLVEVLASMECAGFRVDENRLTEIGEKFKKEIETLEKEIHE 523

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281
           L      + +  ++L   LF +  L +   T+T       VL   K   P   ++   R 
Sbjct: 524 LAD-EEFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKIIEYRQ 582

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                +   +  L   ++ DG++                               H   +Q
Sbjct: 583 ITKLDSTY-VEGLKNVIDGDGKI-------------------------------HSSFNQ 610

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGE 395
            +T      +++P+   I         +R   + +  +  +  AD + IE R+L+ +A +
Sbjct: 611 TVTTTGRLSSTEPNLQNIPIKHEMGREIRKVFVPNNNESVIFSADYSQIELRILSHIADD 670

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+  +D++  T +  F V   +VT   R+  K +   + Y  GA +        
Sbjct: 671 EKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLS---KDI 727

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            ++       + T      + + + +   +       A  D F+                
Sbjct: 728 NVSRKEAKEYIDT--YFSRYPNVKKYIDEIIS----KAEVDGFV---------------- 765

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                  I  ++R +P +                R+ + R  G 
Sbjct: 766 ---------------------TTILNRKRYIPEI--------------QSRNKIVRGFGE 790

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
            R  +NT                   +Q  + DI+   M+              ++L VH
Sbjct: 791 -RLAMNTP------------------IQGSAADIIKLAMVEVYNELKNRNLKSTLILQVH 831

Query: 630 DEIVC-----ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE++      E  +        + ++M         +PL+A+
Sbjct: 832 DELILNVYKDELEEVKNMVVDKMENVMKLL------VPLEAD 867


>gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5]
 gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5]
          Length = 871

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/619 (14%), Positives = 183/619 (29%), Gaps = 167/619 (26%)

Query: 73  SYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPS----ALKAVG-EALKLSSQKMEEG 126
           + F+   LK          +  C  + +A     P       + V  E L L    ++E 
Sbjct: 384 AMFD---LKKYLPHVKAPDQEKCFDVTVAAYLLNPLKNNYDYEDVAREQLGLM---IDEK 437

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK----GDVTVTREIFKRLEPLSSKE 182
            +++ + C                   +  +  +       D     +        +  E
Sbjct: 438 ADVMTKAC-------------------YEAYTAFAAVKPLRD---KMQAEGMYHLFTDIE 475

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L +    +   G  V+        + +     +L++E+  +  G   +    ++L   
Sbjct: 476 MPLVFTLFDMEQAGIQVEAEALKFYGEQLGGRIVELEKEIYEMA-GETFNINSPKQLGVV 534

Query: 243 LFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           LF    L     T+T   T   VL       P   ++   R      +            
Sbjct: 535 LFDHMQLPNGKKTKTGYSTAADVLDKLAPDYPVVEKILEYRQLTKLKSTY---------- 584

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DG       ++GA                    R H + +Q IT      +++P+   I
Sbjct: 585 ADG----LAVYIGA------------------DGRIHGKFNQTITATGRISSTEPNLQNI 622

Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                +   +R   +  EG   + AD + IE R+LA  +G++  ++A++   D++  T +
Sbjct: 623 PVRMELGRLIRKVFVPKEGYVFIDADYSQIELRILAHCSGDEQLIQAYKDARDIHRMTAS 682

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F+    +VT+ QR   K +   + Y   +    +      +     A  ++       
Sbjct: 683 QVFHTPFEEVTELQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAQYIE------- 732

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                              + + +  +    ++     ++  E 
Sbjct: 733 ----------------------------------NYFETYPGIKRFLDDTVAHAKE--EG 756

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
               +  +RR VP +   K  N +                  R  +N             
Sbjct: 757 YVVTLFGRRRPVPEL---KSSNFMQRNF------------GERVAMNAP----------- 790

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SML 647
                  +Q  + DI+   M+   +          ++L VHDE++ E    +      +L
Sbjct: 791 -------IQGSAADIMKIAMIGVNRELKEKGLRSRMILQVHDELLIEAHREEIGEVQEIL 843

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M         +PL  +
Sbjct: 844 KRQMEQAAD--LDVPLIVD 860


>gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
 gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
          Length = 871

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/490 (16%), Positives = 152/490 (31%), Gaps = 131/490 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L +    +   G  V+          +  +  +L++E+     G   +    ++L
Sbjct: 473 DIEMPLVFTLFDMEQNGIRVEADALKQYGDQLAGKIAELEKEIYEEA-GETFNINSPKQL 531

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF    L     T+T   T   VL       P   ++   R      +    + L  
Sbjct: 532 GVVLFENMKLPGGRKTKTGYSTAADVLEKLAPEHPVVAKILEYRQYTKLKSTYA-DGLAN 590

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  DG                               R H + +Q IT      +++P+ 
Sbjct: 591 YIQDDG-------------------------------RIHGKFNQTITATGRISSTEPNL 619

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I     +   +R   I  EG + V AD + IE RVLA  +G++  ++A++   D++  
Sbjct: 620 QNIPVRMELGRLIRKVFIPEEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRI 679

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T ++ F++   +VT  QR   K +   + Y   +    +      +     A  +     
Sbjct: 680 TASQVFHIPFDEVTPQQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAKYID---- 732

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                 +   +  +      L  A    
Sbjct: 733 -------------------------------------DYFATYPGIKTF---LDHAVTHA 752

Query: 532 IENGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            E G  + +  +RR VP +              S  + + R  G  R  +N+        
Sbjct: 753 KEEGYVVTLFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNSP------- 790

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET--PDTDEF 642
                      +Q  + DI+   M+         K    +VL VHDE++ E   P+ DE 
Sbjct: 791 -----------IQGAAADIIKIAMIRVNQRLKDQKMKSRLVLQVHDELLIEAYEPELDEV 839

Query: 643 NASMLYHLMT 652
             ++L   M 
Sbjct: 840 Q-NILKEEME 848


>gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 914

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 111/616 (18%), Positives = 182/616 (29%), Gaps = 145/616 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + +   V H++     +++      + +        L+     P       +AL L  
Sbjct: 400 LGDPERPKVMHDAK---GLMRVFGEHGMTVAGVAMDTALSAYLVKPGRRTFALDALSLEY 456

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
                G+EL+                  +     R      +  + +   +  RL     
Sbjct: 457 L----GRELV-----PAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGA 507

Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              L+  E     L   +   G   D A    + +       +  +E  +   G   +  
Sbjct: 508 EGLLTDIELPTSALLARMERAGIAADRAHLEEMERQFAGAVEQAVREAHA-AVGHEFNLG 566

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKL 291
             ++L+  LF E  L     T+T       S   L  Q      V   R R        +
Sbjct: 567 SPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTV 626

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++++  DGR+  T                                +Q +       +
Sbjct: 627 EGLIKSIAPDGRIHTT-------------------------------FNQTVAATGRLSS 655

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +DP+   I         +R   +  EG + L+ AD + IE RV+A ++ ++  + AF +G
Sbjct: 656 TDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSG 715

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+ T     FNV PA V  + R   K M   L Y   A    +     G+       L
Sbjct: 716 EDLHRTVAGYVFNVEPAAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEAGEARAL 772

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           + T                                               R   + + LH
Sbjct: 773 MDT--------------------------------------------YFERFGGVRDYLH 788

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +  E+    G       RR                 LP                LN+  R
Sbjct: 789 RVVEEARATGYTATMLGRRRY---------------LP---------------DLNSDNR 818

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE-TPD 638
           Q  RE      L   I Q  + DI+   M+   +A         ++L VHDEIV E  P 
Sbjct: 819 Q-RREAAERMALNAPI-QGTAADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELAPG 876

Query: 639 TDEFNASMLYHLMTSN 654
             E    +L   M + 
Sbjct: 877 EREPVEEILRREMAAA 892


>gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4]
          Length = 901

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/506 (16%), Positives = 157/506 (31%), Gaps = 115/506 (22%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V    +    L+   + E  L Y    +  +G  +D          + V   +L+Q + S
Sbjct: 488 VIAEIKEEGMLDIYENIEMPLVYTLFDMELQGIAMDKEALAEYGSRLSVRINELEQSIYS 547

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281
              G   +    ++L   LF + G+     T+T   T   VL       P    +   R 
Sbjct: 548 QA-GEEFNINSPKQLGVILFEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQ 606

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            A   +    + L   ++ DGR+R T                                 Q
Sbjct: 607 LAKLKSTYA-DGLAACVDEDGRIRSTFM-------------------------------Q 634

Query: 342 IITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +++P+   I     +   +R      +    + AD + IE RVLA M+G++
Sbjct: 635 TVTATGRISSTEPNLQNIPIRMELGREIRKVFYPKKDCVFLDADYSQIELRVLAHMSGDE 694

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF+ G+D++ +T +  FN    +VT  QR   K +   + Y   A     +A   G
Sbjct: 695 NLIDAFKAGQDIHRSTASLVFNTPFDEVTDLQRRRAKAVNFGIVYGISAF---GLAKDIG 751

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +        +           A        E    HA E  ++ T               
Sbjct: 752 VGRKEAQEYIDNYFV------AYPKMHEFLEGLKSHAKEKGYVTT--------------- 790

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                                 +  +RR +P +      N +                  
Sbjct: 791 ----------------------MYGRRRPIPEL---ASSNFMTRQF------------GE 813

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           R  +N+  +         G   + I  A+   +     +        ++L VHDE++ ET
Sbjct: 814 RVAMNSPIQ---------GTAADIIKIAM---VNVHDRLLKEGLKSKLLLQVHDELLVET 861

Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGL 661
            +++       +   M +    A  L
Sbjct: 862 LESERPQVEKLIAEEMENAAKLAVDL 887


>gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28]
 gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28]
          Length = 890

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/547 (16%), Positives = 185/547 (33%), Gaps = 76/547 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +  K  L N ++     ++   R ++   +   I I      L++A     P+       
Sbjct: 369 EAFKAWLANGEMRKHTFDAK--RAIVALKW-KGIDIQGIDFDLLIAAYLLDPADTDKDFR 425

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 426 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 474

Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            LE L   EQ          L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 475 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 534

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 535 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 593

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 594 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 622

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 623 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIIYAADYSQIELRVLAHIAND 682

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 683 KGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 739

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R ++   +  S
Sbjct: 740 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-RRYIPEITS 792

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVG 574
           R   L +   +    T   G A    K   + +    +++     L+L     L++    
Sbjct: 793 RNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQVHDELIFEAPK 852

Query: 575 NNRSYLN 581
                L 
Sbjct: 853 EEIEKLE 859


>gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
          Length = 878

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 101/655 (15%), Positives = 194/655 (29%), Gaps = 139/655 (21%)

Query: 19  CGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMPQVLKEALENTDVTIVAHNSYF 75
            G+  +AE+  ++  A       +   +    V    +   L        V      + F
Sbjct: 323 VGVQIFAEEGDLLGVAIAVSREEIYYVEVSGFVSGEYLADKL------AQVAKQTQIAAF 376

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
              VL    N++    +     V A     P         LK +    + GKE + +   
Sbjct: 377 HVKVLLKYVNVET-WTQTFGAEV-AAYLLNP---------LKTAYDYEDIGKEYLGQIFP 425

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQEL 185
           G         +K    E              V   +   LE               E  L
Sbjct: 426 GRQEVVGKKGDKDALAEKPEEMKRLGCFMAYVALAVKAPLEEALREAGMERIFQEIEMPL 485

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
            +   ++   G  V+        + + V   +L++++     G   +    ++L   LF 
Sbjct: 486 VFTLNSMEKEGIQVEGEALRVYGEQLQVRIGELEKQICGQA-GEDFNINSPKQLGAILFE 544

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           +  L     T+T          KL P+   V                            R
Sbjct: 545 KMKLPGGKKTKTGYSTAADVLDKLAPKHPIV----------------------------R 576

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----I 360
             L++   ++             +    R H    Q IT      +++P+   I     +
Sbjct: 577 DILEYRQLTKLKSTYADGL-AGYIGEDGRIHSTFHQTITATGRISSTEPNLQNIPIRMEL 635

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   +  EG   + AD + IE RVLA M+G++  ++A+   +D++  T ++ F+  
Sbjct: 636 GRLIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQVFHTP 695

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT  QR   K +   + Y   +    +      +     A  ++       +   + 
Sbjct: 696 FEEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAADYIE--RYFSTYPKIKG 750

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           F     +   +   ED ++ T   R                                   
Sbjct: 751 FL----DGLVKKGKEDGYVTTMFGR----------------------------------- 771

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
             RR +P +   K  N +                  R  +N+  +         G   + 
Sbjct: 772 --RRPIPEL---KSSNFMQRSF------------GERIAMNSPIQ---------GTAADI 805

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654
           I  A++R       +        ++L VHDE++ ET + + E  + +L   M   
Sbjct: 806 IKIAMNR---VYSRLRQEGLRSKLILQVHDELLIETWEEELEQVSEILLEEMRQA 857


>gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
 gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
          Length = 886

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 110/664 (16%), Positives = 199/664 (29%), Gaps = 144/664 (21%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y E     L  F   D    L     D +    LK+ LE+  V     N+  +   L   
Sbjct: 334 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVERDVFNAKAQLVGLHR- 389

Query: 84  FNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
             L + +      L+LA      S     L  +  A      + +E  E+  +  K    
Sbjct: 390 --LGVDLAGVDFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDE--EVYGKGAK--RA 443

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
               D     H           K  +       ++L      E+ L  +   +   G  V
Sbjct: 444 IPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHV 503

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D A    +   +     +L+Q +     G   +    ++L   LF +  L +   T+T  
Sbjct: 504 DAATLKEMGSKLVEREAELEQAIYQEA-GEEFNINSPKQLGVILFEKMKLPVIKKTKTGY 562

Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                VL       P    +   R   S+     +  L++ ++ D               
Sbjct: 563 STAVDVLEKLADRAPIVQDILAYRQ-ISKLQSTYITGLLKVIHQDD-------------- 607

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                            + H    Q +T      + DP+   I         +R     S
Sbjct: 608 ----------------QKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPS 651

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQR 429
             G K+  +D + +E RVLA + G++     F  G+D++  T  R F++ +  +VT + R
Sbjct: 652 APGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMR 711

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y         +A    ++       +++      +            + 
Sbjct: 712 RQAKAVNFGIVYGISDY---GLAQNIHVSRPQAHEFIQS------YFKEFPGVEKYVHDI 762

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            E A +  ++ T                                     +  +RR +P +
Sbjct: 763 VELAKQQGYVET-------------------------------------LTHRRRYLPEI 785

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
           + K             RS         R  +NT                   +Q  + DI
Sbjct: 786 HAKSFTQ---------RSFA------ERMAMNTP------------------IQGSAADI 812

Query: 610 LAEGMMNATKAG------YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLP 662
           +   M+   KA         ++L +HDE+V E P +       ++  +M S       +P
Sbjct: 813 IKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIAILEELVPSIMDSAVK--LDVP 870

Query: 663 LKAE 666
           LK E
Sbjct: 871 LKVE 874


>gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3]
 gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3]
          Length = 869

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 101/585 (17%), Positives = 187/585 (31%), Gaps = 76/585 (12%)

Query: 28  VCVILFAFGFD-DHPVELWDC--VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
             + L       D  V   D     D V+   L++  +  D     +N   +   LK   
Sbjct: 324 PSLTLMGVALACDEQVYYVDIEHAQDDVITP-LRDFFKRKDTEFYGYNIKRDNHALK--- 379

Query: 85  NLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           N  I IH     L LA      G   + + +     L     + GKE             
Sbjct: 380 NAGIHIHNITLDLALAEHLINGGAKISYQTLLVDHGLVESAGKYGKEWGQL--------S 431

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------PLSSKEQELWYLDQTINDR 195
           L     P     +  FGE+      + + + + L+         + E  L  +  TI   
Sbjct: 432 LPILKSPAKPAEY--FGEFVSHLPKIKKSLLEELKVKGLEDLFFNMEMPLEKVLFTIERN 489

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +DV     L + +  E   L  ++ ++  G   + +  ++L   L+ + GL   D  
Sbjct: 490 GMPLDVEDLQELERTLSEELAILTDDIYTVA-GTSFNIKSPKQLSDVLYNKLGLTPIDKA 548

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL++         ++                                 F    +
Sbjct: 549 RSTKAEVLAALLGEHEIVEKILA-------------------------------FRAIEK 577

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI- 369
                    P Q  P  SR H   +Q+ T        DP+   I         +R     
Sbjct: 578 LLSTYVKALPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCD 637

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             +    + AD + IE R LA ++ ++    AF + ED++  T ++ F+V   +VTK QR
Sbjct: 638 TRQNNYFLSADYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQR 697

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y   A     ++    ++++    L+      + +     F        
Sbjct: 698 MQAKTVNFGIIYGQQAY---GLSKILKISVSEAQKLIDA--YFDRYPAVARFINETINEA 752

Query: 490 PEHAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
            E+      +G   ER+   W +  +SR +        A    I+   A + +       
Sbjct: 753 CENLRVKTLLGR--ERIIDNWTEFSNSRAAS----GRLAVNTRIQGSAAELIKLAMLQLA 806

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             ++K K    ++L     L++      +  + T  R +      
Sbjct: 807 AALEKRKLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAMI 851


>gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18]
 gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18]
          Length = 890

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/547 (16%), Positives = 185/547 (33%), Gaps = 76/547 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +  K  L N ++     ++   R ++   +   I I      L++A     P+       
Sbjct: 369 EAFKAWLANGEMRKHTFDAK--RAIVALKW-KGIDIQGIDFDLLIAAYLLDPADTDKDFR 425

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 426 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 474

Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            LE L   EQ          L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 475 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 534

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 535 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 593

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 594 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 622

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 623 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 682

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 683 KGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 739

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R ++   +  S
Sbjct: 740 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-RRYIPEITS 792

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVG 574
           R   L +   +    T   G A    K   + +    +++     L+L     L++    
Sbjct: 793 RNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQVHDELIFEAPK 852

Query: 575 NNRSYLN 581
                L 
Sbjct: 853 EEIEKLE 859


>gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 937

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/511 (18%), Positives = 158/511 (30%), Gaps = 135/511 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVA----LAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L   E  L  L   +   G  VDV     L        D  +      +   T G+  + 
Sbjct: 526 LQELEIPLSRLLARMELTGIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNL 585

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---K 290
              ++L+  LF    +     T+T     + S + L  Q    F   + A R A      
Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHRDATKLRQT 645

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L+E +  DGR+  T                                 Q         
Sbjct: 646 VEGLLETVAPDGRIHTT-------------------------------YSQTAAATGRLS 674

Query: 351 TSDPDPLQII-----SDCVRSCVIA----SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           +  P+   I         +R   +A     E   L+ AD + IE R++A ++ ++  ++A
Sbjct: 675 SLHPNLQNIPVRTEAGRRIRGVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQA 734

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  GEDL+    ++ F V P +VT +QRA  K M   L Y   +     ++    ++++ 
Sbjct: 735 FREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSF---GLSKQLKISVDE 791

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              L+K                                                R   + 
Sbjct: 792 ARGLMKGYF--------------------------------------------DRFGGVR 807

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           + L     Q  ++G       RR                 LP                L+
Sbjct: 808 DYLRDVVAQARQDGYTSTIEGRRRY---------------LP---------------DLS 837

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE 635
           +  RQL R+      L   I Q  + DI+   M++             ++L VHDE++ E
Sbjct: 838 SDNRQL-RDMAERAALNAPI-QGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILE 895

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
            P  + E + ++L   M         +PL  
Sbjct: 896 VPAAELEQSTALLKERMGRAAE--LSVPLDV 924


>gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3]
 gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3]
          Length = 890

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/547 (16%), Positives = 185/547 (33%), Gaps = 76/547 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +  K  L N ++     ++   R ++   +   I I      L++A     P+       
Sbjct: 369 EAFKAWLANGEMRKHTFDAK--RAIVALKW-KGIDIQGIDFDLLIAAYLLDPADTDKDFR 425

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 426 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 474

Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            LE L   EQ          L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 475 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 534

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 535 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 593

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 594 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 622

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 623 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 682

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 683 KGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 739

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++ T   R ++   +  S
Sbjct: 740 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-RRYIPEITS 792

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVG 574
           R   L +   +    T   G A    K   + +    +++     L+L     L++    
Sbjct: 793 RNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQVHDELIFEAPK 852

Query: 575 NNRSYLN 581
                L 
Sbjct: 853 EEIEKLE 859


>gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115]
          Length = 926

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 161/531 (30%), Gaps = 137/531 (25%)

Query: 160 YCKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              G   VT  + + L P   +         E+ L  +   +  RG  +D      L   
Sbjct: 498 DAAGRAAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGA 557

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSS 265
                  L+ E+     G   S R   +L+T L+ E GL     T+ T +R      L  
Sbjct: 558 AAARLAALETEIHQH-VGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEP 616

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +   P    V   R                      +LRGT                 P
Sbjct: 617 LRDEHPVIPLVLEFREL-------------------DKLRGT------------YLDPLP 645

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
               PR  R H    Q         + +P+   I         +R   IA +G  L+ AD
Sbjct: 646 SLVNPRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEMGREIRKGFIADKGYCLISAD 705

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +A +    +AF  G D++  T A+   +    VT  QR   K +   + 
Sbjct: 706 YSQIELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVL 765

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y   A    ++++  G++                + +A  F       +P          
Sbjct: 766 YGMSA---HRLSNELGIS----------------YVEAAGFIETYFNTYP---------- 796

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                     R    R  E      Q + +T       +  +RR VP             
Sbjct: 797 --------GIRGYIDRTLEFGRT--QGYVET-------MYGRRRYVP------------- 826

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--- 617
                            +  N   R+      Y        +Q  + DI+   M+     
Sbjct: 827 ---------------ELAATNRNVREAGERLAY-----NMPIQGTAADIIKHAMIRLDRE 866

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
               G  ++L VHDE++ E P+    + + L   +M         +PL  E
Sbjct: 867 LEALGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVE 915


>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
 gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
          Length = 971

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 102/613 (16%), Positives = 176/613 (28%), Gaps = 144/613 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
           L +      AH+       L     L   +        LA    LP   +       L+ 
Sbjct: 451 LADPAKPKAAHDVKGPMLALAE---LGFTLAGVTSDTALAAYLALPGQRSFDLGDLVLRY 507

Query: 119 SSQKMEEGKELIARFCKGETHECLYD---RNKPNHREA------WRLFGEYC-KGDVTVT 168
             ++++  +            +   D          EA       R  GE     D  + 
Sbjct: 508 LHRELKADEA-------PSDGQLTLDVEVEGVEESAEAEVDVVRARAVGELADALDGDLE 560

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           R    RL  L   E  L  +   +   G   D      L      E TK+ +    +  G
Sbjct: 561 RRSAARL--LRDIELPLLTVLAGMERAGIAADAEYLADLQSQYGTEVTKVVEAAHEI-VG 617

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +    ++L+  LF E GL      +T       +   L   +               
Sbjct: 618 RPFNLGSPKQLQQILFEELGLPKTKKIKTGYTTDADALAWLATNSEHPL----------- 666

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                          +   L+    +R       + P   +    R H   +Q+I     
Sbjct: 667 ---------------IPTLLRHRDVARLKTVVESLLPM--IDDAGRIHTTFNQMIAATGR 709

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAF 402
             ++DP+   I         +R   +   G   L+ AD + IE R++A ++G+   ++AF
Sbjct: 710 LSSTDPNLQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDAGLIEAF 769

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +GEDL+    A++FN+  A+V  + R   K M   L Y   A     +A+  G++ +  
Sbjct: 770 ASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYGLAYGLSAY---GLATQLGIHPDEA 826

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                       +       +R   + +
Sbjct: 827 --------------------------------------------RDQMEAYFARFGGVRD 842

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            L    +Q  ++G       RR                 LP                  T
Sbjct: 843 FLRGVVDQARKDGYTETILGRRRY---------------LPDL----------------T 871

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636
           +     R+      L   I Q  + DI+   M+   +          ++L VHDE+V E 
Sbjct: 872 SDNSQRRQMAERMALNAPI-QGSAADIIKIAMLGVDRGLRDAGLRSRLLLQVHDELVLEI 930

Query: 637 PDTDEFNASMLYH 649
              +   A  L  
Sbjct: 931 APGERERAEALVR 943


>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 852

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 112/632 (17%), Positives = 196/632 (31%), Gaps = 151/632 (23%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            L +  V    H    +  VL      + + +      + L      PS  +       L
Sbjct: 336 LLADPAVKKGGH----DLKVLSLLLGGMKLTLQGAHDDVELLSYLLNPSRRE-----HAL 386

Query: 119 SSQKMEE-GKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRL 175
                E  G EL A      T E    R    H   E    +G        +   +++ L
Sbjct: 387 PDLSRERLGLELPAL---PATAEGKKGRPLVEHSAEEVAAAYGARADAARRLAPRLWEEL 443

Query: 176 EPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E +         E  L  +   +  +G  +D A+  TL+  VD E     + + +L  G 
Sbjct: 444 EAIGLAALARDMELPLLPILARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLA-GQ 502

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +     +L   L+ +  L +    +T   T Q VL    +  P    +   R   S+ 
Sbjct: 503 EFNVGSNPQLAQVLYEKLQLPILKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKL 561

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               L+TL   +  D                                R H    Q  T  
Sbjct: 562 KSTYLDTLPGLVAKD-------------------------------GRIHTTYHQAATAT 590

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +SDP+   I     +   +R   +A  G +LV AD + +E R+LA +A +   L A
Sbjct: 591 GRLSSSDPNLQNIPVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDA 650

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+  ED++  T A  F V P +V +DQR + K +   + Y               +++  
Sbjct: 651 FQHDEDIHSRTAAEIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLST---RLSISVEE 707

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              +++                                            +  +R + + 
Sbjct: 708 ARDIIE--------------------------------------------RYFTRYAGIR 723

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             L    E+  + G       RR             L+  L S    V +        + 
Sbjct: 724 RYLEDTVERARKTGYVETMFGRRR------------LMADLNSKNRAVAQAAERAAINM- 770

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635
                               +Q  + D++ + M+   +A         ++L VHDE++ E
Sbjct: 771 -------------------PIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFE 811

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
            P+ +      L    M+S  +    +PLK +
Sbjct: 812 APEAEVDRVKALARQCMSSVAT--LKVPLKVD 841


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/520 (16%), Positives = 152/520 (29%), Gaps = 129/520 (24%)

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             D  ++R+  +    ++  E  L  +   +   G   D      L      E     Q 
Sbjct: 480 AIDAELSRDGEQSARLMAEVELPLMRVLAGMERTGIAADTQYLSELEAHFAAEVKAAAQG 539

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
                 G   +    ++L+  LF E GL      +T       + + L  Q        +
Sbjct: 540 AYE-AVGREFNLGSPKQLQEILFGELGLPKTKRIKTGYTTDADALQWLYGQNPHPVLGHL 598

Query: 282 RASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              R        ++ L+++++ DGR+  T                               
Sbjct: 599 LRHRDVAKLKTTVDGLLKSVSDDGRIHTT------------------------------- 627

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWM 392
            +Q +       +++P+   I         +R   +   G + L+ AD + IE R++A +
Sbjct: 628 FNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGTGYECLLTADYSQIEMRIMAHL 687

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  + AF +G D +  T +  F V    VT DQR   K M   L Y   A    +  
Sbjct: 688 SADEALIDAFNSGLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGLAYGLSAFGLSQ-- 745

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+       L++T                                            
Sbjct: 746 -QLGVTAEEARGLMET-------------------------------------------- 760

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             +    + + L +   +   +G       RR                 LP         
Sbjct: 761 YFAGFGGVRDYLQEVVARARRDGYTESVLGRRRY---------------LP--------- 796

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626
                  L +  RQ  RE      L   I Q  + DI+   MMN   A         ++L
Sbjct: 797 ------DLVSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMMNVDAAVREAGLRSRMLL 848

Query: 627 TVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
            VHDE+V E    +      L    M         +PL+ 
Sbjct: 849 QVHDELVFEVAPGEREALEALVRREMGGAFP--LSVPLEV 886


>gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
 gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
          Length = 877

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 101/630 (16%), Positives = 195/630 (30%), Gaps = 140/630 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L E LEN     +  ++            L+I +      ++LA     P   ++ V  
Sbjct: 358 ELIEWLENDHNNKIVFDAKKTYVAAHR---LEINLQHIDFDVMLASYIINPSRTIEDVQS 414

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +   +Q     K  IA + KG+  +   D     H  A       CK  ++       +
Sbjct: 415 VVSYYNQNF--VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDILSDHNQ 472

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           ++ L++ E  L  +   + + G   DV   + L ++ +  + KLD  +  +    G   +
Sbjct: 473 MDLLNNLELPLARILADMEETGIYTDV---NDLKEMQNELQEKLDNLVSEIYEAAGESFN 529

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 530 INSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQL------- 582

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 583 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 617

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA M  ++   +AF 
Sbjct: 618 SSIDPNLQNIPIRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFI 677

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +     G+      
Sbjct: 678 HGDDIHAATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKKAK 734

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A  + ++ T                      
Sbjct: 735 AFID------DYLASFPGVKQYMTDIVKDAKANGYVETLL-------------------- 768

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                             +RR +P +  +           + RS         R+ +NT 
Sbjct: 769 -----------------HRRRYIPDITSRNF---------NLRSFA------ERTAMNTP 796

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
                             +Q  + DI+   M+   K          ++L VHDE++ E P
Sbjct: 797 ------------------IQGSAADIIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVP 838

Query: 638 DTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            ++  + S  +  +M +  + A  +PL  +
Sbjct: 839 KSEVQDFSEFVEEIMDNALTLA--VPLLVD 866


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 104/695 (14%), Positives = 211/695 (30%), Gaps = 169/695 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57
             + ID ET S        +  Y     +I  +  F +             +      ++
Sbjct: 341 NYISIDTETSS--------LDTY--TAKLIGISISFKEFEGYYIPIETKGKIYIEKHYII 390

Query: 58  KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           ++   L  ++  I+  N  F+  +LK      IP   +  T++ A      S +     A
Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            K    K  + +++I              +N      +  +   Y   D  +T  +F   
Sbjct: 449 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLFNIF 495

Query: 176 EPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                KE EL+ L   I            + G  +D        + +  E   ++ E+  
Sbjct: 496 TEKL-KEDELYELMHEIEMPFNNVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK 554

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMR 282
            + G+  +    +++   LF +  L L +  +   T  +VL S ++       +  +R  
Sbjct: 555 -SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIGNLIKHRRI 613

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +    + L+E +N                               + +R H    Q 
Sbjct: 614 AKLKSTYT-DNLIELINY------------------------------KTNRLHTSFIQT 642

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            T      + +P+   I         +R       G   + AD + IE  +LA ++ ++ 
Sbjct: 643 RTATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDET 702

Query: 398 KLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
            +KAFE  +D+++ T ++ F +    ++T + R I K +   +                 
Sbjct: 703 LIKAFENNKDIHIETASKLFKIEEKEKITPNLRRIAKSINFGII---------------- 746

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                        + +    A E        +    ++   + +
Sbjct: 747 ----------------------------YRMSDFRLAKELGITKEEAKGFINSYFDSYPK 778

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + E                          +  +   K+         S   L  R     
Sbjct: 779 IKEF------------------------IINQINFVKNTGY------SETILKRRRYIKE 808

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
            +  N   R              + +Q  + D +   M+         K    I+L VHD
Sbjct: 809 INSNNYLERSAAERIA-----INSTIQGSAADYMKIAMIKVFNEFKNKKMESKILLQVHD 863

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           E++ E+P  +E     +  +M    ++   LPL+A
Sbjct: 864 EMLIESPIKEENEVKKILKIMMET-AYTLNLPLRA 897


>gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
           [Deinococcus deserti VCD115]
          Length = 923

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 161/531 (30%), Gaps = 137/531 (25%)

Query: 160 YCKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              G   VT  + + L P   +         E+ L  +   +  RG  +D      L   
Sbjct: 495 DAAGRAAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGA 554

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSS 265
                  L+ E+     G   S R   +L+T L+ E GL     T+ T +R      L  
Sbjct: 555 AAARLAALETEIHQH-VGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEP 613

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +   P    V   R                      +LRGT                 P
Sbjct: 614 LRDEHPVIPLVLEFREL-------------------DKLRGT------------YLDPLP 642

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
               PR  R H    Q         + +P+   I         +R   IA +G  L+ AD
Sbjct: 643 SLVNPRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEMGREIRKGFIADKGYCLISAD 702

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +A +    +AF  G D++  T A+   +    VT  QR   K +   + 
Sbjct: 703 YSQIELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVL 762

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y   A    ++++  G++                + +A  F       +P          
Sbjct: 763 YGMSA---HRLSNELGIS----------------YVEAAGFIETYFNTYP---------- 793

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                     R    R  E      Q + +T       +  +RR VP             
Sbjct: 794 --------GIRGYIDRTLEFGRT--QGYVET-------MYGRRRYVP------------- 823

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--- 617
                            +  N   R+      Y        +Q  + DI+   M+     
Sbjct: 824 ---------------ELAATNRNVREAGERLAY-----NMPIQGTAADIIKHAMIRLDRE 863

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
               G  ++L VHDE++ E P+    + + L   +M         +PL  E
Sbjct: 864 LEALGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVE 912


>gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
 gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
          Length = 885

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 102/639 (15%), Positives = 196/639 (30%), Gaps = 155/639 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           Q L+  LE+  V     +       L     L I  +     ++LA              
Sbjct: 364 QPLQTLLEDQAVNKNVFDLKRTIVGLHR---LGIKANNINYDMLLASYLVNNEN------ 414

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +S  + E  +L   +      +      K    +    F       + +       
Sbjct: 415 ----NSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDEEIFFNHLAGKVLAIEALKPTL 470

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           L+ L+  EQ+  Y         +   +   G   D +    L        T+L+ ++  L
Sbjct: 471 LKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRLTELEADIY-L 529

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L   LF +  L     T+T       VL   K  +P   +V + R  
Sbjct: 530 EAGERFNINSPKQLGQILFEKLELPPIKKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQI 589

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +   +  L++ +  DG                               R H    Q 
Sbjct: 590 AKIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYQQT 617

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395
           +T      + DP+   I         +R   I S  +G      D + +E RVLA ++G+
Sbjct: 618 LTATGRLSSVDPNLQNIPVRLEEGKKIRKAFIPSNKDGYIF-SCDYSQVELRVLAHVSGD 676

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +AF+TG D++  T  + F++  P +VT + R   K +   + Y         ++  
Sbjct: 677 ENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTPNMRRHAKAVNFGIVYGISDY---GLSKN 733

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +        + +     +   +     A E  ++ T             
Sbjct: 734 LGISRKQAKEFIDN------YFEQYPKIKDYMDKEINFAREKGYVET------------- 774

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                   I  +RR +P ++ K           + RS       
Sbjct: 775 ------------------------IMHRRRYLPDIHAKNF---------NVRSFA----- 796

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
             R+ +N+                   +Q  + DI+   M+N  K          +++ V
Sbjct: 797 -ERTAINSP------------------IQGGAADIIKIAMINMQKKLDELNLKSKMLIQV 837

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           HDE++ + P  +      +   +M +       +PL A+
Sbjct: 838 HDELIFDVPADELETIKKVVPEVMQNAVH--LDVPLVAD 874


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 99/611 (16%), Positives = 190/611 (31%), Gaps = 92/611 (15%)

Query: 3   TLFIDF--ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVL 57
            L  D   ET    D    G+   ++   ++ F+F F+D         H          L
Sbjct: 307 KLLADITPETIVAFDTETTGVD--SKSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQIDL 364

Query: 58  KEALENTDVT----IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           K A           ++  N  ++  ++K    L+ P   +  T++LA  +   S++    
Sbjct: 365 KFATWAVGQIYKGCVIGQNLKYDFEIVKNNLGLN-PPANFKDTMILAWLSDPNSSVGMDA 423

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A +L      + ++++              + +           +Y   D  +T + +K
Sbjct: 424 LAKRLYDYDTIKFEDVVK-------------KGQTFGDVPLENAAKYAAEDAWITLKFYK 470

Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             +              E         +   G  ++ A    L    D +   L  E+  
Sbjct: 471 TFQNTLDPNLLALADMHEFPFILTLFDMEQNGIKINEAKMQKLILENDTKLKALTSEIYE 530

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNKKLTPQAIQVFNNRM 281
           L+ G   +   +++L   LF    L  +       +T + VL+      P   ++   R 
Sbjct: 531 LS-GENFNINSVKQLGVILFEHLKLPTKKKTKTGYSTDESVLAELIDAHPVVGKILAYRE 589

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                +      L  A   +G                              SR +    Q
Sbjct: 590 LYKLQSTYCEPLLALAKKDEG------------------------------SRIYTSFLQ 619

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      + +P+   I +       VR C  A EG   V  D + IE R+LA  + + 
Sbjct: 620 TGTSTGRLSSKNPNLQNIPARGSLAKDVRECFEAREGYSFVGLDYSQIELRLLAHFSRDP 679

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF+  ED++  T    F  +        RA+ K +   L Y  G+    K+A+   
Sbjct: 680 ALLEAFKNDEDIHARTAISIFGSS----DGQNRAVAKSINFGLIYGMGSS---KLANQVN 732

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA-WRQKHS 515
           +        +      E +  A    +   E+    A  + F+ T   R +   ++    
Sbjct: 733 ITRAEAKEYI------ERYFKAFATIKEFLESIKISAKNEGFVQTLLGRKRYFDFKSATP 786

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
               ++    +    T+  G A    K   V +        N  ++L     L++     
Sbjct: 787 MQMAMF---EREAVNTVFQGSAADLVKMAMVKV--RANLDKNASMLLQIHDELIFEVKDE 841

Query: 576 NRSYLNTTTRQ 586
                   T++
Sbjct: 842 FAQEFGRATQK 852


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 95/560 (16%), Positives = 203/560 (36%), Gaps = 83/560 (14%)

Query: 7   DFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVMPQ 55
           D E    I  D     +  +  +  ++ F+F +D+         H         D  + +
Sbjct: 308 DLENVKEIAFDTETTSVDSH--NAKIVGFSFCWDEKSSFYVPLAHSYLGAPDMLDKNIAK 365

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            L EA+    +     N  ++  +++  F L+ P  ++  T++LA      +++     A
Sbjct: 366 RLIEAIYTKFII--GQNLKYDFRIVRNNFGLN-PPAKYADTMILAWLMDPDNSVGMDNLA 422

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR--EAWRL---FGEYCKGDVTVTRE 170
            +       + + ++    KGE    +  +N  N+   +AW     + ++C    T   +
Sbjct: 423 KRYFDYDTIKFENVVK---KGENFSSVDVKNAANYASEDAWITLKFYKKFCGILSTELLD 479

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           + K L      E     +   + + G  +D++    +   +  +   L  E+  L+ G  
Sbjct: 480 LAKNL------EFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKILTNEIYDLS-GEN 532

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF   GL  +  T+T     +  LS+  +L     ++   R      +
Sbjct: 533 FNINSTKQLGEVLFEHLGLPAKKKTKTGYSTNESALSAISELHAVVPKILAYRELYKLQS 592

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                 L  A+ +D                               +R      Q  T   
Sbjct: 593 TYTEPLLALALKND------------------------------ENRIFSNFLQTGTSTG 622

Query: 348 TSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              + +P+   I +       +R+C ++ +G   V  D + IE R+LA  + ++  L+AF
Sbjct: 623 RLSSKNPNLQNIPAHGSMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAF 682

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              ED++  T    F  +     K++RA+ K +   L Y  GA    K+++  G++ +  
Sbjct: 683 REDEDIHSRTAISIFGTS----DKEKRAVAKTINFGLIYGMGAS---KLSNELGISRSDA 735

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +      E++  A    +   EN    A ++ +  T   R K+ +   ++   +   
Sbjct: 736 KDYI------EKYFKAFASIKNFMENLKSEAKKNGYTTTLFGR-KRYFDFANATPMQFAM 788

Query: 523 ELHQAFEQTIENGKAIIARK 542
              ++     +   A I +K
Sbjct: 789 YERESVNTKFQGSAADIIKK 808


>gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
 gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
          Length = 915

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 114/654 (17%), Positives = 186/654 (28%), Gaps = 139/654 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A          +D        +    A L +     V H S        A     +P+ 
Sbjct: 363 IALADASGQAAAFDLSQVDPADENALAAWLADPAQPKVVHASK---EAWHALAGRGMPLA 419

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                  LA     P         L +   + E G E      +G   +   D      R
Sbjct: 420 GVTFDTELAAYLCQPDRRAYDLGDLAIGYLRRELGSEDAQVGGQGA-LDLELDGTDEGRR 478

Query: 152 EAWRLFGEYCKGDVTV----TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            A R        DV       R     L  L   E  L  +   +   G   D A   +L
Sbjct: 479 AAVRASAVRDLADVLAGELGDRGADGLLRDL---ELPLVDVLARMERTGIATDGAYLSSL 535

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
            +  D +      E  ++  G   +    ++L+  LF + G+      +T      +S  
Sbjct: 536 EKSFDAQVQDAAAEAYAVI-GREVNLGSPKQLQEVLFDQLGMPKTKKIKTGYTTDAASLT 594

Query: 268 KLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            L  +    F   + A R A+     +  L+ ++  DGR+  T                 
Sbjct: 595 DLFARTQHPFLEHLLAHRDAIRLRQTVEGLLRSVAPDGRIHTT----------------- 637

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVV 378
                           Q I       ++DP+   I         +R   +  +G   L+ 
Sbjct: 638 --------------FQQTIAATGRLSSADPNLQNIPIRTEAGRQIRRAFVVGDGYETLLT 683

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G++  + AF +GEDL+    +R F V   +VT   R+  K M   
Sbjct: 684 ADYSQIEMRIMAHLSGDEGLIDAFRSGEDLHSYVGSRVFGVPTDEVTPAMRSKIKAMSY- 742

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
            G   G        S+ GL+      + +                               
Sbjct: 743 -GLAYGL-------SSYGLSQQLTIEVSEAAG---------------------------- 766

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                       +   +R   + + L    +     G       RR              
Sbjct: 767 ----------LMQDYFARFGGVRDYLTGVVDVARTTGYTQTILGRRRY------------ 804

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
              LP                L +  RQ  RE      L   I Q  + D++   M+   
Sbjct: 805 ---LP---------------DLTSDNRQ-RREAAERMALNAPI-QGSAADLIKVSMLGVD 844

Query: 619 K------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
           +          ++L VHDE+V E    +      L    M +    A   PL  
Sbjct: 845 RELTRRGLASRLLLQVHDELVLEVAAGEREEVEALVREQMGAAGDAATDGPLDV 898


>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 537

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 134/462 (29%), Gaps = 71/462 (15%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGEA 115
            L + ++  V H+  F   +L       I +       +LA     P       +     
Sbjct: 124 LLADPELPKVGHDVKFCEVIL---LRHRIGLVGVSFDTMLASYLLDPEGKNQLHELAERE 180

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L    Q ++E                   R                  DV     +  RL
Sbjct: 181 LGAKMQTLDEVA---------PKRRGQAQRALDEIELGEASSYGAAFADV--ALSLTDRL 229

Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P          L   E  L  +   +   G  VD      L   +  E   L+Q+   +
Sbjct: 230 RPRLRVEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREI 289

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L+  LF E  L  +  T+T   T   VL +  +  P    V  +R  
Sbjct: 290 -VGHDINLASPKQLEAVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHR-- 346

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                                          ++         P    P   R H    Q 
Sbjct: 347 -----------------------------AIAKLKGTYVDALPRLVNPGTGRIHTRWGQA 377

Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +       + DP+   I     +   +R   +A  G  +V AD + IE RVLA ++ +  
Sbjct: 378 VAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPV 437

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF  G+D++V T    F V  A VT + R   K +   + Y  G  A    A    +
Sbjct: 438 LVDAFRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESAL---AKRLDI 494

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
           +    A  +   S       A    R         +     I
Sbjct: 495 SRAEAARFIDACSRICAAATACAALRRSASRRTPPSRGRRRI 536


>gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 945

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 101/609 (16%), Positives = 174/609 (28%), Gaps = 138/609 (22%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
           L +     + H +     V          +        +A     P     +      + 
Sbjct: 432 LADEASPKLLHGAK---AVFHMLAGRGFELRGIEHDTAIAAYLLRPGQRTYELADVYQRH 488

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             +++                  L   +     +      E      +  +EI    E  
Sbjct: 489 LQRQLNPSNN------GSNQLTLLDAGDSQVLVDEAVAILELAGELTSQLQEI-NGFELY 541

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +   +   G  VDVA      +    + T+ ++    L      +    ++
Sbjct: 542 RDLEIPLLSILARMEATGIAVDVATLEEQLETFIDQVTREEEAARELAGDPTLNLSSPKQ 601

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLV 295
           L+T LF   G+     T+T      +  + L  +    F + + A R        L  L+
Sbjct: 602 LQTVLFETFGMPKTKKTKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLI 661

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
            ++ SDGR+  T                                +Q +       ++DP+
Sbjct: 662 RSVGSDGRIHTT-------------------------------FNQTVASTGRLSSTDPN 690

Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +RS  +  EG   L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 691 LQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 750

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               ++ F+V    VT + R   K M   L Y   A    +                   
Sbjct: 751 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQ------------------ 792

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                        +G      K        R   +   L +  E
Sbjct: 793 -----------------------------LGIPAGEAKTIMESYFERFGGVQRYLAEVVE 823

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q  ++G       RR                 LP                LN+  R + R
Sbjct: 824 QARKSGYTETLFGRRRY---------------LPE---------------LNSDNR-VAR 852

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE-TPDTDEF 642
           E      L   I Q  + DI+   M+   +          ++L VHDE+V E  P   E 
Sbjct: 853 ENAERAALNAPI-QGTAADIIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQ 911

Query: 643 NASMLYHLM 651
              +L   M
Sbjct: 912 VQGILEREM 920


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 126/364 (34%), Gaps = 51/364 (14%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E    Y    +  RG  VD       +  ++    +L   +     G   +    ++L  
Sbjct: 490 ELPTVYTLHDMEKRGVRVDRTALEEYSHKLESRIKELHDSIIEYA-GKDFNINSPKQLGP 548

Query: 242 WLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L     T+T       VL   K + P    +   R  +  ++   +      +
Sbjct: 549 VLFEDMALPGGKKTKTGYSTSADVLEKIKNVHPIINDILEYRQLSKLNSTYAIGLGS-FI 607

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGR+ GT                                +Q IT      ++DP+   
Sbjct: 608 SSDGRIHGTF-------------------------------NQTITATGRISSTDPNLQN 636

Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I     +   +R   I  +G   V AD + +E RVLA ++ +     AF+   D++ TT 
Sbjct: 637 IPMRMELGRLIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTA 696

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F V   +VT  QR   K +   + Y   A     ++   G++    +  +      E
Sbjct: 697 SEVFGVPIDEVTPLQRRHAKAVNFGIVYGISAF---GLSEDLGISRKEASDFI------E 747

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
           ++ D     +   +   + A E+ ++ T   R++     K S   +  +   +    +  
Sbjct: 748 KYYDTYKSIKTYLDGQVKFAKENGYVKTMFGRIRPIPELKSSNFMQ-RSFGERVAMNSPI 806

Query: 534 NGKA 537
            G A
Sbjct: 807 QGSA 810


>gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1]
 gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1]
          Length = 850

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/497 (18%), Positives = 154/497 (30%), Gaps = 115/497 (23%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y    + D G  V+  L       + V   +L+Q++   T G   +    ++L
Sbjct: 452 EIEMPLTYSLYRMEDAGIRVERKLLKEYGDRLKVRIAELEQKIYEET-GETFNINSPKQL 510

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF    +     T+T   T   VL       P    + + R     ++         
Sbjct: 511 GEVLFDHMKIPGGKKTKTGYSTAADVLEKLASDWPAVRLILDYRQLTKLNSTY------- 563

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
              +DG          A+  G                R H   +Q IT      +++P+ 
Sbjct: 564 ---ADG---------LAAYIGP-------------DERIHGTFNQTITATGRISSTEPNL 598

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I     +   +R   +  EG   + AD + IE RVLA M+G+Q  + A++  ED++  
Sbjct: 599 QNIPVRMELGREIRKVFVPQEGCVFIDADYSQIELRVLAHMSGDQRLIGAYKQAEDIHAI 658

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T ++ F+V   +VT  QR   K +   + Y            + GL++            
Sbjct: 659 TASQVFHVPLHEVTPLQRRNAKAVNFGIVYG-----ISSFGLSEGLSITRKEASEYIEKY 713

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E +   + F   +     E                                        
Sbjct: 714 FETYPGVKTFLDGLVAEAKELGY------------------------------------- 736

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                A +  +RR VP +   K  N +                  R  +N+  +      
Sbjct: 737 ----AASMFGRRRPVPEL---KSSNFMQRSF------------GERVAMNSPIQ------ 771

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM-LYHL 650
              G   + I  A+ R    +G +        IVL VHDE++ E    +       L   
Sbjct: 772 ---GTAADIIKIAMIR---VDGALRKQGLRSRIVLQVHDELLIEAYREEADQVKELLAEE 825

Query: 651 MTSNPSWAKGLPLKAEG 667
           M      A  L ++A  
Sbjct: 826 MKHAADLAVSLEVEANA 842


>gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
          Length = 877

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 101/630 (16%), Positives = 195/630 (30%), Gaps = 140/630 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114
            L E LEN     +  ++            L+I +      ++LA     P   ++ V  
Sbjct: 358 ELIEWLENDHNNKIVFDAKKTYVAAHR---LEINLQHIDFDVMLASYIIDPSRTIEDVQS 414

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +   +Q     K  IA + KG+  +   D     H  A       CK  ++       +
Sbjct: 415 VVSYYNQNF--VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDILSDHNQ 472

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232
           ++ L++ E  L  +   + + G   DV   + L ++ +  + KLD  +  +    G   +
Sbjct: 473 MDLLNNLELPLARILADMEETGIYTDV---NDLKEMQNELQEKLDNLVSEIYEAAGESFN 529

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF    L +   T+T       VL   +   P    +   R         
Sbjct: 530 INSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQL------- 582

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                                   S+             +    R H   +Q +      
Sbjct: 583 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 617

Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R      S+   ++ AD + IE RVLA M  ++   +AF 
Sbjct: 618 SSIDPNLQNIPIRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFI 677

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T  + F V   QV    R   K +   + Y        +     G+      
Sbjct: 678 HGDDIHAATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKKAK 734

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +       ++  +    +    +  + A  + ++ T                      
Sbjct: 735 AFID------DYLASFPGVKQYMTDIVKDAKANGYVETLL-------------------- 768

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                             +RR +P +  +           + RS         R+ +NT 
Sbjct: 769 -----------------HRRRYIPDITSRNF---------NLRSFA------ERTAMNTP 796

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
                             +Q  + DI+   M+   K          ++L VHDE++ E P
Sbjct: 797 ------------------IQGSAADIIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVP 838

Query: 638 DTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            ++  + S  +  +M +  + A  +PL  +
Sbjct: 839 KSEVQDFSEFVEEIMDNALTLA--VPLLVD 866


>gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411]
 gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411]
          Length = 859

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 111/647 (17%), Positives = 179/647 (27%), Gaps = 158/647 (24%)

Query: 39  DHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           D+ V + D     P   + L E L N   T   H+S           N  + +       
Sbjct: 338 DNVVIVQDLADVAPKDEKALAEWLANPQATKWLHDSK---KAYHTLQNQGLTLDGVEHDT 394

Query: 98  VLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA     P    L       +    ++ EG          E  + + +  K    E   
Sbjct: 395 SLAAYLLRPDVRTLSLADVVQRHVGHELSEGAT------GPERAQAVAELVKALTPEI-- 446

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
                  G   +  ++          E  L  +   +   G  VD A    L+       
Sbjct: 447 ----EAAGQAELYFDL----------EVPLALILAAMEHAGIAVDDAALQELSDDYGARL 492

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
            +       L      +    ++L+  LF    L     T+T      +  +KL  Q+  
Sbjct: 493 NEEIAAARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNH 552

Query: 276 VFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            F   + A R        ++ L+EA+  DGR+  T                         
Sbjct: 553 PFLGHLMAHREYQKMKSTIDGLIEAVGDDGRIHTT------------------------- 587

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEA 386
                  +Q         +SDP+   I         +R+     EG   L+ AD + IE 
Sbjct: 588 ------FNQKGAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLTADYSQIEM 641

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RV+A ++ +   ++A+ +GEDL+    +R F+V   +VT + R   K +   L Y   A 
Sbjct: 642 RVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYGLSAF 701

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +    +                                                   
Sbjct: 702 GLSQQLKISAWEA----------------------------------------------- 714

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K+       R   +   L    E   E G       RR                 LP   
Sbjct: 715 KRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRRY---------------LPELN 759

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620
           S                     RE      L   I Q  + DI+   M+   +       
Sbjct: 760 SSNRV----------------ARENAERAALNAPI-QGTAADIIKLAMLRVDREITRQQL 802

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL--PLKA 665
              ++L VHDE+V E    +      +  L+      A  L  PL  
Sbjct: 803 ASRVLLQVHDELVVEVAPGE---LEQITELVEREMDAAAQLRVPLDV 846


>gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1]
          Length = 926

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/499 (14%), Positives = 158/499 (31%), Gaps = 121/499 (24%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L +    + + G              + V   +L++++     G   +    ++
Sbjct: 527 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEA-GEEFNINSPKQ 585

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   LF +  +     T+T          +L P+   V +                    
Sbjct: 586 LGVILFEKLSMPYGKKTKTGYSTAADVLDRLAPEYPIVSD-------------------- 625

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                    L++   ++             + +  R H   +Q IT      +++P+   
Sbjct: 626 --------ILEYRQLTKLKSTYADGL-VNYIAKDGRIHTSFNQTITATGRLSSTEPNLQN 676

Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I     +   +R   +  EG + + AD + IE RVLA M+G++  ++A+   +D++  T 
Sbjct: 677 IPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITA 736

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           ++ F++   +VT  QR   K +   + Y   +    +      ++    A  ++      
Sbjct: 737 SQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISKKEAAEYIERYF--- 790

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 + + ++    + L    ++  +
Sbjct: 791 --------------------------------------ETYPKIKTFLDGLVAEAKE--K 810

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                +  +RR VP +              S  + + R  G  R  +N+           
Sbjct: 811 GYVTTMFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNSP---------- 845

Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SM 646
                   +Q  + DI+   M+              ++LTVHDE++ ET   +E     +
Sbjct: 846 --------IQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKI 897

Query: 647 LYHLMTSNPSWAKGLPLKA 665
           L   M      A  L + A
Sbjct: 898 LEEEMHGAADLAVTLEIDA 916


>gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469]
 gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469]
          Length = 912

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/510 (18%), Positives = 162/510 (31%), Gaps = 132/510 (25%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           LE  +S E +L  +   +  RG  VD       +  +  +  +    +   T G   +  
Sbjct: 506 LELFTSLEMQLLPVLAAMERRGLYVDPQKLAEQSAQLGEDIAQRVASIHQ-TAGEDFNLD 564

Query: 235 CLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +L   LF    L    L +T      T  +VL    +       V   R RA   + 
Sbjct: 565 SPSQLSHILFDVLKLPTYGLKKTRTGFYSTNAKVLGELAQEYQIVADVLEYRERAKIKST 624

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             L+ L   +  D R                                H  L+Q +T    
Sbjct: 625 Y-LDALPSLIRGDKR-------------------------------IHTTLNQTVTATGR 652

Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +SDP+   I     +   VR+     EG   +  D + IE R+LA ++ ++  + AF 
Sbjct: 653 LSSSDPNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADEHLVAAFN 712

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +G D +  T AR F V   +VT   R+  K +   + Y   A     +A++  ++     
Sbjct: 713 SGADFHAATAARVFGVPVEEVTPALRSRAKAVNFGIVYGQQAF---GLATSLKISRKEAQ 769

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            ++        + DA    R                                        
Sbjct: 770 EMID------RYFDAYPGVRAY-------------------------------------- 785

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           L  +     E G A           + M   K ++     S R L+       R+ +N  
Sbjct: 786 LDDSVRTAHECGYA-----------ITMYGRKRHIREFNQSNRQLIAF---GERTAMNHP 831

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
                              Q  + DI+   M+N  K          ++L +HDE+  E P
Sbjct: 832 M------------------QGSAADIIKIAMINVEKRLRDEGLTSKLILQIHDELDLEVP 873

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           +++ E  ++++   M    +    +PL A+
Sbjct: 874 ESEIETVSTLVKETMEDVVT--LRVPLIAD 901


>gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
 gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
          Length = 896

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/565 (13%), Positives = 179/565 (31%), Gaps = 68/565 (12%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLK----EALENTDVTIVAHNSYFERTVLKACFNLDIP 89
            F    H V   +  +D      +        EN +  +++ +   +   LK      I 
Sbjct: 349 CFSTKLHEVSYINLPNDKNKALEIILQFQAIFENKNKILISADVKNDIIWLKRA---GIK 405

Query: 90  IHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-K 147
           +   I  + +A     P  +      AL+  + K+   K+   +       E   + N  
Sbjct: 406 LKNDIFDIKIAHYVLHPDISHDLGRVALEYLNYKLSGSKKEDQQLTLQFDEEAGTEDNDF 465

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               +      E    D+  T      L   ++ E  L ++   +   G  +D     ++
Sbjct: 466 AEKTDVIFQLHEKLCDDLQQT----GLLALYNNIEMPLVFVLADMEYEGVSIDCNELQSI 521

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRV 262
           +  +      +++E+  L +    +    ++L   LF +  +       +    +T ++V
Sbjct: 522 SSELKERIDIIEKEIYELAH-QEFNISSPKQLGEVLFDKLKIDSNHKKTKSGQYSTSEQV 580

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   +   P   ++                                 + G  +       
Sbjct: 581 LVKLEDEHPIINKIL-------------------------------DYRGLKKLLTTYAE 609

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-ASEGKKL 376
             P    P   + H   +Q         + +P+   I         +R   +  ++    
Sbjct: 610 ALPSFIDPGTGKIHTHFNQAEAATGRLSSLNPNLQNIPIRTEEGRKIRKAFVTGNDDYLF 669

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + +E R++A ++ ++  + AF  G D++  T ++ ++V   +VT + R   K   
Sbjct: 670 FSADYSQVELRLMAHLSQDKELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTAN 729

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A     +A    ++      L+        + D     +   E   E A + 
Sbjct: 730 FGIIYGISA---WGLAERLHISRKEGKELIDG------YFDLYPGVKKYMEESVEKARKK 780

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            F+ T   R ++  R  +SR + +     +        G A    K   + +    +++ 
Sbjct: 781 EFVETIMGR-RRYLRDINSRNAVVRGMAERNAINAPIQGSAADIIKMAMICIQKRIQEEG 839

Query: 557 -NLILMLPSGRSLVYRDVGNNRSYL 580
               +++     L +     +  YL
Sbjct: 840 LMSRMIIQVHDELNF-KCHKSEQYL 863


>gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 888

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 148/491 (30%), Gaps = 127/491 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E     L   +   G   D A    + Q+      +  +E  +   G   +    +
Sbjct: 485 LRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHA-AAGHEFNLGSPK 543

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLKLNTL 294
           +L+  LF E  L     T+T       +   L  Q    + V   R R      + +  L
Sbjct: 544 QLQEVLFGELALPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTVEGL 603

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ + +DGR+  T                                +Q +       ++DP
Sbjct: 604 IKTIAADGRIHTT-------------------------------FNQTVAATGRLSSTDP 632

Query: 355 DPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL
Sbjct: 633 NLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDL 692

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + T  ++ F V P  V  + R   K M   L Y   A    +      +       L   
Sbjct: 693 HTTAASQVFAVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAAEARAL--- 746

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                          R   + + L +A 
Sbjct: 747 -----------------------------------------MDAYFERFGGVRDYLRRAV 765

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           ++    G       RR                 LP                LN+  RQ  
Sbjct: 766 DEARATGYTATLFGRRRY---------------LP---------------DLNSDNRQ-R 794

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642
           RE      L   I Q  + DI+   M+N   A         ++L VHDEIV E    +  
Sbjct: 795 REAAERMALNAPI-QGTAADIVKIAMLNVDSALKDAGLTSRMLLQVHDEIVLEVAPGERA 853

Query: 643 NASMLYHL-MT 652
            A  L    M 
Sbjct: 854 TAEELVRREMA 864


>gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
 gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
          Length = 873

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/522 (15%), Positives = 149/522 (28%), Gaps = 132/522 (25%)

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           L  RF          D    +  +A     E             +      + E  L + 
Sbjct: 426 LTERFSVPSIASGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 481

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  +D             E  ++ QE+  L  G   +    ++L   LF +  
Sbjct: 482 LVVMEKNGIYIDTNKLAETTARFKDELAQVQQEIYDLA-GETFNINSPKQLGVILFEKMN 540

Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+T       VL   +  +P   ++   R                         
Sbjct: 541 LPVIKKTKTGYSTDAEVLDMLRNESPIVEKILAYR------------------------- 575

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                   ++               +  R H   +Q++T      +SDP+   I      
Sbjct: 576 ------SVAKLVSTYLEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 629

Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R+      G   LV AD + IE R+LA ++G++  +KAF  G+D++  T A     
Sbjct: 630 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGK 689

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           A   VT ++R+  K +   + Y         ++   G+      + +             
Sbjct: 690 AQEDVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 737

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                              SR  ++   + +  ++  E GK   
Sbjct: 738 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 762

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598
              R+                 LP   S  + R     R+ +NT                
Sbjct: 763 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 792

Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVC 634
              +Q  + DI+   M    +          ++L VHDE+V 
Sbjct: 793 ---IQGTAADIIKLAMNQVEQKLEEGNFKSRLLLQVHDELVL 831


>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
 gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
          Length = 882

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/503 (16%), Positives = 161/503 (32%), Gaps = 130/503 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L ++   +   G+ VD  +   + + +  E  K+ +E+  L      +    ++L
Sbjct: 483 EVELPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIYELAD-EEFNVNSPKQL 541

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T      +VL   +   P   ++   R    +     +  L  
Sbjct: 542 GKILFEKLDLPVIKKTKTGYSTNAQVLEVLEDKHPIISKIGYYRQLT-KLYSTYVEGLKN 600

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++ DGR+                               H   +Q +T      +++P+ 
Sbjct: 601 VIDEDGRI-------------------------------HSSFNQTVTTTGRLSSTEPNL 629

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         VR   + + E   ++ AD + IE RVLA +A ++  + AF+   D++ 
Sbjct: 630 QNIPIKYEMGREVRKVFVPNYENSIILSADYSQIELRVLAHIADDENLINAFKHHADIHT 689

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT + R   K +   + Y  G  +    A    ++       + T  
Sbjct: 690 KTASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIGDFSL---AKDLKISRKEAKGYIDT-- 744

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               +E   N  ++M E   + A  D+++ T                             
Sbjct: 745 ---YFERYPNVKKYMDETI-DKAKRDMYVTTILN-------------------------- 774

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                      +RR +P +               G           R  +NT        
Sbjct: 775 -----------RRRFIPEI---------------GNKNKIVKALGERLAMNTP------- 801

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET-PDTDEFN 643
                      +Q  + DI+   M+              I+L VHDE++     D  E  
Sbjct: 802 -----------IQGSAADIIKMAMVKVFNVLKERDLKSKIILQVHDELILNVYKDELEEI 850

Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666
            S++   M +       +PL+ +
Sbjct: 851 KSIVKDSMENVLP--LSVPLEVD 871


>gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82]
 gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82]
          Length = 930

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/499 (14%), Positives = 158/499 (31%), Gaps = 121/499 (24%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L +    + + G              + V   +L++++     G   +    ++
Sbjct: 531 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEA-GEEFNINSPKQ 589

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   LF +  +     T+T          +L P+   V +                    
Sbjct: 590 LGVILFEKLSMPYGKKTKTGYSTAADVLDRLAPEYPIVSD-------------------- 629

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                    L++   ++             + +  R H   +Q IT      +++P+   
Sbjct: 630 --------ILEYRQLTKLKSTYADGL-VNYIAKDGRIHTSFNQTITATGRLSSTEPNLQN 680

Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I     +   +R   +  EG + + AD + IE RVLA M+G++  ++A+   +D++  T 
Sbjct: 681 IPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITA 740

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           ++ F++   +VT  QR   K +   + Y   +    +      ++    A  ++      
Sbjct: 741 SQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISKKEAAEYIERYF--- 794

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 + + ++    + L    ++  +
Sbjct: 795 --------------------------------------ETYPKIKTFLDGLVAEAKE--K 814

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                +  +RR VP +              S  + + R  G  R  +N+           
Sbjct: 815 GYVTTMFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNSP---------- 849

Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SM 646
                   +Q  + DI+   M+              ++LTVHDE++ ET   +E     +
Sbjct: 850 --------IQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKI 901

Query: 647 LYHLMTSNPSWAKGLPLKA 665
           L   M      A  L + A
Sbjct: 902 LEEEMHGAADLAVTLEIDA 920


>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
 gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
          Length = 867

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/470 (17%), Positives = 143/470 (30%), Gaps = 123/470 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E+ +  +   +   G  +D A     ++ +  +   L++E+  L      +    +
Sbjct: 466 YEEIERPVAEVLAHMEVTGVRLDTAALAAQSESLAEKLAALEREVRELAGNPNLNLNSRD 525

Query: 238 KLKTWLFLETGLHLEDLTETTCQR----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           +L   LF +  L     T T  +      L   K   P    +                 
Sbjct: 526 QLAELLFEKLELQAGRKTSTGKRSTAVSALEPLKDAHPVVPLILE--------------- 570

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
                           +   ++         P    P   R H   +Q  T      +++
Sbjct: 571 ----------------YRELAKLKSTYLDPLPRLINPHTGRLHTTFNQTATATGRLSSAN 614

Query: 354 PDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           P+   I         +R   +A EG  L+VAD + IE R+LA + GE+  ++ F  GED+
Sbjct: 615 PNLQNIPVRTAVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGEDI 674

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T A+ F V P  VT + R + KV+   + Y   A    +  S               
Sbjct: 675 HRRTAAQIFGVPPEAVTPEGRRVAKVINFGVLYGMSAHRLARELSI-------------- 720

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 + +A+ F R   E +P+       +    +      R              + +
Sbjct: 721 -----PYAEADAFIRSYFEGYPK-------VRAYIDETLAFAR-------------DKGY 755

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
            +T       +  +RR +P +                               N   R+  
Sbjct: 756 VET-------LFGRRRPIPDIRSS----------------------------NRNAREYA 780

Query: 589 REYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVC 634
               Y        +Q    DI+   M          G  ++L VHDE+V 
Sbjct: 781 ERTAY-----NMPIQGTQADIVKLAMVRLLPRLKAHGAKLLLQVHDELVL 825


>gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 918

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/608 (17%), Positives = 176/608 (28%), Gaps = 144/608 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + +   + H++     +++      + +        L      P        AL L  
Sbjct: 404 LGDPERPKIMHDAK---GLMRVFGEHGMSVAGVSMDTALGAYLVKPGRRTFALGALSLEY 460

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
                G+EL+                  +     R      +  + +   +  RL     
Sbjct: 461 L----GRELV-----PAQESDGQLAFGADDESQARTLMVEARTILDLGTALTARLPEVGA 511

Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              L+  E     L   +   G   D A    + +       +  +E  +   G   +  
Sbjct: 512 EGLLTDIELPTSALLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHA-AVGHEFNLG 570

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKL 291
             ++L+  LF E  L     T+T       S   L  Q      V   R R        +
Sbjct: 571 SPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVIMLRHREQAKLRSTV 630

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++++  DGR+  T                                +Q +       +
Sbjct: 631 EGLIKSIAPDGRIHTT-------------------------------FNQTVAATGRLSS 659

Query: 352 SDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +DP+   I         +R   +  EG + L+ AD + IE RV+A ++ ++  + AF +G
Sbjct: 660 TDPNLQNIPVRTDEGRAIRRGFVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAFTSG 719

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+ T     F V PA V  + R   K M   L Y   A    +     G+       L
Sbjct: 720 EDLHRTVAGYVFGVEPAAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEAGEARAL 776

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           + T                                               R   + + LH
Sbjct: 777 MDT--------------------------------------------YFERFGGVRDYLH 792

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +  E+    G       RR                 LP                LN+  R
Sbjct: 793 RVVEEARATGYTATMLGRRRY---------------LP---------------DLNSDNR 822

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639
           Q  RE      L   I Q  + DI+   M+N  +A         ++L VHDEIV E    
Sbjct: 823 Q-RREAAERMALNAPI-QGTAADIVKIAMLNVDRALREAELTSRMLLQVHDEIVLELAPG 880

Query: 640 DEFNASML 647
           +      +
Sbjct: 881 ERAPVEEI 888


>gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4]
          Length = 930

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/499 (14%), Positives = 158/499 (31%), Gaps = 121/499 (24%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L +    + + G              + V   +L++++     G   +    ++
Sbjct: 531 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEA-GEEFNINSPKQ 589

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   LF +  +     T+T          +L P+   V +                    
Sbjct: 590 LGVILFEKLSMPYGKKTKTGYSTAADVLDRLAPEYPIVSD-------------------- 629

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                    L++   ++             + +  R H   +Q IT      +++P+   
Sbjct: 630 --------ILEYRQLTKLKSTYADGL-VNYIAKDGRIHTSFNQTITATGRLSSTEPNLQN 680

Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I     +   +R   +  EG + + AD + IE RVLA M+G++  ++A+   +D++  T 
Sbjct: 681 IPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITA 740

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           ++ F++   +VT  QR   K +   + Y   +    +      ++    A  ++      
Sbjct: 741 SQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISKKEAAEYIERYF--- 794

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 + + ++    + L    ++  +
Sbjct: 795 --------------------------------------ETYPKIKTFLDGLVAEAKE--K 814

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                +  +RR VP +              S  + + R  G  R  +N+           
Sbjct: 815 GYVTTMFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNSP---------- 849

Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SM 646
                   +Q  + DI+   M+              ++LTVHDE++ ET   +E     +
Sbjct: 850 --------IQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKI 901

Query: 647 LYHLMTSNPSWAKGLPLKA 665
           L   M      A  L + A
Sbjct: 902 LEEEMHGAADLAVTLEIDA 920


>gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
          Length = 886

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/515 (15%), Positives = 166/515 (32%), Gaps = 132/515 (25%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++ +  +  E  L  +   +   G  VD +    +          L++++ +   G   
Sbjct: 477 HQQFDLFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEA-GETF 535

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF + GL +   T+T       VL   +K  P    + + R  A   + 
Sbjct: 536 NINSPKQLGVILFEKMGLPVVKKTKTGYSTAVDVLEQLRKDAPIVQTILDYRQIAKIQST 595

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L+++++ D ++                               H    Q +T    
Sbjct: 596 Y-VEGLLKSIHQDNKV-------------------------------HTRYLQTLTQTGR 623

Query: 349 SITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             + DP+   I         +R   + S    ++  +D + IE RVLA ++G+    +AF
Sbjct: 624 LSSVDPNLQNIPVRLAEGRKIRQAFVPSHPDWQMFASDYSQIELRVLAHISGDANMQEAF 683

Query: 403 ETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           +   D++  T  + F + +  +VT D R   K     + Y        +     G++   
Sbjct: 684 KEDRDIHANTAMKIFGLNSADEVTPDMRRQAKATNFGIVYGISDYGLSQ---NIGISRQE 740

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +        + +     +    +  + A E+ ++ T                    
Sbjct: 741 AKRFIDA------YFEQYPGVQQFMVDIVKKAREEGYVETLF------------------ 776

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                               +RR +P ++ K           + RS         R+ +N
Sbjct: 777 -------------------HRRRYLPDIHAKNF---------NLRSFA------ERTAMN 802

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCE 635
           T                   +Q  + DI+   M      +        ++L VHDE++ E
Sbjct: 803 TP------------------IQGSAADIIKVAMILMQQELKKANLQARMLLQVHDELIFE 844

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668
            P  +      ++  +M S    A  +PLK E G+
Sbjct: 845 APTEEIPILQKLVPSVMDSAVKLA--VPLKVESGF 877


>gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6]
          Length = 857

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 111/633 (17%), Positives = 187/633 (29%), Gaps = 148/633 (23%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D         +L+  LE++    V H+S   R +L       + +   +    L      
Sbjct: 324 DGGLGEGALALLRGWLEDSARLKVVHDSKRLRVLLARY---GVSLSGVVADPRLESFLVD 380

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK--- 162
           P+ L        +  +  +  K  + R            +      E             
Sbjct: 381 PTGL--------VPHRIDQLVKAFLQRTVPPAKSVLGSGKKARRFAELAASVTGAWACQR 432

Query: 163 GDVTVTR--EIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            DV VT   +I +RLE +         +  L  +  T+   G  V+      ++      
Sbjct: 433 ADVVVTMWPQIRERLEEVDQLPHLQEVDLPLSEVLATMELAGVRVEPTELEEMSAEFRAT 492

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTP 271
             +L+ E+     G   +    ++L   LF E  L +   T+T   T   VL    +  P
Sbjct: 493 LLQLEAEIWRQA-GREFNVASPKQLGVVLFEELNLPVIKRTKTGYSTAAEVLERLTREHP 551

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A  +  +R  A          ++ A                                P 
Sbjct: 552 IAGLLLQHRKLAKLLTT--YTEVLRAA-----------------------------INPV 580

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H    Q        I+++PD  +          +R   I + G +++ AD + IE 
Sbjct: 581 TGRVHPTFQQTYAATGRLISTNPDIQKTPVRTPEGKRIRRAFIPAPGWRIISADWSQIEL 640

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA  + +   L+AF   ED++  T A  F   P  VT  QR++ K +  A  Y  GA 
Sbjct: 641 RLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDAQRSVAKTVNFATIYGQGAT 700

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
           A        GL                                                 
Sbjct: 701 AL---GQRLGLKRTEA-------------------------------------------- 713

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K    +     + +   L +  E  + +G       RR V             +   S  
Sbjct: 714 KGYISRYFQAYAGVREWLDRTIEGALASGYVETLLGRRRV-------------IPELSSN 760

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---- 622
           S + R VG  R   NT                   +Q  + D+    M+   K       
Sbjct: 761 SAMVRQVGM-RMAANTP------------------IQGSAADLCKLVMLTLAKRFQTRGL 801

Query: 623 --DIVLTVHDEIVCE-TPDTDEFNASMLYHLMT 652
              ++L +HDE+V E  PD  + +  ++   M 
Sbjct: 802 QTRMLLQIHDELVFEAAPDEVDASCQLIREAME 834


>gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046]
          Length = 876

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/648 (16%), Positives = 208/648 (32%), Gaps = 158/648 (24%)

Query: 60  ALENTDVTIV-AHNSYFERTVLKACFNLDIPIHRWICT-LVLARSNGLPSALKAVGEALK 117
           AL + + T+  A ++  +   LKA    +      + +    A  + L   LK V   L 
Sbjct: 335 ALSDGERTVYTAIDNVVDNADLKAWLQDETKKKYIVDSKATQAMLHRLGIELKGVEFDLL 394

Query: 118 LSSQKME------EGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           L+S  ++      +   L   F     +++E +Y +             E+         
Sbjct: 395 LASYILKPSISGDDVATLAKEFGYQDVQSNEAIYGKGAKWVVPGADHVAEHVSRKAVAV- 453

Query: 170 EIFKRLEPLSSK--------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
               +L+PL  +              E  L ++   +   G  V++     +   +  + 
Sbjct: 454 ---WKLQPLLDQKLKENEQFELYKELELPLAHILGKMESEGITVNIDTLRQMGDDLKAKL 510

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQ 272
             ++  +  L  G   +    ++L   LF + GL +   T+T   T   VL   +     
Sbjct: 511 EVMEATIYELA-GEKFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQSEHDI 569

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   R  A   +   +  L++ ++ +                               
Sbjct: 570 VKYILEYRTLAKLQSTY-IEGLIKEVHKED------------------------------ 598

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEA 386
           S+ H    Q +T      +++P+   I         +R   + S+    L  AD + IE 
Sbjct: 599 SKVHTRFQQALTSTGRLSSTNPNLQNIPIRLEEGRKIRKAFVPSKKDWILFAADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGA 445
           RVLA M G++  ++AF+ G D++  T    FN+  P +VT   R   K +   + Y    
Sbjct: 659 RVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKAVNFGIVYGISD 718

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +   +  +     A  +      E +  +    +   +   E A +  F+ T    
Sbjct: 719 YGLSQ---SLDITRKEAAIFI------ENYLQSFPGVKNYMDTSIEEAKKAGFVTTILN- 768

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                               +RR +P +              + 
Sbjct: 769 ------------------------------------RRRYLPDITSSNF---------NL 783

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG 621
           RS         R+ +NT                   +Q  + DI+ + M+       + G
Sbjct: 784 RSFA------ERTAMNTP------------------IQGSAADIIKKAMIDMNARLEQEG 819

Query: 622 YD--IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
               ++L VHDE++ E P  + E    ++  +M +       +PLK E
Sbjct: 820 LQTKLLLQVHDELIFEAPKEEIEILERIVPEVMENAIK--LSVPLKVE 865


>gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 850

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/501 (16%), Positives = 153/501 (30%), Gaps = 130/501 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G+ VD        + ++ +  KL+ ++  +  G   +    ++L  
Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIA-GEWFNINSPKQLSY 511

Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L +   T+T       VL            + + RM                 
Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                 +G LQ                    P   R H    Q  T      +SDP+   
Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +  EG  L+ AD + IE R+LA ++ ++  + AF+   D++  T 
Sbjct: 601 IPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F V  A VT + R+  K +   + Y         +A    ++    A  +       
Sbjct: 661 AEVFGVDIANVTPEMRSQAKAVNFGIVYGISDY---GLARDVKISRKEAAEFIN------ 711

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 +   R  ++   L    +   +
Sbjct: 712 --------------------------------------KYFERYPKVKEYLDNTVKFARD 733

Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           NG  + +  ++R V  +                R+L        R  +N+          
Sbjct: 734 NGFVLTLFNRKRYVKDIKST------------NRNL---RGYAERIAMNSP--------- 769

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DI+   M+   +          I+L VHDE++ E P  ++     
Sbjct: 770 ---------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKR 820

Query: 647 LYHL-MTSNPSWAKGLPLKAE 666
           +    M +    A  +PL  E
Sbjct: 821 IVKREMENAV--ALKVPLVVE 839


>gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
          Length = 850

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/501 (16%), Positives = 153/501 (30%), Gaps = 130/501 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G+ VD        + ++ +  KL+ ++  +  G   +    ++L  
Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIA-GEWFNINSPKQLSY 511

Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L +   T+T       VL            + + RM                 
Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                 +G LQ                    P   R H    Q  T      +SDP+   
Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +  EG  L+ AD + IE R+LA ++ ++  + AF+   D++  T 
Sbjct: 601 IPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F V  A VT + R+  K +   + Y         +A    ++    A  +       
Sbjct: 661 AEVFGVDIANVTPEMRSQAKAVNFGIVYGISDY---GLARDVKISRKEAAEFIN------ 711

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 +   R  ++   L    +   +
Sbjct: 712 --------------------------------------KYFERYPKVKEYLDNTVKFARD 733

Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           NG  + +  ++R V  +                R+L        R  +N+          
Sbjct: 734 NGFVLTLFNRKRYVKDIKST------------NRNL---RGYAERIAMNSP--------- 769

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DI+   M+   +          I+L VHDE++ E P  ++     
Sbjct: 770 ---------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKR 820

Query: 647 LYHL-MTSNPSWAKGLPLKAE 666
           +    M +    A  +PL  E
Sbjct: 821 IVKREMENAV--ALKVPLVVE 839


>gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
 gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
          Length = 875

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/530 (15%), Positives = 164/530 (30%), Gaps = 132/530 (24%)

Query: 154 WRLFGEYCKGDVT-VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           +  +  +   D+     E  + L      E  L +    +   G   +       +  + 
Sbjct: 450 YEAYTAFKGSDLLYKKLEETQMLHLFEDIEMPLVFTLYDMERNGIRAEGEALKVYSSQLG 509

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKL 269
              ++L++E+  +  G   +    ++L   LF +  L     T++       VL      
Sbjct: 510 GRISELEKEIYEMA-GESFNINSPKQLGVILFEKLLLPGSKKTKSGYSTAASVLDKLAPD 568

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P   +V   R      +    + LV  +  DG                           
Sbjct: 569 YPIVSKVLEYRQLTKLKSTYA-DGLVNYIEEDG--------------------------- 600

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384
               R H + +Q IT      +++P+   I     +   +R   +  +G   V AD + I
Sbjct: 601 ----RIHSKFNQTITATGRISSTEPNLQNIPVRVELGRLIRKVFVPEDGYIFVDADYSQI 656

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA  +G+   ++A+   +D++  T ++ F++   +VT  QR   K +   + Y   
Sbjct: 657 ELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVTPLQRRNAKAVNFGIVYGIS 716

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           +    +      +     A  ++                                     
Sbjct: 717 SFGLSE---DLSIGRKEAAKYIE------------------------------------- 736

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                + + +  +    ++     ++        +  +RR VP +              S
Sbjct: 737 ----DYFKTYPGIKTFLDDTVAHAKEM--GYVVTLFGRRRPVPEL--------------S 776

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621
             + + R  G  R  +N                    +Q  + DI+   M+   +     
Sbjct: 777 SSNFMQRSFGE-RVAMNAP------------------IQGTAADIMKIAMIGVNRRLKEQ 817

Query: 622 ---YDIVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                +VL VHDE++ E   P+  E    +L   M    S    +PL+ +
Sbjct: 818 NLKSRLVLQVHDELLIEAYRPELPEVE-KILREEMEQAAS--LDVPLEID 864


>gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
 gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
          Length = 932

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 87/484 (17%), Positives = 149/484 (30%), Gaps = 120/484 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L  +   +   G   D      L +    + T++  + + +  G   +    +
Sbjct: 529 LRDVELPLVTVLAGMERAGIAADTDHLLDLQKHYGAQVTEVAAQAQEI-VGRPFNLSSPK 587

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L+  LF E GL      +T       +   L+ QA       +   R            
Sbjct: 588 QLQVILFDELGLPKTKKIKTGYTTDADALAWLSTQADHPLLAVLLRHRDVA--------- 638

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                RLR  +              + P   +    R H   +Q+I       ++DP+  
Sbjct: 639 -----RLRTVVD------------SLIPM--IDDAGRVHTTFNQMIAATGRLSSADPNLQ 679

Query: 358 QII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   +   G + L+ AD + IE R++A ++G++  + AF +GEDL+  
Sbjct: 680 NIPVRTAEGRQIRRAFVVGAGYESLLTADYSQIEMRIMAHLSGDKGLIGAFASGEDLHTF 739

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             A++F +   +V  + R   K M   L Y   A     +A   G+              
Sbjct: 740 VAAQAFGIPVDEVDPELRRRIKAMSYGLAYGLSAF---GLAGQLGI-------------- 782

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                            HPE A E                   +R   + + L    E+ 
Sbjct: 783 -----------------HPEEARE-------------QMEAYFARFGGVRDFLRGVVERA 812

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
             +G       RR                 LP                  T+     R+ 
Sbjct: 813 RADGYTETILGRRRY---------------LPDL----------------TSDNTQRRQM 841

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNAS 645
                L   I Q  + DI+   M+   +      A   ++L VHDE+V E    +  +  
Sbjct: 842 AERMALNAPI-QGSAADIIKIAMLGVDRKLREHGARSRLLLQVHDELVLEIAPGERADVE 900

Query: 646 MLYH 649
            L  
Sbjct: 901 ALVR 904


>gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 871

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/503 (15%), Positives = 153/503 (30%), Gaps = 131/503 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L +    +   G  V+          +  +  +L+ ++  +  G   +    ++L
Sbjct: 473 EIEMPLVFTLYEMESAGVKVEAEALKLYGDQLGEQIIQLEHQIYEMA-GEEFNINSPKQL 531

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  +     T+T   T   VL    +  P   ++   R  A   +         
Sbjct: 532 GVILFEKLNMPHAKKTKTGYSTAADVLEKLAEEYPIVSKILEYRQLAKLKSTY------- 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                           A     + G            R H + +Q +T      +++P+ 
Sbjct: 585 ----------------ADGLAVFIGDD---------GRIHGKFNQTVTATGRLSSTEPNL 619

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I     +   +R   +  E    V AD + IE RVLA  +G++  +KA+    D++  
Sbjct: 620 QNIPVRMELGRMIRKVFVPKEDCVFVDADYSQIELRVLAHCSGDEQLIKAYREATDIHRM 679

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T ++ F+    +VT  QR   K +   + Y   +     ++    +     A  ++    
Sbjct: 680 TASQVFHTPFDEVTDLQRRNAKAVNFGIVYGISSF---GLSMDLSITRKEAAEYIE--HY 734

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E +   + F                                          L  + E  
Sbjct: 735 FETYPGVKKF------------------------------------------LDDSVENA 752

Query: 532 IENGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            E G A+ +  +RR VP +   K  N +                  R  +N         
Sbjct: 753 KEKGYAVTLFGRRRPVPEL---KSSNFMQRNF------------GERVAMNAP------- 790

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M++  K          ++L VHDE++ E   ++    
Sbjct: 791 -----------IQGTAADIMKIAMIDVHKELKKRNMKSRMILQVHDELLIEAECSEVDEV 839

Query: 645 SMLYH-LMTSNPSWAKGLPLKAE 666
             +    M +       +PL  +
Sbjct: 840 KEILRDKMENAVK--LSVPLIVD 860


>gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 920

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 152/476 (31%), Gaps = 114/476 (23%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y    +   G  V+ A        + V    L+QE+   T G   +    ++L
Sbjct: 522 EIEMPLIYSLYHMEQEGVKVERAELEEYGNRLKVRIVDLEQEIYRDT-GKEFNINSPKQL 580

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  +     T+T   T   VL       P   ++ + R     ++      L  
Sbjct: 581 GEILFEDMKMPGGKKTKTGYSTAADVLDKLAPDYPVVQKILDYRQLTKLNSTYA-EGLAA 639

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  DGR+ G                               + +Q IT      +++P+ 
Sbjct: 640 YIGEDGRIHG-------------------------------KFNQTITATGRISSTEPNL 668

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I     +   +R   +  EG   V AD + IE R+LA M+G++  ++A+ + +D++  
Sbjct: 669 QNIPVRMELGREIRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAI 728

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F+V   +VT  QR   K +   + Y   A    +      ++       +  N  
Sbjct: 729 TASEVFHVPLGEVTPLQRRNAKAVNFGIVYGISAFGLSE---DLSISRKEAVEYI--NKY 783

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E +   + F   +     E                                        
Sbjct: 784 FETYPGVKIFLDGLVSQGKEQGYV------------------------------------ 807

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +  +RR +P +   K  N +                  R  +N+  +    + 
Sbjct: 808 -----TTLYGRRRPIPEL---KSANFMQRQF------------GERVAMNSPIQGSAADI 847

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
               K+      AV R++ A  + +       IVL +HDE++ ET + +      +
Sbjct: 848 M---KIAMI---AVDRELRARNLKS------RIVLQIHDELLIETAEDEIGTVKEI 891


>gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 904

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 101/609 (16%), Positives = 174/609 (28%), Gaps = 138/609 (22%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
           L +     + H +     V          +        +A     P     +      + 
Sbjct: 391 LADEASPKLLHGAK---AVFHMLAGRGFELRGIEHDTAIAAYLLRPGQRTYELADVYQRH 447

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             +++                  L   +     +      E      +  +EI    E  
Sbjct: 448 LQRQLNPSNN------GSNQLTLLDAGDSQVLVDEAVAILELAGELTSQLQEI-NGFELY 500

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +   +   G  VDVA      +    + T+ ++    L      +    ++
Sbjct: 501 RDLEIPLLSILARMEATGIAVDVATLEEQLETFIDQVTREEEAARELAGDPTLNLSSPKQ 560

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLV 295
           L+T LF   G+     T+T      +  + L  +    F + + A R        L  L+
Sbjct: 561 LQTVLFETFGMPKTKKTKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLI 620

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
            ++ SDGR+  T                                +Q +       ++DP+
Sbjct: 621 RSVGSDGRIHTT-------------------------------FNQTVASTGRLSSTDPN 649

Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +RS  +  EG   L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 650 LQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 709

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               ++ F+V    VT + R   K M   L Y   A    +                   
Sbjct: 710 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQ------------------ 751

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                        +G      K        R   +   L +  E
Sbjct: 752 -----------------------------LGIPAGEAKTIMESYFERFGGVQRYLAEVVE 782

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q  ++G       RR                 LP                LN+  R + R
Sbjct: 783 QARKSGYTETLFGRRRY---------------LPE---------------LNSDNR-VAR 811

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE-TPDTDEF 642
           E      L   I Q  + DI+   M+   +          ++L VHDE+V E  P   E 
Sbjct: 812 ENAERAALNAPI-QGTAADIIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQ 870

Query: 643 NASMLYHLM 651
              +L   M
Sbjct: 871 VQGILEREM 879


>gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 108/648 (16%), Positives = 198/648 (30%), Gaps = 153/648 (23%)

Query: 27  DVCVILFAFGFDDHP-VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
           D+  + FA   DD   V++ +   D    + L   L +   T   H +      L   + 
Sbjct: 343 DIDTLAFATTSDDAACVDVPELTPDDE--KALAAWLTDPQATKAMHGAKGPLLAL---WA 397

Query: 86  LDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             + +        LA     P   +      AL+        G+EL     + +  E + 
Sbjct: 398 RQLDLAGLDSDTQLAAYLLRPDQRSYDLDDLALRHL------GREL-----RVQDSEQVN 446

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDR 195
                   E         +          +   L+       L S E  L  +   +  R
Sbjct: 447 QETLDFGSERQPAETAMLRARAIAELAGVLDGELDDTSQRGLLHSLEMPLERVLARMEQR 506

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +D+ +   L    D  R +  ++      G   +    ++L+  LF +  +     T
Sbjct: 507 GVAIDMDVLDQLRSEYDA-RVQAAEQAAFAAIGTQINLGSPKQLQAVLFDQLDMPKTKRT 565

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312
           ++       + +KL  +    F   + A R  +     ++TL+++ + DGR+  T     
Sbjct: 566 KSGYTTDADALEKLYQKTRHPFLEHLLAYRDTIKLRQIIDTLIKSTSDDGRIHTT----- 620

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
                                       Q +       ++DP+   I         +R  
Sbjct: 621 --------------------------YVQTVAGTGRLSSTDPNLQNIPIRTPEGRRIRDA 654

Query: 368 VIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            +  EG + L+ AD + IE RV+A  +G++  + AF +G D +  T +  F+V   QVT 
Sbjct: 655 FVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHSMTASHVFDVPVEQVTP 714

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            QR+  K M   L Y   A     ++S   +++     L                     
Sbjct: 715 AQRSSVKQMNYGLAYGLSAY---GLSSRLNVSVPEARAL--------------------- 750

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                                    Q       + + L    E+  + G       RR  
Sbjct: 751 -----------------------MDQYFQTFGPVRDYLDSLVEKARKQGYTETMLGRRRY 787

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                          LP                LN++ RQ  R+      L   + Q  +
Sbjct: 788 ---------------LP---------------DLNSSNRQ-RRQMAERMALNAPM-QGTA 815

Query: 607 RDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY 648
            DI+   M+   +          ++L +HDE+V E    +      + 
Sbjct: 816 ADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEVAAGERDRVQQIV 863


>gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583]
 gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583]
          Length = 880

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 97/654 (14%), Positives = 197/654 (30%), Gaps = 154/654 (23%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--------------------LKEALENTDVTI 68
            ++     + +   E++  +    + +                     +K  L   D+  
Sbjct: 332 QILGLGLAWGEEETEVYSILPQGFVTEDYLIEKTQEFCQQGKLIASLNIKAMLRYMDLK- 390

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEG 126
            +HN  F+   L A   L+     +    +     G   P+    +G+ L       E+ 
Sbjct: 391 -SHNDMFD-AGLAAYL-LNPLKSEYTYDDIAKEFLGEMFPAKEDLLGK-LSYIKAANEKE 446

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
           +EL    C    +  L  R             E                   +  E  L 
Sbjct: 447 EELAKSVC-YMAYTALKSRTSLLEALEKENMKEL-----------------YTDMEMPLL 488

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           +    +   G  V+        + + V    L++E+     G   +    ++L   LF +
Sbjct: 489 FTLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQA-GEEFNINSPKQLGVILFEK 547

Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
             L     T+T         +KL P+   V +                            
Sbjct: 548 LELPGGKKTKTGYSTAADVLEKLAPEHKLVAD---------------------------- 579

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361
            L++   ++             +    R H   +Q IT      +++P+   I     + 
Sbjct: 580 ILEYRQLTKLKSTYADGL-ANYIAEDGRIHSTFNQTITATGRISSTEPNLQNIPVRTELG 638

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   I  +G   + AD + IE RVLA M+G++  ++A++  +D++  T ++ F++  
Sbjct: 639 RLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPF 698

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT  QR   K +   + Y   +    +      ++    A  +++    + +   + F
Sbjct: 699 DEVTPLQRRNAKAVNFGIVYGISSFGLSQ---DLSISRKEAAQYIES--YFQTYPKIKGF 753

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
              + E   E                                             + +  
Sbjct: 754 LDGLVEEAKEKGYV-----------------------------------------STLFH 772

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           +RR VP +   K  N +                  R  +N+  +         G   + I
Sbjct: 773 RRRPVPEL---KSSNFMQRSF------------GERVAMNSPIQ---------GTAADII 808

Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654
             A+ R       +        +VL VHDE++ ET   + E  +++L   M   
Sbjct: 809 KIAMIR---VNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEA 859


>gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1]
 gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 866

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 94/551 (17%), Positives = 177/551 (32%), Gaps = 69/551 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+   +       + S  +   L+            I   V A    L   L + G  +
Sbjct: 353 LKDFFADKATQFFGYRSKRDNHALRN---------SGIDVHVTADLV-LAEHLVSGGAKI 402

Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
              +  ME G  +    F K      L  ++ P     +  FG +    + +   +F +L
Sbjct: 403 SFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPAQY--FGMFASKLLAIKNYLFVKL 460

Query: 176 EP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E         + EQ L  +   +   G  +D      L++ +  E  +  QE+  LT G 
Sbjct: 461 EEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLT-GC 519

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             + +  ++L   L+   G+   D  ++T   VL + +       ++             
Sbjct: 520 EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEVLEALEDRHEIIPKIL------------ 567

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                               F    +         P Q      R H   +Q+ T     
Sbjct: 568 -------------------MFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRL 608

Query: 350 ITSDPDPLQII-----SDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
              DP+   I         +R    +  +    + AD + IE R LA ++ ++   +AF 
Sbjct: 609 SCQDPNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFN 668

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +GED++  T ++ FNV   QVTK +R   K +   L Y   A     ++    ++++   
Sbjct: 669 SGEDIHAFTASQVFNVPLEQVTKQERYQAKAVNFGLVYGQQAY---GLSKILKISVSEAQ 725

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L+    A   +  A  F     E   ++      +G   ER+   W +           
Sbjct: 726 GLMDAYFAR--YPLAAEFITQTIEQASKNQKVTTMLGR--ERILSDW-ESSPGARAASGR 780

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNT 582
           L      T   G A    K   + +    + +     L+L     L++         + +
Sbjct: 781 L---AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRS 837

Query: 583 TTRQLTREYTY 593
             ++       
Sbjct: 838 LVQEKMESAME 848



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649
                +Q  + +++   M+N +           ++L +HDE++ E P  + E   S++  
Sbjct: 782 AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQE 841

Query: 650 LMT 652
            M 
Sbjct: 842 KME 844


>gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 895

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 87/498 (17%), Positives = 153/498 (30%), Gaps = 131/498 (26%)

Query: 170 EIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            + +R   +  + E  L  +   +   G  +D      L   +  + + L     +   G
Sbjct: 483 ALDERTRAVLDEIELPLVAVLAEMELNGVAIDAVALTRLRDRLTGKASDLAARAYAEI-G 541

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +    ++L+  LF E G+     T+T      +S   L  ++   F   +   R A 
Sbjct: 542 HEINLGSPKQLQQVLFEELGMPKTRSTKTGYSTDAASLADLQEKSPHPFLGLLLQHRDAT 601

Query: 289 LK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                + TL  ++  DGR+  T                                DQ  T 
Sbjct: 602 KLKQIVETLERSVTGDGRIHTT-------------------------------YDQTGTS 630

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                ++DP+   I         +RS  +   E + L+ AD + IE R++A ++ +   +
Sbjct: 631 TGRISSNDPNLQNIPIRTEEGREIRSSFVSGGEDETLLTADYSQIEMRIMAHLSDDPGLI 690

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GEDL+    +R F V P +VT   R   K M   L Y   A     ++    +  
Sbjct: 691 EAFNAGEDLHRFVGSRVFGVPPEEVTPLMRTKVKAMSYGLAYGLSAF---GLSKQLRIET 747

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +    L+                                                 R   
Sbjct: 748 SEARELMN--------------------------------------------GYFERFGA 763

Query: 520 LWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           + + L    EQ   +G  + I  R+R    L                             
Sbjct: 764 VRDYLRNVVEQARLDGFTETIFGRRRPFADL----------------------------- 794

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
               T+T ++ RE      L   I Q  + DI+   M+         + G  ++L VHDE
Sbjct: 795 ----TSTNRVLRENAERQALNAPI-QGSAADIMKIAMLGIAGDMSDQRLGSRMLLQVHDE 849

Query: 632 IVCETPDTDEFNASMLYH 649
           ++ E    +      +  
Sbjct: 850 LIFEVAPGEGDALETIVR 867


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 90/625 (14%), Positives = 195/625 (31%), Gaps = 156/625 (24%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKM 123
            ++  N  F+  +LK      IP +      ++A     P    +L  + E         
Sbjct: 412 KLIGQNYKFDYKILKKHEFNVIPPY---FDTMIAAYVIDPNTKVSLDFLAE--------- 459

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------ 177
              K L+    K   +E +  +N         +   Y   D  +T  +FK          
Sbjct: 460 ---KYLMH---KNIRYEEIVAQNGTLKDIPLEMVSNYAAEDADITFRLFKIFTKKLKEDN 513

Query: 178 ----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
               ++  E     +   + + G  +D          +D E   ++ E+   + G+  + 
Sbjct: 514 LENLMTDIEMPFSNVITEMEENGIYLDKDYLRQYGYELDKELKLIENEIIK-SIGIEFNL 572

Query: 234 RCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
              ++L T LF    L L      ++T  +VL + K+      ++   R  A        
Sbjct: 573 NSTKQLHTVLFERLNLVLPQNVKQDSTDIKVLETIKEQHESIPKLIQYRQIA-------- 624

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                                  +               + ++ H    Q  T      +
Sbjct: 625 -----------------------KLKNTYTDNLIEFVNEKTNKIHTNFIQTKTATGRISS 661

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           + P+   I         +R      +G   + AD + IE  +LA ++ ++  ++AF+  +
Sbjct: 662 TSPNLQNIPIKDEKGRKIREAFKPEKGNIFISADYSQIELVILAHLSEDESLIEAFKNKK 721

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D+++ T ++ F V   +VT   R I K +   + Y+  A    +++    +        +
Sbjct: 722 DIHIKTASQLFKVDEEKVTSSMRRIAKSINFGIIYRMSAF---RLSKELSIKREEAQKFI 778

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                 + + +  +  +   +N  +   ++ +  T                         
Sbjct: 779 ------DSYFNLYSKIKTFIQNQIDFVRKNGYSET------------------------- 807

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                       + ++RR +  +  +                     G  R  +N+T   
Sbjct: 808 ------------LLKRRRYIKEINSQNYS---------------ERSGAERIAINST--- 837

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640
                          +Q  + DI+   M+              I+L VHDE++ E+P+ +
Sbjct: 838 ---------------IQGSASDIMKIAMIKVYNELKSKNLKSKILLQVHDEMLIESPEQE 882

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKA 665
               + +   M  N ++   +PLK 
Sbjct: 883 CEEVNKIIKTMMEN-AYPLKIPLKV 906


>gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 857

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 93/619 (15%), Positives = 179/619 (28%), Gaps = 138/619 (22%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
             ALE+++V + A      +  L A    D+P++       L         L  + E   
Sbjct: 356 LTALEDSEVVVTADGKSLYKAALCAGIG-DLPVYDVTLAAYLLDPTRTAYGLTYLSEVFG 414

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            +  +       +    + ET               + L+G          + +    E 
Sbjct: 415 RTLNE-------VKGEAQNETAN--------EAAFVYSLYGPV--QQALEEKGLSSLFE- 456

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
             + E  L      +   G+ V+      +   +  E   L+ E+  L  G   +    +
Sbjct: 457 --TIESPLERTLAVMELNGFTVNRDRLEEMKADLSREADALETEIYDLA-GESFNINSTK 513

Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF + GL +   T+T       VL    + +    ++                  
Sbjct: 514 QLGVILFEKMGLPVIKKTKTGYSTDSSVLEELAEQSEIVPKILK---------------- 557

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                          F    +          P    +  R +   +Q++T      +SDP
Sbjct: 558 ---------------FRALKKLISTYLDGLEPLIDEKTERVYTSFNQMVTATGRLSSSDP 602

Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +RS  +  EG   LV  D + IE R+LA ++ +   +  F+  +D+
Sbjct: 603 NLQNIPIRTEQGRKIRSFFVPGEGYDYLVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDI 662

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T +  F V   +VT + R+  K +   + Y         ++   G+  N     +++
Sbjct: 663 HRRTASEVFGVPFDEVTGELRSHAKAVNFGIIYGISDF---GLSRNLGITRNRAKEYIES 719

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             A        +          E A       T   R+ +   +  S+     +   +  
Sbjct: 720 YFARY------STIHDYMNGLVEEARRTGESRTMFGRL-RTLPEISSKNFMRRSFAERTA 772

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
             T   G A                                       +  +N   ++L 
Sbjct: 773 MNTPIQGSA-----------------------------------ADIIKLAMNAVQKKLE 797

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM-L 647
                                L   M+          + VHDE+V E P  ++      L
Sbjct: 798 ALN------------------LHSRML----------VQVHDELVLEVPAQEKETIEKLL 829

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M    +    +PL A+
Sbjct: 830 KETMEEVVT--LSVPLIAD 846


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 96/663 (14%), Positives = 211/663 (31%), Gaps = 162/663 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60
           +D E+    D    G+    ++  ++ F+F  +++        H        +   L+ A
Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQI--SLQSA 368

Query: 61  LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  +V      + HN  ++  +++  F L++P  ++  T++LA      S +     AL
Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSSRVNMDDLAL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+              + +           +Y   D  +T   +    
Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLDFL 474

Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LE PL       E +   +   + + G  ++      L +  + E   L +E+ +L  
Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLNTNALEILMKKFENEIKNLSEEIYTLCE 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL+      P   ++ + R   +
Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVITKILDYR-ELA 592

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                             + SR +    Q  T
Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC +A +G   +  D + IE R+LA  + ++  L
Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++  T    F     +   + R++ K +   L Y  G   ++ ++    +  
Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +                                              K    +     + 
Sbjct: 737 HLA--------------------------------------------KSYIEKYFENFTS 752

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +         +  +NG                        +   SGR          + Y
Sbjct: 753 IKKYFETVKNEAKQNG-----------------------FITTLSGR----------KRY 779

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + D++   M+   K   +   ++L +HDE++ E 
Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839

Query: 637 PDT 639
            D 
Sbjct: 840 KDD 842


>gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
 gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
          Length = 887

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 107/647 (16%), Positives = 201/647 (31%), Gaps = 159/647 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+  LE+  +     +       L     L I +H     ++LA                
Sbjct: 367 LRHLLEDEQIKKNVFDLKRTMVGLHR---LGIHVHGQDYDMLLASYLINNEN-------- 415

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RL 175
             +S  + E   L   +      E        +  +       +    V     + +  L
Sbjct: 416 --NSNDLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDDDEELFNHLASKVNAIENLKQPLL 473

Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           E L   EQ+  +         +   +   G  V+ +    L     V   +L+ ++    
Sbjct: 474 EKLKEHEQDDLFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKIYQQA 533

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF +  L +   T+T       VL   K  +P   ++ + R  A
Sbjct: 534 -GERFNLNSPKQLGHILFEKLNLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIA 592

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
              +   +  L++ +  DG                               R H    Q +
Sbjct: 593 KIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYLQTL 620

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIA--SEGKKLVVADLAGIEARVLAWMAGEQ 396
           T      + DP+   I         +R   +    +G      D + +E RVLA ++G+Q
Sbjct: 621 TATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPTNPDGYIF-SCDYSQVELRVLAHVSGDQ 679

Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +AF+TG D++  T  R F++  P +VT   R   K +   + Y         ++   
Sbjct: 680 NMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNL 736

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +                    E +P                         
Sbjct: 737 GISRKRAQEFIDN----------------YFEQYP------------------------- 755

Query: 516 RVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              ++   + +A +   E G A  I  +RR +P ++ KK          + RS       
Sbjct: 756 ---QIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKF---------TVRSFA----- 798

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
             R+ +N+                   +Q  + DI+   M+N  K          +V+ V
Sbjct: 799 -ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQV 839

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
           HDE++ + P  +      +   +M S       +PL A+ G+    Y
Sbjct: 840 HDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603]
 gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603]
          Length = 838

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 85/545 (15%), Positives = 179/545 (32%), Gaps = 72/545 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112
              KE L N ++     ++   R ++   +   + I      L++A     P+       
Sbjct: 317 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 373

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDV----T 166
             A    +  ++  +E+  +  K         R  P             +   DV     
Sbjct: 374 AVAKMKETHAVKSDEEVYGKGAK---------RAVPEQEVVAEHVARKVHVLYDVKQIFE 424

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              E  ++ E  +  E  L  +   +  +G  VD      + + +     +++QE+  L 
Sbjct: 425 EELEKNEQYELFTELELPLARVLADMEVKGVTVDTERLRNMGEELAGRLKEMEQEIYELA 484

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF    L +   T+T       VL           ++ + R   
Sbjct: 485 -GTEFNINSPKQLGVILFENLNLPVLKKTKTGYSTSADVLDKLMDHHAIIPKILHYRQL- 542

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L++ ++ D                               S+ H   +Q++
Sbjct: 543 GKLNSTYIEGLLKVVHDD------------------------------SSKIHTRFNQVL 572

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQW 397
           T      +++P+   I         +R   I SE G  +  AD + IE RVLA +A ++ 
Sbjct: 573 TQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEEGWIMYAADYSQIELRVLAHIAKDEG 632

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF+   D++  T    F V   +VT + R   K +   + Y        +     G+
Sbjct: 633 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGI 689

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                   +      E + ++    +    +  + A +  ++ T   R ++   +  SR 
Sbjct: 690 TRKAAGEFI------ERYLESFPGVQEYMADIVKDAKQKGYVSTLLNR-RRYIPEITSRN 742

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576
             L +   +    T   G A    K+  + +    +++     L+L     L++      
Sbjct: 743 FNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEE 802

Query: 577 RSYLN 581
              L 
Sbjct: 803 VEKLE 807


>gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 880

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 96/606 (15%), Positives = 187/606 (30%), Gaps = 134/606 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGE 114
           +K  L   D+   +HN  F+   L A   L+     +    +     G   P+    +G+
Sbjct: 380 IKAMLRYMDLK--SHNDMFD-AGLAAYL-LNPLKSEYTYDDIAKEFLGEMFPAKEDLLGK 435

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L       E+ +EL    C    +  L  R             E               
Sbjct: 436 -LSYIKAANEKEEELAKSVC-YMAYTALKSRTSLLEALEKENMKEL-------------- 479

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
               +  E  L +    +   G  V+        + + V    L++E+     G   +  
Sbjct: 480 ---YTDMEMPLLFTLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQA-GEEFNIN 535

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             ++L   LF +  L     T+T         +KL P+   V +                
Sbjct: 536 SPKQLGVILFEKLELPGGKKTKTGYSTAADVLEKLAPEHKLVAD---------------- 579

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                        L++   ++             +    R H   +Q IT      +++P
Sbjct: 580 ------------ILEYRQLTKLKSTYADGL-ANYIAEDGRIHSTFNQTITATGRISSTEP 626

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I     +   +R   I  +G   + AD + IE RVLA M+G++  ++A++  +D++
Sbjct: 627 NLQNIPVRTELGRLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIH 686

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T ++ F++   +VT  QR   K +   + Y   +    +      ++    A  +++ 
Sbjct: 687 RITASQVFHIPFDEVTPLQRRNAKAVNFGIVYGISSFGLSQ---DLSISRKEAAQYIES- 742

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              + +   + F   + E   E                                      
Sbjct: 743 -YFQTYPKIKGFLDGLVEEAKEKGYV---------------------------------- 767

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                  + +  +RR VP +   K  N +                  R  +N+  +    
Sbjct: 768 -------STLFHRRRPVPEL---KSSNFMQRSF------------GERVAMNSPIQ---- 801

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLY 648
                G   + I  A+ R       +        +VL VHDE++ ET   + E  +++L 
Sbjct: 802 -----GTAADIIKIAMIR---VNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILE 853

Query: 649 HLMTSN 654
             M   
Sbjct: 854 QEMKEA 859


>gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
 gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
          Length = 859

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 97/577 (16%), Positives = 156/577 (27%), Gaps = 140/577 (24%)

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L    +E    L A   + +            H                   E+ + L
Sbjct: 383 QGLKLDGVEHDTSLAAYLLRPDVRTLGLADVVQRHVGHELSENATGPERAQAVAELVRAL 442

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P              E  L  +   +   G  VD A    L+        +       L
Sbjct: 443 TPEIEAAGQAELYFDLEVPLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAAREL 502

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
                 +    ++L+  LF    L     T+T      +  +KL  Q+   F   + A R
Sbjct: 503 AGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHR 562

Query: 286 SAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                   ++ L+EA+  DGR+  T                                +Q 
Sbjct: 563 EYQKMKSTIDGLIEAVGDDGRIHTT-------------------------------FNQK 591

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396
                   +SDP+   I         +R+     EG   L+ AD + IE RV+A ++ + 
Sbjct: 592 GAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDA 651

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++A+ +GEDL+    +R F+V   +VT + R   K +   L Y   A    +      
Sbjct: 652 GLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYGLSAFGLSQ---QLK 708

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                                K+       R
Sbjct: 709 ISAGEA--------------------------------------------KRIMDNYFER 724

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              +   L    E   E G       RR                 LP   S         
Sbjct: 725 FGGVKRYLDHVVEVAKETGYTETLYGRRRY---------------LPELNSSNRV----- 764

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
                       RE      L   I Q  + DI+   M+   +          ++L VHD
Sbjct: 765 -----------ARENAERAALNAPI-QGTAADIIKLAMLRVDREITRQQLASRVLLQVHD 812

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGL--PLKA 665
           E+V E    +      +  L+      A  L  PL  
Sbjct: 813 ELVVEVAPGE---LEQITELVEREMDAAAQLRVPLDV 846


>gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
 gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
          Length = 1040

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 93/515 (18%), Positives = 162/515 (31%), Gaps = 131/515 (25%)

Query: 153  AWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             W          V   R   + LE L  + E+ L  +   + + G  +D A    L++  
Sbjct: 608  EWADASARLGQ-VLAQRVAAEGLERLYDTLERPLIEILADMEEAGVALDRARLRQLSRDF 666

Query: 212  DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267
                T L+++   L  G   +     +L+  LF   GL     T      T Q VL    
Sbjct: 667  SARLTDLERQAHQLA-GEPFNLSSPPQLRVILFERLGLPPRGKTPKGEASTAQEVLEELA 725

Query: 268  KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
             L  Q  +V     R  +     L+ L    + DGR+R T                    
Sbjct: 726  ALH-QLPKVLLEHRRIEKLKNTYLDALPNLTHPDGRIRATF------------------- 765

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK--LVVAD 380
                        +Q +T      +S+P+   I         VR   +A +  +  L+ AD
Sbjct: 766  ------------NQGVTATGRLSSSEPNLQNIPVRTEEGRQVRQAFVAGDPARQVLLTAD 813

Query: 381  LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
             + IE RVLA  + +   L+AFE   D++    A+ F VA   VT DQR + K +   + 
Sbjct: 814  YSQIELRVLAHFSRDPALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNFGVI 873

Query: 441  YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
            Y   A     +AS  G++ +  A  +        + D               A +   + 
Sbjct: 874  YGLSA---HGLASRLGISQSEAAAFINA------YFDQYPHVEAFMTRVLTQARDTGRV- 923

Query: 501  TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                               + +  R+R    + +++    NL  
Sbjct: 924  -----------------------------------ETLEGRRRAINGIKHVEGRHRNLA- 947

Query: 561  MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                            R+ +NT                  ++Q  + D++   M+   + 
Sbjct: 948  ---------------ERTAINT------------------VIQGSAADLIKRAMIAVDQR 974

Query: 621  G------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
                     ++L +HDE++ E         + L  
Sbjct: 975  LKETKLPARMILQIHDELLFEVERDALTETARLVQ 1009


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/517 (16%), Positives = 153/517 (29%), Gaps = 136/517 (26%)

Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210
             G   + R ++  L  L             E  L  +   +   G+ VD        + 
Sbjct: 421 WAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKE 480

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNK 267
           ++ +  KL+ ++  +  G   +    ++L   LF +  L +   T+T       VL    
Sbjct: 481 IESKLLKLESQIYQIA-GEWFNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELY 539

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   + + RM                                     +   +    
Sbjct: 540 DKHDIIPLILDYRMYTKILTT------------------------------YCQGLVQA- 568

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
             P   R H    Q  T      +++P+   I         +R   +  EG  L+ AD +
Sbjct: 569 INPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYS 628

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA ++ ++  + AF+   D++  T A  F V  +QVT   R+  K +   + Y 
Sbjct: 629 QIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYG 688

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                   ++    ++    A  +                                    
Sbjct: 689 ISDY---GLSRDIKISRKEAAEFINRYF-------------------------------- 713

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                    +K+ RV E    L    +   ENG  +    R+         +KN      
Sbjct: 714 ---------EKYPRVKE---YLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKN------ 755

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG- 621
              R+         R  +N+                   +Q  + DI+   M+   K   
Sbjct: 756 --LRNYA------ERIAMNSP------------------IQGSAADIMKIAMIRVYKKLK 789

Query: 622 -----YDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
                  I+L VHDE++ E+P +  E    ++   M 
Sbjct: 790 ENNLKSRIILQVHDELLIESPYEEKEIVKEIVKSEME 826


>gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70]
 gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s]
 gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923]
 gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2]
 gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150]
 gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023]
          Length = 866

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 94/551 (17%), Positives = 176/551 (31%), Gaps = 69/551 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+   +       + S  +   L+            I   V A    L   L + G  +
Sbjct: 353 LKDFFADKATQFFGYRSKRDNHALRN---------SGIDVHVTADLV-LAEHLVSGGAKI 402

Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
              +  ME G  +    F K      L  ++ P     +  FG +    + +   +F +L
Sbjct: 403 SFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPSQY--FGMFASKLLAIKNYLFVKL 460

Query: 176 EP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E         + EQ L  +   +   G  +D      L++ +  E  +  QE+  L  G 
Sbjct: 461 EEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDL-VGC 519

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             + +  ++L   L+   G+   D  ++T   VL + +       ++             
Sbjct: 520 EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEVLEALEDRHEIIPKIL------------ 567

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                               F    +         P Q      R H   +Q+ T     
Sbjct: 568 -------------------MFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRL 608

Query: 350 ITSDPDPLQII-----SDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
              DP+   I         +R    +  +    + AD + IE R LA ++ ++   +AF 
Sbjct: 609 SCQDPNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFN 668

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +GED++  T ++ FNV   QVTK QR   K +   L Y   A     ++    ++++   
Sbjct: 669 SGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGLVYGQQAY---GLSKILKISVSEAQ 725

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L+    A   +  A  F     E   ++      +G   ER+   W +           
Sbjct: 726 GLMDAYFAR--YPLAAEFITQTIEQASKNQKVTTMLGR--ERILSDW-ESSPGARAASGR 780

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNT 582
           L      T   G A    K   + +    + +     L+L     L++         + +
Sbjct: 781 L---AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRS 837

Query: 583 TTRQLTREYTY 593
             ++       
Sbjct: 838 LVQEKMESAME 848



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 595 GKLTENI-VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646
           G+L  N  +Q  + +++   M+N +           ++L +HDE++ E P  + E   S+
Sbjct: 779 GRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSL 838

Query: 647 LYHLMT 652
           +   M 
Sbjct: 839 VQEKME 844


>gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29]
 gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29]
          Length = 890

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 99/632 (15%), Positives = 203/632 (32%), Gaps = 141/632 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +  K  L N ++     ++   R ++   +   I I      L++A     P+       
Sbjct: 369 EAFKAWLANGEMRKRTFDAK--RAIVALKW-KGIDIQGIDFDLLIAAYLLDPADTDKDFR 425

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +  KM+E   +       ++ E +Y +          +  E+    V V  ++ + 
Sbjct: 426 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 474

Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            LE L   EQ          L  +   +  +G  VD      + + +     +++QE+  
Sbjct: 475 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 534

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF    L +   T+T       VL            + + R 
Sbjct: 535 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 593

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ D                               S+ H   +Q
Sbjct: 594 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 622

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395
           ++T      ++DP+   I         +R   + SE G  +  AD + IE RVLA +A +
Sbjct: 623 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 682

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 683 KGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 739

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +      E++ ++    +   ++  + A +  ++                
Sbjct: 740 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYV---------------- 777

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                A +  +RR +P +  +           + RS        
Sbjct: 778 ---------------------ATLLNRRRYIPEITSRNF---------NLRSFA------ 801

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R+ +NT  +    +                  I+    ++       ++L VHDE++ E
Sbjct: 802 ERTAMNTPIQGSAADII------------KIAMIIMADRLDEEGLQARLLLQVHDELIFE 849

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
            P  +      L   +M      A  +PLK +
Sbjct: 850 APKEEIEKLEKLVPEVMEHAIELA--VPLKVD 879


>gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
 gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
          Length = 869

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 108/583 (18%), Positives = 194/583 (33%), Gaps = 76/583 (13%)

Query: 29  CVILFAFGFDDHPVELWDC--VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A   DD  V   D     D V+ + LK+     D     +N   +   LK   N 
Sbjct: 327 SLMGVALACDDS-VYYVDVENATDDVI-KPLKDFFGRKDTEFYGYNIKRDSHALK---NA 381

Query: 87  DIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
            I ++     L LA      G   + + +   L L S     GKE               
Sbjct: 382 GIHVNNIALDLALAEHLINGGAKISYQTLLADLGLVSSAGRYGKEWGQL-------SLPI 434

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGY 197
            ++ PN  +    FGE+     T+   + K L+  +      + E  L  +  TI   G 
Sbjct: 435 QKSPPNPAQ---YFGEFVSHLPTIKETLLKELKSKNIEDIFFNMEMPLEKVLFTIERNGM 491

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +DV     L +I+  E   L  ++ +L  G   + +  ++L   L+ + GL   D   +
Sbjct: 492 PLDVEDLQNLEKILSEELAILADDIYALA-GSPFNIKSPKQLAEVLYNKLGLTPVDKARS 550

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL +         ++                                 F    +  
Sbjct: 551 TKAEVLEAMTGEHDVIEKILA-------------------------------FRSVEKLL 579

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-AS 371
                  P Q  P   R H   +Q+ T        DP+   I         +R       
Sbjct: 580 STYVRALPKQVDPCTFRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTH 639

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +    + AD + IE R LA ++ ++    AFE+ ED++  T ++ F+V   +VTK QR  
Sbjct: 640 QNTYFLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQ 699

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y   A     ++    ++++    L+      + + D   F         E
Sbjct: 700 AKTVNFGIIYGQQAY---GLSKILKISVSEAQKLIDA--YFDRYPDVARFINETVSQACE 754

Query: 492 HAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           +      +G   ER+   W +  +SR +        A    I+   A + +         
Sbjct: 755 NLRVKTLLGR--ERIIDNWTEFSNSRAAS----GRLAVNTRIQGSAAELIKLAMLQLSDA 808

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           ++K K    ++L     L++      +  + T  R +      
Sbjct: 809 LEKRKLRSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAMI 851



 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 595 GKLTENI-VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVC 634
           G+L  N  +Q  + +++   M+  + A         ++L +HDE++ 
Sbjct: 782 GRLAVNTRIQGSAAELIKLAMLQLSDALEKRKLRSRMLLQIHDELIF 828


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 110/619 (17%), Positives = 199/619 (32%), Gaps = 144/619 (23%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P  DE  A   ++
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVP-NDELTAIKKLV 852

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M +    A  +PL  +
Sbjct: 853 KDTMEAAVDLA--VPLCVD 869


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/483 (15%), Positives = 145/483 (30%), Gaps = 127/483 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G+ VD        + ++ +  KL+ ++  +  G   +    ++L  
Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIA-GEWFNINSPKQLSY 511

Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L +   T+T       VL            + + RM                 
Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                 +G LQ                    P   R H    Q  T      +SDP+   
Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +   G  L+ AD + IE R+LA ++ ++  + AF+   D++  T 
Sbjct: 601 IPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F V  A VT + R+  K +   + Y         +A    ++    A  +       
Sbjct: 661 AEVFGVDIADVTPEMRSQAKAVNFGIVYGISDY---GLARDIKISRKEAAEFIN------ 711

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 +   R  ++   +    +   +
Sbjct: 712 --------------------------------------RYFERYPKVKEYIDNTVKFARD 733

Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           NG  + +  ++R +  +                R+L        R  +N+          
Sbjct: 734 NGFVLTLFNRKRYIKDIKST------------NRNL---RGYAERIAMNSP--------- 769

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DI+   M+   +          I+L VHDE++ E P  ++     
Sbjct: 770 ---------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKE 820

Query: 647 LYH 649
           +  
Sbjct: 821 IVK 823


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDIVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P+ +      L  
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853

Query: 650 -LMTSNPSWAKGLPLKAE 666
             M +    A  +PL  +
Sbjct: 854 DTMEAAVDLA--VPLCVD 869


>gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 561

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 93/564 (16%), Positives = 188/564 (33%), Gaps = 85/564 (15%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVM------------PQVLKEALENTDVTIVAHNSYFE 76
            +   AF F +  V   D      +               +K+ L       +   S + 
Sbjct: 17  EIKKIAFSFGEDTVY-IDVFQIEDLKEIFEKEEFEFTTHEIKDFLVKLSYKGIECKSKYI 75

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKE--LIAR 132
            T + A   L+     +    VL +     +PS  +  G+      +K+EE  E  L   
Sbjct: 76  DTAIMAYL-LNPSESNYDLDRVLKKYLKVDVPSYEEVFGK--GRDKKKLEEIGEDILADY 132

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            C           +  + RE    F E          ++ K L      E  L  + + +
Sbjct: 133 ICS-------RCVHLFDLREKLMNFIE--------EMDMKKLL---LEIEMPLVEVLKLM 174

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G+ +D  +   L+Q +D    ++  ++     G   +    ++L  +LF +  L + 
Sbjct: 175 EVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVI 233

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
             T+T         ++L P                        + ++        +++  
Sbjct: 234 KKTKTGYSTDSEVLEQLVP----------------------YNDVVSD------IIEYRQ 265

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
            ++        F P      +R H    Q++T      +++P+   I         +R  
Sbjct: 266 LTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRA 324

Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            I   +   +V AD + IE RVLA ++G++  +++F   ED+++ T A  F V   +VT 
Sbjct: 325 FIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTP 384

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         ++    ++       +        + +     +   
Sbjct: 385 EMRRAAKAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYI 435

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           E     A E+ ++ T   R ++   + +SR     ++  +        G A    K   V
Sbjct: 436 EKIVRFAKENGYVTTIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMV 494

Query: 547 PLVY-MKKDKNNLILMLPSGRSLV 569
            +    KK +    L+L     LV
Sbjct: 495 KVYEDFKKLQLKSQLILQVHDELV 518


>gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 895

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 91/521 (17%), Positives = 155/521 (29%), Gaps = 131/521 (25%)

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + D  V      RL  LS  E  L +L   +   G  VD      L +    +  +   
Sbjct: 477 AELDSAVEAAGGDRL--LSEVELPLLHLLARMEKTGIAVDTEHLDALERHFAGQMKQAAD 534

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           E   +  G   +    ++L+  LF E  +     T+T       + ++L  +    F   
Sbjct: 535 EAYGVI-GKEINLGSPKQLQVVLFDELDMPKTKRTKTGWTTDADALQQLYVKTEHPFLLA 593

Query: 281 MRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +   R      + +  L++ +  DGR+  T                              
Sbjct: 594 LLRHRDVTRLRVTIEGLLKTVQDDGRIHTT------------------------------ 623

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391
             +Q I       +++P+   I         +R   +   G + L+ AD + IE R++A 
Sbjct: 624 -FNQTIAATGRLSSTEPNLQNIPVRTEEGRGIRKGFVVGGGFESLMTADYSQIEMRIMAH 682

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++  ++AF +G D +  T AR F V P  V+ +QRA  K M   L Y   A    + 
Sbjct: 683 LSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNYGLAYGLSAFGLSQ- 741

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G+  +    L                                              
Sbjct: 742 --QLGIEPSEARGL--------------------------------------------ME 755

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +       + + L    E+    G       RR             L  +L   R    R
Sbjct: 756 EYFETFGGIRDYLRSLVEEARRTGYTETIMGRRRY-----------LPDLLSDNRQ---R 801

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
                R  LN                    +Q  + D++   M+    A         ++
Sbjct: 802 RETAERMALNAP------------------IQGSAADLIKVAMLRVQAAIDEADLSSRML 843

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
           L VHDE+V E    +      L    M S       +PL  
Sbjct: 844 LQVHDELVFEVAPGEREALESLVRAQMGSAAD--LNVPLDV 882


>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
          Length = 877

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 82/547 (14%), Positives = 184/547 (33%), Gaps = 76/547 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +   + L++ ++     ++   R ++   +   + I      L++A     P+       
Sbjct: 356 EAFIKWLKDEEMRKYTFDAK--RAIVALKW-KGVEIRGVDFDLLIAAYLLDPADTDKDFR 412

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167
               +  KM+E   +       ++ E +Y +       A  +  E+    V V       
Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPAQEIVAEHVARKVHVLYDVKQT 461

Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                E  ++ E   + E  L  +   +  +G  VD      +   +     +++QE+  
Sbjct: 462 FIDELEKNEQYELFINLEMPLACVLADMEVKGVKVDTERLRNMGDELAGRLKEMEQEIYE 521

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF +  L +   T+T       VL           ++ + R 
Sbjct: 522 LA-GTEFNINSPKQLGVVLFEKLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPKILHYRQ 580

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++ +                               S+ H   +Q
Sbjct: 581 L-GKLNSTYIEGLLKVVHDE------------------------------SSKIHTRFNQ 609

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
           ++T      +++P+   I         +R   I S EG  +  AD + IE RVLA +A +
Sbjct: 610 VLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSQEGWVMYAADYSQIELRVLAHIAKD 669

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+   D++  T    F V   +VT + R   K +   + Y        +     
Sbjct: 670 KGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNFGIVYGISDYGLSQ---NL 726

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +      E++  +    +   +   + A +  ++ T   R ++   +  S
Sbjct: 727 GITRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR-RRYIPEITS 779

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVG 574
           R   + +   +    T   G A    K+  + +    +++     L+L     L++    
Sbjct: 780 RNFNVRSFAERTAMNTPIQGSAADIIKKAMIVMADRLEEEGLQARLLLQVHDELIFEVPK 839

Query: 575 NNRSYLN 581
                L 
Sbjct: 840 EEIEKLE 846


>gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20]
          Length = 945

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 95/515 (18%), Positives = 153/515 (29%), Gaps = 129/515 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                  L   +  E  +      + D G  VD A+       +D  R     E      
Sbjct: 532 QMVARDALGLFTDLEMPVAATLTVMEDAGIAVDDAVLQIRQTELDA-RVTHAAEGAYAAA 590

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    ++L+  LF E  +     T+T       +   L  +    F   +   R A
Sbjct: 591 GRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDA 650

Query: 288 VL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     +  L +A+  DGR+  T                                 Q I 
Sbjct: 651 IKLRQTVEGLRKAIQPDGRIHTT-------------------------------FQQTIA 679

Query: 345 HLPTSITSDPDPLQIISD-----CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWK 398
                 ++DP+   I +       +R      EG + L+ AD + IE R++A ++ +Q  
Sbjct: 680 ATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRIMAHLSADQAL 739

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF +GEDL+    A    +    VT  QR+  K M   L Y         +A   G++
Sbjct: 740 IDAFRSGEDLHRYVAALVHGIDVEDVTAQQRSHVKAMSYGLAYGLSTF---GLARQLGID 796

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A L                                                 +R  
Sbjct: 797 NADAADLRN--------------------------------------------AYFARFG 812

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           ++ + L    EQ   +G       RR                 LP               
Sbjct: 813 KVHDYLESVVEQARRDGYTETMFGRRRY---------------LP--------------- 842

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
            L +  RQ  RE      L   I Q  + DI+ + M++   A         I+L +HDE+
Sbjct: 843 DLTSDNRQ-RREMAERAALNAPI-QGSAADIVKKAMIDVDSALTERALASRILLQIHDEL 900

Query: 633 VCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E  P   E   ++L   M         +PL   
Sbjct: 901 LIEVAPGEAEAVENLLKEQMGGAAE--LSVPLDVA 933


>gi|332523957|ref|ZP_08400209.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332315221|gb|EGJ28206.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 887

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 109/689 (15%), Positives = 211/689 (30%), Gaps = 185/689 (26%)

Query: 25  AED----VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           AED      ++        + AF + +              P++L++ L    +      
Sbjct: 326 AEDSFFYFEILKDNYHREAITAFAWGNQEAIYV-----SQNPELLRQPLFTKVLEKPIFT 380

Query: 73  SYFER-TVLKACFNLDIPIHRWICTLVLARSNGLP------SALKAVGEALKLSSQKMEE 125
             F+R  VL     ++IP         LA            + +  +  ++ L S +   
Sbjct: 381 YDFKRAKVLLNHLGIEIP--EAAFDARLANYLLSNVDDNELATIARLHTSISLESDEAIY 438

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---- 181
           GK +   F                      LF    +    +       LE L+      
Sbjct: 439 GKGVKRAF-----------------PAKDLLFSHLARKVAVLAASKPVMLEKLADNGQSD 481

Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   +   G  V+      + +        L QE+  L  G   +    
Sbjct: 482 LYYKIELPLANVLAKMEIAGIKVNKQTLMEMAEQNRNVIDALTQEIYDLA-GEEFNINSP 540

Query: 237 EKLKTWLFLETGLH--LEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++L + LF +  L   +   T+T       VL     + P   ++ + R      +   L
Sbjct: 541 KQLGSILFEKMQLPLTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTY-L 599

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L + +  DG++                               H    Q +T      +
Sbjct: 600 IGLQDYIMEDGKI-------------------------------HTRYVQDLTQTGRLSS 628

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVAD-LAGIEARVLAWMAGEQWKLKAFETG 405
           +DP+   I         +R     S    ++++   + IE RVLA ++G++  + AF   
Sbjct: 629 TDPNLQNIPIRMEQGRLIRKAFTPSSDDSVLLSSDYSQIELRVLAHISGDEHLIAAFNNN 688

Query: 406 EDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            D++  T  R F +     VT + R   K +   + Y         +++  G++      
Sbjct: 689 ADIHTATAMRVFGIEKETDVTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKARD 745

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            + T      + +     +   ++    A +  ++                         
Sbjct: 746 YIDT------YFERYPGIKAYMDSVVREAKDKGYVE------------------------ 775

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                         + ++RR++P +              + R+   R     R+ +N+  
Sbjct: 776 -------------TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP- 806

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPD 638
                            +Q  + DIL   M+N  KA  D      ++L VHDEIV E P+
Sbjct: 807 -----------------IQGSAADILKIAMINLDKALADRAFKAKMLLQVHDEIVLEVPN 849

Query: 639 TDEFNASML-YHLMTSNPSWAKGLPLKAE 666
            +      L   +M      A  +PL+A+
Sbjct: 850 QELVTVRQLVKEIMEDAVDLA--VPLRAD 876


>gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J]
 gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J]
          Length = 881

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 110/659 (16%), Positives = 208/659 (31%), Gaps = 155/659 (23%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNLDIPIHR 92
            F + +    ++   +  V+   + +A     +        F+R  +L +  N+D+P  R
Sbjct: 341 TFAWGNTE-NIYVSQNPEVLKTDVFQAFLRKPMATY----DFKRAKILLSHLNIDVP--R 393

Query: 93  WICTLVLARSNG---LPSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRN 146
                 LA         + L  +        L S  +  GK +   F      + L   +
Sbjct: 394 GAFDARLANYLLSNVDDNQLSTIARVHTNIHLESDDVVYGKGVKRAF----PDKGLLFAH 449

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                +           D         +L      E  L  +   +   G  V+      
Sbjct: 450 LAKKIKVLVESKAT-MLD---KLSDHDQLALFEDIEMPLANVLAKMEITGIKVNKETLVE 505

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR--- 261
           + +   V   +L QE+  L  G   +    ++L + LF +  L +E    T+T       
Sbjct: 506 MAEQNKVIIDRLTQEIYDLA-GEEFNINSPKQLGSILFEKMQLPIEMTKKTKTGYSTAVD 564

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL     + P   ++ + R      +   L  L + +  DG++                 
Sbjct: 565 VLERLAPIAPVVAKILDYRQITKLQSTY-LIGLQDYIMEDGKI----------------- 606

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKK 375
                         H    Q +T      + DP+   I         +R    AS E   
Sbjct: 607 --------------HTRYVQDLTQTGRLSSIDPNLQNIPIRMEQGRLIRKAFTASSEDAL 652

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKV 434
           L+ +D + IE RVLA ++G+Q  + AF    D++ +T  R F +   + VT + R   K 
Sbjct: 653 LLSSDYSQIELRVLAHISGDQHLITAFNEDADIHTSTAMRVFAIDKEEDVTANDRRNAKA 712

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y         +++  G++       + T      + D     +   ++    A 
Sbjct: 713 VNFGIVYGISDF---GLSNNLGISRQKAKEYINT------YFDRYPGIKDYMDSIVREAK 763

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
           +  ++                                       + ++RR++P +     
Sbjct: 764 DKGYVE-------------------------------------TLFKRRRELPDI----- 781

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                    + R+   R     R+ +N+                   +Q  + DIL   M
Sbjct: 782 ---------NSRNFNVRSF-AERTAINSP------------------IQGSAADILKIAM 813

Query: 615 MNATKAGYD------IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           +N  KA  +      ++L VHDEIV E P  +      L    M         +PL+A+
Sbjct: 814 INLDKALEEGRFKTKMLLQVHDEIVLEVPKDELEKVKQLVKETMEHAVD--LSVPLRAD 870


>gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 871

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/503 (15%), Positives = 151/503 (30%), Gaps = 129/503 (25%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L +    +   G  V         Q +  +  +L+ E+  +  G   +    ++
Sbjct: 472 TDIEMPLAFTLFDMEQAGVKVKAEELKVYGQQLGGKINELETEIYEIA-GETFNINSPKQ 530

Query: 239 LKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L   LF    L     T+T   T   VL       P   ++   R  A   +    + L 
Sbjct: 531 LGVVLFEHLNLPNGKKTKTGYSTAADVLEKLAPDYPIVSKILEYRQLAKLKSTYA-DGLA 589

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
             +  DG                               R H + +Q +T      +++P+
Sbjct: 590 NFIQEDG-------------------------------RIHGKFNQTVTATGRISSTEPN 618

Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I     +   +R   +  E    V AD + IE R+LA  +G++  + A++   D++ 
Sbjct: 619 LQNIPVRMELGRLIRKVFVPEEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHR 678

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T ++ F++   +VT  +R   K +   + Y   +    +      +        +    
Sbjct: 679 ITASQVFHIPFDEVTDLERRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAGEYID--- 732

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                  + + +  +    ++     ++
Sbjct: 733 --------------------------------------NYFKTYPGIKTFLDDTVAHAKE 754

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             +     +  +RR VP              L SG  +        R  +N         
Sbjct: 755 --QGYVVTLFGRRRPVP-------------ELESGNFMQRSF--GERVAMNAP------- 790

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFN 643
                      +Q  + DI+   M+   +          +VL VHDE++ E   D  E  
Sbjct: 791 -----------IQGTAADIMKIAMIGVNRTLKEKQMKSKLVLQVHDELLIEAYKDEVEEV 839

Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666
            S+L   M    S    +PL  +
Sbjct: 840 KSILKREMEEAAS--LSVPLDID 860


>gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 598

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 144/486 (29%), Gaps = 123/486 (25%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L Y    +   G   +          + V+   L+Q++   T G   +    ++
Sbjct: 199 TDIEMPLIYSLFHMEQVGIKAERVRLKEYGDRLKVQIAVLEQKIYEET-GETFNINSPKQ 257

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   LF    L     T++          KL P    V                      
Sbjct: 258 LGEVLFDHMKLPNGKKTKSGYSTAADVLDKLAPDYPVV---------------------- 295

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                 +  L +   ++              P   R H   +Q IT      +++P+   
Sbjct: 296 ------QMILDYRQLTKLNSTYAEGLAVYIGP-DERIHGTFNQTITATGRISSTEPNLQN 348

Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I     +   +R   +  +G   + AD + IE RVLA M+G++  + A+   ED++  T 
Sbjct: 349 IPVRMELGREIRKIFVPEDGYVFIDADYSQIELRVLAHMSGDERLIGAYRHAEDIHAITA 408

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F+    +VT  QR   K +   + Y   +    +      ++       +       
Sbjct: 409 SEVFHTPLDEVTPLQRRNAKAVNFGIVYGISSFGLSE---GLSISRKEATEYIN------ 459

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                               + + +  V E    L +      E
Sbjct: 460 -----------------------------------KYFETYPGVKEF---LDRLVADAKE 481

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYT 592
            G A+    RR                 +P  +S  +       R  +N+          
Sbjct: 482 TGYAVSMFGRR---------------RPVPELKSANFMQRSFGERVAMNSP--------- 517

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNAS 645
                    +Q  + DI+   M+   +A         IVL VHDE++ ET  D  E   +
Sbjct: 518 ---------IQGTAADIMKIAMIRVDRALKAKGLKSRIVLQVHDELLIETRKDEVEAVKA 568

Query: 646 MLYHLM 651
           +L   M
Sbjct: 569 LLVDEM 574


>gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1]
 gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1]
          Length = 887

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 107/647 (16%), Positives = 201/647 (31%), Gaps = 159/647 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+  LE+  +     +       L     L I +H     ++LA                
Sbjct: 367 LRHLLEDEQIKKNVFDLKRTMVGLHR---LGIHVHGQDYDMLLASYLINNEN-------- 415

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RL 175
             +S  + E   L   +      E        +  +       +    V     + +  L
Sbjct: 416 --NSNDLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDDDEELFNHLASKVNAIENLKQPLL 473

Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           E L   EQ+  +         +   +   G  V+ +    L     V   +L+ ++    
Sbjct: 474 EKLKEHEQDDLFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKIYQQA 533

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRA 283
            G   +    ++L   LF +  L +   T+T       VL   K  +P   ++ + R  A
Sbjct: 534 -GERFNLNSPKQLGHILFEKLNLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIA 592

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
              +   +  L++ +  DG                               R H    Q +
Sbjct: 593 KIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYLQTL 620

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIA--SEGKKLVVADLAGIEARVLAWMAGEQ 396
           T      + DP+   I         +R   +    +G      D + +E RVLA ++G+Q
Sbjct: 621 TATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPTEPDGYIF-SCDYSQVELRVLAHVSGDQ 679

Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +AF+TG D++  T  R F++  P +VT   R   K +   + Y         ++   
Sbjct: 680 NMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNL 736

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++       +                    E +P                         
Sbjct: 737 GISRKRAQEFIDN----------------YFEQYP------------------------- 755

Query: 516 RVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              ++   + +A +   E G A  I  +RR +P ++ KK          + RS       
Sbjct: 756 ---QIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKF---------TVRSFA----- 798

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
             R+ +N+                   +Q  + DI+   M+N  K          +V+ V
Sbjct: 799 -ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQV 839

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
           HDE++ + P  +      +   +M S       +PL A+ G+    Y
Sbjct: 840 HDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
           pyogenes SSI-1]
          Length = 880

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P+ +      L  
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853

Query: 650 -LMTSNPSWAKGLPLKAE 666
             M +    A  +PL  +
Sbjct: 854 DTMEAAVDLA--VPLCVD 869


>gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
 gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
          Length = 885

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 102/658 (15%), Positives = 205/658 (31%), Gaps = 149/658 (22%)

Query: 34  AFGFDDHPVELWDCVHD-PVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            F   D   + W    D  ++ Q  LK+ LE+  V     N+  +   L     L I + 
Sbjct: 341 GFVIGDG--KTWLVSRDAELLKQDPLKKLLESPAVAKNVFNAKAQIVGLHR---LGIDLR 395

Query: 92  RWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                L+LA        ++      AL+    ++   +E+  +  K         R  P 
Sbjct: 396 NVDFDLLLASYLLNTNDNSNDLGQVALEHDYHEVATDEEVYGKGAK---------RAIPA 446

Query: 150 HREAWRLFGEYCKGDVTVTRE-IFKRL------EPLSSKEQELWYLDQTINDRGYCVDVA 202
             + +          +   R  +FK+L         +  E  L  +   +   G  V+  
Sbjct: 447 DDQVFYTHLAQKARAIDDLRAPLFKKLDDNQQTPLYTDIEVPLTRVLAAMEITGIKVNAQ 506

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
               +   +      ++ ++ +   G   +    ++L   LF +  L +   T+T     
Sbjct: 507 TLKDMGSKLTERLADIESQIYA-AAGEEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTA 565

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           +   +KL  QA  V +                             LQ+   ++       
Sbjct: 566 VDVLEKLADQAPIVED----------------------------ILQYRQIAKLQSTYIT 597

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKL 376
                      + H    Q +T      + DP+   I         +R   + S  G ++
Sbjct: 598 GLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHAGWQI 657

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVM 435
             +D + +E RVLA + G++   + F+ GED++ +T  R F++    ++ ++ R   K +
Sbjct: 658 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAV 717

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y         +A    ++       ++  +  +E+   + +         EH   
Sbjct: 718 NFGIVYGISDY---GLAQRIHVSRAQAHEFIQ--NYFKEFPGVKKYIDDTIAFAREHGYV 772

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           +                                          I  +RR +P ++ K   
Sbjct: 773 E-----------------------------------------TITHRRRYLPDIHAKSFS 791

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     RS         R+ +NT                   +Q  + DI+   M+
Sbjct: 792 R---------RSFA------ERTAMNTP------------------IQGSAADIIKIAMI 818

Query: 616 NAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
                    +    ++L +HDE+V E P  +      ++  +M S       +PLK E
Sbjct: 819 RMKEEIKQRQLQARMLLQIHDELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVE 874


>gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
 gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P+ +      L  
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853

Query: 650 -LMTSNPSWAKGLPLKAE 666
             M +    A  +PL  +
Sbjct: 854 DTMEAAVDLA--VPLCVD 869


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 120/660 (18%), Positives = 191/660 (28%), Gaps = 155/660 (23%)

Query: 33  FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A      P   +D    D    +   E + + D   V HN+     +++        + 
Sbjct: 376 IALATGSGPAAFFDPSQLDEADERTFAEWIADPDRPKVLHNAK---GIMRVFAEHGWSVA 432

Query: 92  RWICTLVLARSNGLPS---------ALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                  LA     P          +++ +G  L   +   + G+        G   E  
Sbjct: 433 GVTMDTALAAYLVKPGRRSFELDALSVEYLGRELS-PAVAADSGQ-----LAFGADDEAE 486

Query: 143 YDRNKPNHREAWRLFGEYCKG--DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
            D      R    L   +     DV            L   E  +  L   +   G   D
Sbjct: 487 RDALMIKARTILDLGEAFGGRLKDVGAA-------GLLHDMELPVSELLARMERSGIAAD 539

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
                 + Q          QE  +   G   +    ++L+  LF E GL     T+T   
Sbjct: 540 RGWLERMEQQFAAAVQHAVQEAHA-AVGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYT 598

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
               +   L  Q        M   R                 RLR T++  G  +T    
Sbjct: 599 TDADALAWLAGQTDHELPVIMLRHR--------------EQARLRSTVE--GLIKT---- 638

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-K 374
                   +   SR H   +Q +       ++DP+   I         +R   +  +G +
Sbjct: 639 --------IAPGSRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGDGFE 690

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T  ++ F+V  + V  + R   K 
Sbjct: 691 SLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEMRRKIKA 750

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           M   L Y   A    +     G+  +                                  
Sbjct: 751 MSYGLAYGLSAFGLSQ---QLGITPDEA-------------------------------- 775

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                       +K       R   + + L +  E+    G       RR          
Sbjct: 776 ------------RKLMENFFERFGGVRDYLQRVVEEARATGYTETMLGRRRY-------- 815

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                  LP                L +  RQ  RE      L   I Q  + DI+   M
Sbjct: 816 -------LP---------------DLTSDNRQ-RREMAERMALNAPI-QGTAADIVKIAM 851

Query: 615 MNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGL--PLKA 665
           +         K    ++L VHDEIV E    +      L    MT     A GL  PL  
Sbjct: 852 LKVDAALTGEKLSSRMLLQVHDEIVLEIAPGERERVEELVRREMTG----AFGLSAPLDV 907


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 212/683 (31%), Gaps = 165/683 (24%)

Query: 16  LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAH 71
           L   G    Y  D   +  A    D      D     V P     L E L +       H
Sbjct: 339 LAVVGTYTPYDGDATAVAIASADGDGA--YIDTTT--VTPDDEAALAEWLADAARPKALH 394

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKM---EEG 126
            +      + A       +        LA     P   +      +L+   +++   ++G
Sbjct: 395 EAK---QAIHALAGRGWELGGVTSDTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDDG 451

Query: 127 KELIARF-------CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           ++ ++          K    + L  R   +  +           DV + R     L  L+
Sbjct: 452 EQQLSLLDEDGAGDAKAAQAQMLRARAVIDLAD---------ALDVELERIESAGL--LT 500

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
             E  +  +   +   G  VD     +L NQ     R   D     +  G   +    ++
Sbjct: 501 DMELPVQRVLAGLESVGIAVDTDHLSSLQNQFASGIREAADAAYAVI--GKQINLGSPKQ 558

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLV 295
           L+  LF E G+     T+T       + + L  +    F   +   R      + ++ L+
Sbjct: 559 LQVVLFDELGMPKTKKTKTGYTTDADALQTLFDKTGHPFLEHLLTHRDVTRLKVTVDGLL 618

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           +++ +DGR+  T                                +Q I       +++P+
Sbjct: 619 KSVAADGRIHTT-------------------------------FNQTIAATGRLSSTEPN 647

Query: 356 PLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +R   +   G + L+  D + IE R++A ++ ++  ++AF TGEDL+
Sbjct: 648 LQNIPVRTEAGREIRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGEDLH 707

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               AR+F V   +VT + R   K M   L Y   A     +A+   ++ +         
Sbjct: 708 SFVAARAFGVPIDEVTAELRRRVKAMSYGLAYGLSAY---GLATQLKISNDEA------- 757

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                K+   Q  SR   + + L    +
Sbjct: 758 -------------------------------------KEQMDQYFSRFGGVRDYLRAVVD 780

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q  ++G       RR              +  L SG  L                    R
Sbjct: 781 QARKDGYTSTVLGRRR------------YLPDLDSGDRL-------------------RR 809

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFN 643
           E      L   I Q  + DI+   M+   KA         ++L VHDE++ E  + +  +
Sbjct: 810 EAAERAALNAPI-QGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERES 868

Query: 644 ASMLY-HLMTSNPSWAKGLPLKA 665
              L    M S  ++   +PL+ 
Sbjct: 869 LEALVRKTMGS--AYPLDVPLEV 889


>gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505]
 gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505]
          Length = 946

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 95/504 (18%), Positives = 155/504 (30%), Gaps = 129/504 (25%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  +      + D G  VD A+ H     +D  R     E      G   +    ++
Sbjct: 544 TDLEMPVAATLTVMEDAGIAVDDAVLHARQTELDA-RVTHAAEGAYAAAGRELNLSSPKQ 602

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLV 295
           L+  LF E  +     T+T       +   L  +    F   +   R A+     +  L 
Sbjct: 603 LQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQTVEGLR 662

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           +A+ +DGR+  T                                 Q I       ++DP+
Sbjct: 663 KAIQADGRIHTT-------------------------------FQQTIAATGRLSSTDPN 691

Query: 356 PLQIISD-----CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I +       +R      EG + L+ AD + IE R++A ++ +Q  ++AF +GEDL+
Sbjct: 692 LQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAFRSGEDLH 751

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               A    +    VT  QR+  K M   L Y         +A   G++    A L    
Sbjct: 752 RYVAALVHGIEVEDVTAQQRSHVKAMSYGLAYGLSTF---GLARQLGIDNAEAADLRN-- 806

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                        +R  ++ + L    E
Sbjct: 807 ------------------------------------------AYFARFGKVHDYLESVVE 824

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q   +G       RR                 LP                L +  RQ  R
Sbjct: 825 QARRDGYTETMFGRRRY---------------LP---------------DLTSDNRQ-RR 853

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PDTDEF 642
           E      L   I Q  + DI+ + M++   A         I+L +HDE++ E  P   E 
Sbjct: 854 EMAERAALNAPI-QGSAADIVKKAMIDVDSALREQALTSRILLQIHDELLIEVAPGEAEA 912

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
             ++L   M         +PL   
Sbjct: 913 VENLLKEQMGGAAE--LSVPLDVA 934


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P+ +      L  
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853

Query: 650 -LMTSNPSWAKGLPLKAE 666
             M +    A  +PL  +
Sbjct: 854 DTMEAAVDLA--VPLCVD 869


>gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 880

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 107/618 (17%), Positives = 196/618 (31%), Gaps = 142/618 (22%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +        L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILT-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P+ +      L  
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853

Query: 650 -LMTSNPSWAKGLPLKAE 666
             M +    A  +PL  +
Sbjct: 854 DTMEAAVDLA--VPLCVD 869


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 82/517 (15%), Positives = 154/517 (29%), Gaps = 136/517 (26%)

Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210
             G   + R ++  L  L             E  L  +   +   G+ VD        + 
Sbjct: 421 WAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKE 480

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNK 267
           ++ +  KL+ ++  +  G   +    ++L   LF +  L +   T+T       VL    
Sbjct: 481 IESKLLKLESQIYQIA-GEWFNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELY 539

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   + + RM                                     +   +    
Sbjct: 540 DKHDIIPLILDYRMYTKILTT------------------------------YCQGLVQA- 568

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
             P   R H    Q  T      +++P+   I         +R   +  EG  L+ AD +
Sbjct: 569 INPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYS 628

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA ++ ++  + AF+   D++  T A  F V  +QVT   R+  K +   + Y 
Sbjct: 629 QIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYG 688

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                   ++    ++    A  +                                    
Sbjct: 689 ISDY---GLSRDIKISRKEAAEFIN----------------------------------- 710

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                  + +K+ +V E    L    +   ENG  +    R+         +KN      
Sbjct: 711 ------RYFEKYPKVKE---YLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKN------ 755

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG- 621
              R+         R  +N+                   +Q  + DI+   M+   K   
Sbjct: 756 --LRNYA------ERIAMNSP------------------IQGSAADIMKIAMIRVYKKLK 789

Query: 622 -----YDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
                  I+L VHDE++ E+P +  E    ++   M 
Sbjct: 790 ENNLKSRIILQVHDELLIESPYEEKEIVKEIVKSEME 826


>gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1]
 gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC]
          Length = 869

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 103/585 (17%), Positives = 186/585 (31%), Gaps = 76/585 (12%)

Query: 28  VCVILFAFGFD-DHPVELWDC--VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
             + L       D  V   D     D V+   LK+  +  D     +N   +   LK   
Sbjct: 324 PSLTLMGVALACDEQVYYVDIEHAQDDVITP-LKDFFKRKDTEFYGYNIKRDHHALK--- 379

Query: 85  NLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           N  I I      L LA      G   + + +     L     + GKE             
Sbjct: 380 NAGIHIDNITLDLALAEHLINGGAKISYQTLLVDHGLMESAGKYGKEWGQL--------S 431

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------PLSSKEQELWYLDQTINDR 195
           L     P     +  FGE+      + + + + L+         + E  L  +  TI   
Sbjct: 432 LPILKSPAKPAEY--FGEFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLENVLFTIERN 489

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +DV     L + +  E   L  ++ +L  G   + +  ++L   L+ + GL   D  
Sbjct: 490 GMPLDVEDLQELERTLSEELAILTDDIYTLA-GASFNIKSPKQLSDVLYNKLGLTPIDKA 548

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL +         ++                                 F    +
Sbjct: 549 RSTKAEVLEALLGEHEIVEKILA-------------------------------FRAIEK 577

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI- 369
                    P Q  P  SR H   +Q+ T        DP+   I         +R     
Sbjct: 578 LLSTYVKALPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFRD 637

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             +    + AD + IE R LA ++ ++    AFE+ ED++  T ++ F+V   +VTK QR
Sbjct: 638 TRQNNYFLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQR 697

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y   A     ++    ++++    L+      + +     F        
Sbjct: 698 MQAKTVNFGIIYGQQAY---GLSKILKISVSEAQKLIDA--YFDRYPAVARFIDETISQA 752

Query: 490 PEHAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
            E+      +G   ER+   W +  +SR +        A    I+   A + +       
Sbjct: 753 CENLRVKTLLGR--ERIIDNWTEFSNSRAAS----GRLAVNTRIQGSAAELIKLAMLQLA 806

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             ++K K    ++L     L++      +  + T  R +      
Sbjct: 807 DALEKRKLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAMI 851



 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 597 LTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVC 634
                +Q  + +++   M+    A         ++L +HDE++ 
Sbjct: 785 AVNTRIQGSAAELIKLAMLQLADALEKRKLRSRMLLQIHDELIF 828


>gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 914

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 95/524 (18%), Positives = 187/524 (35%), Gaps = 63/524 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +   +   D+  +++N        KA  NL I        +++A    L S+   +   +
Sbjct: 401 VVNFISQLDIKFISYN-------FKALLNLGISFKSMYMDMMIAYH--LISSQTKIDPII 451

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD----VTVTREIF 172
            ++     E K+  A F K                +     G     D    +    +++
Sbjct: 452 AITEYSKLEPKDFKATFGKVNVELITTQDFSKYLSD--ISIGILAIYDELNYLLKKEDLY 509

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           K L      E  L  +   +  +G  +DV      +  +D E  ++++ +     G   +
Sbjct: 510 KVL---MENEMPLIPVLSLMERKGIEIDVQYFKNYSVELDKELLRIEKAIYEEA-GEEFN 565

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L   LF++  L     T+T     +   + L      +                
Sbjct: 566 INSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNI---------------- 609

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                       R  L +   ++         P       SR H   +QI T      +S
Sbjct: 610 -----------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTSFNQIGTATGRLSSS 657

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           DP+   I         +R   IA EGK L+  D + +E RVL  M+ ++  ++A+   +D
Sbjct: 658 DPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 717

Query: 408 LYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           L+  T  R FN+A ++ V+++QR I K++  ++ Y         +A    + +   +  +
Sbjct: 718 LHDLTARRIFNLADSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYI 774

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           K     E++     F + + E   EH       G      K+      S+   + ++  +
Sbjct: 775 K--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAER 827

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
               T+  G A    K+  V +  + KDK ++ L+L     L++
Sbjct: 828 MAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIF 871


>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
 gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
          Length = 945

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 189/634 (29%), Gaps = 140/634 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  V  N  ++  +L       I +     T+V++       +        
Sbjct: 417 LKPLLESDAVLKVGQNIKYDLNILARQ---GIMVSPIDDTMVMSFCLDAGRS------ET 467

Query: 117 KLSSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L+   M+E  E  L+    K +       +              Y   D  VT  + + 
Sbjct: 468 GLAGHGMDELSERHLLHTTMKFKELCGTGKKAISFAEVPLADATRYAAEDADVTWRLHRL 527

Query: 175 LEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +P  + E          + L  +   +   G  VD      L+     +  +L+  +  
Sbjct: 528 FQPRLAGEGGTRIYQKVDRPLIPVVAMMERNGIKVDRERLSGLSTEFAAQIARLEGVIHE 587

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQAIQVFNNR 280
              G+  +    ++L   LF + G            +T Q VL        +   +    
Sbjct: 588 KC-GMSFTIGSPKQLGEVLFDKLGYKGGKKGKTGQYSTDQSVLEGLAAQGAEVATLVLEW 646

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            + S+                                            P   R H    
Sbjct: 647 RQLSK------------------------------LKSTYTDALQAAINPHTGRVHTSYS 676

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
            +        +++P+   I     I   +R   +A  G  L+ AD + IE R+ A MA  
Sbjct: 677 LVGAQTGRLSSNEPNLQNIPIRTEIGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMADV 736

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  GED++  T    F      V +D R   K +  A+ Y         +    
Sbjct: 737 PALKEAFAAGEDIHARTAMEMFGT----VDRDTRGRAKTINFAILYGIS---RWGLGGRL 789

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++ +                +A+       E  P       +I    E V+        
Sbjct: 790 GVSAD----------------EAQAMIDRYFERFP---GIQRYIHETLESVR-------- 822

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     + + +T+   K    R                      S ++   R  G+
Sbjct: 823 ---------ERGYSETLFGRKTWFPRI---------------------SSKNQAERQ-GS 851

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R+ +N   +         G   + I +A++R  +   +  A      ++L VHDE+V E
Sbjct: 852 ERAAINAPIQ---------GTSADIIKRAMAR--MMPALTEAGLGHVRMLLQVHDELVFE 900

Query: 636 TPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAE 666
            P  D E    ++  +M +    A    +PL  E
Sbjct: 901 LPQGDVEAAKPVIERVMATAAEPAVKLSVPLGVE 934


>gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
          Length = 885

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 102/639 (15%), Positives = 196/639 (30%), Gaps = 155/639 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           Q L+  LE+  V     +       L     L I  +     ++LA              
Sbjct: 364 QPLQTLLEDQAVNKNVFDLKRTIVGLHR---LGIKANNINYDMLLASYLVNNEN------ 414

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               +S  + E  +L   +      +      K    +    F       + +       
Sbjct: 415 ----NSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDEEIFFNHLAGKVLAIEALKPTL 470

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           L+ L+  EQ+  Y         +   +   G   D +    L        T+L+ ++  L
Sbjct: 471 LKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRLTELEADIY-L 529

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L   LF +  L     T+T       VL   K  +P   +V + R  
Sbjct: 530 EAGERFNINSPKQLGQILFEKLELPPIKKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQI 589

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +   +  L++ +  DG                               R H    Q 
Sbjct: 590 AKIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYQQT 617

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395
           +T      + DP+   I         +R   I S  +G      D + +E RVLA ++G+
Sbjct: 618 LTATGRLSSVDPNLQNIPVRLEEGKKIRKAFIPSNKDGYIF-SCDYSQVELRVLAHVSGD 676

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   +AF+TG D++  T  + F++  P +VT + R   K +   + Y         ++  
Sbjct: 677 ENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTTNMRRHAKAVNFGIVYGISDY---GLSKN 733

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       +        + +     +   +     A E  ++ T             
Sbjct: 734 LGISRKQAKEFIDN------YFEQYPKIKDYMDKEINFAREKGYVET------------- 774

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                   I  +RR +P ++ K           + RS       
Sbjct: 775 ------------------------IMHRRRYLPDIHAKNF---------NVRSFA----- 796

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
             R+ +N+                   +Q  + DI+   M+N  K          +++ V
Sbjct: 797 -ERTAINSP------------------IQGGAADIIKIAMINMQKKLDELNLKSKMLIQV 837

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           HDE++ + P  +      +   +M +       +PL A+
Sbjct: 838 HDELIFDVPADELETIKKVVPEVMQNAVH--LDVPLVAD 874


>gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
 gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
          Length = 909

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 169/561 (30%), Gaps = 66/561 (11%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
            + GI  Y E+   +  A   +   V L+ C     + Q       +     + + +  E
Sbjct: 349 KEAGISIYKENDA-MWVALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 407

Query: 77  RTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
                +   +           + A   N L S  +    A    S  +   KELI +   
Sbjct: 408 VKEHLSHLTIHEMTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSKKELIDKKHP 467

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLD 189
             T   L D  K          G          + +  +L  L         E    +  
Sbjct: 468 MVTDGVLSDAGKKIM-------GYEAYISREAIQPLSDKLTELEMMDLYREIEIPTMFAL 520

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  RG  VD          +     +L + +     G   +    ++L   LF    L
Sbjct: 521 HDMEVRGIHVDSKALKGYGDQLVGRIEELQESIYKEA-GEEFNINSPKQLGVVLFDHMKL 579

Query: 250 HLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+T       VL   + L P    +   R      +    + L   +  D R+  
Sbjct: 580 EGAKKTKTGYSTSVEVLEKIEHLYPIIPMILEYRQLTKLKSTYA-DGLANFIQDDQRI-- 636

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361
                                        H + +Q IT      +++P+   I     + 
Sbjct: 637 -----------------------------HGKFNQTITATGRISSTEPNLQNIPIRMELG 667

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +  EG   + AD + IE RVLA ++ ++  + A+E  +D++  T +  F +  
Sbjct: 668 RAIRKVFLPEEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPM 727

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT  QR   K +   + Y   A    +      ++       +        +   + F
Sbjct: 728 DEVTSTQRRDAKAVNFGIIYGLSAFGLSQ---DLKISRKQAQEYID--RYFAMYPRVKEF 782

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                +   E    D ++ T   R++     K S   +  N   +    +   G A    
Sbjct: 783 L----DGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQ-RNFGERVAMNSPIQGTAADII 837

Query: 542 KRRDVPLVYMKKDKNNLILML 562
           K   V +    K+K     +L
Sbjct: 838 KIAMVRVNMKLKEKQMKSRLL 858


>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
 gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
          Length = 875

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 105/647 (16%), Positives = 209/647 (32%), Gaps = 143/647 (22%)

Query: 35  FGFDDHPV-------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNL 86
           +  D+ PV       +++    +  + +  KE  E+ DV        F+    +      
Sbjct: 328 YYVDNEPVIFAIYTDKVY-ITRNVDIVKSFKEEFESKDVNK----LSFDIKPCIYHLMRY 382

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            I I      +V+      PS  +        K+     +  +++  +    +T     +
Sbjct: 383 GIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKSLEDITGKGRSKKTILESDE 442

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           +   N+   + +F      +     E    +      E  L  +   +   G CV     
Sbjct: 443 KEIDNYIVKYMMFTNKL-YEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             + ++ + E   ++  +E L  G   +    ++L   LF +  L +    +T   T Q 
Sbjct: 502 VEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL +          +   R  A +     ++ +V+ +  DG++                 
Sbjct: 561 VLEALSGRHEIIDYILRYRTIA-KLKTTYIDGMVDLIKEDGKI----------------- 602

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
                         H    Q I       +++P+   I         +R   + S+G  L
Sbjct: 603 --------------HTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSQGSVL 648

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RVLA +A ++  + AF+ G D++  T +  F V   +VT  QR+  K + 
Sbjct: 649 LDADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRSNAKAVN 708

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y  G  +         +                  E  EN+    +E   +  +ED
Sbjct: 709 FGIVYGIGDYSLS---KDLHITRKEAK------------EYIENYLDTYKEI--KQYMED 751

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
           +                            + + +TI        ++RR +P +       
Sbjct: 752 IVAIGK----------------------EKGYVETI-------MKRRRYIPEL------- 775

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-- 614
                    ++   R  G  R  LNT                   +Q  + DI+   M  
Sbjct: 776 -------KSKNYNVRSFGE-RVALNTP------------------IQGSAADIIKVAMVK 809

Query: 615 ----MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656
               +N       ++L VHDE++ + P+ + E    ++  +MT    
Sbjct: 810 FYNRLNEENLKAKLILQVHDELIVDCPEDEREKVLEIMKDVMTHAVD 856


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 97/636 (15%), Positives = 200/636 (31%), Gaps = 179/636 (28%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            E+ ++  ++H+      VL+     DI    +I    +A     PS    +   + L  
Sbjct: 384 FEDKNIKKISHDIKNVYVVLRKY---DIDAKNFIFDTKIASYLLEPSKSDYILREIILEK 440

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
             +                      N  +  E  ++   YC        EI+++L+    
Sbjct: 441 LSI----------------------NIDDSDEECKIKETYCIK------EIYEKLQKEIK 472

Query: 181 K----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +          E  L  +  ++   G+ VD      + +    E   L++E+  L  G  
Sbjct: 473 EANMEELFYNVELPLTKVLASMECEGFKVDKDRLTEIGEKFKAEIKMLEKEIHKLA-GED 531

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            + +  ++L   LF +  L +   T+T       VL   K   P   ++ + R      +
Sbjct: 532 FNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIDYRQITKLDS 591

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L   ++ D                                + H   +Q +T   
Sbjct: 592 TY-VEGLKHVIDED-------------------------------GKIHSSFNQTVTTTG 619

Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +++P+   I         +R   +A+ E   +  AD + IE RVLA +A ++  + A
Sbjct: 620 RLSSTEPNLQNIPIKHEMGREIRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDA 679

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+  +D++  T +  F V   +VT   R+  K +   + Y  GA +         ++   
Sbjct: 680 FKHHKDIHTITASEVFRVPVEEVTPLMRSNAKAVNFGIVYGIGAFSLS---KDINVSRKE 736

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T      + + + +   +     +    D F+                      
Sbjct: 737 AKEYIDT--YFSRYPNVKKYIDDIINKSEQ----DGFV---------------------- 768

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                            I  ++R +P +                R+ + R  G  R  +N
Sbjct: 769 ---------------TTIMNRKRYIPEI--------------QSRNRIVRSFGE-RLAMN 798

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVC- 634
           T                   +Q  + DI+   M++  +          ++L VHDE++  
Sbjct: 799 TP------------------IQGSAADIIKLAMVHVYEELIKRNLKSTLILQVHDELILN 840

Query: 635 ----ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
               E  +  +     +  +M         +PL+A+
Sbjct: 841 VYKDELEEVKQMVVEKMEGVMNLL------VPLEAD 870


>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 887

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 85/514 (16%), Positives = 157/514 (30%), Gaps = 130/514 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                + LE  +  E  L  +   + D G  VD                + ++    L  
Sbjct: 475 ELSDIESLELYTDLEIPLITILAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAG 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +    ++L+  LF    L     T+T         + L  +    F   + A R  
Sbjct: 535 DPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKKTDHPFLQHLLAHREY 594

Query: 288 VL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                 L  L+ ++  DGR+  T                                 Q + 
Sbjct: 595 SKMKSTLEGLIRSVGGDGRIHTT-------------------------------FKQTVA 623

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                 ++DP+   I         +RS  +  EG + L+ AD + IE RV+A ++ +   
Sbjct: 624 STGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGL 683

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A++ GEDL+    ++ F+V   +VT + R   K M   L Y   +     +A+   + 
Sbjct: 684 IQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSY---GLAAQLDIP 740

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                                           K        R  
Sbjct: 741 QGEA--------------------------------------------KSIMDSYFERFG 756

Query: 519 ELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            + N L    ++  ++G  + +  +RR +P +                            
Sbjct: 757 GVKNYLRSVVDEARKDGYTSTLFGRRRYLPEL---------------------------- 788

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIV 633
               T+T ++ RE      L   I Q  + DI+   M+   +        ++L VHDE+V
Sbjct: 789 ----TSTNRIARENAERAALNAPI-QGTAADIIKVAMVRVNRRLDSLKSRVLLQVHDELV 843

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGL--PLKA 665
            E    +      +  +++     A  L  PL+ 
Sbjct: 844 LEVAPGE---LEEVSRIVSEEMDGAISLRVPLEV 874


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 109/621 (17%), Positives = 201/621 (32%), Gaps = 148/621 (23%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            +  L LE    T+T       VL     + P   ++   R      +   +  L + + 
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILAYRQITKLQSTY-VIGLQDYIL 600

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DG++                               H    Q +T      + DP+   I
Sbjct: 601 ADGKI-------------------------------HTRYVQDLTQTGRLSSVDPNLQNI 629

Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T 
Sbjct: 630 PIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTA 689

Query: 414 ARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            R F +  A  VT + R   K +   + Y         +++  G+        + T    
Sbjct: 690 MRVFGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKTYIDT---- 742

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
             + +     +   EN    A +  ++                                 
Sbjct: 743 --YFERYPRIKAYMENVVREAKDKGYVE-------------------------------- 768

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                 + ++RR++P +              + R+   R     R+ +N+          
Sbjct: 769 -----TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP--------- 799

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DIL   M+N  KA         ++L VHDEIV E P+ +      
Sbjct: 800 ---------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKK 850

Query: 647 LYH-LMTSNPSWAKGLPLKAE 666
           L    M +    A  +PL  +
Sbjct: 851 LVKDTMEAAVDLA--VPLCVD 869


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 98/519 (18%), Positives = 172/519 (33%), Gaps = 142/519 (27%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           RE++  L      E  L  +   +  RG  +D A        V  E  +L  E+ +   G
Sbjct: 514 RELYNTL------ELPLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELDRLTAEVYA-AAG 566

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              + R  ++L   LF    L     T+    +T Q+ L            +   R +  
Sbjct: 567 TTFNIRSAQQLGDVLFKTLNLPSPRKTKGGQASTSQQTLEKLAGRHAVVDSILQFR-KLE 625

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     L+ L   ++  G                               R H   +Q  T
Sbjct: 626 KMRSTYLDPLPRLVDGQG-------------------------------RIHTTFNQKAT 654

Query: 345 HLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 +S+P+   I     +   +R+C IA  G+ LV AD + +E RVLA M+ +   L
Sbjct: 655 ATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALL 714

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  GED++  T A  +++   +V+ DQR   K +   L Y  GA   QK+     ++ 
Sbjct: 715 DAFRQGEDIHARTAALIYDLQAGEVSPDQRRNAKTINFGLIYGMGA---QKLGQELKIST 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                            +A+ F     E                             +  
Sbjct: 772 ----------------AEAKEFITRYFERLT-------------------------GLKA 790

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            +  +    ++  +     +  +RR +P +     +   +                 R  
Sbjct: 791 FYENVEATAKR--QGYVTTLGGRRRLLPDILSANGQAFALAR---------------RQA 833

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIV 633
           +NT                  ++Q  + DI+   M+         +    ++L VHDE++
Sbjct: 834 INT------------------VIQGSAADIIKLAMLAVAHDAELRRMDARLLLQVHDELL 875

Query: 634 CETPD-TDEFNASMLYHLMTSNPSWAKG-----LPLKAE 666
            ETP+ T E   + +  LM+S    A G     +PL  +
Sbjct: 876 LETPEATAEAAGARVAALMSSV---APGGETLSVPLVVD 911


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 105/622 (16%), Positives = 196/622 (31%), Gaps = 150/622 (24%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K      I  + +  + VL    GL     +    L    LS+ +  E   L   +   
Sbjct: 369 FKKVLEQPIATYDFKRSKVLLSHLGLDLPAASYDARLANYLLSTVEDNEMATLARLYTTI 428

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEP------LSSKEQE 184
             +T E +Y +          +   +    V V  +    +  +L         +  E  
Sbjct: 429 PLDTDEVVYGKGVKRAVPDKAVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELP 488

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+      + +   V   +L QE+  +  G V +    ++L   LF
Sbjct: 489 LANVLAKMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILF 547

Query: 245 LETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            +  L L     T+T       VL     + P   ++ + R      +   +  L + + 
Sbjct: 548 EKMQLPLHLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTY-VIGLQDYIM 606

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR                                H    Q +T      + DP+   I
Sbjct: 607 ADGR-------------------------------IHTRYLQDLTQTGRLSSVDPNLQNI 635

Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R     S +   L+ +D + IE RVLA ++G++  + AF+ G D++ +T 
Sbjct: 636 PIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 695

Query: 414 ARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            R F +  P  VT + R   K +   + Y         +++  G+        + T    
Sbjct: 696 MRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDF---GLSNNLGIPRKQAKAYIDTY--- 749

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                                      R   + + + +   +  
Sbjct: 750 -----------------------------------------FERYPGIKDYMERVVREAK 768

Query: 533 ENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
           + G    + ++RR +P +              + R    R     R+ +N+         
Sbjct: 769 DKGYVETLFKRRRQLPDI--------------NSRQFNVRSF-AERTAINSP-------- 805

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DIL   M+N  +A         ++L VHDEIV E P+ +     
Sbjct: 806 ----------IQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAAVK 855

Query: 646 ML-YHLMTSNPSWAKGLPLKAE 666
            L    M S  + A  +PL+ +
Sbjct: 856 ELVKETMESAVNLA--VPLRVD 875


>gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1040

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 160/499 (32%), Gaps = 117/499 (23%)

Query: 165  VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +   +  ++R+  L   E  L  L + + D G  VD  L    +Q +  E  + +     
Sbjct: 624  ILTEQVKYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTETAAFE 683

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               G   +    ++L+  LF + GL     T+T       + ++L       F   +   
Sbjct: 684  -AIGREVNLSSPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYF 742

Query: 285  RSAVLKLN---TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            R     L     L + +  DGR+  T                                 Q
Sbjct: 743  RDRSKLLQIVRNLGDRIAPDGRIHTT-------------------------------FGQ 771

Query: 342  IITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
             +       + DP+   I +       +R   IA      L+ AD + IE R++A ++G+
Sbjct: 772  TVAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGD 831

Query: 396  QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            +  + AF++GEDL+ +  A  F VAP  VT  QR   K     L Y   A     +A   
Sbjct: 832  EGLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAF---GLAGQL 888

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             ++     HL++T                                              S
Sbjct: 889  RISQGEAKHLMETYF--------------------------------------------S 904

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            R   + + L     +    G       RR                 LP  R+       N
Sbjct: 905  RFGAVRDYLEHIVSEARRVGYTETMWGRRRY---------------LPGLRATNRVVAEN 949

Query: 576  N-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              R+ LN   +         G   + + QA+ R    +  M A   G  I+L +HDE+V 
Sbjct: 950  ARRAALNAPIQ---------GSAADLMKQAMLR---VDAAMAAAGLGSRILLQIHDELVF 997

Query: 635  ET-PDTDEFNASMLYHLMT 652
            E  P   +    ++   MT
Sbjct: 998  EVAPGEVDALRRVVTEAMT 1016


>gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 169

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL+N ++   A N+ FER  L       +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYC 161
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y 
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYN 167


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
          Length = 880

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/619 (17%), Positives = 199/619 (32%), Gaps = 144/619 (23%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQSKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P  DE  A   ++
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVP-NDELTAIKKLV 852

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M +    A  +PL  +
Sbjct: 853 KDTMEAAVDLA--VPLCVD 869


>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
 gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
          Length = 874

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/638 (13%), Positives = 203/638 (31%), Gaps = 142/638 (22%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLP 106
           +P  +  A+ +      A++   E+ +  A   +      DI +      + +A     P
Sbjct: 344 IPTEV--AINSDMFKKWANDEKNEKWIFNAKQAIVSLGWNDISLRGVTFDIQIASYLIDP 401

Query: 107 S--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           S  + +    + +  S  ++  + +     KG+  +   +     H           K +
Sbjct: 402 SASSHEMADISNRKRSYTVKSDEAVYG---KGKKRQVPEEEIVAQHLVRKAAAINVLKEE 458

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +    +  ++ E     E  L  +   +   G  ++      + + +  + + +++E+  
Sbjct: 459 LESELKENEQFELFKDLEMPLSIVLGHMEMNGISINKEELLQMGETLSDKLSTMEKEIHE 518

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L  G+  +    ++L   LF +  L +   T+T       VL   +       ++   R 
Sbjct: 519 LA-GVEFNINSPKQLGEILFDKLQLPVVKKTKTGYSTSADVLEQLRDKHEIVEKILLYRQ 577

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++ ++                               +  + H   +Q
Sbjct: 578 L-GKLNSTYIEGLLKVIHQ------------------------------KSGKIHTIFNQ 606

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
            +T      +++P+   I         +R   +   E   +  AD + IE RVLA ++ +
Sbjct: 607 ALTQTGRLSSTEPNLQNIPIRLEEGRKIRRAFVPERENAVIFAADYSQIELRVLAHISND 666

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    AF+   D++  T    F+V+  +VT   R   K +   + Y        +     
Sbjct: 667 ENLTNAFKENMDVHTKTAMDVFHVSADEVTSLMRRTAKAVNFGIVYGISDYGLSQ---NL 723

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+        +        + D+    +   E+  E A  + ++                
Sbjct: 724 GITRKEAKKFID------RYFDSYPGVKEYMESIVEEARVNGYV---------------- 761

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                  +  +RR +P +  +           + RS        
Sbjct: 762 ---------------------TTMLHRRRYLPEITSRNF---------NLRSFA------ 785

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD--IVLTVH 629
            R+ +NT                   +Q  + DI+ + M+   +     G    ++L VH
Sbjct: 786 ERTAMNTP------------------IQGSAADIIKKAMVKMEEEMKEKGLKSTLLLQVH 827

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E    +      L   +M +  + A  +PLK +
Sbjct: 828 DELIFEVVQEEIETMKELVPKVMENAVNLA--VPLKVD 863


>gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus]
 gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus]
          Length = 943

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/639 (15%), Positives = 189/639 (29%), Gaps = 155/639 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+  LEN  V  +  N  F  ++LK     +I +   I  ++L         L       
Sbjct: 420 LQPILENPAVVKIGQNMKFNYSLLKRH---NINLSGKIFDVILEFYI-----LYGTTNYQ 471

Query: 117 KLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +     +E    I  F +  + +     +   N  +       Y    +    ++ + L
Sbjct: 472 NIKRFLNKETFNSILNFQQSYDNYNNYIVKEIKNIYQE----SLYAIQLILAIFDLHQIL 527

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P               E  L  +   I   G  +D  L  + +  ++V    L  +   
Sbjct: 528 WPQLYSNDKLKKIFQEIEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQ 587

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L  G   +   +++L+  L+ +  L +       + +T + VL       P    +   R
Sbjct: 588 LA-GTSFNLDSIKQLQEILYKKQKLPILKKTPSGSPSTNEEVLKKLSHKYPIPKIILKYR 646

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                                            S+                 +R H   +
Sbjct: 647 SL-------------------------------SKLKSTYTNKLISMVNTESNRIHTSYN 675

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q  T      +++P+   I         +R   IA     +V AD + IE R++A ++ +
Sbjct: 676 QTRTATGRLSSANPNLQNIPNRNHDGRKIRQAFIAPSHSVIVSADYSQIELRIMAHLSRD 735

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +  F +G+D++ TT +  F  +   VT +QR   K +   L Y   A    K  S T
Sbjct: 736 FKLINDFLSGKDIHTTTASEIFVTSLNLVTNEQRHQAKTINFGLIYGMSAFGLSKQLSVT 795

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                                          C   +K   +   
Sbjct: 796 -----------------------------------------------CYEAQKYVDRYFQ 808

Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           R   +   +    +   + G  + +  ++  +P +Y K                  +  G
Sbjct: 809 RYPGVMQYIQHIKDNVYKYGYVSTLEGRKLYLPNIYSKNLS---------------KKKG 853

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628
             R+ +N                     Q  + DI+ + M++             +++ V
Sbjct: 854 AERAAINAPM------------------QGSAADIIKKAMISINYWLKQDDIPVQMIMQV 895

Query: 629 HDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666
           HDE+V E  +   +     +  LM     +   +PLK +
Sbjct: 896 HDELVFEVQNNFIDTAIKQIKKLMEEC--FILDVPLKVD 932


>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 887

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/514 (16%), Positives = 157/514 (30%), Gaps = 130/514 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                + LE  +  E  L  +   + D G  VD                + ++    L  
Sbjct: 475 ELSDIESLELYTDLEIPLITILAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAG 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               +    ++L+  LF    L     T+T         + L  +    F   + A R  
Sbjct: 535 DPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKKTDHPFLQHLLAHREY 594

Query: 288 VL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                 L  L+ ++  DGR+  T                                 Q + 
Sbjct: 595 SKMKSTLEGLIRSVGGDGRIHTT-------------------------------FKQTVA 623

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                 ++DP+   I         +RS  +  EG + L+ AD + IE RV+A ++ +   
Sbjct: 624 STGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGL 683

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A++ GEDL+    ++ F+V   +VT + R   K M   L Y   +     +A+   + 
Sbjct: 684 IQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSY---GLAAQLDIP 740

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                                           K        R  
Sbjct: 741 QGEA--------------------------------------------KSIMDSYFERFG 756

Query: 519 ELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            + N L    ++  ++G  + +  +RR +P +                            
Sbjct: 757 GVKNYLRSVVDEARKDGYTSTLFGRRRYLPEL---------------------------- 788

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIV 633
               T+T ++ RE      L   I Q  + DI+   M+   +        ++L VHDE+V
Sbjct: 789 ----TSTNRIARENAERAALNAPI-QGTAADIIKVAMVRVNRRLDSLKSRVLLQVHDELV 843

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGL--PLKA 665
            E    +      +  +++     A  L  PL+ 
Sbjct: 844 LEVAPGE---LEEVSRIVSEEMDGAISLRVPLEV 874


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 91/567 (16%), Positives = 169/567 (29%), Gaps = 67/567 (11%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
              ++ F    D H V + +       P+ L E LEN       +++            L
Sbjct: 330 TADILKFGIQADGHFV-VINAEQINDYPE-LVEWLENDQTRKRVYDAK---KTYAEAHRL 384

Query: 87  DIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +I I      ++LA     P  ++  V     + +       E +  + KG   +   D 
Sbjct: 385 NIDIKNVSFDIMLASYILDPSRSIDDVYSV--VHNYGQNYVAEEVNIYGKGRKRQIPEDE 442

Query: 146 NKPNHREAWRLFGEYC---KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
               +  +             D     E F +L+   S E  L  +   + + G   DV 
Sbjct: 443 VLDTYIASILDAISESTPIMYD---QLEEFNQLDLFESLELPLARILGEMEELGIYTDVD 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261
               + + +  +   L   +     G   +    ++L   LF    L +   T+T     
Sbjct: 500 ELKEMEKEIQGKLDTLITRIHD-AAGEDFNINSPKQLGVVLFENLKLPVIKKTKTGYSTA 558

Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +   P    +   R                                 S+    
Sbjct: 559 VDVLEQLQGEHPIIDDILEYRQL-------------------------------SKLQST 587

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV-IASEG 373
                    +    R H   +Q +       + DP+   I         +R     A  G
Sbjct: 588 YIEGLQK-VIQNDHRIHTHFNQTLAQTGRLSSVDPNLQNIPVRLEEGRRIRKAFKPAEPG 646

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             ++ AD + IE RVLA +  ++  +KAF  G D++  T  + F V P +V    R   K
Sbjct: 647 NVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMRRQAK 706

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y        +   + G+        +       ++ D+    +    +  + A
Sbjct: 707 AVNFGIVYGISDYGLSQ---SLGITRKAAKQFID------DYLDSFPGVKQYMSDIVKDA 757

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
               ++ T   R ++      SR     +   +    T   G A    K   V      K
Sbjct: 758 KAKGYVETLLHR-RRYIPDITSRNFNRRSFAERTAMNTPIQGSAADIIKLAMVNFDKEIK 816

Query: 554 DKNN-LILMLPSGRSLVYRDVGNNRSY 579
           +K+    L+L     L++         
Sbjct: 817 NKDFHAHLLLQVHDELIFELPEEEVEA 843


>gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
 gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
          Length = 880

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/619 (17%), Positives = 198/619 (31%), Gaps = 144/619 (23%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+      + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRTTLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDKHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P  DE  A   ++
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVP-NDELTAIKKLV 852

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M +    A  +PL  +
Sbjct: 853 KDTMEAAVDLA--VPLCVD 869


>gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
 gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
          Length = 890

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 158/487 (32%), Gaps = 127/487 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  + Y    + + G CV         + + V+  KL+QE+   T     +    ++L
Sbjct: 492 DIEMPVIYSLYHMQEEGICVRREELRCYGERLKVQIDKLEQEIYQDT-ETEFNINSPKQL 550

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF    +     T+T   T   VL       P   +V + R      +    + L  
Sbjct: 551 GEILFDRMKMPGGKKTKTGYSTAADVLEKLAPEYPVVRKVLDYRQLTKLKSTYA-DGLAA 609

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  DGR+                               H   +Q IT      +++P+ 
Sbjct: 610 FIREDGRI-------------------------------HGTFNQTITATGRISSTEPNL 638

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I     +   +R   +  EG  L+ AD + IE RVLA M+G++  + A+   ED++  
Sbjct: 639 QNIPVRMELGREIRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAI 698

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F+V   +VT  QR   K +   + Y   A    +  S +                
Sbjct: 699 TASEVFHVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISR--------------- 743

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
               ++A  +     E +PE      F+    E  K                  Q + +T
Sbjct: 744 ----KEALEYINRYFETYPE---VKKFLDHLVELGK-----------------EQGYVET 779

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +  +RR +P +   K  N +                  R  +N+         
Sbjct: 780 -------MFGRRRPIPEL---KSANFMQRSF------------GERVAMNSP-------- 809

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET-PDTDEFNA 644
                     +Q  + DI+   M+         K    +VL VHDE++ ET  D  E   
Sbjct: 810 ----------IQGTAADIIKIAMIRVDQRLRKEKLRSRLVLQVHDELLIETWTDELEKVQ 859

Query: 645 SMLYHLM 651
            +L   M
Sbjct: 860 KVLEEEM 866


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 149/441 (33%), Gaps = 63/441 (14%)

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVD 200
            E  ++  ++    +   R + K+L     K          E  L  +   +   G  V+
Sbjct: 446 PEDKKVTYDHVARKIKAIRILSKQLSDNLEKNVQTKLFDEMELPLSIVLAEMELTGVKVN 505

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
                 + +   +    ++Q +  L  G   +    ++L   LF + G  +   T+T   
Sbjct: 506 DKRLMEMKEEFAIRLNDIEQRVYELA-GEKFNLNSPKQLGVILFEKMGYPVVKKTKTGYS 564

Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               VL   K+  P    +   R  A   +   +  L++ ++ +                
Sbjct: 565 TAVDVLEQLKEQAPIVEHILEYRQIAKIQSTY-IEGLLKVIDKE---------------- 607

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS- 371
                           + H    Q I       + DP+   I         +R   + S 
Sbjct: 608 --------------TGKIHTRYMQTIAQTGRLSSVDPNLQNIPIRLEEGRKIRQAFVPSH 653

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430
           EG K+  +D + IE RVL  ++ ++   +AF  G+D++ +T  R F + +P +V+ + R 
Sbjct: 654 EGWKIFASDYSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSPEEVSSEMRR 713

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y        +     G++       + T      + +     +   E+  
Sbjct: 714 RAKAVNFGIVYGISDYGLSQ---NLGISRKEAQRFIDT------YFEKYPGVKTYMEDIV 764

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
             A +  F+ T   R ++   + +SR   L +   +    T   G A    K   + +  
Sbjct: 765 REAKDKGFVETLFHR-RRYLPEINSRNFNLRSFAERTAINTPIQGSAADIIKIAMIKMDE 823

Query: 551 MKKDKNNLI-LMLPSGRSLVY 570
             K+      ++L     L++
Sbjct: 824 RLKESKLKATMLLQVHDELIF 844


>gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
 gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
          Length = 932

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 158/501 (31%), Gaps = 121/501 (24%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L  +  ++   G  VD A     ++ +  +  +L   +  L  G   +     +
Sbjct: 531 TKIEMPLVRVLASMERAGMYVDPARLAAQSEELSGQIAELSDRIRELAGGEEFNLSSPMQ 590

Query: 239 LKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           L   LF + GL    L +T      T  +VL    K       +   R R    +   L+
Sbjct: 591 LSRVLFDKLGLPTAGLKKTQRGYYSTNAKVLEDLAKDYEIVRLILEYRERTKIKSTY-LD 649

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           TL     +DGR+  T                                +Q IT      +S
Sbjct: 650 TLGALRETDGRVHTT-------------------------------YNQTITATGRLSSS 678

Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I     +   V+      EG   V  D + IE R+LA ++G++  + AF  GED
Sbjct: 679 NPNLQNIPTRSELGHAVKKAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVGAFNEGED 738

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            +  T AR F V   +VT   R+  K +   + Y   A          GL+      + +
Sbjct: 739 FHAETAARVFGVPVEEVTPQLRSRAKAVNFGIVYGQQA---------YGLSQALDIPMAE 789

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                + +  A    R   +     A +  +  T                          
Sbjct: 790 AREMIDAYFRAYPGVRTYLDETVAFAKQTGYAET-------------------------- 823

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                      +  +RR +P            L +P+ R          R+ +N   +  
Sbjct: 824 -----------MYGRRRPIPE-----------LRVPAQRMF------GERTAMNHPMQ-- 853

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASM 646
                  G   + I  A+ R       +        ++L VHDE+  E P  + +   +M
Sbjct: 854 -------GSAADIIKIAMVR---VAERLRTEGFAAKMILQVHDELDFECPVGEVDALVAM 903

Query: 647 LYHLMTSNPSWAKGLPLKAEG 667
           +   M         +PL A+ 
Sbjct: 904 VREEMEGVAQ--LRVPLIADA 922


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 101/612 (16%), Positives = 173/612 (28%), Gaps = 149/612 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +      AH+       L   +   + +    C   +A    +P       E L L  
Sbjct: 380 LADETKPKAAHDVKGPLLAL---WEHGLDLRGLTCDTAIAAYLAMPGQRSFPIEELVL-- 434

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
                         +   +E   D       +                RE+   LE    
Sbjct: 435 ----------RYLNRELRYETPADGQASLFDDVEAGMARDLALKAQAVRELADALERHLA 484

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                  ++  E  L  +   +   G   D     TL         +  +   +L  G  
Sbjct: 485 ARGGTRLMTEVELPLTRVLAEMEHTGIAADRQYFATLEAEFSAAAKQAVEAAHAL-VGEQ 543

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL- 289
            +    ++L+  LF++ GL      +T       +   L  Q        +   R     
Sbjct: 544 FNLGSPKQLQEILFVKLGLPKTKKIKTGYTTDADALAWLATQTDNELPAILLRHRDQTKL 603

Query: 290 --KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ +  DGR+  T                                +QI+    
Sbjct: 604 RATVEGLIKEIADDGRIHTT-------------------------------FNQIVAATG 632

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401
              +  P+   I         +R   I  +G   L+ AD + IE R++A ++G++  + A
Sbjct: 633 RLSSEKPNLQNIPIRTAEGRRIRKGFIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAA 692

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +G D +  T AR F + P QVT + RA  K M   L Y         +A    + +  
Sbjct: 693 FGSGHDFHQATAARVFGLPPDQVTPELRARIKAMNYGLAYGLSDF---GLAGQLNIPVAE 749

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              L +                                            +     + + 
Sbjct: 750 ARALKE--------------------------------------------EYFEEFAGVR 765

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             L++  +Q  ++G       RR                 LP                L 
Sbjct: 766 EYLNRVVDQARKDGYTETILGRRRY---------------LP---------------DLT 795

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETP 637
           +  RQ  RE      L   I Q  + DI+   M+   KA       ++L VHDE+V E  
Sbjct: 796 SDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLKVRKAMEGMRSRMLLQVHDELVFEVA 853

Query: 638 DTDEFNASMLYH 649
             +  +   L  
Sbjct: 854 PGELDDLIALVR 865


>gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
 gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
          Length = 1040

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 161/499 (32%), Gaps = 117/499 (23%)

Query: 165  VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +   +  ++R+  L   E  L  L + + D G  VD  L    +Q +  E  + +     
Sbjct: 624  ILTEQVKYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFE 683

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               G   +    ++L+  LF + GL     T+T       + ++L       F   +   
Sbjct: 684  -AIGREVNLSSPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYF 742

Query: 285  RSAVLKLNTLV---EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            R     L  +    + + SDGR+  T                                 Q
Sbjct: 743  RDRSKLLQVVRNLGDRIASDGRIHTT-------------------------------FGQ 771

Query: 342  IITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
             +       + DP+   I +       +R   IA      L+ AD + IE R++A ++G+
Sbjct: 772  TVAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGD 831

Query: 396  QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            +  + AF++GEDL+ +  A  F VAP  VT  QR   K     L Y   A     +A   
Sbjct: 832  EGLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAF---GLAGQL 888

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             ++     HL++T                                              S
Sbjct: 889  RISQGEAKHLMETYF--------------------------------------------S 904

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            R   + + L     +    G       RR                 LP  R+       N
Sbjct: 905  RFGAVRDYLEHIVSEARRVGYTETMWGRRRY---------------LPGLRATNRVVAEN 949

Query: 576  N-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              R+ LN   +         G   + + QA+ R    +  M A   G  I+L +HDE+V 
Sbjct: 950  ARRAALNAPIQ---------GSAADLMKQAMLR---VDAAMAAAGLGSRILLQIHDELVF 997

Query: 635  ET-PDTDEFNASMLYHLMT 652
            E  P   +    ++   MT
Sbjct: 998  EVAPGEVDALRRVVTEAMT 1016


>gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a]
 gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a]
          Length = 884

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 83/498 (16%), Positives = 145/498 (29%), Gaps = 122/498 (24%)

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           D  + R     L  L   E  L  +   +   G   D      L +    E T +  +  
Sbjct: 469 DADLERRSAAVL--LRDMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAH 526

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            +  G   +    ++L+  LF + GL      +T       +   L  Q+       +  
Sbjct: 527 EI-VGRTFNLGSPKQLQQILFDDLGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLR 585

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            R                            +R       + P   +    R H   +Q+I
Sbjct: 586 HRD--------------------------VARLKTVVDSLLPM--IDDAGRIHTTFNQMI 617

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397
                  ++DP+   I         +R   +   G   L+ AD + IE R++A ++G++ 
Sbjct: 618 AATGRLSSTDPNLQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDEG 677

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF +GEDL+    A +F +  ++V  + R   K M   L Y   A     +AS  G+
Sbjct: 678 LIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAF---GLASQLGI 734

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             +                                              ++       R 
Sbjct: 735 APDEA--------------------------------------------REHMDAYFGRF 750

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             + + L    E+   +G       RR                 LP              
Sbjct: 751 GGVRDFLRGVVERARRDGYTETMLGRRRY---------------LPDL------------ 783

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
               T+     R+      L   I Q  + DI+   M+   +A         ++L VHDE
Sbjct: 784 ----TSDNAQRRQMAERMALNAPI-QGSAADIIKIAMLGVDRALRAGGHASRLLLQVHDE 838

Query: 632 IVCETPDTDEFNASMLYH 649
           +V E    +      L  
Sbjct: 839 LVLEIAPGEYDAVEALVR 856


>gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS]
 gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS]
          Length = 880

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/619 (17%), Positives = 200/619 (32%), Gaps = 144/619 (23%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     ++  ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVNVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +   A VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDRAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P  DE  A   ++
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVP-NDELTAIKKLV 852

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M +    A  +PL  +
Sbjct: 853 KDTMEAAVDLA--VPLCVD 869


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/517 (15%), Positives = 154/517 (29%), Gaps = 136/517 (26%)

Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210
             G   + R ++  L  L             E  L  +   +   G+ VD        + 
Sbjct: 421 WAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKE 480

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNK 267
           ++ +  KL+ ++  +  G   +    ++L   LF +  L +   T+T       VL    
Sbjct: 481 IESKLLKLESQIYQIA-GEWFNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELY 539

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   + + RM                                     +   +    
Sbjct: 540 DKHDIIPLILDYRMYTKILTT------------------------------YCQGLVQA- 568

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
             P   R H    Q  T      +++P+   I         +R   +  EG  L+ AD +
Sbjct: 569 INPVTGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYMLIDADYS 628

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA ++ ++  + AF+   D++  T A  F V  +QVT   R+  K +   + Y 
Sbjct: 629 QIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYG 688

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                   ++    ++    A  +                                    
Sbjct: 689 ISDY---GLSRDIKISRKEAAEFIN----------------------------------- 710

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                  + +K+ +V E    L    +   ENG  +    R+         +KN      
Sbjct: 711 ------RYFEKYPKVKE---YLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKN------ 755

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG- 621
              R+         R  +N+                   +Q  + DI+   M+   K   
Sbjct: 756 --LRNYA------ERIAMNSP------------------IQGSAADIMKIAMIRVYKKLK 789

Query: 622 -----YDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
                  I+L VHDE++ E+P +  E    ++   M 
Sbjct: 790 ENNLKSRIILQVHDELLIESPYEEKEIVKEIVKSEME 826


>gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
 gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
          Length = 912

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 151/399 (37%), Gaps = 45/399 (11%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L  +   +  +G  +DV      +  +D E  ++++ +     G   +    +
Sbjct: 510 LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEA-GEEFNINSPK 568

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF++  L     T+T     +   + L      +                     
Sbjct: 569 QLGDVLFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                  R  L +   ++         P       SR H   +QI T      +SDP+  
Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I         +R   +A EGK L+  D + +E RVL  M+ ++  ++A++  +DL+  T
Sbjct: 661 NIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKDLHDLT 720

Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             R FN++ ++ V+++QR I K++  ++ Y         +A    + +   +  +K    
Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E++    +F R + E   EH       G      K+      S+   + ++  +    T
Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +  G A    K+  V +  + KDK ++ L+L     L++
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIF 869


>gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG]
 gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF]
          Length = 914

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 108/616 (17%), Positives = 178/616 (28%), Gaps = 145/616 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + +   V H++     +++      + +        L      P       +AL L  
Sbjct: 400 LGDPERPKVMHDAK---GLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALSLEY 456

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
                G+EL+                  +     R      +  + +   +  RL     
Sbjct: 457 L----GRELV-----PAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGA 507

Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              L+  E     L   +   G   D      + +       +  +E  +   G   +  
Sbjct: 508 EGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREAHA-AVGHEFNLG 566

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKL 291
             ++L+  LF    L     T+T       S   L  Q      V   R R        +
Sbjct: 567 SPKQLQEVLFGGLNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTV 626

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++++  DGR+  T                                +Q +       +
Sbjct: 627 EGLIKSIAPDGRIHTT-------------------------------FNQTVAATGRLSS 655

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +DP+   I         +R   +  EG + L+ AD + IE RV+A ++ ++  + AF +G
Sbjct: 656 TDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSG 715

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+ T     FNV P  V  + R   K M   L Y   A    +     G+       L
Sbjct: 716 EDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEAGEARAL 772

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           + T                                               R   + + LH
Sbjct: 773 MDT--------------------------------------------YFERFGGVRDYLH 788

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +  E+    G       RR                 LP                LN+  R
Sbjct: 789 RVVEEARATGYTATMLGRRRY---------------LP---------------DLNSDNR 818

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE-TPD 638
           Q  RE      L   I Q  + DI+   M+   +A         ++L VHDEIV E  P 
Sbjct: 819 Q-RREAAERMALNAPI-QGTAADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELAPG 876

Query: 639 TDEFNASMLYHLMTSN 654
             E    +L   M + 
Sbjct: 877 EREPVEEILRREMAAA 892


>gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
 gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
          Length = 866

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/503 (15%), Positives = 151/503 (30%), Gaps = 130/503 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G+ V+  +   L+     E  +  +E+  L      +    ++L
Sbjct: 467 DIELPLETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   K   P   ++   R   S+     +  L  
Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T                                +Q +T      +++P+ 
Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613

Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I   EG  L+ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 614 QNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT   R+  K +   + Y  G  +  +      ++            
Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ---DLNISRKEA-------- 722

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                               K+       R  ++   + +   +
Sbjct: 723 ------------------------------------KEYMDIYFERYPKIKEYISKVIHE 746

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G  +    RR    +      N ++  L              R  +N         
Sbjct: 747 AQTKGYVLTMLNRRRY--IPEANSSNKIVKAL------------GERLAMNAP------- 785

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFN 643
                      +Q  + DI+   M+N             ++L VHDE++      + +  
Sbjct: 786 -----------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIV 834

Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666
             +L   M +       +PL  +
Sbjct: 835 KKLLKEEMENTIK--LSVPLDVD 855


>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 838

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 106/662 (16%), Positives = 204/662 (30%), Gaps = 168/662 (25%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
           A+       A   D   V   +  +  V  + ++E L             F+   L    
Sbjct: 317 ADLFSTPEVAVIHDFERVIAINEGYVEVDFKEIEEFLPEKGKIYT-----FDLKSLYHKV 371

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
              +    +I                 V E L    QK    K+++ +            
Sbjct: 372 GEKLRNFSFIDLS--------------VCEYLLNPLQKDYSSKDILKK------------ 405

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYC 198
                   +     +Y    + + +EI   L+         S E  L ++   +  RG  
Sbjct: 406 ---RLGVVSLEEVKDYVHYTLDIGKEILNELKKEGLENLYESIEHPLTFVLYKMEKRGVL 462

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            D        + +D +  ++++++  +  G   +    ++L   LF +  L     T++ 
Sbjct: 463 FDKEYLENFGKELDRKSKEIEKKIFEIA-GEKFNLNSPKQLSKILFEKLKLKPLKKTKSG 521

Query: 259 CQRVLSSNKKL----TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
               + +   L       A  +   R + ++     +  +++ M+ DGR+R T    G  
Sbjct: 522 YSTDVETLTALALKGHKIAELLLEYR-KLTKLNSTFVKGILKHMDEDGRVRTTFIQTG-- 578

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVI 369
                                        T      +++P+   +     IS  +R  V 
Sbjct: 579 -----------------------------TATGRLSSAEPNLQNLPVSDEISKKIRYAVT 609

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A  G  LV AD + IE R+LA ++ ++  L+A+  G D++  T +  F ++  +V +  R
Sbjct: 610 APAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFGISAEEVDERLR 669

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
            I K +   + Y         ++   G+++      +      + + +     +   E  
Sbjct: 670 RIAKTVNFGIIYGMSP---HGLSERLGISVEEAEKYI------DRYFEKFPKVKEYIE-- 718

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                                           N L +A+E+     K I  RKR      
Sbjct: 719 --------------------------------NTLREAYEK--GYVKTIFGRKRP----- 739

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                       LP  +S             N   R                +Q  + DI
Sbjct: 740 ------------LPELKSS------------NKNIRSFGERAA-----VNATIQGTAADI 770

Query: 610 LAEGMMNA----TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           +   M+       K G  +VL VHDEIV E   +  E    ++   M +       +PL 
Sbjct: 771 MKLAMVKLYKKLEKLGAYMVLQVHDEIVIEALEEKTEEIMKIVKETMENVVE--FSVPLT 828

Query: 665 AE 666
            +
Sbjct: 829 VD 830


>gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 881

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 102/639 (15%), Positives = 192/639 (30%), Gaps = 149/639 (23%)

Query: 63  NTDVTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---L 118
           N +   V+ N    R  +        I  + +  T VL    G+  +  A    L    L
Sbjct: 346 NQETIYVSQNPDLLRQPLFTKVLEKPILTYDFKRTKVLLSHLGVEISEAAFDARLANYLL 405

Query: 119 SSQKMEEGKELIAR------FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           S+    E   +               +     R  P     +           T    + 
Sbjct: 406 SNVDDNELATIARLHTSISLESDEAVYGKGVKRAFPAKDLLFAHLARKVAVLATSKPVML 465

Query: 173 KRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           ++L            E  L  +   +   G  V+      + +        L QE+  L 
Sbjct: 466 EKLAENGQSDLYYKIELPLANVLAKMEIAGIKVNKLTLMEMAEQNRNIIDALTQEIYDLA 525

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH--LEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
            G   +    ++L + LF +  L   +   T+T       VL     + P   ++ + R 
Sbjct: 526 -GEEFNINSPKQLGSILFEKMQLPLTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQ 584

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                +   L  L + +  DG++                               H    Q
Sbjct: 585 ITKLQSTY-LIGLQDYIMEDGKI-------------------------------HTRYVQ 612

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
            +T      ++DP+   I         +R     S +   L+ +D + IE RVLA ++G+
Sbjct: 613 DLTQTGRLSSTDPNLQNIPIRMEQGRLIRKAFTPSSDDWLLLSSDYSQIELRVLAHISGD 672

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +  + AF    D++  T  R F +     VT + R   K +   + Y         +++ 
Sbjct: 673 EHLIAAFNDNADIHTATAMRVFGIEKEADVTANDRRNAKAVNFGIVYGISDF---GLSNN 729

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       + T      + +     +   +     A +  ++               
Sbjct: 730 LGISRQKARDYIDT------YFERYPGIKKYMDAVVREAKDKGYVE-------------- 769

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                   + ++RR++P +              + R+   R   
Sbjct: 770 -----------------------TLFKRRRELPDI--------------NSRNFNVRSF- 791

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
             R+ +N+                   +Q  + DIL   M+N  KA         ++L V
Sbjct: 792 AERTAINSP------------------IQGSAADILKIAMINLDKALVDGEFKAKMLLQV 833

Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           HDEIV E P  +      L   +M      A  +PL+A+
Sbjct: 834 HDEIVLEVPKQELAAVRQLVKEIMEDAVDLA--VPLRAD 870


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 103/667 (15%), Positives = 207/667 (31%), Gaps = 162/667 (24%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVM------------PQVLKEALENTDVTIVAHNSYFE 76
            +   AF F  + V   D      +               +K+ L       +   S + 
Sbjct: 289 EIKKIAFSFGSNTVY-IDIFQIEDLKEIFEKEEFEFTTHEIKDFLVKLSYKGIECKSKYI 347

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKE--LIAR 132
            T + A   L+     +    VL +     +PS  +  G+      +K+EE +E  L   
Sbjct: 348 DTAIMAYL-LNPSESNYDLDRVLKKYLKVDVPSYEEVFGK--GRDKKKLEEIREDVLADY 404

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            C           +  + RE    F E          ++ K L      E  L  + +++
Sbjct: 405 ICS-------RCVHLFDLREKLMNFIE--------EMDMKKLL---LEIEMPLVEVLKSM 446

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G+ +D  +   L+Q +D    ++  ++     G   +    ++L  +LF +  L + 
Sbjct: 447 EVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVI 505

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
             T+T         ++L P                        + ++        +++  
Sbjct: 506 KKTKTGYSTDSEVLEQLVP----------------------YNDVVSD------IIEYRQ 537

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
            ++        F P      +R H    Q++T      +++P+   I         +R  
Sbjct: 538 LTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRA 596

Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            I   +   +V AD + IE RVLA ++G++  +++F   ED+++ T A  F V   +VT 
Sbjct: 597 FIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTP 656

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y         ++    ++       +        + +     +   
Sbjct: 657 EMRRAAKAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYI 707

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           E     A E+ ++                                       I  +RR +
Sbjct: 708 EKIVRFAKENGYV-------------------------------------TTIMNRRRYI 730

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
           P +  +                             T   Q  R            +Q  +
Sbjct: 731 PEINSRNF---------------------------TQRSQAERLAMNAP------IQGSA 757

Query: 607 RDILAEGMMNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAK 659
            DI+   M+         +    ++L VHDE+V +T  D  +    +L   M +      
Sbjct: 758 ADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVKKILKENMENVIK--L 815

Query: 660 GLPLKAE 666
            +PL  E
Sbjct: 816 KVPLVVE 822


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 91/504 (18%), Positives = 159/504 (31%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G  VD+         V  +  +L + +     G   + R  ++L
Sbjct: 488 DLEIPLIPVLVSMEQAGIGVDLDAFAGFLDDVSTQLDELTRSIIRHA-GEPFNIRSSQQL 546

Query: 240 KTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
              LF +  +   + T T    T  +VL + +   P    +   RM     +   L  L 
Sbjct: 547 AAILFDKLDIKEGNKTATGQRSTANQVLEAIRSRHPIVEDILEYRMLEKLRSTY-LEPLP 605

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + +  D RL                               H   +Q+ T      +S P+
Sbjct: 606 KLVGEDSRL-------------------------------HTHFNQLATATGRLSSSQPN 634

Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I         +R+C IA  G  L  AD + IE RVLA  +G+   + AF   ED++ 
Sbjct: 635 LQNIPIRGKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHT 694

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T A   +  P  V  D+R   K +   L Y  G    QK+A    + +N     ++   
Sbjct: 695 RTAALLTDKQPQDVLADERRNAKTINFGLIYGMGP---QKLARELDITVNQAKEFIE--- 748

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                    +   +++ L        + 
Sbjct: 749 -----------------------------------------RYFDKLATLKAYYDTIVKD 767

Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
              +G    +A +RR +P ++ +                                 Q  R
Sbjct: 768 AESHGFVTTLAGRRRLLPELHSRN---------------------------TQLVSQARR 800

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTD-EF 642
           +          ++Q  + DI+   M+      +    G  ++L VHDE++ E P+     
Sbjct: 801 Q------AVNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQVHDELIIEAPEASIRP 854

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
               L  +M S    A  +PLK +
Sbjct: 855 AGERLKTIMQSVADLA--VPLKVD 876


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/619 (17%), Positives = 198/619 (31%), Gaps = 144/619 (23%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIEVVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGTKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647
                 +Q  + DIL   M+N  KA          +L VHDEIV E P  DE  A   ++
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKCLLQVHDEIVLEVP-NDELTAIKKLV 852

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M +    A  +PL  +
Sbjct: 853 KDTMEAAVDLA--VPLCVD 869


>gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
          Length = 882

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 177/497 (35%), Gaps = 48/497 (9%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           LK    L     + +  +++A         +      +   + + E ++++    K ET 
Sbjct: 385 LKELLKLGFSFQKPVYDMMIAYHLVSSQTKEDYTSIGQYYLKTIAEDEKIVFAKQKIETL 444

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                 N    R                 +E+   L      E  L  +  ++  +G  +
Sbjct: 445 SIDSYGNFLLKRSQILYSCLDSLEKDLKEKELENVLW---ETELPLIPVLASMEKQGIKI 501

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D       +  ++ +   L++E+     G   +    ++L   LFL+  L     T+T  
Sbjct: 502 DRKYFQKYSLELNEKLVLLEKEIWKEA-GEEFNINSPKQLGEILFLKLNLPTGKKTKTGF 560

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
              +   + L+ Q  Q+  N +                           ++   ++    
Sbjct: 561 STDVEVLENLSSQGFQIATNLL---------------------------EYRKLAKLKNT 593

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374
                P        R H    QI T      +SDP+   I         +R   IA +G 
Sbjct: 594 YVDPIPKMV-KFGDRIHTCYHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGW 652

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGK 433
           KL+  D + +E RVLA ++ ++  +KA++  +DL+  T  + F +    +V+++QR + K
Sbjct: 653 KLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIFELEEKEEVSREQRTMAK 712

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           ++  ++ Y         +A   G+++   A  +K     E++     F   + E   +H 
Sbjct: 713 IINFSIIYGKTPF---GLAKELGISVKDAAEYIK--RYFEQYPRVAQFETEIIEFAEQHG 767

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             + + G      K+     HS+   + N+  +    T+  G A    K+  + +     
Sbjct: 768 YVETYFGR-----KRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILKKVMIKIYSWLL 822

Query: 554 DKNNLILMLPSGRSLVY 570
            K ++ L+L     L++
Sbjct: 823 GKTDIYLLLQVHDELIF 839


>gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11]
          Length = 912

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 151/399 (37%), Gaps = 45/399 (11%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L  +   +  +G  +DV      +  +D E  ++++ +     G   +    +
Sbjct: 510 LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEA-GEEFNINSPK 568

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF++  L     T+T     +   + L      +                     
Sbjct: 569 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                  R  L +   ++         P       SR H   +QI T      +SDP+  
Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I         +R   +A EGK L+  D + +E RVL  M+ ++  ++A++  +DL+  T
Sbjct: 661 NIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKDLHDLT 720

Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             R FN++ ++ V+++QR I K++  ++ Y         +A    + +   +  +K    
Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E++    +F R + E   EH       G      K+      S+   + ++  +    T
Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +  G A    K+  V +  + KDK ++ L+L     L++
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIF 869


>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 886

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 106/664 (15%), Positives = 201/664 (30%), Gaps = 159/664 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           FA           D       P  LKE LE++ V     +    RT     + L I    
Sbjct: 343 FALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAEG 397

Query: 93  WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               L+LA        ++              ++   E+  +            +N    
Sbjct: 398 LSFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDLEVYGKG-----------KNAKIP 446

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201
            +    F         +       L+ L   EQ+  Y         +   +   G  V  
Sbjct: 447 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 506

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260
           +    L     V   +L++++     G   +    ++L   LF + GL +   T+T    
Sbjct: 507 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 565

Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL+  K+ +P    +   R   S+     +  L++ ++                   
Sbjct: 566 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDE------------------ 606

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                       R  R H    Q +T      + DP+   I         +R   + S  
Sbjct: 607 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSP 654

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   +VT  QR  
Sbjct: 655 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 714

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y         ++    ++       +  N   +++   + +  W       
Sbjct: 715 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFI--NEYFDQYPGIQAYMDW------- 762

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550
                                              A +   E G A  I  +RR +P ++
Sbjct: 763 -----------------------------------AVKDAREKGYAETIMHRRRYLPDIH 787

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
            K           + RS         R+ +N+                   +Q  + DI+
Sbjct: 788 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 814

Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
              M+N  K          +V+ VHDE++ + P  +      +   +M +       +PL
Sbjct: 815 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 872

Query: 664 KAEG 667
            A+ 
Sbjct: 873 VADA 876


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 899

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 198/621 (31%), Gaps = 148/621 (23%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K      I  + +  + VL    GL     +    L    LS+ +  E   L   +   
Sbjct: 382 FKKVLEQPIATYDFKRSKVLLSHLGLDLPAASYDARLANYLLSTVEDNEMATLARLYTTI 441

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEP------LSSKEQE 184
             +T E +Y +          +   +    V V  +    +  +L         +  E  
Sbjct: 442 PLDTDEVVYGKGVKRAVPDKAVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELP 501

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+      + +   V   +L QE+  +  G V +    ++L   LF
Sbjct: 502 LANVLAKMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILF 560

Query: 245 LETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            +  L L     T+T       VL     + P   ++ + R      +   +  L + + 
Sbjct: 561 EKMQLPLHLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTY-VIGLQDYIM 619

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR                                H    Q +T      + DP+   I
Sbjct: 620 ADGR-------------------------------IHTRYLQDLTQTGRLSSVDPNLQNI 648

Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R     S +   L+ +D + IE RVLA ++G++  + AF+ G D++ +T 
Sbjct: 649 PIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 708

Query: 414 ARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            R F +  P  VT + R   K +   + Y         +++  G+        + T    
Sbjct: 709 MRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDF---GLSNNLGIPRKQAKAYIDT---- 761

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                                + +++  +      + +  +   
Sbjct: 762 -------------------------------------YFERYPGIKAYMERVVREAKD-- 782

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           +     + ++RR +P +  ++          + RS         R+ +N+          
Sbjct: 783 KGYVETLFKRRRQLPDINSRQF---------NLRSFA------ERTAINSP--------- 818

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DIL   M+N  +A         ++L VHDEIV E P  +      
Sbjct: 819 ---------IQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPSHELAAVKE 869

Query: 647 L-YHLMTSNPSWAKGLPLKAE 666
           L    M S  + A  +PL+ +
Sbjct: 870 LVKETMESAVNLA--VPLRVD 888


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLGSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P+ +      L  
Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853

Query: 650 -LMTSNPSWAKGLPLKAE 666
             M +    A  +PL  +
Sbjct: 854 DTMEAAVDLA--VPLCVD 869


>gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 913

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/617 (17%), Positives = 179/617 (29%), Gaps = 134/617 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + +     V HN+      L+        +        LA     P       +AL +  
Sbjct: 400 IADPARPKVMHNAK---DALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALSVEY 456

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 +EL+     G+      +  + +   A            T   E     E L  
Sbjct: 457 LH----RELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHD 512

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E     L   +   G   D A   ++  +      +  +E  + T G   +    ++L+
Sbjct: 513 MELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHA-TVGHEFNLGSPKQLQ 571

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKLNTLVEA 297
              F E  L     T+T       +   L  Q      V   R R        +  L++ 
Sbjct: 572 EVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPVIMLRHREQARLRSTVEGLIKT 631

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           + +DGR+  T                                 Q +       ++DP+  
Sbjct: 632 VAADGRIHTT-------------------------------FSQTVAATGRLSSTDPNLQ 660

Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            +         +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T
Sbjct: 661 NVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNT 720

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             ++ F VA ++V  + R   K M   L Y   A    +      +       L+ T   
Sbjct: 721 VASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAGEARALMDTYF- 776

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                       R   + + L    ++ 
Sbjct: 777 -------------------------------------------ERFGGVRDYLRHVVDEA 793

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G       RR                 LP                LN+  RQ  RE 
Sbjct: 794 RATGYTATMLGRRRY---------------LP---------------DLNSDNRQ-RREA 822

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                L   I Q  + DI+   M+   +A         ++L VHDEIV E    +     
Sbjct: 823 AERMALNAPI-QGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERDEVE 881

Query: 646 MLYHL-MTSNPSWAKGL 661
            +    M+S    +  L
Sbjct: 882 TIVRREMSSAVELSAPL 898


>gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 889

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/671 (16%), Positives = 203/671 (30%), Gaps = 160/671 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           FA           D       P  LK  LE++ V     +    RT     + L I    
Sbjct: 346 FALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAES 400

Query: 93  WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               L+LA        ++              ++   E+  +            +N    
Sbjct: 401 LTFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDLEVYGKG-----------KNAKIP 449

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201
            +    F         +       L+ L   EQ+  Y         +   +   G  V  
Sbjct: 450 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 509

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260
           +    L     V   +L++++     G   +    ++L   LF + GL +   T+T    
Sbjct: 510 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 568

Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL+  K+ +P    +   R   S+     +  L++ ++                   
Sbjct: 569 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDK------------------ 609

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIAS-E 372
                       R  R H    Q +T      + DP+   I +       +R   + S  
Sbjct: 610 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPARTEEGKQIRKAFVPSSP 657

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   +VT  QR  
Sbjct: 658 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 717

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y         ++    ++       +      E +E       +M      
Sbjct: 718 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFID-----EYFEQYPGIQAYM------ 763

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550
                                             +A +   E G A  I  +RR +P ++
Sbjct: 764 ---------------------------------DRAVKDAREKGYAETIMHRRRYLPDIH 790

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
            K           + RS         R+ +N+                   +Q  + DI+
Sbjct: 791 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 817

Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
              M+N  K          +V+ VHDE++ + P  +      +   +M +       +PL
Sbjct: 818 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 875

Query: 664 KAE-GYESKRY 673
            A+ G+    Y
Sbjct: 876 VADAGWGHDWY 886


>gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638]
 gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638]
 gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68]
          Length = 231

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 11/236 (4%)

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
             AF   A    L+L+  A+    N   +   +A+++     +    + + +  +  AC+
Sbjct: 1   MSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSER-VFIACD 59

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +K+ WR+ H    + W EL +     I   +     K      + +++D   L + LPS
Sbjct: 60  SLKRLWRRAHPATCDFWYELERTVRTAIATPQ-----KTLYCGYLKIRRDGAWLRIQLPS 114

Query: 565 GRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           GR++ Y        N +Y+  N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     
Sbjct: 115 GRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIED 174

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           AGY IVLTVHDEI+ E PD+ +++A  +  L+ + P WA  +PL A G+ES RYRK
Sbjct: 175 AGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/623 (15%), Positives = 201/623 (32%), Gaps = 111/623 (17%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVM------------PQVLKEALENTDVTIVAHNSYF- 75
            +   AF F +  V   D      +               +K+ L       +   S + 
Sbjct: 328 EIKKIAFSFGEDTVY-IDVFQIEDLKEIFEKEEFEFTTHEIKDFLVKLSYKGIECKSKYI 386

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKE--LIA 131
           +  V+    N       +    VL +     +PS  +  G+      +K+EE  E  L  
Sbjct: 387 DTAVMAYLLN--PSESNYDLDRVLKKYLKVDVPSYEEVFGK--GRDKKKLEEIGEDILAD 442

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             C           +  + RE    F E          ++ K L      E  L  + + 
Sbjct: 443 YICS-------RCVHLFDLREKLMNFIE--------EMDMKKLL---LEIEMPLVEVLKL 484

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G+ +D  +   L+Q +D    ++  ++     G   +    ++L  +LF +  L +
Sbjct: 485 MEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPV 543

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
              T+T         ++L P                        + ++        +++ 
Sbjct: 544 IKKTKTGYSTDSEVLEQLVP----------------------YNDVVSD------IIEYR 575

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366
             ++        F P      +R H    Q++T      +++P+   I         +R 
Sbjct: 576 QLTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRR 634

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             I   +   +V AD + IE RVLA ++G++  +++F   ED+++ T A  F V   +VT
Sbjct: 635 AFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVT 694

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K +   + Y         ++    ++       +        + +     +  
Sbjct: 695 PEMRRAAKAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEY 745

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            E     A E+ ++ T   R ++   + +SR     ++  +        G A    K   
Sbjct: 746 IEKIVRFAKENGYVTTIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAM 804

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           V +      ++   L L S   L   D     +Y +                       +
Sbjct: 805 VKVY-----EDFKKLQLKSQLILQVHDELVVDTYKDEVD--------------------I 839

Query: 606 SRDILAEGMMNATKAGYDIVLTV 628
            + IL E M N  K    +V+ +
Sbjct: 840 VKKILKENMENVIKLKVPLVVEI 862


>gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
 gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
          Length = 916

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/524 (17%), Positives = 189/524 (36%), Gaps = 63/524 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L + +   DV  +++N        K   NL          +++A    L S+   +   +
Sbjct: 403 LIKFISELDVKFISYN-------FKTLLNLGFTFKSMYMDMMIAYH--LISSQTKMDVII 453

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD-VTVTREIFKRL 175
            ++     + K+    F K      L       +     L G     D +       +  
Sbjct: 454 PITEYSNVDAKDFKTTFGKAHIET-LLVGEFAGYLSKIGL-GILAIYDEINHILHKEELY 511

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           + L   E  L  +   +  +G  +DV+     +  ++ E  K+++ +     G   +   
Sbjct: 512 DILIQNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEA-GEEFNINS 570

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF++  L     T+T       VL   +       ++  +  + ++     ++
Sbjct: 571 PKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVD 630

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           TL   ++S                                SR H   +QI T      +S
Sbjct: 631 TLPNLVDS-------------------------------NSRIHTSFNQIGTATGRLSSS 659

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   I         +R   +A EGK L+  D + +E RVL  M+ ++  ++A+   +D
Sbjct: 660 EPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 719

Query: 408 LYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           L+  T  R FN+     VT++QR I K++  ++ Y   A     +A    + +   +  +
Sbjct: 720 LHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAF---GLAKELKIPVKDASEYI 776

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           K     E++     F + + E   EH       G      K+      S+   +  +  +
Sbjct: 777 K--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKAQAER 829

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
               T+  G A    K+  + +    KDK+++ L+L     L++
Sbjct: 830 MAVNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIF 873


>gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
 gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
          Length = 975

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/500 (16%), Positives = 168/500 (33%), Gaps = 131/500 (26%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   + + G  +D A+ + ++  + VE   L +++ + + G   +    ++L   L
Sbjct: 579 PLVPVLLRMEEAGVRIDPAVLNEMSSRLAVEIDNLAEKIYADS-GHRFNINSPKQLGDVL 637

Query: 244 FLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           F +  L             T Q VL    +  P A  V  +R      +   L+ L    
Sbjct: 638 FNKMDLPKPMKYGKGKVVSTAQDVLEELAENHPIAALVIEHRQLQKLKSTY-LDQLPSLS 696

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           + +GR+                               H   +Q+ T      +++P+   
Sbjct: 697 DREGRI-------------------------------HTTFNQVGTATGRLSSTNPNLQN 725

Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I     I   +R+  IA+ G  L+ AD + IE R++A  + +   L A+ TG+D++  T 
Sbjct: 726 IPTRTAIGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLNAYRTGQDIHTLTA 785

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F V    + K+ RA  K +   + Y         +A+  G++       ++T     
Sbjct: 786 AEVFGVDAETMDKETRARAKAVNFGIVYGISPF---GLAAQLGIDQKVARTYIET----- 837

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            ++  +   R++ E                                          +T+ 
Sbjct: 838 YYDRYKGIKRFIDETL----------------------------------------ETVR 857

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
              A+     R  P+  ++          P+ R          R+ +NT           
Sbjct: 858 LAGAVSTHFGRVRPIPDIQSRN-------PNMRGFA------ERTAINTPL--------- 895

Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE-TPDTDEFNASM 646
                    Q  + D++   M++  +          + L VHDE++ +  P   E   ++
Sbjct: 896 ---------QGTAADLIKLAMISLDREIRARGLKSRMTLQVHDELLFDVVPSEAEEMQTL 946

Query: 647 LYHLMTSNPSWAKGLPLKAE 666
           + H M +       +P+ A+
Sbjct: 947 VQHEMENVAE--FSIPIVAD 964


>gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 431

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/490 (15%), Positives = 152/490 (31%), Gaps = 129/490 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VD      +         ++++++ +   G   +    ++L
Sbjct: 31  KMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEA-GEEFNLNSPKQL 89

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF + GL +   T+T       VL   K+  P    +   R  A   +   +  L++
Sbjct: 90  GVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQSTY-VEGLLK 148

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  D ++                               H    Q +T      + DP+ 
Sbjct: 149 VIQPDNKI-------------------------------HTRYVQTLTQTGRLSSVDPNL 177

Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   +  E    +  +D + IE RVLA ++ ++   +AF  G+D++ 
Sbjct: 178 QNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHA 237

Query: 411 TTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           +T  R F V     VT + R   K +   + Y        +     G+        + T 
Sbjct: 238 STAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKQAQQYIDT- 293

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                   + +K+  V +   E+ +  +
Sbjct: 294 ----------------------------------------YFEKYPGVKQYMEEIVRDAK 313

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
              +     +  +RR +  +              + R+   R     R+ +NT       
Sbjct: 314 D--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF-AERTAINTP------ 350

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DIL   M+         K    ++L VHDE+V E P+++   
Sbjct: 351 ------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 398

Query: 644 ASML-YHLMT 652
            + L   +M 
Sbjct: 399 LNQLVKEVME 408


>gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
 gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
          Length = 887

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/511 (18%), Positives = 170/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+  +L+ ++ S   G   +    ++L  
Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQA-GEKFNLNSPKQLGH 547

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL     T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 548 ILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            SDG                               R H    Q +T      + DP+   
Sbjct: 607 QSDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+Q   +AF+TG D++  T
Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P +VT   R   K +   + Y         ++   G++       +     
Sbjct: 696 AMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E +P                            ++   + +A +  
Sbjct: 750 -------------YFEQYP----------------------------QIREYMDKAVQTA 768

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            E G A  I  +RR +P ++ KK          + RS         R+ +N+        
Sbjct: 769 REKGYAETIMHRRRYLPDIHAKKF---------TVRSFA------ERTAINSP------- 806

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K          IV+ VHDE++ + P  +    
Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETI 855

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
          Length = 887

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/511 (18%), Positives = 170/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+  +L+ ++ S   G   +    ++L  
Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQA-GEKFNLNSPKQLGH 547

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL     T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 548 ILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            SDG                               R H    Q +T      + DP+   
Sbjct: 607 QSDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+Q   +AF+TG D++  T
Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P +VT   R   K +   + Y         ++   G++       +     
Sbjct: 696 AMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E +P                            ++   + +A +  
Sbjct: 750 -------------YFEQYP----------------------------QIREYMDKAVQTA 768

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            E G A  I  +RR +P ++ KK          + RS         R+ +N+        
Sbjct: 769 REKGYAETIMHRRRYLPDIHAKKF---------TVRSFA------ERTAINSP------- 806

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K          IV+ VHDE++ + P  +    
Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETI 855

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1]
 gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1]
          Length = 912

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 151/399 (37%), Gaps = 45/399 (11%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L  +   +  +G  +DV      +  +D E  ++++ +     G   +    +
Sbjct: 510 LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEA-GEEFNINSPK 568

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF++  L     T+T     +   + L      +                     
Sbjct: 569 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                  R  L +   ++         P       SR H   +QI T      +SDP+  
Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I         +R   +A EGK L+  D + +E RVL  M+ ++  ++A++  +DL+  T
Sbjct: 661 NIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKDLHDLT 720

Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             R FN++ ++ V+++QR I K++  ++ Y         +A    + +   +  +K    
Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E++    +F R + E   EH       G      K+      S+   + ++  +    T
Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +  G A    K+  V +  + KDK ++ L+L     L++
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIF 869


>gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 884

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/617 (17%), Positives = 179/617 (29%), Gaps = 134/617 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + +     V HN+      L+        +        LA     P       +AL +  
Sbjct: 371 IADPARPKVMHNAK---DALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALSVEY 427

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 +EL+     G+      +  + +   A            T   E     E L  
Sbjct: 428 LH----RELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHD 483

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E     L   +   G   D A   ++  +      +  +E  + T G   +    ++L+
Sbjct: 484 MELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHA-TVGHEFNLGSPKQLQ 542

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKLNTLVEA 297
              F E  L     T+T       +   L  Q      V   R R        +  L++ 
Sbjct: 543 EVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPVIMLRHREQARLRSTVEGLIKT 602

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           + +DGR+  T                                 Q +       ++DP+  
Sbjct: 603 VAADGRIHTT-------------------------------FSQTVAATGRLSSTDPNLQ 631

Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            +         +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T
Sbjct: 632 NVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNT 691

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             ++ F VA ++V  + R   K M   L Y   A    +      +       L+ T   
Sbjct: 692 VASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAGEARALMDTYF- 747

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                       R   + + L    ++ 
Sbjct: 748 -------------------------------------------ERFGGVRDYLRHVVDEA 764

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G       RR                 LP                LN+  RQ  RE 
Sbjct: 765 RATGYTATMLGRRRY---------------LP---------------DLNSDNRQ-RREA 793

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                L   I Q  + DI+   M+   +A         ++L VHDEIV E    +     
Sbjct: 794 AERMALNAPI-QGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERDEVE 852

Query: 646 MLYHL-MTSNPSWAKGL 661
            +    M+S    +  L
Sbjct: 853 TIVRREMSSAVELSAPL 869


>gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 905

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/617 (17%), Positives = 179/617 (29%), Gaps = 134/617 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + +     V HN+      L+        +        LA     P       +AL +  
Sbjct: 392 IADPARPKVMHNAK---DALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALSVEY 448

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 +EL+     G+      +  + +   A            T   E     E L  
Sbjct: 449 LH----RELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHD 504

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E     L   +   G   D A   ++  +      +  +E  + T G   +    ++L+
Sbjct: 505 MELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHA-TVGHEFNLGSPKQLQ 563

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKLNTLVEA 297
              F E  L     T+T       +   L  Q      V   R R        +  L++ 
Sbjct: 564 EVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPVIMLRHREQARLRSTVEGLIKT 623

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           + +DGR+  T                                 Q +       ++DP+  
Sbjct: 624 VAADGRIHTT-------------------------------FSQTVAATGRLSSTDPNLQ 652

Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            +         +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T
Sbjct: 653 NVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNT 712

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             ++ F VA ++V  + R   K M   L Y   A    +      +       L+ T   
Sbjct: 713 VASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAGEARALMDTYF- 768

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                       R   + + L    ++ 
Sbjct: 769 -------------------------------------------ERFGGVRDYLRHVVDEA 785

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G       RR                 LP                LN+  RQ  RE 
Sbjct: 786 RATGYTATMLGRRRY---------------LP---------------DLNSDNRQ-RREA 814

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                L   I Q  + DI+   M+   +A         ++L VHDEIV E    +     
Sbjct: 815 AERMALNAPI-QGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERDEVE 873

Query: 646 MLYHL-MTSNPSWAKGL 661
            +    M+S    +  L
Sbjct: 874 TIVRREMSSAVELSAPL 890


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 148/621 (23%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K      I  + +  + VL    GL     +    L    LS+ +  E   L   +   
Sbjct: 369 FKKVLEQPIATYDFKRSKVLLSHLGLDLPAASYDARLANYLLSTVEDNEMATLARLYTTI 428

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEP------LSSKEQE 184
             +T E +Y +          +   +    V V  +    +  +L         +  E  
Sbjct: 429 SLDTDEVVYGKGVKRAVPDKAVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELP 488

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+      + +   V   +L QE+  +  G V +    ++L   LF
Sbjct: 489 LANVLAKMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILF 547

Query: 245 LETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            +  L L     T+T       VL     + P   ++ + R      +   +  L + + 
Sbjct: 548 EKMQLPLHLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTY-VIGLQDYIM 606

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR                                H    Q +T      + DP+   I
Sbjct: 607 ADGR-------------------------------IHTRYLQDLTQTGRLSSVDPNLQNI 635

Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R     S +   L+ +D + IE RVLA ++G++  + AF+ G D++ +T 
Sbjct: 636 PIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 695

Query: 414 ARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            R F +  P  VT + R   K +   + Y         +++  G+        + T    
Sbjct: 696 MRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDF---GLSNNLGIPRKQAKAYIDT---- 748

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                                + +++  +      + +  +   
Sbjct: 749 -------------------------------------YFERYPGIKAYMERVVREAKD-- 769

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           +     + ++RR +P +              + R    R     R+ +N+          
Sbjct: 770 KGYVETLFKRRRQLPDI--------------NSRQFNVRSF-AERTAINSP--------- 805

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DIL   M+N  +A         ++L VHDEIV E P+ +      
Sbjct: 806 ---------IQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAAVKA 856

Query: 647 L-YHLMTSNPSWAKGLPLKAE 666
           L    M S  S A  +PL+ +
Sbjct: 857 LVKETMESAVSLA--VPLRVD 875


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134
            K  F   I  + +  + VL    G+     +    L    LS+ +  E   +   F   
Sbjct: 289 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 348

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184
             E  + +Y +          +  E+    V V  +   + L+ L++ EQ          
Sbjct: 349 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 408

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  V+ A    + +   V    L QE+  +  G   +    ++L + LF
Sbjct: 409 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 467

Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +  L LE    T+T     +   ++L P A  V                          
Sbjct: 468 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 503

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360
                L +   ++             L    + H    Q +T      + DP+   I   
Sbjct: 504 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 558

Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R 
Sbjct: 559 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 618

Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +  A  VT + R   K +   + Y         +++  G+        + T      +
Sbjct: 619 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQSKSYIDT------Y 669

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            +     +   EN    A +  ++                                    
Sbjct: 670 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 694

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              + ++RR++P +              + R+   R     R+ +N+             
Sbjct: 695 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 725

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q  + DIL   M+N  KA         ++L VHDEIV E P+ +      L  
Sbjct: 726 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 779

Query: 650 -LMTSNPSWAKGLPLKAE 666
             M +    A  +PL  +
Sbjct: 780 DTMEAAVDLA--VPLCVD 795


>gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684]
 gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684]
          Length = 884

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/593 (17%), Positives = 183/593 (30%), Gaps = 135/593 (22%)

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-----RNKPNHR 151
            VLA + G   AL    +AL+     +     + A   +        D     R      
Sbjct: 393 EVLAAAIGERPALAHDAKALREVPATLAHDTLIAAYLLEPARRSYPLDELTEERGIGTDV 452

Query: 152 EAWRLFGEYCKGDVTV----TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
           E            +T       E  + L      E  L  + + +   G  +D  L  T+
Sbjct: 453 EDAAAADAILVHALTAAQRPQLEERELLPLFDDVELPLVRVLRAMETAGLRLDTELLATI 512

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLS 264
              V  E   L++E+  LT G        ++L   LF + GL  +   +T      RVL 
Sbjct: 513 RTRVMDEAVALEREIWELT-GEEFMIGSPQQLGQILFEKLGLSRKRRGKTGYSTDARVLQ 571

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
           + +   P   ++   R                                 ++         
Sbjct: 572 AIRGEHPVIEKIERWREL-------------------------------TKLASTYLDAL 600

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVA 379
           P    P   R H   +Q+        +++P+   I     +   +R+C +A  G  L+ A
Sbjct: 601 PLLISPEDHRLHTTFNQVTAATGRLSSTNPNLQNIPIRTPLGREIRACFVAEPGNVLISA 660

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + +E RVLA +AGE+   + F  GED++  T A    + P Q+    R+  K++   +
Sbjct: 661 DYSQVELRVLAHIAGEEVLKEIFRRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGI 720

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y   A                       +      E+A+ F     +  P       FI
Sbjct: 721 VYGLSAFGL-------------------ADRLQIPREEAQEFIDRYLDGFP---AVQAFI 758

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T  E+                         T +     +  +RR +P +          
Sbjct: 759 RTTIEQ------------------------ATDQGYVTTLMGRRRQIPELR--------- 785

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                                N   RQL             ++Q  + D++   M+NA +
Sbjct: 786 -------------------ARNYQMRQLGERLA-----VNTVIQGTAADVIKLAMVNADR 821

Query: 620 AGY------DIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           A +       ++L +HDE++ E P +  E    ++   M         L + A
Sbjct: 822 ALHASGLRTRLILQIHDELLFEGPAEEAEQARDLVVPQMVDALELDPPLVVDA 874


>gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO]
          Length = 838

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/532 (15%), Positives = 162/532 (30%), Gaps = 81/532 (15%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           + +       +++      L                ++L          +    G A   
Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177
               ++  + +  +  K         +  P   E   LF  +    V     +  +L   
Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469

Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           L+ K         E  L  +   +   G  VD      +         +++Q++     G
Sbjct: 470 LAEKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL +   T+T       VL   ++  P    +   R  A  
Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ + SDG++                               H    Q +T 
Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                + DP+   I         +R   +  E    +  +D + IE RVLA ++ ++   
Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676

Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            AF  G+D++ +T  R F +     VT + R   K +   + Y        +     G++
Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  + T      + +     +   E     A +  ++ T   R ++     +SR  
Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVETLYHR-RRYLPDINSRNY 786

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLV 569
            + +   +    T   G A    K   + L    K+      ++L     LV
Sbjct: 787 NIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELV 838


>gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
 gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
          Length = 910

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/524 (16%), Positives = 154/524 (29%), Gaps = 132/524 (25%)

Query: 149 NHREAWRLFGEYCKGDV-TVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYC 198
              E       Y        +R   K L+ L  +         E  L Y    +   G  
Sbjct: 471 EDPEEVEHRMHYACYQAYVASRAPQKLLKRLEEQGMRALYEEVELPLVYTLYDMETAGIA 530

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           V+     +    +     +L++ +     G   +    ++L   LF + GL     T+T 
Sbjct: 531 VEKEALKSYGDQLVGRINELEEGIYREA-GETFNINSPKQLGEVLFGQLGLPGARKTKTG 589

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
                     L      V                            R  L+F   ++   
Sbjct: 590 YSTAADVLDPLAVNYQIV----------------------------RDVLEFRQLTKLKS 621

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEG 373
                   + +    R H    Q +T      +++P+   I     +   +R    A EG
Sbjct: 622 TYADGL-AKVIADDGRIHSSFQQTVTATGRLSSTEPNLQNIPIRMELGKEIRRVFPAMEG 680

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
              V +D + IE RVLA ++ +   ++A+  G+D++  T +  F+    +VT  QR+  K
Sbjct: 681 CVFVDSDYSQIELRVLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAK 740

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y   A     +A   G++       +                           
Sbjct: 741 AVNFGIVYGISAF---GLAKDLGISREEAQEYIDGYF----------------------- 774

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYMK 552
                               + R   L + L    E   + G A+ +  +RR VP +   
Sbjct: 775 ------------------AAYPR---LHDYLDGLVEFARKEGYAVTLFGRRRPVPEL--- 810

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
           K+ N +                  R  +N                    VQ  + DI+  
Sbjct: 811 KNSNFMQRQF------------GERVAMNAP------------------VQGTAADIIKI 840

Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL 650
            M+              ++LTVHDE++ ET + +E     +   
Sbjct: 841 AMVRVHDRLAKEGLRSRLILTVHDELLVETFEQEEQEVREILDQ 884


>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
 gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
          Length = 905

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/657 (17%), Positives = 190/657 (28%), Gaps = 149/657 (22%)

Query: 33  FAFGFDDHPV--ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
            A       V  +L D   D    Q L   L +     V H +    T   A     I +
Sbjct: 361 IALAAGGQGVAYDLADITPDDE--QALATWLADPTAPKVLHGAK---TAWHALAARGIGL 415

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFC----KGETHECLYD 144
              +    LA     P            +   ++++ G +           G   + + +
Sbjct: 416 DGVVFDTELAAYLCYPDQRGYDLGDLVARHLGRELKVGDDDAQGALDLDLGGAGTQGVRE 475

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
             +                D    R     L   +  E  L  +   +   G   D A  
Sbjct: 476 ATRAAAVADLAQALAGQLDD----RGAASLL---TDVELPLSAVLARVEATGIATDTAYL 528

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
             L +    ++            G   +    ++L+  LF E  +     T+T      +
Sbjct: 529 TGL-ERGFADQVAQAAAEAYDAIGHEVNLGSPKQLQEVLFGELDMPKTKKTKTGYTTDAA 587

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           +  +L  +    F   + A R A      +  L+++++ DGR+  T              
Sbjct: 588 ALAELYAKTGHPFLEHLLAHRDAAKLRVTVEGLLKSVHPDGRIHTT-------------- 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KK 375
                              Q I       +++P+   I         +R      EG + 
Sbjct: 634 -----------------FQQTIAATGRLSSTEPNLQNIPIRTEAGRQIRRAFRVGEGFES 676

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++G++  ++AF TGEDL+    +R F V PA VT + R+  K M
Sbjct: 677 LLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVKAM 736

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y   A    +     G+       L                              
Sbjct: 737 SYGLAYGLSAFGLSQ---QLGIATGEAQGL------------------------------ 763

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                              +R   +   L    E+    G       RR           
Sbjct: 764 --------------MDDYFARFGGVREYLDGVVEEARATGYTATVLGRRRY--------- 800

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                 LP                L +  RQ  R+      L   I Q  + DI+   M+
Sbjct: 801 ------LP---------------DLTSDNRQ-RRQMAERMALNAPI-QGSAADIIKLAML 837

Query: 616 NATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
              +          ++L VHDE+V E  P   E    +L   M +  ++   +PL  
Sbjct: 838 GVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLRTQMGA--AYTLDVPLDV 892


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 188/624 (30%), Gaps = 137/624 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L + +   V H+S      + A       +H       +A     P   +      AL+ 
Sbjct: 381 LADAERPKVLHDSK---PAVLAFAAHGWELHGIARDTQIAAYLARPDQRSYDLTDLALRY 437

Query: 119 SSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +++  +  E       G   E + ++N      A     +    D  ++R+  +    
Sbjct: 438 LHRELRVDAPETGQLTLDGLGDEGVAEQNLMLQARATLDLAD--AIDAELSRDGEQSARL 495

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           ++  E  L  +  T+   G   D      L      E     Q    +  G   +    +
Sbjct: 496 MAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEV-VGREFNLGSPK 554

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTL 294
           +L+  LF E GL      +T       + + L  Q      + +   R        ++ L
Sbjct: 555 QLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKSTVDGL 614

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           +++++ DGR+  T                                +Q +       +++P
Sbjct: 615 LKSVSDDGRIHTT-------------------------------FNQTVAATGRLSSTEP 643

Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   +  EG + L+ AD + IE R++A ++ +   ++AF +G D 
Sbjct: 644 NLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDF 703

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T +  F V    VT DQR   K M   L Y   A    +     G++      L   
Sbjct: 704 HAATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQ---QLGISAEEARGL--- 757

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                         +    + + L +  
Sbjct: 758 -----------------------------------------MENYFAGFGGVRDYLQEVV 776

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
            +  ++G       RR                 LP                L +  RQ  
Sbjct: 777 ARARQDGYTSTILGRRRY---------------LP---------------DLVSDNRQ-R 805

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642
           RE      L   I Q  + DI+   M++   A         ++L VHDE+V E    +  
Sbjct: 806 REMAERMALNAPI-QGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERE 864

Query: 643 NASMLY-HLMTSNPSWAKGLPLKA 665
               L    M    ++   +PL+ 
Sbjct: 865 TLEALVRKQMGE--AYPLSVPLEV 886


>gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118]
          Length = 886

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/511 (17%), Positives = 171/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+  +L+ ++     G   +    ++L  
Sbjct: 488 EIPTACVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQA-GEKFNLNSPKQLGH 546

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 547 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 605

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H    Q +T      + DP+   
Sbjct: 606 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 634

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+Q   +AF+TG D++  T
Sbjct: 635 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 694

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P QVT   R   K +   + Y         ++   G++       +     
Sbjct: 695 AMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 748

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E +P                            ++ + + +A ++ 
Sbjct: 749 -------------YFEQYP----------------------------QIKDYMDKAVQEA 767

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            + G A  I  +RR +P ++ KK          + R+         R+ +N+        
Sbjct: 768 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 805

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K          +V+ VHDE++ + P  +    
Sbjct: 806 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 854

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 855 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 883


>gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 887

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 106/644 (16%), Positives = 212/644 (32%), Gaps = 148/644 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           WD           K  L +     +  +S  ++ +L    N  + +      +++A    
Sbjct: 359 WDQAIQSP---AFKAWLADASNQKILFDSKRDQVILA---NAGLDLAGIDFDIMIANYLI 412

Query: 105 LPSALKAVGEALKLSS--QKMEEGKELIARFCKGE-THECLYDRNKPNHREAWRLFGEYC 161
                K + + L  +     ++  + +  +  K         + +  N  +A  L  E  
Sbjct: 413 DTHLAKELADMLTNNDMPSLVKYDEAVYGKGAKQAVPDSAELNDHLANKVKAMGLLVEPL 472

Query: 162 KGDVT--VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
              +      ++++ +      E  L  +   +  +G  VD  +    NQ +     +++
Sbjct: 473 TQQLKDLHMWDLYQTI------EMPLARVLARMEIQGVKVDAQILADKNQALLERLAQME 526

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQV 276
            E+  L  G   +   +++L   LF +  L +   T+T   T   VL       P    +
Sbjct: 527 AEIYDLA-GEEFNINSVKQLGVILFEKLELPIIKKTKTGYSTAADVLEKLADKHPIIPAI 585

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   S+     L  L   +  DG++                               H
Sbjct: 586 LEYRQ-ISKLQGTYLAGLPTYIKEDGKI-------------------------------H 613

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
               Q +T      ++DP+   I         +R   + + EG +L  AD + IE RVLA
Sbjct: 614 SRFVQTLTQTGRLSSADPNLQNIPARIEEGRRIRQAFVPAHEGWQLFGADYSQIELRVLA 673

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQGGAKAFQ 449
            +A +Q  + AF++GED++  T  R F + P  V   + R   K +   + Y        
Sbjct: 674 HIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTVIDANLRRQAKAVNFGIVYGISDY--- 730

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            +++   +        ++       +E   +  ++M++   E A E  ++ T        
Sbjct: 731 GLSNNLNIPRKHAKAFIE-----NYFEKYPDIHQFMEDIVAE-AKEKGYVETLF------ 778

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                          ++RR +P +              + RS  
Sbjct: 779 -------------------------------KRRRYLPDIDASNF---------NIRSFA 798

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YD 623
                  R+ +N+                   +Q  + DI+   M+    A         
Sbjct: 799 ------ERTAMNSP------------------IQGTAADIIKIAMVRIQDALDEKGLQSR 834

Query: 624 IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           ++L+VHDE++ E P +  E  + ++  +M S       +PLK E
Sbjct: 835 LLLSVHDEVILEGPAEEMEVLSDLVPDIMESCVE--LDVPLKVE 876


>gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
 gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
          Length = 916

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/534 (17%), Positives = 188/534 (35%), Gaps = 83/534 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEA 115
           L + +   DV  +++N        K   NL          +++A       + +      
Sbjct: 403 LIKFIAELDVKFISYN-------FKTLLNLGFTFKSMYMDMMIAYHLISSQTKMDVFIPI 455

Query: 116 LKLSSQKMEEGKE----------LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
            + S+   ++ K           L+  F    +   L       + E   +  +    D+
Sbjct: 456 TEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGLGI--LAIYDEINHILHKEELYDI 513

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       L   E  L  +   +  +G  +DV+     +  ++ E  K+++ +   
Sbjct: 514 ------------LIQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEE 561

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L   LF++  L     T+T       VL   +       ++  +  +
Sbjct: 562 A-GEEFNINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRK 620

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     ++TL   ++S                                SR H   +QI
Sbjct: 621 LNKLKTTYVDTLPNLVDS-------------------------------NSRIHTSFNQI 649

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            T      +S+P+   I         +R   +A EGK L+  D + +E RVL  M+ ++ 
Sbjct: 650 GTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDEN 709

Query: 398 KLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
            ++A+   +DL+  T  R FN+     VT++QR I K++  ++ Y   A     +A    
Sbjct: 710 LIEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAF---GLAKELK 766

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           + +   +  +K     E++     F + + E   EH       G      K+      S+
Sbjct: 767 IPVKDASEYIK--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSK 819

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +  +  +    T+  G A    K+  + +    KDK+++ L+L     L++
Sbjct: 820 NKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIF 873


>gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
 gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 937

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/511 (18%), Positives = 156/511 (30%), Gaps = 135/511 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVA----LAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L   E  L  L   +   G  VDV     L        D  +      +   T G+  + 
Sbjct: 526 LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASVAEETGGMQVNL 585

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---K 290
              ++L+  LF    +     T+T     + S + L  Q    F   + A R A      
Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDATKLRQT 645

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L+E +  D R+  T                                 Q         
Sbjct: 646 VEGLLETVAPDDRIHTT-------------------------------YSQTAAATGRLS 674

Query: 351 TSDPDPLQII-----SDCVRSCVIA----SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           +  P+   I         +R   +A     E   L+ AD + IE R++A ++ ++  ++A
Sbjct: 675 SLHPNLQNIPVRTEAGRRIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQA 734

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  GEDL+    ++ F V P +VT +QRA  K M   L Y   +     ++    ++++ 
Sbjct: 735 FREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSF---GLSKQLKISVDE 791

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              L+K                                                R   + 
Sbjct: 792 ARGLMKGYF--------------------------------------------DRFGGVR 807

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           + L     Q  ++G       RR                 LP                L+
Sbjct: 808 DYLRDVVAQARQDGYTSTIEGRRRY---------------LP---------------DLS 837

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE 635
           +  RQL R+      L   I Q  + DI+   M++             ++L VHDE++ E
Sbjct: 838 SDNRQL-RDMAERAALNAPI-QGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILE 895

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
            P  + E   ++L   M         +PL  
Sbjct: 896 VPAAELEQATALLEERMGRAAE--LSVPLDV 924


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 101/624 (16%), Positives = 187/624 (29%), Gaps = 137/624 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L + +   V H+S      + A       +        +A     P   +      AL+ 
Sbjct: 391 LADAERPKVLHDSK---PAVLAFAAHGWELQGIARDTQIAAYLARPDQRSYDLTDLALRY 447

Query: 119 SSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +++  +  E       G   E + ++N      A     +    D  ++R+  +    
Sbjct: 448 LHRELRVDAPETGQLTLDGLGDEGVAEQNLMLQARATLDLAD--AIDAELSRDGEQSARL 505

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           ++  E  L  +  T+   G   D      L      E     Q    +  G   +    +
Sbjct: 506 MAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEV-VGREFNLGSPK 564

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTL 294
           +L+  LF E GL      +T       + + L  Q      + +   R        ++ L
Sbjct: 565 QLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKSTVDGL 624

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           +++++ DGR+  T                                +Q +       +++P
Sbjct: 625 LKSVSDDGRIHTT-------------------------------FNQTVAATGRLSSTEP 653

Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   +  EG + L+ AD + IE R++A ++ +   ++AF +G D 
Sbjct: 654 NLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDF 713

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T +  F V    VT DQR   K M   L Y   A    +     G++      L   
Sbjct: 714 HAATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQ---QLGISAEEARGL--- 767

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                         +    + + L +  
Sbjct: 768 -----------------------------------------MENYFAGFGGVRDYLQEVV 786

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
            +  ++G       RR                 LP                L +  RQ  
Sbjct: 787 ARARQDGYTSTILGRRRY---------------LP---------------DLVSDNRQ-R 815

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642
           RE      L   I Q  + DI+   M++   A         ++L VHDE+V E    +  
Sbjct: 816 REMAERMALNAPI-QGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERE 874

Query: 643 NASMLY-HLMTSNPSWAKGLPLKA 665
               L    M    ++   +PL+ 
Sbjct: 875 TLEALVRKQMGE--AYPLSVPLEV 896


>gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513]
 gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513]
          Length = 872

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 180/525 (34%), Gaps = 72/525 (13%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            +   AF F +  V   D        + LKE  E        H    +  V  +   ++ 
Sbjct: 328 EIKKIAFSFGNDTVY-IDGFQI----KDLKEIFEKEKFEFTTHEIK-DFLVKLSYKGIEC 381

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              +++ T ++A       +   +   LK   +      E +  F KG       D+ K 
Sbjct: 382 K-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEV--FGKG------RDKKKL 432

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRL----------EPLSSKEQELWYLDQTINDRGYC 198
                  L    C   V +  ++ ++L            L   E  L  + +++   G+ 
Sbjct: 433 EEIGEDILADYICSRCVHL-FDLREKLMNFIEEMDMKRLLLEIEMPLVEVLKSMEVSGFT 491

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           +D  +   L+Q ++    ++  ++     G   +    ++L  +LF +  L +   T+T 
Sbjct: 492 LDKEVLKELSQKINDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG 550

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
                   ++L P                    N +V  +         +++   ++   
Sbjct: 551 YSTDSEVLEQLVP-------------------YNNIVNDI---------IEYRQLTKLKS 582

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                F P      +R H    Q++T      +++P+   I         +R   I   +
Sbjct: 583 TYIDGFLPLMD-ENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAFIPRTK 641

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +V AD + IE RVLA ++G++  +++F   ED+++ T +  F V   +VT + R + 
Sbjct: 642 DGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRVA 701

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y         ++    ++       +        + +     +   E     
Sbjct: 702 KAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYIEKIVRF 752

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           A E+ ++ T   R ++   + +SR     ++  +        G A
Sbjct: 753 AKENGYVITIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSA 796


>gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
          Length = 952

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 107/650 (16%), Positives = 197/650 (30%), Gaps = 146/650 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           D      D        + +    L + +   V H        LKA  +  + +   +   
Sbjct: 413 DGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFK---AALKALTSRGLELEGVVDDT 469

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            ++     P       E  +L+   +  G  +     K    E  +D       +A    
Sbjct: 470 SISGYLIQPDRRTY--ELAELAQHHLNVG--IPQATAKAGQLELSFDGEDEAAADALVQS 525

Query: 158 GEYCKGDV------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
               +            R   + L  L   E  +  +   +   G  +D+A        +
Sbjct: 526 AAVVQALSRYFEGELKERRAEELLSTL---ELPVSRVLADMELAGIGIDMARMDDQLADL 582

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
                +  ++  +   G   +    ++L+T LF E  L      ++      +S K L  
Sbjct: 583 ARVIDQAQEQAFA-AIGHEVNLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLE 641

Query: 272 QAIQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           +    F  ++ A R A      L +L +++  DGR+  T                     
Sbjct: 642 KTGHEFLVQLMAHREAAKLRQMLESLKKSVAEDGRIHTT--------------------- 680

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLA 382
                       Q +       +++P+   I         VR   +  EG + L+ AD +
Sbjct: 681 ----------YAQNVAATGRISSNNPNLQNIPIRSEEGRRVRGIFVVGEGYECLLSADYS 730

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G+Q  ++A++ GEDL+    +  F+V   +VT   R+  K M   L Y 
Sbjct: 731 QIEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSAMRSKVKAMSYGLAYG 790

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             +     ++    ++++    L+K                                   
Sbjct: 791 LTSF---GLSKQLEISVDEARTLMK----------------------------------- 812

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                    +   R   + + L    +Q   +G       RR                 L
Sbjct: 813 ---------EYFDRFGAVRDYLRGVVDQARVDGYTATIEGRRRY---------------L 848

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619
           P                L +T RQL RE      L   I Q  + DI+   M+       
Sbjct: 849 P---------------DLTSTDRQL-RENAERIALNSPI-QGSAADIIKRAMLGVHAELK 891

Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
                  ++L VHDE+V E    +      L    M +       +PL+ 
Sbjct: 892 AQGLASRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAAAD--LSVPLEV 939


>gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/483 (15%), Positives = 144/483 (29%), Gaps = 127/483 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G+ VD        + ++ +  KL+ ++  +  G   +    ++L  
Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIA-GEWFNINSPKQLSY 511

Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L +   T+T       VL            + + RM                 
Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                 +G LQ                    P   R H    Q  T      +SDP+   
Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +   G  L+ AD + IE R+LA ++ ++  + AF+   D++  T 
Sbjct: 601 IPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  F V  A VT + R+  K +   + Y         +A    ++    A  +       
Sbjct: 661 AEVFGVDIADVTPEMRSQAKAVNFGIVYGISDY---GLARDIKISRKEAAEFIN------ 711

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 +   R  ++   L    +   +
Sbjct: 712 --------------------------------------KYFERYPKVKEYLDNTVKFARD 733

Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           NG  + +  ++R +  +                R+L        R  +N+          
Sbjct: 734 NGFVLTLFNRKRYIKDIKST------------NRNL---RGYAERIAMNSP--------- 769

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q    DI+   M+   +          I+L VHDE++ E P  ++     
Sbjct: 770 ---------IQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKE 820

Query: 647 LYH 649
           +  
Sbjct: 821 IVK 823


>gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
 gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
          Length = 879

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 101/677 (14%), Positives = 208/677 (30%), Gaps = 167/677 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEA 60
           +  D ET + ID  +           ++ F+F   ++        H          L+ A
Sbjct: 319 IAFDTET-TSIDTKEA---------KIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSA 368

Query: 61  LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  ++      + HN  ++  +++  F L +P  ++  T++LA        +     AL
Sbjct: 369 KKAIELIFKHFIIGHNLKYDFKIIENNFKLSLP-QKYADTMILAWLKNPSLRVNMDDLAL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+              + +           +Y   D  +T   +    
Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474

Query: 173 KRLEPLSSKEQELWYLD-----QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LEP      + +  D       + + G  +D      L +  + E   L +E+ +L  
Sbjct: 475 KNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCE 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL+      P   ++ + R   +
Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYR-ELA 592

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                               SR +    Q  T
Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------ENSRIYSSFLQTGT 623

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC IA EG   +  D + IE R+LA  + ++  L
Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+  ED++  T    F     +   + R+I K +   L Y  G   ++ ++    +  
Sbjct: 684 NAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMG---YKTLSKNLKIEA 736

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           N                                              K    +     + 
Sbjct: 737 NLA--------------------------------------------KTYIEKYFENFTS 752

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           + +   +   +   NG                        +   SGR          + Y
Sbjct: 753 IKSYFEKVKNEAKANG-----------------------FISTLSGR----------KRY 779

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---DIVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + DI+   M+   K       ++L +HDE++ E 
Sbjct: 780 FDFENAKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEV 839

Query: 637 -PDTDEFNASMLYHLMT 652
             +  E        +M 
Sbjct: 840 KDELCENFVKKTSDIME 856


>gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
 gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
          Length = 910

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 176/659 (26%), Gaps = 155/659 (23%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLK-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           A    D      D        + +  + L + +     H++        A     + +  
Sbjct: 367 AIADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVHDAK---PAWHALTGRGLEVRG 423

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            +    LA     P         L            ++    +      L +  +     
Sbjct: 424 VVMDTALAAYLCHPDQRSYDLADL------------VVRYLHRELPRTDLDETGQGMLDL 471

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVA 202
                 +          E+   L            L   E  L      +   G   DV 
Sbjct: 472 DADSGAKSAGARAVAVVELAGPLAEEVADRGAQALLEDVELPLLRTLAEMEHDGIGADVE 531

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
               + +  D    +          G   +    ++L+  LF + G+     T+T     
Sbjct: 532 YLRGIEREFDAVVERAALGAYE-AIGRQVNLGSPKQLQEVLFDDLGMPKTRRTKTGYTTD 590

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             +   L  +    F   + A R A+     +  L+ ++  DGR+  T            
Sbjct: 591 ADALADLYVKTEHPFLEHLLAHREAIRLRQTVEGLLRSVAPDGRIHTT------------ 638

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGK 374
                                Q I       ++DP+   I         +R   +  EG 
Sbjct: 639 -------------------FQQTIAATGRLSSADPNLQNIPIRTEEGYRIREGFVVGEGY 679

Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE R++A ++G++  ++AF +GEDL+    +R F V   +VT   R+  K
Sbjct: 680 ETLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKIK 739

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L Y            +  L+++                                 
Sbjct: 740 AMSYGLAYG-----LSAFGLSKQLSIDVAEA----------------------------- 765

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                        +        R   + + L     Q  + G       RR         
Sbjct: 766 -------------RTLMDDYFDRFGGVRDYLSGVVAQARQVGYTETLMGRRRY------- 805

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                   LP                L +  RQ  RE      L   I Q  + D++   
Sbjct: 806 --------LP---------------DLTSDNRQ-RREMAERMALNAPI-QGSAADLIKVA 840

Query: 614 MMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
           M+   +          ++L VHDE+V E    +      L    M +       +PL  
Sbjct: 841 MLGVHRQMGEAGMSSRLLLQVHDELVLEVAPGEREALEELVRAQMGAAAE--LSVPLDV 897


>gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
 gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
          Length = 887

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 93/511 (18%), Positives = 172/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V  +    L     V+  +L+ ++ S   G   +    ++L  
Sbjct: 489 EIPTARVLARMEMNGMKVKASTLIQLQNEFAVQLKELEDKIYSQA-GEKFNLNSPKQLGH 547

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H    Q +T      + DP+   
Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+Q   +AF+TG D++  T
Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P  VT   R   K +   + Y         ++   G++             
Sbjct: 696 AMKIFHLDSPKDVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRK----------- 741

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                 A+ F     E +P                            ++ + + +A ++ 
Sbjct: 742 -----RAKEFIDNYFEQYP----------------------------QIRDYMDKAVQEA 768

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            E G A  I  +RR +P ++ K           + RS         R+ +N+        
Sbjct: 769 REKGYAETIMHRRRYLPDIHAKNF---------NVRSFA------ERTAINSP------- 806

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI------VLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K   ++      VL VHDE++ + P  +    
Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETV 855

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 856 KKIVPEVMQSAV--RLDVPLIADSGWGHNWY 884


>gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
 gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
          Length = 872

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 150/493 (30%), Gaps = 117/493 (23%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            D     E+ +        E  L +    +   G  V     H   + +  +   L++++
Sbjct: 460 RDRLKETEMEQLF---DEIEMPLVFTLYDMEQNGVKVAAEALHIYGEQLGQKIVDLEKDI 516

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNN 279
             LT G   +    ++L   LF + GL     T+T          KL P+     ++   
Sbjct: 517 YELT-GETFNINSPKQLGVILFEKLGLPHGKKTKTGYSTSADILDKLAPEYPVVSKILEY 575

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R      +                         A     +              R H + 
Sbjct: 576 RQLTKLKSTY-----------------------ADGLAGYIKDD---------GRIHGKF 603

Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q IT      +++P+   I     +   +R   I  +G   V AD + IE R+LA  +G
Sbjct: 604 NQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEDGYVFVDADYSQIELRILAHCSG 663

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + A++   D++  T ++ F+    +VT  QR   K +   + Y   +    +    
Sbjct: 664 DEQLINAYKEARDIHRITASQVFHTPFEEVTDLQRRNAKAVNFGIVYGISSFGLSQ---D 720

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             +     A  +++      + +     +   ++  EHA E+ ++ T   R +       
Sbjct: 721 LSITKKEAAQYIES------YFETYPSIKGFLDDAVEHAKENGYVTTVFGRRRPVPELSS 774

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           S   +  +   +        G A                                     
Sbjct: 775 SNFMQ-RSFGERVAMNAPIQGTA-----------------------------------AD 798

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             +  +N   R+          L EN             M +       +VL VHDE++ 
Sbjct: 799 IMKIAMNGVNRR----------LKEN------------NMRS------KLVLQVHDELLI 830

Query: 635 ETPDTDEFNASML 647
           E  + +  +   +
Sbjct: 831 EAYEEELEDVKEI 843


>gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
 gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
          Length = 974

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/514 (16%), Positives = 165/514 (32%), Gaps = 131/514 (25%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +  +RL      E  L ++   +   G+ V+        Q +    T++ QE+  L  G
Sbjct: 565 MQEMERL--YQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERITRITQEIYDLA-G 621

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL     T+T       VL     +     ++ + R+ A  
Sbjct: 622 TSFNLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAKL 681

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            +   +  L++ +  +                                R H    Q +T 
Sbjct: 682 QSTY-VEGLLKVIRKE------------------------------TGRVHTRFHQTLTA 710

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                +S+P+   I         +R     + +   +  AD + IE R+LA ++G++  +
Sbjct: 711 TGRLSSSEPNLQNIPIRLEEGRRLRRVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 770

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF    D++  T A  F V P QVT   R   K +   + Y        +  +      
Sbjct: 771 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNI----- 825

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                           ++A+ F     E  P                             
Sbjct: 826 --------------PQKEAKRFIESYFEKFP----------------------------G 843

Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   + +  +Q  E G    +  +RR +P ++ +  +          RS         R+
Sbjct: 844 VKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQ---------LRSFA------ERT 888

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
            +NT                   +Q  + D++   M+   +A         ++L VHDE+
Sbjct: 889 AMNTP------------------IQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDEL 930

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E P+ +     +L      N +    +PLK +
Sbjct: 931 IFECPNDELAALEVLVRDNMEN-AMTLSVPLKVD 963


>gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 882

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 82/521 (15%), Positives = 173/521 (33%), Gaps = 58/521 (11%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           + + L+   E+  +  + +++  +  +L    +  I +       ++     L S   + 
Sbjct: 357 IVEDLRALFEDEKIEKIGYDAKEDVIIL---LSKKIDLKNLTYDSMIVEYL-LDSTASSF 412

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV---TVTR 169
                +S   +   K+  +   KG   +   D  K    E ++ F     G      +  
Sbjct: 413 EFQNIISKYDLGSYKDEQSLLGKGVKKKSYSDLEK---DELFKYFSFILNGSFKLKEIQM 469

Query: 170 EIFKRLEPLS---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           E  + LE +      E  L  +   +   G   +V++   + + +D     L   +  ++
Sbjct: 470 EKLEELEMVDLYREIELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLTSSIFEIS 529

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G   +    ++L   LF +  L +   T+T         +KL  ++             
Sbjct: 530 -GEEFNINSTKQLGEILFDKLRLTVIKKTKTGYSTAQDVLEKLVDESPI----------- 577

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                            +   L++   ++               +  R H   +Q  T  
Sbjct: 578 -----------------IENILEYRKLTKLKNTYIDGLKALINEKTGRIHSRFNQTGTST 620

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +++P+   I         +R   +ASE   LV  D + IE RVLA ++ +   ++A
Sbjct: 621 GRISSTEPNLQNIPIRSEEGRLIRGAFLASEDSTLVDCDYSQIELRVLASLSKDPRMMEA 680

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE G D++  T +  F+V    VT   R+  K +   + Y         ++   G+    
Sbjct: 681 FEHGMDIHTKTASEVFHVDKEDVTDLLRSRAKAVNFGIVYGISDF---GLSRQLGITREL 737

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +        + D     +   +   E   +  ++ T   R ++   +  ++   + 
Sbjct: 738 AKEYIDG------YFDNFKKVKEYMDYEIETGKKQGYVKTIFNR-RRYIPELSAKNFNIR 790

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
           +   +    T   G A    K   V  VY +  K NL   L
Sbjct: 791 SFGERIALNTPIQGSAADIIKIAMVK-VYGEIKKRNLKSKL 830


>gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 870

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 86/491 (17%), Positives = 155/491 (31%), Gaps = 127/491 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VDV   + L      +  +   +  +   G   +    ++L
Sbjct: 469 EMELPLIPVLFEMERAGVAVDVDRLNELRAHFTEQVDQATNDAFA-AIGHEVNLSSPKQL 527

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVE 296
           +  LF E  L      +T       S   L  +    F   + A R A+     ++ L++
Sbjct: 528 QVVLFEELDLPRTKKIKTGFTTDAESLADLLVKTGHPFLVALMAYRDAIKLRQTVDGLLK 587

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A + DGR+  T                                 Q +       + +P+ 
Sbjct: 588 ATHEDGRIHTT-------------------------------YAQTVAATGRLSSLNPNL 616

Query: 357 LQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   +  EG + L+  D + IE R++A ++ ++  ++A++ GEDL+ 
Sbjct: 617 QNIPVRSEEGRRIRDVFMVGEGYQSLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHR 676

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              +R FNV P +VT + R+  K M   L Y   +    K                    
Sbjct: 677 YVGSRVFNVEPEEVTSEMRSKVKAMSYGLAYGLSSFGLSKQLKI---------------- 720

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            +  +K  +    R   +   L    +Q
Sbjct: 721 -------------------------------GVDEARKLMKDYFDRFGAVRTYLRSVVDQ 749

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             ++G       RR                 LP                LN++ R+L R+
Sbjct: 750 ARKDGYTETIFGRRRY---------------LPE---------------LNSSDRRL-RD 778

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNAT---KAGY---DIVLTVHDEIVCETPDTD-EFN 643
                 L   I Q  + D++   M+      KAG     ++L VHDE++ E  + + E  
Sbjct: 779 IAERAALNAPI-QGSAADLVKVAMLRIDEELKAGEYKSRMLLQVHDELILEIAEGELEPV 837

Query: 644 ASMLYHLMTSN 654
             ++   M   
Sbjct: 838 QELVTREMGQA 848


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 112/679 (16%), Positives = 202/679 (29%), Gaps = 162/679 (23%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
             I L   G   +AE    I                       + L     +  V  V H
Sbjct: 386 CYIPLGHGGTDMFAEKPEQIAMGDAL-----------------ERLGALFADDAVLKVGH 428

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM-EEGKELI 130
           N  ++  VL       + +  +  TL+++ +         + E  KL    +    K++ 
Sbjct: 429 NLKYDIGVLAQH---GVTVAPYDDTLLMSFALDAGKHQHGLDELAKLHLDHVCLSFKDV- 484

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-------- 182
              C     +                  EY   D  V   ++K L+     E        
Sbjct: 485 ---CGTGKSQIS------FAEVQLDRATEYAAEDAEVAWRLWKLLKLRLPLEGGTRVYEM 535

Query: 183 --QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
             + L  + + +   G  VD      L+     E  +++ E+ +L  G   +     +L 
Sbjct: 536 VDRPLAAVVEGMERAGIMVDRDYLAKLSGEFANEMLRIEGEIHALA-GQPFAIGSPRQLG 594

Query: 241 TWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLV 295
             LF + GL      ++    T Q  L   ++   P A ++   R  A            
Sbjct: 595 EILFDKMGLKGGRKGKSGDWSTDQNELERLERDGVPIARKILEWRQLA------------ 642

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                              +           Q      R H     +        ++DP+
Sbjct: 643 -------------------KLKSTYTDALQEQVNATTGRVHTSYSLVGAQTGRLSSTDPN 683

Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I         +R   IA+ G  L+ AD + IE R+ A MA      +AF  G+D++ 
Sbjct: 684 LQNIPIRTEVGRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDDIHA 743

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F     +V +D R   K +  ++ Y         +A    +  +    L+    
Sbjct: 744 ATAIELFG----EVNRDTRGKAKTVNFSILYGIS---RWGLAGRLEITPDEAQALI---- 792

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               + +          +  E A    +  T     +K W     R+           + 
Sbjct: 793 --SRYFERFPGISDYISDTLETARARGYTETLFG--RKTW---FPRI-----------KA 834

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             +N +A                                    G+ R+ +N   +     
Sbjct: 835 ANQNERA------------------------------------GSERAAINAPIQ----- 853

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYH 649
               G   + I +A++R  +   + +A  A   ++L VHDE+V E P+     A  ++  
Sbjct: 854 ----GTSADLIKRAMAR--MPGALADAGLADVKMLLQVHDELVFEAPEDKAAAAGEVIRA 907

Query: 650 LMTSNPSWAKGL--PLKAE 666
           +M      A  L  PL+ E
Sbjct: 908 VMMGAAEPALKLSVPLEVE 926


>gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 102/648 (15%), Positives = 191/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D     H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E ++         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVED--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD+ +   L    D   T+ ++         + +    ++L+  LF +  +     T+
Sbjct: 508 IAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13]
          Length = 851

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/502 (17%), Positives = 164/502 (32%), Gaps = 121/502 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           +   E  L  +  ++   G  VD          +  E  +L++E+ +L  G   +    +
Sbjct: 446 MEEIELPLVEVLASMEHTGVLVDQDGVRRFGDALSGEIRQLEEEIYTLA-GKQFNIASPK 504

Query: 238 KLKTWLFLETGLHLEDLTETTC-------QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           +L   LF +  +      + T          VL   +   P    +   R     ++   
Sbjct: 505 QLGQVLFEDLEIPHPQGKKKTKTGSFSTNAEVLEKLRGAYPIVSLILRYRQLTKLNSTY- 563

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++ +  DG                               R H    Q  T      
Sbjct: 564 VAGLLKTVAPDG-------------------------------RIHTCFKQTETRTGRIS 592

Query: 351 TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +++P+   I     +   +R   +A  G+ L+ AD + IE R+LA +  +    +AF +G
Sbjct: 593 STEPNMQNIPVRTELGKEMRKFFVAPRGRILLDADYSQIELRILANLCEDANMQQAFLSG 652

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++ +T A+ F V    VT   R+  K +   + Y  GA +  +     G+++      
Sbjct: 653 ADIHASTAAQVFGVPREAVTPQMRSAAKAVNFGIIYGIGAYSLSQ---DIGVSVREADRY 709

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +K       + +             E A    F+ T   R                    
Sbjct: 710 IK------RYLENFPRVEQFMTRIVEDAERTGFVSTLFGR-------------------- 743

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                            RR+VP +     K++  +   +GR          R  +NT  +
Sbjct: 744 -----------------RREVPEL-----KSHNKIQQAAGR----------RIAMNTPIQ 771

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                    G   + I  A+ R       +   +    ++L VHDE++ E    D   A+
Sbjct: 772 ---------GTAADIIKIAMIR---VYRRLAREQLDARLILQVHDELIVEAAVQDADRAA 819

Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666
           ++    M    +W   +PL AE
Sbjct: 820 VILREEMEH--AWDMAVPLTAE 839


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 103/659 (15%), Positives = 204/659 (30%), Gaps = 154/659 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            AF FD           D    + L+E  E  D   V+H    +  V  +   ++    +
Sbjct: 331 IAFSFDGTT-----LYSDVERLEDLREIFEREDCEFVSHEIK-DFLVKLSYKGIECK-SK 383

Query: 93  WICTLVLARSNGLPSALKAVGEALKLS--------SQKMEEGKELIARFCKGETHECLYD 144
           ++ T ++A       +   +   LK           +   +GK+        E     Y 
Sbjct: 384 YLDTAIMAYLLNPSESNYDLDRVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYI 443

Query: 145 RNKPNH----REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
             + NH    ++    F E          ++ K L      E  L  + +++   G+ +D
Sbjct: 444 CGRCNHLFELKDKLMSFIE--------EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLD 492

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
             +   L++ +D   +++  ++     G   +    ++L  +LF +  L +   T+T   
Sbjct: 493 RNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKTKTGYS 551

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
                 ++LT     V                               +++   ++     
Sbjct: 552 TDSEVLEQLTAYNDIVSE----------------------------IIEYRQLTKLKSTY 583

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGK 374
              F P       R H    Q++       +++P+   I         +R   I   +  
Sbjct: 584 IEGFLPLMD-ENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDG 642

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +V AD + IE RVLA ++ ++  ++AF   ED+++ T +  F V P  VT + R   KV
Sbjct: 643 YIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKV 702

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y         +A    ++       +        + +     +   E     A 
Sbjct: 703 VNFGIIYGISDY---GLAKDLKISRKEAKEYIDN------YFEKYKGVKEYIEKVIRFAK 753

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
           E+ ++                                       I  +RR +P +  +  
Sbjct: 754 ENGYV-------------------------------------TTIMNRRRYIPEINSRNF 776

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                           +     R  +NT                   +Q  + DI+   M
Sbjct: 777 T---------------QRSQAERLAMNTP------------------IQGSAADIIKMAM 803

Query: 615 MNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           +              ++L VHDE+V +T  D  E    +L   M +       +PL  E
Sbjct: 804 VKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVIK--LKVPLVVE 860


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 98/661 (14%), Positives = 211/661 (31%), Gaps = 158/661 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQV-LKEALE 62
           +D E+    D    G+    ++  ++ F+F   ++        H+   V  Q+ L+ A +
Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMSENEAFYVPLTHNYLGVSKQISLESAKK 370

Query: 63  NTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             ++      + HN  ++  +++  F L++P  ++  T++LA        +     AL+L
Sbjct: 371 AIELIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLALRL 429

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KR 174
            + +    + L+              + +           +Y   D  +T   +    K 
Sbjct: 430 FNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFLKN 476

Query: 175 LE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           LE PL       E +   +   + + G  +D      L +  + E   L +E+ +L    
Sbjct: 477 LEIPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIYTLCED- 535

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   LF +  L      +T     ++VL +     P   ++ + R   ++ 
Sbjct: 536 RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLHALLDKHPVITKILDYR-ELAKL 594

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                  L++    D                             + SR +    Q  T  
Sbjct: 595 YSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGTAT 625

Query: 347 PTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + DP+   I +        +SC +A +G      D + IE R+LA  + ++  L A
Sbjct: 626 GRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNA 685

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   ED++  T    F     +   + R++ K +   L Y  G   ++ ++    +  + 
Sbjct: 686 FTNDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHL 738

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                        K    +     + + 
Sbjct: 739 A--------------------------------------------KSYIEKYFENFTSIK 754

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                   +  +NG                        +   SGR          + Y +
Sbjct: 755 KYFETVKNEAKQNG-----------------------FITTLSGR----------KRYFD 781

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCETPD 638
               +  +   Y  +   +I+Q  + DI+   M+   K   +   ++L +HDE++ E  D
Sbjct: 782 FENAKPMQIAMYERESINSILQGSAADIIKLAMLEINKELNEDKKLILQIHDELIFEVKD 841

Query: 639 T 639
            
Sbjct: 842 D 842


>gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
 gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
          Length = 887

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 89/511 (17%), Positives = 172/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+  KL+ ++     G   +    ++L  
Sbjct: 489 EIPTARVLARMEMNGMKVETSTLIQLQNEFAVKLKKLEDKIYGQA-GEKFNLNSPKQLGH 547

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQIAKIQSTY-VKGLLDVI 606

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H    Q +T      + DP+   
Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+Q   +AF+TG D++  T
Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P +VT   R   K +   + Y         ++   G++       +     
Sbjct: 696 AMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E +P                            ++ + +++A ++ 
Sbjct: 750 -------------YFEQYP----------------------------QIKDYMNKAVQEA 768

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            + G A  I  +RR +P ++ KK          + R+         R+ +N+        
Sbjct: 769 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 806

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K          +V+ VHDE++ + P  +    
Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETI 855

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
          Length = 872

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 179/525 (34%), Gaps = 72/525 (13%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            +   AF F +  V   D        + LKE  E        H    +  V  +   ++ 
Sbjct: 328 EIKKIAFSFGNDTVY-IDGFQI----KDLKEIFEKEKFEFTTHEIK-DFLVKLSYKGIEC 381

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              +++ T ++A       +   +   LK   +      E +  F KG       D+ K 
Sbjct: 382 K-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEV--FGKG------RDKKKL 432

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRL----------EPLSSKEQELWYLDQTINDRGYC 198
                  L    C   V +  ++ ++L            L   E  L  + +++   G+ 
Sbjct: 433 EEIGEDILADYICSRCVHL-FDLREKLMNFIEEMDMKRLLLEIEMPLVEVLKSMEVSGFT 491

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           +D  +   L+Q ++    ++  ++     G   +    ++L  +LF +  L +   T+T 
Sbjct: 492 LDKEVLKELSQKINDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG 550

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
                   ++L P                    N +V  +         +++   ++   
Sbjct: 551 YSTDSEVLEQLVP-------------------YNNIVNDI---------IEYRQLTKLKS 582

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                F P      +R H    Q++T      +++P+   I         +R   I   +
Sbjct: 583 TYIDGFLPLMD-ENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAFIPRTK 641

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +V AD + IE RVLA ++G++  +++F   ED+++ T +  F V   +VT + R   
Sbjct: 642 DGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAA 701

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y         ++    ++       +        + +     +   E     
Sbjct: 702 KAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYIEKIVRF 752

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           A E+ ++ T   R ++   + +SR     ++  +        G A
Sbjct: 753 AKENGYVITIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSA 796


>gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1]
 gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1]
          Length = 1040

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 161/499 (32%), Gaps = 117/499 (23%)

Query: 165  VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +   +  ++R+  L   E  L  L + + D G  VD  L    +Q +  E  + +     
Sbjct: 624  ILTEQVEYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFE 683

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               G   +    ++L+  LF + GL     T+T       + ++L       F   +   
Sbjct: 684  -AIGREVNLSSPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYF 742

Query: 285  RSAVLKLNTLV---EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            R     L  +    + + SDGR+  T                                 Q
Sbjct: 743  RDRSKLLQVVRNLGDRIASDGRIHTT-------------------------------FGQ 771

Query: 342  IITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
             +       + DP+   I +       +R   IA      L+ AD + IE R++A ++G+
Sbjct: 772  TVAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGD 831

Query: 396  QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            +  + AF++GEDL+ +  A  F VAP  VT  QR   K     L Y   A     +A   
Sbjct: 832  EGLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAF---GLAGQL 888

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             ++     HL++T                                              S
Sbjct: 889  RISQGEAKHLMETYF--------------------------------------------S 904

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            R   + + L     +    G       RR                 LP  R+       N
Sbjct: 905  RFGAVRDYLEHIVSEARRVGYTETMWGRRRY---------------LPGLRATNRVVAEN 949

Query: 576  N-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              R+ LN   +         G   + + QA+ R    +  M A   G  I+L +HDE+V 
Sbjct: 950  ARRAALNAPIQ---------GSAADLMKQAMLR---VDAAMAAAGLGSRILLQIHDELVF 997

Query: 635  ET-PDTDEFNASMLYHLMT 652
            E  P   +    ++   MT
Sbjct: 998  EVAPGEVDALRRVVTEAMT 1016


>gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 102/648 (15%), Positives = 191/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D     H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E ++         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVED--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD+ +   L    D   T+ ++         + +    ++L+  LF +  +     T+
Sbjct: 508 IAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
 gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
          Length = 905

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 108/651 (16%), Positives = 176/651 (27%), Gaps = 170/651 (26%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           AF   D      D        +    A L +     + H++                   
Sbjct: 362 AFATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAK------------------ 403

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              +L LA        L  V     L +   + G+       +    E L  R  P   +
Sbjct: 404 -GPSLALAAR---GFTLAGVAADTALEAYLAQSGRRSFDL--EPLAEEVLGRRLSPAGAD 457

Query: 153 AWRLFGEYCKGDVTVTRE-------------IFKRLEP------LSSKEQELWYLDQTIN 193
                  +   D    R+             +  +L        L+  E  L  +   + 
Sbjct: 458 E-NQGTLFADEDAEAERQMAAAHAVLDLADALRGKLAETGAEQLLTDIELPLVGVLAEME 516

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D  L   L +    E  K      +       +    ++L+  LF   G+    
Sbjct: 517 QVGIAIDERLFQDLEKGFSGEAAKEVDAARAEAGVETLNLGSPKQLQEVLFENLGMPKTK 576

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQF 310
             +T       S   L  Q    F + +   R        +  L ++++ D R+  T   
Sbjct: 577 KIKTGYTTDADSLAWLQAQTQHPFLDHLLRWREVNRLKTVVEGLSKSVSPDTRIHTT--- 633

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
                                        +Q+I       + DP+   I         +R
Sbjct: 634 ----------------------------YNQMIAATGRLSSVDPNLQNIPIRTLEGQQIR 665

Query: 366 SCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
              IA  G + L+ AD + IE R++A ++ +   ++AF +GEDL+ T  A+ F+V    V
Sbjct: 666 KAFIAGPGYESLMTADYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAV 725

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
             + R   K M   L Y   A    +     G+     A                     
Sbjct: 726 EPEHRRRIKAMSYGLAYGLSAFGLSQ---QLGIETGEAA--------------------- 761

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                  K       R   + + LH    Q    G       RR
Sbjct: 762 -----------------------KMMEDYFQRFGGVRDYLHDLVVQARATGYTETMFGRR 798

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                            LP                L +  RQ  RE      L   I Q 
Sbjct: 799 RY---------------LP---------------DLASDNRQ-RREMAERMALNAPI-QG 826

Query: 605 VSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            + DI+   M+         +    ++L VHDE+V E    +      L  
Sbjct: 827 SAADIIKVAMIRVREGLREQQLKSRMLLQVHDELVLEIAPGEAPRVEELVR 877


>gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC]
 gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC]
          Length = 868

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/551 (17%), Positives = 175/551 (31%), Gaps = 69/551 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+   +       + S  +   L+            I   V A    L   L + G  +
Sbjct: 355 LKDFFADKATQFFGYRSKRDNHALRN---------SGIDVHVTADLV-LAEHLVSGGAKI 404

Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
              +  ME G  +    F K      L  ++ P     +  FG      + +   +F +L
Sbjct: 405 SFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPLQY--FGMLASKLLAIKNYLFVKL 462

Query: 176 EP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E         + EQ L  +   +   G  +D      L++ +  E  +  QE+  L  G 
Sbjct: 463 EEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDL-VGC 521

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             + +  ++L   L+   G+   D  ++T   VL + +       ++             
Sbjct: 522 EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEVLEALEDRHEIIPKIL------------ 569

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                               F    +         P Q      R H   +Q+ T     
Sbjct: 570 -------------------MFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRL 610

Query: 350 ITSDPDPLQII-----SDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
              DP+   I         +R    +  +    + AD + IE R LA ++ ++   +AF 
Sbjct: 611 SCQDPNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFN 670

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +GED++  T ++ FNV   QVTK QR   K +   L Y   A     ++    ++++   
Sbjct: 671 SGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGLVYGQQAY---GLSKILKISVSEAQ 727

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L+    A   +  A  F     E   ++      +G   ER+   W +           
Sbjct: 728 GLMDAYFAR--YPLAAEFITQTIEQASKNQKVTTMLGR--ERILSDW-ESSPGARAASGR 782

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNT 582
           L      T   G A    K   + +    + +     L+L     L++         + +
Sbjct: 783 L---AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRS 839

Query: 583 TTRQLTREYTY 593
             ++       
Sbjct: 840 LVQEKMESAME 850



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 595 GKLTENI-VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646
           G+L  N  +Q  + +++   M+N +           ++L +HDE++ E P  + E   S+
Sbjct: 781 GRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSL 840

Query: 647 LYHLMT 652
           +   M 
Sbjct: 841 VQEKME 846


>gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276]
 gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s]
 gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768]
 gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222]
 gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074]
 gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301]
          Length = 866

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/551 (17%), Positives = 175/551 (31%), Gaps = 69/551 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+   +       + S  +   L+            I   V A    L   L + G  +
Sbjct: 353 LKDFFADKATQFFGYRSKRDNHALRN---------SGIDVHVTADLV-LAEHLVSGGAKI 402

Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
              +  ME G  +    F K      L  ++ P     +  FG      + +   +F +L
Sbjct: 403 SFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPLQY--FGMLASKLLAIKNYLFVKL 460

Query: 176 EP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           E         + EQ L  +   +   G  +D      L++ +  E  +  QE+  L  G 
Sbjct: 461 EEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDL-VGC 519

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             + +  ++L   L+   G+   D  ++T   VL + +       ++             
Sbjct: 520 EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEVLEALEDRHEIIPKIL------------ 567

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                               F    +         P Q      R H   +Q+ T     
Sbjct: 568 -------------------MFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRL 608

Query: 350 ITSDPDPLQII-----SDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
              DP+   I         +R    +  +    + AD + IE R LA ++ ++   +AF 
Sbjct: 609 SCQDPNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFN 668

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +GED++  T ++ FNV   QVTK QR   K +   L Y   A     ++    ++++   
Sbjct: 669 SGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGLVYGQQAY---GLSKILKISVSEAQ 725

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L+    A   +  A  F     E   ++      +G   ER+   W +           
Sbjct: 726 GLMDAYFAR--YPLAAEFITQTIEQASKNQKVTTMLGR--ERILSDW-ESSPGARAASGR 780

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNT 582
           L      T   G A    K   + +    + +     L+L     L++         + +
Sbjct: 781 L---AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRS 837

Query: 583 TTRQLTREYTY 593
             ++       
Sbjct: 838 LVQEKMESAME 848



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 595 GKLTENI-VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646
           G+L  N  +Q  + +++   M+N +           ++L +HDE++ E P  + E   S+
Sbjct: 779 GRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSL 838

Query: 647 LYHLMT 652
           +   M 
Sbjct: 839 VQEKME 844


>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
 gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
          Length = 905

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/481 (15%), Positives = 147/481 (30%), Gaps = 122/481 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E+ L  +   +  +G  VD  +   +   ++ +   +++++  +  G+  +    ++L
Sbjct: 505 ELEEPLSIVLAEMERQGISVDREMLEQIGFELEKKIAVIEEDIYQIA-GVSFNINSPQQL 563

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF +  L      +T       + ++L  Q   V                       
Sbjct: 564 GKVLFEQLELPPLKKIKTGYSTDAETLEELAGQHCIVEK--------------------- 602

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   L+F    +           Q   R  + H    Q++T      +++P+   I
Sbjct: 603 -------ILEFRHLVKLNSTYVKGLLGQL--RDGKVHTTFQQMVTATGRLSSTEPNLQNI 653

Query: 360 I-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   + S G  +L  AD + IE RVLA  + +    ++F+TGED++  T 
Sbjct: 654 PIRMEEGRKLRKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTGEDVHARTA 713

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F V   QVT D R   K +   L Y         +A    +        ++      
Sbjct: 714 SEVFGVPLEQVTPDMRRKAKAVNFGLMYGLTDF---GLARDIRIPRKEAKFYIE------ 764

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                 +   R S +   L+ +    +E
Sbjct: 765 --------------------------------------RYFQRYSGVKKYLNDSVVNAME 786

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT-REYT 592
            G+                     L+  L     L ++         N T RQ   R   
Sbjct: 787 TGET------------------RTLLNRLRQTPELNHQ---------NRTVRQFGQRIAM 819

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                    +Q  + DI+   M+   +A      +++L VHDE++ E         + + 
Sbjct: 820 NSP------IQGTAADIMKLAMIRVDEAMKGLEANLLLQVHDELLLEVSARALPEVAQIV 873

Query: 649 H 649
            
Sbjct: 874 K 874


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 163/482 (33%), Gaps = 67/482 (13%)

Query: 129 LIARFCKGETHECLYDRNKP------NHREAWRLFGEYC-KGDVTVTREI------FKRL 175
           L A     E     +DR +          +A                  +         L
Sbjct: 440 LAAYLLNPEERNYAWDRLRAMLFAGEELPDAVDEVHPDAQGMAALALMHVLGPRIKSAGL 499

Query: 176 EPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           + L++  E  L  +   +   G  +D+         V+    +L + +     G   + R
Sbjct: 500 DELTANLEIPLIPVLADMEKAGITIDLDAFADFLTEVNERINELTRVIHERA-GEPFNIR 558

Query: 235 CLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++ T LF   GL     T      T   VL            +   R +  +     
Sbjct: 559 SSQQMATVLFDSLGLKPGGKTPKGALSTANSVLEKLSGQHEIITDILEYR-KMEKLRSTY 617

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L + +N++G                               R H   +Q+ T      
Sbjct: 618 LEPLPKLVNANG-------------------------------RIHTNFNQLATATGRLS 646

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +S P+   I         +R+C  A EG +L  AD + +E RVLA  +G+   + AFE  
Sbjct: 647 SSGPNLQNIPIRGDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSAFEHD 706

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T A  F+  PA VT D+R   K +   L Y  G    QK++   G+ +N     
Sbjct: 707 EDIHSRTAALLFDRDPADVTSDERRNAKTINFGLIYGMGP---QKLSRELGIKINEAKEF 763

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +       ++ +  +  +   ++  E   E  ++ T   R ++   + HS   ++ ++  
Sbjct: 764 IA------KYFEKLDVLKEFYDSVVEQGREKGYVTTLSGR-RRLLPELHSTSPQILSQAR 816

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTT 584
           +    T+  G A    K   + +    + K+    L+L     L+      N   +    
Sbjct: 817 RQAINTVIQGSAADIIKMAMIKVADNAEIKHLGGRLILQIHDELLVEGPEENIEEIGKLL 876

Query: 585 RQ 586
           ++
Sbjct: 877 QK 878


>gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 911

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 93/526 (17%), Positives = 185/526 (35%), Gaps = 67/526 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + + +   D+  +++N        KA  NL I        +++A    L S+   +   +
Sbjct: 398 VVKFISELDIKFISYN-------FKALLNLGISFKSMYMDMMIAYH--LISSQTKIDPII 448

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            ++     E K+    F K                +     G     D     E+   L+
Sbjct: 449 PITEYSKLEPKDFKTAFGKVNVELITAQDFSKYLSD--ISIGILAIYD-----ELNYLLK 501

Query: 177 P------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                  L   E  L  +   +  +G  +DV      +  ++ E  K+++ +     G  
Sbjct: 502 KEDLYKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEA-GEE 560

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L   LF++  L     T+T     +   + L      +              
Sbjct: 561 FNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI-------------- 606

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                         R  L +   ++         P       SR H   +QI T      
Sbjct: 607 -------------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTSFNQIGTATGRLS 652

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +S+P+   I         +R   IA EGK L+  D + +E RVL  M+ ++  ++A+   
Sbjct: 653 SSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREE 712

Query: 406 EDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           +DL+  T  R FN+  ++ V+++QR I K++  ++ Y         +A    + +   + 
Sbjct: 713 KDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASE 769

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +K     E++     F + + E   EH       G      K+      S+   + ++ 
Sbjct: 770 YIK--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQA 822

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +    T+  G A    K+  V +  + KDK ++ L+L     L++
Sbjct: 823 ERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHDELIF 868


>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 911

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 93/526 (17%), Positives = 185/526 (35%), Gaps = 67/526 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + + +   D+  +++N        KA  NL I        +++A    L S+   +   +
Sbjct: 398 VVKFISELDIKFISYN-------FKALLNLGISFKSMYMDMMIAYH--LISSQTKIDPII 448

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            ++     E K+    F K                +     G     D     E+   L+
Sbjct: 449 PITEYSKLEPKDFKTAFGKVNVELITAQDFSKYLSD--ISIGILAIYD-----ELNYLLK 501

Query: 177 P------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                  L   E  L  +   +  +G  +DV      +  ++ E  K+++ +     G  
Sbjct: 502 KEDLYKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEA-GEE 560

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L   LF++  L     T+T     +   + L      +              
Sbjct: 561 FNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI-------------- 606

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                         R  L +   ++         P       SR H   +QI T      
Sbjct: 607 -------------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTSFNQIGTATGRLS 652

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +S+P+   I         +R   IA EGK L+  D + +E RVL  M+ ++  ++A+   
Sbjct: 653 SSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREE 712

Query: 406 EDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           +DL+  T  R FN+  ++ V+++QR I K++  ++ Y         +A    + +   + 
Sbjct: 713 KDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASE 769

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +K     E++     F + + E   EH       G      K+      S+   + ++ 
Sbjct: 770 YIK--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQA 822

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +    T+  G A    K+  V +  + KDK ++ L+L     L++
Sbjct: 823 ERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHDELIF 868


>gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3]
          Length = 829

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 87/491 (17%), Positives = 155/491 (31%), Gaps = 129/491 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   +   G  +D        + V  +  K+ +E+     G   +    +
Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYA-GYEFNIGSPK 487

Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L + LF +  L     T+T       VL S     P    +   R    +     +  L
Sbjct: 488 QLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYRALT-KLQNTYVTGL 546

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ +  DG                               R H    Q  T      +++P
Sbjct: 547 LKVVGEDG-------------------------------RIHSTFKQTETRTGRISSAEP 575

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I     +   +R    A +G  LV AD + IE RVLA ++G++   KAF  G D++
Sbjct: 576 NIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T ++ FN     VT D R+  K +   + Y  GA +  K                   
Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKD------------------ 677

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                        IG +  +  +  R   S+ S + + + Q   
Sbjct: 678 -----------------------------IGVSVPKASEYIRSYLSKYSGIAHYMEQTVA 708

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +   +G       R                                 R Y+     +   
Sbjct: 709 KAKRDGYVETMFGR---------------------------------RRYIKELAAKNKN 735

Query: 590 EYTYGGKLTEN-IVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETPDT-DE 641
              +G ++ +N  +Q  + DI+   M+       ++G    ++L VHDE++ E  +   E
Sbjct: 736 LQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLEESGLDARLILQVHDELIVEAKEDCAE 795

Query: 642 FNASMLYHLMT 652
             A +L   M 
Sbjct: 796 KVALLLKEEME 806


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/663 (14%), Positives = 206/663 (31%), Gaps = 162/663 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60
           +D E+    D    G+    ++  ++ F+F   ++        H        +   L+ A
Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQI--SLQSA 368

Query: 61  LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  ++      + HN  ++  +++  F L++P  ++  T++LA        +     AL
Sbjct: 369 KKAIELIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+              + +           +Y   D  +T   +    
Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474

Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LE PL       E +   +   + + G  +D      L +  + E   L +E+ +L  
Sbjct: 475 KNLEAPLLELAKNCEFDFIRIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEIYTLCE 534

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL++     P   ++ + R   +
Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPIIPKILDYR-ELA 592

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                             + SR +    Q  T
Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC +A +G   +  D + IE R+LA  + ++  L
Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++  T    F     +   + R++ K +   L                G+  
Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLI--------------YGMGY 725

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            T +  +K  +                                    K    +     + 
Sbjct: 726 KTLSQNLKIEAHL---------------------------------AKSYIEKYFENFTS 752

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +         +  +NG       R+                                  Y
Sbjct: 753 IKKYFETVKNEAKQNGFITTLNSRKR---------------------------------Y 779

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + D++   M+   K   +   ++L +HDE++ E 
Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEIDKELNEDKKLILQIHDELIFEV 839

Query: 637 PDT 639
            D 
Sbjct: 840 KDD 842


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 887

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 108/671 (16%), Positives = 202/671 (30%), Gaps = 160/671 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           FA           D       P  LK  LE++ V     +    RT     + L I    
Sbjct: 344 FALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAES 398

Query: 93  WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               L+LA        ++              ++   E+  +            +N    
Sbjct: 399 LSFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDLEVYGKG-----------KNAKIP 447

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201
            +    F         +       L+ L   EQ+  Y         +   +   G  V  
Sbjct: 448 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 507

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260
           +    L     V   +L++++     G   +    ++L   LF + GL +   T+T    
Sbjct: 508 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 566

Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL+  K+ +P    +   R   S+     +  L++ ++                   
Sbjct: 567 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDE------------------ 607

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                       R  R H    Q +T      + DP+   I         +R   + S  
Sbjct: 608 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSP 655

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   +VT  QR  
Sbjct: 656 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 715

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y         ++    ++       +      E +E       +M      
Sbjct: 716 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFID-----EYFEQYPGIQAYM------ 761

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550
                                             +A +   E G A  I  +RR +P ++
Sbjct: 762 ---------------------------------DRAVKDAREKGYAETIMHRRRYLPDIH 788

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
            K           + RS         R+ +N+                   +Q  + DI+
Sbjct: 789 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 815

Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
              M+N  K          +V+ VHDE++ + P  +      +   +M +       +PL
Sbjct: 816 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 873

Query: 664 KAE-GYESKRY 673
            A+ G+    Y
Sbjct: 874 VADAGWGHDWY 884


>gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 882

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 153/410 (37%), Gaps = 48/410 (11%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             +E+   L      E  L  +  ++  +G  +D       +  ++ +   L++E+    
Sbjct: 472 KEKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEA 528

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G   +    ++L   LFL+  L     T+T     +   + L+ Q  Q+  N +     
Sbjct: 529 -GEEFNINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLL----- 582

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                 ++   ++         P        R H    QI T  
Sbjct: 583 ----------------------EYRKLAKLKNTYVDPIPKMV-KFDDRIHTCYHQIGTVT 619

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +SDP+   I         +R   IA +G KL+  D + +E RVLA ++ ++  +KA
Sbjct: 620 GRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKA 679

Query: 402 FETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           ++  +DL+  T  + F +    +V+++QR + K++  ++ Y         +A   G+++ 
Sbjct: 680 YQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPF---GLAKELGISVK 736

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +K      ++     F   + E   +H   + + G      K+     HS+   +
Sbjct: 737 DAAEYIK--RYFAQYPRVAQFETEIIEFAEQHGYVETYFGR-----KRIIDGIHSKNRMV 789

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            N+  +    T+  G A    K+  + +      K ++ L+L     L++
Sbjct: 790 KNQAERMAVNTVVQGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIF 839


>gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
 gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
          Length = 887

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 89/511 (17%), Positives = 171/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+  +L+ ++     G   +    ++L  
Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFTVKLKELEDKIYGQA-GEKFNLNSPKQLGH 547

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H    Q +T      + DP+   
Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+Q   +AF+TG D++  T
Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P QVT   R   K +   + Y         ++   G++       +     
Sbjct: 696 AMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E +P                            ++ + + +A ++ 
Sbjct: 750 -------------YFEQYP----------------------------QIKDYMDKAVQEA 768

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            + G A  I  +RR +P ++ KK          + R+         R+ +N+        
Sbjct: 769 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 806

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K          +V+ VHDE++ + P  +    
Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 855

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
 gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
          Length = 847

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 101/677 (14%), Positives = 208/677 (30%), Gaps = 167/677 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEA 60
           +  D ET + ID  +           ++ F+F   ++        H          L+ A
Sbjct: 287 IAFDTET-TSIDTKEA---------KIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSA 336

Query: 61  LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  ++      + HN  ++  +++  F L +P  ++  T++LA        +     AL
Sbjct: 337 KKAIELIFKHFIIGHNLKYDFKIIENNFKLSLP-QKYADTMILAWLKNPSLRVNMDDLAL 395

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172
           +L + +    + L+              + +           +Y   D  +T   +    
Sbjct: 396 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 442

Query: 173 KRLEPLSSKEQELWYLD-----QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           K LEP      + +  D       + + G  +D      L +  + E   L +E+ +L  
Sbjct: 443 KNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCE 502

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    +++   LF +  L      +T     ++VL+      P   ++ + R   +
Sbjct: 503 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYR-ELA 560

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        L++    D                               SR +    Q  T
Sbjct: 561 KLYSTYCEPLLKLALKD-----------------------------ENSRIYSSFLQTGT 591

Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 + DP+   I +        +SC IA EG   +  D + IE R+LA  + ++  L
Sbjct: 592 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLL 651

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+  ED++  T    F     +   + R+I K +   L Y  G   ++ ++    +  
Sbjct: 652 NAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMG---YKTLSKNLKIEA 704

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           N                                              K    +     + 
Sbjct: 705 NLA--------------------------------------------KTYIEKYFENFTS 720

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           + +   +   +   NG                        +   SGR          + Y
Sbjct: 721 IKSYFEKVKNEAKANG-----------------------FISTLSGR----------KRY 747

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---DIVLTVHDEIVCET 636
            +    +  +   Y  +   +I+Q  + DI+   M+   K       ++L +HDE++ E 
Sbjct: 748 FDFENAKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEV 807

Query: 637 -PDTDEFNASMLYHLMT 652
             +  E        +M 
Sbjct: 808 KDELCENFVKKTSDIME 824


>gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 884

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 153/410 (37%), Gaps = 48/410 (11%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             +E+   L      E  L  +  ++  +G  +D       +  ++ +   L++E+    
Sbjct: 474 KEKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEA 530

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G   +    ++L   LFL+  L     T+T     +   + L+ Q  Q+  N +     
Sbjct: 531 -GEEFNINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLL----- 584

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                                 ++   ++         P        R H    QI T  
Sbjct: 585 ----------------------EYRKLAKLKNTYVDPIPKMV-KFDDRIHTCYHQIGTVT 621

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +SDP+   I         +R   IA +G KL+  D + +E RVLA ++ ++  +KA
Sbjct: 622 GRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKA 681

Query: 402 FETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           ++  +DL+  T  + F +    +V+++QR + K++  ++ Y         +A   G+++ 
Sbjct: 682 YQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPF---GLAKELGISVK 738

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +K      ++     F   + E   +H   + + G      K+     HS+   +
Sbjct: 739 DAAEYIK--RYFAQYPRVAQFETEIIEFAEQHGYVETYFGR-----KRIIDGIHSKNRMV 791

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            N+  +    T+  G A    K+  + +      K ++ L+L     L++
Sbjct: 792 KNQAERMAVNTVVQGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIF 841


>gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec]
 gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec]
          Length = 911

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 95/626 (15%), Positives = 171/626 (27%), Gaps = 149/626 (23%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
                 +   L + L + D     H+       L         +        LA    LP
Sbjct: 384 LTAGDSV--ALGDWLADPDRAKAGHDLKGPMLALAEA---GFTLAGVTSDTALAAYLALP 438

Query: 107 S--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC--- 161
              +      AL+           L                +     +            
Sbjct: 439 GQRSFDLADLALRY----------LHRELKSDAPSNGQLTLDGSGEADEAEADAIRARAA 488

Query: 162 -----KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
                  D  + R    RL  L   E  L  +  T+   G   D      L +    E +
Sbjct: 489 LELADALDGDLERRSAARL--LREMELPLVTILATMERAGIAADEDHLLELQKHYGGEVS 546

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            +  +   +  G   +    ++L+  LF E  L      +T       +   L  Q+   
Sbjct: 547 DVAAQAHGI-VGRTFNLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDHP 605

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                                      +   L     +R       + P   +    R H
Sbjct: 606 L--------------------------IPVLLHHRDVARLKTVVDSLIPM--IDDAGRIH 637

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLA 390
              +Q+I       ++DP+   I         +R   +  +G   L+ AD + IE R++A
Sbjct: 638 TTFNQMIAATGRLSSTDPNLQNIPIRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMA 697

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G+   ++AF +GEDL+    A++F +  ++V  + R   K M   L Y   A     
Sbjct: 698 HLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAF---G 754

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A   G+  +                                              ++  
Sbjct: 755 LAGQLGIAPDEA--------------------------------------------REQM 770

Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
               +R   + + L    +Q   +G    I  +RR +P +                    
Sbjct: 771 DAYFARFGGVRDFLRGVVDQARRDGYTETIMGRRRYLPDL-------------------- 810

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
                       T+     R+      L   I Q  + DI+   M+   +A         
Sbjct: 811 ------------TSDNTQRRQMAERMALNAPI-QGSAADIIKIAMLGVGRALRSRDLSSR 857

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYH 649
           ++L VHDE+V E    +      L  
Sbjct: 858 LLLQVHDELVLEIAPGERAEVEALVR 883


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 108/671 (16%), Positives = 202/671 (30%), Gaps = 160/671 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           FA           D       P  LK  LE++ V     +    RT     + L I    
Sbjct: 344 FALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAES 398

Query: 93  WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               L+LA        ++              ++   E+  +            +N    
Sbjct: 399 LTFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDLEVYGKG-----------KNAKIP 447

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201
            +    F         +       L+ L   EQ+  Y         +   +   G  V  
Sbjct: 448 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 507

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260
           +    L     V   +L++++     G   +    ++L   LF + GL +   T+T    
Sbjct: 508 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 566

Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL+  K+ +P    +   R   S+     +  L++ ++                   
Sbjct: 567 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDE------------------ 607

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                       R  R H    Q +T      + DP+   I         +R   + S  
Sbjct: 608 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSP 655

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   +VT  QR  
Sbjct: 656 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 715

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y         ++    ++       +      E +E       +M      
Sbjct: 716 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFID-----EYFEQYPGIQAYM------ 761

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550
                                             +A +   E G A  I  +RR +P ++
Sbjct: 762 ---------------------------------DRAVKDAREKGYAETIMHRRRYLPDIH 788

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
            K           + RS         R+ +N+                   +Q  + DI+
Sbjct: 789 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 815

Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
              M+N  K          +V+ VHDE++ + P  +      +   +M +       +PL
Sbjct: 816 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 873

Query: 664 KAE-GYESKRY 673
            A+ G+    Y
Sbjct: 874 VADAGWGHDWY 884


>gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 514

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 98/528 (18%), Positives = 188/528 (35%), Gaps = 73/528 (13%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            + +   D+  +++N        KA  NL          +++A    L S+   +   L 
Sbjct: 2   IKFIAELDIKFISYN-------FKALLNLGFTFKSMYMDMMIAYH--LISSQTKMDVLLP 52

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           ++     E K+    F K      L D             G     D     EI   L  
Sbjct: 53  ITEYSKVEAKDFKTTFGKTHIETLLVDEFARYLSN--IGLGILACYD-----EINHLLHK 105

Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                 L   E  L  +   +  +G  +DV+     +  ++ E  K ++ +     G   
Sbjct: 106 EELHNILIQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKTEKAIYEEA-GEEF 164

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF++  L     T+T       VL   +       ++  +  + ++   
Sbjct: 165 NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKT 224

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             ++TL   ++S                                SR H   +QI T    
Sbjct: 225 TYVDTLPNLVDS-------------------------------NSRIHTSFNQIGTATGR 253

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +S+P+   I         +R   +A EGK L+  D + +E RVL  M+ ++  +KA+ 
Sbjct: 254 LSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIKAYR 313

Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             +DL+  T  R FN+     VT++QR I K++  ++ Y   A     +A    + +   
Sbjct: 314 EEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAF---GLAKELKIPVKDA 370

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           +  +K     E++     F + + E   EH       G      K+      S+   +  
Sbjct: 371 SEYIK--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKA 423

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +  +    T+  G A    K+  + +  + KDK+++ L+L     L++
Sbjct: 424 QAERMAVNTVIQGTAAEVLKKVMLKVYEVLKDKDDIALLLQVHDELIF 471


>gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
 gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
          Length = 907

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 93/550 (16%), Positives = 196/550 (35%), Gaps = 77/550 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-------GLPS 107
             +KE   N+D   + +N        K   N  I I      L++A          G+  
Sbjct: 392 DKVKEFFRNSDSIFITYN-------FKPLLNEGIKIKNMDMDLMIAYHLISSQTKEGVEI 444

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L+ +   + ++    + GKE        E  + L +R+K         +G         
Sbjct: 445 PLEQLS-GIDIAPYSEKFGKEAPGNLSTEEYGKFLVERSK----GIMETYG-------IA 492

Query: 168 TREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
             EI  +  LE L   E  L  +   +  +G  +D        + +++    L +++  +
Sbjct: 493 MEEIKGKNLLEVLKETEMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLNNLQKKIFEI 552

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF +  L     T+T         +KL    +++ +       
Sbjct: 553 A-GEEFNLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDEEVLEKLKNDGVEIASY------ 605

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                 L++   ++         P     R  R H   +QI T 
Sbjct: 606 ---------------------ILEYRKYAKLKNTYVDALPKLADSRD-RLHTTFNQIGTT 643

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +S+P+   I         +R   IA  G  L+  D + IE RVLA ++ ++  + 
Sbjct: 644 TGRLSSSNPNLQNIPVKTDEGMKIRQGFIADNGNVLMGIDYSQIELRVLAELSKDENLIA 703

Query: 401 AFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           A++  EDL+  T  + F +    +V+++QR I K +  ++ Y   A     ++   G+  
Sbjct: 704 AYKNNEDLHRVTAKKIFELEDGEEVSREQRIIAKTINFSIIYGKTAF---GLSKELGITQ 760

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 +  N   E++   ++F + +     ++   + + G      ++      S+   
Sbjct: 761 KEATDYI--NRYFEQYPKVKDFEKSIIAYAEKNGYTETYFGR-----RRIIEGILSKNKN 813

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGN 575
           + N+  +    ++  G A    K+  + +  + ++K ++ L+L     L++      V  
Sbjct: 814 IKNQAERMAVNSVIQGTAAEILKKVMIEIFKVIENKEDISLLLQVHDELIFEIKEEKVEE 873

Query: 576 NRSYLNTTTR 585
            R+ +    R
Sbjct: 874 YRTTIENIMR 883


>gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6]
          Length = 861

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 128/382 (33%), Gaps = 39/382 (10%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  L  +   +   G  VD          +  E   +   +   T     +    +
Sbjct: 461 YNDIEFPLAQVLADMTRIGILVDKEGIEKFGVKMRSELEDVLTRIHMETGSASFNPNSPK 520

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLV 295
           +L   LF   GL     T+        + + L   P    +   R    +     +  L+
Sbjct: 521 QLGEMLFDTMGLPHGKKTQRGWSTDAETLEALRDYPLVEDILQYR-AYQKLNSTYVEGLL 579

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + +  DGR+        A RTGR S      QN+P  +                      
Sbjct: 580 KVIAEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIPIRTE--------------------- 617

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
               +   +R+  +A  G  LV AD + IE R+LA + G++   +AF TGED++ +T A+
Sbjct: 618 ----LGSQLRAYFVARPGCVLVDADYSQIELRILAHVTGDEHMQQAFLTGEDIHRSTAAK 673

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            + +   QVT   R+  K +   + Y  GA +        G+++      +K   A    
Sbjct: 674 IYGLPLEQVTPRLRSSAKAINFGIMYGKGAYSLS---KDIGVSVKEADAFLKNYLATFPK 730

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                      +     A    ++ T   R +++  +  S    +     +    T   G
Sbjct: 731 ------VSGYMDKTISDARSCGYVSTLFGR-RRSLPELASNNHNIRASGERMARNTPIQG 783

Query: 536 KAIIARKRRDVPLVYMKKDKNN 557
            A    K   V +    +D+  
Sbjct: 784 TAADVIKLAMVRVWRRLRDEKM 805


>gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
 gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
          Length = 878

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 149/505 (29%), Gaps = 137/505 (27%)

Query: 175 LEPLSSKEQELWYLDQT---------INDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           LE L   E E  YL            +   G  V+          +     +L++ +   
Sbjct: 466 LEKLREAEMEELYLTIERPTVATLYDMEKYGITVEKDALKEYGDQLVGRIEELEKNIYEQ 525

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L   LF +  +     T+T       +L       P    +   R  
Sbjct: 526 A-GKTFNINSPKQLGVILFEDLKMPFAKKTKTGYSTSADILEKLAPDYPIVSNILEYRQL 584

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
               +    + L   +  DG+                                H    Q 
Sbjct: 585 TKLKSTYA-DGLAAFIQEDGK-------------------------------IHSIFHQK 612

Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +T      +SDP+   I     +   +R   +   G   V AD + IE RVLA MAG++ 
Sbjct: 613 VTATGRLSSSDPNLQNIPIRMPLGRAIRKVFVPDSGYVFVSADYSQIELRVLAHMAGDEH 672

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + A+  GED++  T ++ F V   +VT   R   K +   + Y   A     ++    +
Sbjct: 673 LIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNFGIVYGISAF---GLSQDLKI 729

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                   A  +       +P                           
Sbjct: 730 SRKE----------------ASEYIDKYFATYP--------------------------- 746

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                       +T  +G    A+K   V  +Y +       +   S  + + R  G  R
Sbjct: 747 ----------GIKTYLDGNVAFAKKEGYVKTLYGRVR----PIPELSSSNFMQRSFGE-R 791

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
             +N++                  +Q  + DI+   M+         K    ++L +HDE
Sbjct: 792 VAMNSS------------------IQGTAADIIKIAMIRVSKRLQEEKLASRLILQIHDE 833

Query: 632 IVCETPDTDEFNASML--YHLMTSN 654
           ++ ET + +      +    +M + 
Sbjct: 834 LLIETKEDEVEEVRKILKEEMMGAA 858


>gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
 gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
          Length = 829

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/491 (17%), Positives = 152/491 (30%), Gaps = 129/491 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   +   G  +D        + V  +  K+ +E+     G   +    +
Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYA-GYEFNIGSPK 487

Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L + LF +  L     T+T       VL S     P    +   R    +     +  L
Sbjct: 488 QLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYRALT-KLQNTYVTGL 546

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ +  DG                               R H    Q  T      +++P
Sbjct: 547 LKVVGEDG-------------------------------RIHSTFKQTETRTGRISSAEP 575

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I     +   +R    A +G  LV AD + IE RVLA ++G++   KAF  G D++
Sbjct: 576 NIQNIPVRTPLGREMRRFFTAKDGCLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T ++ FN     VT D R+  K +   + Y  GA +  K                   
Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKD------------------ 677

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                        IG +  +  +  R   S+ S + + + Q   
Sbjct: 678 -----------------------------IGVSVPKASEYIRSYLSKYSGIAHYMEQTVA 708

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +   +G       R                                 R Y+     +   
Sbjct: 709 KAKRDGYVETMFGR---------------------------------RRYIKELAAKNKN 735

Query: 590 EYTYGGKLTEN-IVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT-DE 641
              +G ++ +N  +Q  + DI+   M+              ++L VHDE++ E  +   E
Sbjct: 736 LQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKESGLDARLILQVHDELIVEAKEDCAE 795

Query: 642 FNASMLYHLMT 652
             A +L   M 
Sbjct: 796 KVALLLKEEME 806


>gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
 gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
          Length = 880

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 89/523 (17%), Positives = 160/523 (30%), Gaps = 130/523 (24%)

Query: 149 NHREAWRLFGEYCKGDVTVTREI-------FKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
              E    +  Y          +        + LE     E  L Y    + + G  V+ 
Sbjct: 444 EQPEELAQYACYLAYTAKAAMPVILQKLRENQMLELFRDMEMPLVYTLYDMQEVGIRVNA 503

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                  + + V   +L+QE+     G   +    ++L   LF +  L     T++    
Sbjct: 504 QELKAYGEELYVRIVELEQEIYRDA-GEEFNINSPKQLGVILFEKLKLPGAKKTKSGFST 562

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
                +KL P    V                               L++   ++      
Sbjct: 563 AADVLEKLAPDYAIVAK----------------------------ILEYRQLAKLKSTYA 594

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376
                  +    R H   +Q IT      ++DP+   I     +   +R   IA EG  L
Sbjct: 595 DGLAGF-IAADGRIHGTFNQTITATGRISSTDPNLQNIPVRTELGRLLRKVFIAKEGYVL 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RVLA M+G++  + AF    D++  T ++ F++   +VT  QR   K + 
Sbjct: 654 IDADYSQIELRVLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEVTPLQRRNAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y   A     ++    +++      +                              
Sbjct: 714 FGIVYGISAF---GLSEDLHISVKEAGEYIDKYF-------------------------- 744

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDK 555
                          Q + +V +    L  A ++  E G A  +  +RR VP        
Sbjct: 745 ---------------QTYPKVKDF---LDNAVKEAKEKGYAETLFHRRRPVP-------- 778

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM- 614
                 L SG  +        R  +N+  +                    + DI+   M 
Sbjct: 779 -----ELKSGNFMQRSF--GERVAMNSPIQG------------------TAADIIKIAMI 813

Query: 615 -----MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLM 651
                + A +    ++L +HDE++ E  P   E    +L   M
Sbjct: 814 RVNERLRAEQFQSRLILQIHDELLIEAEPSEVEAVKELLAQEM 856


>gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 887

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 89/511 (17%), Positives = 172/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+  KL+ ++     G   +    ++L  
Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKKLEDKIYGQA-GEKFNLNSPKQLGH 547

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQIAKIQSTY-VKGLLDVI 606

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H    Q +T      + DP+   
Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+Q   +AF+TG D++  T
Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P +VT   R   K +   + Y         ++   G++       +     
Sbjct: 696 AMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E +P                            ++ + +++A ++ 
Sbjct: 750 -------------YFEQYP----------------------------QIKDYMNKAVQEA 768

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            + G A  I  +RR +P ++ KK          + R+         R+ +N+        
Sbjct: 769 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 806

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K          +V+ VHDE++ + P  +    
Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETI 855

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|332687082|ref|YP_004456856.1| DNA polymerase I [Melissococcus plutonius ATCC 35311]
 gi|332371091|dbj|BAK22047.1| DNA polymerase I [Melissococcus plutonius ATCC 35311]
          Length = 887

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 97/633 (15%), Positives = 196/633 (30%), Gaps = 142/633 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113
           Q   + L +       +++    T L         I    +    L  +N   + ++ V 
Sbjct: 365 QAFIDWLFDETCQKQVYDAKRTYTALNRYVGKMQGISFDILLAAYLLNTNDTNTDIECVA 424

Query: 114 EALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                +  + +E   +  R  K    +  E  Y+ +  +  +A     E    D+ V + 
Sbjct: 425 RQYGYTDIQSDE--AVYDRGAKKKVPQEKEIFYN-HLAHKIKAIEYLSEKLAADL-VEKN 480

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                  +   E  L  +   +   G  VD      +      +   ++Q++ +   G  
Sbjct: 481 QANLFSEM---ELPLSRILADMEITGIHVDAHRLEEMQGEFSDQLKAIEQKIYTEA-GEE 536

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF + GL +   T+T       VL   K+  P    +   R  A   +
Sbjct: 537 FNINSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKERAPIVEDILIYRQIAKIQS 596

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L++ +  D ++                               H    Q +T   
Sbjct: 597 TY-VEGLLKVIQPDHKV-------------------------------HTRYLQTLTQTG 624

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              + DP+   I         +R   I  E    +  +D + IE RVLA ++ ++    A
Sbjct: 625 RLSSVDPNLQNIPIRLEEGRKIRQAFIPREKDWLIYSSDYSQIELRVLAHISNDEHLKAA 684

Query: 402 FETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F   +D++ +T  R FN++ P +VT + R   K +   + Y         ++    ++  
Sbjct: 685 FLEQQDIHASTAMRVFNLSSPEEVTPNMRRQAKAVNFGIVYGISDY---GLSKNLEISRQ 741

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +                                           +  K+  V   
Sbjct: 742 QAQQYI-----------------------------------------DTYFNKYPSVKTY 760

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             E+ +  +   +     +  +RR +  +  +           + RS         R+ +
Sbjct: 761 MEEIVREAKD--KGYVETLYHRRRYLKDINSRNY---------NLRSFA------ERTAI 803

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634
           NT                   +Q  + DIL   M+   +          ++L VHDE+V 
Sbjct: 804 NTP------------------IQGSAADILKIAMIQMDRRLKEENIQATMLLQVHDELVF 845

Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E P  + E    ++  +M    S    +PL A+
Sbjct: 846 EVPAAELEKLDKIVKEVMEKCVS--LTVPLIAD 876


>gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH]
 gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH]
          Length = 872

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 213/674 (31%), Gaps = 169/674 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV 56
             +  D ET S             E+  ++ F+F ++ +        H        +P+ 
Sbjct: 320 KIVAFDTETDS------------LENPNIVGFSFAYEKNKAYYVPINHFYLGVTDQIPEK 367

Query: 57  -LKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              +A++   D  ++ HN  F+  +LK    L+IP      T++LA      S +     
Sbjct: 368 TALKAIQKILDKKVIGHNLKFDFKMLKKY-GLEIPTPH-ADTMILAWILDPDSPVGLDSV 425

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    +  + KE+I              + K       +   +Y   D  ++ ++++ 
Sbjct: 426 AKRYLDHQNIKFKEVIG-------------KRKNFSEVDIQEAAKYAAEDALISLKLYEI 472

Query: 175 LEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           L+          + + E     L   I  +G  +D+     L      +   L QE+   
Sbjct: 473 LKEKLWEEVKWDIENIEMPFINLLIDIESQGIKLDIEYMQKLQTETTEKLENLTQEIYRY 532

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMR 282
             G   + +  ++L   LF    L ++  T+T     ++VL+S K   P   ++   R  
Sbjct: 533 A-GSEFNIKSTKQLAHILFEVLKLPVKRKTKTGYSTDEKVLTSLKGTHPIIEKLLEYRKL 591

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
               +   +                           ++             + +    Q 
Sbjct: 592 DKLLSTYIIP-----------------------LQEYAKKDPN-------HKIYTNFLQT 621

Query: 343 ITHLPTSITSDPDPLQIISD---CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            T      + +P+   I +     +R   +A   K+ V  D + IE R+LA  + ++  +
Sbjct: 622 GTATGRLSSKNPNLQNIPTSTDINIRDAFVAE--KEFVSLDYSQIELRLLAHFSKDEHLI 679

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   +D+++ T  + F        K+ R + K +   L Y              G+  
Sbjct: 680 NAFLEDKDIHLETAVKIFG---ENRAKEYRPVAKSINFGLIY--------------GMGP 722

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              +  +  ++     ++A+ F      + P        + T  E  K   R        
Sbjct: 723 KKLSETINVST-----KEAKEFIEKYFASFPT-------VKTFLENTKIEAR-------- 762

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 + + +T                              L   R        N R+ 
Sbjct: 763 -----EKGYVET------------------------------LLKRRRFFDFAAANARTL 787

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCETP 637
            N       RE          I Q  + DI+ + M+   +      ++L +HDE++ E  
Sbjct: 788 AN-----FERE------AVNTIFQGSAADIIKKAMIEIKQRFPKAKMLLQIHDELIFEID 836

Query: 638 DTDEFNASMLYHLM 651
             DE  A     +M
Sbjct: 837 SRDE--AYEYKKIM 848


>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 872

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 179/525 (34%), Gaps = 72/525 (13%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            +   AF F +  V   D        + LKE  E        H    +  V  +   ++ 
Sbjct: 328 EIKKIAFSFGNDTVY-IDGFQI----KDLKEIFEKEKFEFTTHEIK-DFLVKLSYKGIEC 381

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              +++ T ++A       +   +   LK   +      E +  F KG       D+ K 
Sbjct: 382 K-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEV--FGKG------RDKKKL 432

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRL----------EPLSSKEQELWYLDQTINDRGYC 198
                  L    C   V +  ++ ++L            L   E  L  + +++   G+ 
Sbjct: 433 EEIGEDILADYICSRCVHL-FDLREKLMNFIEEMDMKRLLLEIEMPLVEVLKSMEVSGFT 491

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           +D  +   L+Q ++    ++  ++     G   +    ++L  +LF +  L +   T+T 
Sbjct: 492 LDKEVLKELSQKINDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG 550

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
                   ++L P                    N +V  +         +++   ++   
Sbjct: 551 YSTDSEVLEQLVP-------------------YNNIVNDI---------IEYRQLTKLKS 582

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                F P      +R H    Q++T      +++P+   I         +R   I   +
Sbjct: 583 TYINGFLPLMD-ENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAFIPRTK 641

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +V AD + IE RVLA ++G++  +++F   ED+++ T +  F V   +VT + R   
Sbjct: 642 DGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAA 701

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y         ++    ++       +        + +     +   E     
Sbjct: 702 KAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYIEKIVRF 752

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           A E+ ++ T   R ++   + +SR     ++  +        G A
Sbjct: 753 AKENGYVITIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSA 796


>gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium glutamicum ATCC 13032]
          Length = 905

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 160/528 (30%), Gaps = 138/528 (26%)

Query: 164 DVTVTREIFKRLEPLSSKEQ--ELWY--------LDQTINDRGYCVDVALAHTLNQIVDV 213
           DV    E+ + L     + Q  EL++        +   +   G  VDVA      +    
Sbjct: 477 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 536

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           +  + ++    L      +    ++L+  LF   G+     T+T      +  + L  + 
Sbjct: 537 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 596

Query: 274 IQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
              F + + A R        L  L+  +  DGR+  T                       
Sbjct: 597 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTT----------------------- 633

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384
                    +Q +       ++DP+   I         +RS  +  EG   L+ AD + I
Sbjct: 634 --------FNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQI 685

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RV+A ++ +   ++A+  GEDL+    ++ FNV    VT + R   K M   L Y   
Sbjct: 686 EMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLS 745

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A    +  S                                                   
Sbjct: 746 AFGLSQQLSI-----------------------------------------------PAG 758

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             K+       R   +   L +  E+  + G       RR                 LP 
Sbjct: 759 EAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRY---------------LPE 803

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621
                            T+  ++ RE      L   I Q  + DI+   M+   ++    
Sbjct: 804 L----------------TSDNRVARENAERAALNAPI-QGTAADIIKVAMIRVDRSLKEA 846

Query: 622 ---YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
                ++L VHDE+V E    + E    +L   M +       +PL+ 
Sbjct: 847 AVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEV 892


>gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 886

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/565 (15%), Positives = 185/565 (32%), Gaps = 76/565 (13%)

Query: 34  AFGFDDHPVELWDCVHDPVM--PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            F   +   E W    DP +     ++  L N+ +     N+  +   L     L I + 
Sbjct: 341 GFALGND--EQWLVSRDPELLKAPEVQNWLTNSKIKKDVFNAKAQIVGLNR---LGISLD 395

Query: 92  RWICTLVLARSN----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                L+LA          + L  +         + +E  E+  +  K         R  
Sbjct: 396 GIDFDLLLASYLLNTNDNSNDLGKLAHEHGYDDVQTDE--EVYGKGAK---------RTI 444

Query: 148 PNHREAWRLFGEYCKGDVTVTR-------EIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
           P+  + +          +   R       E  ++L   +  E  L ++   +   G  VD
Sbjct: 445 PDDDQLFFQHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLAKMEITGVHVD 504

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
                 +   +    T++++++     G   +    ++L   LF +  L +   T+T   
Sbjct: 505 AQTLKNMGSKLTERLTEIEEQIYQEA-GEEFNINSTKQLGKILFEKLKLPVIKKTKTGYS 563

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
             +   +KL PQA  V N                             LQ+   S+     
Sbjct: 564 TAVDVLEKLAPQAPIVEN----------------------------ILQYRQISKLQSTY 595

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGK 374
                        + H    Q +T      + DP+   I         +R   + S EG 
Sbjct: 596 IKGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRQAFVPSHEGW 655

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGK 433
           ++  +D + +E RVLA + G+    + F+ GED++ +T  R F++ P  ++ ++ R   K
Sbjct: 656 QIFSSDYSQVELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAK 715

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y         +A    ++ +     ++  +  +E+   +++     E   ++ 
Sbjct: 716 AVNFGIVYGISDY---GLAQRIHVSRSQAHEFIQ--NYFKEFPKVKDYIHDTIEFARQNG 770

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMK 552
             +          ++     +S+     +   +    T   G A    K   + +   ++
Sbjct: 771 YVETITHR-----RRYLPDINSKSFSRRSFAERTAMNTPIQGSAADIIKIAMIKMQDELE 825

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNR 577
           K +    ++L     LV+       
Sbjct: 826 KRQLKAKMLLQIHDELVFEAPKEEI 850


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 83/512 (16%), Positives = 157/512 (30%), Gaps = 132/512 (25%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           + +E   +L      E  L ++  ++   G+ ++ ++   L    D E  +  +E+  L 
Sbjct: 546 IEKEKMDKL--YYEVEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYELA 603

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283
                +    ++L   LF +  L +   T+T     Q VL           ++   R   
Sbjct: 604 D-EEFNVSSPKQLGKILFEKLDLPIIKKTKTGYSTNQEVLEKLLDKHEIIPKIMYYRQIT 662

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
             S+   +  L   ++ DGR+                               H   +Q +
Sbjct: 663 KISSTY-VEGLKNVIDEDGRI-------------------------------HSNFNQTV 690

Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
           T      ++DP+   I     +   +R   I   EG  LV  D + IE RVLA +AG++ 
Sbjct: 691 TTTGRLSSTDPNLQNIPIRHELGREIRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDEN 750

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF+   D++  T +  F V    VT   R+  K +   + Y   A +  +       
Sbjct: 751 MIDAFKHHSDIHTKTASEVFKVPVEDVTSLMRSRAKAVNFGIVYGISAFSLSQDLKI--- 807

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                              +A+ +     E +P                           
Sbjct: 808 ----------------PKAEAQEYMNIYFERYP--------------------------- 824

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            ++ + L     +  E G  +                             L  R      
Sbjct: 825 -KIKSYLENIVSEAEEKGYVLTI---------------------------LNRRRFIPEI 856

Query: 578 SYLNTTTRQL-TREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
           +  N   + L  R            +Q  + DI+   M+N       +K    ++L VHD
Sbjct: 857 NASNKIVKALGERLAMNAP------IQGSAADIIKIAMINVYNKLKESKMQSKLILQVHD 910

Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661
           E++    + +      +    M +    + GL
Sbjct: 911 ELILNVKENEFEEVKKIVVDEMENAIKLSVGL 942


>gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
 gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
          Length = 857

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 96/555 (17%), Positives = 180/555 (32%), Gaps = 81/555 (14%)

Query: 23  KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
            Y E+  +   AF      V L          + +        +++  HNS      L A
Sbjct: 330 AYGEEGEITQCAF-LKSDTVHLV--TEGAE--KAVMGLCSLEGMSLCVHNSK----PLFA 380

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             +      R     +LA     P+A          S   ++  +E          +E  
Sbjct: 381 WLDRMGGEARVSYDAMLAAYLLNPNA----------SDYSLKRLQEEAGTAAPKLENETA 430

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
           +        + W+       G         ++L  L   E  L  +   + + G+ VD  
Sbjct: 431 WQAAVLPRVKNWQAASLLANG--------QRKL--LEEMEIPLAQVLARMENIGFLVDGE 480

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC--- 259
                 + ++ E   L +++     G   +    ++L   LF++ GL     T+T     
Sbjct: 481 SIRVYGERLETEIEALQKQIYE-EVGYEFNINSPKQLGDALFVKLGLPSGKKTKTGYSTN 539

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             +L   +   P    V + R      +      +++ +  DGR+               
Sbjct: 540 AEILEKLRYDHPAVELVLHYRTLTKLKSTY-CEGMLKVIGPDGRI--------------- 583

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGK 374
                           H   +Q  T      +++P+   I     +   +R   +A EG 
Sbjct: 584 ----------------HSNFNQTETRTGRISSTEPNLQNIPVRTELGRELRKFFLAKEGW 627

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            LV AD + IE RVLA +A ++  +KAF+  ED++  T ++ F + P  VT   R+  K 
Sbjct: 628 VLVDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQVFGMPPEMVTPLMRSRAKA 687

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y  GA +         ++       +       ++    +      +   E A 
Sbjct: 688 VNFGIVYGIGAFSLS---KDINVSRKEAQRYID------DYLTLYSGVDRYMKEVVEKAK 738

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
           ED ++ T   R ++   +  +    L     +        G A    K   V +    K 
Sbjct: 739 EDGYVETLFHR-RRYLPELTASNFNLRAFGERVARNMPIQGTAADIIKIAMVRVDRRLKR 797

Query: 555 KNN-LILMLPSGRSL 568
           +N    L+L     L
Sbjct: 798 ENMRARLILQVHDEL 812



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 577 RSYLNTTTRQLTREYTYGGKLTENI-VQAVSRDILAEGMMNATKAG------YDIVLTVH 629
           R YL   T        +G ++  N+ +Q  + DI+   M+   +          ++L VH
Sbjct: 750 RRYLPELTASNFNLRAFGERVARNMPIQGTAADIIKIAMVRVDRRLKRENMRARLILQVH 809

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           DE++ E P+ +   A+ +L   M    S    +P+ AE 
Sbjct: 810 DELIVEAPEDEAEQAARILTEEMEGAVS--LTVPMVAEA 846


>gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
          Length = 925

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 91/536 (16%), Positives = 173/536 (32%), Gaps = 134/536 (25%)

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAH 205
             W    ++ +  + +  E+ K+L+         + E  L  +   +   G  V+     
Sbjct: 489 PEWAKLADHAEAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMT 548

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
            L      +  K  +E  +L      +    ++L+  LF +  L     T+T       +
Sbjct: 549 ALRDSTAEKLAKEVEEARALVDMPKLNLGSPKQLQEVLFDKLELSKTKKTKTGYSTAAKA 608

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTL---VEAMNSDGRLRGTLQFLGASRTGRWSGC 322
            ++L  +    F + + A R    +++TL   ++A+ SDGR+  T               
Sbjct: 609 IERLAEKHPHPFLDHLLAHREYQKRVSTLDGLIKAIASDGRIHTT--------------- 653

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-L 376
                            +Q  T      ++DP+   I         +R+  +  EG + L
Sbjct: 654 ----------------FNQTATATGRLSSTDPNLQNIPVRTEEGRQIRAAFVPGEGYEAL 697

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RV+A  + ++  ++A+ +GEDL+    ++ F+V   +VT + R   K + 
Sbjct: 698 LTADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHNFVGSQVFDVPVNEVTPELRRRVKALS 757

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y           S  GL+                                      
Sbjct: 758 YGLVYGL---------SEYGLSQQ------------------------------------ 772

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
             +  +    KK   +   R   +   L++  ++  ++        RR            
Sbjct: 773 --LDISVREAKKIMVKYFERFGGVRRYLNEVVDRARKDEYTSTMLGRRRY---------- 820

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                                S L +  RQ  RE      L   I Q  + DI+   M+ 
Sbjct: 821 --------------------LSDLASLNRQ-ARENAERAALNAPI-QGTAADIIKVAMIR 858

Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
                   K    ++L VHDE+  E  + +      +    M      A  +PL+ 
Sbjct: 859 VDAALKKEKLASRVLLQVHDELDVEVANGELEQVRGIIQREMDEAIELA--VPLEV 912


>gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 857

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 99/660 (15%), Positives = 187/660 (28%), Gaps = 168/660 (25%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             +   A   D   V L      P +P  L+   +   +         +   L       
Sbjct: 334 PQIRDMAVAVDGQVVHL----SAPHIPAYLERLPQAAQIITA------DGKRLYKVLRTG 383

Query: 88  IPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
                +   +VL      P     AL  +    ++                  E      
Sbjct: 384 KRPAPFPADVVLGAYLLDPTRTSYALSYLATRFEVPL---------------PEGAAPSV 428

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                   + W    E          ++++R+      E  L Y    +   G+ VD A 
Sbjct: 429 CAEALFAAQVWE--KEEAALQQFGLTDLYERI------EAPLLYTLSVMETNGFTVDTAR 480

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---Q 260
              +   +  +   L+ E+     G   +    ++L   LF    L +   T+T      
Sbjct: 481 LQAMKTALTAQAAALENEIYE-AAGAAFNINSPKQLGHMLFEVLHLPVRKKTKTGYSTDA 539

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL S +   P   ++                                 F    +     
Sbjct: 540 EVLESLRDAHPAVEKIVR-------------------------------FRALKKLISTY 568

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375
                P  +P   R +    Q +T      +SDP+   I         +RS  +  +G  
Sbjct: 569 LDGLEPLIVPATGRVYTSFHQTVTATGRLSSSDPNLQNIPIRTEQGKKIRSLFVPGKGYD 628

Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            ++  D + IE R+LA ++ +   +  F+  +D++  T +  F++   QVT ++R+  K 
Sbjct: 629 YILSGDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWEQVTPEERSHAKA 688

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y         +A   G++                                    
Sbjct: 689 VNFGIIYGISDF---GLARNIGISRAQA-------------------------------- 713

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKK 553
                       K+      +R S +   + +   Q  E G    +  + R +  +  K 
Sbjct: 714 ------------KQYIESYFARYSTIHGYMEELVRQAKETGITRTMFGRMRTLTDINSKN 761

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                       RSL        R  +NT                   +Q  + DI+   
Sbjct: 762 FTR---------RSLA------ERMAMNTP------------------IQGSAADIIKLA 788

Query: 614 MMNATKAGY------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           M    +          +++ VHDE+V E P  + E   ++L   M    +    +PL A+
Sbjct: 789 MNAVQRELEQRQLRSRLLVQVHDELVLEVPADELELVKTLLKRTMEEAVT--LSVPLIAD 846


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 96/533 (18%), Positives = 167/533 (31%), Gaps = 130/533 (24%)

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           HRE   +        V    +    L  +   E  L  +   +   G  +D+A      +
Sbjct: 415 HRENRAVAALKIGQMVEKRLDAAGLLGLMQELEMPLVPVLCRMESAGIGIDLAAFDNFLR 474

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
            V      L   + SL  G   + R  ++    LF E GL     T      T   VL S
Sbjct: 475 QVKKSLDDLTASIYSLA-GKEFNIRSTQQTAQVLFDELGLKARRKTPKGAYSTSNVVLES 533

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            ++       +   R      +   L  L   ++  G                       
Sbjct: 534 MRRDHDIVDLILQYRTLEKLRSTY-LEPLPRKVDVGG----------------------- 569

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
                   R H   +Q+ T      +S+P+   I         +R+C   S+GK LV AD
Sbjct: 570 --------RLHTTFNQLATATGRLSSSNPNLQNIPIKGEFGPRMRACFKPSKGKLLVAAD 621

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA M+ +   L+AF   ED++  T    F+    +V++D+R   K +   L 
Sbjct: 622 YSQIELRILAHMSMDPNLLQAFGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTINFGLL 681

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y  G    QK++    +++                                         
Sbjct: 682 YGMGP---QKLSRELSISMEEAKE------------------------------------ 702

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                    +  K  RV + + ++ +  ++  +     +A +RR +P +  +        
Sbjct: 703 -----FISVYFSKLDRVRDFYQQIEEKAQE--QGYVTTMAGRRRLLPDINSR-------- 747

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619
                               NT   Q  R           ++Q  + D++ + M+     
Sbjct: 748 --------------------NTNMAQQARR-----TAVNTVIQGSAADVIKKAMLAVDSD 782

Query: 620 -----AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                 G  +VL VHDE++ E      +     L  +M    S    +PL  E
Sbjct: 783 SELRSLGSVMVLQVHDELLLEVDAPVAQKAGERLARVMAGVES--LEVPLLVE 833


>gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 879

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 92/561 (16%), Positives = 169/561 (30%), Gaps = 66/561 (11%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
            + GI  Y E+   +  A   +   V L+ C     + Q       +     + + +  E
Sbjct: 319 KEAGISIYKENDA-MWVALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 377

Query: 77  RTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
                +   +           + A   N L S  +    A    S  +   KELI +   
Sbjct: 378 VKEHLSHLTIHETTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSRKELIDKKHP 437

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLD 189
             T   L D  K          G          + +  +L  L         E    +  
Sbjct: 438 MVTDGVLSDAGKKIM-------GYEAYISREAIQPLSDKLTELEMMDLYREIEIPTMFAL 490

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  RG  VD          +     +L + +     G   +    ++L   LF    L
Sbjct: 491 HDMEVRGIHVDSKALKEYGDQLVGRIEELQESIYKEA-GEEFNINSPKQLGVVLFEHMKL 549

Query: 250 HLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+T       VL   + L P    V   R      +    + L   +  D R+  
Sbjct: 550 EGAKKTKTGYSTSVEVLEKIEHLYPIISMVLEYRQLTKLKSTYA-DGLANFIQDDQRI-- 606

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361
                                        H + +Q IT      +++P+   I     + 
Sbjct: 607 -----------------------------HGKFNQTITATGRISSTEPNLQNIPIRMELG 637

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +  +G   + AD + IE RVLA ++ ++  + A+E  +D++  T +  F +  
Sbjct: 638 RAIRKVFLPEDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPM 697

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT  QR   K +   + Y   A    +      ++       +        +   + F
Sbjct: 698 DEVTSTQRRDAKAVNFGIIYGLSAFGLSQ---DLKISRKQAQEYID--RYFAMYPRVKEF 752

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                +   E    D ++ T   R++     K S   +  N   +    +   G A    
Sbjct: 753 L----DGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQ-RNFGERVAMNSPIQGTAADII 807

Query: 542 KRRDVPLVYMKKDKNNLILML 562
           K   V +    K+K     +L
Sbjct: 808 KIAMVRVNMKLKEKQMKSRLL 828


>gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 887

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 90/511 (17%), Positives = 172/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+  +L+ ++ S   G   +    ++L  
Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQA-GEKFNLNSPKQLGH 547

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKMQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H    Q +T      + DP+   
Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+Q   +AF+TG D++  T
Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P QVT   R   K +   + Y         ++   G++       +     
Sbjct: 696 AMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E +P                            ++ + + +A ++ 
Sbjct: 750 -------------YFEQYP----------------------------QIKDYMDKAVQEA 768

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            + G A  I  +RR +P ++ KK          + R+         R+ +N+        
Sbjct: 769 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 806

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K          +V+ VHDE++ + P  +    
Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 855

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
 gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
          Length = 886

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 110/647 (17%), Positives = 208/647 (32%), Gaps = 160/647 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           LK+ LEN  +     +       L     LD+ +      ++LA        ++      
Sbjct: 367 LKDILENRKIQKDVFDLKRMTVGLHR---LDVIVEGLNYDMLLASYLVNNEKNSNDLGEI 423

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A       ++   E+  +  K                E    F         + +   + 
Sbjct: 424 AHLYDEYSIKTDLEVYGKGKKQAI------------PEDKEFFKHLAAKVCVIEKLKPEL 471

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           L+ L   EQ+  +         +   +   G  V+ +    L     V+  +L+ ++   
Sbjct: 472 LKQLKEHEQDDLFETIEIPTARVLAKMEINGIKVEASTLIELQNEFAVKLKELEDKIYKQ 531

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L   LF +  L +   T+T       VL   K  +P   ++ + R  
Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLNLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQI 590

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +                ++G L                    + R  R H    Q 
Sbjct: 591 AKIQSTY--------------VKGLLD------------------VIQRDGRVHTRYLQT 618

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQ 396
           +T      + DP+   I         +R   + SE    +   D + +E RVLA ++G+Q
Sbjct: 619 LTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQ 678

Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +AF+TG D++  T  R F++  P +VT   R   K +   + Y         ++   
Sbjct: 679 NMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNL 735

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                   A+ F     E +P                         
Sbjct: 736 GISRK----------------RAKEFIDNYFEQYP------------------------- 754

Query: 516 RVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              ++ + + +A ++  E G A  I  +RR +P ++ KK          + RS       
Sbjct: 755 ---QIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKF---------TVRSFA----- 797

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628
             R+ +N+                   +Q  + DI+   M+N  K          +V+ V
Sbjct: 798 -ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVIQV 838

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
           HDE++ + P  +      +   +M S       +PL A+ G+    Y
Sbjct: 839 HDELIFDVPKDELETIKKIVPEIMQSAVK--LDVPLIADSGWGHNWY 883


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 102/661 (15%), Positives = 205/661 (31%), Gaps = 160/661 (24%)

Query: 8   FETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMPQVLKEALEN 63
            E+ S I  D    G+   A +  ++ F+F   ++          +  V  Q+  +A + 
Sbjct: 313 LESESIIAFDTETTGLN--AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQAAKR 370

Query: 64  T-----DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
                    I+ HN  ++  +++  F L  P  ++  T++LA        +     AL+L
Sbjct: 371 ALGQIYSHFIIGHNLKYDFAIIENNFKL-TPPKKYADTMILAWLYNPSLRVNMDDLALRL 429

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KR 174
              K    + ++              + +            Y   D  +T   +    K 
Sbjct: 430 FDYKTLHFESVVK-------------KGENFASVELEKACNYAAEDAYITLRFYLYFLKN 476

Query: 175 LEPLS-----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           LEP         E     + + +   G  ++      L Q  + E   L +E+ +L    
Sbjct: 477 LEPNLLKLGFESEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYTLCDD- 535

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   LF +  L     T+T     ++VL S     P   ++   R   ++ 
Sbjct: 536 KFNLNSPKQVGDVLFEKLKLPSAKKTKTGYSTDEKVLESLIDKHPVVSKILAYR-ELAKL 594

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                  L++    D                               SR +    Q  T  
Sbjct: 595 YSTYCEPLLKLALKD-----------------------------ENSRIYSSFLQTGTAT 625

Query: 347 PTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I +        +SC IA +G   +  D + IE R+LA  + ++  L+A
Sbjct: 626 GRLSSKEPNLQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEA 685

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+  ED++  T    F     +   + R++ K +   L                G+   T
Sbjct: 686 FKNDEDIHARTAIMIFG----ENNYETRSVAKSINFGLI--------------YGMGYKT 727

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            +  +K  ++                                   K    +  +  + + 
Sbjct: 728 LSQNLKIEASL---------------------------------AKTYIEKYFANFTSIK 754

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           +   +       NG                        +   SGR          + Y +
Sbjct: 755 SFFEKVKNDAKING-----------------------FISTLSGR----------KRYFD 781

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCETPD 638
               +  +   Y  +   +I+Q  + DI+   M+   K   A   ++L +HDE++ E  D
Sbjct: 782 FANAKPMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEVKD 841

Query: 639 T 639
            
Sbjct: 842 E 842


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 150/485 (30%), Gaps = 127/485 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             EQ L ++  ++   G+ VD      + +   +E  K+ +E+  L+     +    ++L
Sbjct: 481 EVEQPLTFVLASMECEGFKVDKDKLTEMEEKFKIEIDKVQKEIYFLS-EEEFNINSPKQL 539

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL       P   ++   R    +     +  L  
Sbjct: 540 GKILFEKLDLPVIKKTKTGYSTNADVLERLHGKHPVIEKIIYYRQLT-KLYSTYIEGLKG 598

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  DG++                                   +Q +T      +++P+ 
Sbjct: 599 VIEEDGKIHS-------------------------------NFNQTVTTTGRLSSTEPNL 627

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I       ++ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 628 QNIPIKYEMGKEIRKIFIPDNRDCVILSADYSQIELRVLAHISGDENLINAFINHNDIHT 687

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  FNV   +VT  QR+  K +   + Y  G  +    A    +        +    
Sbjct: 688 KTASEVFNVPLGEVTSTQRSNAKAVNFGIVYGIGDFSL---ARNLNIPRKEAKSYIDA-- 742

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               + +     +    +  + A ++ ++ T                             
Sbjct: 743 ----YFEKYPKVKLYMNDIVKQAEKNFYVTTILN-------------------------- 772

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                      +RR +P +   K  N +I  L              R  +NT        
Sbjct: 773 -----------RRRFIPEI---KSSNKIIKAL------------GERFAMNTP------- 799

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N             I+L VHDE+V      +  + 
Sbjct: 800 -----------IQGSAADIIKIAMVNVFNRLKDNNFKSKIILQVHDELVLNVYKDELKDV 848

Query: 645 SMLYH 649
             +  
Sbjct: 849 KDIVK 853


>gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
 gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
          Length = 931

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 104/648 (16%), Positives = 195/648 (30%), Gaps = 161/648 (24%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
            D +        +K  LE++ +     N+      LK    L I +      L+L     
Sbjct: 402 IDLLTQNSP---VKRILEDSTILKNVFNAKELYVSLKR---LGIALKGVSFDLLLVSYLL 455

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             +       AL   +            +      E      K     A   F E+    
Sbjct: 456 DTNDNNNDLGALAHDND----------YYAVMTDEEVYGKGAKFAIPAADADFFEHLGR- 504

Query: 165 VTVTREIFKRLEPLSSK-------------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                 I    EPL  +             E  L  +   +   G  VD      +   +
Sbjct: 505 --KAMAINLLREPLLDRLLSHEQTKLYEDIELPLTKILADMESTGITVDSEQLLQMRSKL 562

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--L 269
               ++L+Q++     G   + +  ++L   LF E        T+T     +   +K   
Sbjct: 563 TERLSELEQKIYQQA-GHEFNIQSPKQLGVVLFEEMKYTPIKKTKTGYSTSVEVLEKMGD 621

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    +   R  A   +       +  +     + G+                      
Sbjct: 622 VPIVESILAYRQVAKIQST--YVEGLLRV-----IHGS---------------------- 652

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAG 383
              S+ H    Q +T      + DP+   I         +R   + S    +++ AD + 
Sbjct: 653 --DSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRIEEGRQIRKAFVPSHSDWQILSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQ 442
           IE RVLA + G++    AF  GED++  T  R F +   + V  + R   K +   + Y 
Sbjct: 711 IELRVLAHITGDKNLQAAFINGEDIHAATARRIFGIKDDEPVEGNVRRQAKAVNFGIVYG 770

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                   ++   G++      +++T    +++ D + +   +  +    A E  ++ T 
Sbjct: 771 ISDF---GLSKNIGVSRKEAKAIIET--YFDQYPDVKKWSDDIIAS----ARETGYVET- 820

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                               IA +RR +P +  K+         
Sbjct: 821 ------------------------------------IAHRRRYLPDIKAKRFNA------ 838

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
              RS         R+ +N+                   +Q  + DI+   M+    A  
Sbjct: 839 ---RSFA------ERTAMNSP------------------IQGSAADIIKIAMIKVQAAIE 871

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
                  ++L VHDE++ E P ++  +   L   +M S       +PL
Sbjct: 872 QAGMQAHMLLQVHDELIFEAPASEMADLEKLVTKVMDSAVK--LDVPL 917


>gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
 gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
          Length = 911

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 111/643 (17%), Positives = 208/643 (32%), Gaps = 152/643 (23%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSA 108
            ++   +   L   D+     N+  E  VL     L I      ++    L  +    + 
Sbjct: 385 ELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 443

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-------RNKPNHREAWRLFGEYC 161
           L  +     +  +   E      +F   E +E L+             H  + +   ++ 
Sbjct: 444 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDH- 502

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                + R+I          E  L  +  ++   G  +D A    L Q  D    +L+++
Sbjct: 503 -QQAELYRQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQ 551

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFN 278
           +     G   +    ++L   LF+   +     T+T       VL    +  P    +  
Sbjct: 552 IYEEA-GQEFNINSPKQLADLLFVHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQ 610

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A +     +  L+E +                               P  S+ H  
Sbjct: 611 YRQLA-KLNSTYVKGLLEVV------------------------------NPDDSKIHTR 639

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392
             Q +T      + DP+   I         +R   + S EG ++  +D + IE RVLA +
Sbjct: 640 YLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHV 699

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKM 451
            G++   KAFE+GED++  T    F ++  Q +T DQR   K +   + Y         +
Sbjct: 700 TGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDF---GL 756

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   G++      +++T      + +      W+ ++    A +  ++ T          
Sbjct: 757 AQRLGISRIEGKEIIQT-----YFHEFPKVKNWI-DSIIALAHKQGYVET---------- 800

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                      IA++RR +P ++ K           + RS    
Sbjct: 801 ---------------------------IAQRRRYLPDIHSKNF---------NLRSFA-- 822

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625
                R+  NT                   +Q  + DI+   M+   +A         ++
Sbjct: 823 ----ERTATNTP------------------IQGSAADIIKIAMIKMQQALDDNHLKAKML 860

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           L VHDE++ E P  +      L   +M S       +PL+ E 
Sbjct: 861 LQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEA 901


>gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 627

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 146/399 (36%), Gaps = 45/399 (11%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L  +   +  +G  +D+      +  +D E  ++++ +     G   +    +
Sbjct: 225 LMENEMPLIQVLSLMERKGIEIDIQYFKNYSLELDKELLRIEKAIYEEA-GEEFNINSPK 283

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF++  L     T+T     +   + L      +                     
Sbjct: 284 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 322

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                  R  L +   ++         P       SR H   +QI T      +SDP+  
Sbjct: 323 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 375

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I         +R   +A  GK L+  D + +E RVL  M+ ++  ++A+   +DL+  T
Sbjct: 376 NIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLT 435

Query: 413 YARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             R FN+     V+++QR I K++  ++ Y         +A    + +   +  +K    
Sbjct: 436 ARRIFNLSDTETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 490

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E++    +F R + E   EH       G      K+      S+   + ++  +    T
Sbjct: 491 FEQYPKVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 545

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +  G A    K+  V +  + KDK ++ L+L     L++
Sbjct: 546 VIQGTAAEVLKKVMVKVYDVLKDKEDITLLLQVHDELIF 584


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 103/669 (15%), Positives = 211/669 (31%), Gaps = 165/669 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQVLKEALENT-----DVT 67
           D    G+    ++  ++ F+F   +         HD   V  Q+  +A +         T
Sbjct: 322 DTETTGLD--TKEAKIVGFSFCSHESEAFYVPLAHDYLGVCKQISMQAAKKGIEKIYQST 379

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           ++ HN  ++  ++K  FNL +P   +  T++LA        +     A ++   +    +
Sbjct: 380 VIGHNLKYDFEIIKNNFNL-LPPKNYADTMILAWLKEPSLRVNMDVLAKRIFDYETLHFE 438

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---------KRLEPL 178
           +L+    KGE+   +                +Y   D  +T   +           LE  
Sbjct: 439 DLVK---KGESFAGV----------DVEKACKYAAEDAYITLRFYLYFLKNLEKSLLELA 485

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E E   +   + + G  +D+    +L Q  + +   L +++  L  G   +    ++
Sbjct: 486 QKSEFEFIKVLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYDLA-GEKFNINSPKQ 544

Query: 239 LKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           +   LF +  L     ++T     ++VL++         ++   R   ++        L+
Sbjct: 545 VGDILFEKLKLPSGKKSKTGYSTDEKVLNNLIDEHLIIKEILAYR-ELAKLVGTYCEPLL 603

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           +    D                               SR +    Q  T      + DP+
Sbjct: 604 KLAKKD-----------------------------ENSRIYSSFLQTGTATGRLSSKDPN 634

Query: 356 PLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I +        ++C +A EG   +  D + IE R+LA  + ++  L+AF   ED++ 
Sbjct: 635 LQNIPAHGQYAKDYKTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDEDIHA 694

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F     +     R+I K +   L Y  G   ++ ++    +             
Sbjct: 695 KTAIMIFG----ESNYHTRSIAKSINFGLIYGMG---YKTLSQNLKIEAKLA-------- 739

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                               K+   +     + +     +   +
Sbjct: 740 ------------------------------------KEYIEKYFKNFTSIKTYFEKVKNE 763

Query: 531 TIENG--KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
             +NG  K ++ RKR                                   Y +    +  
Sbjct: 764 AKQNGFIKTLLGRKR-----------------------------------YFDFENAKPM 788

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCETPDT--DEFN 643
           +   Y  +   + +Q  + DI+   M+   K       ++L +HDE++ E  D   DEF 
Sbjct: 789 QIAMYERESINSTLQGSAADIIKLAMIKIAKDLDENKRLILQIHDELIFEVKDEFCDEF- 847

Query: 644 ASMLYHLMT 652
           A     +M 
Sbjct: 848 AKNASDIME 856


>gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R]
 gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 880

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 160/528 (30%), Gaps = 138/528 (26%)

Query: 164 DVTVTREIFKRLEPLSSKEQ--ELWY--------LDQTINDRGYCVDVALAHTLNQIVDV 213
           DV    E+ + L     + Q  EL++        +   +   G  VDVA      +    
Sbjct: 452 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 511

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           +  + ++    L      +    ++L+  LF   G+     T+T      +  + L  + 
Sbjct: 512 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 571

Query: 274 IQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
              F + + A R        L  L+  +  DGR+  T                       
Sbjct: 572 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTT----------------------- 608

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384
                    +Q +       ++DP+   I         +RS  +  EG   L+ AD + I
Sbjct: 609 --------FNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQI 660

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RV+A ++ +   ++A+  GEDL+    ++ FNV    VT + R   K M   L Y   
Sbjct: 661 EMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLS 720

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A    +  S                                                   
Sbjct: 721 AFGLSQQLSI-----------------------------------------------PAG 733

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             K+       R   +   L +  E+  + G       RR                 LP 
Sbjct: 734 EAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRY---------------LPE 778

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621
                            T+  ++ RE      L   I Q  + DI+   M+   ++    
Sbjct: 779 L----------------TSDNRVARENAERAALNAPI-QGTAADIIKVAMIRVDRSLKEA 821

Query: 622 ---YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
                ++L VHDE+V E    + E    +L   M +       +PL+ 
Sbjct: 822 AVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEV 867


>gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 694

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 111/635 (17%), Positives = 178/635 (28%), Gaps = 157/635 (24%)

Query: 54  PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           P  L EA        L + +   V HN+      ++     D  +        LA     
Sbjct: 165 PSELDEADERAWVAWLADAERPKVLHNAK---GAMRVFAEHDWSVAGVSMDTALAAYLVK 221

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGD 164
           P       +AL L        + L          +        +  EA  L        D
Sbjct: 222 PGRRSFDLDALSL--------EYLGRELAPPAAADGQLAFGADDGAEAEALMVQARAVLD 273

Query: 165 V-------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           +                L      E     L   +   G   D A    + Q+      +
Sbjct: 274 LGSAFEGRLAEVGAADLLR---DMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQ 330

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAI 274
             +E      G   +    ++L+  LF E GL     T+T        L+     T   +
Sbjct: 331 AVKEAHG-AAGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLATQTDNEL 389

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            V   R R      + +  L++ + +DGR+  T                           
Sbjct: 390 PVIMLRHREQAKLRVTVEGLIKTIAADGRIHTT--------------------------- 422

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARV 388
                +Q +       ++DP+   I         +R   +  EG + L+ AD + IE RV
Sbjct: 423 ----FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRV 478

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ +   ++AF +GEDL+ T  ++ F V P  V  + R   K M   L Y   A   
Sbjct: 479 MAHLSEDAGLIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGLAYGLSAFGL 538

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            +      +       L                                           
Sbjct: 539 SQ---QLNIEAGEARAL------------------------------------------- 552

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                  R   + + L +A ++    G       RR                 LP     
Sbjct: 553 -MDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRY---------------LP----- 591

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622
                      LN+  RQ  RE      L   I Q  + DI+   M+    A        
Sbjct: 592 ----------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKIAMLKVDGALRDAGLAS 639

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPS 656
            ++L VHDEIV E    +   A  +    M+    
Sbjct: 640 RMLLQVHDEIVLEVAPGERGVAEEIVRREMSDAVD 674


>gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032]
          Length = 880

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 160/528 (30%), Gaps = 138/528 (26%)

Query: 164 DVTVTREIFKRLEPLSSKEQ--ELWY--------LDQTINDRGYCVDVALAHTLNQIVDV 213
           DV    E+ + L     + Q  EL++        +   +   G  VDVA      +    
Sbjct: 452 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 511

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           +  + ++    L      +    ++L+  LF   G+     T+T      +  + L  + 
Sbjct: 512 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 571

Query: 274 IQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
              F + + A R        L  L+  +  DGR+  T                       
Sbjct: 572 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTT----------------------- 608

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384
                    +Q +       ++DP+   I         +RS  +  EG   L+ AD + I
Sbjct: 609 --------FNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQI 660

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RV+A ++ +   ++A+  GEDL+    ++ FNV    VT + R   K M   L Y   
Sbjct: 661 EMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLS 720

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A    +  S                                                   
Sbjct: 721 AFGLSQQLSI-----------------------------------------------PAG 733

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             K+       R   +   L +  E+  + G       RR                 LP 
Sbjct: 734 EAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRY---------------LPE 778

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621
                            T+  ++ RE      L   I Q  + DI+   M+   ++    
Sbjct: 779 L----------------TSDNRVARENAERAALNAPI-QGTAADIIKVAMIRVDRSLKEA 821

Query: 622 ---YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
                ++L VHDE+V E    + E    +L   M +       +PL+ 
Sbjct: 822 AVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEV 867


>gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
 gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G+ V+  +   L+     E  +  +E+  L      +    ++L
Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   K   P   ++   R   S+     +  L  
Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T                                +Q +T      +++P+ 
Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I   EG  L+ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT   R+  K +   + Y  G   F  ++    ++            
Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +A+ +     E +P                            ++   + +   +
Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589
               G  +    RR                 +P   +          R  +N        
Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+N             ++L VHDE++      + + 
Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
              +L   M +       +PL  +
Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855


>gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
          Length = 1030

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/530 (17%), Positives = 166/530 (31%), Gaps = 131/530 (24%)

Query: 159  EYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLN 208
            EY        R ++  L  L             E  L  +   +   G   D  L    +
Sbjct: 599  EYALE-AIAVRALYPVLRELLHTDGSDDLFYELELPLIPVLLHMERNGIYCDKHLLAEQS 657

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
            + +  E   +  EL  L      +     +L   LF   GL  + L +T           
Sbjct: 658  RALSHELNAMSLELRRLAQ-QDFNIDSPMQLSHVLFDVWGLPTKGLKKT----------- 705

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                       R     +    L +L  A   D R++  L +    +            +
Sbjct: 706  -----------RRGYYSTNAQTLASLSMA---DERVQLILDYRERMKIKNTYLDAL-VHD 750

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAG 383
            +    R H   +Q I       +SDP+   I     +   VR   +       +  D + 
Sbjct: 751  IRSDGRIHSTFNQTIAATGRLSSSDPNLQNIPTRSSLGHRVRKAFVLPRNHLFLACDYSQ 810

Query: 384  IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            IE R+LA ++ ++  + AF+TG D +  T AR F+V+P +VT   R+  K +   + Y  
Sbjct: 811  IELRLLAHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNFGIVYGQ 870

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             A     +A++  ++      ++        + +A    R   +   + A E  ++    
Sbjct: 871  QAF---GLATSLKISRKEAQEMID------RYFEAYPGVRKFLDESVQFAREHSYV---- 917

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                                               +  ++R +  +    D  N  L   
Sbjct: 918  ---------------------------------PTMYGRKRHIAQI----DSRNFQL--- 937

Query: 564  SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619
              RS         R+ +N                     Q  + DI+   M+   K    
Sbjct: 938  --RSFA------ERTAMNHPM------------------QGSAADIIKLAMIEVEKQFAQ 971

Query: 620  --AGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                  ++L +HDE+  E  P+  E  +S++   M    +    +PL AE
Sbjct: 972  LGLASKLILQIHDELDFEVVPEELERVSSVVKRAMEGVVT--LRVPLIAE 1019


>gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 200/664 (30%), Gaps = 159/664 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           FA           D       P  LKE LE++ V     +    RT     + L I    
Sbjct: 343 FALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAEG 397

Query: 93  WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               L+LA        ++              ++   E+  +            +N    
Sbjct: 398 LSFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDLEVYGKG-----------KNAKIP 446

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201
            +    F         +       L+ L   EQ+  Y         +   +   G  V  
Sbjct: 447 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 506

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260
           +    L     V   +L++++     G   +    ++L   LF + GL +   T+T    
Sbjct: 507 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 565

Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL+  K+ +P    +   R   S+     +  L++ ++                   
Sbjct: 566 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDE------------------ 606

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                       R  R H    Q +T      + DP+   I         +R   + S  
Sbjct: 607 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSP 654

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   +VT  QR  
Sbjct: 655 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 714

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y         ++    ++       +      +++   + +          
Sbjct: 715 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFID--EYFDQYPGIQAY---------- 759

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550
                                           +  A +   E G A  I  +RR +P ++
Sbjct: 760 --------------------------------MDWAVKDAREKGYAETIMHRRRYLPDIH 787

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
            K           + RS         R+ +N+                   +Q  + DI+
Sbjct: 788 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 814

Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
              M+N  K          +V+ VHDE++ + P  +      +   +M +       +PL
Sbjct: 815 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 872

Query: 664 KAEG 667
            A+ 
Sbjct: 873 VADA 876


>gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
 gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
          Length = 602

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 110/557 (19%), Positives = 195/557 (35%), Gaps = 78/557 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D    G+  Y++        FG  +    +       V  +    AL   D   V HN+ 
Sbjct: 41  DSETTGLDIYSKGFRCRTVQFGSPEEGW-VIPVERGAVFREAAIAALRAAD-RFVLHNAS 98

Query: 75  FERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLSS--------QKME 124
           ++  V   C  + +     + + T +LA     P   K  G    L             +
Sbjct: 99  YDLQVFDKCLGVPMEELWPKVVDTKILAHLVD-PRGRKEGGTGHSLEELTRHYLDADVAD 157

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--- 181
             K L+    K E         K +       +  Y   D  +   + ++L PL      
Sbjct: 158 TVKTLMTDLAKEEKTTKANVWKKVSLDNP--RYQLYAGMDPILACRLRQKLSPLVPVSAR 215

Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E++L  +   +   G+ +DV     L+  + ++ +   +    L+YG   +    
Sbjct: 216 GLVGYERDLAEVCSVMERTGFLLDVDYTRKLSTRLRLDESVASEIA--LSYGCE-NVNST 272

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLN 292
           +++   L  + G  +   T T  ++V  +      +    F     +  +A +     ++
Sbjct: 273 DQVADVL-EQMGAWIPGRTPTGKKQVNDTLLAQLAKDGNEFARSVIDAKKAGKWRKTWVD 331

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             ++ ++ DGR   ++  L A RT R S    P Q LP                      
Sbjct: 332 RFLQTVDPDGRCHASINPLQA-RTARMSITEIPAQTLPAGDWM----------------- 373

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      +R C +A EG+ +   D    E RVLA ++G+   ++AF  G+DL++ T
Sbjct: 374 -----------IRRCFLADEGELIASVDYQAQELRVLAALSGDPTMIRAFAEGQDLHLLT 422

Query: 413 YARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              +F      +TKD  +R   KV+     Y GGA   + ++  TGL       +V    
Sbjct: 423 ARAAFG---DHITKDDPERKYAKVVNFGRVYGGGA---KTVSEQTGLGFMAAKQVVDG-- 474

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               ++ A    R +     E A++   I T   RV         R     N L Q+  +
Sbjct: 475 ----FDKAYPGVRVLSHKLQEEAVKSGQIVTPTGRVLPV---DQDRAYAALNYLIQSTSR 527

Query: 531 TIENGKAIIARKRRDVP 547
            +  GKA+I   R    
Sbjct: 528 DV-TGKALIRLHRAGFG 543


>gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2]
 gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2]
          Length = 942

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/499 (17%), Positives = 160/499 (32%), Gaps = 119/499 (23%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VD      L++ ++ +  +L   + +L      +     +L
Sbjct: 540 DIETPLVPVLVAMERTGMLVDPGCLKDLSEGLESQIDELAVRIRALAGDSDFNISSPMQL 599

Query: 240 KTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
              LF   GL  + L +T      T  RVL    +       +   R +    +     T
Sbjct: 600 SHILFDVMGLPTKGLKKTHRGYYSTNARVLDELAQDNELVRLILEYREKTKIKS-----T 654

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
            ++ +    R                           +  R H   +Q IT      +S+
Sbjct: 655 YLDTLGPLRR---------------------------QDGRVHTTYNQTITATGRLSSSN 687

Query: 354 PDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           P+   I     +   V++   A EG   +  D + IE R+LA ++G++  ++AF  GED 
Sbjct: 688 PNLQNIPTRSELGHTVKTAFSAGEGALFLAVDYSQIELRLLAHLSGDEHLIRAFREGEDF 747

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T AR F V   +VT   R+  K +   + Y   A    +   T  + ++    ++  
Sbjct: 748 HAETAARVFGVPVDEVTPRLRSRAKAVNFGIVYGQQAFGLSQ---TLDIPVSEAQEMID- 803

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 + +A    R   +     A E  +  T   R                       
Sbjct: 804 -----RYFEAYPGVRAFLDRTVAEAAERGYAETMFGR----------------------- 835

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                         RR +P + MK                        R+ +N   +   
Sbjct: 836 --------------RRPIPELRMKNATQRSF---------------GERTAMNHPMQ--- 863

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SML 647
                 G   + I  A+ R  +AE +         ++L VHDE+  E P  +  +  +M+
Sbjct: 864 ------GSAADIIKIAMRR--VAERLHG-GDLHAKMILQVHDELDFECPIAEVADVSAMV 914

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M         +PL A+
Sbjct: 915 REEMEGVVK--LKVPLIAD 931


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 635

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 104/659 (15%), Positives = 208/659 (31%), Gaps = 154/659 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            AF FD           D    + L++  E  D   V+H    +  V  +   ++    +
Sbjct: 95  IAFSFDGTT-----LYSDVERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECK-SK 147

Query: 93  WICTLVLARSN-------GLPSALKAVGEALKLSSQKM-EEGKELIARFCKGETHECLYD 144
           ++ T ++A           L   LK   +   LS +++  +GK+        E     Y 
Sbjct: 148 YLDTAIMAYLLNPSESNYDLERVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYI 207

Query: 145 RNKPNH----REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
             + +H    ++    F E          ++ K L      E  L  + +++   G+ +D
Sbjct: 208 CGRCSHLFELKDKLMAFIE--------EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLD 256

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
             +   L++ +D   +++  ++     G   +    ++L  +LF +  L +   T+T   
Sbjct: 257 RNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKTKTGYS 315

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
                 ++LT     V                               +++   ++     
Sbjct: 316 TDSEVLEQLTAYNDIVSE----------------------------IIEYRQLTKLKSTY 347

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGK 374
              F P       R H    Q++       +++P+   I         +R   I   +  
Sbjct: 348 IEGFLPLMD-ENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDG 406

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +V AD + IE RVLA ++ ++  ++AF   ED+++ T +  F V P  VT + R   KV
Sbjct: 407 YIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKV 466

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y         +A    ++       +        + +     +   E     A 
Sbjct: 467 VNFGIIYGISDY---GLAKDLKISRKEAKEYIDN------YFEKYKGVKEYIEKVIRFAK 517

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
           E+ ++                                       I  +RR +P +  +  
Sbjct: 518 ENGYV-------------------------------------TTIMNRRRYIPEINSRNF 540

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                           +     R  +NT                   +Q  + DI+   M
Sbjct: 541 T---------------QRSQAERLAMNTP------------------IQGSAADIIKMAM 567

Query: 615 MNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           +              ++L VHDE+V +T  D  E    +L   M +       +PL  E
Sbjct: 568 VKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKESMENVIK--LKVPLVVE 624


>gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
 gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
          Length = 866

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G+ V+  +   L+     E  +  +E+  L      +    ++L
Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   K   P   ++   R   S+     +  L  
Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T                                +Q +T      +++P+ 
Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I   EG  L+ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT   R+  K +   + Y  G   F  ++    ++            
Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +A+ +     E +P                            ++   + +   +
Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589
               G  +    RR                 +P   +          R  +N        
Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+N             ++L VHDE++      + + 
Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
              +L   M +       +PL  +
Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855


>gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101]
 gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101]
          Length = 866

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G+ V+  +   L+     E  +  +E+  L      +    ++L
Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   K   P   ++   R   S+     +  L  
Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T                                +Q +T      +++P+ 
Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613

Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I   EG  L+ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 614 QNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT   R+  K +   + Y  G   F  ++    ++            
Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +A+ +     E +P                            ++   + +   +
Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589
               G  +    RR                 +P   +          R  +N        
Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+N             ++L VHDE++      + + 
Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
              +L   M +       +PL  +
Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855


>gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
 gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
          Length = 811

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 151/475 (31%), Gaps = 108/475 (22%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L +   ++   G  V      +  + + V   +L++ +     G   +    ++L
Sbjct: 413 EIELPLIFTLDSMEKWGIRVKGEELKSYGEKLQVRIAELEKLIYEQA-GEEFNINSPKQL 471

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF + G+     T+T         +KL P+   V +                     
Sbjct: 472 GVILFEKMGIPGGRKTKTGYSTAADILEKLAPEQPIVND--------------------- 510

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   L++   ++             +    R H   +Q IT      +++P+   I
Sbjct: 511 -------ILEYRQLTKLKSTYADGLSA-VIEADGRIHSTFNQTITATGRISSTEPNLQNI 562

Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                +   +R   +  +G   + AD + IE RVLA M+G++  ++A+   ED++  T +
Sbjct: 563 PVRMELGRLIRKVFVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAYREAEDIHRLTAS 622

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F+V   +VT  QR   K +   + Y   +    +      +     A  ++     E 
Sbjct: 623 QVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAEYIE--KYFET 677

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           +   + F     +       E  ++ T   R                             
Sbjct: 678 YPKIKGFL----DGLVADGKEKGYVSTMLGR----------------------------- 704

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                   RR +P              L SG  +  R  G  R  +N+  +         
Sbjct: 705 --------RRPIP-------------ELKSGNFMQ-RSFGE-RVAMNSPIQ--------- 732

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
           G   + I  A++R       +        +VL VHDE++ ET   +    S +  
Sbjct: 733 GTAADIIKIAMNR---VYQRLKEEGLQSRLVLQVHDELLIETKKEEVETVSRILE 784


>gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
          Length = 908

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/529 (17%), Positives = 191/529 (36%), Gaps = 73/529 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-------GLPSAL 109
           +KE   N+D   + +N        K   N  + I      L++A          G+   L
Sbjct: 395 IKEFFRNSDSKFITYN-------FKPLLNEGVEIKNMDVDLMIAYHLISSQTKEGVEIPL 447

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           + +   + ++    + GKE        E  + L +R+K         +G           
Sbjct: 448 EQLS-GIDIAPYSEKFGKEAPGNLSTEEYGKFLTERSK----GIMETYG-------IAME 495

Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           EI  +  LE L   E  L  +   +  +G  +D        + +++  + L +++  +  
Sbjct: 496 EIKGKDLLEVLEKTEMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLSDLQKKIFEIA- 554

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    ++L   LF +  L     T+T         +KL    +++ +         
Sbjct: 555 GEEFNLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDEEVLEKLKSDGVEIASY-------- 606

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                               L++   ++         P        R H   +QI T   
Sbjct: 607 -------------------ILEYRKYAKLKNTYVDALPKLVD-SKDRLHTTFNQIGTTTG 646

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   IA  G  L+  D + IE RVLA ++ ++  + A+
Sbjct: 647 RLSSSNPNLQNIPVKTDEGMKIRQGFIADSGNVLMGIDYSQIELRVLAELSKDENLIAAY 706

Query: 403 ETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           +  EDL+  T  + F +    +V+++QR I K +  ++ Y   A     ++   G+    
Sbjct: 707 KNNEDLHRVTAKKIFELGEGEEVSREQRIIAKTINFSIIYGKTAF---GLSKELGIPQKE 763

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +  N   E++   ++F R + +   ++   + + G    R+ +    K+  +    
Sbjct: 764 ATDYI--NRYFEQYPRVKDFERSIIDYAEKNGYTETYFGR--RRIIEGIISKNKNIK--- 816

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           N+  +    ++  G A    K+  + +  +   K ++ L+L     L++
Sbjct: 817 NQAERMAVNSVIQGTAAEILKKVMIEIFKVIDGKEDISLLLQVHDELIF 865


>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
          Length = 897

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/528 (16%), Positives = 156/528 (29%), Gaps = 141/528 (26%)

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           D  + R     L  L   E  L ++   +   G  VDV    +L            +   
Sbjct: 472 DTELERIDSSAL--LQEMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQRVRDAAESAY 529

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            +  G   +    ++L+  LF +  +     T+T       +   L  +    F   +  
Sbjct: 530 EVI-GEQVNLGSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFLKHLLE 588

Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            R A    + +  L + +  D R+  T                                +
Sbjct: 589 HRDATRLRVTVEGLQKTVADDQRIHTTF-------------------------------N 617

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-----------KKLVVADLAGI 384
           Q +       ++DP+   I         +R   + + G           + L+ AD + I
Sbjct: 618 QTVAATGRLSSTDPNLQNIPVRTEAGRQIRHAFVVAPGPVAVGSGNIEFESLMTADYSQI 677

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  ++AF TGEDL+    +R+F V   QV    R+  K M   L Y   
Sbjct: 678 EMRIMAHLSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYGLS 737

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A     +A+  G++                                              
Sbjct: 738 AY---GLAAQLGISREEA------------------------------------------ 752

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             K+       R   + + LH+  E+   N        RR                 LP 
Sbjct: 753 --KQQMEAYFDRFGGVRDYLHRVVEEARRNEYTATLFGRRRY---------------LPD 795

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
             S  ++                 R+      L   I Q  + DI+   M+N        
Sbjct: 796 LNSDNFQ----------------RRQSAERMALNAPI-QGTAADIIKVAMINVQKRLRTE 838

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
           +    ++L VHDE+V E    ++     L    M         +PL+ 
Sbjct: 839 QLSSRMLLQVHDELVIEVATGEQAAVEALVREEMGGAID--LSVPLEV 884


>gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
 gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G+ V+  +   L+     E  +  +E+  L      +    ++L
Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   K   P   ++   R   S+     +  L  
Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T                                +Q +T      +++P+ 
Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I   EG  L+ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT   R+  K +   + Y  G   F  ++    ++            
Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +A+ +     E +P                            ++   + +   +
Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589
               G  +    RR                 +P   +          R  +N        
Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+N             ++L VHDE++      + + 
Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
              +L   M +       +PL  +
Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855


>gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 650

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/511 (17%), Positives = 172/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+  +L+ ++     G   +    ++L  
Sbjct: 252 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQA-GEKFNLNSPKQLGH 310

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 311 ILFEKLGLPVIKKTKTGYSTAVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 369

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H    Q +T      + DP+   
Sbjct: 370 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 398

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+Q   +AF+TG D++  T
Sbjct: 399 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 458

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P +VT   R   K +   + Y         ++   G++       +     
Sbjct: 459 AMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 512

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                          E +P                            ++ + +++A ++ 
Sbjct: 513 -------------YFEQYP----------------------------QIEDYMNKAVQEA 531

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            + G A  I  +RR +P ++ KK          + R+         R+ +N+        
Sbjct: 532 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 569

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K          +V+ VHDE++ + P  +    
Sbjct: 570 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETI 618

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 619 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 647


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/648 (15%), Positives = 190/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D     H++      +
Sbjct: 357 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 413

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E ++         +
Sbjct: 414 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVED--------NS 465

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 466 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAG 525

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
              D+ +   L    D   T+ ++         + +    ++L+  LF +  +     T+
Sbjct: 526 IAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTK 584

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 585 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 638

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 639 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 673

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 674 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 733

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 734 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 761

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 762 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 805

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 806 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 834

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 835 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 882


>gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5]
 gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase
 gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5]
          Length = 595

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 118/566 (20%), Positives = 196/566 (34%), Gaps = 92/566 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69
           +D    G+  Y++     L  FG  D     PVEL D   + V  ++   AL+     +V
Sbjct: 40  VDTETTGLDIYSDTFECRLVQFGTQDEAWVVPVELGDVFIEDV--RIAIGALKR----MV 93

Query: 70  AHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLSS------- 120
             N+ F+  VL  CF +++     R + T +LA+    P   +A G    L         
Sbjct: 94  LQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVD-PRPFEAGGFGHSLEELIAKFIS 152

Query: 121 -QKMEEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + E  K+L+A+             +     H E    +  Y   D   T  + K L P
Sbjct: 153 EDQAENVKKLMAKLAAEHKTTKAKIWSTIDLFHPE----YLLYAGMDTIFTARVCKSLTP 208

Query: 178 LSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           L           E ++  +   I+ +G+ +DV  + +L +    ++     E  + T   
Sbjct: 209 LVPDVSRSLVPYEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQEVW--EAIAFTEYG 266

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-KKLTPQAIQVFNNRMRASRSAV 288
           V      E L   L  E G+ +   TET  ++V ++   KL     ++      A +   
Sbjct: 267 VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQVNAALLDKLVEDGNELAAIAQEAKKLGK 325

Query: 289 ---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +   ++  +S+ R    +  L A RT R S    P Q LP               
Sbjct: 326 WRKTWVQKFIDTRDSEDRCHTFINPLQA-RTSRMSITGIPAQTLPSSDWI---------- 374

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                             VR C IA  G  +   D    E RVLA ++G++  ++AFE G
Sbjct: 375 ------------------VRRCFIAEPGDVMASVDYQAQELRVLAALSGDRNMIEAFENG 416

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            DL+  T             +  R +GK       Y GGAKA    A   G+++      
Sbjct: 417 ADLHQMTA---------DAAQVPRKVGKTANFQKVYGGGAKAL---AEAVGISIPVAK-- 462

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                  E +         + +     A  + +I  A  R         SR     N + 
Sbjct: 463 ----RVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAMGR---RLPVDSSRTYSALNYMI 515

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYM 551
           Q+  + +     I   +    P + +
Sbjct: 516 QSSSRDVTCRALIRLHEAGYTPYLRL 541



 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +   +++    +A  + +     +  R        Y   ++ +  L + +GR+    +  
Sbjct: 437 ANFQKVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAM 496

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT--VHDEI 632
             R  +++         TY       ++Q+ SRD+    ++   +AGY   L   +HDEI
Sbjct: 497 GRRLPVDS-------SRTY--SALNYMIQSSSRDVTCRALIRLHEAGYTPYLRLPIHDEI 547

Query: 633 VCETPDTD-EFNASMLYHLMTS 653
           V   P ++ E  A+ + HLM  
Sbjct: 548 VASLPASEAERAAAHIGHLMQE 569


>gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
 gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
          Length = 911

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 111/643 (17%), Positives = 207/643 (32%), Gaps = 152/643 (23%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSA 108
            ++  ++   L   D+     N+  E  VL     L I      ++    L  +    + 
Sbjct: 385 ELLNSLVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 443

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-------RNKPNHREAWRLFGEYC 161
           L  +     +  +   E      +F   E +E L+             H  + +   ++ 
Sbjct: 444 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDH- 502

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                + R+I          E  L  +  ++   G  +D A    L Q  D    +L+++
Sbjct: 503 -QQAELYRQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQ 551

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFN 278
           +     G   +    ++L   LF    +     T+T       VL    +  P    +  
Sbjct: 552 IYEEA-GQEFNINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQ 610

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A +     +  L+E +                               P  S+ H  
Sbjct: 611 YRQLA-KLNSTYVKGLLEVV------------------------------NPDDSKIHTR 639

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392
             Q +T      + DP+   I         +R   + S EG ++  +D + IE RVLA +
Sbjct: 640 YLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHV 699

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKM 451
            G++   KAFE+GED++  T    F ++  Q +T DQR   K +   + Y         +
Sbjct: 700 TGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDF---GL 756

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   G +      +++T      + +      W+ ++    A +  ++ T          
Sbjct: 757 AQRLGTSRIEGKEIIQT-----YFHEFPKVKNWI-DSIIALAHKQGYVET---------- 800

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                      IA++RR +P ++ K           + RS    
Sbjct: 801 ---------------------------IAQRRRYLPDIHSKNF---------NLRSFA-- 822

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625
                R+  NT                   +Q  + DI+   M+   +A         ++
Sbjct: 823 ----ERTATNTP------------------IQGSAADIIKIAMIKMQQALDDNHLKAKML 860

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           L VHDE++ E P  +      L   +M S       +PL+ E 
Sbjct: 861 LQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEA 901


>gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
 gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G+ V+  +   L+     E  +  +E+  L      +    ++L
Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   K   P   ++   R   S+     +  L  
Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKA 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T                                +Q +T      +++P+ 
Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I   EG  L+ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT   R+  K +   + Y  G   F  ++    ++            
Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +A+ +     E +P                            ++   + +   +
Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589
               G  +    RR                 +P   +          R  +N        
Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+N             ++L VHDE++      + + 
Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
              +L   M +       +PL  +
Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/510 (15%), Positives = 164/510 (32%), Gaps = 131/510 (25%)

Query: 174 RLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +E L  K EQ L Y+  ++   G+ VD            +E  K+ +E+ SL+     +
Sbjct: 470 HMEELLYKVEQPLIYVLASMECEGFKVDKDKLVEQEGKFKIEIDKVQKEIYSLS-EEEFN 528

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+T       VL   K   P   ++   R    +    
Sbjct: 529 INSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIVEKIIYYRQLT-KLYST 587

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L   +  D ++  +                                +Q +T     
Sbjct: 588 YIEGLKAVIQEDDKIHSSF-------------------------------NQTVTTTGRL 616

Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +++P+   I         +R   +   E   ++ AD + IE RVLA +A ++  + AF 
Sbjct: 617 SSTEPNLQNIPIKYEMGKEIRKIFVPENEDCVILSADYSQIELRVLAHIADDENLISAFI 676

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T +  F V   +VT  QR+  K +   + Y  G  +    A    ++     
Sbjct: 677 NHSDIHTKTASEVFKVPIDEVTSAQRSNAKAVNFGIVYGIGDFSL---AKNLKISRKEAK 733

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             + T                                           +++ +V    ++
Sbjct: 734 LYIDTYF-----------------------------------------ERYPKVKLYMDD 752

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           + +  +  + +    +  +RR +P +                   + R  G  R  +NT 
Sbjct: 753 IVKEAK--VNSYVTTLMNRRRFIPEIKSSNK--------------IVRSFGE-RLAMNTP 795

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637
                             +Q  + DI+   M+N  +   +      ++L VHDE++    
Sbjct: 796 ------------------IQGSAADIIKIAMVNVYRRLEENKLKSKLILQVHDELILNVY 837

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666
             +  N   ++   M         +PL+ +
Sbjct: 838 KEEIDNVKSVVKEEMEKVLQ--LKVPLEVD 865


>gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 912

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/606 (16%), Positives = 180/606 (29%), Gaps = 154/606 (25%)

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            W+        + L SALKA+     L    + +   + A   + E            H 
Sbjct: 392 SWLKGSAPKAVHDLKSALKALS-GRGLDLDGVVDDTSISAYLIQPERRNYDLADLSLYHL 450

Query: 152 EAWRLFG------------------EYCKGDVTVTREIFKRLEP----------LSSKEQ 183
           E                        +        T+++     P          L+  E 
Sbjct: 451 ETPMTVSASKDAGQLDLGLEGDDGAQEAVLRAFATQKLSSFFAPILLERNAEQLLTGLEL 510

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  V      TL             E  ++  G   +    ++L+T L
Sbjct: 511 PLARVLSGMELAGVAVSKETLDTLMADFGKTIETAQTEAYAII-GHEVNLGSPKQLQTVL 569

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F E G+      +T       +   LT +    F  +++A R A     T+   + S G 
Sbjct: 570 FDELGMPKTKKIKTGFSTDAEALADLTTKHPHPFLLQLQAYRDATKLRQTVEGLIKSIG- 628

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
                                        +R H    Q +       +++P+   I    
Sbjct: 629 ---------------------------SDTRVHTTYAQNVAATGRLSSNNPNLQNIPIRS 661

Query: 361 --SDCVRSCVIASE-----GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                +R   +  +      + L+ AD + IE R++A ++G++  ++AF+ GEDL+    
Sbjct: 662 EEGRRIRGAFVVGQKSTKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVG 721

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  FNV P +VT   R+  K M   L Y   +     ++    ++++    L+K      
Sbjct: 722 SHIFNVEPQEVTSAMRSKVKAMSYGLVYGLSSF---GLSKQLNISVDEARTLMK------ 772

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                     R   + + L    EQ   
Sbjct: 773 --------------------------------------DYFDRFGAVRDYLRGVVEQARL 794

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           +G       RR                 LP                L +  RQL RE + 
Sbjct: 795 DGFTETIESRRRY---------------LPE---------------LTSDNRQL-REMSE 823

Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646
              L   I Q  + DI+   M+              ++L VHDE+V E  + + +   ++
Sbjct: 824 RAALNAPI-QGSAADIIKRAMLGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQAL 882

Query: 647 LYHLMT 652
           +   M 
Sbjct: 883 VIAQMA 888


>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 814

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 126/372 (33%), Gaps = 55/372 (14%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                       L   E  +  +   +   G  VD+ +   L      +     +    +
Sbjct: 472 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 531

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L+  LF E G+     T+T       + + L  +    F   + A R
Sbjct: 532 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 590

Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                 + ++ L++A+ +DGR+                               H   +Q 
Sbjct: 591 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 619

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396
           I       +++P+   I         +R   +  +G  +L+ AD + IE R++A ++G++
Sbjct: 620 IAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 679

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF TGEDL+    +R+F V   +VT + R   K M   L Y   A    +      
Sbjct: 680 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQ---QLK 736

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +    A           R       E A +D +  T   R     R+    
Sbjct: 737 ISTEEANEQMDAYFAR------FGGVRDYLRAVVERARKDGYTSTVLGR-----RRYLPE 785

Query: 517 VSELWNELHQAF 528
           +     ++ +A 
Sbjct: 786 LDSSNRQVREAA 797


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/630 (14%), Positives = 195/630 (30%), Gaps = 156/630 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALK 117
           L N+   ++  N  F+  VLK        +       ++A     P    +L  +     
Sbjct: 409 LFNSQPKLIGQNYKFDYKVLKRH---GFNVISAYFDTMIAAYVIDPNTKVSLDFLAA--- 462

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                    K L+    K   +E +  ++         +   Y   D  +T  +F  L  
Sbjct: 463 ---------KYLMH---KNIKYEEIVPQHSTLKDIPLEIASNYAAEDADITFRLFNILRK 510

Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                     + + E     +   + + G  +D          ++ E   ++ E+   + 
Sbjct: 511 KLKEDNLESLMKNIEMPFSNVIIEMEENGIYLDSNYLTQYGHELEQELKTIENEVIQ-SI 569

Query: 228 GLVSSSRCLEKLKTWLFLETG--LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           G+  +    ++L T LF +    +      ++T  +VL + K       ++ N R  A  
Sbjct: 570 GIEFNLNSSKQLHTILFEKLNIIVPKNVKQDSTDIKVLETIKDQHESIEKLINYRQLA-- 627

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                        +               + ++ H    Q  T 
Sbjct: 628 -----------------------------KLKNTYTDNLIEFINEKTNKIHTNFIQTKTA 658

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                ++ P+   I         +R+    ++G   + AD + IE  +LA ++ ++  ++
Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIE 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF   +D+++ T ++ F V  A +T   R I K +   +              +  L++ 
Sbjct: 719 AFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGII-----YRMSAFRLSQELSIK 773

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                          E+A+NF       + +      FI    + VK+            
Sbjct: 774 R--------------EEAQNFIDSYFNLYSKI---KTFIQNQIDFVKQN----------- 805

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             + ++RR +  +  +                     G  R  +
Sbjct: 806 -------------GYSETLLKRRRYIREINSQN---------------YLERTGAERMAI 837

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           N+                  I+Q  + DI+   M+              I+L VHDE++ 
Sbjct: 838 NS------------------IIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLI 879

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           E+P+ +   A ++   M  N ++   +PLK
Sbjct: 880 ESPEEECEKAQIIIKEMMEN-AYPLKIPLK 908


>gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
 gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
          Length = 866

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G+ V+  +   L+     E  +  +E+  L      +    ++L
Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   K   P   ++   R   S+     +  L  
Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T                                +Q +T      +++P+ 
Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I   EG  L+ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT   R+  K +   + Y  G   F  ++    ++            
Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISR----------- 719

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +A+ +     E +P                            ++   + +   +
Sbjct: 720 -----REAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589
               G  +    RR                 +P   +          R  +N        
Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+N             ++L VHDE++      + + 
Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
              +L   M +       +PL  +
Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855


>gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
          Length = 909

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/537 (16%), Positives = 186/537 (34%), Gaps = 76/537 (14%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            LK  LE+  ++ +  N  ++  +L    N  I +      +++         L +V   
Sbjct: 385 QLKPILEDVSISKIGQNLKYDAHILS---NYKIDLQGISDDVIVKSYC-----LNSVATR 436

Query: 116 LKLSSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKGDVTV--- 167
             ++        +L   +   +T           +    ++    +   Y   +V +   
Sbjct: 437 HNMN--------DLSEYYLNYQTINFVDILGKGKKQVTFNQVNVEIALLYVCENVIITSL 488

Query: 168 -------TREIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                      + RL  L    E  L  +   +   G  +DV +  T    +  +   + 
Sbjct: 489 LNHMLDEEIAQYPRLVKLYQNLELPLIKVLLCMERNGVELDVNILSTQQLDITQQMEDIK 548

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            ++  L    V +    ++++  LF   GL L  L + T + V S+N++          +
Sbjct: 549 NQVFELADN-VFNLESPKQIQRILFESKGLGLIPLRK-TPKGVPSTNEEALKLLDHPVVD 606

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                       L +   ++       V P +      R H   
Sbjct: 607 L--------------------------ILSYRTLAKLNSTYLEVLPRKIDLNTHRLHTSY 640

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +Q++T      +S+P+   I        C+R   I  +G  ++ AD + IE R++  ++ 
Sbjct: 641 NQVVTATGRLSSSNPNLQNIPIFSEQGSCIRGAFITGKGNVIISADYSQIELRIMTQLSK 700

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L+AF   +D++  T +  FN+   +VT + R   K +   L Y   A     +A  
Sbjct: 701 DQNLLEAFNNDKDVHSETASTMFNIPIDEVTSEYRRRAKAINFGLIYGMSAY---GLAKQ 757

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++       + T      + D      +  +N  E A    ++ T   R +    Q +
Sbjct: 758 IGVSRTKAKQYMDT------YFDNYPSVLYYMDNIKEIAKVQGYVETIMGR-RLYLPQIN 810

Query: 515 SRVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           ++   L    L  A    ++   A I +K       ++ +D  ++ +++     LV+
Sbjct: 811 AKNKMLQQHALRTAINAPMQGSSADIIKKSMFDVYTWIGQDNPDIRMIMQVHDELVF 867


>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13]
 gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13]
          Length = 866

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G+ V+  +   L+     E  +  +E+  L      +    ++L
Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   K   P   ++   R   S+     +  L  
Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKA 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T                                +Q +T      +++P+ 
Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I   EG  L+ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT   R+  K +   + Y  G   F  ++    ++            
Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +A+ +     E +P                            ++   + +   +
Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589
               G  +    RR                 +P   +          R  +N        
Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+N             ++L VHDE++      + + 
Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
              +L   M +       +PL  +
Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855


>gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 908

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 107/657 (16%), Positives = 184/657 (28%), Gaps = 160/657 (24%)

Query: 34  AFGFDDHPVELWDCVHDPVM-----PQVLKEA--------LENTDVTIVAHNSYFERTVL 80
           A+      V                P  L EA        L +     V H++    + +
Sbjct: 354 AWALGTGSVAEVALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAK---SAM 410

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
           +        I        LA     P       +AL L        + L          +
Sbjct: 411 RVFAEHGWSIEGVTMDTALAAYLVKPGRRSFDLDALSL--------EYLHRELAPAAVAD 462

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTIND 194
                      EA  L  +  +  + +      RLE +         E     L   +  
Sbjct: 463 GQLAFGADEGAEAEALMVQ-ARAILDLGEAFGSRLEEVGAADLLRDMELPTSALLARMER 521

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G   D A    + Q+      +  +E  +   G   +    ++L+  LF E  L     
Sbjct: 522 HGIAADRAHLEAMEQMFAGAVQQAVKEAHA-AAGHEFNLGSPKQLQEVLFGELALPKTKR 580

Query: 255 TETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+T       +   L  Q    + V   R R      + +  L++ + +DGR+  T    
Sbjct: 581 TKTGYTTDADALAWLATQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADGRIHTT---- 636

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366
                                       +Q +       ++DP+   I         +R 
Sbjct: 637 ---------------------------FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRR 669

Query: 367 CVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T  A+ F V  + V 
Sbjct: 670 GFVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVD 729

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K M   L Y   A    +      +       L                    
Sbjct: 730 AEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAAEARAL-------------------- 766

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRR 544
                                         R   + + L +  ++    G  A +  +RR
Sbjct: 767 ------------------------MDAYFERYGGVRDYLRRVVDEARATGYTATLFGRRR 802

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            +P +                                ++  +  RE      L   I Q 
Sbjct: 803 YLPDL--------------------------------SSDNRQRREAAERMALNAPI-QG 829

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654
            + DI+   M+    A         ++L VHDEIV E    +      L    M   
Sbjct: 830 TAADIVKIAMLKVDGALRETDLASRMLLQVHDEIVLEVAPGERPAVEELVRREMADA 886


>gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
 gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
          Length = 880

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/488 (15%), Positives = 144/488 (29%), Gaps = 119/488 (24%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           L      E         +  RG  VD          +     +L + +     G   +  
Sbjct: 477 LSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEA-GEEFNIN 535

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF    L     T+T       VL   + L P    +   R      +    
Sbjct: 536 SPKQLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTY-- 593

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                                A     + G            R H + +Q IT      +
Sbjct: 594 ---------------------ADGLANYIGDD---------ERIHGKFNQTITATGRISS 623

Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           ++P+   I     +   +R   +  EG   V AD + IE RVLA ++G++  + A+E  +
Sbjct: 624 TEPNLQNIPARVELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYEMEQ 683

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T +  F V   QV+  QR   K +   + Y   A    +      +        +
Sbjct: 684 DIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQ---DLKITRKQAQEYI 740

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                  ++ +     +       E   E+ F+ T  +R++     K S   +       
Sbjct: 741 D------KYFETYPKVKEYLNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQ------- 787

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                                                       R+ G  R  +N+  + 
Sbjct: 788 --------------------------------------------RNFGE-RVAMNSPIQ- 801

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   G   + I  A+ R      M +   K    ++L +HDE++ E  D++     
Sbjct: 802 --------GSAADIIKIAMIR----VNMELKKRKLKSRLILQIHDELLIEAHDSE---VE 846

Query: 646 MLYHLMTS 653
            +  ++T 
Sbjct: 847 EVKGILTR 854


>gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/648 (15%), Positives = 190/648 (29%), Gaps = 154/648 (23%)

Query: 34  AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80
           ++G     VE           +W D        + +  A L + D     H++      +
Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +A       +    C   LA     P   A K         +  + E ++         +
Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVED--------NS 447

Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
            + + D  + +  E+        +  DV     E     E L   E  +     ++   G
Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAG 507

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
              D+ +   L    D   T+ ++         + +    ++L+  LF +  +     T+
Sbjct: 508 IAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTK 566

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313
           +       +   L       F   +   R A+     ++ L++ +  DGR+  T      
Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q +       + DP+   I         +R   
Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  
Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR+  K M   L Y   A         +                                
Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                              K+      SR  ++   L +  +Q    G       RR   
Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP                  T+T +  R+      L   I Q  + 
Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649
           D++   M+   +          ++L VHDE++ E    +E     +  
Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864


>gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +  ++   G+ V+  +   L+     E  +  +E+  L      +    ++L
Sbjct: 467 DIELPLETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   K   P   ++   R   S+     +  L  
Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +++DG +  T                                +Q +T      +++P+ 
Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613

Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I   EG  L+ AD + IE RVLA ++G++  + AF    D++ 
Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V   +VT   R+  K +   + Y  G   F  ++    ++            
Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +A+ +     E +P                            ++   + +   +
Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589
               G  +    RR                 +P   +          R  +N        
Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                       +Q  + DI+   M+N             ++L VHDE++      + + 
Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
              +L   M +       +PL  +
Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855


>gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
 gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
          Length = 843

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/501 (19%), Positives = 163/501 (32%), Gaps = 128/501 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VD      + + ++    +L++ +     G   +    ++L
Sbjct: 441 EVELPLADVLAEMERVGMPVDARTLEEVGREIERRIAELEEAIFE-DVGHPFNIGSPKQL 499

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF E GL     T+T      +VL       P A ++   R  A       +  L++
Sbjct: 500 SEVLFEELGLPPVRRTKTGYSTDAKVLQQLALEHPIAERIIAWRELAKLKGTY-VEGLLK 558

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  DGR+                               H  L+Q  T      +  P+ 
Sbjct: 559 LVGEDGRI-------------------------------HTTLNQTTTATGRISSDSPNL 587

Query: 357 LQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R    AS G+ LVVAD + IE R+LA M+ E   ++AF+ GED++  
Sbjct: 588 QNIPVRTETGMRIRDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTR 647

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F+V P  VT + R   K++   + Y                              
Sbjct: 648 TAAEVFDVRPESVTPELRRRAKMVNFGILYGISGYGLAT--------------------- 686

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                        +   HP  A          +R  + + ++H RV+E    + ++  + 
Sbjct: 687 ------------RLGNVHPAEA----------DRYIQRYFERHPRVTEF---IRKSLAEA 721

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            E G A     RR                 +P  R+             N   R+L    
Sbjct: 722 EELGYATTLFGRRRY---------------VPELRN------------KNKNVRKLGERI 754

Query: 592 TYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
            +  +     VQ  + DI+   M          G D+++ VHDE+V +           +
Sbjct: 755 AFNAR-----VQGSAADIIKVAMVDLAPRLGPLGADMLMQVHDELVFDVDRD---RVEEV 806

Query: 648 YHLMTSNPSWAKGL--PLKAE 666
             L       A  L  PL+ E
Sbjct: 807 AALAAERMVAAYDLDPPLEVE 827


>gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium]
          Length = 803

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 148/432 (34%), Gaps = 68/432 (15%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           EQ L  + Q IN  G  +D A    L+  +  E T L+ ++ +   G   +    +++  
Sbjct: 394 EQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHA-GREFNINSPKQMGE 452

Query: 242 WLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            LF E GL  ++  +T      T +  L   ++  P   ++   R    +     ++ L 
Sbjct: 453 VLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYR-ELQKLVSTYIDNLP 511

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
             +++DG                               R      Q         + +P+
Sbjct: 512 PLVSADG-------------------------------RLRTTFVQTGAATGRMASQNPN 540

Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I      S  +R   +AS G  +V  D + IE R+ A ++ ++  ++ F  GED++ 
Sbjct: 541 LQNIPIRTEESKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHT 600

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               R F V P +VT++ R   KV+   + Y  G  A +      G +            
Sbjct: 601 GVAVRVFGVTPEEVTREMRRKAKVINFGILYGMGVNALRGNLGE-GTSREEAQEFFNA-- 657

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               + +         E     A ++ +  T   R ++ +    S    +  +  +    
Sbjct: 658 ----YFNTFTRLAEYLEETKAFARKNGYTETLFGR-RRHFPGMQSTAPFIRAQAERMAIN 712

Query: 531 TIENGKAIIARKRRD---VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
               G A  A +         +  +K  +++ ++L     L++ ++ NN           
Sbjct: 713 APVQGTAADAMRVAMNLVYQYIQTEKKTDDVHILLQVHDELLF-EIKNNV---------- 761

Query: 588 TREYTYGGKLTE 599
               T   KL E
Sbjct: 762 --LETEIPKLVE 771


>gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 939

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/643 (14%), Positives = 197/643 (30%), Gaps = 160/643 (24%)

Query: 57  LKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAV 112
           +K  LE+  V  V  N  ++ R  LK    ++        T++++ S         +  +
Sbjct: 413 IKPYLEDPTVKKVGQNIKYDYRIFLKHGIQMN----SIEDTMLMSYSLDAGKNRHGMDLL 468

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E     + K    K++        T + +                +Y   D  +T  ++
Sbjct: 469 SELH--LNHKTISFKDVAGIGKSQVTFDFV----------DIEQAKDYACEDADITLRLY 516

Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           K  E             + E+ L  +  ++ + G  +D  +   L++  ++E   L++++
Sbjct: 517 KMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKLSKKFEIEIQNLEKKI 576

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVF 277
             +      +    ++L   ++ +  +     T+     T   VL             V 
Sbjct: 577 FKIAK-EEFNIGSPKQLGDVIYEKLKIAGSKKTKKGNFATNVAVLEDLASQGHEFPKLVL 635

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           N R +                               S+         P     +  R H 
Sbjct: 636 NWRQK-------------------------------SKLKNTYTDTLPTYINAKSKRVHT 664

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                 T      +++P+   I         +RS  ++ +  KL+ AD + IE R+LA M
Sbjct: 665 SFLLAATTTGRLASANPNLQNIPIKNIEGKEIRSAFVSDKNSKLISADYSQIEMRILAHM 724

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
              +   KAF   ED++  T ++ F+V+  +V +D R   K +   +             
Sbjct: 725 GDVKELKKAFLNKEDIHTLTASQIFDVSLKKVDEDMRRKAKAINFGII------------ 772

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++    A  +  ++      +AENF +                             
Sbjct: 773 --YGISSYGLAKQISVSN-----SEAENFLKSYF-------------------------G 800

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           K   + +  NE                         +   +    +  +    R   + +
Sbjct: 801 KFPEIRDFMNE------------------------NITFCRKNGYVKTLF--DRKCHFPN 834

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626
           + +     N T R                +Q  + D+L   M+   K          +++
Sbjct: 835 INDK----NHTLRTFQER-----ACINAPIQGTAADLLRLAMIQIDKKISAKEIPASLLI 885

Query: 627 TVHDEIVCETPDTDEFNASM-LYHLMTSNPSWA--KGLPLKAE 666
            VHDE++ E  + D  +    + H M +         +PL  +
Sbjct: 886 QVHDELLLECKEKDVSSVQQKIAHEMENASEPLVKFSIPLTVD 928


>gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1]
 gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1]
          Length = 903

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 111/643 (17%), Positives = 206/643 (32%), Gaps = 152/643 (23%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSA 108
            ++   +   L   D+     N+  E  VL     L I      ++    L  +    + 
Sbjct: 377 ELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 435

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-------RNKPNHREAWRLFGEYC 161
           L  +     +  +   E      +F   E +E L+             H  + +   ++ 
Sbjct: 436 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDH- 494

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                + R+I          E  L  +  ++   G  +D A    L Q  D    +L+++
Sbjct: 495 -QQAELYRQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQ 543

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFN 278
           +     G   +    ++L   LF    +     T+T       VL    +  P    +  
Sbjct: 544 IYEEA-GQEFNINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQ 602

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R  A +     +  L+E +                               P  S+ H  
Sbjct: 603 YRQLA-KLNSTYVKGLLEVV------------------------------NPDDSKIHTR 631

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392
             Q +T      + DP+   I         +R   + S EG ++  +D + IE RVLA +
Sbjct: 632 YLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHV 691

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKM 451
            G++   KAFE+GED++  T    F ++  Q +T DQR   K +   + Y         +
Sbjct: 692 TGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDF---GL 748

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   G +      +++T      + +      W+ ++    A +  ++ T          
Sbjct: 749 AQRLGTSRIEGKEIIQT-----YFHEFPKVKNWI-DSIIALAHKQGYVET---------- 792

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                      IA++RR +P ++ K           + RS    
Sbjct: 793 ---------------------------IAQRRRYLPDIHSKNF---------NLRSFA-- 814

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625
                R+  NT                   +Q  + DI+   M+   +A         ++
Sbjct: 815 ----ERTATNTP------------------IQGSAADIIKIAMIKMQQALDDNHLKAKML 852

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           L VHDE++ E P  +      L   +M S       +PL+ E 
Sbjct: 853 LQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEA 893


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 99/657 (15%), Positives = 200/657 (30%), Gaps = 150/657 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            AF FD           D    + L++  E  D   V+H    +  V  +   ++    +
Sbjct: 331 IAFSFDGTT-----LYSDVERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECK-SK 383

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           ++ T ++A       +   +   LK   +               E      DR +     
Sbjct: 384 YLDTAIMAYLLNPSESNYDLERVLKRYLKVDI--------LSHEEVFGKGKDRRRYEEVS 435

Query: 153 AWRLFGEYCKGDVTVTREIFKRL----------EPLSSKEQELWYLDQTINDRGYCVDVA 202
              +    C    +   E+  +L          + L   E  L  + +++   G+ +D  
Sbjct: 436 EEVMAEYICGR-CSHLFELKDKLMAFIEEMDMKKLLLEIEMPLVEVLKSMEVDGFTLDRN 494

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
           +   L++ +D   +++  ++     G   +    ++L  +LF +  L +   T+T     
Sbjct: 495 VLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKTKTGYSTD 553

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
               ++LT     V                               +++   ++       
Sbjct: 554 SEVLEQLTAYNDIVSE----------------------------IIEYRQLTKLKSTYIE 585

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKL 376
            F P       R H    Q++       +++P+   I         +R   I   +   +
Sbjct: 586 GFLPLMD-ENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDGYI 644

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + IE RVLA ++ ++  ++AF   ED+++ T +  F V P  VT + R   KV+ 
Sbjct: 645 VSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKVVN 704

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y         +A    ++       +        + +     +   E     A E+
Sbjct: 705 FGIIYGISDY---GLAKDLKISRKEAKEYIDN------YFEKYKGVKEYIEKVIRFAKEN 755

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++                                       I  +RR +P +  +    
Sbjct: 756 GYV-------------------------------------TTIMNRRRYIPEINSRNFT- 777

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                         +     R  +NT                   +Q  + DI+   M+ 
Sbjct: 778 --------------QRSQAERLAMNTP------------------IQGSAADIIKMAMVK 805

Query: 617 AT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                        ++L VHDE+V +T  D  E    +L   M +       +PL  E
Sbjct: 806 VYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVIK--LKVPLVVE 860


>gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
 gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
          Length = 912

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 148/399 (37%), Gaps = 45/399 (11%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L  +   +  +G  +DV      +  +D E  K+++ +     G   +    +
Sbjct: 510 LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLKIEKAIYEEA-GEEFNINSPK 568

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF++  L     T+T     +   + L      +                     
Sbjct: 569 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                  R  L +   ++         P       SR H   +QI T      +SDP+  
Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I         +R   +A  GK L+  D + +E RVL  M+ ++  ++A+   +DL+  T
Sbjct: 661 NIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLT 720

Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             R FN++ ++ V+++QR I K++  ++ Y         +A    + +   +  +K    
Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E++    +F R + E   EH       G      K+      S+   + ++  +    T
Sbjct: 776 FEQYPKVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +  G A    K+  V +  + KDK  + L+L     L++
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQVHDELIF 869


>gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a]
          Length = 829

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 139/400 (34%), Gaps = 52/400 (13%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   +   G  +D        + V  +  K+ +E+     G   +    +
Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYA-GYEFNIGSPK 487

Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L + LF +  L     T+T       VL S     P    +   R    +     +  L
Sbjct: 488 QLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYRALT-KLQNTYVTGL 546

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ +  DG                               R H    Q  T      +++P
Sbjct: 547 LKVVGEDG-------------------------------RIHSTFKQTETRTGRISSAEP 575

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I     +   +R    A +G  LV AD + IE RVLA ++G++   KAF  G D++
Sbjct: 576 NIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T ++ FN     VT D R+  K +   + Y  GA +        G+++   +  +++ 
Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLS---KDIGVSVPKASEYIRS- 691

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                +    +      E     A  D ++ T   R ++  ++  ++   L     +  +
Sbjct: 692 -----YLSKYSGIAQYMELTVAKAKRDGYVETMFGR-RRYIKELAAKNKNLQAFGERVAK 745

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSL 568
            T   G A    K   + +    KD   +  L+L     L
Sbjct: 746 NTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVHDEL 785



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 577 RSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEGMMNATKAG------YDIVLTVH 629
           R Y+     +      +G ++ +N  +Q  + DI+   M+              ++L VH
Sbjct: 723 RRYIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVH 782

Query: 630 DEIVCETPDT-DEFNASMLYHLMT 652
           DE++ E  +   E  A +L   M 
Sbjct: 783 DELIVEAKEDCAEKVALLLKEEME 806


>gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
 gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
          Length = 950

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/628 (15%), Positives = 200/628 (31%), Gaps = 128/628 (20%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
            +LK  LEN  +  + HN  F  ++LK     +I +   I  ++L       ++  + + 
Sbjct: 424 SILKPILENIKIKKIGHNMKFIFSLLKQH---NIHLSGPIFDVILELYVLYGTSNYQNIK 480

Query: 114 EALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-TVTREI 171
             L  ++      K + I    K    + + D    +      ++       +     + 
Sbjct: 481 RFLNKTTILDHIFKFQQIYNNNKYLIKKNIRDIQLESSCSTQLIYAISNLHQILWTEIKQ 540

Query: 172 FKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
              L+ +  + E  L  +   I D G  +D    ++ +  ++ +   L  +   LT G  
Sbjct: 541 HNELKKIFINIEIPLISVLSRIEDYGVLIDKKFLYSHSIKLNSQLNNLKTQAYQLT-GSS 599

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L+  L+ +  L +   T                        +  + + ++ K
Sbjct: 600 FNLDSPKQLQEILYNQEKLPIFKKTPHGAPSTSEEV------------LKKLSKKHSIPK 647

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +                L++   S+               + +R H   +Q  T      
Sbjct: 648 I---------------ILKYRSLSKLKSTYTNKLISMINKKSNRIHTSYNQTRTSTGRLS 692

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +++P+   I         +R   IA E   ++ AD + IE R++A ++ +   +  F   
Sbjct: 693 STNPNLQNIPNRNYDGRKIRQAFIAPENSLIISADYSQIELRIMAHLSRDLKLINDFLEE 752

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +D++ TT +  F  +   VT +QR   K +   L Y   A     ++    +        
Sbjct: 753 KDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLIYGMTAF---GLSKQLSVTCQEAQKY 809

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           V        ++      ++MQ                     K + +K+  VS L     
Sbjct: 810 VD-----RYFQRYPGVMQYMQ-------------------YIKDYAKKNGYVSTL----- 840

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                           ++  +P +Y                    +  G  RS +N    
Sbjct: 841 --------------DGRKLYLPDIYSSNIS---------------QKKGAERSAINAPM- 870

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                            Q  + DI+   M++             +++ VHDE+V E  +T
Sbjct: 871 -----------------QGSAADIIKRAMISIDSWLQTDNIPVHMIMQVHDELVFEVNNT 913

Query: 640 -DEFNASMLYHLMTSNPSWAKGLPLKAE 666
             +     +  LM     +   +PLK +
Sbjct: 914 FVDIAVKQIRKLMEEC--FILNVPLKVD 939


>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
           HF4000_APKG10H12]
          Length = 891

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 103/649 (15%), Positives = 183/649 (28%), Gaps = 153/649 (23%)

Query: 46  DCV---HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
           D         +   L   LE+  V  + H+   +   L A       +   + T++ +  
Sbjct: 356 DLTGSLDGGTVFGTLGPMLEDPQVRKIGHDLKRDMLWLAAHEIRLRGLE--LDTMIASYL 413

Query: 103 NGLPSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                    V    L+ +  +      +  +  K        DR  P+          Y 
Sbjct: 414 LDATRTTPTVETVALEHAGYQALTADTVRGKGAKAPDF----DRLPPD------GVLAYA 463

Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
                +  +  + L     +E          Q L  +   I   G  V        ++ +
Sbjct: 464 CERADLPLQAAEPLRARLDQERLAELYRELEQPLIPVLADIETAGIQVATDALAVQSRRM 523

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-----CQRVLSSN 266
           D + ++L  ++ +L  G   +     +L   LF +  L     T  T        VL   
Sbjct: 524 DADLSELQSQIYTLA-GEEFNINSPRQLSAILFEKLALPTRKKTGKTRAASTAADVLEEL 582

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            +       V   R                                  +         P 
Sbjct: 583 AQHHALPRLVIEWR-------------------------------AVQKLKGTYVDALPQ 611

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381
              P   R H   +Q +       +SDP+   I     +   +R   +A +G  L+ AD 
Sbjct: 612 LVRPDTGRVHTSFNQAVAATGRLSSSDPNLQNIPIRTPLGREIRRAFVARDGHVLISADY 671

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++ +    +AF   ED++  T    F         + R   K++  AL Y
Sbjct: 672 SQIELRVLAHLSADTALTQAFIRNEDIHDKTALHVFGPDSGLDAHELRRRAKIINYALLY 731

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              A    +    T                    + A+ F     E +P           
Sbjct: 732 GKTAFTLSRDIGVTP-------------------QAAQAFIDAYFEGYP----------- 761

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                             +   L    ++  E+G+      RR                +
Sbjct: 762 -----------------AVRGFLDGVIDEARESGEVRTMFGRR---------------RL 789

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
           +P  R+             N   R      T         +Q  + DIL   M++   A 
Sbjct: 790 VPELRN------------RNGQIRAAAERVT-----VNMPIQGTAADILKRAMIDLAGAL 832

Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
                ++LTVHDE++ E P  +  + + L    M         +PL+ +
Sbjct: 833 PPSAPMILTVHDELLIEPPRDEADSVADLVRDRMERAAD--LTVPLRVD 879


>gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24]
 gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24]
          Length = 955

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 108/644 (16%), Positives = 188/644 (29%), Gaps = 134/644 (20%)

Query: 39  DHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           D      D        + +  A L + +   V H        LKA     + +   +   
Sbjct: 416 DGAAVYIDLSGQDAEAENVLAAWLRDPEAPKVMHGFK---AALKALSARGLELEGVVDDT 472

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            ++     P         L      +E    +        + +   D             
Sbjct: 473 SISGYLIQPDRRTYELAELAQHHLNIEISTAVAKAGQLELSFDG-DDSAAAGELVHAAAV 531

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
                       +  K  E LS+ E  +  +   +   G  +D+            +   
Sbjct: 532 VHALSRYFEAELKERKAEELLSTLELPVSQVLADMELAGIAIDMQRMDE-QLADLAKVID 590

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
             QEL     G   +    ++L+T LF E  L      ++      +S K L  +    F
Sbjct: 591 NAQELAFAAIGHEVNLGSPKQLQTVLFDELQLPKTKKIKSGYTTDAASLKNLLEKTGHEF 650

Query: 278 NNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
             ++ A R +      L +L +++  DGR+  T                           
Sbjct: 651 LVQLMAHRESSKLRQMLESLKKSVAEDGRIHTT--------------------------- 683

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARV 388
                 Q +       +++P+   I         VR   + SEG + L+ AD + IE R+
Sbjct: 684 ----YAQNVAATGRISSNNPNLQNIPIRSEEGRRVRGIFVVSEGYECLLSADYSQIEMRI 739

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G+   ++A+  GEDL+    +  F+V   QVT   R+  K M   L Y   +   
Sbjct: 740 MAHLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSF-- 797

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             ++    ++++    L+K                                         
Sbjct: 798 -GLSKQLEISVDEARTLMK----------------------------------------- 815

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
              +   R   + + L    +Q   +G       RR                 LP     
Sbjct: 816 ---EYFDRFGAVRDYLRGVVDQARIDGFTATIEGRRRY---------------LP----- 852

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------Y 622
                      L +T RQL RE      L   I Q  + DI+   M+             
Sbjct: 853 ----------DLTSTDRQL-RENAERIALNSPI-QGSAADIIKRAMLGVHAELKAQGLKS 900

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            ++L VHDE+V E    +      L    M S       +PL  
Sbjct: 901 RMLLQVHDELVLEVAAGEREAVEKLVTEQMGSAAD--LSVPLDV 942


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 88/522 (16%), Positives = 178/522 (34%), Gaps = 84/522 (16%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG- 113
           +++K+  E+ ++  ++H+      +L+     DI    +     +A     PS    +  
Sbjct: 378 ELIKKLFEDENIKKISHDIKNIYVILRKY---DIDAKNFSFDTKIAAYLLQPSKSDYILR 434

Query: 114 ----EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
               E L ++  + +E  ++   +C  E +E L    K  + E   LF            
Sbjct: 435 DIILEKLSINIHESDEESKIKETYCIKEIYEKLQKEIKSANME--ELFYNV--------- 483

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                       E  L  +  ++   G+ +D      + +   V+   L++E+       
Sbjct: 484 ------------ELPLVKVLASMECEGFKIDKDRLTEIGEKFKVKIETLEKEIHEFAD-E 530

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286
             + +  ++L   LF +  L +   T+T       VL   K   P   ++   R      
Sbjct: 531 DFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIEYRQITKLD 590

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +   +  L   ++ D                                + H   +Q +T  
Sbjct: 591 STY-VEGLKHVIDED-------------------------------GKIHSSFNQTVTTT 618

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +++P+   I         +R   + + E   +  AD + IE RVLA +A ++  + 
Sbjct: 619 GRLSSTEPNLQNIPIKYEMGREIRKVFVPNNEESVIFSADYSQIELRVLAHIANDEKLID 678

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+  +D++  T +  F V   +VT   R+  K +   + Y  GA +         ++  
Sbjct: 679 AFKHHKDIHTITASEVFKVHIDEVTPLMRSNAKAVNFGIVYGIGAFSLS---KDINVSRK 735

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                + T      + + + +   +     +    D F+ T   R K+   +  SR   +
Sbjct: 736 EAKEYIDT--YFSRYPNVKKYIDEIISKAEQ----DGFVTTIMNR-KRYIPEVQSRNKIV 788

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +   +    T   G A    K   V  VY +  K NL   L
Sbjct: 789 RSFGERLAMNTPIQGSAADVIKLAMVH-VYEELIKRNLKSTL 829


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 108/637 (16%), Positives = 199/637 (31%), Gaps = 149/637 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  V  +  N  ++ TVL+    ++I  +    T+V++       +L   G   
Sbjct: 403 LKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYD--DTIVMSFDLDAGQSLAGHGM-- 457

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKRL 175
                  E  K  +   C      C   +++ +  E       EY   D  VT  ++K  
Sbjct: 458 ------DEAAKTHLNHICISFKDVCGTGKSQISFAEVPLDKATEYAAEDADVTLRLWKLF 511

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +   + E          + L  +   +   G  VD      L+         L+ E+  L
Sbjct: 512 KTRIANEGATRVYELVDRPLVSVIAKMEHEGIKVDREALSRLSAEFTAGIAALETEIHGL 571

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             G   +    ++L   LF + G       ++      ++  ++L  Q  ++        
Sbjct: 572 A-GQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKVQGAEIA------- 623

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                            G++   L +   S+           Q     SR H        
Sbjct: 624 -----------------GKV---LDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSLSGA 663

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   +A  G  ++ AD + IE R+ A MA      
Sbjct: 664 QTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALK 723

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T  + F     +V +D R   K +  A+ Y  G   +  +A    ++ 
Sbjct: 724 EAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILY--GISRW-GLAGRLEISA 776

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                           ++A++      E  P  ++                         
Sbjct: 777 ----------------DEAQDMISRYYERFPGISL------------------------- 795

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               +    E+    G       R+     +  + K           S+ +   G  R+ 
Sbjct: 796 ---YITDTIEKARSKGYTETLFGRKT----WFPRIKA----------SVQHERQGAERAA 838

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEI 632
           +N                    +Q  S DI+   M     A          ++L VHDE+
Sbjct: 839 INAP------------------IQGTSADIIKRAMARMGPALAAEGLHDVKMLLQVHDEL 880

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAE 666
           V E P+ D E  ++++  +M           +PL  E
Sbjct: 881 VFELPEGDVEQASAVIRRVMEGAAEPIVKLSVPLGVE 917


>gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10]
          Length = 887

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/512 (16%), Positives = 169/512 (33%), Gaps = 136/512 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+   L++++     G   +    ++L  
Sbjct: 489 EIPTARVLAKMEINGMKVEASTLIQLQNEFAVKLQDLEKKIYQQA-GEEFNLNSPKQLGH 547

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 548 ILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVKEILDYRQIAKIQSTY-VKGLLDVI 606

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H    Q +T      + DP+   
Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635

Query: 359 II-----SDCVRSCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           I         +R   +    +G      D + +E RVLA ++G+    +AF+TG D++  
Sbjct: 636 IPTRTEEGKQIRKAFVPSDPDGYIF-SCDYSQVELRVLAHVSGDVHMQEAFKTGYDIHSH 694

Query: 412 TYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           T  + F++  P +VT   R   K +   + Y         ++   G++       +    
Sbjct: 695 TAMKIFHLDSPDKVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKQAKEFIDN-- 749

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                           E +P                            ++ + + +A ++
Sbjct: 750 --------------YFEQYP----------------------------QIKDYMDKAVQE 767

Query: 531 TIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
             E G A  I  +RR +P ++ KK          + R+         R+ +N+       
Sbjct: 768 AREKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------ 806

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N  K          +V+ VHDE++ + P  +   
Sbjct: 807 ------------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELET 854

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
              +   +M S       +PL A+ G+    Y
Sbjct: 855 IKKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884


>gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12]
 gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12]
          Length = 595

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 110/578 (19%), Positives = 199/578 (34%), Gaps = 85/578 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  Y++     L  FG       +        +P+ + EAL   D  +V  N+
Sbjct: 40  VDTETTGLDIYSDTFRCRLVQFGTQSEAW-VLPVELGGGIPENVIEALYEVD-KLVMQNA 97

Query: 74  YFERTVLKA--CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--------SSQKM 123
            ++  VL       ++    + + T +LA+    P   +A G    L          ++ 
Sbjct: 98  SYDLQVLDQIGYAAMEDLWPKVLDTQILAKLVD-PRPFEAGGFGHSLEELIAEFIDKEQA 156

Query: 124 EEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           E  K L+ +  K          +     H E    +  Y   D   T  I  +L PL   
Sbjct: 157 ENVKGLMTKLAKEHKTTKAKIWSTIDLFHPE----YLTYAGMDTIFTARICSKLAPLVPD 212

Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E +L  +   I+ +G+ +DV  A  L+     E++  D    +  YGL  + 
Sbjct: 213 VSRSLVPYEHKLSEICSYIDRKGFLLDVEYAQALSDKWLYEKSVWDAIAFT-EYGLE-NV 270

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRSAVL 289
              ++    L  E G+ ++  TE+  ++V    L S      +   +     +  +    
Sbjct: 271 NSTDQCADAL-EEMGVKIKGRTESGKRQVNDDLLQSLSDDGNELAAIIQEAKKLGKWNKT 329

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +   +   +S+ R    +  L A RT R S    P Q LP                   
Sbjct: 330 WVAKFLSVRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASDWI-------------- 374

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         VR C +A  G+ +   D    E RVLA ++G+Q  ++AF+TG DL+
Sbjct: 375 --------------VRRCFVADPGQVMASVDYQTQELRVLAALSGDQTMIEAFKTGADLH 420

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T            ++  R +GK+      Y GGA   + +A    ++  T   ++   
Sbjct: 421 QMTA---------DASQVVRKVGKMANFLTVYGGGA---KTLAEQAHIDFPTAKRVLDG- 467

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                +           +     A  + +I  A  R         SR     N + Q+  
Sbjct: 468 -----FAKTYPGVARYSKKLAMEAGRNGYIVNAMGR---RLPVDSSRTYSALNYMIQSSS 519

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +     I   +    P + +      +   LP+G++
Sbjct: 520 RDVTCRALIRLHEAGFTPYLRLPIHDEVVA-SLPAGQA 556


>gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
 gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
          Length = 917

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 96/538 (17%), Positives = 172/538 (31%), Gaps = 137/538 (25%)

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY------LDQTINDRGYCVDVALA 204
            E  +      +  V +   + + LE + SK            +   +   G  VD    
Sbjct: 481 AEKAQQQILRARAVVDLAAALDEELEKIESKPLLEEMELPLLRVLGVMEATGIAVDTDHL 540

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
            +L+     +R +  +       G   +    ++L+  LF + GL     T+T      +
Sbjct: 541 ESLHS-DFSDRIRAAEAAAFEEIGEQINLGSPKQLQVILFEKLGLPKTKKTKTGYTTDAA 599

Query: 265 SNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           + + L  +    F   +   R A    + +  L++A+ SDGR+  T              
Sbjct: 600 ALEALYEKEPHPFLQYLLEHRDATRLKVTVEGLLKAVASDGRIHSTF------------- 646

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-K 375
                             +Q +       ++DP+   I         +R   +A EG   
Sbjct: 647 ------------------NQTVAATGRLSSTDPNLQNIPVRTEAGRQIRHAFVAGEGYET 688

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++ ++  ++AF TGEDL+    A++F V   +VT D R   K M
Sbjct: 689 LMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVGAKAFGVPIDEVTPDMRRRVKAM 748

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y   A     +A+   ++ +                                   
Sbjct: 749 SYGLAYGLSAF---GLAAQLKISRDEA--------------------------------- 772

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKD 554
                      K       +R   + + L     +   N     I  +RR +P +     
Sbjct: 773 -----------KDQMEAYFARFGGVRDYLQDVVTEATRNEYTETIFGRRRYLPDL----- 816

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                                      T+T ++ RE      L   I Q  + DI+   M
Sbjct: 817 ---------------------------TSTNRMRRESAERMALNAPI-QGSAADIIKVAM 848

Query: 615 MNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
           +N  K          ++L VHDE+V E    +      L    M +       +PL+ 
Sbjct: 849 INLDKQIRAAGLTSRMLLQVHDELVLEVAAGERDELEKLVRDTMGTAAE--LSVPLEV 904


>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
 gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
          Length = 875

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/565 (15%), Positives = 185/565 (32%), Gaps = 68/565 (12%)

Query: 35  FGFDDHPV-------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNL 86
           +  D+ PV       +++    +  + +  KE  E+ D+        F+    +      
Sbjct: 328 YYVDNEPVIFAIYTDKVY-ITRNVELVESFKEEFESKDINK----LSFDIKPCIYHLMRY 382

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            I I      +V+      PS  +        K+     +  +++  +    +T     +
Sbjct: 383 GIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           +   N+   + +F      +     E    +      E  L  +   +   G CV     
Sbjct: 443 KEIDNYVVKYMMFTNKL-YEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             + ++ + E   +++ +E L  G   +    ++L   LF +  L +    +T   T Q 
Sbjct: 502 VEMGELFEDEIKSIEKSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL +          +   R    +     ++ +V+ +  DG++                 
Sbjct: 561 VLEALSGRHEIIDYILRYRTIT-KLKTTYIDGMVDLIKKDGKI----------------- 602

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
                         H    Q I       +++P+   I         +R   + SEG  L
Sbjct: 603 --------------HTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNML 648

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RVLA +A ++  L AF+ G D++  T +  F V   +VT  QR+  K + 
Sbjct: 649 LDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVN 708

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y  G  +         +        +      E + D     +   E+      E 
Sbjct: 709 FGIVYGIGDYSLS---KDLHITRKEAKEYI------ENYLDTYKGIKQYMEDIVAIGKEK 759

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R ++   +  S+   + +   +    T   G A    K   V       ++ 
Sbjct: 760 GYVETIMNR-RRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEK 818

Query: 557 NLI-LMLPSGRSLVYRDVGNNRSYL 580
               L+L     L+     + R  +
Sbjct: 819 LKAKLILQVHDELIVDCPKDEREKV 843


>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
 gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
          Length = 933

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 114/671 (16%), Positives = 185/671 (27%), Gaps = 150/671 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLD 87
            V   A    D      D +      +    A L + D   VAH+         A     
Sbjct: 366 EVTGLALAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAHDVK---GPSHALLARG 422

Query: 88  IPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
             +   +    LA     P   +      A++   +++             +    L   
Sbjct: 423 WTLAGVVLDTALAAYLCRPDQRSYDLADLAVRHLKRELRAEGSTGGADADVDEQLTLDGS 482

Query: 146 NKPNHREAWRLFGE---------YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
           + P   +      E            G +    E       L   E  L  +       G
Sbjct: 483 DGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGTRLLHEVELPLVAVLAAQERVG 542

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  L   L         +   +   +  G   +    ++L+T LF +  +     T+
Sbjct: 543 IAVDDELLADLEARFAERVAQAQAQAYEVI-GTEINLGSPKQLQTVLFEQLDMPKTKRTK 601

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313
           T       +   L  +    F   +   R A      +  L +++  DGR+  T      
Sbjct: 602 TGYTTDADALAALFVKTEHPFLAHLLEHRDASRLRQTVEGLRKSVADDGRIHTT------ 655

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368
                                      Q+I       ++DP+   I         +R   
Sbjct: 656 -------------------------YQQMIAATGRLSSTDPNLQNIPIRTEEGRRIREAF 690

Query: 369 I------ASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           +      A +G + L+ AD + IE R++A ++G++  + AF +GEDL+    +R F VAP
Sbjct: 691 VVGPDAGAGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVGSRVFGVAP 750

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             VT + RA  K M   L Y   A         +                          
Sbjct: 751 VDVTPEMRAKIKAMSYGLAYGLSAFGLSNQLKIS-------------------------- 784

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 E  K    +   R   + + LH   E+    G      
Sbjct: 785 ---------------------TEEAKDLMDEYFQRFGGVRDYLHGVVEEARRTGWTETIM 823

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            RR                 LP                L +  RQ  RE      L   I
Sbjct: 824 GRRRY---------------LP---------------DLASDNRQ-RREMAERMALNAPI 852

Query: 602 VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN 654
            Q  + DI+   M++             ++L VHDE+V E    +      L    M   
Sbjct: 853 -QGSAADIIKVAMLDLDAGLREAGLRSRLLLQVHDELVLEVARGEREPLEELVRATMAGA 911

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 912 ADLA--VPLDV 920


>gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 907

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 113/629 (17%), Positives = 188/629 (29%), Gaps = 153/629 (24%)

Query: 54  PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           P  L EA        L +     V HN+     V++        +        LA     
Sbjct: 378 PSQLDEADENAFATWLADPAKPKVLHNAK---GVMRVFAEHGWTVEGVSMDTALAAYLVK 434

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
           P       +AL L        + L        T +           EA  L  +  +  +
Sbjct: 435 PGRRSFALDALSL--------EYLGRELEPAATADGQLAFGADEGAEADALMVQ-ARAIL 485

Query: 166 TVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            +     +RL+ +         E     L   +   G   D A    + Q+      +  
Sbjct: 486 DLGEAFGERLKEVGSADLLRDMELPTSALLARLERHGIAADKAHLEAMEQMFAGAVQQAV 545

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA---IQV 276
           +E  +   G   +    ++L+  LF E GL     T+T       +   L  Q    + V
Sbjct: 546 KEAHA-AAGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTDNELPV 604

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R R      + +  L++ + +DGR+  T                             
Sbjct: 605 IMLRHREQAKLRVTVEGLIKTIAADGRIHTT----------------------------- 635

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390
              +Q +       ++DP+   I         +R   +  EG + L+ AD + IE RV+A
Sbjct: 636 --FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 693

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y   A    +
Sbjct: 694 HLSEDEGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 753

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                 ++      L+ T                                          
Sbjct: 754 ---QLNIDAGEARALMDTYF---------------------------------------- 770

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                R   + + L +A ++    G       RR                 LP       
Sbjct: 771 ----ERFGGVRDYLRRAVDEARATGYTETLFGRRRY---------------LP------- 804

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDI 624
                    LN+  RQ  RE      L   I Q  + DI+   M+N  +A         +
Sbjct: 805 --------DLNSDNRQ-RRETAERMALNAPI-QGTAADIVKIAMLNVDRALQEANLKSRM 854

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHL-MT 652
           +L VHDEIV E    +      L    M 
Sbjct: 855 LLQVHDEIVLEIAPGERAKTEELVRREMA 883


>gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
 gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
          Length = 912

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 148/399 (37%), Gaps = 45/399 (11%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L  +   +  +G  +DV      +  +D E  K+++ +     G   +    +
Sbjct: 510 LMKNEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLKIEKAIYEEA-GEEFNINSPK 568

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF++  L     T+T     +   + L      +                     
Sbjct: 569 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                  R  L +   ++         P       SR H   +QI T      +SDP+  
Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I         +R   +A  GK L+  D + +E RVL  M+ ++  ++A+   +DL+  T
Sbjct: 661 NIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLT 720

Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             R FN++ ++ V+++QR I K++  ++ Y         +A    + +   +  +K    
Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E++    +F R + E   EH       G      K+      S+   + ++  +    T
Sbjct: 776 FEQYPKVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           +  G A    K+  V +  + KDK  + L+L     L++
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQVHDELIF 869


>gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
 gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
          Length = 871

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 150/445 (33%), Gaps = 74/445 (16%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L +    +   G  ++        + + ++  +L++E+     G   +    ++
Sbjct: 472 TDIEMPLVFTLYDMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYE-AAGEEFNINSPKQ 530

Query: 239 LKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L   LF + GL     T+T   T   VL       P   Q+   R      +    + L 
Sbjct: 531 LGVILFDKMGLKGGKKTKTGYSTAADVLDKLAPDYPVVAQILEYRQLTKLKSTYA-DGLS 589

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
             ++ DG                               R H + +Q IT      +++P+
Sbjct: 590 NYISGDG-------------------------------RIHGKFNQTITATGRISSTEPN 618

Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I     +   +R   I  +G   + AD + IE RVLA  +G++  + A++  +D++ 
Sbjct: 619 LQNIPVRMELGRLIRKVFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHR 678

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T ++ F+V   +VT  QR   K +   + Y   +    +      +     A  +    
Sbjct: 679 ITASQVFHVPFGEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAKYID--- 732

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
              ++       +   ++   HA E  ++ T   R +       S   +  +   +    
Sbjct: 733 ---DYFKTYPGIKLFLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQ-RSFGERVAMN 788

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +   G A    K   + +    K+K+    L+L     L+                    
Sbjct: 789 SPIQGTAADIIKIAMIGVNRRLKEKHMRSRLVLQVHDELL-------------------- 828

Query: 590 EYTYGGKLTENIVQAVSRDILAEGM 614
              YG +L E  V+A+ +D +    
Sbjct: 829 IEAYGPELEE--VKAILKDEMEHAA 851


>gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Streptococcus pyogenes M49 591]
          Length = 418

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/511 (17%), Positives = 164/511 (32%), Gaps = 127/511 (24%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++L+   + E  L  +   +   G  V+ A    + +   V    L QE+  +  G   
Sbjct: 8   HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEF 66

Query: 232 SSRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           +    ++L + LF +  L LE    T+T     +   ++L P A  V             
Sbjct: 67  NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK----------- 115

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                             L +   ++             L    + H    Q +T     
Sbjct: 116 -----------------ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRL 157

Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + DP+   I         +R     S E   L+ +D + IE RVLA ++G++  + AF 
Sbjct: 158 SSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 217

Query: 404 TGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            G D++ +T  R F +  A  VT + R   K +   + Y         +++  G+     
Sbjct: 218 EGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQA 274

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              + T      + +     +   EN    A +  ++                       
Sbjct: 275 KSYIDT------YFERYPGIKAYMENVVREAKDKGYV----------------------- 305

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                           + ++RR++P +              + R+   R     R+ +N+
Sbjct: 306 --------------ETLFKRRRELPDI--------------NSRNFNVRSF-AERTAINS 336

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET 636
                              +Q  + DIL   M+N  KA          +L VHDEIV E 
Sbjct: 337 P------------------IQGSAADILKISMINLDKALQAGGFRAKCLLQVHDEIVLEV 378

Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
           P+ +      L    M +    A  +PL  +
Sbjct: 379 PNDELTAIKKLVKDTMEAAVDLA--VPLCVD 407


>gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
          Length = 896

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 98/679 (14%), Positives = 210/679 (30%), Gaps = 170/679 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET + +D+ K           ++ F+F  +          H+              
Sbjct: 334 SFDTET-TSLDVRKA---------KIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLECAR 383

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG 113
           + +++  ++  V    HN  ++  +LK  F+  +    +   +++LA      +      
Sbjct: 384 ECIEQIFQSQYVI--GHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQSDTLCNLDF 441

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              K  + +M   K+++    K E    +  ++            EY   D     +++ 
Sbjct: 442 LMKKYFNHEMIHYKDIVG---KNENFSNILIQH----------ACEYASEDAAACYQLYF 488

Query: 174 RLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +L  L  +         E         +   G  +D+     LN     +  ++ +E+  
Sbjct: 489 KLRGLMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLGLNAETREKLHQISEEIFV 548

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281
           L      +    ++L + LF +  L     T++       VL+S     P   ++   R 
Sbjct: 549 LA-NKRFNLNSPQQLASILFDDLKLEASKKTKSGYSTSELVLNSLYDSHPIIPKILEYR- 606

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            + +     +  L+E   SD                                R +    Q
Sbjct: 607 ESFKLYSTYIEPLIEHAKSDLE-----------------------------HRIYTSFMQ 637

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      + +P+   I         +R   IA E   L+  D + IE R+LA  + ++
Sbjct: 638 TGTSTGRLSSKNPNLQNIPVKTLEGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQDK 697

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF    D+++ T  + F     ++ +++RA+ K +   L Y              G
Sbjct: 698 AMIDAFLQDADIHLETAKKIFG---EEMAQEKRAVAKSINFGLIY--------------G 740

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +     +  +K N     +++A+ + +                          +      
Sbjct: 741 MGPKKLSETLKIN-----FQEAKTYIQ-------------------------NYFTSFPM 770

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +     E  +   +     K ++ R R+       +  K   +                 
Sbjct: 771 IKNFLKEQEEFILEN-GYSKTLLGRMRKFDFEGVQEYQKAAFL----------------- 812

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVC 634
           R  +N                   I Q  + DI+   M     +  +  ++L VHDE++ 
Sbjct: 813 REGINA------------------IFQGSAADIIKMAMNKIMHSSLESKLLLQVHDELIF 854

Query: 635 ETP-DTDEFNASMLYHLMT 652
           E P +     A  +  +M 
Sbjct: 855 EAPKEIASKEAKKIALIME 873


>gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
 gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
          Length = 878

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/485 (19%), Positives = 163/485 (33%), Gaps = 118/485 (24%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  +DV     +      E   L   +  L  G   +    ++L   LF + GL  
Sbjct: 491 MERVGAQLDVDALAAMGSATRGEIDSLRAHIHELA-GEEFNVDSPKQLGVILFDKLGLPH 549

Query: 252 EDLTETTCQRVLSSNKKL---TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T T      ++ KKL    P A +V   R   ++ +   ++ L      DGR     
Sbjct: 550 GKKTRTGYSTNAATLKKLQSIHPIADEVLRYR-ELAKMSSTYIDALPRMRADDGR----- 603

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
                                      H   +Q +T      +SDP+   I         
Sbjct: 604 --------------------------VHTHFNQTVTTTGRLSSSDPNLQNIPVRTDFGRR 637

Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R C +   EG   V AD + IE R+LA ++G++  + AF +G D +  T AR F+V   
Sbjct: 638 IRECFVPLHEGDVFVSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVD 697

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT   R+  K +   + Y   A     +A +  +       ++        + +A    
Sbjct: 698 EVTPQLRSRAKAVNFGIVYGQQAF---GLAQSLDIGFKEAQDMID------RYFEAYPGV 748

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
           R   +   E A +  +  T   R                                     
Sbjct: 749 RSYLDKTVEDAKQTGYAVTMFGR------------------------------------- 771

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           +R +P + M              R+ V R  G  R+ +N   +    +     KL  N V
Sbjct: 772 KRHIPELKM--------------RNAVQRGFGE-RTAMNHPMQGSAADII---KLAMNEV 813

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL 661
           Q   R ++ +G  +       ++L VHDE+    P  + E  + M+  +M++       +
Sbjct: 814 Q---RRLIEDGFES------QLMLQVHDELDLSVPADELERLSDMVREVMSTIVE--LKV 862

Query: 662 PLKAE 666
           PL  +
Sbjct: 863 PLLVD 867


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/604 (17%), Positives = 204/604 (33%), Gaps = 89/604 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL----KEALENTD 65
           D     +        ++ F+F  D          H        + + L      +L N  
Sbjct: 328 DTETTNLD--VLCAKIVGFSFSLDGINAYYAPIAHSYLGVPEQISKELALEFINSLFNAK 385

Query: 66  VTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122
           V I  HN  ++  +L   FN      H    +++LA    + +P  L  +    +     
Sbjct: 386 VVI-GHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWLYQSDMPCNLDDL--MARYFKHT 442

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
           M   K++I    KGE    L   N             Y   D     ++F ++  L  K 
Sbjct: 443 MIAFKDIIK---KGENFSQLPIEN----------AFTYACEDAAACYQLFFKINSLLPKS 489

Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E         +   G  +++     L   +  +   L QE+ +L      + 
Sbjct: 490 LQEVANNVEFPFIQCLVNMELSGTKINIKYFKNLKSEMTEKLQALSQEIYTLA-NKRFNL 548

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF E  L     T++       VL+S +   P   +V   R    +     
Sbjct: 549 NSPQQLSIVLFEELNLQSGKKTKSGLSTNSSVLNSLRDSHPIIPKVLEYR-ELFKLYSTY 607

Query: 291 LNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           +  L+E  + D   ++  +    G + TGR S      QN+P  ++              
Sbjct: 608 IEPLIELASQDPAHKVYTSFMQTG-TSTGRLSSKNPNLQNIPVKTQQ------------- 653

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                          +R   IA EG  L+  D + IE R+LA  + +   ++AF    D+
Sbjct: 654 ------------GRRIREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSAMIEAFHKEADI 701

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           ++ T  + F     ++ +++R++ K +   L Y  GA   +K++ T  +N       ++ 
Sbjct: 702 HLETAKKIFG---EELAQEKRSVAKSINFGLIYGMGA---RKLSETLQINHQEAKSYIQ- 754

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
            +  + +   +NF +  +E      +++ +  T   R++K   +      ++     +  
Sbjct: 755 -NYFQSFPTVKNFLKEQEEFI----LKNGYSLTLLGRMRKFSFENIQEFQKV--AFLREG 807

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
              I  G A    K   + +   K +   L   L     L++    N          Q+ 
Sbjct: 808 INAIFQGSAADIIKLAMIQITQEKLESKLL---LQMHDELIFEAPKNIAETEAKKIAQIM 864

Query: 589 REYT 592
              T
Sbjct: 865 ESIT 868


>gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 838

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 88/527 (16%), Positives = 169/527 (32%), Gaps = 135/527 (25%)

Query: 168 TREIFKRL-EPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTK 217
             E++++L + L  KE E  Y D  +          + G  V++    TL + + +E  K
Sbjct: 420 MFELYEKLNKELKEKELENLYFDIEMPLIEVLFDMEETGIKVNIEKLETLTKHISMELDK 479

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           + +++ ++  G   +    ++L   L+   GL      +      +   ++L  Q     
Sbjct: 480 IKEKIYTIA-GTEFNINSPKQLAEVLYDRLGLKTRKRGKKARSTEMEVLEELAIQHELP- 537

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ--NLPRPSRS 335
                                         + +   ++    +G + P +    P   R 
Sbjct: 538 ---------------------------HEVINYRTLNKL--LTGYLIPLRDYINPETKRI 568

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H +  Q +      ++S+P+   I      ++ +R   I   G   + AD + IE R+LA
Sbjct: 569 HTKWSQTVAGTGRIVSSEPNLQNIPVKGEWAEFLREVFIPENGYMFLSADYSQIELRLLA 628

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            M+ +   +KAF  G+D++  T +  F++    VT + R I K +   + Y        +
Sbjct: 629 HMSEDPALIKAFLDGKDIHTATASEIFSIPENAVTDEHRRIAKTVNFGISYGISPFGLSE 688

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                              S    +E AE         +P   +   FI         ++
Sbjct: 689 -------------------SIKIPYEKAEELIELYFLRYP---MVRKFIEETI-----SF 721

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            QK+  V  L+                    + R +P +    +  N  L + S R    
Sbjct: 722 AQKNGYVRTLF-------------------GRIRPLPEI----NSPNQFLRMQSERM--- 755

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624
                                          VQ  + DI+   M+         K    I
Sbjct: 756 --------------------------AVNARVQGTAADIIKIAMIRIYNRLKKEKLNAKI 789

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
           +L +HDEIV E         S +         ++  +PL+   +   
Sbjct: 790 ILQIHDEIVLEVEQKVIEKVSEIVQ--NEMKDFSLSVPLEVNVFSGN 834


>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
 gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
          Length = 950

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 73/498 (14%), Positives = 161/498 (32%), Gaps = 70/498 (14%)

Query: 33  FAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
            AFG  D         +D             ++    LE+       +++ +    +K  
Sbjct: 392 VAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKY----MKHV 447

Query: 84  F-NLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           F N+ I +      ++L         +      A      ++   +EL+ +  K  +   
Sbjct: 448 FANVGINLAGVSDDVMLESYVLEAHRSHTIEKLAANWLKYELRGEEELLGKGAKKLSFSQ 507

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQ 190
           +          +     E+    V +   + +  +                E  L  +  
Sbjct: 508 V----------SVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVLF 557

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  +D  L       ++ +  +L+++   +  G        ++L   LF + G+ 
Sbjct: 558 KMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVA-GENFKLSSPKQLGEILFDKMGVV 616

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           LE        + +S N   + + +         ++ A                    L++
Sbjct: 617 LEGAKPK---KTISGNYSTSEEVLSELAENYPLAKIA--------------------LEY 653

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              ++         P    P+  R H   +Q +       +++P+   I         VR
Sbjct: 654 RTITKLVTTYTEKLPKMVDPKDGRVHTTFEQAVAVTGRLSSTNPNLQNIPIRTEEGRKVR 713

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              I++ G KL+ AD + IE R++A ++ ++  ++AF+  ED++  T A  F     +VT
Sbjct: 714 EAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVT 773

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R I KV+   L Y         +A   G+  +   + +    A   +    ++    
Sbjct: 774 PNDRRIAKVINFGLMYGMSPF---GLAKNLGIGRDEAKNYINKFFAR--FPGVHDYMERT 828

Query: 486 QENHPEHAIEDLFIGTAC 503
           +         +   G   
Sbjct: 829 RALADRQGYVETTFGRRL 846


>gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 899

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 104/642 (16%), Positives = 185/642 (28%), Gaps = 160/642 (24%)

Query: 44  LWDCV----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
           + D       D    + L + L + D   V  ++      L+      I +   +    L
Sbjct: 361 VVDMTLLLAQDE---EALDQLLSDPDHPKVVADAKGSWHALR---GRGIGLDGVVADPAL 414

Query: 100 ARSNGLP--SALKAVGEA---LKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPNHR 151
           A     P   +      A   L L  + + + +         +T    E L D   P  R
Sbjct: 415 AAYLCRPEQRSYDVATLAERWLGLDLESLAQAE--------PQTAFDLESLADGTPP--R 464

Query: 152 EAWRLFGEYCKGDVTVT-----REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                                       +   +  E  +      + D G  VD      
Sbjct: 465 TLLASARRAACLLPLQEVLGEQMAQRGAVTLYTELEMPVAACLAQMEDAGIAVD-DSVLA 523

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
             ++    R     E      G   +    ++L+  +F E  +     T+        + 
Sbjct: 524 AREVELDARVTHAAEAAFAAAGHELNLSSPKQLQAVIFDELKMPKTRRTKRGYTTDAEAL 583

Query: 267 KKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
             L  +    F   +   R A+     +  L +A+ +DGR+  T                
Sbjct: 584 AALYAKTGHPFLEHLLEHRDAIKLRQTVEGLRKAVLADGRIHTT---------------- 627

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKK-LV 377
                            Q +       ++DP+   I +       +R      +G++ L+
Sbjct: 628 ---------------FQQTVAATGRLSSTDPNLQNIPARTEEGMRIREAFTVGQGQECLL 672

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G+Q  + AF +GEDL+    A    +  A VT +QR+  K M  
Sbjct: 673 TADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRYVAAMVHGIDVADVTAEQRSHVKAMSY 732

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            L Y         +A   G++    + L                                
Sbjct: 733 GLAYGLSTY---GLARQLGIDNAEASALRD------------------------------ 759

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                            +R   + + L     Q   +G       RR             
Sbjct: 760 --------------AYFARFGAVHDYLESVVAQARRDGWTQTMFGRRRY----------- 794

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
               LP                L +  RQ  RE      L   I Q  + DI+ + M++ 
Sbjct: 795 ----LP---------------DLTSDNRQ-RREMAERAALNAPI-QGSAADIVKKAMIDV 833

Query: 618 TKAGY------DIVLTVHDEIVCE-TPDTDEFNASMLYHLMT 652
             A         ++L +HDE++ E  P   E    ++   M+
Sbjct: 834 ADALAESALASRVLLQIHDELLLEIAPGEAEAVEELVRARMS 875


>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
 gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
          Length = 875

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 89/565 (15%), Positives = 184/565 (32%), Gaps = 68/565 (12%)

Query: 35  FGFDDHPV-------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNL 86
           +  D+ PV       +++    +  + +  KE  E+ D+        F+    +      
Sbjct: 328 YYVDNEPVIFAIYTDKVY-ITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRY 382

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            I I      +V+      PS  +        K+     +  +++  +    +T     +
Sbjct: 383 GIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           +   N+   + +F      +     E    +      E  L  +   +   G CV     
Sbjct: 443 KEIDNYVVKYMMFTNKL-YEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             + ++ + E   ++  +E L  G   +    ++L   LF +  L +    +T   T Q 
Sbjct: 502 VEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL +          +   R    +     ++ +V+ +  DG++                 
Sbjct: 561 VLEALSGRHEIIDYILRYRTIT-KLKTTYIDGMVDLIKEDGKI----------------- 602

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
                         H    Q I       +++P+   I         +R   + SEG  L
Sbjct: 603 --------------HTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNML 648

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RVLA +A ++  + AF+ G D++  T +  F V   +VT  QR+  K + 
Sbjct: 649 LDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVN 708

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y  G  +         +        +      E + D     +   E+      E 
Sbjct: 709 FGIVYGIGDYSLS---KDLHITRKEAKEYI------ENYLDTYKGIKQYMEDIVAIGKEK 759

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R ++   +  S+   + +   +    T   G A    K   V       ++ 
Sbjct: 760 GYVETIMNR-RRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEK 818

Query: 557 NLI-LMLPSGRSLVYRDVGNNRSYL 580
               L+L     L+     + R  +
Sbjct: 819 LKAKLILQVHDELIVDCPKDEREKV 843


>gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
 gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
          Length = 811

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 178/549 (32%), Gaps = 80/549 (14%)

Query: 9   ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           E  S  D       G   + ED    L    + +      D ++      +L+EAL    
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSNVSLLQEALFKKA 366

Query: 66  VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123
           ++       F+R+ VL   FN+D+P         LA+     +    V    +L +   +
Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EP 177
           +    +  +  K         R  P          +  K  V     I ++L      E 
Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +  RG  V     + +          L QE+  L  G   +    +
Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSPK 534

Query: 238 KLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           +L   LF   GL +E    T+T     +   ++L P +  V                   
Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK----------------- 577

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                       L++   ++             L    + H    Q +T      +SDP+
Sbjct: 578 -----------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPN 625

Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
              I         +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D++
Sbjct: 626 LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIH 685

Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +T  R F +  P  VT + R   K +   + Y              G+        + T
Sbjct: 686 TSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYIDT 742

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               E +   +N      E     A +  ++ T   R +++    +SR   +     +  
Sbjct: 743 --YFERYPGIKN----YMETVVREAKDKGYVETLFHR-RRSLPDINSRNFNIRQFAERTA 795

Query: 529 EQTIENGKA 537
             +   G A
Sbjct: 796 INSPIQGSA 804


>gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 913

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 95/515 (18%), Positives = 155/515 (30%), Gaps = 129/515 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                  L   +  E  +      + D G  VD A+       +D  R     E      
Sbjct: 500 QMADRDALGLFADLEMPVAATLTVMEDVGIAVDDAVLAVRETELDA-RVTHAAEGAYAAA 558

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    ++L+  LF E  +     T+T       +   L  +    F   +   R A
Sbjct: 559 GRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTDAEALAGLYAKTSHPFLENLLEHRDA 618

Query: 288 VL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     +  L +A+ SDGR+  T                                 Q I 
Sbjct: 619 IKLRQTVEGLRKAIQSDGRIHTT-------------------------------FQQTIA 647

Query: 345 HLPTSITSDPDPLQIISD-----CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWK 398
                 ++DP+   I +       +R      EG + L+ AD + IE R++A ++G+Q  
Sbjct: 648 ATGRLSSTDPNLQNIPARNEEGMRIRQAFTVGEGYECLMTADYSQIEMRIMAHLSGDQAL 707

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF +GEDL+    A    +    VT  QR+  K M   L Y         +A   G+ 
Sbjct: 708 IEAFRSGEDLHRYVAALVHGIDVDDVTAQQRSHVKAMSYGLAYGLSTF---GLARQLGIG 764

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A L                                                 +R  
Sbjct: 765 NAEAADLRN--------------------------------------------AYFARFG 780

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            + + L    EQ   +G       RR                 LP               
Sbjct: 781 RVHDYLESVVEQARRDGYTQTMFGRRRY---------------LP--------------- 810

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
            L +  RQ  RE      L   I Q  + DI+ + M++  +A         ++L +HDE+
Sbjct: 811 DLTSDNRQ-RREMAERAALNAPI-QGSAADIVKKAMIDVDRALSEQGLSSRVLLQIHDEL 868

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E    + E   ++L   M         +PL   
Sbjct: 869 LVEVASAEVEAVETLLKEQMGGAAE--LSVPLDVA 901


>gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
          Length = 885

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 139/478 (29%), Gaps = 127/478 (26%)

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  VD+              T+ +    ++           ++L+  LF   
Sbjct: 491 ILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVLFETL 550

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNSDGRL 304
           GL      +T         + L       F N + A R        L  L++A+  DGR+
Sbjct: 551 GLPKTKKIKTGYSTAAKEIETLAANHPHEFLNHLLAHREYQKMKTTLEGLIKAVGDDGRI 610

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
             T                                 Q +T      ++DP+   I     
Sbjct: 611 HTT-------------------------------FQQTMTSTGRLSSTDPNLQNIPIRTP 639

Query: 361 -SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +RS          L+ AD + IE RV+A ++ +   + A+  GEDL+    A+ F+
Sbjct: 640 AGKKIRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNGEDLHNYVGAKVFD 699

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V P+ VT + R   K +   L Y   A    +                            
Sbjct: 700 VPPSGVTPELRRKVKALSYGLVYGLSAFGLSQQ--------------------------- 732

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KA 537
                               +       K+       R   + + L     Q  ++G  A
Sbjct: 733 --------------------LNIPAGEAKQIMENYFHRFGGVKHYLDTVVTQARKDGYTA 772

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
            +  +RR +P +                                T+T + TRE      L
Sbjct: 773 TLFDRRRYLPEL--------------------------------TSTNRATRENAERAAL 800

Query: 598 TENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
              I Q  + DI+   M+        T A   ++L VHDE+V E    +      L  
Sbjct: 801 NAPI-QGTAADIIKIAMLRIHHELKKTNAKSRVLLQVHDELVVEIAPGELTTVKKLIE 857


>gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
 gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
          Length = 886

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 90/511 (17%), Positives = 173/511 (33%), Gaps = 134/511 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +   G  V+ +    L     V+  +L+ ++     G   +    ++L  
Sbjct: 488 EIPTARVLAKMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYEQA-GERFNLNSPKQLGH 546

Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+T       VL   K  +P   ++ + R  A   +   +  L++ +
Sbjct: 547 ILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 605

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG                               R H    Q +T      + DP+   
Sbjct: 606 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 634

Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           I         +R   + SE    +   D + +E RVLA ++G+    +AF+TG D++  T
Sbjct: 635 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHT 694

Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + F++  P QVT   R   K +   + Y         ++   G++             
Sbjct: 695 AMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRK----------- 740

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                 A+ F     E +P                            ++ + +++A ++ 
Sbjct: 741 -----RAKEFIDNYFEQYP----------------------------QIKDYMNKAVQEA 767

Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            + G A  I  +RR +P ++ KK          + R+         R+ +N+        
Sbjct: 768 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 805

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N  K          +V+ VHDE++ + P  +    
Sbjct: 806 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 854

Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
             +   +M S       +PL A+ G+    Y
Sbjct: 855 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 883


>gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
 gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
          Length = 900

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 93/537 (17%), Positives = 173/537 (32%), Gaps = 142/537 (26%)

Query: 155 RLFGEYCKGDVTVTREIFK----RLEPLS------SKEQELWYLDQTINDRGYCVDVALA 204
           +L  + C   + +   ++K    +L+ +         E  L  +   +   G  +D   +
Sbjct: 470 QLQRQLCAQKIQLIDALWKDSEPKLKEMEIVSLFYDVEMPLAAVLYKMEKEGIRID---S 526

Query: 205 HTLNQIVDVERTKLDQELESL--TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
            TL+ I    + +LD   +++    G   +    ++L   LF + GL       +T   V
Sbjct: 527 QTLDDIARQTQARLDALTDAIYAAAGETFNINSPKQLGEVLFDKLGLPASGKKRSTSADV 586

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L     + P    +   R +  +        L + ++ DGR                   
Sbjct: 587 LEKLLGVHPIIADLLEFR-KYQKLYSTYAEGLKKYIHPDGR------------------- 626

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
                        H   +Q  T      +++P+   I      S  VR   + SEG  LV
Sbjct: 627 ------------IHTIYNQCATQTGRLSSTEPNLQNISVRDEESREVRKAFLPSEGNVLV 674

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            +D + IE R+LA MA EQ  L AF    D++  T +  F +   QV    R   K +  
Sbjct: 675 ASDYSQIELRMLAHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKAVNF 734

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y        +      ++       ++                              
Sbjct: 735 GIVYGISDFGLSQ---QLDISRAQAKEFIE------------------------------ 761

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKN 556
                       + Q +  +S+    + Q      E+G  A +  +RR+VP ++   DKN
Sbjct: 762 -----------RYLQSYPNISK---YMDQVISFCQEHGYTATMLGRRREVPEIH---DKN 804

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
            +                  R+ +N                    +Q  + D++   M+ 
Sbjct: 805 YMTREF------------GKRAAMNAP------------------IQGSAADLIKLAMIR 834

Query: 617 ATKA------GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
             KA         ++L VHDE++ +  P   +   +++   M         +PL AE
Sbjct: 835 IDKAISEKGLQSKMILQVHDELIFDALPSELDALCAIIQEGMEHAME--LKVPLVAE 889


>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
 gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
          Length = 924

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 93/533 (17%), Positives = 159/533 (29%), Gaps = 79/533 (14%)

Query: 62  ENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            +  V  V HN  F+  VL     +   P+     T+VL+            G       
Sbjct: 398 RDPGVLKVGHNLKFDLHVLANAGLSDVAPVD---DTMVLSYVLD--------GTLHGHGM 446

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            ++  G  L  R    E             +        Y   D  VT  ++  L     
Sbjct: 447 DEL-AGLHLGRRTITFEEVCGKGKGQITFDQVPLDKAVAYAAEDADVTLRLYLLLRDRLL 505

Query: 181 KEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           KE            +  +   +   G  VD      L+         L+ ++ +L  G  
Sbjct: 506 KEHMVRVHETLDRPMVRILTDMEAAGVRVDALRLKALSGDFAKRMGDLEDQIHALA-GHA 564

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKL-TPQAIQVFNNRMRAS 284
            +    ++L   LF E  L     +  T       +VL            +V + R  A 
Sbjct: 565 FNVASPKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQVLDQLAAEGHDLPARVLDWRQYAK 624

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                  + LV  ++                               R  R H      +T
Sbjct: 625 LKGTYT-DALVAEIDE------------------------------RTGRVHTTYGLTVT 653

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                 ++DP+   I         +R   IA+ G  L+ AD + IE R++A +AG     
Sbjct: 654 ATGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQIELRLVAHVAGITALR 713

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T ++ F V    +    R   K +   + Y   A     +A   G+  
Sbjct: 714 QAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISA---HGLAQQLGVGR 770

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER--VKKAWRQKHSRV 517
              A  +    A           R   E   E A    ++ T   R       + K+   
Sbjct: 771 PEAAAFITAYFARFPE------IRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAA 824

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                   QA    I+ G A I ++        +++      ++L     L++
Sbjct: 825 RAFAE--RQAINAPIQGGAADIIKRAMIALPPALEQAGLATRMLLQVHDELIF 875


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 89/520 (17%), Positives = 162/520 (31%), Gaps = 129/520 (24%)

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             D  ++R+  +    ++  E  L  +   +   G   D      L      E     Q 
Sbjct: 480 AIDAELSRDGEQSARLMAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQA 539

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             ++  G   +    ++L+  LF E  L      +T       + + L  Q      + +
Sbjct: 540 AYAVI-GREFNLGSPKQLQEILFGELNLPKTKKIKTGYTTDADALQWLYAQTEHPLLHHL 598

Query: 282 RASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              R        ++ L+++++ DGR+  T                               
Sbjct: 599 LRHRDVARLKSTVDGLLKSVSDDGRIHTT------------------------------- 627

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWM 392
            +Q +       +++P+   I         +R   +  EG + L+ AD + IE R++A +
Sbjct: 628 FNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHL 687

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  ++AF +G D +  T +  F VA A+VT DQR   K M   L Y   A    +  
Sbjct: 688 SGDEALIEAFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNYGLAYGLSAFGLSQ-- 745

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+       L++   A                                         
Sbjct: 746 -QLGITAEEARGLMEVYFAG---------------------------------------- 764

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  + + L +   +  ++G       RR                 LP         
Sbjct: 765 ----FGGVRDYLQEVVARARQDGYTSTILGRRRY---------------LP--------- 796

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVL 626
                  L +  RQ  RE      L   I Q  + DI+   M++   A         ++L
Sbjct: 797 ------DLVSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLHVDTALRDAGLRSRMLL 848

Query: 627 TVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
            VHDE+V E    +      L    M    ++   +PL+ 
Sbjct: 849 QVHDELVFEVAPGERATLEELVRREMGG--AYPLSVPLEV 886


>gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 885

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 93/545 (17%), Positives = 190/545 (34%), Gaps = 54/545 (9%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
           EDV  I  A    D  V+     ++ +    LK+ +E+  V  + ++   +  +L    +
Sbjct: 335 EDVKPIYLAVKVKDSEVKFI--SYEEIDFDFLKKIMEDEKVEKLGYSLKEDIIIL---MD 389

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLY 143
           L I I  +   + +A      +        + ++  K    + ++L+ +  K +T+  L 
Sbjct: 390 LGIDIKNYSHDVEIAEYLLNSTQSDYDINKISMAYFKNGYLDLEDLLGKGAKKKTYADL- 448

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVA 202
           D++      A+ L   Y   D+   +   + +  L    E  L  +  ++   G   D A
Sbjct: 449 DKDDLFKYFAFVLNTIYRLEDLQKEKIDEEEMTSLYQDMELPLVEVLASMEYVGINTDEA 508

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
           +   +++ +  +   L++E+     G   +    ++L   LF +    +   T+T     
Sbjct: 509 VLDEIDKQIIEKLKTLEEEIYDEA-GEKFNINSPKQLGVILFDKMDFPVIKKTKTGYSTS 567

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
               +                      KL    E ++        L +   S+       
Sbjct: 568 ADVLE----------------------KLRGKGEIIDK------ILDYRKFSKLKSTYID 599

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
                   +  R H    Q +T      ++DP+   I         +R   +ASEG  LV
Sbjct: 600 GLKAVINKKTKRIHSRFMQTVTATGRISSTDPNLQNIPIKTEEGRLIRKAFLASEGGVLV 659

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA ++ ++  L AF+ G D++  T +  F+V   +V   QR   K +  
Sbjct: 660 DADYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDRQRYEAKAVNF 719

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y        +      +        +                +       ++  +  
Sbjct: 720 GIVYGISDYGLSQ---NLNIPRKAAKEYIDNYLGHFV------GIKDYMAEEIKNGKDKG 770

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
           ++ T  +R ++   + +++   + +   +    T   G A    K   V  VY +  K N
Sbjct: 771 YVETIFKR-RRYIPELNAKNFNIRSFGERIALNTPIQGSAADIIKIAMVK-VYNELKKRN 828

Query: 558 LILML 562
           L   L
Sbjct: 829 LKSKL 833


>gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
 gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
          Length = 931

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 90/501 (17%), Positives = 154/501 (30%), Gaps = 121/501 (24%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L  +  ++   G  VD A     +  +  +   L+  +  L  G   +     +
Sbjct: 530 TKIEMPLVRVLASMERAGMYVDPARLAAQSDELVGQIQALEARIRELAGGEEFNLSSPMQ 589

Query: 239 LKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           L   LF   GL    L +T      T  +VL    K       +   R +    +   L+
Sbjct: 590 LSRILFDTLGLPTAGLKKTQRGYYSTNAKVLEDLAKNHEIVRLILEFREKTKIKSTY-LD 648

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           TL      DGR+  T                                +Q IT      +S
Sbjct: 649 TLGPLRRHDGRVHTT-------------------------------YNQTITATGRLSSS 677

Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
            P+   I     +   V+      EG   V  D + IE R+LA ++G++  + AF  GED
Sbjct: 678 SPNLQNIPTRSELGHAVKRAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVSAFNEGED 737

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            +  T AR F V   +VT   R+  K +   + Y   A    +   T  + +     ++ 
Sbjct: 738 FHAETAARVFGVPVDEVTPQLRSRAKAVNFGIVYGQQAYGLSQ---TLDIPMAEAREMID 794

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                  +  A    R   +     A +  +  T                          
Sbjct: 795 A------YFRAYPGVRTYLDETVTFAKQTGYAET-------------------------- 822

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                      +  +RR +P            L +P+ R          R+ +N   +  
Sbjct: 823 -----------MYGRRRPIPE-----------LRIPAQRMF------GERTAMNHPMQ-- 852

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SM 646
                  G   + I  A+   +     + A      ++L VHDE+  E P  +     +M
Sbjct: 853 -------GSAADIIKIAM---VHVAERLRAEGFTAKMILQVHDELDFECPVGEVDRLIAM 902

Query: 647 LYHLMTSNPSWAKGLPLKAEG 667
           +   M         +PL A+ 
Sbjct: 903 VREEMEGVAE--LRVPLIADA 921


>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 871

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 90/631 (14%), Positives = 183/631 (29%), Gaps = 153/631 (24%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
           +L    +      +L+  +E+  V  V H+S    T L      DI I  +     +A  
Sbjct: 356 KLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY---DIDIQGFDFDTAIAAY 412

Query: 103 N--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                 +  +      +   + ++     +   C        Y +      +        
Sbjct: 413 LIDSSKANYEVFDLINRFLEKDIKSDSNDLKAIC------SSYLKKLYEKLKEMLH---- 462

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            K D     E++ ++      E  L Y+  ++   G+ ++      L      +  K ++
Sbjct: 463 -KED---MDELYYKV------EHPLIYVLSSMESIGFKINQDKLEELRVKFKEQIEKTEK 512

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277
           E+  L      +    ++L   LF +  L +   T+T     Q VL       P   +V 
Sbjct: 513 EIYELAD-EEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLIDKHPIITKVM 571

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R     ++   +  L   ++ DG +                                 
Sbjct: 572 YYRQITKINSTY-VEGLKNVIDIDGCIHS------------------------------- 599

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAW 391
             +Q +T      +++P+   I         +R   I  +    L+  D + IE RVLA 
Sbjct: 600 NFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAH 659

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A ++  + AFE   D++  T +  F V   +VT   R+  K +   + Y     +    
Sbjct: 660 VADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSL--- 716

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A    +     A  +                                             
Sbjct: 717 AQDLKITKKEAAEYMAIYF----------------------------------------- 735

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +++ ++ E  N + +  ++  +     I  +RR +P +                      
Sbjct: 736 ERYPKIKEYLNYVSEYAKE--KGYVLTILNRRRFIPEIKSSNK---------------IV 778

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625
                R  +N                    +Q  + DI+   M+N            +++
Sbjct: 779 KALGERLAMNAP------------------IQGSAADIIKLAMVNVYNKLREKNLNSELI 820

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           L VHDE++      +      L    M    
Sbjct: 821 LQVHDELILNVKKDEFDIVKQLVIEEMEKAI 851


>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
 gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
          Length = 908

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 107/659 (16%), Positives = 183/659 (27%), Gaps = 145/659 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A          +D        +    A L +       H +        A     + + 
Sbjct: 356 VAVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALHAAK---EASHALAGRGLDLE 412

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                  LA     P        A  L    +   +  +         +   D       
Sbjct: 413 GVTFDTELAAYLCQPDR-----RAYDLPDLAIGYLRRELGGDDGSSAGQGALDLEVDGAD 467

Query: 152 EAWRLFGEYCKG--DVTV---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
           E  R           V V             LS  E  L  +   +   G  +D A    
Sbjct: 468 EGRRAAVRAAAVRDLVDVLGGEVADRGATTLLSDLELPLQAVLARLERTGIAIDHAYLSG 527

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L +  D +      +  ++  G   +    ++L+  LF +  +      +T      ++ 
Sbjct: 528 LEREFDGQVQGAAADAYAVI-GREVNLGSPKQLQEVLFDQLRMPKTKRIKTGYTTDANAL 586

Query: 267 KKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
             L  +    F   + A R A+     +  L+ ++  DGR+R T Q              
Sbjct: 587 TDLFARTGHPFLEHLLAHRDAIRLRQTVEGLLRSVADDGRIRTTFQ-------------- 632

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLV 377
                            Q I       ++DP+   I         +R   +   G   L+
Sbjct: 633 -----------------QTIAATGRLSSADPNLQNIPIRTDAGRQIRRAFVVGPGYATLL 675

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  + AF +GEDL+    +R F V   +VT   R+  K M  
Sbjct: 676 TADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAMSY 735

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            L Y   +    +      + ++  A L+                               
Sbjct: 736 GLAYGLSSYGLSQ---QLAIEVSEAAALMT------------------------------ 762

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                             R   + + L    +Q    G       RR             
Sbjct: 763 --------------DYFERFGGVRDYLTGVVDQARATGYTATVLGRRRY----------- 797

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-- 615
               LP                L +  RQ  RE      L   I Q  + D++   M+  
Sbjct: 798 ----LP---------------DLTSDNRQ-RREAAERMALNAPI-QGSAADLIKVAMLGV 836

Query: 616 --NATKAGYD--IVLTVHDEIVCETPDTDEFNASMLYH-LMTSN----PSWAKGLPLKA 665
               T+ G    ++L VHDE+V E  + +      L    M +     P     +PL  
Sbjct: 837 DGELTRRGLRSRMLLQVHDELVLEVAEGEREEVEELVRTQMAAAGSGLPDGPLDVPLDV 895


>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
 gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
          Length = 891

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 73/498 (14%), Positives = 161/498 (32%), Gaps = 70/498 (14%)

Query: 33  FAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
            AFG  D         +D             ++    LE+       +++ +    +K  
Sbjct: 333 VAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKY----MKHV 388

Query: 84  F-NLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           F N+ I +      ++L         +      A      ++   +EL+ +  K  +   
Sbjct: 389 FANVGINLAGVSDDVMLESYVLEAHRSHTIEKLAANWLKYELRGEEELLGKGAKKLSFSQ 448

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQ 190
           +          +     E+    V +   + +  +                E  L  +  
Sbjct: 449 V----------SVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVLF 498

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  +D  L       ++ +  +L+++   +  G        ++L   LF + G+ 
Sbjct: 499 KMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVA-GENFKLSSPKQLGEILFDKMGVV 557

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           LE        + +S N   + + +         ++ A                    L++
Sbjct: 558 LEGAKPK---KTISGNYSTSEEVLSELAENYPLAKIA--------------------LEY 594

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
              ++         P    P+  R H   +Q +       +++P+   I         VR
Sbjct: 595 RTITKLVTTYTEKLPKMVDPKDGRVHTTFEQAVAVTGRLSSTNPNLQNIPIRTEEGRKVR 654

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              I++ G KL+ AD + IE R++A ++ ++  ++AF+  ED++  T A  F     +VT
Sbjct: 655 EAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVT 714

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R I KV+   L Y         +A   G+  +   + +    A   +    ++    
Sbjct: 715 PNDRRIAKVINFGLMYGMSPF---GLAKNLGIGRDEAKNYINKFFAR--FPGVHDYMERT 769

Query: 486 QENHPEHAIEDLFIGTAC 503
           +         +   G   
Sbjct: 770 RALADRQGYVETTFGRRL 787


>gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084]
 gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084]
          Length = 922

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 146/442 (33%), Gaps = 53/442 (11%)

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D      +   L     +          E  L  +   +   G   D       ++ 
Sbjct: 492 AALDAVGAWALCPLLARRLEEDGSKGLFCDLEMPLLRVLLQMERTGLHADAGRLAEQSRE 551

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           +  E   +   +++       +    ++L   LF   GL    L + T +   S+N K  
Sbjct: 552 LGSEIDCMVATIKADAD-EDFNMDSPQQLSHVLFDVWGLPTFGL-KRTKKGFYSTNAK-- 607

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                                 TL +    DGR+R  L +   ++         P  ++ 
Sbjct: 608 ----------------------TLEDLAQQDGRVRMILDYRERAKIKSTYLDALPA-DIR 644

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385
           R  R H  L+Q +       +S P+   I     +   VR+     EG   +  D + IE
Sbjct: 645 RDGRIHTTLNQTVAATGRLSSSAPNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIE 704

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA ++ +   + AF +G D +  T AR F V   +VT   R+  K +   + Y   A
Sbjct: 705 LRLLAHLSADGHLVGAFNSGADFHAATAARVFGVPVEEVTPQLRSRAKAVNFGIVYGQQA 764

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +AS+  +       ++        + +A    R   +   + A +  +  T   R
Sbjct: 765 F---GLASSLRIGRAEAQEMID------RYFEAYPGVRAYLDQSVDFARKRGYAVTMYGR 815

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPS 564
            K+  R  ++R  +L +   +        G A    K   V +    + +     L+L  
Sbjct: 816 -KRHIRDINARNFQLRSFAERTAMNHPMQGTAADIIKLAMVRVAERLRQEGLRSKLVLQI 874

Query: 565 GRSLVYRDVGNNRSYLNTTTRQ 586
              L +    +    L+   ++
Sbjct: 875 HDELDFEVPKDEIEVLSKLVKE 896


>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
 gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
          Length = 871

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 90/631 (14%), Positives = 183/631 (29%), Gaps = 153/631 (24%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
           +L    +      +L+  +E+  V  V H+S    T L      DI I  +     +A  
Sbjct: 356 KLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY---DIDIQGFDFDTAIAAY 412

Query: 103 N--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                 +  +      +   + ++     +   C        Y +      +        
Sbjct: 413 LIDSSKANYEVFDLINRFLEKDIKSDSNDLKAIC------SSYLKKLYEKLKEMLH---- 462

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            K D     E++ ++      E  L Y+  ++   G+ ++      L      +  K ++
Sbjct: 463 -KED---MDELYYKV------EHPLIYVLSSMESIGFKINKDKLEELRVKFKEQIEKTEK 512

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277
           E+  L      +    ++L   LF +  L +   T+T     Q VL       P   +V 
Sbjct: 513 EIYELAD-EEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLIDKHPIITKVM 571

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R     ++   +  L   ++ DG +                                 
Sbjct: 572 YYRQITKINSTY-VEGLKNVIDIDGCIHS------------------------------- 599

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAW 391
             +Q +T      +++P+   I         +R   I  +    L+  D + IE RVLA 
Sbjct: 600 NFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAH 659

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A ++  + AFE   D++  T +  F V   +VT   R+  K +   + Y     +    
Sbjct: 660 VADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSL--- 716

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A    +     A  +                                             
Sbjct: 717 AQDLKITKKEAAEYMAIYF----------------------------------------- 735

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +++ ++ E  N + +  ++  +     I  +RR +P +                      
Sbjct: 736 ERYPKIKEYLNYVSEYAKE--KGYVLTILNRRRFIPEIKSSNK---------------IV 778

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625
                R  +N                    +Q  + DI+   M+N            +++
Sbjct: 779 KALGERLAMNAP------------------IQGSAADIIKLAMVNVYNKLREKNLNSELI 820

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           L VHDE++      +      L    M    
Sbjct: 821 LQVHDELILNVKKDEFDIVKQLVIEEMEKAI 851


>gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
          Length = 883

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/510 (14%), Positives = 152/510 (29%), Gaps = 130/510 (25%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +I  +L P+ +           +   G  ++ A      + +  +  +L   ++  +  
Sbjct: 481 HDIDNKLTPVLA----------AMEYEGVHINKAFFSEYEKELQTKLDELQASVDKFSKE 530

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            V +    +++   LF E  L +   T+T      S  + L  + +              
Sbjct: 531 PV-NLNSPKQVGVLLFEELELPVGKKTKTGYSTDSSVLEDLAAKGLSEVPAL-------- 581

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                              L++    +         P        + H   +Q +     
Sbjct: 582 ------------------ILEYREVGKILSTYVKAIPELLNEASGKIHTHFNQNVAATGR 623

Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             ++ P+   I     +   VR   IA  GK L+ AD + +E R+LA  + ++  + AF+
Sbjct: 624 LSSNHPNLQNIPIRSELGRRVRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFK 683

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G D++  T +    V   +V  + R+  K +   L Y   +     +A+   +      
Sbjct: 684 KGVDIHRRTASEIMGVPVEEVGSNDRSKAKAVNFGLMYGQSSF---GLAAALKIPRKEAK 740

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +                                                 R S +   
Sbjct: 741 EYIT--------------------------------------------NYFERFSSVKGY 756

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           L    E+  + G AI  + R+         ++                     R  +N+ 
Sbjct: 757 LDHLKEECEKTGYAITLKGRKRYLADIHSTNRTI--------------KANAERVAINSP 802

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637
                             +Q  + DI+   M+N  K          ++L VHDE++ E  
Sbjct: 803 ------------------IQGTAADIIKLAMINIQKVLDDKKLKSKMILQVHDELIFEVV 844

Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           +++ E   ++L   M    S    +PL  +
Sbjct: 845 ESELEEMKTILKDGMEKVVS--LSVPLDVD 872


>gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
 gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
          Length = 888

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 148/474 (31%), Gaps = 126/474 (26%)

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            I   G  VD      L         +  Q+  ++  G   +    ++L+  LF E G+ 
Sbjct: 498 EIEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVI-GKEINLGSPKQLQVVLFDELGMP 556

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGT 307
               T+T       + + L       F   + A R        ++ L++A+  DGR+  T
Sbjct: 557 KTKKTKTGYTTDADALQSLFESTQHPFLQHLLAHRDVTRLKTTVDGLLKAVADDGRIHTT 616

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
                                            Q I       ++DP+   I        
Sbjct: 617 -------------------------------FHQTIAATGRLSSTDPNLQNIPIRTDEGR 645

Query: 363 CVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   +   G  +L+ AD + IE R++A ++G++  ++AF +GEDL+    +++F+V  
Sbjct: 646 RIREGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPT 705

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT +QR   K M   L Y         +A    +                        
Sbjct: 706 GEVTAEQRRRVKAMSYGLAYGLSEY---GLAQQLRIPAAEA------------------- 743

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                    ++      SR   + + L    E+  + G      
Sbjct: 744 -------------------------REQMEAYFSRFGGVRDYLQSIVEEARKKGYTETIL 778

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            RR                 LP                LN+  RQ  RE      L   I
Sbjct: 779 GRRRY---------------LP---------------DLNSDNRQ-RREMAERMALNAPI 807

Query: 602 VQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            Q  + DI+   M+       A++    ++L VHDE+V E  D +      L  
Sbjct: 808 -QGSAADIIKVAMLGVFQALEASELTSRMLLQVHDELVLEIADGERAAVESLVR 860


>gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
 gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
          Length = 1022

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/514 (15%), Positives = 156/514 (30%), Gaps = 137/514 (26%)

Query: 170  EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E++++L      +  L  +   +   G  VD  L   ++  + V    L + + + + G 
Sbjct: 618  EVYEQL------DLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYA-SSGH 670

Query: 230  VSSSRCLEKLKTWLFLETGLHLE---DLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    ++L   LF +  L         +  +T Q +L    +       V   R    
Sbjct: 671  RFNINSPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLAQHHEVPAIVLEYRQL-- 728

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                          +         P        R H   +Q+ T
Sbjct: 729  -----------------------------QKLKSTYLDQLPSLTD-VNGRIHTTFNQVGT 758

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                  + +P+   I         +R+  IA+ G  L+ AD + IE R++A  + +   L
Sbjct: 759  ATGRLSSINPNLQNIPIRTAVGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLL 818

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
             A+ TG+D++  T A  F V  A + K+ RA  K +   + Y         +A+  G++ 
Sbjct: 819  DAYRTGKDIHTLTAAEVFEVDAATMDKETRARAKAVNFGIVYGISPF---GLAAQLGIDQ 875

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                  ++     + ++    F     E                                
Sbjct: 876  KVAKAYIE--RYFDRYKGVATFIEQTLETVRR---------------------------- 905

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                  QA +            + R +P +  +          P+ R          R+ 
Sbjct: 906  -----DQAVKTA--------FGRVRPIPDIQSRN---------PNQRGFA------ERTA 937

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
            +NT                    Q  + D++   M+    A         + L VHDE++
Sbjct: 938  VNTPL------------------QGTAADLIKIAMLRIDAAIRTRNLRSLMTLQVHDELL 979

Query: 634  CE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
             +  P+  +    ++   M S       +P+ AE
Sbjct: 980  FDVVPEEADEMQELVKTEMESAAE--FSVPIVAE 1011


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/630 (14%), Positives = 196/630 (31%), Gaps = 156/630 (24%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALK 117
           L N+   ++  N  F+  VLK        +       ++A     P    +L  +     
Sbjct: 409 LFNSQPKLIGQNYKFDYKVLKRH---GFNVISAYFDTMIAAYVIDPNTKVSLDFLAA--- 462

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                    K L+    K   +E +  ++         +   Y   D  +T  +F  L  
Sbjct: 463 ---------KYLMH---KNIKYEEIVPQHSTLKDIPLEIASNYAAEDADITFRLFNILRK 510

Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                     + + E     +   I + G  +D          ++ E   ++ E+   + 
Sbjct: 511 KLKEDNLESLMKNIEMPFSNVIIEIEENGIYLDSNYLTQYGHELEQELKTIENEVIQ-SI 569

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           G+  +    ++L T LF +  + +      ++T  +VL + K       ++ N R  A  
Sbjct: 570 GIEFNLNSSKQLHTILFEKLNIIVSKNVKQDSTDIKVLETIKDQHESIEKLINYRQLA-- 627

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                                        +               + ++ H    Q  T 
Sbjct: 628 -----------------------------KLKNTYTDNLIEFINEKTNKIHTNFMQTKTA 658

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                ++ P+   I         +R+    ++G   + AD + IE  +LA ++ ++  ++
Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIE 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF   +D+++ T ++ F V  A +T   R I K +   +              +  L++ 
Sbjct: 719 AFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGI-----IYRMSAFRLSQELSIK 773

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                          ++A+NF       + +      FI    + VK+            
Sbjct: 774 R--------------DEAQNFIDSYFNLYSKI---KTFIQNQIDFVKQN----------- 805

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                             + ++RR +  +  +                     G  R  +
Sbjct: 806 -------------GYSETLLKRRRYIREINSQN---------------YLERTGAERMAI 837

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
           N+                  I+Q  + DI+   M+              I+L VHDE++ 
Sbjct: 838 NS------------------IIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLI 879

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           E+P+ +   A ++   M  N ++   +PLK
Sbjct: 880 ESPEEECEKAQIIIKEMMEN-AYPLKIPLK 908


>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
 gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 97/600 (16%), Positives = 209/600 (34%), Gaps = 103/600 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVMPQ 55
             D ET S             E+  ++ F+F F+++        H         D  +  
Sbjct: 324 SFDTETTS------------LENPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEKIAL 371

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
              E +    V    HN  F+  +LK    +  P   +  T++L       S +     A
Sbjct: 372 KAIEKILEKKVI--GHNLKFDFKMLKDY-KIKTPTP-FADTMILGWIIDPDSPVGLDSLA 427

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +  + +  + KE++              +N+       +   +Y   D  +T ++++ L
Sbjct: 428 KRYLNHQNIKYKEIVG-------------KNQNFSEIDIKTAAKYASEDAIITLKLYEVL 474

Query: 176 EP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           +          + + E  L  +   +   G  VD+     L + +  +   L +E+ +L 
Sbjct: 475 KEKTWEEVKWDIENIEMPLINILIDMEKEGIKVDIEYLEKLQKELTQKLENLTKEIYNLA 534

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283
            G   + +  ++L   LF    L ++  T+T     ++VL+S K   P   ++   R + 
Sbjct: 535 -GSEFNIKSPKQLSHILFKVLKLPVKKKTKTGYSTDEKVLNSLKNTHPIIEKLLEYR-KF 592

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L E    D                             +  + +    Q  
Sbjct: 593 DKLLTTYIIPLKEYAKKD-----------------------------KNQKVYTNFLQTG 623

Query: 344 THLPTSITSDPDPLQIISD---CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
           T      + +P+   I +     +R+  I    K  +  D + IE R+LA  + +   ++
Sbjct: 624 TATGRLSSKNPNLQNIPTSTEINIRNAFI--TDKLFISLDYSQIELRLLAHFSKDPHLIE 681

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF   +D+++ T A+ F        K+ R+I K +   L Y  G    +K++ T  ++  
Sbjct: 682 AFLNDKDIHLETAAKIFG---EDKAKEYRSIAKSINFGLIYGMGP---KKLSETINVSTK 735

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +      E++ +  +  +   E       E  ++ T  +R  + +   +S  +  
Sbjct: 736 EAKEFI------EKYFENFSTVKDFIEKTKVETKEKGYVETLFKR--RRFFDFNSANART 787

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +    TI  G A    K+    ++ +K    +  ++L     L++     + +Y 
Sbjct: 788 LAAYEREAVNTIFQGSAADIIKKA---MIDIKNKFPSSKMILQIHDELIFEIDNKDEAYE 844


>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
 gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
          Length = 875

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/565 (15%), Positives = 183/565 (32%), Gaps = 68/565 (12%)

Query: 35  FGFDDHPV-------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNL 86
           +  D+ PV       +++    +  + +  KE  E+ D+        F+    +      
Sbjct: 328 YYVDNEPVIFAIYTDKVY-ITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRY 382

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            I I      +V+      PS  +        K+     +  +++  +    +T     +
Sbjct: 383 GIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           +   N+   + +F      +     E    +      E  L  +   +   G CV     
Sbjct: 443 KEIDNYIVKYMMFTNKL-YEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             + ++ + E   ++  +E L  G   +    ++L   LF +  L +    +T   T Q 
Sbjct: 502 VEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL +          +   R    +     ++ +V+ +  DG++                 
Sbjct: 561 VLEALSGRHEIIDYILRYRTIT-KLKTTYIDGMVDLIKKDGKI----------------- 602

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
                         H    Q I       +++P+   I         +R   + S G  L
Sbjct: 603 --------------HTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSGGNVL 648

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RVLA +A ++  + AF+ G D++  T +  F V   +VT  QR+  K + 
Sbjct: 649 LDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVN 708

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y  G  +         +        +      E + D     +   E+      E 
Sbjct: 709 FGIVYGIGDYSLS---KDLHITRKEAKEYI------ENYLDTYKGIKQYMEDIVAIGKEK 759

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R ++   +  S+   + +   +    T   G A    K   V       ++ 
Sbjct: 760 GYVETIMNR-RRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEK 818

Query: 557 NLI-LMLPSGRSLVYRDVGNNRSYL 580
               L+L     L+     + R  +
Sbjct: 819 LKAKLILQVHDELIVDCPKDEREKV 843


>gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6]
 gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6]
          Length = 885

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/484 (15%), Positives = 146/484 (30%), Gaps = 126/484 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L Y    + + G  V      T  + +     +L+  +     G   +    +
Sbjct: 485 YDEVEMPLVYTLCHMEEAGIRVLPDELETYGENLKEGIARLETSIYE-AAGEKFNINSPK 543

Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF +  L     T+T   T   VL       P    +   R      +    + L
Sbjct: 544 QLGVILFEKMQLPGGKKTKTGYSTAADVLEKLAVDVPFVADILEYRQLTKLKSTYA-DGL 602

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              + +DGR                                H    Q IT      +++P
Sbjct: 603 AACIAADGR-------------------------------IHTTFKQTITATGRISSTEP 631

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I     +   +R C +  +G   V AD + IE RVLA ++G++  ++A+   ED++
Sbjct: 632 NLQNIPTRIELGRQIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIH 691

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T ++ F+V  ++VT   R   K +   + Y   A     ++    ++       + + 
Sbjct: 692 AITASQVFHVPLSEVTPLMRRNAKAVNFGIVYGISA---HGLSEDLNISRKEAQEYIDS- 747

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                   + + +  +      L +  +
Sbjct: 748 ----------------------------------------YYEAYPGIRGYLESLVETAK 767

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +  +        +RR +P              L SG  +  R  G  R   N        
Sbjct: 768 K--KEYSETYYGRRRPMP-------------ELSSGNFMQ-RQFGE-RVAKNAP------ 804

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M    +          ++L VHDE++ ET + +   
Sbjct: 805 ------------IQGTAADIIKIAMNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELER 852

Query: 644 ASML 647
              +
Sbjct: 853 VREI 856


>gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik]
 gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik]
          Length = 600

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 115/582 (19%), Positives = 200/582 (34%), Gaps = 88/582 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  Y+      L  FG  D    L        + Q  +EAL+      V  N+
Sbjct: 40  VDTETTGLDIYSSTFRCRLVQFGTQDEAWVLPVDESPTQLQQETREALDKLGKI-VMQNA 98

Query: 74  YFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLS--------SQKM 123
            ++  VL  CF + +     + + T +LA+    P    A G    L           + 
Sbjct: 99  SYDLQVLDHCFGIKMEDLWPKVLDTQILAKLVD-PRPYGAGGFGHSLEELIAEFISKDQA 157

Query: 124 EEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           ++ K L+A+  K          +     H E    +  Y   D   T  I ++L  L   
Sbjct: 158 KDVKGLMAKLAKEHKTTKAKIWSTIDLFHPE----YLTYAGMDTIFTARICRKLTRLVPD 213

Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E ++  +   I+ +G+ +DV  A  L+     E++  +  L +  YGL  + 
Sbjct: 214 VSRGLVPYEHKISEICSYIDRKGFQLDVEYAQELSDRWLYEKSVWEAILFT-EYGL-DNP 271

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-----KKLTPQ---AIQVFNNRMRASR 285
              E+    +  E G  ++  T+T  ++V +       KK TP+      +     +  +
Sbjct: 272 NSNEQCADVI-EEAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAALAAMIQEAQKLGK 330

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +   +E  +SD R    +  L A RT R S    P Q LP    +          
Sbjct: 331 WRNTWVQKFLEVKDSDDRCHTFVNPLQA-RTSRMSITGIPAQTLPAGDWT---------- 379

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                             VR C +A  G  +   D    E RVLA ++G++  ++AF+TG
Sbjct: 380 ------------------VRRCFLAEPGHVMSSIDYQTQELRVLAALSGDKTMIEAFKTG 421

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            DL+  T             +  R IGK+      Y GGAK   + A+            
Sbjct: 422 ADLHQMTA---------DAAQVPRKIGKMANFLTVYGGGAKTLAEQAN------------ 460

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +   +A    E        +     + A E    G     + +      SR     N + 
Sbjct: 461 IDFPTAKRVLEAFAKTYPGVARYSKKLAAEAGRQGYIVNGMGRRLPVDSSRTYSALNYMI 520

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           Q+  + +     I   +    P + +      +   LP+ ++
Sbjct: 521 QSSSRDVTCRALIRLHEAGFTPYLRLPIHDEIVA-SLPAEKA 561


>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 849

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 84/531 (15%), Positives = 158/531 (29%), Gaps = 138/531 (25%)

Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210
             G   + R ++  L  L             E  L  +   +   G+ V+        + 
Sbjct: 421 WAGATILLRNLWDELSKLIDLNSCQYVYENIEIPLVPILYEMEKIGFKVNKNTLQEYTKE 480

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNK 267
           ++ +  KL+ ++  +  G   +    ++L   LF +  L +   T+T       VL    
Sbjct: 481 IESKLLKLETQIYQIA-GEWFNINSPKQLSYVLFEKLKLPVVKKTKTGYSTDAEVLEELY 539

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   + + RM                     ++  T                    
Sbjct: 540 DKHEIVPLILDYRMYT-------------------KILTTYCQGLMQAINSV-------- 572

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382
                 R H    Q  T      +++ +   I         +R   I  EG  L+ AD +
Sbjct: 573 ----TGRVHSNFIQTGTATGRLASAESNLQNIPVKYDEGRLIRKAFIPEEGYVLIDADYS 628

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA ++ ++  + AF+   D++  T A  F V  +QVT   R+  K +   + Y 
Sbjct: 629 QIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDVSQVTPTMRSQAKAVNFGIIYG 688

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                   ++    ++    A  +                                    
Sbjct: 689 ISDY---GLSKDIKISRKEAAEFIN----------------------------------- 710

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                  + +K+ +V E    L    +   ENG  +    R+         +KN      
Sbjct: 711 ------RYFEKYPKVKE---YLDNVVKFARENGFVLTLFNRKRYIKDIKSTNKN------ 755

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
              R+         R  +N+                   +Q  + DI+   M+       
Sbjct: 756 --LRNYA------ERIAMNSP------------------IQGSAADIMKIAMIRVYRRLK 789

Query: 618 -TKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                  I+L VHDE++ E+P +  E    ++   M +  S    +PL  E
Sbjct: 790 EENLKSRIILQVHDELLIESPYEEKEIVKEIVKTEMENAVS--LKVPLVVE 838


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 112/631 (17%), Positives = 182/631 (28%), Gaps = 144/631 (22%)

Query: 46  DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           D        +    A L +     V HN+      ++        I        LA    
Sbjct: 376 DPTEVDEEDERAFAAWLADPARPKVLHNAK---GAMRVFAEHGWTIEGVTMDTALAAYLV 432

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKG 163
            P       +AL L        + L          +           EA  L        
Sbjct: 433 KPGRRSFDLDALTL--------EYLGRELAPPAAADGQLAFGADEEAEADALMVQARAIL 484

Query: 164 DV--TVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           D+    T  + +      L   E     L   +   G   D A   ++ Q+      +  
Sbjct: 485 DLGEAFTGRLKEVGAADLLGDMELPTSALLARMERHGIAADRAHLESMEQMFAGAVQQAV 544

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK---LTPQAIQV 276
           +E  +   G   +    ++L+  LF E GL     T+T       +       T   + V
Sbjct: 545 REAHA-AAGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTENELPV 603

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R R      + +  L++ + +DGR+  T                             
Sbjct: 604 IMLRHREQAKLRVTVEGLIKTIAADGRIHTT----------------------------- 634

Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLA 390
              +Q +       ++DP+   I         +R   +  EG + L+ AD + IE RV+A
Sbjct: 635 --FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMA 692

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y   A    +
Sbjct: 693 HLSEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 752

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G+       L                                             
Sbjct: 753 ---QLGIEAAEARTL--------------------------------------------M 765

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                R   + + L +  E+    G       RR                 LP       
Sbjct: 766 EAYFERFGGVRDYLRRVVEEARATGYTATLFGRRRY---------------LP------- 803

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624
                    LN+  RQ  RE      L   I Q  + DI+   M+   +A         +
Sbjct: 804 --------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKIAMLRVGEALRAAGLASRM 853

Query: 625 VLTVHDEIVCE-TPDTDEFNASMLYHLMTSN 654
           +L VHDEIV E  P   E   ++L   MT+ 
Sbjct: 854 LLQVHDEIVLEIAPGERERVEALLRREMTTA 884


>gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
 gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
          Length = 871

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 124/388 (31%), Gaps = 45/388 (11%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L +    +   G  V+          +     +L++E+  +  G   +    ++L
Sbjct: 473 EIEMPLVFTLYEMEQAGIHVEGEALKAYGDQLGNRIVELEKEIYDMA-GETFNINSPKQL 531

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF +  +     T+T          KL P+   V                       
Sbjct: 532 GVILFEKLEMPHAKKTKTGYSTAADVLDKLAPEYPIVAK--------------------- 570

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   L++   ++              P   R H + +Q IT      +++P+   I
Sbjct: 571 -------ILEYRQLTKLKSTYADGLATFIGP-DGRIHGKFNQTITATGRISSTEPNLQNI 622

Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                +   +R   +  EG   V AD + IE R+LA  +G++  ++A+    D++  T +
Sbjct: 623 PVRMELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTAS 682

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F+V   +VT  QR   K +   + Y   +    +      +     A  +      E 
Sbjct: 683 QVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAARYI------EH 733

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           + +     +   +     A E  +  T   R +     K S   +  +   +        
Sbjct: 734 YFETYPGIKTFLDQCVADAKEKGYAVTLFGRRRPVPELKSSNFMQ-RSFGERVAMNAPIQ 792

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILML 562
           G A    K   + +    K +N    M+
Sbjct: 793 GTAADIIKIAMIRVSDEMKKQNMKSRMI 820


>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1]
 gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I
 gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1]
          Length = 956

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 101/548 (18%), Positives = 166/548 (30%), Gaps = 139/548 (25%)

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------- 181
           L A               +   RE W            +T  + + L PL          
Sbjct: 501 LYAYLLDPANTNMPVVAKRYLDRE-WPA---DAPTRAAITGHLLRELPPLLDDARRKMYD 556

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E+ L  +   +  RG  VD     TL+    V    L+ ++     G     R  ++L
Sbjct: 557 EMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYA-GEEFHIRSPKQL 615

Query: 240 KTWLFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +T L+ +  L     T+ T QR      L   +   P    V   R              
Sbjct: 616 ETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFREL------------ 663

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                   +LRGT                 P    P   R H    Q         + +P
Sbjct: 664 -------DKLRGT------------YLDPIPNLVNPHTGRLHTTFAQTAVATGRLSSLNP 704

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I     +   +R   IA +G  L+ AD + IE R+LA +A +    +AF  G D++
Sbjct: 705 NLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIH 764

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A+   +  A V  +QR   K +   + Y   A    ++++  G+            
Sbjct: 765 RRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSA---HRLSNDLGI------------ 809

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                + +A  F       +P       +I    +     + + H  V  L+        
Sbjct: 810 ----PYAEAATFIEIYFATYP---GIRRYINHTLD-----FGRTHGYVETLY-------- 849

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                       +RR VP +  +                            N   R+   
Sbjct: 850 -----------GRRRYVPGLSSR----------------------------NRVQREAEE 870

Query: 590 EYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETP-DTDEFNA 644
              Y        +Q  + DI+   M          G  ++L VHDE++ E P D  E  A
Sbjct: 871 RLAY-----NMPIQGTAADIMKLAMVQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVA 925

Query: 645 SMLYHLMT 652
           ++   +M 
Sbjct: 926 ALTKKVME 933


>gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 903

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 114/621 (18%), Positives = 184/621 (29%), Gaps = 139/621 (22%)

Query: 46  DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           D        +    A + +     V HN+     V++        +        LA    
Sbjct: 373 DPTQLEEADEQAFAAWVSDPARPKVLHNAK---NVMRVLPEHGWQLEGVTMDTALAAYLV 429

Query: 105 LPSALKAVGEALKLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            P       +AL +       G+EL  A    G+      DR + +   A          
Sbjct: 430 KPGRRSFALDALAVEYL----GRELAPAAAADGQLAFGADDRAEQDALMAQARAVLDLG- 484

Query: 164 DVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           D   TR + +    E L   E     L   +   G   D A    + Q       +  +E
Sbjct: 485 DAFTTR-LKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAVKE 543

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFN 278
             +   G   +    ++L+  LF E GL     T+T       +   L  Q      V  
Sbjct: 544 AHA-AVGREFNLGSPKQLQEILFNELGLPKTKKTKTGYTTDADALAWLAAQTEHELPVLM 602

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R R      + +  L++ + +DGR+  T                               
Sbjct: 603 LRHREQAKLRVTVEGLIKTIATDGRIHTT------------------------------- 631

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392
            +Q +       ++DP+   I         +R   +  EG + L+ AD + IE RV+A +
Sbjct: 632 FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y   A    +  
Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ-- 749

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               ++      L+ T                                            
Sbjct: 750 -QLNIDPAEARVLMDTYF------------------------------------------ 766

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R   + + LH+  E+    G       RR                 LP         
Sbjct: 767 --ERFGGVRDYLHRVVEEARATGYTETILGRRRY---------------LP--------- 800

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626
                  LN+  RQ  RE      L   I Q  + DI+   M+   KA         ++L
Sbjct: 801 ------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLRVDKALTEAGLTSRMLL 852

Query: 627 TVHDEIVCETPDTDEFNASML 647
            VHDEIV E    +      +
Sbjct: 853 QVHDEIVLEIAKGERKQVEEI 873


>gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
 gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
          Length = 873

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/510 (16%), Positives = 164/510 (32%), Gaps = 119/510 (23%)

Query: 153 AWRLFGEYCKGDVTVTREIFKR-LEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
           A   +  +   D    + + +  +E +    E  + Y+ +++   G  V+          
Sbjct: 448 ALEAYVAFNSFD-EAMKRLRETDMEKVYHDIELPVIYVLKSMEKYGIAVNKDALKQYGDE 506

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNK 267
           + V+   L+Q +     G   +    ++L   LF +  L     T+T       VL    
Sbjct: 507 LSVKIKDLEQSIYKEA-GTEFNINSPKQLGEVLFEKLNLPCGKKTKTGYSTSADVLEKLS 565

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    +   R  A   +            +DG      +++                
Sbjct: 566 ADYPIVDSILEYRTLAKLKSTY----------ADG----LAEYI---------------- 595

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLA 382
                 R H   +Q IT      +++P+   I     +   +R   +  +G   + AD +
Sbjct: 596 ---VDGRIHSTFNQTITATGRISSTEPNLQNIPIRMELGRKIRKVFVPEDGFIFMDADYS 652

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA M+G+   ++A+    D++  T ++ F     +VT  QR+  K +   + Y 
Sbjct: 653 QIELRLLAHMSGDDTLIEAYNEDRDIHKITASKVFKTPLDEVTPRQRSNAKAVNFGIVYG 712

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             +     ++    ++       +       E+ +     +   +N  + A E+ +  T 
Sbjct: 713 ISSF---GLSRDLSISKKEAKEYID------EYFNTYKTLKNYLDNLVKSAKENGYTKT- 762

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                               I  +RR VP              L
Sbjct: 763 ------------------------------------IYGRRRPVP-------------EL 773

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
            SG  +  R  G  R  +N+  +         G   + I  A+   I     +   +   
Sbjct: 774 SSGNFMQ-RQFGE-RIAMNSPLQ---------GTAADIIKIAM---INVYKRLKNERLES 819

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLM 651
            ++L +HDE++ ET   +E     +L   M
Sbjct: 820 RLILQIHDELLIETKIGEEEQVRKILSEEM 849


>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
 gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
          Length = 871

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/631 (14%), Positives = 184/631 (29%), Gaps = 153/631 (24%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
           +L    +      +L+  +E+  V  V H+S    T L      DI I  +     +A  
Sbjct: 356 KLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKY---DIDIQGFDFDTAIAAY 412

Query: 103 N--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                 +  +      +   + ++   + +   C     +      +  H+E        
Sbjct: 413 LIDSSKANYEVFDLINRFLEKDIKSDCDDLKAICSSYLTKLYEKLKERLHKED------- 465

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
                    E++ ++      E  L Y+  ++   G+ ++      L      +  K ++
Sbjct: 466 -------MDELYYKV------EHPLIYVLSSMESIGFKINKDKLEELRIKFKEQIEKTEK 512

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277
           E+  L      +    ++L   LF +  L +   T+T     Q VL       P   +V 
Sbjct: 513 EIYELAD-EEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLIDKHPIITKVM 571

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R     ++   +  L   ++ DG +                                 
Sbjct: 572 YYRQITKINSTY-VEGLKNVIDIDGCIHS------------------------------- 599

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAW 391
             +Q +T      +++P+   I         +R   I  +    L+  D + IE RVLA 
Sbjct: 600 NFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAH 659

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A ++  + AFE   D++  T +  F V   +VT   R+  K +   + Y     +    
Sbjct: 660 VADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSL--- 716

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A    +     A  +                                             
Sbjct: 717 AQDLKITKKEAAEYMAIYF----------------------------------------- 735

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +++ ++ E  N + +  ++  +     I  +RR +P +                      
Sbjct: 736 ERYPKIKEYLNYVSEYAKE--KGYVLTILNRRRFIPEIKSSNK---------------IV 778

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625
                R  +N                    +Q  + DI+   M+N            +++
Sbjct: 779 KALGERLAMNAP------------------IQGSAADIIKLAMVNVYNKLREKNLNSELI 820

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           L VHDE++      +      L    M    
Sbjct: 821 LQVHDELILNVKKDEFDIVKQLVIEEMEKAI 851


>gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP]
 gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP]
          Length = 897

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 145/431 (33%), Gaps = 57/431 (13%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           RL+  +  E+ L  +   +  RG  +D      L+  +     +L+ ++     G   S 
Sbjct: 492 RLKLYTEVEKPLSGVLARMEARGVRLDSEYLQGLSLALAERLERLEAQIHE-AAGREFSI 550

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAV 288
           R  ++L+  L+ E GL     T+ T +R      L   +   P    +   R        
Sbjct: 551 RSRDQLEAVLYDELGLASGKKTKLTGKRSTAMTALEPLRDEHPIIPLILEYRELE----- 605

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                         +LRGT                 P    PR  R H    Q       
Sbjct: 606 --------------KLRGT------------YLDPLPRLVNPRTGRLHTTFAQTAVATGR 639

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             + +P+   I         +R   IA  G +LV AD + +E R++A +AG++   +AF+
Sbjct: 640 LSSLNPNLQNIPIRSEEGRQIRKGFIADGGFRLVAADYSQLELRLMAHIAGDEPMQRAFQ 699

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G D++  T A+   +  + V  +QR   K +   + Y   A    ++++  G+      
Sbjct: 700 EGADIHRRTAAQVLGLDESTVDVNQRRAAKTVNFGVLYGMSA---HRLSNELGIPYAEAT 756

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             ++  +    +   + +     E   +H   +   G      ++   +  +R   L   
Sbjct: 757 SFIE--NYFGIYPGIQRYIEETLEFGRQHGYVETLYGR-----RRYVPELKARNRNLREA 809

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +        G A    K   V  +  + D     ++L     L    +    +     
Sbjct: 810 GERLAYNMPIQGTAADIMKMAMV-ALEPQLDALGARMLLQVHDEL----LIEAPADRAEE 864

Query: 584 TRQLTREYTYG 594
              LTR+   G
Sbjct: 865 VAALTRQVMEG 875


>gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 903

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 114/621 (18%), Positives = 184/621 (29%), Gaps = 139/621 (22%)

Query: 46  DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           D        +    A + +     V HN+     V++        +        LA    
Sbjct: 373 DPTQLEEADERAFAAWVSDPARPKVLHNAK---NVMRVFPEHGWRLEGVTMDTALAAYLV 429

Query: 105 LPSALKAVGEALKLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            P       +AL +       G+EL  A    G+      DR + +   A          
Sbjct: 430 KPGRRSFALDALAVEYL----GRELAPAAASDGQLAFGADDRAEQDALMAQARAVLDLG- 484

Query: 164 DVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           D   TR + +    E L   E     L   +   G   D A    + Q       +  +E
Sbjct: 485 DAFTTR-LKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAVKE 543

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFN 278
             +   G   +    ++L+  LF E GL     T+T       +   L  Q      V  
Sbjct: 544 AHA-AVGREFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHELPVLM 602

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R R      + +  L++ + +DGR+  T                               
Sbjct: 603 LRHREQAKLRVTVEGLIKTIAADGRIHTT------------------------------- 631

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392
            +Q +       ++DP+   I         +R   +  EG + L+ AD + IE RV+A +
Sbjct: 632 FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y   A    +  
Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ-- 749

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               ++      L+ T                                            
Sbjct: 750 -QLNIDPAEARVLMDTYF------------------------------------------ 766

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R   + + LH+  E+    G       RR                 LP         
Sbjct: 767 --ERFGGVRDYLHRVVEEARATGYTETILGRRRY---------------LP--------- 800

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626
                  LN+  RQ  RE      L   I Q  + DI+   M+   KA         ++L
Sbjct: 801 ------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLRVDKALTEAKLTSRMLL 852

Query: 627 TVHDEIVCETPDTDEFNASML 647
            VHDEIV E    +      +
Sbjct: 853 QVHDEIVLEIAKGERQQVEEI 873


>gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122]
 gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122]
          Length = 905

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/477 (15%), Positives = 142/477 (29%), Gaps = 129/477 (27%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             +  L  +   +   G  +DV     + + V  E   +   +  L  G   +    ++L
Sbjct: 506 DIDLPLVPVLAVMERVGARIDVDALAEMGRSVAEEIDGIRTRVFELA-GEEFNLDSPKQL 564

Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF + GL     T+   +T  + LS  + + P A ++   R  A   +   +  L  
Sbjct: 565 SVVLFEKLGLPHGKKTQRGYSTDAKTLSKLEDVHPIAREILRYRELAKMESTY-IEALPR 623

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               DG                                 H   +Q +T      +SDP+ 
Sbjct: 624 MRAGDG-------------------------------LVHTHFNQTVTTTGRLSSSDPNL 652

Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R C +    G   + AD + IE R+LA ++ ++  + AF +G D + 
Sbjct: 653 QNIPVRTEFGRRIRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHA 712

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           +T AR F V   +VT   R+  K +   + Y   A     +A   G+       ++    
Sbjct: 713 STAARVFGVPLEEVTPSMRSRAKAVNFGIVYGQQAF---GLAQNLGIGFKEAQEMID--- 766

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               + +A    R   +   E                                      +
Sbjct: 767 ---RYFEAYPGVRAFLDGTVEE------------------------------------VR 787

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTR 589
                  +  R+R                  +P  ++      G   R+ +N   +    
Sbjct: 788 ACGYATTMFGRRRH-----------------IPELKAKNPAQRGFGERTAMNHPMQ---- 826

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD 640
                           + DI+   M    +          +++ VHDE+    P ++
Sbjct: 827 --------------GSAADIVKMAMNEVQRRLVDGGFAAQVMIQVHDELDLSVPVSE 869


>gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4]
 gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4]
          Length = 885

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 104/662 (15%), Positives = 204/662 (30%), Gaps = 156/662 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
             F       ELW      ++ +  L E L N  V +   +       L     + +   
Sbjct: 341 CGFAI-GTDKELWVSDDVELLREPALSEILANQKVVVNVFDGKRTYVGLHR-LGVTLNSI 398

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            +   L     +   ++      A +   + ++   E+     K         R  P   
Sbjct: 399 NYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAK---------RAVPAKD 449

Query: 152 EAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWY--------LDQTINDRGYCVDV 201
                     K DV     R + + L  +++++ +L++        +   +   G  VD 
Sbjct: 450 VLLEHLAH--KIDVIGELGRRLQEEL--INNQQADLYWKIELPLSIVLAKMEISGIKVDR 505

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                +   +    ++L+ ++     G   +    ++L   LF +    +   T+T    
Sbjct: 506 ERLGAMQSELTERLSELESQIHQEA-GEEFNINSPKQLGHILFEKLEFPVIKKTKTGYST 564

Query: 262 ---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +  +P    + + R  A   +          ++   ++  +           
Sbjct: 565 AVNVLEKLRGYSPIIDHILDYRTIAKIKSTY--------VDGLLKVIHSTDQ-------- 608

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                          + H    Q +T      ++DP+   I         +R   + S E
Sbjct: 609 ---------------KVHTTYQQTLTQTGRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHE 653

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAI 431
           G  ++ +D + IE RVLA + G+    +AF+  ED++ +T  R F     ++VT + R  
Sbjct: 654 GWHILSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQ 713

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y        +     G++       + T      +       +   +   E
Sbjct: 714 AKAVNFGIVYGISDYGLSQ---NIGISRKDAKRFIDT------YFKEYPGVKKYVDGSVE 764

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
            A E  ++ T                                     IA +RR +P ++ 
Sbjct: 765 TAREKGYVET-------------------------------------IAHRRRYLPDIHA 787

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                       S RS         R+ +NT                   +Q  + DI+ 
Sbjct: 788 SNF---------SVRSFA------ERTAMNTP------------------IQGSAADIIK 814

Query: 612 EGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
             M+N             ++L VHDE++ E PD +      L   +M S       +PLK
Sbjct: 815 IAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLK 872

Query: 665 AE 666
            E
Sbjct: 873 VE 874


>gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 930

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/523 (15%), Positives = 166/523 (31%), Gaps = 136/523 (26%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            D+   R  ++      + E  L ++   +  RG  VD  +   +   +D   +++  ++
Sbjct: 508 EDILQERNQWQL---YKNIELPLAFILARMEFRGIKVDARVLTEMEANIDHRLSEISTKI 564

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNN 279
             +  G   +    ++L   LF +  L +   T+T      + L +          + + 
Sbjct: 565 FEIA-GEEFNLNSPKQLGYILFEKLQLPVVKKTKTGYSTDAKTLETLSHDYEICKLLLDY 623

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     L  L + ++                                  + H   
Sbjct: 624 RQL-HKLKTTYLVGLKDLISKT------------------------------TGKIHTTY 652

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMA 393
           +Q IT      ++DP+   I         +R   +     +  + AD + IE R+LA ++
Sbjct: 653 NQTITATGRLSSTDPNLQNIPIKLEEGRKIRKGFVIQNSDQLFLAADYSQIELRILAHVS 712

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   ++AF+  +D++  T A+ F V   QVT++ R+  K +   + Y         ++ 
Sbjct: 713 EDTNLIQAFQEQQDIHTQTAAQVFEVESTQVTREMRSHAKAVNFGIVYGISDY---GLSR 769

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++       +                                               
Sbjct: 770 QLGISRKQAKTYIDNYLT------------------------------------------ 787

Query: 514 HSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             R S +   + Q   Q   NG    +  +RR++P +              S R+   R 
Sbjct: 788 --RFSGVKEYMDQIVNQAKMNGYVETLYNRRRNLPDI--------------SHRNFNIRS 831

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--------I 624
               R+ +NT                   +Q  + DI+ + M+   K            +
Sbjct: 832 A-AERTAINTP------------------IQGTAADIIKDAMVKVEKELEKQDLLDKAAL 872

Query: 625 VLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           +L VHDE++ E   +     A+ +  +M +       +PL  +
Sbjct: 873 LLQVHDELILEINKEVLSDVATKVKEIMENIIE--LKVPLTVD 913


>gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
 gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
          Length = 870

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 83/488 (17%), Positives = 152/488 (31%), Gaps = 127/488 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G+ VD A      + +  +   ++QE+     G   +    ++L
Sbjct: 471 EVELPLARVLAQMEHAGFLVDAAGIAAYGETLGKKLAAIEQEIVD-AVGYPFNLNSPKQL 529

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF++ GL     T+T   T   VL   +   P    +   R                
Sbjct: 530 GEALFVKLGLPHGKKTKTGWSTSADVLDKLRGAHPAIDALLGYRKL-------------- 575

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                            S+           + +    R H   +Q+ T      +++P+ 
Sbjct: 576 -----------------SKLKSTYTDGL-LKVIAPDGRIHSSFNQVETRTGRISSTEPNL 617

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I         +R   +A  G  LV AD + IE R+LA +A +   + AF   ED++  
Sbjct: 618 QNIPVRSAEGRELRRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTI 677

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T ++ F + P  VT   R+  K +   + Y  GA +  +     G+++      +K    
Sbjct: 678 TASQVFGMPPEYVTPIMRSRAKAVNFGIVYGIGAFSLSQ---DIGVSVKEADSYIKG--- 731

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +    +  R   E                    +  R+ H +               
Sbjct: 732 ---YLQKFSGVRDYME--------------------RVIREAHEK--------------- 753

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
               + +  R+R              L  +L S  ++        R   NT         
Sbjct: 754 -GYVETLFGRRR-------------VLPELLSSNHNMRAF---GERVARNTP-------- 788

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+   M+              ++L VHDE++ E P+ +   A 
Sbjct: 789 ----------IQGTAADIIKIAMVRVRDRLEREQMQSALILQVHDELIVEAPEDEAARAG 838

Query: 645 SMLYHLMT 652
            +L   M 
Sbjct: 839 QILEEEME 846


>gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
 gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
          Length = 903

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 114/621 (18%), Positives = 184/621 (29%), Gaps = 139/621 (22%)

Query: 46  DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           D        +    A + +     V HN+     V++        +        LA    
Sbjct: 373 DPTQLEEADERAFAAWVSDPARPKVLHNAK---NVMRVFPEHGWRLEGVTMDTALAAYLV 429

Query: 105 LPSALKAVGEALKLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            P       +AL +       G+EL  A    G+      DR + +   A          
Sbjct: 430 KPGRRSFALDALAVEYL----GRELAPAAASDGQLAFGADDRAEQDALMAQARAVLDLG- 484

Query: 164 DVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           D   TR + +    E L   E     L   +   G   D A    + Q       +  +E
Sbjct: 485 DAFTTR-LKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAVKE 543

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFN 278
             +   G   +    ++L+  LF E GL     T+T       +   L  Q      V  
Sbjct: 544 AHA-AVGREFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHELPVLM 602

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R R      + +  L++ + +DGR+  T                               
Sbjct: 603 LRHREQAKLRVTVEGLIKTIAADGRIHTT------------------------------- 631

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392
            +Q +       ++DP+   I         +R   +  EG + L+ AD + IE RV+A +
Sbjct: 632 FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y   A    +  
Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ-- 749

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               ++      L+ T                                            
Sbjct: 750 -QLNIDPAEARVLMDTYF------------------------------------------ 766

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R   + + LH+  E+    G       RR                 LP         
Sbjct: 767 --ERFGGVRDYLHRVVEEARATGYTETILGRRRY---------------LP--------- 800

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626
                  LN+  RQ  RE      L   I Q  + DI+   M+   KA         ++L
Sbjct: 801 ------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLRVDKALTEAKLTSRMLL 852

Query: 627 TVHDEIVCETPDTDEFNASML 647
            VHDEIV E    +      +
Sbjct: 853 QVHDEIVLEIAKGERKQVEEI 873


>gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
 gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
          Length = 871

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 84/537 (15%), Positives = 162/537 (30%), Gaps = 137/537 (25%)

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAH 205
           +AW             +  ++KRL+           E  L +    +   G  V+     
Sbjct: 439 DAWMKACYEAYTAYAASGILWKRLKECLMDRLFMDVEMPLVFTLYDMEVNGVRVEAEALK 498

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRV 262
                +  +  +L++++     G   +    ++L   LF    +     T+T   T   V
Sbjct: 499 YYGDQLGAKIVELEKDIYEEA-GENFNINSPKQLGVVLFENMKIPGGKKTKTGYSTAADV 557

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L       P   ++   R      +    + L   +  DG                    
Sbjct: 558 LEKLAPDYPIIAKILEYRQYTKLKSTYA-DGLANYIREDG-------------------- 596

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377
                      R H + +Q IT      +++P+   I     +   +R   I  +G   V
Sbjct: 597 -----------RIHSKFNQTITATGRLSSTEPNLQNIPIRVELGRLIRKVFIPEDGFVFV 645

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA  +G+   ++A++  +D++  T ++ F++   +VT  QR   K +  
Sbjct: 646 DADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFDEVTDQQRRNAKAVNF 705

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y   +    +  S T                                      IED 
Sbjct: 706 GIVYGISSFGLSQDLSIT-------------------------------RKEASKYIEDY 734

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
           F               +  +    ++  +  ++ +     +  R+R    L      + +
Sbjct: 735 FT-------------AYPGIKIFLDDTVKHAKE-MGYVVTLFGRRRPVPELSSSNYMQRS 780

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                              R  +N                    +Q  + DI+   M   
Sbjct: 781 F----------------GERVAMNAP------------------IQGTAADIIKIAMTGV 806

Query: 618 ------TKAGYDIVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                  K    +VL VHDE++ E   P+ D+    +L   M    S    +PL+ +
Sbjct: 807 GRRLKEQKMKSRLVLQVHDELLVEAYKPELDQVK-KILKEEMEQAAS--LDVPLEID 860


>gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 879

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 157/491 (31%), Gaps = 127/491 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   +   G  V+  L   L+  +     ++ +    +  G   +    +
Sbjct: 476 LTDIEMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVI-GREINLGSPK 534

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN---TL 294
           +L+  LF +  +      +T      +S   L  QA   F N +   R A   +     +
Sbjct: 535 QLQEVLFTQLEMPKTRANKTGYSTDAASLADLQEQAPHPFLNLLLQHRDATKLVQIITGI 594

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            +A++  GR+  T                                +Q  +      ++DP
Sbjct: 595 EKAIDDSGRVHTT-------------------------------YEQAGSSTGRIASNDP 623

Query: 355 DPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   +         +RS   A  G   L+ AD + IE R++A ++G++  ++AF  GEDL
Sbjct: 624 NLQNVPIKTATGRQIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDL 683

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    +R F V PA+VT + R   K M   L Y   A     ++    +  +    L+  
Sbjct: 684 HRFVGSRIFGVEPAEVTAEMRTKVKAMSYGLAYGLSAF---GLSKQLRIETSEAKALMT- 739

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                         +R   + + L    
Sbjct: 740 -------------------------------------------DYFARFGAVRDYLRNVV 756

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           EQ   +G       RR                  P G              LN+  R L 
Sbjct: 757 EQARTDGYTTTIFGRRR-----------------PFGD-------------LNSKNRVL- 785

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMN------ATKAGYDIVLTVHDEIVCETPDTD-E 641
           R+      L   I Q  + DIL   M+              ++L VHDE+V E    + E
Sbjct: 786 RDNAERQALNSPI-QGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELE 844

Query: 642 FNASMLYHLMT 652
              ++++  M+
Sbjct: 845 RMTTIVHERMS 855


>gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411]
 gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411]
          Length = 801

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 159/485 (32%), Gaps = 125/485 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           LS  E  L  +  ++  RG  +D     +    +  +    ++++ +L  G   +    +
Sbjct: 402 LSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLYATEKQIHALA-GEEFNINSTK 460

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT---PQAIQVFNNRMRASRSAVLKLNTL 294
           +L+  LF + G+     T+T       S + L      A  +   R   S+     +   
Sbjct: 461 ELQRILFEKLGIKPIKKTKTGYSTDSESLQMLAQKYEIAQLIITYR-AISKVISTYIRPF 519

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ M+   RL  T                                +Q +T      +S+P
Sbjct: 520 LDKMDKSNRLHTT-------------------------------FNQTLTSTGRLSSSNP 548

Query: 355 DPLQIISDC------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   + +        +R  V+A +G KL+ +D + IE RVLA M+ ++  ++ F+  ED+
Sbjct: 549 NLQNLPAGDDELHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDI 608

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T  + F V P+ V    R + K +   + Y  G   +  ++ T  ++ +     ++ 
Sbjct: 609 HTQTAVKIFGVHPSMVDHHLRRMAKTINFGIIYGMG---YVSLSKTLNISKDKARQFIE- 664

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                      +   R + + + +    
Sbjct: 665 -------------------------------------------KYFERFAGVKSYIENTT 681

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           E+  +NG              Y              GR   + ++ +N   L    ++  
Sbjct: 682 EKATKNG----------FVETYF-------------GRRRYFFNINSNNKRLAQFEKRA- 717

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNA 644
                        +Q  + DI+   M+            IVL VHDE++ E  +    N 
Sbjct: 718 --------AVNATIQGTAADIIKIAMVKLYEKLKNLDAHIVLQVHDELLVEAKEDIAENV 769

Query: 645 SMLYH 649
           + +  
Sbjct: 770 AGIVK 774


>gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
 gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
          Length = 885

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 104/662 (15%), Positives = 204/662 (30%), Gaps = 156/662 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
             F       ELW      ++ +  L E L N  V +   +       L     + +   
Sbjct: 341 CGFAI-GTDKELWVSDDVELLREPALSEILANQKVVVNVFDGKRTYVGLHR-LGVTLNSI 398

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            +   L     +   ++      A +   + ++   E+     K         R  P   
Sbjct: 399 NYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAK---------RAVPAKD 449

Query: 152 EAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWY--------LDQTINDRGYCVDV 201
                     K DV     R + + L  +++++ +L++        +   +   G  VD 
Sbjct: 450 VLLEHLAH--KIDVIGELGRRLQEEL--INNQQADLYWKIELPLSIVLAKMEISGIKVDR 505

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                +   +    ++L+ ++     G   +    ++L   LF +    +   T+T    
Sbjct: 506 ERLGAMQSELTERLSELESQIHQEA-GEEFNINSPKQLGHILFEKLEFPVIKKTKTGYST 564

Query: 262 ---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +  +P    + + R  A   +          ++   ++  +           
Sbjct: 565 AVNVLEKLRGYSPIIDHILDYRTIAKIKSTY--------VDGLLKVIHSTDQ-------- 608

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372
                          + H    Q +T      ++DP+   I         +R   + S E
Sbjct: 609 ---------------KVHTTYQQTLTQTGRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHE 653

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAI 431
           G  ++ +D + IE RVLA + G+    +AF+  ED++ +T  R F     ++VT + R  
Sbjct: 654 GWHILSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQ 713

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y        +     G++       + T      +       +   +   E
Sbjct: 714 AKAVNFGIVYGISDYGLSQ---NIGISRKDAKRFIDT------YFKEYPGVKKYVDGSVE 764

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
            A E  ++ T                                     IA +RR +P ++ 
Sbjct: 765 TAREKGYVET-------------------------------------IAHRRRYLPDIHA 787

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                       S RS         R+ +NT                   +Q  + DI+ 
Sbjct: 788 SNF---------SVRSFA------ERTAMNTP------------------IQGSAADIIK 814

Query: 612 EGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
             M+N             ++L VHDE++ E PD +      L   +M S       +PLK
Sbjct: 815 IAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLK 872

Query: 665 AE 666
            E
Sbjct: 873 VE 874


>gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 833

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/506 (16%), Positives = 156/506 (30%), Gaps = 127/506 (25%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           + L      E+ L  +      RG  VD ++   +  +   +   L  ++  L  G+  +
Sbjct: 437 EVLSVYEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELA-GMEFN 495

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L   LF    L  +    T    VL    +       +   R +  +       
Sbjct: 496 LNSPKQLAEVLFDHLKLPTKKKRSTAV-DVLEGLIEEHAIIAPILEYR-KYQKLYSTYAV 553

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L + +++DG++                               H   +Q  T      +S
Sbjct: 554 GLTKHIHADGKI-------------------------------HTSFNQHATQTGRLSSS 582

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           DP+   I      +  +R   +ASEG  L+  D + IE RVL+++A E+  ++AF  G D
Sbjct: 583 DPNLQNISVRDEETRMIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHD 642

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T    F V    VT   R   K +   + Y         ++    + +    H + 
Sbjct: 643 IHSETAKAIFGV--DDVTSTMRRQAKSVNFGIVYGMSEY---GLSKQLDITIPEARHFIT 697

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                  + +         ++  E  + D ++ T                          
Sbjct: 698 ------RYNEIYPNITKYMDSVVEDCLRDGYVKTLFN----------------------- 728

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                         +RR +P +Y                +         R+ +N      
Sbjct: 729 --------------RRRYIPEIY---------------DANRAVKDFGKRAAMNAP---- 755

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTD 640
                         +Q  + DI+   M+ A +          ++L VHDE+V +   D  
Sbjct: 756 --------------IQGTAADIIKIAMIKADELLTSNNYKSSMILQVHDELVFDVYDDEL 801

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E    ++  +M    SW   L +  +
Sbjct: 802 EQIQDLMVSVMEHIVSWPIDLNVSVD 827


>gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
 gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
          Length = 420

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 77/488 (15%), Positives = 143/488 (29%), Gaps = 119/488 (24%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           L      E         +  RG  VD          +     +L + +     G   +  
Sbjct: 17  LSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEA-GEEFNIN 75

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF    L     T+T       VL   + L P    +   R      +    
Sbjct: 76  SPKQLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTY-- 133

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                                A     + G            R H + +Q IT      +
Sbjct: 134 ---------------------ADGLANYIGDD---------ERIHGKFNQTITATGRISS 163

Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           ++P+   I     +   +R   +  EG   V AD + IE RVLA ++ ++  + A+E  +
Sbjct: 164 TEPNLQNIPARVELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQ 223

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T +  F V   QV+  QR   K +   + Y   A    +      +        +
Sbjct: 224 DIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQ---DLKITRKQAQEYI 280

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                  ++ +     +       E   E+ F+ T  +R++     K S   +       
Sbjct: 281 D------KYFETYPKVKKYLNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQ------- 327

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                                                       R+ G  R  +N+  + 
Sbjct: 328 --------------------------------------------RNFGE-RVAMNSPIQ- 341

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   G   + I  A+ R      M +   K    ++L +HDE++ E  D++     
Sbjct: 342 --------GSAADIIKIAMIR----VNMELKKRKLKSRLILQIHDELLIEAHDSE---VE 386

Query: 646 MLYHLMTS 653
            +  ++T 
Sbjct: 387 EVKGILTR 394


>gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 222

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 108/272 (39%), Gaps = 63/272 (23%)

Query: 416 SFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAP 472
            FNVA  +  V    R  GK+ ELALGY G   A + M +   G+               
Sbjct: 1   MFNVAVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEELQ--------- 51

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                            +  AWRQ +S +++LW ++ +A +  +
Sbjct: 52  --------------------------------PLVTAWRQSNSNITKLWWDVDRAVKVCV 79

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRSYLN-TT 583
           +           +   +        L ++LPSGR L Y           G + +Y     
Sbjct: 80  KQKTP------TETHGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGG 133

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           T++  R  +YG K  ENIV A+SRDIL   M         IV  VHDEI+ E      F+
Sbjct: 134 TKKWERIESYGPKFVENIVHAISRDILYHAMQTLKN--CSIVAHVHDEIIIEADMRMSFS 191

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           A  +   M   PSWA GL L A+GYE + Y+K
Sbjct: 192 A--ICEQMARTPSWANGLLLSADGYECQFYQK 221


>gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 888

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 109/633 (17%), Positives = 177/633 (27%), Gaps = 157/633 (24%)

Query: 54  PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           P  L EA        L + +   V HN+      ++        I        LA     
Sbjct: 359 PSELDEADERALTAWLADPERPKVFHNAK---GAMRVFAEHGWTIEGVTMDTALAAYLVK 415

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGD 164
           P       +AL L        + L          +        +  EA  L        D
Sbjct: 416 PGRRSFDLDALSL--------EYLHRELAPAAAPDGQLAFGADDGAEAEALMVQARAILD 467

Query: 165 V-------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           +                L      E     L   +   G   D      + Q+      +
Sbjct: 468 LGEAFEGRLAEVGAADLLR---DMELPTSALLARMERHGIAADREHLQAMEQMFAGAVQQ 524

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAI 274
             +E  +   G   +    ++L+  LF E  L     T+T        L+     T   +
Sbjct: 525 AVKEAHA-AAGHEFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLATQTDNEL 583

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            V   R R      + +  L++ + +DGR+  T                           
Sbjct: 584 PVIMLRHREQAKLRVTVEGLIKTIAADGRIHTT--------------------------- 616

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARV 388
                +Q +       ++DP+   I         +R   +  EG + L+ AD + IE RV
Sbjct: 617 ----FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIELRV 672

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ +    +AF +GEDL+ T  A+ F+V  + V  + R   K M   L Y   A   
Sbjct: 673 MAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGLSAFGL 732

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            +      +       L                                           
Sbjct: 733 SQ---QLNIEAAEARAL------------------------------------------- 746

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                  R   + + L +  ++    G       RR                 LP     
Sbjct: 747 -MDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRY---------------LP----- 785

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------Y 622
                      LN+  RQ  RE      L   I Q  + DI+   M+N  +A        
Sbjct: 786 ----------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKIAMLNVDRALREADLRS 833

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654
            ++L VHDEIV E    +      L    M++ 
Sbjct: 834 RMLLQVHDEIVLELAPGERAAVEELVRREMSTA 866


>gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock]
          Length = 595

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 117/566 (20%), Positives = 192/566 (33%), Gaps = 92/566 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69
           +D    G+  Y++     L  FG  D     PVEL D   + V  ++   AL      +V
Sbjct: 40  VDTETTGLDIYSDTFECRLVQFGTQDEAWVVPVELGDVFIEDV--RIAIGALR----KVV 93

Query: 70  AHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLS-------- 119
             N+ ++  VL  CF +++     R + T +LA+    P   +A G    L         
Sbjct: 94  LQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVD-PRPFEAGGFGHSLEELIAEFIS 152

Query: 120 SQKMEEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            ++ E  K+L+A+  +                H E    + +Y   D   T  + K L P
Sbjct: 153 KEQAETVKKLMAKLAQEHKTTKAKIWATIDLFHPE----YLKYAGMDTIFTARVCKALTP 208

Query: 178 LSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           L           E E+  +   I+ +G+ +DV  A  L+     ++     E  + T   
Sbjct: 209 LVPDVSRGLVAYEHEISEICSYIDRQGFLLDVEYAQELSDKWLADQQVW--EAIAFTEYG 266

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASR 285
           V      E L   L  E G+ +   TET      + +L        +   +     +  +
Sbjct: 267 VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQVDKTLLEKLVAEGNELATIAQEAKKLGK 325

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +   ++  +++ R    +  L A RT R S    P Q LP               
Sbjct: 326 WRKTWVQKFLDTRDAEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASD------------ 372

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                             VR C +A EG  +   D    E RVLA ++ +Q  ++AF+TG
Sbjct: 373 ----------------STVRRCFLAEEGDVMASIDYQTQELRVLAALSNDQTMIEAFKTG 416

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            DL+  T         AQVT   R +GK+      Y GGAK   + A             
Sbjct: 417 ADLHQMTA------DAAQVT---RKVGKMANFLTVYGGGAKTLAEQAKV---------DF 458

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                  + +         + +     A    +I T   R         SR     N + 
Sbjct: 459 PTAKRTLDAFARTYPGVARLSKKLGTEAGRKGYIVTPVGR---RLPVDSSRSYSALNYMV 515

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYM 551
           Q+  + +     I   K    P + +
Sbjct: 516 QSSSRDVTCRALIRLHKAGYTPYLRL 541


>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
 gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
          Length = 924

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 136/416 (32%), Gaps = 56/416 (13%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            V RE    L+     +  L  +   +   G  +D  +   L   +  +  ++ Q++   
Sbjct: 512 EVERE--DTLKVYEQIDLPLAPVLLAMEQHGVRIDSEMLRALGDRLAADMHRVSQQIYEQ 569

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
             G   +    ++L   LF +  L         +  +T Q VL            V   R
Sbjct: 570 A-GHRFNINSPKQLGDVLFNKMNLPRPLKYGKGKVISTAQDVLEELAAHNDVPRLVLEFR 628

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             A                               +         P     +  R H    
Sbjct: 629 QLA-------------------------------KLKSNYVDSLPLLADSQ-GRVHTTFH 656

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q+ T      +++P+   I     +   +R+  IA+ G+KL+ AD + IE R++A  + +
Sbjct: 657 QVGTATGRLSSTNPNLQNIPVRTALGREIRAAFIAAPGRKLLSADYSQIELRLMAHFSED 716

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L A+ TG+D++  T +  F VAP  + K+ R   K +   + Y         +A   
Sbjct: 717 PLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNFGIVYGISPF---GLAQQL 773

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++ +     + T  A           R   +   E    +  + T   RV+       S
Sbjct: 774 GIDQHEARQYIDTYFARY------QGVRAYIDRVLEQTRREQRVRTLFGRVRP-IPDIQS 826

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
           R +       +    T   G A    K   + +    K KN   ++ L     L++
Sbjct: 827 RNANQRGFAERTAVNTPLQGTAADLIKLAMIRIDARIKKKNLQTLMTLQVHDELLF 882


>gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
 gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
          Length = 894

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 104/628 (16%), Positives = 191/628 (30%), Gaps = 147/628 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGEAL 116
           L + +   V H        LKA     + +   +    ++     P      L  + +  
Sbjct: 378 LRDPESPKVLHGFK---AALKALTARGLELEGVVDDTSISGYLIQPDRRTYELAELAQHH 434

Query: 117 ---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               + +   + G +L   F   +T              A   F E         R   +
Sbjct: 435 LNVGMPAATAKAG-QLELSFDGNDTAAAEALVQAAAVVSALSRFFETE----LKERRAEE 489

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            L  L   E  +  +   +   G  +D+         +     +  ++  +   G   + 
Sbjct: 490 LLSTL---ELPVSRVLADMELAGIGIDLDRMDEQLADLARVIDQAQEQAFA-AIGHEVNL 545

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--- 290
              ++L+T LF E  L      ++      +S K L  +    F  ++ A R A      
Sbjct: 546 GSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLEKTGHEFLVQLMAHREAAKLRQM 605

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + +L +++  DGR+  T                                 Q +       
Sbjct: 606 IESLKKSVAEDGRIHTT-------------------------------YAQNVAATGRIS 634

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +++P+   I         VR   + S+G + L+ AD + IE R++A ++G+   ++A++ 
Sbjct: 635 SNNPNLQNIPIRSEEGRRVRGIFVVSDGYECLLSADYSQIEMRIMAHLSGDAGLIQAYKD 694

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GEDL+    +  F+V   QVT   R+  K M   L Y   +     ++    ++++    
Sbjct: 695 GEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSF---GLSKQLEISVDEART 751

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           L+K                                                R   + + L
Sbjct: 752 LMK--------------------------------------------DYFDRFGAVRDYL 767

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
               +Q   +G       RR                 LP                L +T 
Sbjct: 768 RGVVDQARVDGYTSTIEGRRRY---------------LP---------------DLTSTD 797

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPD 638
           RQL RE      L   I Q  + DI+   M+              ++L VHDE+V E   
Sbjct: 798 RQL-RENAERIALNSPI-QGSAADIIKRAMLGVHAELQAQGLKSRMLLQVHDELVLEVAP 855

Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            +      L    M +       +PL+ 
Sbjct: 856 GERAAVEALVTEQMAAAAD--LSVPLEV 881


>gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 537

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 105/632 (16%), Positives = 183/632 (28%), Gaps = 140/632 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGE 114
           L + L + DV   AH+      VL A  +    +        LA     P          
Sbjct: 10  LGDWLADADVPKAAHDVK---AVLHALRSRGWSLAGLTSDTALAAYLARPGQRTFDLADL 66

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+   +++   +    +       +    +       A     E     +         
Sbjct: 67  ALRYLRRELRTEEPADGQLSLLGGADEADAQAAQQEMLAASAIAELADA-LDTELAERGG 125

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            E L+  E  L ++       G  VD      L      +  +  Q    +  G   +  
Sbjct: 126 TELLADLELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVI-GKEINLG 184

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKL 291
             ++L+  LF E  +     T+T       + + L  Q    F   +   R A    + +
Sbjct: 185 SPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLYEQTGHEFLQFLLQHRDATRLKVTV 244

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           + L++++  DGR+  T                                 Q I       +
Sbjct: 245 DGLIKSVADDGRIHTT-------------------------------YSQTIAATGRLSS 273

Query: 352 SDPDPLQII-----SDCVRSCVIASEG------KKLVVADLAGIEARVLAWMAGEQWKLK 400
           +DP+   +         +R   +   G       +L+ AD + IE R++A ++ ++  ++
Sbjct: 274 TDPNLQNVPIRTAAGRRIRDAFVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIE 333

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +  D +  T AR F V  A V+ +QRA  K M   L Y   A         +     
Sbjct: 334 AFRSQHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGLAYGLSAYGLSGQLRIS----- 388

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                      +  K       +    +
Sbjct: 389 ------------------------------------------TDEAKGLMDDYFAGFGGV 406

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            + L    +Q  ++G       RR                 LP                L
Sbjct: 407 RDYLAGVVDQARKDGYTATILGRRRY---------------LP---------------DL 436

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVC 634
            +  RQ  RE      L   I Q  + DI+   M+   +A         ++L VHDE+V 
Sbjct: 437 TSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLGVRRALSAEGLRSRMLLQVHDELVL 494

Query: 635 ETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
           E  D +      L    M +       +PL+ 
Sbjct: 495 EVADGERETCEALVRREMAAAAD--LSVPLEV 524


>gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e]
 gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e]
          Length = 306

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 123/285 (43%), Gaps = 45/285 (15%)

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ--------- 486
           EL LGY+GG  AF   A   GL+L   A  +        W        W +         
Sbjct: 22  ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 81

Query: 487 ---ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-------- 535
              ++     I D  +   C+ +K+ WR+ H      W +L       + N         
Sbjct: 82  PGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAGA 141

Query: 536 -------KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS---------- 578
                  +AI   +  +      K     L + LPSGR L Y  +G + +          
Sbjct: 142 HLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRIN 201

Query: 579 --------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                     N  TRQ T  YT+GGK  ENIVQA+ RD+LA  M+N    GY IVL+VHD
Sbjct: 202 TNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVHD 261

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+VCETPDT ++  + L  LM + P WA G PL AEG E KRY K
Sbjct: 262 ELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306


>gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
 gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
          Length = 895

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 101/677 (14%), Positives = 204/677 (30%), Gaps = 166/677 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
             D ET S   L             ++ F+F  +          H+ +  +         
Sbjct: 333 SFDTETTS---LE-------VRSAKIVGFSFSVNGVDSYYVPIAHNYLGVEEQVSYECAK 382

Query: 65  DVTIV--------AHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEA 115
           +             HN  ++  +LK  F+  +    +   +++LA      +        
Sbjct: 383 EFIEYIFGCKYVIGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLLQSDALCNLDFLM 442

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            K  + +M   K+++ +  K    + L            +   EY   D     +++ +L
Sbjct: 443 KKYFNHEMIHYKDIVHK--KENFSQILI-----------QYACEYASEDAAACYQLYFKL 489

Query: 176 EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           + L  +         E         +   G  +D+     L         ++ +E+ +L 
Sbjct: 490 KGLVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELILESRERLHQISEEIFALA 549

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRA 283
                +    ++L T LF E  L     T++   T + VL+S     P   ++   R   
Sbjct: 550 -NKRFNLNSPQQLATILFEELNLQAGKKTKSGFSTSESVLNSLYDTHPIIPKILEYR-EF 607

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L E   +D                         Q      R +    Q  
Sbjct: 608 FKLYSTYIEPLSEHAKAD------------------------LQ-----HRIYTSFMQTG 638

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   I         +R   IA E   LV  D + IE R+LA  + ++  
Sbjct: 639 TSTGRLSSKNPNLQNIPVKTAQGRRIRRGFIAKENHLLVSLDYSQIELRLLAHFSEDEAM 698

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF    D+++ T  + F      + +++RAI K +                    G+ 
Sbjct: 699 IEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSIN--------------FGLIYGMG 741

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               +  +K       +++A+ + +                          +      V 
Sbjct: 742 PKKLSETLKIT-----FQEAKTYIQ-------------------------NYFTSFPTVK 771

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E      +   +     K ++ R R+       +  K   +                 R 
Sbjct: 772 EFLKNQEEFILEN-GYSKTLLGRMRKFDFEGVQEYQKAAFL-----------------RE 813

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCET 636
            +N                   I Q  + DI+   M   TKA  +  ++L VHDE++ E 
Sbjct: 814 GINA------------------IFQGSAADIIKMAMNAITKANLESKLLLQVHDELIFEA 855

Query: 637 P-DTDEFNASMLYHLMT 652
           P +  +  +  +  +M 
Sbjct: 856 PKEIAKKESEEIAKIME 872


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 97/542 (17%), Positives = 159/542 (29%), Gaps = 132/542 (24%)

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKR------LEPL-SSKEQELWYLDQTINDR 195
            D   P   EA  L        V   RE  +R      L  L +  E  L  +   +   
Sbjct: 443 LDDRGPLEAEAAPLGARQWVEVVHPIREALERRLTEDDLWRLATDVEIPLTRVLTDMEIH 502

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +D  +   +   +  ER +   E+     G + +     +L   LF   GL     T
Sbjct: 503 GVAIDRDVLAAIGTELATERDRALAEVRHYAGGEL-NPNSPRQLAVVLFERLGLPAGRKT 561

Query: 256 ETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +T      RVL S +   P    +   R      +      L   + +DGR+  T     
Sbjct: 562 KTGYSTDARVLESLRDAHPIVAAILRFRELDKLLST-FYEGLRSEIGADGRIHATF---- 616

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
                                      +Q +       +  P+   I          R  
Sbjct: 617 ---------------------------NQAVARTGRISSERPNLQNIPVRTDEGKRFRDA 649

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +A+EG  LV AD + IE RVLA ++G++  ++      D++    AR F V   +VT  
Sbjct: 650 FVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHTLVAARVFGVPAERVTPQ 709

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR++ K++   L Y   A     +A   G+                              
Sbjct: 710 QRSVAKMVTYGLSYGMEAY---GLAQRLGVPPAEA------------------------- 741

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           E +   +         L +    + +     G       RR   
Sbjct: 742 ----------------EGILADFFAAFP---GLRHYRDASVDAARAQGFTTTLLGRRRY- 781

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP   S              T  +   R+    G       Q ++ 
Sbjct: 782 --------------LPDLDSPNR-----------TVRQGAERQAMNAG------TQGLAA 810

Query: 608 DILAEGMMNATKAGYD----IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPL 663
           DI    ++    A       +VL VHDE+V E       +   L   +  + ++A  +PL
Sbjct: 811 DIFKIALVRLHAALSPTDGALVLQVHDEVVVEAVAERAHDVRALVEDVLEH-AFALRVPL 869

Query: 664 KA 665
           + 
Sbjct: 870 RV 871


>gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 912

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 111/654 (16%), Positives = 183/654 (27%), Gaps = 137/654 (20%)

Query: 38  DDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           D       D     ++P+    L   L +TD   +  ++      L A     + +   I
Sbjct: 359 DGSRAVAIDLT--EILPEDEAVLARFLSDTDRPKLVADAKGSWHALSA---RGLTLDGVI 413

Query: 95  CTLVLARSNGLPSALKAVGEAL-----KLSSQKMEEGKELIARFCKGET-----HECLYD 144
               LA     P       E L      +    ++E                       D
Sbjct: 414 ADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVDESGAQANDGPGESQSAFDLEALTSD 473

Query: 145 RNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                H  + R         V +         +   +  E  +      + D G  VD A
Sbjct: 474 AVPATHMASARRAAVLLPLQVVLDEQMAARDAVGLFTDLEMPVAATLTVMEDAGIAVDDA 533

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
           +       +D  R     E      G   +    ++L+  LF E  +     T+T     
Sbjct: 534 VLAARETELDA-RVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTD 592

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             +   L  +    F   +   R A+     +  L +A+ +DGR+  T            
Sbjct: 593 ADALAGLYAKTSHPFLEHLLEHRDAIKLRQTVEGLRKAIQADGRIHTT------------ 640

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGK 374
                                Q I       ++DP+   I +       +R      EG 
Sbjct: 641 -------------------FQQTIAATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGY 681

Query: 375 K-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE R++A ++G+Q  ++AF +GEDL+    A    +    VT  QR+  K
Sbjct: 682 DCLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIEVGDVTAQQRSHVK 741

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L Y         +A   G++    A L     A               E+  E A
Sbjct: 742 AMSYGLAYGLSTF---GLARQLGIDNAEAADLRNAYFAR------FGKVHDYLESVVEQA 792

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             D +  T   R ++      S   +      +A       G A    K+  + +     
Sbjct: 793 RRDGYTETMFGR-RRYLPDLTSDNRQRREMAERAALNAPIQGSAADIVKKAMIDVD---- 847

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                                                    G LTE   Q +S  IL   
Sbjct: 848 -----------------------------------------GALTE---QGLSSRIL--- 860

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666
                       L +HDE++ E    +      +L   M         +PL   
Sbjct: 861 ------------LQIHDELLIEVAPGEAAAVESLLKEQMGGAAE--LSVPLDVA 900


>gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 885

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 100/640 (15%), Positives = 195/640 (30%), Gaps = 144/640 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A    +    +        +    K+  E+ ++  + HN   +   L    N DI I  
Sbjct: 341 IAIKVQNEATCIIKIDCKEDI-LKFKDVFEDENIEKLGHNLKEDMITL---LNFDINIKN 396

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           +     +A        L +      +++              +         +      +
Sbjct: 397 YTHDSEIAEYI-----LNSTESNYDINNISNTYFSRGYKDLEELLGKGKKKIKFSDLKYD 451

Query: 153 AWRLFGEYCKGDVTVTREIF-KRLEPLS------SKEQELWYLDQTINDRGYCVDVALAH 205
               +  +    V   R++  +++            E  L  +  ++   G   D A+  
Sbjct: 452 ELCKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIGIRTDNAILD 511

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262
            +   +D +   L+ ++     G   +    +KL   LF + G  +   T+T       V
Sbjct: 512 EIGIDLDNKILNLENDIYEKA-GEEFNINSPKKLGLILFDKLGYPVLKKTKTGYSTNADV 570

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   KK       V   R + ++     +  L E +N                       
Sbjct: 571 LEKLKKDGDIIDDVLEYR-KLAKLKSTYVEGLKELINV---------------------- 607

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
                        H   +Q IT      +++P+   I         +R   ++SEG  LV
Sbjct: 608 --------ATGHIHSHFNQTITSTGRISSTNPNLQNIPIKTDEGKLIRKAFLSSEGCVLV 659

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA ++ ++  + AFE  +D++  T A+ F V    VT   R+  K +  
Sbjct: 660 DADYSQIELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNF 719

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y           S  GL+ N        N   +  ++         +    +  E++
Sbjct: 720 GIVYG---------ISDYGLSQN-------LNIPRKLAQEYIENYLLTYDGIKNYMTEEV 763

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
            +      VK                               I  +RR +P +        
Sbjct: 764 KLAKKNGYVK------------------------------TILNRRRYIPEL-------- 785

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                 S ++   R  G  R  +NT                   +Q  + DI+   M+  
Sbjct: 786 ------SAKNFNIRSFGE-RIAINTP------------------IQGSAADIIKIAMVKV 820

Query: 618 TKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
            +A         ++L +HDE++ +  + +      +  LM
Sbjct: 821 YRALKENNLKSKLILQIHDELIVDAREDE---VETVKKLM 857


>gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
 gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
          Length = 867

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 88/490 (17%), Positives = 157/490 (32%), Gaps = 69/490 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112
           +VLK  +E+ +V  V H+     T L       I I  +     +A        S  + +
Sbjct: 364 KVLKNLMEDDNVKKVIHDGKNFVTFLNK---NQIEIKGFDFDTAIAAYLIDSSKSKYEIL 420

Query: 113 GEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                 +      EG  + A  C             P   E  +        D     ++
Sbjct: 421 ELVNHYIGDNPNSEGSNIKAILCSY----------LPMVYEKLKENLHKENMD-----QL 465

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +         E  L Y+  ++   G+ ++  +   L      E  K  +E+  L      
Sbjct: 466 YY------EVEHPLIYVLSSMESIGFNINQGMLDELQTKFKKEIDKTQKEIYELAD-EEF 518

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF +  L +   T+T     Q VL           ++   R     ++ 
Sbjct: 519 NISSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLMNKHDIIPKIMYYRQITKINST 578

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L   ++ DGR+         + TGR S      QN+P                  
Sbjct: 579 Y-VEGLKNVVDEDGRIHSNFNQT-VTTTGRLSSTEPNLQNIPIKYE-------------- 622

Query: 349 SITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                      +   +R   I   E   LV  D + IE RVLA +AG++  + AFE   D
Sbjct: 623 -----------MGREIRKVFIPMEETDILVSCDYSQIELRVLAHIAGDENMIDAFEHHSD 671

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T +  F V   +VT   R+  K +   + Y   A +  +    T      +     
Sbjct: 672 IHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIVYGISAFSLAEDLKITKKEAEEY----- 726

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            +   E +   + +     EN  + A E  ++ T   R ++   +  S    +     + 
Sbjct: 727 MSIYLERYPKIKEYL----ENVVDEAKEKGYVLTILNR-RRFIPEIKSSNKIVKALGDRL 781

Query: 528 FEQTIENGKA 537
                  G A
Sbjct: 782 AMNAPIQGSA 791


>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 862

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 106/634 (16%), Positives = 200/634 (31%), Gaps = 157/634 (24%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
           ++    + LK+  ENT    + HN+    TVL     LDI I+ ++    +A      S 
Sbjct: 359 NEEKSKEYLKKLFENTS-EKIIHNAKNLFTVLSK---LDIDINNFVFDTEIAAYLIESSD 414

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            +   + L   +   E  +++            LY R K                     
Sbjct: 415 KEYTLKTL-FETYLHETYQDISQEIS---NLSNLYQRLKEK----------------IKE 454

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            ++   L  +   E  L  +   +   G+ VD      L +    E T   +E+  +  G
Sbjct: 455 LQMEDLLYKI---ELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQKEIYEMA-G 510

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF +  L +   T+T       VL   K   P   ++   R     
Sbjct: 511 EEFNISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIDKITYYRQLTKL 570

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           ++   +  L+  ++ DG                               R H   +Q +T 
Sbjct: 571 NSTY-VEGLIHVIDQDG-------------------------------RIHSSFNQTVTT 598

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                +++P+   I         +R   +   E   ++ AD + IE RVLA MA ++   
Sbjct: 599 TGRLSSTEPNLQNIPIKYEMGRAIRKVFVPNDEESLILSADYSQIELRVLAHMADDENMK 658

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            A+    D++  T +  FN+   QVTK++R+  K +   + Y  G   F  ++    ++ 
Sbjct: 659 TAYLEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVY--GISDF-ALSEDLKISK 715

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                            +A+ +       +P+  +++    T  +  K+ +         
Sbjct: 716 K----------------EAKQYIDTYFSRYPK--VKEYISSTIAKAEKELYVN------- 750

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                              I  +RR +P +                          +R  
Sbjct: 751 ------------------TIFNRRRFIPEITSSNK---------------IVKALGDRLA 777

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
           +N                    +Q  + DI+   M+N        K    ++L VHDEI+
Sbjct: 778 MNAP------------------IQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDEII 819

Query: 634 CETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
                 +      L    M S       +PL+ +
Sbjct: 820 LNVYKDELETVKELVKKEMESVID--FSVPLEVD 851


>gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
 gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
          Length = 874

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 151/417 (36%), Gaps = 56/417 (13%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++L  L   E  L  +   +   G+ +D          +D    +    +     G   
Sbjct: 470 QEKL--LYEIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVEYA-GYDF 526

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF++ GL  +  T+T       VL + +   P   ++   R + S+   
Sbjct: 527 NLNSPKQLGDVLFVKLGLPAKKKTKTGYSTNVDVLEALRPQHPIIGEILEYR-KLSKLKS 585

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             ++ L++ +  DGR+R T Q                               Q  T    
Sbjct: 586 TYVDGLLKVVGPDGRVRSTFQ-------------------------------QTETRTGR 614

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +++P+   I         +R    A  G KLV AD + IE RVLA +A +Q  + AF+
Sbjct: 615 ISSTEPNLQNIPIRTEEGSRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAAFQ 674

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +GED++ TT A+ F +    VT   R+  K +   + Y  GA +  +     G+ ++   
Sbjct: 675 SGEDIHATTAAQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGAFSLSQ---DIGVTVSEAD 731

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR-QKHSRVSELWN 522
             +K+  A           R   E+    A E+ ++ T   R +        ++V++ + 
Sbjct: 732 SYIKSYLAHY------AGVRKYMEDTIAFARENGYVKTLFGRRRYLPELAASNKVTQAFG 785

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRS 578
              +    T   G A    K   V +    + +     L+L     L+     +   
Sbjct: 786 --ERVARNTPIQGTAADIIKIAMVRVFERLRREGLRARLILQVHDELLVEAPDDEID 840



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 599 ENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLM 651
              +Q  + DI+   M+              ++L VHDE++ E PD +   A ++L   M
Sbjct: 791 NTPIQGTAADIIKIAMVRVFERLRREGLRARLILQVHDELLVEAPDDEIDRARAILKEEM 850

Query: 652 TSNPSWAKGLPLKAE 666
                 A  +PL+A+
Sbjct: 851 EHAI--ALKVPLEAD 863


>gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
 gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
          Length = 891

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/489 (17%), Positives = 154/489 (31%), Gaps = 116/489 (23%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            E LS  E  L ++   +   G  VDV    TL +    + T+  Q+      G   +  
Sbjct: 484 TELLSDIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVTQAQQDCWDAIGGDQINLG 543

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KL 291
             ++L+  LF   G+     T+T       +  +L  +    F   +   R A      +
Sbjct: 544 SPKQLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHPFLEALLRHRDAAKLRVTV 603

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L ++++ DGR+  T                                 Q I       +
Sbjct: 604 EGLQKSVSDDGRIHTT-------------------------------YLQTIAATGRLSS 632

Query: 352 SDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           ++P+   +         +R   +  +G   L+ AD + IE RV+A ++G+   ++AF +G
Sbjct: 633 TEPNLQNVPIRTEEGRRIRELFVVGDGYDALMSADYSQIEMRVMAHLSGDSGLIEAFRSG 692

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+    ++ F VAP  VT   R+  K M   L Y   A     ++    ++      L
Sbjct: 693 EDLHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYGLSAY---GLSKQLAISTEEAKGL 749

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           ++   A                                            R   +   L 
Sbjct: 750 MEGYFA--------------------------------------------RFGGVRAYLD 765

Query: 526 QAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
           +   +    G  A +  +RR +P +      N     +    +L     G+    +    
Sbjct: 766 EVVAEARGTGFTATMFGRRRYLPDLT---SDNRQRREMAERMALNAPIQGSAADIMKVAM 822

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
             + R  T  G  T  ++Q                        VHDE+V E    ++ + 
Sbjct: 823 IGVDRTLTEAGARTRILLQ------------------------VHDELVLEVAADEQADV 858

Query: 645 SMLY-HLMT 652
             +    M 
Sbjct: 859 ERIVREQMG 867


>gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 908

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 178/617 (28%), Gaps = 148/617 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L   D   + HN+     V++        +        LA     P       +AL L  
Sbjct: 395 LAAADRPKILHNAK---GVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEY 451

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-TVTREIFKRLE--- 176
                G+EL        T +           EA           V  +     +RLE   
Sbjct: 452 L----GRELA-----PATADGQLT--LGADDEAEAHALMVQARTVLDLGAAFGERLEQVG 500

Query: 177 ---PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
               L+  E     L  ++   G   D      + +       +  +E      G   + 
Sbjct: 501 ATGLLADVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAHD-AVGREFNL 559

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLK 290
              ++L+  LF E  L     T+T       +   L  Q      V   R R      + 
Sbjct: 560 GSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVT 619

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++++ +DGR+  T                                +Q +       
Sbjct: 620 VEGLIKSIATDGRIHTT-------------------------------FNQTVAATGRLS 648

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +++P+   I         +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +
Sbjct: 649 STEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTS 708

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GEDL+ T  ++ F V    V  + R   K M   L Y   A    +      ++      
Sbjct: 709 GEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIDAGEARA 765

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           L+ T                                               R   + + L
Sbjct: 766 LMDTYF--------------------------------------------ERFGGVRDYL 781

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
             A ++    G       RR                 LP                LN+  
Sbjct: 782 RHAVDEARATGYTETMLGRRRY---------------LP---------------DLNSDN 811

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638
           RQ  RE      L   I Q  + DI+   M+   +A         ++L VHDEIV E   
Sbjct: 812 RQ-RRETAERMALNAPI-QGTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAP 869

Query: 639 TDEFNASMLYHL-MTSN 654
            +      +    M   
Sbjct: 870 GERERVEEIVRREMADA 886


>gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 897

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 178/617 (28%), Gaps = 148/617 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L   D   + HN+     V++        +        LA     P       +AL L  
Sbjct: 384 LAAADRPKILHNAK---GVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEY 440

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-TVTREIFKRLE--- 176
                G+EL        T +           EA           V  +     +RLE   
Sbjct: 441 L----GRELA-----PATADGQLT--LGADDEAEAHALMVQARTVLDLGAAFGERLEQVG 489

Query: 177 ---PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
               L+  E     L  ++   G   D      + +       +  +E      G   + 
Sbjct: 490 ATGLLADVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAHD-AVGREFNL 548

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLK 290
              ++L+  LF E  L     T+T       +   L  Q      V   R R      + 
Sbjct: 549 GSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVT 608

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++++ +DGR+  T                                +Q +       
Sbjct: 609 VEGLIKSIATDGRIHTT-------------------------------FNQTVAATGRLS 637

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +++P+   I         +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +
Sbjct: 638 STEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTS 697

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GEDL+ T  ++ F V    V  + R   K M   L Y   A    +      ++      
Sbjct: 698 GEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIDAGEARA 754

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           L+ T                                               R   + + L
Sbjct: 755 LMDTYF--------------------------------------------ERFGGVRDYL 770

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
             A ++    G       RR                 LP                LN+  
Sbjct: 771 RHAVDEARATGYTETMLGRRRY---------------LP---------------DLNSDN 800

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638
           RQ  RE      L   I Q  + DI+   M+   +A         ++L VHDEIV E   
Sbjct: 801 RQ-RRETAERMALNAPI-QGTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAP 858

Query: 639 TDEFNASMLYHL-MTSN 654
            +      +    M   
Sbjct: 859 GERERVEEIVRREMADA 875


>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
 gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
          Length = 829

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/501 (16%), Positives = 160/501 (31%), Gaps = 130/501 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y+   +  RG          L + ++ + ++++ ++  L  G   +    ++L
Sbjct: 437 EVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELA-GEKFNLNSPKQL 495

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKL----TPQAIQVFNNRMRASRSAVLKLNTLV 295
              LF + GL     T +     + +   L       A+ + + R + S+     +  L+
Sbjct: 496 SKVLFEKLGLKPVKKTRSGYSTDVETLTTLALEGHEIAVHILDYR-KLSKLLSSFVKALL 554

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + ++                                  R H    Q  T      +++P+
Sbjct: 555 KRIDE-------------------------------TGRVHGNFIQTGTATGRLSSAEPN 583

Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              +     +S  VR  V A EG  LV AD + +E R+LA ++ ++  ++AF  GED++ 
Sbjct: 584 LQNLPVSDPLSLRVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHT 643

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+    Q+T  +R + K +   + Y         +A    + L      +    
Sbjct: 644 ETAKHLFHTR--QITDRERRVAKTVNFGIIYGMSP---HGLAERLSIPLQEAKDYI---- 694

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                + + QK  +V E    + +   +
Sbjct: 695 -------------------------------------ERYFQKFPKVREF---IEETVRE 714

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             + G    A  RR                 LP  +   +                    
Sbjct: 715 AYKKGFVETAFGRR---------------RPLPELKEKSFHKRSFGERA----------- 748

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNA-S 645
                     ++Q  + DI+   M+N      K    I+L VHDE+V E P+  E    +
Sbjct: 749 ------AVNTVIQGTAADIMKMAMVNLQPEAEKLNSYIILQVHDELVLEAPEGAEEEVAA 802

Query: 646 MLYHLMTSNPSWAKGLPLKAE 666
            +  +M    +    +PL  E
Sbjct: 803 KVKQVMEGAAN--LSVPLTVE 821


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 117/546 (21%), Positives = 197/546 (36%), Gaps = 103/546 (18%)

Query: 2   ATLFIDFETR--SPIDLTKCGICKYAEDV---CVILFAFGFDDHPVELWDCVHDPVMPQV 56
             LFID E    S  D+          D     + L   G +   + ++D    P   + 
Sbjct: 23  KYLFIDTEVAVKSFEDI----------DFFNDKIRLIQIG-NYSKIFVYDMFRIPQFSEH 71

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNL--DIPIHRWICTLVLARSNGLPSALKAVGE 114
           LKE LEN  V    HN  F+   LK  F +   I     I + +L+  +    +L A+  
Sbjct: 72  LKELLENKGVI--GHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLSEDSREKHSLSALS- 128

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +L+   +++ ++      K  T E L                 Y   DV V REIF  
Sbjct: 129 -YRLTDNHLDKSQQRSPWGIKNLTEEQLR----------------YAAKDVQVLREIFPV 171

Query: 175 L----------EPLSSKEQELWYLD--------------QTINDRGYCVDVALAHTLNQI 210
           L             + K  E + LD                I  RG  VD  L   + Q 
Sbjct: 172 LRDELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDMLQK 231

Query: 211 V--DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           V  D +R  +D       YG+       +K+  WL  + GL L     TT +  LSS   
Sbjct: 232 VSTDYQREYIDFVRR---YGVD--PFSPQKVTNWLTSKLGLKLP----TTQKGSLSSQDS 282

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
              + I     R      +  K+   ++ +    +                         
Sbjct: 283 ALRRYIDREEVRKLLHIRSEKKILDKLKEL----KAHLI--------------------- 317

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
                R + +  QI        +  P+ LQ I+  +R      EGKKL+VAD + IE R+
Sbjct: 318 ---NGRIYTQFKQIGAPTGRMASMRPN-LQNITRDLRVLFRPPEGKKLIVADYSQIELRI 373

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A    ++  +KAF  G+DL+  T +        Q+TKD+R + K +   L Y    ++ 
Sbjct: 374 AAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQMAKAINFGLIYGISPRSL 433

Query: 449 QKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + A  + G++++     +  +   E ++  +++   ++E   EH    ++       V 
Sbjct: 434 MEYARNSYGVDISLKDAQIFHSRFFEVYKGFKSWHDRVKEYLKEHNKMVVYTLLGRRMVV 493

Query: 508 KAWRQK 513
           + + + 
Sbjct: 494 RRFTEA 499


>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
 gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
          Length = 901

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/648 (14%), Positives = 185/648 (28%), Gaps = 152/648 (23%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +A    D P      D           L + L +     V H      +V     +    
Sbjct: 354 WALAIADGPGSAVALDLTDLSAADDTALSDWLSDPTRAKVVHGGK---SVWHELASRGYS 410

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +   +    LA     P   +      A +   +++              + +   D + 
Sbjct: 411 LEGVVFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDT--------SSDQGALDLSV 462

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY------LDQTINDRGYCVDV 201
               E  RL          +   +   L   S++            +   +   G  +DV
Sbjct: 463 GEDSEGGRLAVRAAAL-TDLAEVLRGELGDRSAEPLLTELELPLSAVLVHMERHGIAMDV 521

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                L Q      T        +  G   +    ++L+  LF +  +      +T    
Sbjct: 522 DYLRELEQHFGELVTGAAASAYEVI-GREVNLGSPKQLQEVLFDQLDMPKTKKIKTGYTT 580

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
             ++   L  +    F   +   R +      +  L++++  DGR+  T           
Sbjct: 581 DAAALADLFVKTEHPFLKFLLDHRDSTRLRQTVEGLLKSVADDGRIHTT----------- 629

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373
                                 Q I       +++P+   I         +R   +  +G
Sbjct: 630 --------------------FQQTIAATGRLSSTEPNLQNIPIRTEAGRRIRRAFVVGDG 669

Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+ AD + IE R++A ++G++  ++AF TGEDL+    +R F V  + VT   R+  
Sbjct: 670 YETLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKI 729

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M   L Y   +     +++   +++   + L                           
Sbjct: 730 KAMSYGLAYGLSSF---GLSNQLNIDVKEASKL--------------------------- 759

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYM 551
                                 +R   +   L    ++   NG  A I  +RR +P +  
Sbjct: 760 -----------------MEDYFTRFGGVRTYLAGVVDEARANGYTATIMGRRRYLPDL-- 800

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                                         T+  +  RE      L   I Q  + DI+ 
Sbjct: 801 ------------------------------TSDNRQRREMAERMALNAPI-QGSAADIIK 829

Query: 612 EGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652
             M+   K          ++L VHDE++ E    +    + L    M 
Sbjct: 830 VAMLGVEKEIAVRGLRSRLLLQVHDELILEVGHGELEELTTLVREQMG 877


>gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
 gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
          Length = 890

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+ ++     +       L+    L I +      ++LA               L
Sbjct: 371 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 428 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 486

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 487 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 545

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 546 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 604

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 605 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 633

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 634 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 693

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 694 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 743

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 744 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 766

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 767 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 809

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 810 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 853

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + +   +++  +M         +PL A+ 
Sbjct: 854 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 880


>gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
 gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
          Length = 883

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+ ++     +       L+    L I +      ++LA               L
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + +   +++  +M         +PL A+ 
Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873


>gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1]
          Length = 883

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+ ++     +       L+    L I +      ++LA               L
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + +   +++  +M         +PL A+ 
Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873


>gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424]
 gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424]
          Length = 873

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 107/647 (16%), Positives = 207/647 (31%), Gaps = 162/647 (25%)

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL------------PS 107
           ++ +V I + +++FE   ++     D    ++ +   L +A+ NG+             S
Sbjct: 338 KDENVYIFSEDNFFENKFVRNYLESDAEKVVYDYKKILYIAKRNGISDIAGNVFDVKIAS 397

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  V    +L          +I    + E +     R  P +     +   Y    V  
Sbjct: 398 YLLDVTVKTELDKIVFNTLGNIIK--SEEEIYGKGVKRTLPTN----EILYPYLAQVVKS 451

Query: 168 TREIFK----RLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             ++ +    RL+         + E ++  +   +   G  V       ++  +D     
Sbjct: 452 IFDLKEIQSARLKEENMDSLYKNIEVKVARVLANMEYEGIHVSKKALEDMSDELDERIKI 511

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAI 274
           L+  + +L  G   +    ++L   LF + GL     T+T       VL   +       
Sbjct: 512 LEASIHTLA-GSEFNIASPKQLGIVLFEDLGLPPVKKTKTGYSTSVEVLEQLQHSHEIIP 570

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +   R+    ++      + +                                + R  +
Sbjct: 571 LIMEYRVLTKLNSTYAKGLVKD--------------------------------ITRKGK 598

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-ASEGKKLVVADLAGIEARV 388
            H   +Q +T      + +P+   I         +R   I AS+ + ++  D + IE RV
Sbjct: 599 IHTRYEQTLTQTGRLSSVNPNLQNIPTRIEEGKKIRKAFIPASDDRVILSIDYSQIELRV 658

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA MA ++  + AF    D++  T +    V+  +VT   R   K +   + Y       
Sbjct: 659 LAHMAQDKGMIDAFTHDLDIHTKTASEVNGVSLDEVTPTMRREAKAVNFGIVYGISDF-- 716

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +++  G+        +       ++ +  +       +  E A E             
Sbjct: 717 -GLSNNLGITRKRAKEFID------KYLETFSGVNKYMTDIVEFAKE------------- 756

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                H  V  L+N                   +RR +P +     KN ++  L      
Sbjct: 757 -----HGYVETLYN-------------------RRRALPEI---NAKNKIVASL------ 783

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622
                 N R  +NT                   +Q  + DI+   M+NA      TK   
Sbjct: 784 ------NARLAMNTP------------------IQGTAADIIKLAMINAFDYIEKTKVDA 819

Query: 623 DIVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
            ++L VHDE++ +      DEF   M+  +M         + LKAE 
Sbjct: 820 KLLLQVHDELIFDVNKDVVDEFTIEMV-KIMEEAVE--LDVKLKAEA 863


>gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
 gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
          Length = 883

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+ ++     +       L+    L I +      ++LA               L
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + +   +++  +M         +PL A+ 
Sbjct: 847 ELDLIKTLVPKIMQQAAQ--LDVPLIADA 873


>gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
 gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
          Length = 883

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 103/629 (16%), Positives = 203/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+ ++     +       L+    L I +      ++LA               L
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           +     +L   +M         +PL A+ 
Sbjct: 847 ELDLIKILVPKIMQQAAQ--LDVPLIADA 873


>gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
 gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
          Length = 883

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+ ++     +       L+    L I +      ++LA               L
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + +   +++  +M         +PL A+ 
Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873


>gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 909

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 105/601 (17%), Positives = 174/601 (28%), Gaps = 127/601 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + +     V HN+      L+        I        LA     P       +AL +  
Sbjct: 396 ISDPSRPKVMHNAK---DALRVFPEHGWEIAGVTMDTALAAYLVKPGRRSFALDALSIEY 452

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 +EL      G+      ++ + +   +           +    E    +E L  
Sbjct: 453 LH----RELAPAAADGQLAFGTDEQAEADALMSQARAVLDLGEALGGKLEEVGAVELLHD 508

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E     L   +   G   D A    + Q       +  +E  +   G   +    ++L+
Sbjct: 509 VELPTSLLLARMERHGIAADRAHLEAMEQQFAGAVQQAVKEAHA-AVGHEFNLGSPKQLQ 567

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
              F E  L     T+T       +   L  Q        M   R               
Sbjct: 568 EVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPVIMLRHR--------------E 613

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
             RLR T++  G  +T            +    R H    Q +       ++DP+   + 
Sbjct: 614 QARLRSTVE--GLIKT------------IAADGRIHTTFSQTVAATGRLSSTDPNLQNVP 659

Query: 361 -----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   +R   +  EG + L+ AD + IE RV+A ++ +   ++AF +GEDL+ T  +
Sbjct: 660 VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDLGLIEAFTSGEDLHTTVAS 719

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F+V  + V  + R   K M   L Y   A    +     G+       L+ T      
Sbjct: 720 QVFSVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEPAEARVLMDTYF---- 772

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                                    R   + + L +  ++    
Sbjct: 773 ----------------------------------------ERFGGVRDYLRRVVDEARAT 792

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G       RR                 LP                LN+  RQ  RE    
Sbjct: 793 GYTATMLGRRRY---------------LP---------------DLNSDNRQ-RRESAER 821

Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY 648
             L   I Q  + DI+   M+N  +A         ++L VHDEIV E    +      L 
Sbjct: 822 MALNAPI-QGTAADIVKVAMLNVDRALTDAKLSSRLLLQVHDEIVLEVAPGEREQVETLV 880

Query: 649 H 649
            
Sbjct: 881 R 881


>gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1]
 gi|737486|prf||1922368A DNA polymerase I
          Length = 921

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 102/548 (18%), Positives = 165/548 (30%), Gaps = 139/548 (25%)

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------- 181
           L A               +   RE W            +T  + + L PL          
Sbjct: 466 LYAYLLDPANTNMPVVAKRYLDRE-WPA---DAPTRAAITGHLVRELPPLLDDARRKMYD 521

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E+ L  +   +  RG  VD     TL+    V    L+ ++     G     R  ++L
Sbjct: 522 EMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYA-GEEFHIRSPKQL 580

Query: 240 KTWLFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +T L+ +  L     T+ T QR      L   +   P    V   R              
Sbjct: 581 ETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFREL------------ 628

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                   +LRGT                 P    P   R H    Q         + +P
Sbjct: 629 -------DKLRGT------------YLDPIPNLVNPHTGRLHTTFAQTAVATGRLSSLNP 669

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I     +   +R   IA +G  L+ AD + IE R+LA +A +    +AF  G D++
Sbjct: 670 NLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIH 729

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A+   +  A V  +QR   K +   + Y   A    ++++  G+            
Sbjct: 730 RRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSA---HRLSNDLGI------------ 774

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                + +A  F       +P   I      T        + + H  V  L+        
Sbjct: 775 ----PYAEAATFIEIYFATYP--GIRRYINHTL------DFGRTHGYVETLY-------- 814

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                       +RR VP +  +                            N   R+   
Sbjct: 815 -----------GRRRYVPGLSSR----------------------------NRVQREAEE 835

Query: 590 EYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETP-DTDEFNA 644
              Y        +Q  + DI+   M          G  ++L VHDE++ E P D  E  A
Sbjct: 836 RLAY-----NMPIQGTAADIMKLAMVQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVA 890

Query: 645 SMLYHLMT 652
           ++   +M 
Sbjct: 891 ALTKKVME 898


>gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE]
 gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE]
          Length = 903

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 109/623 (17%), Positives = 178/623 (28%), Gaps = 137/623 (21%)

Query: 54  PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           P  L EA        + +     V HN+      L+        +        LA     
Sbjct: 374 PAELDEADEQALAAWIADPRRPKVMHNAK---NALRVFPEQGWRLEGVSMDTALAAYLVK 430

Query: 106 PSALKAVGEALKLSSQKMEEGKELIAR-FCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           P       +AL +       G+EL       G+      DR + +   A           
Sbjct: 431 PGRRSFALDALAVEYL----GRELAPAPSADGQLAFGADDRAEADALMAQARAVLDLGEA 486

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             V  E       L   E     L   +   G   D +    + Q       +  +E  +
Sbjct: 487 FAVRLEEVGATGLLHDMELPTSILLARLERHGIAADRSHLEGMEQQFAGAVQQAVKEAHA 546

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              G   +    ++L+  LF E  L     T+T       +   L  Q        M   
Sbjct: 547 -AVGREFNLGSPKQLQEVLFGELALPKTKKTKTGFTTDADALAWLAAQTEHELPVIMLRH 605

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R       T+   + + G                            +  R H   +Q + 
Sbjct: 606 REQAKLRVTVEGLIKTIG----------------------------QDGRIHTTFNQTVA 637

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398
                 ++DP+   I         +R   +  EG + L+ AD + IE RV+A ++ +   
Sbjct: 638 ATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGL 697

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y   A    +      ++
Sbjct: 698 IEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNID 754

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 L+ T                                               R  
Sbjct: 755 AGEARGLMDTYF--------------------------------------------QRFG 770

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            + + LH+  E+    G       RR                 LP               
Sbjct: 771 GVRDYLHRVVEEARATGYTETILGRRRY---------------LP--------------- 800

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
            LN+  RQ  RE      L   I Q  + DI+   M++  +A         ++L VHDEI
Sbjct: 801 DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLHVDRALTEARLTSRMLLQVHDEI 858

Query: 633 VCETPDTDEFNASMLYHL-MTSN 654
           V E    +      +    M++ 
Sbjct: 859 VLEIAAGEREQVEEILRREMSTA 881


>gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
 gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
          Length = 880

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 90/507 (17%), Positives = 164/507 (32%), Gaps = 134/507 (26%)

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           DV   R    +L  L+  E  L  +   +  +G  VD+       + + +   KL  E+ 
Sbjct: 471 DVLTER---NQLSLLNDVELPLSDVLADMEYQGLTVDLKELENQTKDMSLRIDKLRTEIL 527

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNR 280
            L  G+  +    ++L   LF   GL     T+T       VL++     P    +   R
Sbjct: 528 LLA-GVDFNVDSPKQLGDVLFDTLGLPNGKKTKTGYSTGIEVLNNLIDHHPIINLIIEYR 586

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     L  + E++  D R+                                   +
Sbjct: 587 QLT-KLYSTYLIGIKESVFEDNRVHTI-------------------------------YN 614

Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +T      + +P+   I         +R   I       V AD + IE RVLA MA  
Sbjct: 615 QALTLTGRLSSLEPNLQNIPIRTEEGRQIRKLFIPEPDSYFVGADYSQIELRVLAAMADV 674

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   +AFE  +D++  T  + F+V    V  +QR   K +   + Y  G  +  +     
Sbjct: 675 KNLKQAFEEDQDIHTVTAQKVFHV--DTVDSEQRRRAKAVNFGIIYGIGPWSLSE---DI 729

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+ +    + +  +   E + + +++   + E                        + H 
Sbjct: 730 GVTVKEAENFI--SRYLEVYPEIKDYMTNIVEFA----------------------KTHG 765

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V  L N                   +RR +P +              S +    R+ G 
Sbjct: 766 YVETLLN-------------------RRRYIPEL--------------SSKVFNLREFG- 791

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
            R+ LN                    +Q  + DI+   M++        K    ++L VH
Sbjct: 792 KRTSLNAP------------------IQGTAADIIKLAMIDLHNYLKDNKKKSKLILQVH 833

Query: 630 DEIVCET--PDTDEFNASMLYHLMTSN 654
           DE++ E    + DE    ++ ++M   
Sbjct: 834 DELIVEVVKEELDEMK-EVIPNIMEKA 859


>gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
 gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
          Length = 798

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 88/514 (17%), Positives = 161/514 (31%), Gaps = 135/514 (26%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            LE     E  + Y    + + G   D  +   +   +  E  ++ +++++   G   + 
Sbjct: 390 LLEVYLGMELPVAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKIKTF-VGYDINL 448

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP-------QAIQVFNNRMRASRS 286
              ++L+ +LF E G+     T+T       S + + P           +   R  A   
Sbjct: 449 NSPKQLQVFLFEELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLL 508

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +   L  L + + +DGR+  +                                 Q  T  
Sbjct: 509 STYALP-LKDYVLADGRIHSSF-------------------------------RQTGTAT 536

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I         +R   I  EG   V  D + IE R+LA + G++   +A
Sbjct: 537 GRLSSVNPNMQNIPMKGKWGVKLREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEA 596

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           +   ED++  T +  F VAP +V    R + K +   + Y         ++  TG++   
Sbjct: 597 YRNNEDIHTKTASGIFGVAPEKVDSGMRRLAKAVNFGILYGLSPF---GLSRDTGVSQKE 653

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                      +  + +   + +V    
Sbjct: 654 AK-----------------------------------------KFIEKYFATYPKVKGF- 671

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             + +  ++T E G A     R+                          R +   RS   
Sbjct: 672 --IEKIAKETKEKGYAETLAGRK--------------------------RFIREIRSKNR 703

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD--IVLTVHDEIVCE 635
           T   +  R  T         +Q  + DI+   M+          YD  +VL VHDE+V E
Sbjct: 704 TVAMRGERIATNVP------MQGSAADIIKLAMVECQAVLDDKEYDALVVLQVHDELVFE 757

Query: 636 T--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
               D DEF+   +  +M         +PL   G
Sbjct: 758 VLDKDIDEFS-DRVRSIMEGVME--LDVPLVVNG 788


>gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
          Length = 857

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 90/530 (16%), Positives = 168/530 (31%), Gaps = 80/530 (15%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           +   D  V        P+    L   L+N DVT+   NS          +   +    W 
Sbjct: 345 YAVQDTTVY-------PLEDADLVRLLDNADVTLDVFNSA-------PLYAKAMAAGGWG 390

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            ++V    +G  +A      A K    ++    +  A F               ++ +A 
Sbjct: 391 SSIVW---DGKLAAYLLDASASKYQISELIPAYKAAAAF------------TCTDYPDAG 435

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           RL   + +    +T      L   +  E  L  +   +   G  VD          +  E
Sbjct: 436 RLADLFARMKAEITACGEDAL--YNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREE 493

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQ 272
             ++   +   T     +    ++L   LF   GL     T+        + + L   P 
Sbjct: 494 LEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLREYPL 553

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R    +     +  L++ +  DG                              
Sbjct: 554 VEDVLQYR-AYQKLNSTYVEGLLKVIGEDG------------------------------ 582

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q         + +P+   I     +   +R+  +A  G  LV AD + IE R
Sbjct: 583 -RIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLVDADYSQIELR 641

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA + G++   +AF  GED++ +T A+ + +  ++VT   R+  K +   + Y  GA +
Sbjct: 642 ILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYS 701

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G+ +      +K   A      A        +     A  + ++ T   R +
Sbjct: 702 LS---KDIGVTVKEADAFLKNYLA------AFPSVSGYMDKTIADAKANGYVSTLFGR-R 751

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
           +   +  S    +     +    T   G A    K   V +    +D+  
Sbjct: 752 RTLPELASTNFNVRASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKM 801


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/543 (14%), Positives = 176/543 (32%), Gaps = 63/543 (11%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-AL 109
             +   LK+  EN  +  + HN  +++ VL+      I I  +   ++++        + 
Sbjct: 195 EEILSYLKKIFENEHLLKIGHNIKYDKLVLQRY---GIIIRGFEDIMLMSYVLDSGRYSH 251

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDRNKPNHREAWRLFGEY-----CKG 163
                A K     +   KE++    +     +    R +    E   +  +       K 
Sbjct: 252 DIANIAKKWLFYDLITRKEMLKTGKRSISIDQISNSRIQEYVVEKSNVILQLWLLLRAKL 311

Query: 164 DVTVTREIFKRL-EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                  +++RL +P+         +   +   G  +D  L   ++  +  +   L++++
Sbjct: 312 IAEKLLHVYERLDKPMID-------IVAQMETTGIQIDRQLLAQVSSEISKDLLCLEEKI 364

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRM 281
            +L  G   +    ++L   LF +        T+    +      +++            
Sbjct: 365 HNLA-GEKFNISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQDLEQIN----------- 412

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                              +  +   L++   S+         P     R  R H     
Sbjct: 413 ----------------CQDNILIEHILEWRRFSKIKSTYADSLPNHINQRTQRVHTFYSL 456

Query: 342 IITHLPTSITSDPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      + +P+         +   +R   IA   KKL+ AD + IE R+LA +A   
Sbjct: 457 ASTMTGRLASLEPNLQNIPVKTNLGKKIRRAFIAPPTKKLISADYSQIELRILAHVAQIN 516

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF+   D++    +  F V   +V+   R   K +  ++ Y        ++A+   
Sbjct: 517 PLYQAFKNSLDIHTLVASEIFGVKIEEVSSHMRQHAKTINFSIIYGISPF---RLANQLK 573

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     ++       + D         E     A ++ ++ T   R +  + + +S 
Sbjct: 574 IKRSEATDYIQ------RYFDRFPGIHEYIEKTKNFARKNSYVETIFGR-RIYYDEINSP 626

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDVGN 575
              + N   +A       G A    +R  + +   ++  K +  ++L     LV+     
Sbjct: 627 KVSIRNLNERAAINAPIQGSAADITRRAMILVHKSIECHKLSTKMLLQIHDELVFEAPEE 686

Query: 576 NRS 578
              
Sbjct: 687 EIE 689


>gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 957

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 94/520 (18%), Positives = 160/520 (30%), Gaps = 118/520 (22%)

Query: 166 TVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
                ++  L P              E  +  +   +   G  +D A+   L++      
Sbjct: 528 DAVLRLWTVLAPRLEGTPTQAVYEELELPMVPVLARMEAAGVRIDRAVLTELSRDFGATL 587

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
            +L+ E+  L  G        +++   LF   GL     T +      ++  +    A  
Sbjct: 588 ARLETEIHEL-GGGPFQIGSPKQIGDVLFGRLGLPGGRRTPSGQWATGATILEELAAAGH 646

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
               R+   R      +T  +A+               S   R               R 
Sbjct: 647 ALPGRLLDWRRTSKLKSTYADAL--------------LSAADRG------------TDRV 680

Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           H       T      +SDP    I         +R+  +A+EG +++ AD + +E R+LA
Sbjct: 681 HTTFSLAATTTGRLSSSDPGLHNIPIRTEEGRRIRAAFVAAEGHRILSADYSQVELRLLA 740

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +A      +AF  G D++  T +  F V    V  + R   K +   + Y   A     
Sbjct: 741 HIADVPRMREAFAEGVDIHAATASDMFGVPVGAVPGELRRRAKTINFGIVYGISAF---G 797

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A   G+     A                 F     E  P   I D   GT     K   
Sbjct: 798 LADRLGIGRQEAAE----------------FIARYFERFP--GIRDYVEGT-----KTFC 834

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R+ H  V  L+  +                         Y      N+     S R    
Sbjct: 835 RE-HGFVRTLFGRVCH-----------------------YPGITSGNV-----SER---- 861

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
             +G  R  +N   +         G   + I +A+ R    EG +  +     ++L VHD
Sbjct: 862 --MGVERQAVNAPIQ---------GTAADIIRRAMIR---MEGALADSGLSARMLLQVHD 907

Query: 631 EIVCETPDTD-EFNASMLYHLM--TSNPSWAKGLPLKAEG 667
           E+V E  + +    A ++  +M   + P     +PL  E 
Sbjct: 908 ELVFEVAEAECADTARVVSDVMAGAAAPDIDLAVPLVVEA 947


>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
 gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
          Length = 904

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 96/587 (16%), Positives = 182/587 (31%), Gaps = 93/587 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------PVMPQVLKEALENT-DVT 67
           D    G+   A    ++ F+F FD          HD       V  +  K A+E      
Sbjct: 344 DCETNGLD--ALQARLVGFSFCFDGIHGYYVPISHDYLGVGKQVDTKDAKRAIEKIFSHP 401

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           IV HN  F+  + KA FNL  P      +++LA      S +       K   +KM    
Sbjct: 402 IVGHNLKFDLMIAKANFNL-TPKREIQDSMLLAYLLDSASMMGLDILMEKFFGKKMIAYD 460

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181
           E++              + K           EY   D      + +RL+           
Sbjct: 461 EVVK-------------KGKTFGDVDLERASEYASEDAVACFCLQERLKEELQAKRCAHL 507

Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E     +   +  +G  +DV     L + +    ++ ++E+ +       +  
Sbjct: 508 LELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLSEALSQKEEEIFAHAK-QNFNIN 566

Query: 235 CLEKLKTWLFLET---GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +    GL       +T ++ L   K   P    +   R    +      
Sbjct: 567 SPKQLSRVLFDDLKLRGLRRVKGGYSTDEKTLEELKDSHPIIPILMEYR-EIFKLKNTYA 625

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             +++    + ++  +                                 Q  T      +
Sbjct: 626 EPILKLRTKENKIHTSFS-------------------------------QTGTTTGRLSS 654

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
             P+   I         +R   IA  GKKL+  D + IE R+LA  + +Q  L AF    
Sbjct: 655 RSPNLQNIPVRTEAGKQIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLDAFRKDL 714

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D+++ T    F     +  K++R I K +   L Y  G    +K++ T  ++       +
Sbjct: 715 DIHLRTAQMVFG----EDAKNKRHIAKTINFGLIYGMGT---RKLSQTLKISNTEAKEYI 767

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                   +  +    R       E  +   +  T     +    +       + +   +
Sbjct: 768 D------RYFASFPTVRQFLRTEEEQILRRGYAQTLLGHRRYFNFKGVGDF--MRSNFLR 819

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                I  G A    K   +  +Y     + + ++L     L+++  
Sbjct: 820 EGINAIFQGSAADLMKL-SMNKIYQTFQNSGVKMLLQVHDELIFQSP 865


>gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
          Length = 883

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L + LE+ ++     +       L+    LDI +      ++LA               L
Sbjct: 364 LNKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + +   +++  +M         +PL A+ 
Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873


>gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29]
 gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase
 gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29]
          Length = 607

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 112/584 (19%), Positives = 197/584 (33%), Gaps = 85/584 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHN 72
           +D    G+  Y+ D    L  FG       +       ++  + + EAL+  +   V  N
Sbjct: 40  VDTETTGLDIYSADFRCRLVQFGTQTESW-VLPIEDLEMLGREEVHEALDVLNKI-VMQN 97

Query: 73  SYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLS--------SQK 122
           + ++  VL  CF + +     + + T +LA+    P    A G    L          ++
Sbjct: 98  ASYDLQVLDRCFGIKMESLWPKILDTQILAKLVD-PRPFGAGGFGHSLEELIAEFISKEQ 156

Query: 123 MEEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            E  K L+A+  K          +     H E    +  Y   D   T  I   L PL  
Sbjct: 157 AENVKGLMAKLAKEHKTTKAKIWSTIDLYHPE----YLTYAGMDTVFTARICSALAPLVP 212

Query: 181 K--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E ++  +   I+ RG+ +DV  +  L      E+   +  L +     +  
Sbjct: 213 DVSRPLVPYEHKISEICSYIDRRGFLLDVEYSQQLADKWLGEQQVWEAVLLNEYG--IEK 270

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRSA- 287
               E +    F E G      T++  ++V     +       +   +      A +   
Sbjct: 271 VNATEDVAE-AFEELGHKFTAFTDSGKRKVDKGFYADMIAAGGEKAHLAEMVQEAKKLGK 329

Query: 288 --VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                + T ++  +S+ R    +  L A RT R S    P Q LP    +          
Sbjct: 330 WRTSWVQTFLDTRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASDWT---------- 378

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                             VR C +A  G  +   D    E RVLA ++G++  ++AF+ G
Sbjct: 379 ------------------VRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQAFKDG 420

Query: 406 EDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            DL++ T   +F      +TKD  +R   K +     Y GGA      A  TG+++ T  
Sbjct: 421 ADLHLMTARAAFG---DHITKDDPERKYAKTVNFGRVYGGGANTV---AEQTGISIETAK 474

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            +V        ++ A              A  + +I     R     R   SR     N 
Sbjct: 475 QVVDG------FDKAYPGVTRYSRKLANEAKRNGYIINPMGRRLPVDR---SRTYSALNY 525

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             Q+  + +     I   +    P + +      +   LP+ ++
Sbjct: 526 QIQSTSRDVTCKALIRLHEAGFTPYLRLPIHDEIVA-SLPAEKA 568


>gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 477

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 92/488 (18%), Positives = 145/488 (29%), Gaps = 121/488 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           LS  E     L   +   G   D      + Q       +  +E  +   G   +    +
Sbjct: 74  LSDVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHA-AVGHEFNLGSPK 132

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L+  LF E GL     T+T       +   L  Q        M   R            
Sbjct: 133 QLQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIMLRHR------------ 180

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                RLR T++  G  +T            +    R H   +Q +       ++DP+  
Sbjct: 181 --EQARLRSTVE--GLIKT------------ISPGGRIHTTFNQTVAATGRLSSTDPNLQ 224

Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   +  EG + L+ AD + IE RV+A ++ +   ++AF +GEDL+ T
Sbjct: 225 NIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTT 284

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             ++ F VA ++V  + R   K M   L Y   A          G+  +           
Sbjct: 285 VASQVFGVAKSEVDPEMRRKIKAMSYGLAYGLSAFGLSG---QLGIGADEA--------- 332

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                              ++       R   + + L +  E+ 
Sbjct: 333 -----------------------------------RRLMDTFFERFGGVRDYLQRVVEEA 357

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G       RR                 LP                L +  RQ  RE 
Sbjct: 358 RAIGYTETMLGRRRY---------------LP---------------DLTSDNRQ-RREM 386

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                L   I Q  + DI+   M+    A         ++L VHDEIV E    +     
Sbjct: 387 AERMALNAPI-QGTAADIVKIAMLKVDAALTAGELSSRMLLQVHDEIVLEIAPGERERVE 445

Query: 646 MLYHL-MT 652
            L    M 
Sbjct: 446 ELVRREMA 453


>gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
 gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
          Length = 883

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L + LE+ ++     +       L+    LDI +      ++LA               L
Sbjct: 364 LNKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + +   +++  +M         +PL A+ 
Sbjct: 847 ELDLIKTLVPKIMQQAAQ--LDVPLIADA 873


>gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 879

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 89/502 (17%), Positives = 156/502 (31%), Gaps = 125/502 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E         +   G  V  A     +  +      L ++  +   G   +    +
Sbjct: 476 LDDIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYA-AIGHEVNLGSPK 534

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L+  LF E  L     T++      ++   L   A   F + +   R A  KL  +++A
Sbjct: 535 QLQEVLFDELQLPKTRKTKSGYTTDAAALADLQESAPHPFLDLLLKHREAT-KLKQIIDA 593

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++              + TG                R H    Q  +      ++DP+  
Sbjct: 594 LD--------------TATGP-------------DGRIHTTYVQTGSQTGRLSSTDPNLQ 626

Query: 358 QII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I      S  +R+     EG   L+ AD + IE R++A ++G+   ++AF +GEDL+  
Sbjct: 627 NIPIRTEESRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSGEDLHRF 686

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             AR F V PA+VT   R   K M   L Y   A     ++    +  +           
Sbjct: 687 VGARVFGVEPAEVTPAMRTKVKAMSYGLVYGLSAF---GLSKQLRIEQSEA--------- 734

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                              KK   +  +R   + + L  + EQ 
Sbjct: 735 -----------------------------------KKLMLEYFARFGAVRDYLRGSVEQA 759

Query: 532 IENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            ++G    I  +RR  P +                                T+  ++ RE
Sbjct: 760 RQDGYTETIFGRRRPFPDL--------------------------------TSMNRVLRE 787

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNA 644
                 L   I Q  + DI+   +    +          ++L +HDE+V E    +    
Sbjct: 788 NAERAALNAPI-QGSAADIMKVALFRIREELASAGLRSRVLLQIHDELVVEIAPGEWDAV 846

Query: 645 SMLY-HLMTSNPSWAKGLPLKA 665
             +    M         +PL  
Sbjct: 847 ERIVRARMADAAE--LSVPLDV 866


>gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
 gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
          Length = 883

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 103/629 (16%), Positives = 206/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+ ++     +       L+    LDI +      ++LA               L
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNARDIGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  +++ 
Sbjct: 421 ANSYQESYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   K  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLKYQSPIVDDILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTATGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + +   +++  +M         +PL A+ 
Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 106/568 (18%), Positives = 199/568 (35%), Gaps = 75/568 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D    G+  Y++D    L  FG  +    +      P   +  ++AL N     V HN+ 
Sbjct: 41  DTETTGLDIYSDDFRCRLVQFGTPNEAW-VIPVELGPRYEEEARQALRNVK-GFVLHNAS 98

Query: 75  FERTVLKACFNLDI--PIHRWICTLVLARSNGLPSALKAVGEALKLSS--------QKME 124
           ++  V++    + +     +   T +LA     P   K  G   KL             E
Sbjct: 99  YDLQVIERTLGIPMEDMWPKVTDTKILAHLVD-PRPFKEGGIGHKLEELVKHYIDANVAE 157

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--- 181
             K L+A   +       +   K      +  +  Y   D  +   + ++L PL      
Sbjct: 158 NVKTLMATLAREYKTTKAHIWTKVELTNPY--YQLYSGMDPILAARLLQKLIPLVPAVSQ 215

Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E +L  +   +  RG+ +DV  +  L++ +  ++     + + L    + +    
Sbjct: 216 DLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADILYG--LENVNSP 273

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++   L +  G+ +++ TET   +V    L    K      +      +  +     + 
Sbjct: 274 IQVAEAL-MRRGVKIKERTETGQPKVDKVLLDRLIKEGDPLAEAITEAKKWGKWEKTWVR 332

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             +++ +S  R    +  L A RT R S    P Q LP                      
Sbjct: 333 KFLDSRDSKDRCHANINPLQA-RTARMSITGIPAQTLPSGDW------------------ 373

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      VR C +A EG+ +   D    E RVLA ++G++  ++AF+ G DL++ T
Sbjct: 374 ----------LVRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAFKDGADLHLMT 423

Query: 413 YARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              ++     ++TKD  +R   K +     Y GGA   + +A  TGL++     +V    
Sbjct: 424 ARAAW--PDREITKDSPERKYAKTVNFGRVYGGGA---KTVAEQTGLDMEAAKQVVDG-- 476

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               ++ A    + +       A ++  I T   R         SR     N L Q+  +
Sbjct: 477 ----FDRAYPGVQRLSAKLQREASQNGHIVTPKGR---RLPVDPSRAYSALNYLIQSTSR 529

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNL 558
            +     I   +      + +      L
Sbjct: 530 DVTGEALIRLHEAGFTKYLRLPIHDEIL 557


>gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
 gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
          Length = 885

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/500 (15%), Positives = 140/500 (28%), Gaps = 132/500 (26%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +   G  +D      L          + + +  L  G   +    +++   L
Sbjct: 490 PLVPVLAHMERIGALLDTDTLQALGSRTAQNIADISERIYELA-GEKFNIDSPQQVSHIL 548

Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           F   GL     T    +T  +VL            +   R  A       ++ L +   +
Sbjct: 549 FDVIGLPPRKRTSRGYSTDAKVLEDLSSEHQLPGLILEYRELAKIMGTY-IDALPKLRGA 607

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DGRL                               H   ++ +T      +S+P+   I 
Sbjct: 608 DGRL-------------------------------HTSFNETVTTTGRLSSSNPNLQNIP 636

Query: 361 -----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   +R C I  S     V AD + IE R+LA ++G+   + AF +G D +  T A
Sbjct: 637 VRTEFGRHIRECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFHSATAA 696

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           R F V   +VT + R+  K +   + Y   A    +   +  +       ++        
Sbjct: 697 RVFGVPVEEVTPELRSRAKAVNFGIVYGQQAFGLSQ---SLRIPFGEAQAMIDRYFTAYP 753

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
              A                                             L     Q  E 
Sbjct: 754 VVRA--------------------------------------------YLDNIVAQAHEK 769

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTY 593
           G A+    R+                 +P  R+   +      R  +N            
Sbjct: 770 GYALTMFGRK---------------RHIPELRAHNAQQRAFGERIAMNHPM--------- 805

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SM 646
                    Q  + DI+ + M+              +++ VHDE+    P        ++
Sbjct: 806 ---------QGTAADIIKKAMVEVDARLRHEFPNAKMMIQVHDELDLSVPADQVGEVSAL 856

Query: 647 LYHLMTSNPSWAKGLPLKAE 666
           L  +M +       +PL  +
Sbjct: 857 LKEVMENVVE--LDVPLIVD 874


>gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 880

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 108/630 (17%), Positives = 194/630 (30%), Gaps = 142/630 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114
           L   L++ +   V H      + LKA  N  + +   +    ++     P   +      
Sbjct: 359 LARWLQDPEEAKVLHEFK---SALKALHNRGLGLEGVVDDTSISGYLIQPDRRSYDLAEL 415

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           A       +        +      G+T E        +      L   + K    +  + 
Sbjct: 416 AQVHLKISLAAAAAQSGQLELDLSGDTDEVAATALVQHAAVVHALSKHFEKELAEIKADA 475

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                 L++ E  +  +   +   G  V           +        ++  +   G   
Sbjct: 476 L-----LTTLELPVARVLAQMELTGIFVSTDRMDEQLADLTKVIENAQEQAFA-AIGHEV 529

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK- 290
           +    ++L+T LF E GL      ++      +S K L  +    F  ++ A R +    
Sbjct: 530 NLGSPKQLQTVLFDELGLPKTKKIKSGYTTDAASLKGLLEKTGHEFLVQLMAHRESSKLA 589

Query: 291 --LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             + TL +++  D R+  T                                 Q I     
Sbjct: 590 QMVETLKKSVADDARIHTT-------------------------------YAQNIAATGR 618

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF 402
             +++P+   I         VRS  + SEG + L+ AD + IE R++A ++G+Q  ++A+
Sbjct: 619 ISSNNPNLQNIPVRSEEGRRVRSIFMVSEGYECLLSADYSQIEMRIMAHLSGDQALIQAY 678

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + GEDL+    AR FNV PA+VT   R+  K M   L Y   +     ++    ++++  
Sbjct: 679 KDGEDLHRFVGARIFNVEPAEVTSAMRSKVKAMSYGLAYGLTSF---GLSKQLEISVDEA 735

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L                                             +  + R   +  
Sbjct: 736 RTL--------------------------------------------MKDYYDRFGAVRA 751

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            L    +Q   +G       RR                 LP                  T
Sbjct: 752 YLDGVRDQARVDGYTATIEGRRRY---------------LPDL----------------T 780

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET 636
           +T +  RE      L   I Q  + DI+   M+  +           ++L VHDE+V E 
Sbjct: 781 STNRQAREAAERIALNSPI-QGSAADIIKRAMLGVSAELASQGLKSRMLLQVHDELVLEV 839

Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            P   E    ++   M S       +PL  
Sbjct: 840 APGEREAVEKLVIEQMGSAAE--LSVPLDV 867


>gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 906

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 88/498 (17%), Positives = 147/498 (29%), Gaps = 129/498 (25%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                 + L  +   E     L   +   G   D      + Q       +  +E  +  
Sbjct: 495 AEVGAAELLHEM---ELPTSELLARMERAGIAADRDHLEAMEQQFAGAVQQAVKEAHA-A 550

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRA 283
            G   +    ++L+   F E  L     T+T       +   L  Q      V   R R 
Sbjct: 551 VGHEFNLGSPKQLQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHELPVIMLRHRE 610

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                + +  LV+ + +DGR+                               H    QI+
Sbjct: 611 QAKLRVTVEGLVKTIGADGRV-------------------------------HTSFSQIV 639

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQW 397
                  ++DP+   +         +R   +  EG + L+ AD + IE RV+A ++ ++ 
Sbjct: 640 AATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEG 699

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF +GEDL+ T  ++ F V   +V  + R   K M   L Y   A    +      +
Sbjct: 700 LIEAFLSGEDLHTTVASQVFGVERGEVDPEMRRKIKAMSYGLAYGLSAFGLSQ---QLNI 756

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +      L++T                                               R 
Sbjct: 757 DPGEARGLMETFF--------------------------------------------ERF 772

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             + + L +  E+    G       RR                 LP              
Sbjct: 773 GGVRDYLQRVVEEARATGYTQTVLGRRRY---------------LP-------------- 803

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
             LN+  R + RE      L   I Q  + DI+   M+   KA         ++L VHDE
Sbjct: 804 -DLNSDNR-MRREAAERMALNAPI-QGTAADIVKVAMLRVDKAITEAGLKSRMLLQVHDE 860

Query: 632 IVCETPDTDEFNASMLYH 649
           IV E    +      L  
Sbjct: 861 IVLEIAPGERKKVEELVR 878


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 105/570 (18%), Positives = 196/570 (34%), Gaps = 79/570 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D    G+  Y++     L  FG  +    +      P   +  ++AL N     V HN+ 
Sbjct: 41  DTETTGLDIYSDGFRCRLVQFGTPNEAW-VIPVELGPRYEEEARQALRNVK-GFVLHNAS 98

Query: 75  FERTVLKACFNLDI--PIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--------ME 124
           ++  V++    + +     +   T +LA     P   K  G   KL             E
Sbjct: 99  YDLQVIERTLGIPMEDMWPKVTDTKILAHLVD-PRPFKEGGIGHKLEELVKHYIDAPVAE 157

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRL--FGEYCKGDVTVTREIFKRLEPLSSK- 181
             K L+A   +       +   K      W    +  Y   D  +   + ++L PL    
Sbjct: 158 NVKTLMATLAREYKTTKAHIWTK----VEWTNPYYQLYAGMDPILAARLLQKLIPLVPSV 213

Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E +L  +   +  RG+ +DV  +  L++ +  ++     + + L    + +  
Sbjct: 214 SQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADILYG--LENVN 271

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++   L +  G+ + + TE    +V    L    K      +  +   +  +     
Sbjct: 272 SPIQVAEAL-MRRGVKITERTEGGQPKVDKVLLDRLIKEGDPLAEAISEAKKWGKWEKTW 330

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +   +++ +S  R   ++  L A RT R S    P Q LP                    
Sbjct: 331 VRKFLDSRDSKDRCHASINPLQA-RTARMSITGIPAQTLPSGDW---------------- 373

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        VR C +A EG+ +   D    E RVLA ++G++  ++AF  G DL++
Sbjct: 374 ------------LVRRCFLADEGELMASVDYQAQELRVLAALSGDRTMIQAFRDGADLHL 421

Query: 411 TTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            T   ++     ++TKD  +R   K +     Y GGA   + +A  TGL++     +V  
Sbjct: 422 MTARAAW--PDREITKDSPERKYAKTVNFGRVYGGGA---KTVAEQTGLDMEAAKQVVDG 476

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 ++ A    + +       A +   I T   R         SR     N L Q+ 
Sbjct: 477 ------FDRAYPGVQKLSRKLQMEASQKGHIITPVGR---RLPVDPSRAYSALNYLIQSS 527

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
            + +     I   +      + +      L
Sbjct: 528 SRDVTGRALIRLHEAGFTRYLRLPIHDEIL 557


>gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 317

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 120/373 (32%), Gaps = 94/373 (25%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
           +++ G ++         P    P   R H    Q +T      ++DP+   I        
Sbjct: 16  IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGR 75

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +A  G K++  D + IE R++A ++G+Q  L AF  G+D++  T A    V   
Sbjct: 76  RIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPID 135

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           QV+ +QR   K +   L Y   A     +A   G+                    A+ + 
Sbjct: 136 QVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGE----------------AQEYM 176

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E +P               V +      SR ++L               + I  R+
Sbjct: 177 DKYFERYP--------------GVMQYMEDTRSRAAQL------------GYVETIFGRR 210

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                              LP                   T+R   R            +
Sbjct: 211 LH-----------------LP-----------------EITSRNAMRRKAAERAAINAPM 236

Query: 603 QAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN 654
           Q  + DI+ + M+               +++ VHDE+V E  ++        +  LM S 
Sbjct: 237 QGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESA 296

Query: 655 PSWAKGLPLKAEG 667
              A  +PL AE 
Sbjct: 297 AELA--VPLVAEA 307


>gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
 gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
          Length = 890

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L + LE+ ++     +       L+    LDI +      ++LA               L
Sbjct: 371 LNKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVL 427

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 428 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 486

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 487 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 545

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 546 KQLGVILFEKLKLAPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 604

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 605 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 633

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 634 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 693

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 694 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 743

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 744 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 766

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 767 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 809

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 810 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 853

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           + +   +++  +M         +PL A+ 
Sbjct: 854 ELDLIKTLVPKIMQQAAQ--LDVPLIADA 880


>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
 gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
 gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
          Length = 871

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 89/572 (15%), Positives = 167/572 (29%), Gaps = 150/572 (26%)

Query: 127 KELIARFCKGETHECLYDRNKPNHREAW---RLFGEYC---KGDVTVTREIFKRL----- 175
             +          E     N  +  E      L GE       +V V  +I+ +L     
Sbjct: 407 TAIAEYLINPSKKEY----NLKDAAEEMLLLDLTGEDNDIKIKEVYVMDKIYNKLKDKIK 462

Query: 176 -----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                E     E  L  +  ++   G+ V+      +     VE  K+  E+ ++  G  
Sbjct: 463 EYDMDELYYKVELPLIEVLSSMESEGFKVEKNKLQQIGDKFTVEIAKVKDEIYNMA-GEE 521

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF +  L +   T+T       VL       P   +V   R       
Sbjct: 522 FNISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLMDKHPIIEKVVYYRQL----- 576

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
               +T VE +                              +    + H   +Q +T   
Sbjct: 577 TKLYSTYVEGLKP---------------------------VIDVDEKIHSSFNQTVTTTG 609

Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +++P+   I         +R   +   +   ++ AD + IE RVLA +A ++  + A
Sbjct: 610 RLSSTEPNLQNIPIKNEMGREIRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINA 669

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+   D++  T +  F V   +VT   R+  K +   + Y     +    A    ++   
Sbjct: 670 FKHHSDIHTKTASEVFRVPIEEVTSRMRSNAKAVNFGIVYGISDFSL---AQDIKVSKKE 726

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               + T    E + + +              +ED+ +                      
Sbjct: 727 AKEYIDT--YFERYPNVK------------KYLEDIVVTAK------------------- 753

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                 +  TI N + II        +V                           R  +N
Sbjct: 754 ---KNMYVNTIMNRRRIIPEIASSNKIV----------------------KGFGERLAMN 788

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCE 635
           T                   +Q  + D++   M+N        K    ++L VHDE++  
Sbjct: 789 TP------------------IQGSAADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILN 830

Query: 636 TPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
               +      L  L M         +PL+ +
Sbjct: 831 VHKDELEKVKELVKLEMEEVME--LKVPLEVD 860


>gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
 gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
          Length = 912

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 189/578 (32%), Gaps = 100/578 (17%)

Query: 33  FAFGFDDHPVELWDCVH-----DPVMPQ-VLKEALENT-DVTIVAHNSYFERTVLKACFN 85
           F+F FD          H        +     K AL+      ++ HN  F+ +++     
Sbjct: 365 FSFCFDGENAYYVPVGHHYLGVGCQLTHTQAKIALKRIFTYPLIGHNLKFDLSLIFHTLE 424

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           L+        +++L       + +    + LK  +  M     ++A+           D 
Sbjct: 425 LEH-TGEIYDSMILGWLYDSIAPIGLDKQMLKWFNHTMISFDSVVAK-----------DE 472

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-------------SSKEQELWYLDQTI 192
           N    +       +Y   D   T  ++ RLE +             +  E     +   +
Sbjct: 473 N--FSQVNIAAATQYAAEDAIATFRLYHRLEEVFYKREWSSILELANKLEYPFIKVLLAM 530

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD+ L  +L +      ++L  ++  L  G   +    ++L   LF   GL   
Sbjct: 531 ECEGIKVDIPLLESLKEKASEHISQLSAQIFELC-GETFNLNSPQQLAHILFNRLGLKAG 589

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
              +   +T +R L +     P    + + R      +                +   L+
Sbjct: 590 RSVKGGLSTDERTLLAIIDAHPVIALILDYREVNKLKSTY--------------IEPLLR 635

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364
           F  A+                   R +    Q  T      +  P+   I         +
Sbjct: 636 FGSAN----------------DKHRIYTSFLQSGTATGRLSSKSPNLQNIPVRREEGRKI 679

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   I+ EG  L+  D + IE R+LA    +   +++F+  +D++  T AR F V  A  
Sbjct: 680 RQAFISKEGHSLISIDYSQIELRLLAHFCKDSSLIESFKQDKDIHFETAARLFGVELAA- 738

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
              +RAI K +   L Y  G+   +K+A T  ++L    + +++  A   +   +NF   
Sbjct: 739 --QKRAIAKSINFGLIYGMGS---KKLAQTLQISLKEAKNYIESYFAL--FPTIKNFLNA 791

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK-- 542
            +E   E+      +G             H R  +  N         +  G   I +   
Sbjct: 792 QKEFLLENGYSQTLLG-------------HRRYFDFKNATDFMKANFLREGINSIFQGSA 838

Query: 543 ----RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
               +  +  ++ +   ++  ++L     L++      
Sbjct: 839 ADLIKLSMCEIHKRYGHSDFKMLLQVHDELIFEAPQEK 876


>gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
 gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
          Length = 859

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 136/423 (32%), Gaps = 50/423 (11%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            ++ E  L  +   +   G  VD          +  E  ++   +E        +    +
Sbjct: 459 YNNIEFPLAQVLADMTRTGILVDREGIEAFGVQLRQELDQVLTRIEMEAGTSDFNPNSPK 518

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L T LF   GL     T+        + +KL    +                       
Sbjct: 519 QLGTLLFDTMGLPHGKKTKNGWSTDAETLEKLRDIPL----------------------- 555

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                 +   LQ+    +           + +    R H   +Q         + +P+  
Sbjct: 556 ------VEDILQYRACQKLNSTYVEGL-LKVIGEDGRIHTRFNQTEARTGRLSSDNPNLQ 608

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I         +R+  +A  G  LV AD + IE R+LA + G+    +AF +G D++ +T
Sbjct: 609 NIPIRTEMGSKLRAYFVAKPGCVLVDADYSQIELRILAHVTGDAHMQEAFLSGADIHRST 668

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            A+ +N+ P  VT   R+  K +   + Y  GA +        G+++      ++T  A 
Sbjct: 669 AAKIYNIRPEDVTPRLRSSAKAINFGIMYGKGAYSLS---KDIGVSVKEAEAFLQTYLA- 724

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                         E     A +  ++ T   R ++A  + +S    +     +    T 
Sbjct: 725 -----TFPNIDGYMEKTIADARQCGYVSTLFGR-RRALPELNSNNHNIRASGERMARNTP 778

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
             G A    K   V +    +++     L+L     L+                Q+ RE 
Sbjct: 779 IQGTAADVIKLAMVRVWRRLRNEKMESRLILTVHDELIVEAPEAEAE----KAAQILREE 834

Query: 592 TYG 594
             G
Sbjct: 835 MEG 837


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 114/689 (16%), Positives = 223/689 (32%), Gaps = 122/689 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQV--------LKEALENTD 65
           D    G+  Y +   ++  +         +     H+   PQ+        LK  L +  
Sbjct: 142 DTETTGVDVYQD--VIVGVSLTLPRAGYHVYIPVAHNNAGPQLRRSYVLNGLKRYLTDPT 199

Query: 66  VTIVAHNSYFERTVL-KACFNLDIPIHRWICTLVLARSNGLPSALKAV----GEALKLSS 120
           V  V HN+ F+  +L +    +    H  +  + +   N    ALK +    G+      
Sbjct: 200 VGKVLHNAKFDIHMLLRHGMRMRGLAHDTMIAMKILNENEPSVALKNLATRYGKFFGFDG 259

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR------ 174
           +     ++L  + C                     +   Y   D  +T E++K       
Sbjct: 260 ESHT-FEDLFGKAC--------------FADVPLDMALIYAAKDTHLTWELYKWQMEHLT 304

Query: 175 -----LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                L+     E  L  +   +   G+ VD A A    + +  E  ++++ L +    +
Sbjct: 305 KREDLLKLYRELENPLVDICVEMEQTGFAVDTAFAQEYGEELKGELAEVEKTLVAHFGEI 364

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +     +L   L+   GL       T  +  L   K   P    +   R         
Sbjct: 365 NFN--SPAQLAEVLYDRLGLPQGKERSTDVKT-LKGLKGRHPGIEPLLKYREL-----TK 416

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            L T VEA+                           P  L    R H   +Q+ T     
Sbjct: 417 LLGTYVEAL---------------------------PHQLKADGRIHGSFNQVATVTGRF 449

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            + +P+   +     R  ++A +G  L+  D + IE R+LA M+G+    + +  GEDLY
Sbjct: 450 ASREPNLQNLPPRARR-LIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREPYLKGEDLY 508

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  AR F V  ++   D     K+M++ L       +   ++   G+++      ++  
Sbjct: 509 STLAARVFKVPLSE-CGDGSKYRKMMKIGLLAVMYGTSMFTLSEQLGISVEEAHRFIEGF 567

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              +E+ D   F +   E   ++     ++ T   R ++    +   +   +++L     
Sbjct: 568 Y--DEYPDVYAFIKDTWEFVKKNE----YVATLYGRKRRFPGHREQAIV--YDQLAAKIC 619

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           + +   +            +    +K               +D+      +     ++ R
Sbjct: 620 KALGTERV----------PLDFWSNKGI------------PKDLKRKFGAVKGEVERVRR 657

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEF-NA 644
                       +Q  + DI+   ++N        G+ I  TVHDE +    DT      
Sbjct: 658 M------AVNARIQGTAADIMKRALLNLYEYTRARGWKINGTVHDEALLLVRDTITLAEV 711

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             L   M         +P+K +     R+
Sbjct: 712 EELEACMVRAAE--LEVPVKVDTEIMARW 738


>gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331]
          Length = 903

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 113/628 (17%), Positives = 184/628 (29%), Gaps = 147/628 (23%)

Query: 54  PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           P  L EA        L +     V HN+      L+        +        LA     
Sbjct: 374 PAELAEADEQALAAWLADPGQPKVLHNAK---NALRVLPEQGWRLEGISMDTALAAYLVK 430

Query: 106 PSALKAVGEALKLSSQKMEEGKELIAR-FCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           P       +AL +       G+EL       G+      DR + +   A          D
Sbjct: 431 PGRRSFALDALAVEYL----GRELAPAPASDGQLAFGADDRAEADALMAQARAVLDLG-D 485

Query: 165 VTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
              TR + +    E L   E     +   +   G   D A   ++ Q       +  +E 
Sbjct: 486 AFTTR-LKEVGATELLYDMELPTSIMLARLERHGIAADRAHLESMEQQFAGAVQQAVKEA 544

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNN 279
            +   G   +    ++L+  LF E  L     T+T       +   L  Q      V   
Sbjct: 545 HA-AVGREFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTEHELPVIML 603

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R R      + +  L++ + +DGR+  T                                
Sbjct: 604 RHREQAKLRVTVEGLIKTIAADGRIHTT-------------------------------F 632

Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMA 393
           +Q +       ++DP+   I         +R   +  EG + L+ AD + IE RV+A ++
Sbjct: 633 NQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLS 692

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y   A    +   
Sbjct: 693 EDAGLIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ--- 749

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +       L                                                
Sbjct: 750 QLNIEAGEARGL--------------------------------------------MDTY 765

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
             R   + + LH+  E+    G       RR                 LP          
Sbjct: 766 FLRFGGVRDYLHRVVEEARSTGYTETILGRRRY---------------LP---------- 800

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
                 LN+  RQ  RE      L   I Q  + DI+   M+   +A         ++L 
Sbjct: 801 -----DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLKVDRALTEAELTSRMLLQ 853

Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSN 654
           VHDEIV E    +      +    M++ 
Sbjct: 854 VHDEIVLEIAKGEREQVEEILRREMSTA 881


>gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
 gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
          Length = 883

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/629 (16%), Positives = 204/629 (32%), Gaps = 137/629 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+ ++     +       L+    LDI +      ++LA               L
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNARDIGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  +++ 
Sbjct: 421 ANSYQESYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I         +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++  T  + F ++   +VT   R   K +   + Y         +A   G++        
Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                    ++A+NF     E +P                            ++ + +  
Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759

Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           A +   E G A  I  +RR +P ++ K           + RS         R+ +N+   
Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
                           +Q  + DI+   M+         K    ++L +HDE++ + P  
Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           +     +L   +M         +PL A+ 
Sbjct: 847 ELDLIKILVPKIMQQAAQ--LDVPLIADA 873


>gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4]
 gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4]
          Length = 899

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 107/646 (16%), Positives = 191/646 (29%), Gaps = 140/646 (21%)

Query: 45  WDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
            D     P   Q L+  L +  V    H++        A    D+ +      + LA   
Sbjct: 356 VDLAAIGPDDEQALQGWLGDDAVHKAVHDAK---AATHALMGRDLRLGGVTMDVALAAYL 412

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEY 160
             P   +        +   +++ E +    +     E  +    +   +           
Sbjct: 413 VRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEVDDAEAAQRAADAAATRARAVVD 472

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
               + V  E       ++  E  L  +   +   G  VD +  + L         +  +
Sbjct: 473 LAERLDVELEQVHGATLMAEMELPLVPVLARMESIGIAVDASALNGLRDDFADRGRQAAE 532

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-----AIQ 275
              +   G   +    ++L+  LF   G+     T+T       + ++L  +       +
Sbjct: 533 AAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDAKALEELLAKETGDTPGR 592

Query: 276 VFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            F   +   R        +  L++ +  D R+  T                         
Sbjct: 593 AFLEALLLHRETTKMRTTVEGLIKTIGDDRRIHTTF------------------------ 628

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEA 386
                  +Q +       ++DP+   I         +R   +  EG   L+ AD + IE 
Sbjct: 629 -------NQTVAATGRLSSTDPNLQNIPVRTEDGRRIRGSFVVGEGYDCLLTADYSQIEM 681

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RV+A ++G+   ++AF TGEDL+    +R+F V   QVT + R   K M   L Y   A 
Sbjct: 682 RVMAHLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTPELRRRVKAMSYGLAYGLSAF 741

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +A+  G++                                                
Sbjct: 742 ---GLAAQLGISQGEA-------------------------------------------- 754

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           ++      SR   + + L    EQ  ++G       RR                 LP   
Sbjct: 755 REQMEAYFSRFGGVRDYLQAVVEQARKDGYTETLFGRRRY---------------LPE-- 797

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620
                        LN+  R L RE      L   I Q  + DI+   M+           
Sbjct: 798 -------------LNSDNR-LKRENAERAALNAPI-QGTAADIIKAAMLKVDADLTARGL 842

Query: 621 GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
              ++L VHDE+V E  P   +    ++   M S       +PL  
Sbjct: 843 KSRLLLQVHDELVLEVAPGELDEVRGLVVDRMYSAIE--LDVPLDV 886


>gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
 gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
          Length = 875

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/504 (15%), Positives = 147/504 (29%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             +  L  +   +   G  VD      L      E  +L   +  +  G   +    ++L
Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIA-GEEFNLDSPKQL 534

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF   GL      +        VL            V   R  A   +   ++ L  
Sbjct: 535 GHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTY-IDALPR 593

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               DG                               R H   ++ +T      +S+P+ 
Sbjct: 594 MRADDG-------------------------------RVHTCFNETVTTTGRLSSSEPNL 622

Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R C +   +G K + AD + IE R+LA ++ ++  + AF +G D + 
Sbjct: 623 QNIPVRTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHA 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +R F +    VT + R+  K +   + Y   A    +   + G+             
Sbjct: 683 ATASRVFGLPVEDVTPELRSRAKAVNFGIVYGQQAFGLSQ---SLGI------------- 726

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               + +A+       E +P                             +   L +   +
Sbjct: 727 ---PFGEAKEMIERYFEAYP----------------------------GVRAYLDRTIAE 755

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTR 589
             E G A     R+                 +P  ++      G   R+ +N        
Sbjct: 756 AKEKGYAETMFGRK---------------RHIPELKAANATQRGFGERTAMNHPM----- 795

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                        Q  + DI+   M    +          ++L VHDE+    P+ + E 
Sbjct: 796 -------------QGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEE 842

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
            ++++  +M         +PL  +
Sbjct: 843 LSAIVKDVMEHIVD--LRVPLDVD 864


>gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
          Length = 913

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 99/670 (14%), Positives = 198/670 (29%), Gaps = 163/670 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVLKEALENT-DVT 67
           D    G+    ++  ++ F+F FD          H      + +  Q  K A+       
Sbjct: 350 DCESDGLD--LQEAQLVGFSFCFDGKNAYYVPVGHRYLGVGNQLNLQEAKSAISRIFTHP 407

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           ++ HN  F+ +++     L+  I +   +++L+      + +    + LK  +  M    
Sbjct: 408 LIGHNLKFDFSLIYRTLGLEH-IGKIYDSMILSWLYDSIAPVGLDKQMLKWFNHTMISFD 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLSSKEQ--- 183
            ++ +         +                +Y   D   T +++ RLE     +E    
Sbjct: 467 SVVPKGENFSQVNII-------------TATQYAAEDAAATFKLYHRLEDEFHKREWGGI 513

Query: 184 ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                        +   +   G  VD+ L   L         +L Q++  L  G   +  
Sbjct: 514 LELAQNLEYPFIKVLMDMELEGIRVDIGLLEILKDKSSEHIAELSQKIYDLC-GETFNLN 572

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF   GL      +   +T ++ L +     P    + + R      +    
Sbjct: 573 SPQQLAHILFENLGLKPGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYR-----ESNKLK 627

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +T +E +   GR                              R H    Q  T      +
Sbjct: 628 STYIEPLLRLGRTN-------------------------ETHRIHTSFLQNGTATGRLSS 662

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
             P+   I         +R   I+ EG  L+  D + IE R+LA    +   +++F   +
Sbjct: 663 KSPNLQNIPVRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDK 722

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T AR F     Q    +R I K +   L                G+     +  +
Sbjct: 723 DIHFETAARLFG---EQEAMQKRFIAKSINFGLI--------------YGMGSKKLSQTL 765

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +        + A+ +                                   + +  N   +
Sbjct: 766 QIP-----LKQAKEYIESYF-------------------------ALFPTIKDFLNAQEE 795

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
              +     + ++  +R      Y               R+  +      R  +N+    
Sbjct: 796 FLLEN-GYSQTLLGHRR------YFDFK-----------RATDFMKANFLREGINS---- 833

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----IVLTVHDEIVCETP-DTDE 641
                         I Q  + D++   M    K        ++L VHDE++ E P +  E
Sbjct: 834 --------------IFQGSAADLIKLSMCEIHKRYAKSDLKMLLQVHDELIFEAPSERAE 879

Query: 642 FNASMLYHLM 651
             A  +  +M
Sbjct: 880 NYAKEVADIM 889


>gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
 gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
          Length = 789

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 150/435 (34%), Gaps = 51/435 (11%)

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFK--RLEPLSSKEQELWYLDQ--TINDRGYCVDVA 202
           K +  E   +F +          +  K  +L  L  KE EL  +D    +   G  ++  
Sbjct: 352 KKHKDEQIEVFVKRVSSLAKSEFKKLKENKLVKL-YKEIELPVIDILFEMEKHGIKINEK 410

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
             + +N  ++    ++++++         +    ++L   LF + GL     T+T     
Sbjct: 411 KVYEINDELEENLKEIERKIFDYCK-EEFNLNSPKQLSFILFEKLGLEPAKKTKTGFSTS 469

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
             + ++L                    K    VE ++        L++   S+       
Sbjct: 470 EEALQEL------------------KFKNPGHVELID------YILKYRELSKLKSTYT- 504

Query: 323 VFPPQN-LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376
                N +    R H    Q  T      + +P+   I         +R C  A +G + 
Sbjct: 505 -LNLLNYMADDKRIHTTFKQTGTATGRISSINPNLQNIPVGSIYGKRIRECFEAEKGYRF 563

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V  D + IE R+LA ++ ++  + AF   ED++  T    F V   +V    R + K + 
Sbjct: 564 VSFDYSQIELRILASLSNDENLIDAFINDEDIHNKTAKEIFGV--EEVDPKHRRLAKAVN 621

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y         +A  TG+  +     ++       +   +N+   + +   E    +
Sbjct: 622 FGIIYGLSPY---GLARDTGITQSEAKVFIE--RYFNLYPGVKNYIDSIIKEAKEKGYTE 676

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDK 555
             +G      K+  +  +S    L     +        G A    K   + +  Y++K +
Sbjct: 677 TILGR-----KRFIKDINSANRMLKQRAERIAINAPIQGSAADIIKLAMINIYKYLQKTQ 731

Query: 556 NNLILMLPSGRSLVY 570
            ++ ++L     L++
Sbjct: 732 IDVKMILQIHDELLF 746


>gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
 gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
          Length = 932

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/491 (16%), Positives = 142/491 (28%), Gaps = 126/491 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L Y+ + +   G  +D        Q +  E     Q     + G   +    +
Sbjct: 529 LLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFD-SIGREVNLSSPK 587

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL---NTL 294
           +L+  LF +  L     T+T       + ++L       F   +   R  +  L     L
Sbjct: 588 QLQEVLFTQLQLPKTKKTKTGYTTDAKALEELARYNPHPFLEALLYHRDRIKLLQIVRNL 647

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            E +  DGR+  T                                 Q +       + DP
Sbjct: 648 RERVADDGRIHTT-------------------------------FGQTVAATGRLSSIDP 676

Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   +  +    L+ AD + IE R++A ++G++  L AF +GEDL
Sbjct: 677 NLQNIPARTVDGQKIREAFVPQKPYTALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDL 736

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +  A  + V P +VT  QR+  K     L Y   A     +A+   ++      L+ T
Sbjct: 737 HRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAY---GLAAQLNISQRDAKQLMDT 793

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                          R  ++   L+Q  
Sbjct: 794 Y--------------------------------------------FERFGKVREYLNQIV 809

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                 G     + RR                 LP  RS       N R           
Sbjct: 810 ATATRVGYTETMQGRRRY---------------LPELRSTNRNVADNARRA--------- 845

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEF 642
                        +Q  + D++   M+         +    ++L VHDE+V E    +  
Sbjct: 846 --------ALNAPIQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETE 897

Query: 643 NASMLYHLMTS 653
               L     +
Sbjct: 898 RLEALVRQAMT 908


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/649 (16%), Positives = 178/649 (27%), Gaps = 149/649 (22%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           A+G     ++                A  +      A     + T L+A    +      
Sbjct: 341 AYGSGTGRIDSIAVAAPDGAGGGHGAAFIDPTTLTEA-----DETALRAWLGDESRPKAV 395

Query: 94  ICT-----LVLARSNGLPSAL--KAVGEALKLSSQKMEEGKELIA-RFCKGETHECLYDR 145
                    + A+   L       A+   L +  Q+    ++L+     +    E     
Sbjct: 396 HDAKGPMLALWAQGMELRGLTCDTALAAYLAMPGQRTFLLEDLVRAYLQRELRGEAETGG 455

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDR 195
                 +                RE+   LE               E  L  +   +   
Sbjct: 456 QASLFDDEDDDTARELGLRALAVRELADALEAFLEPRGGTHLMREVELPLVTVLAELERA 515

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G   D      L         +  +   +   G   +    ++L+  LF+   L     T
Sbjct: 516 GIAADGDYFSGLEAEFGAAVKQAVEAAHA-AVGEQFNLGSPKQLQEILFVRLNLPKTKKT 574

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLG 312
           +T       +   L  Q        M   R        +  LV+ +  DGR+  T     
Sbjct: 575 KTGYTTDADALAWLAAQTEHELPTIMLRHRDQAKLKVTVEGLVKEIADDGRIHTT----- 629

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
                                      +QI+       +  P+   I         +R  
Sbjct: 630 --------------------------FNQIVAATGRLSSEKPNLQNIPIRTVEGRRIRQG 663

Query: 368 VIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            +   G   L+ AD + IE R++A ++G++  + AFE+G D + TT AR F++ P QVT 
Sbjct: 664 FVVGPGYETLLTADYSQIELRIMAHLSGDESLIAAFESGHDFHKTTAARVFDIEPEQVTG 723

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + RA  K M   L Y         +A    + +     L +                   
Sbjct: 724 EMRAKIKAMNYGLAYGLSDF---GLAGQLNIPVQEAKALKE------------------- 761

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                                    +       + + L+    Q  ++G       RR  
Sbjct: 762 -------------------------EYFEEFGGVRDFLNAIVAQARQDGYTETIMGRRRY 796

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                          LP                LN+  RQ  RE      L   I Q  +
Sbjct: 797 ---------------LP---------------DLNSDNRQ-RREMAERMALNAPI-QGSA 824

Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            DI+   M+N   A      G  ++L VHDE+V E    +      L  
Sbjct: 825 ADIIKVAMLNVQSAVKEAALGSRMLLQVHDELVFEVAPGELETLRELVT 873


>gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
 gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
          Length = 887

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/409 (14%), Positives = 132/409 (32%), Gaps = 47/409 (11%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VD    + +        ++++  + +   G   +    ++L
Sbjct: 486 DIELPLAIVLAKMEISGIKVDRNRLNQMQSEFTERLSEIETNIYNEA-GEEFNLNSPKQL 544

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF +  L +   T+T     +   +KL  ++                          
Sbjct: 545 GVVLFEKLKLPIIKKTKTGYSTAVDVLEKLQGESPI------------------------ 580

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
               +   L +   S+                  + H    Q +T      + DP+   I
Sbjct: 581 ----IDNILNYRTLSKIKSTYVDGLLKVIHTTDEKVHTTYVQTLTQTGRLSSIDPNLQNI 636

Query: 360 I-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   + A EG  ++ +D + IE RVLA + G+Q   +AF+ GED++ TT 
Sbjct: 637 PVRIEEGRKIRQAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDIHATTA 696

Query: 414 ARSFN-VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            + F     ++VT + R   K +   + Y        +     G++       ++T    
Sbjct: 697 VKIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQ---NIGISRKDAKKFIET--YF 751

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           +E+   + +     +   E    +          ++     +S    L +   +    T 
Sbjct: 752 KEFPGVKKYIDESVQLAKEQGYVETIAHR-----RRYLPDINSSSFNLRSFAERTAMNTP 806

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580
             G A    K   + +    + +N    ++L     L++       + +
Sbjct: 807 IQGSAADIIKIAMIDMENELEKRNLKSRMLLQVHDELIFEVPDEEMTLM 855


>gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 908

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/635 (14%), Positives = 194/635 (30%), Gaps = 147/635 (23%)

Query: 46  DCVHDPVMPQVLKE----ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           D     V+ +  K+       +  +  + H+   ER +        + ++     ++LA 
Sbjct: 372 DLTARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNIYSMS---GVGLNNIYFDIMLAS 428

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
               P+  K+      +S + ++    + +   KG       +    +  EA   +    
Sbjct: 429 YCLNPA--KSHC-ITDMSKEYLDFTAGVGSYAWKGSKKSSFAN----SSIEAGAKYANSI 481

Query: 162 KGDVTVTREIF------KRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
              V    +IF      K+L  L    E  L  +   +   G  VD+      N+ +  E
Sbjct: 482 SAAVFAIYKIFDFQIKEKKLSLLFFDTEMSLVEILSEMEISGIKVDLPFLRNFNEKIVYE 541

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQ 272
              ++  +  +  G+  +    ++L + +F +  L +   T+T          +L     
Sbjct: 542 LKIIENNIYKIA-GIEFNINSQKQLSSVMFEKLNLPVIKKTKTGYSTDEEVLVELSSHEF 600

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++   R    +     ++ L +             + G                    
Sbjct: 601 PAEILKYR-ELQKLKSTYIDPLTDYC----------VYYG-------------------- 629

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
           SR H   +Q +T      +++P+   I          R   +    K  + AD + I+ R
Sbjct: 630 SRIHTIFNQAVTTTGRLSSTEPNLQNIPVKSAYGKEFRKAFVPERNKIFISADYSQIDLR 689

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446
           VLA ++ +   ++AF+ G D++  T    FN+     +T   R+  K +   + Y     
Sbjct: 690 VLAHISQDTKFIEAFKAGTDIHSATAREIFNIPEGYPLTDSLRSAAKSINFGIIYGMSPF 749

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               ++    +        +       +                                
Sbjct: 750 ---GLSKQLNIPFGKAKEYIDGYFERYDK------------------------------- 775

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                       + W  + Q  +Q  E+G       R               I  +P  R
Sbjct: 776 -----------VKFW--MEQIVKQASEDGYVRTITGR---------------IRYIPELR 807

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGY 622
           S             N   R+               VQ  S DI+   M++        GY
Sbjct: 808 S------------TNAQVRKAGERMA-----LNTPVQGSSADIIKIAMISVYNEIKLKGY 850

Query: 623 D--IVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN 654
              ++L VHD+++ E PD +  N  S++ + M + 
Sbjct: 851 KSLMLLQVHDDLLFEVPDGESENMISIIKNKMENP 885


>gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of
           Bemisia tabaci]
          Length = 939

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 99/684 (14%), Positives = 195/684 (28%), Gaps = 177/684 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVA 70
           D+   G+  +  D  ++  AF +                      +L+   + TDV  V 
Sbjct: 368 DIATTGMDPHLAD--LLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTDVLKVG 425

Query: 71  HNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
           HN      V++    ++  P+   +    L        A         LS Q +      
Sbjct: 426 HNLKNALIVMQRHGLSIAPPLFDTMIAHGL-------VAADMDHHLTTLSEQYLNH---- 474

Query: 130 IARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLEPLSSK------- 181
              + K            PN  E        Y      +   I+ ++     +       
Sbjct: 475 -RSYLKP-----------PNRAEKESEGIKNYAGEGADLVLHIYPKIAQALREHKVATLF 522

Query: 182 ---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +   +   G  +D+    TL   ++     L +++ +L      +    ++
Sbjct: 523 YRVEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTLAQ-TTFNIDSPKQ 581

Query: 239 LKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           L   LF +  LH + +        T + +L+   K+ P    +   R             
Sbjct: 582 LGVVLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYR------------- 628

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
                                +         P    P   R H    Q +        + 
Sbjct: 629 ------------------TWQKLRSTYVDALPTLLHPIDQRLHATYHQTVVTTGRLSATG 670

Query: 354 PDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+  QI         +R   I   +G  L  AD + IE R++A  A +   + AF++ +D
Sbjct: 671 PNLQQIPIRTPTGRALRKAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQD 730

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T  + F      V ++ R   K+    + Y        +      L+    A L++
Sbjct: 731 IHQITAQKLFKTVI--VDQEMRQKAKIANFGIIYGISPFGLSE--RMEHLSRKEAAELIE 786

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                     + +    +    ++   A
Sbjct: 787 A-----------------------------------------YFEAFPGIKTYIDD-SIA 804

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +     + ++ RKR                  LP            +    N TTR +
Sbjct: 805 HAEANGYVRTLLGRKR-----------------FLP------------DLYASNPTTRGV 835

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + +++   M++        K    +++ VHDE+V   P ++ 
Sbjct: 836 ARRNA-----INTPIQGSAAEMIKLAMIHIQDWLEKHKLSTKLIIQVHDELVFNVPRSEI 890

Query: 642 FN-ASMLYHLMTSNPSWAKGLPLK 664
            +    +  LM +       LPL+
Sbjct: 891 ADIQHHIPLLMATA------LPLE 908


>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
 gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
 gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
          Length = 922

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/501 (15%), Positives = 163/501 (32%), Gaps = 123/501 (24%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  +  K     S+ +  + ++   +   G  VD    + L+     E  KL++E+ +L
Sbjct: 508 ILELKDNKAFRLYSNIDLPICFILDKMEKIGIKVDANYLNQLSAEFGAEILKLEEEIFAL 567

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           + G   +    ++L   LF +  L     +    +        +KL+     + +  +R 
Sbjct: 568 S-GTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW 626

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                         ++         P Q      R H    Q  
Sbjct: 627 ---------------------------RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTS 659

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   +       + +R   IA EG KL+ AD + IE R+L+ +A     
Sbjct: 660 TTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDAL 719

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF   +D++  T  + FN+   ++T + R   K +   + Y   A     +A    ++
Sbjct: 720 KQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVS 776

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               +  +K     + + + +    +M++                    KA+   +  V 
Sbjct: 777 NGEASEYIK-----KYFAEYKGVQEYMEQT-------------------KAFASSNGYVI 812

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             +                    ++  VPL++ KK K                     R+
Sbjct: 813 NFF-------------------GRKCFVPLIHDKKLKQF-----------------AERA 836

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
            +N                    +Q  + DI+   M+N             +VL +HDE+
Sbjct: 837 AINAP------------------IQGTNADIIKIAMINLDQEIEKNNLKTRLVLQIHDEL 878

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           + E P+ + E    ++  +M 
Sbjct: 879 LFEVPEDEVELVTPIIKKIME 899


>gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
 gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
          Length = 955

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 112/647 (17%), Positives = 203/647 (31%), Gaps = 157/647 (24%)

Query: 53  MPQVLKEALE----NTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARS 102
           + + L  A      +  +  +  +   +R +L+           D  +  ++C  + A +
Sbjct: 403 ISEDLASAFAEWVSDPQMRKIVMDLKNQRKLLREYGYKLDGAIEDPSLSSYMCGYIAAAN 462

Query: 103 NGL-PSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
             L    ++ + E  L +  Q   E  EL+         E   + N     +  R+  E 
Sbjct: 463 RRLFAERIEDLAEKYLWIPQQ---EFSELVFPEEAPSLFEMPGEENLRYFTQVSRVIHEL 519

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +  +    +   +L+     E  L Y+   +   G  V  AL + LN       +  ++
Sbjct: 520 ARI-LHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEE 578

Query: 221 ELESLTYGLVS----SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
           + + L  G V+    +   +++L+T LF   GL      ++       S   L  +    
Sbjct: 579 QAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPE 638

Query: 277 -----FNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                F   ++A R  +     +  L +A  +DGR+  T                     
Sbjct: 639 SDGAQFLIALQAYRDNIKLKQTVEGLQKAAVADGRVHTT--------------------- 677

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-------EGKKL 376
                       Q         ++ P+   I         +R   I +       E + L
Sbjct: 678 ----------FQQNAASTGRLSSTAPNLQNIPIRTDEGRRIRGAFIVAPKILDGVEYEGL 727

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++  +A ++  ++A+  GEDL+    +  F VAP +VT   RA  K M 
Sbjct: 728 LTADYSQIEMRIMVHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMS 787

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y  G   F  +A    ++ +                                    
Sbjct: 788 YGLAY--GLSRF-GLAKQLNISSDEA---------------------------------- 810

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                    ++  + ++  RV      L    +Q   +G       RR            
Sbjct: 811 -------GELRTNYFKRFGRVGRF---LRGVVKQAHNDGYTETIYGRR------------ 848

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                LP   S        NR+          RE      L   I Q  + DI+   M+N
Sbjct: 849 ---RSLPDLDS-------PNRT---------RREAAERAALNAPI-QGTAADIIKIAMIN 888

Query: 617 A------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656
                        ++L VHDEI+ E    + E    +L   M+    
Sbjct: 889 IHRRLQEENLKTRMLLQVHDEIILEVAAGEREAAQRILVEEMSEAIE 935


>gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/497 (13%), Positives = 148/497 (29%), Gaps = 118/497 (23%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L ++  ++   G+ ++  +   L      E T+ ++E+  L      +    ++L
Sbjct: 471 KVEHPLIFVLSSMEALGFNINKNMLDDLAIKFKEEITRTEKEIYDLA-EEEFNINSPKQL 529

Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+T       VL   +       ++   R     ++   +  L  
Sbjct: 530 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLQDKHEIIPKITYYRQITKLNSTY-VEGLKN 588

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++SDG +  +                                +Q +T      +++P+ 
Sbjct: 589 VIDSDGHIHSSF-------------------------------NQTVTTTGRLSSTEPNL 617

Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R   I  E G  L+  D + IE RVLA M+ ++  + AF+   D++ 
Sbjct: 618 QNIPIKYEMGREIRKVFIPDEEGDILLSCDYSQIELRVLAHMSNDENMIDAFKHHSDIHT 677

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V    VT   R+  K +   + Y     +  +      +     +  ++   
Sbjct: 678 KTASEVFKVPIEDVTSLMRSRAKAVNFGIVYGISDFSLSQ---DLHITKKEASEYMEI-- 732

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E +   + +   + +   E+                                      
Sbjct: 733 YFERYPKIKGYLDSVMQEAKENGYV----------------------------------- 757

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                   I  +RR +P +                           R  +N   +     
Sbjct: 758 ------LTILNRRRFIPEIKSSNR---------------IVKALGERLAMNAPIQ----- 791

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649
               G   + I  A+   +     +   +    ++L VHDE++    + +      +   
Sbjct: 792 ----GSAADIIKLAM---VNVYNKLKEKELKSTMILQVHDELILNVKENELEEVKQIVKD 844

Query: 650 LMTSNPSWAKGLPLKAE 666
            M         +PL+ +
Sbjct: 845 EMEKVLD--MKVPLEVD 859


>gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 880

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/400 (16%), Positives = 129/400 (32%), Gaps = 57/400 (14%)

Query: 171 IFKRLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           I K+L  L       + E  L Y    + + G  VD          +  +  KL++ + S
Sbjct: 467 ILKKLSELGLDDLYKNIEMPLIYSLAKMENTGVRVDEERLKKYANTLLEKIDKLEESIIS 526

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281
              G   +    ++L   LF +  L     T+T   T   VL            +   R 
Sbjct: 527 KA-GESFNINSPKQLGEILFGKLKLSGGKKTKTGYSTAADVLEKLALEHEIIRDILEYRQ 585

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
               ++      L   +  DGR+                               H   +Q
Sbjct: 586 LTKLNSTYA-TGLAGYIREDGRI-------------------------------HGTFNQ 613

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            IT      +++P+   I         +R   +   G   V AD + IE RVLA ++G++
Sbjct: 614 TITATGRISSTEPNLQNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRVLASLSGDE 673

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++++ +  D++  T ++ F+V   +VT + R   K +   + Y   A     ++    
Sbjct: 674 KLIESYHSAADIHAATASQVFHVPLEEVTPELRRNAKAVNFGVVYGISAF---GLSEDLS 730

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++       +        +       +   +     A E  F+ T   R++    +  S 
Sbjct: 731 ISRKEALDYINN------YFKIYGGVKKFLDKQVADAKEKGFVKTMFGRIRP-IPEIKSS 783

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                +   +    +   G A    K   + +    K+  
Sbjct: 784 NFMTRSFGDRVAMNSPIQGSAADIMKISMLKVDEALKESG 823



 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 599 ENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-M 651
            + +Q  + DI+   M+   +A    GYD  IVL +HDE++ E  + +    S L    M
Sbjct: 797 NSPIQGSAADIMKISMLKVDEALKESGYDANIVLQIHDELLIEVKEEEAEKVSKLVEKTM 856

Query: 652 TSNPSWAKGLPLKAEG 667
               S    +PL+ + 
Sbjct: 857 KEAVS--LKVPLEVDA 870


>gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
 gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
          Length = 875

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/606 (14%), Positives = 186/606 (30%), Gaps = 102/606 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +  D ET +  D         A+   ++ F+F F++         H  +  +        
Sbjct: 315 ISFDTET-TSTD---------AKIAKIVGFSFCFNEQTSYYVPLAHSYLGVESQISM--- 361

Query: 64  TDVTIVA-----------HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            +    A            N  ++  ++   F ++ P   +  T++LA  +   S++   
Sbjct: 362 -NSAKWAISQIYKGFVIGQNLKYDFRIVANNFGIE-PPKNYSDTMILAWLDDPSSSVGMD 419

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A KL + +  + + ++    KGE    +            +   +Y   D  +T + +
Sbjct: 420 NLAKKLYNYETIKFESVVK---KGEDFSSV----------DLQSASKYASEDAWITLKFY 466

Query: 173 KRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           K       +         E         +   G  +++     L    D     L  E+ 
Sbjct: 467 KTFTNKLEESMLNIAKNVEFPFILTLFDMESNGIRLNLEKLRALILRNDSALRALTTEIY 526

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280
            L      +    ++L + LF    L  +  T+T     + VLS    L P   ++   R
Sbjct: 527 ELC-EQRFNINSSKQLGSVLFDYLKLPAKKKTKTGYSTDESVLSELLDLHPSIEKILEYR 585

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
                 +                               +   +          R +    
Sbjct: 586 ELYKLQST------------------------------YCEPLLNLAIKDENHRVYTNFI 615

Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q  T      + +P+   I +       +R+     +G  L+  D + IE R+LA  + +
Sbjct: 616 QTGTATGRLSSKNPNLQNIPARGNLAKDMRAVFEPKDGYSLISLDYSQIELRLLAHFSCD 675

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AF+ G+D++  T    F     +     RAI K +   L Y  G+    K+++  
Sbjct: 676 PALIEAFKNGDDIHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSN---KLSNEL 728

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            ++  +    +        +  A +  +   ++    A  D F+ T   R  K +     
Sbjct: 729 SIDKKSAKEYID------RYFKAFSTIKDFLDSIKNRAKNDGFVETLIGR--KRYFDFGG 780

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +    T   G A    K   + +  +  D   ++L +        RD   
Sbjct: 781 ATPMQLAMFEREAVNTKFQGSAADIIKIAMIKVKDLLNDDAKMLLQIHDELIFEVRDEIA 840

Query: 576 NRSYLN 581
                N
Sbjct: 841 PSFAKN 846


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 102/528 (19%), Positives = 179/528 (33%), Gaps = 69/528 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVA 70
           ID    G+    E   + L       HPV + D        + P    +AL N+    V 
Sbjct: 39  IDTETTGLDPLTE--RIRLIQIAAPQHPVIIVDLAALADSELSP---LKALLNSSALKVF 93

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            N  F+  VL+      +        ++LA             + L+   +K  + + L 
Sbjct: 94  QNGKFDWQVLEMA---GLRPSGPFFDVMLA------------SQVLRSGLKKDHDLQSLT 138

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-------LSSKEQ 183
             F   +  + L   N      A     EY   D  V  ++  RL         L + + 
Sbjct: 139 FEFLGIKLDKSLQSSNFAGKLSA--SQLEYAALDAAVLLKLRARLHSKLRSAGLLETAKI 196

Query: 184 ELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E   +     +   G  +DV   H + + +  ++     EL     GL  +     +L  
Sbjct: 197 EFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQKQATLVELVK--AGLKPAPS--AQLS- 251

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF +    +E +   +  +VLS+ + L           +    ++  +L  +       
Sbjct: 252 -LFPDM---VETINPRSSVQVLSALQALN----------IPIKSTSKSELIPIARQYPV- 296

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
             ++  L +   +          P        R H    Q            P+   +  
Sbjct: 297 --IQLLLNYRKLASLCSNFAEALPKHIHQITGRIHPSYRQCGARSGRFSCKQPNLQNVPR 354

Query: 362 DC----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
           +C    +R+C IA  G +++ AD + IE R++A ++G+   L A+  GEDL+  T +   
Sbjct: 355 NCTVKGMRACFIAPPGYQIIKADYSQIELRIVAEISGDAKMLDAYVKGEDLHTLTASLIT 414

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG---LNLNTFAHLVKTNSAPEE 474
                +VT + R I K +   L Y  GA   Q  A       L L       K       
Sbjct: 415 GKLLEEVTTEDRRIAKSVNFGLIYGMGAAKLQAYAEEKYDVLLTLEEAKEFRK-----RF 469

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           ++      RW         ++D+         ++ W +K  R+SEL N
Sbjct: 470 FQAYSGVKRWHDSIRRTVYVKDIKQIRTIGGRRRRWAKK-PRLSELLN 516


>gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
 gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
          Length = 290

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/246 (38%), Positives = 127/246 (51%), Gaps = 19/246 (7%)

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSA----PEEWEDAENFCRWMQENH-PEHAIE 495
           Y+ G    +    +TGL L +   ++ T +A    P   ++A    +W + NH P   + 
Sbjct: 52  YRSGDDRRRYARRSTGLTLPSA--VIDTPNACAASPMPIQEAVEALQWTKANHRPTFGLS 109

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           D     AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 110 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 163

Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 164 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 223

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG++
Sbjct: 224 LAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 283

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 284 THRYRK 289


>gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 882

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 88/495 (17%), Positives = 146/495 (29%), Gaps = 110/495 (22%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  +      + D G  VD  L   L Q  D       +       G V +    +
Sbjct: 472 LLDLEMAVSRTLGEMEDAGIAVDEGLLEQLRQDFDGRVFAAARSAYDAIGGEV-NLSSPK 530

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L+  LF + GL      ++       +   L                          +A
Sbjct: 531 QLQEVLFDQLGLPPTRKMKSGHTTNADALANLAVSIAG----------------REDDKA 574

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +     L   L+   A +  R S          R  R H    Q         ++DP+  
Sbjct: 575 LAGQQFLASLLEHRDAIKL-RQSVVGLQRSV--RDGRIHTTFQQTAAATGRLSSTDPNLQ 631

Query: 358 QI-----ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R+  +  EG + ++ AD + IE R++A ++G+   ++AF  G DL+  
Sbjct: 632 NIHARTAEGRSIRAAFVPGEGYESIMTADYSQIEMRLMAALSGDVELIEAFREGADLHTY 691

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             +R + V   +VT D R+  K M   L Y   A     ++    +++     L      
Sbjct: 692 VASRVYGVPEEKVTADDRSHIKAMSYGLAYGLSAY---GLSKQLRISVAQAQAL------ 742

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                      SR   +   L    ++ 
Sbjct: 743 --------------------------------------MDDYFSRFGRVRTYLDSLVQEA 764

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            + G       RR                 LP                LN+T RQ  RE 
Sbjct: 765 RKEGYTQTILGRRRY---------------LP---------------DLNSTNRQ-AREA 793

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASML 647
                L   I Q  + D++   M+       +    ++L VHDE+V E    +      +
Sbjct: 794 AERMALNAPI-QGSAADVIKLAMVAVVDSMKEMRSRVLLQVHDELVLEIAPGERDAVEAV 852

Query: 648 YHL-MTSNPSWAKGL 661
               M +    A  L
Sbjct: 853 VRREMENAVELAVPL 867


>gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
 gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
          Length = 875

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/504 (15%), Positives = 147/504 (29%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             +  L  +   +   G  VD      L      E  +L   +  +  G   +    ++L
Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIA-GEEFNLDSPKQL 534

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF   GL      +        VL            V   R  A   +   ++ L  
Sbjct: 535 GHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTY-IDALPR 593

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               DG                               R H   ++ +T      +S+P+ 
Sbjct: 594 MRADDG-------------------------------RVHTCFNETVTTTGRLSSSEPNL 622

Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R C +   +G K + AD + IE R+LA ++ ++  + AF +G D + 
Sbjct: 623 QNIPVRTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHA 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +R F +    V+ + R+  K +   + Y   A    +   + G+             
Sbjct: 683 ATASRVFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQ---SLGI------------- 726

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               + +A+       E +P                             +   L +   +
Sbjct: 727 ---PFGEAKEMIERYFEAYP----------------------------GVRAYLDRTIAE 755

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTR 589
             E G A     R+                 +P  ++      G   R+ +N        
Sbjct: 756 AKEKGYAETMFGRK---------------RHIPELKAANATQRGFGERTAMNHPM----- 795

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                        Q  + DI+   M    +          ++L VHDE+    P+ + E 
Sbjct: 796 -------------QGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEE 842

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
            ++++  +M         +PL  +
Sbjct: 843 LSAIVKDVMEHIVD--LRVPLDVD 864


>gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 919

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 145/474 (30%), Gaps = 69/474 (14%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + +   V H++     +++      + +        L      P       +AL L  
Sbjct: 499 LGDPERPKVMHDAK---GLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALSLEY 555

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
                G+EL+                  +     R      +  + +   +  RL     
Sbjct: 556 L----GRELV-----PAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGA 606

Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              L+  E     L   +   G   D      + +       +  +E  +   G   +  
Sbjct: 607 EGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREAHA-AVGHEFNLG 665

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKL 291
             ++L+  LF E  L     T+T       S   L  Q      V   R R        +
Sbjct: 666 SPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTV 725

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++++  DGR+  T                                +Q +       +
Sbjct: 726 EGLIKSIAPDGRIHTT-------------------------------FNQTVAATGRLSS 754

Query: 352 SDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +DP+   I         +R   +  EG + L+ AD + IE RV+A ++ ++  + AF +G
Sbjct: 755 TDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSG 814

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+ T     FNV P  V  + R   K M   L Y   A    +     G+       L
Sbjct: 815 EDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEAGEARAL 871

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           + T      + +     R       E A    +  T   R ++     +S   +
Sbjct: 872 MDT------YFERFGGVRDYLHRVVEEARATGYTATMLGR-RRYLPDLNSDNRQ 918


>gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46]
          Length = 225

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 112/272 (41%), Gaps = 60/272 (22%)

Query: 416 SFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAP 472
            FNV    +TK    R  GKV ELALGYQGGA A + M +   G+  N            
Sbjct: 1   MFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ--------- 51

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                            +  +WR  +  +   W    +A   T+
Sbjct: 52  --------------------------------GLVDSWRNANPNIVNFWKACQEAAINTV 79

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR------SYLNTT- 583
           ++      RK      +     K  L++ LPSGR+L Y    VG N        ++    
Sbjct: 80  KS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDL 133

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
            R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ E P      
Sbjct: 134 NRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNG- 192

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              +  +M     WAKGL L ++G+ S  Y K
Sbjct: 193 LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224


>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 861

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 106/683 (15%), Positives = 214/683 (31%), Gaps = 165/683 (24%)

Query: 15  DLTKCGICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT 67
           DL + G   YA        D  +  FA    D    +            L +AL++T   
Sbjct: 304 DLLQDGALVYANVDNESYYDAQLYGFAISLQDRTEYI-----------ELSDALQDTAFL 352

Query: 68  IVA--HN--SYFERTVLKACFNLD-IPIHRWICTLVLARSN--GLPSALKAVGEALKLSS 120
                 N  + ++        + + IP       +++A     G  S    + E  +   
Sbjct: 353 EWLKEENGKAVYDAKNFYHALHKNNIPFADVTFDVMIAAFLVDGTLSDYDKLAEKYQFDR 412

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY--CKGDVTV-TREIFKRLEP 177
             +++       F K    + +       +  A   + +    K D  +   E+ +    
Sbjct: 413 SLLKD-----DVFGKKGKGKLVDSDEAARYAMAQADYLQDLVAKLDTALREMEMKELF-- 465

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            ++ E  L ++   +   G    ++    + +    +   L  ++  +  G+  +    +
Sbjct: 466 -TTIEMPLTHVLYAMEKEGVVTSLSTLDEIAKATSDKIDALSAKIYEIA-GMEFNINSPK 523

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   L+ E GL       +T   VL       P    +  +R +  +        L + 
Sbjct: 524 QLAGILYDELGLKAGKK-RSTAADVLEKLASQHPMIPLLLEHR-KYQKIYSTYAVGLSKH 581

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +  DG++                               H   +QI T      +S+P+  
Sbjct: 582 VLKDGKI-------------------------------HTIFNQIQTQTGRLSSSEPNLQ 610

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I         +R   +ASEG  L+ AD + IE R+LA MA E+  + AF  G D++  T
Sbjct: 611 NISVRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKT 670

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             + F+V    V  + R   K +   + Y         ++   G+        +      
Sbjct: 671 AMQIFDVEHDAVDANMRRSAKTVNFGIVYGQSDF---GLSEQLGITRKEAHAFID----- 722

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           + +    N   +M                       A+ ++H  V  L+N          
Sbjct: 723 KYFASYPNIKNFMDTTI-------------------AFCEEHGYVKTLFN---------- 753

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                    +RR +  +    DKN ++                 R+ +N           
Sbjct: 754 ---------RRRYIKEIS---DKNYMMREF------------GKRAAMNAP--------- 780

Query: 593 YGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + D++   M++        +    ++L +HDE++ +  + +      
Sbjct: 781 ---------IQGSAADLIKLAMIHIYKKMQEEQVKSRMILQIHDELIFDVWEEE---LEQ 828

Query: 647 LYHLMTSNPSWAKGL--PLKAEG 667
           +  ++      A  L  PL AE 
Sbjct: 829 MKTIVEEGMQHAMKLRVPLIAEA 851


>gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
 gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
          Length = 908

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 103/603 (17%), Positives = 172/603 (28%), Gaps = 127/603 (21%)

Query: 61  LENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           L +   T   H++  F        +NLD           L R +    +L+A+       
Sbjct: 391 LADPTATKAVHDAKRFGLACRSHGWNLDGVTSDTALAAYLVRPDLKSDSLEALATRYL-- 448

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV----TVTREIFKRL 175
                 G+EL  R    +      + +  N   A          D+              
Sbjct: 449 ------GRELNPRTAAAQPTLDGLETDGENEAAANLAALAAATRDLAEVLDGELASHNAA 502

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
             L+  E  +  +   +   G   DVA    L      E  +      +       + R 
Sbjct: 503 GLLADMELPVMTVLTEMEAIGITADVAHLTGLESTFAAEAAEAVAAAHAAVD-QTFNLRS 561

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL- 294
            ++L+  LF + G+     T+T       S   L           +   R       T+ 
Sbjct: 562 PKQLQEILFDKLGMPKTKRTKTGYTTDADSLAGLYATTQHPVLEAILRHRDREKLKQTVS 621

Query: 295 --VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             +  +  DGR+  T                                 Q +       + 
Sbjct: 622 GLLAEVAEDGRIHTT-------------------------------YQQNVAATGRLSSK 650

Query: 353 DPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           DP+   I         +R   I +EG + L+  D + IE R++A ++G++  ++AF++GE
Sbjct: 651 DPNLQNIPVRTDAGRRIRQGFIVTEGFETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGE 710

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           DL+ T  AR FNV P  V  +QR   K M   L Y   A    +     G+       L+
Sbjct: 711 DLHTTVAARVFNVEPGSVDAEQRRRIKAMSYGLAYGLSAYGLSQ---QLGITPEEARGLM 767

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +               R       E A +  +  T   R ++     +S   +  +   +
Sbjct: 768 EEYFTR------FGGVRDYLRTVVEEARKAGYTETMFGR-RRYLPDLNSDNRQRRDMAER 820

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
           A       G A                     I ML   R+LV   V +           
Sbjct: 821 AALNAPIQGSAA----------------DIMKIAMLNVHRALVAAKVKS----------- 853

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                                                ++L VHDE+V E    +      
Sbjct: 854 ------------------------------------RVLLQVHDELVLEIAPGEAPEVEK 877

Query: 647 LYH 649
           L  
Sbjct: 878 LVR 880


>gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567]
 gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567]
          Length = 955

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/533 (17%), Positives = 163/533 (30%), Gaps = 141/533 (26%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                     +    +   +L+     E  L Y+   +   G  V  AL + LN      
Sbjct: 513 SRVIHELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSR 572

Query: 215 RTKLDQELESLTYGLVS----SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
            +  +++ + L  G V+    +   +++L+T LF   GL      ++       S   L 
Sbjct: 573 ASMAEEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLL 632

Query: 271 PQAIQV-----FNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
            +         F   ++A R  +     +  L +A  +DGR+  T               
Sbjct: 633 TKVSPESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVTDGRVHTT--------------- 677

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS------ 371
                             Q         ++ P+   I         +R   I +      
Sbjct: 678 ----------------FQQNAASTGRLSSTAPNLQNIPIRTDEGRRIRGAFIVAPKVLDG 721

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            E + L+ AD + IE R++  +A ++  ++A+  GEDL+    +  F VAP +VT   RA
Sbjct: 722 VEYEGLLTADYSQIEMRIMVHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRA 781

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K M   L Y  G   F  +A    ++ +                              
Sbjct: 782 KVKAMSYGLAY--GLSRF-GLAKQLNISSDEA---------------------------- 810

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                          ++  + ++  RV      L    +Q   +G       RR      
Sbjct: 811 -------------GELRTNYFKRFGRVGRF---LRGVVKQAHNDGYTETIYGRR------ 848

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                      LP   S        NR+          RE      L   I Q  + DI+
Sbjct: 849 ---------RSLPDLDS-------PNRT---------RREAAERAALNAPI-QGTAADII 882

Query: 611 AEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656
              M+N        K    ++L VHDEI+ E    + E    +L   M+    
Sbjct: 883 KIAMINIHRRLQEEKLKTRMLLQVHDEIILEVAVGEREAAQRILVEEMSEAIE 935


>gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 314

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 119/359 (33%), Gaps = 92/359 (25%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
           ++  G S+         P     +  R H    Q +T      +SDP+   I        
Sbjct: 15  VEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGR 74

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   IA EG  +V AD + IE R++A ++G+Q  + AF  G+D++ +T A  F V+  
Sbjct: 75  RIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLD 134

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT +QR   K +   L Y   A     ++   G++       +                
Sbjct: 135 EVTSEQRRNAKAINFGLIYGMSAF---GLSRQLGISRPDAQKYMD--------------- 176

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                      + Q++  V +   ++ +A  +     + +  R+
Sbjct: 177 --------------------------LYFQRYPSVQQFMTDI-RAKAKAQGYVETLFGRR 209

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                            L LP   S    R  G  R  +N                    
Sbjct: 210 -----------------LYLPDINSSNAMRRKGAERVAINAPM----------------- 235

Query: 602 VQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN 654
            Q  + DI+   M+   +        ++++ VHDE+V E   +   F    +   M + 
Sbjct: 236 -QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAA 293


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 87/499 (17%), Positives = 164/499 (32%), Gaps = 70/499 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  +     + L     +D PV + DC       + L  A+ +T    V  N+
Sbjct: 32  VDTETTGLDPH--TCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAILSTSGVKVFQNA 89

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            F+   L A       +   +    L R +G P        A    ++ +++ ++     
Sbjct: 90  KFDLQFLMALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLNEDLDKEEQ----- 144

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------LSSKEQE 184
               T             E       Y   D  +   + K + P         ++  E  
Sbjct: 145 ----TSNW--------QGELTESQILYAARDAEILLRLRKVMIPQILENHLTQIAEIEFR 192

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL- 243
                  +  RG  +D      L +  + ER     EL +         R L ++  W  
Sbjct: 193 CVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYV------ERPLMQMSLWGE 246

Query: 244 -------FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
                  F      L  L E       ++ + L P                         
Sbjct: 247 DVAINQNFESQQFVLNVLHEHGIPVAATAKQDLYPHRRHPL------------------- 287

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                  ++  L +  A+++       F P   P   R H    QI          +P+ 
Sbjct: 288 -------VKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNI 340

Query: 357 LQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
            QI  D   R+C  A  G+KL++AD + IE RV A ++G+   + A++ GEDL++ T + 
Sbjct: 341 QQIPRDSEFRACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASL 400

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEE 474
             +    +++  +R   K +   L +  GA   Q+ A    G+ ++            + 
Sbjct: 401 VAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKA 460

Query: 475 WEDAENFCRWMQENHPEHA 493
           +     + + ++ + P+  
Sbjct: 461 YTGIHRWHQSIKAHLPKEG 479


>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
          Length = 875

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 94/635 (14%), Positives = 192/635 (30%), Gaps = 157/635 (24%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           LF++             ++     ++   L +  +  + ++      +LK   N    I 
Sbjct: 361 LFSYNTQ---------TNNNWFSDIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDIT 408

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                 ++  +     +                  K L     K    E +   +     
Sbjct: 409 AIEDLELMQYALSAGLS-----------------QKNLFKEVLKETLIENIIIESAKIVI 451

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
               L+ +       +  +  K     S  +  + ++   +   G  VD      L+   
Sbjct: 452 NFISLYKQ-----TILELKDNKTFRLYSDIDLPICFILDKMEKVGITVDANYLKQLSAEF 506

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKL 269
             E  KL++E+ +L+ G   +    ++L   LF +  L     +    +        +KL
Sbjct: 507 GTEILKLEEEIFALS-GTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKL 565

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           +     + +  +R                               ++         P Q  
Sbjct: 566 SEHGYNIADLLLRW---------------------------RQLTKLKNTYTDSLPKQID 598

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384
               R H    Q  T      + +P+   I       + +R   IA EG KL+ AD + I
Sbjct: 599 NITHRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSSEGNQIRQAFIAEEGYKLISADYSQI 658

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+L+ +A      +AF   +D++  T  + FN+   ++T + R   K +   + Y   
Sbjct: 659 ELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGIS 718

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A     +A          +  +K     + + + +    +M++                 
Sbjct: 719 AF---GLAKQLNATNGEASEYIK-----KYFAEYKGVQEYMEQT---------------- 754

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
              KA+   +  V+  +                    ++  VPL++ KK K         
Sbjct: 755 ---KAFASSNGYVTNFF-------------------GRKCFVPLIHDKKLKQF------- 785

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------ 618
                       R+ +N                    +Q  + DI+   M+N        
Sbjct: 786 ----------AERAAINAP------------------IQGTNADIIKIAMINLDQEIEKR 817

Query: 619 KAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
           K    +VL +HDE++ E P D  E    ++  +M 
Sbjct: 818 KLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIME 852


>gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
 gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
          Length = 512

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 97/601 (16%), Positives = 194/601 (32%), Gaps = 134/601 (22%)

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            L I +      ++LA               L  S Q+     + I    KG+    +  
Sbjct: 18  RLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYG-KGKKQHSVDV 76

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                H        +  K  +    +  ++L    + E  +  +   +   G  V     
Sbjct: 77  DTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTL 136

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--- 261
             +   +DV  T L  ++  L  G   +    ++L   LF +  L     T+T       
Sbjct: 137 VKMKNDLDVRITDLKNKIYQLA-GEKFNINSPKQLGVILFEKLKLTPAKKTKTGYSTSVD 195

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL   +  +P    + + R   S+     +N L++ + +DG++                 
Sbjct: 196 VLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKI----------------- 237

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKK 375
                         H    Q +T      + +P+   I         +R   +  +    
Sbjct: 238 --------------HTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSY 283

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434
           L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT   R   K 
Sbjct: 284 LFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKA 343

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y         +A   G++                 ++A+NF     E +P    
Sbjct: 344 VNFGIVYGISDY---GLAKNLGISR----------------QEAQNFINNYFEQYP---- 380

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKK 553
                                   ++ + +  A +   E G A  I  +RR +P ++ K 
Sbjct: 381 ------------------------QIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKN 416

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                     + RS         R+ +N+                   +Q  + DI+   
Sbjct: 417 F---------NIRSFA------ERTAINSP------------------IQGSAADIIKIA 443

Query: 614 MMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           M+         K    ++L +HDE++ + P  + +   +++  +M         +PL A+
Sbjct: 444 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIAD 501

Query: 667 G 667
            
Sbjct: 502 A 502


>gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
 gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
          Length = 885

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 105/638 (16%), Positives = 197/638 (30%), Gaps = 154/638 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALK 110
           + L+E LEN + T+   +       LK    L I        L+L           + L 
Sbjct: 365 EPLREFLENKNKTLDVFDGKKTYVSLKR---LGIEAESIDFDLLLVSYLLNNTDNSNDLG 421

Query: 111 AVGEALKLSSQKMEE---GKELIARFCKGETH-ECLYDR--NKPNHREAWRLFGEYCKGD 164
            + +       K ++   GK      C  ET  E L  +       ++      +    D
Sbjct: 422 QLCQKQGYFGVKSDDEVYGKGAKKEICADETFFEHLRSKVFAIAFLKQKLMQKLKDNSQD 481

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                            E+ L  +   +   G   D     T+      + + L+  +  
Sbjct: 482 -----------HLYFEIERPLSIVLAKMEIAGIKADKETLETMGSRFKEKISDLESLIYQ 530

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMR 282
              G   +    ++L T LF + GL     T+T     +   +KL        V   R  
Sbjct: 531 EA-GETFNINSPKQLGTILFDKLGLPGAKKTKTGYSTAVGVLEKLRGNDIVDNVLLYRQF 589

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +   ++ L++ M+ D ++                               H    Q 
Sbjct: 590 AKLKSTY-IDGLIKVMDQDEKV-------------------------------HTRYTQT 617

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQ 396
           +T      + +P+   I         +R   I S  G ++  +D + IE RVLA ++ ++
Sbjct: 618 LTTTGRLSSVEPNLQNIPVRLEEGRKIRQAFIPSHQGWEIFSSDYSQIELRVLAHISKDE 677

Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              KAF+   D++  T  + F ++ P +VT + R   K +   + Y         +A + 
Sbjct: 678 NMQKAFKDDFDIHANTAMKIFGLSSPDEVTPNMRRQAKAVNFGIVYGISDF---GLAQSI 734

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G   +     ++T      + ++    +       E A    ++ T              
Sbjct: 735 GCRRDQAKTFMET------YFESFPGVKRYMTEIVELARNQGYVET-------------- 774

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                  + ++RR +  +  K             RS        
Sbjct: 775 -----------------------LFKRRRYLEGIRSKNFNQ---------RSFA------ 796

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVH 629
            R+ +NT                   +Q  + DI+   M      +   +    ++L VH
Sbjct: 797 ERTAMNTP------------------IQGSAADIIKVAMIKMQETLEKEELKARMLLQVH 838

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           DE++ E P+ +      L   +M S       +PLK E
Sbjct: 839 DELIFEAPEEEIPVLEKLVPSVMDSAVK--LDVPLKVE 874


>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
 gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
          Length = 872

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 157/480 (32%), Gaps = 123/480 (25%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           ++   +   G  VD    + L+     E + L++E+ +L+ G   +    ++L   LF +
Sbjct: 479 FILDKMEKTGIKVDANYLNQLSAEFGAEISILEEEIFALS-GTKFNIGSPKQLGKILFEK 537

Query: 247 TGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
             L          +        +KL+     + +  +R                      
Sbjct: 538 MQLPFGKAAAKAISYSTAAEILEKLSEHGYNIADLLLRW--------------------- 576

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
                    ++         P Q      R H    Q  T      + +P+   I     
Sbjct: 577 ------RQLTKFKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSR 630

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
             + +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+
Sbjct: 631 EGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTACQIFNL 690

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              ++T + R   K +   + Y   A     +A    ++ +  +  +K     + + + +
Sbjct: 691 QKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVSNSEASEYIK-----KYFAEYK 742

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
               +M++                    KA+   +  V   +                  
Sbjct: 743 GVQEYMEQT-------------------KAFASSNGYVINFF------------------ 765

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             ++  +PL++ KK K                     R+ +N                  
Sbjct: 766 -GRKCFIPLIHDKKLKQF-----------------AERAAINAP---------------- 791

Query: 600 NIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
             +Q  + DI+   M+N        K    +VL +HDE++ E P+ + E    ++  +M 
Sbjct: 792 --IQGTNADIIKIAMINLDQEIAKNKLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIME 849


>gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 889

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 108/611 (17%), Positives = 178/611 (29%), Gaps = 146/611 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + D   V H++     VL         +        LA     P       +AL L  
Sbjct: 375 LADADRPKVFHDAKGAMRVLAEH---GWSVDGVRMDTALAAYLVKPGRRSFALDALSL-- 429

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RLEPLS 179
                 + L          +           EA  L  +     +    E+F+ RLE + 
Sbjct: 430 ------EYLHRELAPAAAADGQLAFGADEAAEAEMLMIQ--ARSILDLGEVFEGRLEEVG 481

Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E     L   +   G   D A    + Q+      +  +E  +   G   + 
Sbjct: 482 AADLLRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHA-AAGHEFNL 540

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLK 290
              ++L+  LF E  L     T+T       +   L  Q    + V   R R      + 
Sbjct: 541 GSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVT 600

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++ + +DGR+  T                                +Q +       
Sbjct: 601 VEGLIKTIAADGRIHTT-------------------------------FNQTVAATGRLS 629

Query: 351 TSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           ++DP+   I         +R   +  EG + L+ AD + IE RV+A ++ +   ++AF +
Sbjct: 630 STDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTS 689

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GEDL+ T  ++ F V  + V  + R   K M   L Y   A    +      +       
Sbjct: 690 GEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAAEARA 746

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           L                                                  R   + + L
Sbjct: 747 L--------------------------------------------MDAYFERFGGVRDYL 762

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A ++    G       RR                 LP                LN+  
Sbjct: 763 RRAVDEARATGYTATLFGRRRY---------------LP---------------DLNSDN 792

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPD 638
           RQ  RE      L   I Q  + DI+   M+N  +A         ++L VHDEIV E   
Sbjct: 793 RQ-RREAAERMALNAPI-QGTAADIVKIAMLNVDRALREADLKSRMLLQVHDEIVLEIAP 850

Query: 639 TDEFNASMLYH 649
            +      +  
Sbjct: 851 GERAATEEIVR 861


>gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum]
          Length = 872

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 98/635 (15%), Positives = 189/635 (29%), Gaps = 164/635 (25%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRW 93
           +  D      +    +  + +    A  +    +   + +   R      F L IP   +
Sbjct: 360 WVHDGDQANFYPFSSEEEVLKR-MSAWRDEGKAVWCFDQTRLYRKC-PRFFALGIP---F 414

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           +    +A     P     + E L                F    +      RN     + 
Sbjct: 415 VFDATIAAYLLEPGHRDYLLENLA------------ARYFLTDTSDRPRLVRNV--LSKL 460

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           W         D          LE + S E  L  +   +   G  +D     +  + ++ 
Sbjct: 461 WE--------DAVKE----GLLELVQSIEIPLGRILYQMEVLGIRIDRQALESARESIEA 508

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLT 270
              +L++E+  L  G   +    +++   L+ + GL      +T     +  L+    L 
Sbjct: 509 LARELEEEIYRLA-GSRFTILSPKQVGEILYGKLGLPTARKGKTGYSTDEETLTGLSGLH 567

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P   ++   R    +     ++ +   +++ GRL G                        
Sbjct: 568 PLPEKILAYRQ-MKKLLSTYVDPISRGVDAQGRLHGQF---------------------- 604

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
                    +Q +T      +S+P+   I         +R C IA E + L+ AD + IE
Sbjct: 605 ---------NQTVTATGRLSSSNPNLQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIE 655

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA  + +   +  FE  ED++  T    F      VT + R   K +   + Y   A
Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFGDP---VTPETRRKAKTINFGILYGMSA 712

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            +        G+        +                                       
Sbjct: 713 FSLSL---DLGVEPPEAQAFIDRYFG---------------------------------- 735

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                     +V  L++ + +  ++T    + I+ RKRR                     
Sbjct: 736 -------AFPKVGPLFDSILEEAKKT-GEVRTILGRKRR--------------------I 767

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV-QAVSRDILAEGMMNATKAG--- 621
             L   D                R   YG ++  N V Q  + D++ + M++  +     
Sbjct: 768 PELSAPD---------------RRSREYGERMAVNTVLQGSAADLIKKSMVDFGQVRKDR 812

Query: 622 ---YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
               D+++ VHDE++ E   D  E  +  +  LM 
Sbjct: 813 PEVGDLLVQVHDELLFEVREDNLEDASGTIRSLME 847


>gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 321

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 94/268 (35%), Gaps = 16/268 (5%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
           +Q+   S+         P Q  PR  R H    Q +       +SDP+   I        
Sbjct: 21  MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGR 80

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  T A  F V   
Sbjct: 81  RIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELE 140

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT D R   K +   L Y   A     +A   G++       V    A           
Sbjct: 141 NVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFARYP------GV 191

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               E     A E  F+ T   R +      +++   L     +        G A    K
Sbjct: 192 LDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIK 250

Query: 543 RRDVPLVYMKKDKN-NLILMLPSGRSLV 569
           +  V +    ++   +  ++L     LV
Sbjct: 251 KAMVAVNGWLEESGLDARVILQVHDELV 278


>gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
 gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
          Length = 882

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 145/457 (31%), Gaps = 58/457 (12%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT---------I 192
              R  P   + +  F    +    +     + L+ L++ EQ+  Y D           +
Sbjct: 436 GVKRAIPEDDDVF--FSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQM 493

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD +    +        ++++Q +     G   +    ++L   LF E  L + 
Sbjct: 494 EIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEA-GEEFNINSPKQLGHILFEEMKLPVI 552

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
             T+T     +   +KL P+A  V N                             LQ+  
Sbjct: 553 KKTKTGYSTAVDVLEKLAPEAPIVAN----------------------------ILQYRQ 584

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
            S+                  + H    Q +T      + DP+   I         +R  
Sbjct: 585 ISKIQSTYVVGLLDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQA 644

Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVT 425
            + S EG ++  +D + IE RVLA +  ++    AF+ G+D++  T  R F++ +  +VT
Sbjct: 645 FVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVT 704

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K +   + Y        +     G+        +        +       +  
Sbjct: 705 PNIRRQAKAVNFGIVYGISDYGLSQ---NIGITRKQARSFIDA------YFKEYPGVKKY 755

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +   + A +  ++ T   R ++     +S+     +   +    T   G A    K   
Sbjct: 756 MDEIVQTAKKQGYVETISHR-RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKIAM 814

Query: 546 VPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLN 581
           + +    +       ++L     L++         L 
Sbjct: 815 IKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLE 851


>gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309]
 gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309]
          Length = 908

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 91/512 (17%), Positives = 163/512 (31%), Gaps = 137/512 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  L   + D G   D ++ + L+  +        +E      G   +    +
Sbjct: 499 LTDMEMPLSVLLGQMEDIGIAADTSVLNGLSDELGKAVDA-AREGAWAAAGREVNLSSPK 557

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ------AIQVFNNRMRASRSAVLKL 291
           +L+  LF   GL     T+T       +   L  +      A   F   +   R   +KL
Sbjct: 558 QLQELLFDHFGLPKTKKTKTGYTTNADALADLHAKTSDEGGAGHDFLGFLLTHRD-RIKL 616

Query: 292 NTLVEA----MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             +V++    + SDGR+  T                                 Q+     
Sbjct: 617 KQMVDSLSATVASDGRIHTT-------------------------------FSQVAAATG 645

Query: 348 TSITSDPDPLQIISD-----CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +SDP+   I +       +R   +A EG + L+ AD + IE R++A ++G++  ++A
Sbjct: 646 RLASSDPNLQNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEA 705

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +GEDL+ T  +  F    A+V+ ++R+  K     L Y   +     +A+  G+ +  
Sbjct: 706 FNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSY---GLAAQLGIPVPE 762

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A L                                              +   R  ++ 
Sbjct: 763 AAALRD--------------------------------------------RYFERFGKVR 778

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           + L     Q   +G       RR                 LP  RS              
Sbjct: 779 DYLEGLVAQARADGYTQTMFGRRRY---------------LPDLRS-------------- 809

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCE 635
             + +  RE      L   I Q  + DI+   M+N   A         +++ +HDE++ E
Sbjct: 810 --SNRQRREMAERAALNAPI-QGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVE 866

Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
               +      +    M +       +PL   
Sbjct: 867 VAPGEAAAVEAIVRDRMATPVE--LSVPLDVA 896


>gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 887

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 145/457 (31%), Gaps = 58/457 (12%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT---------I 192
              R  P   + +  F    +    +     + L+ L++ EQ+  Y D           +
Sbjct: 441 GVKRAIPEDDDVF--FSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQM 498

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD +    +        ++++Q +     G   +    ++L   LF E  L + 
Sbjct: 499 EIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEA-GEEFNINSPKQLGHILFEEMKLPVI 557

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
             T+T     +   +KL P+A  V N                             LQ+  
Sbjct: 558 KKTKTGYSTAVDVLEKLAPEAPIVAN----------------------------ILQYRQ 589

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
            S+                  + H    Q +T      + DP+   I         +R  
Sbjct: 590 ISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQA 649

Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVT 425
            + S EG ++  +D + IE RVLA +  ++    AF+ G+D++  T  R F++ +  +VT
Sbjct: 650 FVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVT 709

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K +   + Y        +     G+        +        +       +  
Sbjct: 710 PNIRRQAKAVNFGIVYGISDYGLSQ---NIGITRKQARSFIDA------YFKEYPGVKKY 760

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +   + A +  ++ T   R ++     +S+     +   +    T   G A    K   
Sbjct: 761 MDEIVQTAKKQGYVETISHR-RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKIAM 819

Query: 546 VPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLN 581
           + +    +       ++L     L++         L 
Sbjct: 820 IKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLE 856


>gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG']
          Length = 872

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 134/390 (34%), Gaps = 54/390 (13%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            LE + S E  L  +   +   G  +D     +  + ++    +L++E+  L  G   + 
Sbjct: 469 LLELVQSIEIPLGRILYQMEVLGVRIDRQALESARESIEALSRELEEEIYRLA-GSRFTI 527

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              +++   L+ + GL      +T     +  L+    L P   ++   R    +     
Sbjct: 528 LSPKQVGEILYGKLGLPTARKGKTGYSTDEETLTRLSALHPLPEKILAYRQ-MKKLLSTY 586

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ +   +++ GRL G                                 +Q +T      
Sbjct: 587 VDPIARGIDAQGRLHGQF-------------------------------NQTVTATGRLS 615

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +S+P+   I         +R C IA E + L+ AD + IE R+LA  + +   +  FE  
Sbjct: 616 SSNPNLQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERN 675

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T    F      VT + R   K +   + Y   A +  +     G+        
Sbjct: 676 EDIHARTARLLFGDP---VTPETRRKAKTINFGILYGMSAFSLSQ---DLGVESQEAQAF 729

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +        +  A      + ++  E A +   + T   R K+   +  +          
Sbjct: 730 ID------RYFGAFPKVGPLFDSILEEAKKTGEVRTILGR-KRRIPELFASDRRSREYGE 782

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           +    T+  G A    K+  V    ++KD+
Sbjct: 783 RMAVNTVLQGSAADLIKKSMVDFGQVRKDR 812


>gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B']
          Length = 865

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 108/628 (17%), Positives = 199/628 (31%), Gaps = 142/628 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS------ALK 110
           +K   E  +++ + HNS   R +L       I IH  I    +A     P       ++ 
Sbjct: 351 VKNFFEAKNISKILHNSKDLRHILYRY---QINIHGNIFDTAIASYLINPLQSDYELSVA 407

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           A G  +K   Q +  GK  I           +  +        W L     K     +  
Sbjct: 408 ATGYDIKHVDQLLGTGKNKITWAS--LASXIIVAQLGARASAMWTLQTAQLKELTDASM- 464

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
               L+     E  L  +   +   G  VD A      + +D     L+Q++ SL     
Sbjct: 465 ----LDLFYDIEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSLAD-EK 519

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM--RASR 285
            +    ++L   LF + G+     T+T       +L   K       +V   R   +   
Sbjct: 520 FNISSSKQLGLILFDKLGIPAGKKTKTGYSTAANILDKLKDKYVIVAKVLEYRQYKKLHS 579

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           + V+ L  L++                                  + ++ H   +Q +T 
Sbjct: 580 TYVVGLLKLLD----------------------------------KNNKLHSTFNQTVTA 605

Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                +++P+   I     +   +R   I S +    + AD + IE RVLA ++ +    
Sbjct: 606 TGRISSAEPNLQNIPIRLALGKEIRRAFIPSNDDYVFLDADYSQIELRVLASLSADANMQ 665

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++ +T +  F V    VT+ QR   K +   + Y   A +    A    ++ 
Sbjct: 666 RAFLEGIDIHTSTASEVFGV--DTVTQAQRNAAKAVNFGVVYGISAFSL---ADDIQVSN 720

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 ++   A   + + +++   +                                  
Sbjct: 721 QEATEYIENYFAK--YPNVKHYLDSLITT------------------------------- 747

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                     Q    G  ++ RKR  V L     +                      R  
Sbjct: 748 ---------SQATGYGVTLLNRKRNIVELFSSNFNT----------------KEYGKRIA 782

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
           +N   +         G   + I +A+   I     +  T++   ++LTVHDE++ E   +
Sbjct: 783 MNMPIQ---------GTAADIIKKAM---IQVHNALKGTRST--LILTVHDELLLEVHKS 828

Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + E    +L   M S    A  +PL  +
Sbjct: 829 EIEHITKLLKTEMESAVKLA--VPLLVD 854


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
          Length = 861

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 83/555 (14%), Positives = 166/555 (29%), Gaps = 136/555 (24%)

Query: 134 CKGETHECLYDRNKPNH--REAWRLFGEYCKG-DVTVTREIFKRLE------PLSSKEQE 184
           C     +    + KP     E    +   C      + +++F  LE         + E  
Sbjct: 412 CTLSKEDVFGKKGKPKLVVEEDAAAYAMQCAENLANIEQQLFDELEQKDMKELYDTIEMP 471

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           +  +   +   G    V     + +    +   L+ ++     G+  +    ++L   L+
Sbjct: 472 VVEVLYAMEKEGVHTSVETLQEIAEATGKKIEALNAQIYEYA-GMEFNINSPKQLAVVLY 530

Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            E GL       +T   VL   K + P    +   R +  +        L + +  DG++
Sbjct: 531 DELGLPCGKK-RSTGADVLEKLKPVHPIISLLLEQR-KYQKIYSTYAVGLSKHILKDGKI 588

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
                                          H   +QI T      +S+P+   I     
Sbjct: 589 -------------------------------HTIFNQIQTQTGRLSSSEPNLQNISVRDE 617

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R   +AS    L+ AD + IE R+LA MA E+  ++AF  G D++  T  + F+V
Sbjct: 618 EGKVIRKAFVASPQHTLMSADYSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDV 677

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
               V  + R   K +   + Y         ++   G+ +      +             
Sbjct: 678 DHDHVDSNMRRSAKTVNFGIVYGQSDF---GLSEQLGITMKEAKRFID------------ 722

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                         +   +  +    ++   AF +     K + 
Sbjct: 723 -----------------------------KYFASYPNIKTFMDDTI-AFCEENGYVKTMF 752

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
            R+R                          Y    N+++Y+     +  R          
Sbjct: 753 GRRR--------------------------YIKEINDKNYMMREFGK--RAAMNAP---- 780

Query: 600 NIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MT 652
             +Q  + D++   M++        K    ++L +HDE++ +  D +      +    M 
Sbjct: 781 --IQGSAADLIKLAMVHIYQTMKEKKVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQ 838

Query: 653 SNPSWAKGLPLKAEG 667
                   +PL AE 
Sbjct: 839 QAMQ--LRVPLIAEA 851


>gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 882

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 145/457 (31%), Gaps = 58/457 (12%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT---------I 192
              R  P   + +  F    +    +     + L+ L++ EQ+  Y D           +
Sbjct: 436 GVKRAIPEDDDVF--FSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQM 493

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD +    +        ++++Q +     G   +    ++L   LF E  L + 
Sbjct: 494 EIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEA-GEEFNINSPKQLGHILFEEMKLPVI 552

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
             T+T     +   +KL P+A  V N                             LQ+  
Sbjct: 553 KKTKTGYSTAVDVLEKLAPEAPIVAN----------------------------ILQYRQ 584

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
            S+                  + H    Q +T      + DP+   I         +R  
Sbjct: 585 ISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQA 644

Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVT 425
            + S EG ++  +D + IE RVLA +  ++    AF+ G+D++  T  R F++ +  +VT
Sbjct: 645 FVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVT 704

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K +   + Y        +     G+        +        +       +  
Sbjct: 705 PNIRRQAKAVNFGIVYGISDYGLSQ---NIGITRKQARSFIDA------YFKEYPGVKKY 755

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +   + A +  ++ T   R ++     +S+     +   +    T   G A    K   
Sbjct: 756 MDEIVQTAKKQGYVETISHR-RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKIAM 814

Query: 546 VPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLN 581
           + +    +       ++L     L++         L 
Sbjct: 815 IKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLE 851


>gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243]
 gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243]
          Length = 875

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/504 (15%), Positives = 146/504 (28%), Gaps = 132/504 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             +  L  +   +   G  VD      L      E  +L   +  +  G   +    ++L
Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIA-GEEFNLDSPKQL 534

Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF   GL      +        VL            V   R  A   +   ++ L  
Sbjct: 535 AHILFEVLGLRTLRKNQRGYSTDAAVLKELSNDHELPALVLRYRELAKIKSTY-IDALPR 593

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               DG                               R H   ++ +T      +S+P+ 
Sbjct: 594 MRADDG-------------------------------RVHTSFNETVTTTGRLSSSEPNL 622

Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +R C +   EG   + AD + IE R+LA ++ ++  + AF +G D + 
Sbjct: 623 QNIPVRTEFGRQIRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHA 682

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +R F +    V+ + R+  K +   + Y   A    +   + G+             
Sbjct: 683 ATASRVFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQ---SLGI------------- 726

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               + +A+       E +P                             +   L +   +
Sbjct: 727 ---PFGEAKEMIERYFEAYP----------------------------GVRAYLDRTIAE 755

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTR 589
             E G A     R+                 +P  ++      G   R+ +N        
Sbjct: 756 AKEKGYAETMFGRK---------------RHIPELKAANATQRGFGERTAMNHPM----- 795

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642
                        Q  + DI+   M    +          ++L VHDE+    P+ + E 
Sbjct: 796 -------------QGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEE 842

Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666
            ++++  +M         +PL  +
Sbjct: 843 LSAIVKDVMEHIVD--LRVPLDVD 864


>gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
 gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
          Length = 837

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/497 (17%), Positives = 159/497 (31%), Gaps = 75/497 (15%)

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           LD     W+          L      +G+A+           +L A             +
Sbjct: 345 LDSDADLWVFDAKPLYHLALDR--GGIGKAIHFDG-------KLAAYLLNPS-ASGYAVK 394

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREI------------FKRLEPLSSKEQELWYLDQTIN 193
           N     +    F      D  V   +             ++L      E  L  +   + 
Sbjct: 395 NLAGEYDVPAAFTCEAAPDAGVLAALLDKLAAALDESGQRKLH--DEMELPLARVLADME 452

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G+ VD          +  E   + Q +     G   +    ++L   LF + GL    
Sbjct: 453 RIGFAVDADGIRAFGDSLRGELDGILQSIYE-EVGYEFNVNSPKQLGEALFDKLGLPPRK 511

Query: 254 LTETTCQRV---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T          L S +  +P   Q+   R  A   +   +  L+ A  +DGR+  T   
Sbjct: 512 KTSRGYSTDAATLESLRPYSPVIDQILKYRTYAKLLSTY-VEGLLSAQAADGRVHSTFI- 569

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVR 365
                                         Q         +++P+   I     +   +R
Sbjct: 570 ------------------------------QTEARTGRISSTEPNLQNIPIRTELGSRLR 599

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              +A  GK+LV AD + IE R+LA + G++   +AF  G D++ +T A+ +++  ++VT
Sbjct: 600 GFFVAGAGKELVDADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVT 659

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R+  K +   + Y  GA +         +++      +KT  A              
Sbjct: 660 PQLRSASKAINFGIMYGKGAFSLS---KDLDVSVKEADAFLKTYLATFPK------VDGY 710

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            ++   HA E  ++ T   R ++A  +  S   ++     +    T   G A    K   
Sbjct: 711 MQDCIAHAKEKGYVETLFGR-RRALPELASSNFQVRASGERMARNTPIQGTAADIIKLAM 769

Query: 546 VPLVYMKKDKNNLILML 562
           V +    +D+     +L
Sbjct: 770 VHVWQRLRDEKLEARLL 786


>gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 936

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 153/497 (30%), Gaps = 133/497 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           LS  E     +   +   G  VD A    L+  +  +  +  +   ++  G   +    +
Sbjct: 527 LSDVEMPTAAVLAGMERVGIGVDSARLGALSDELGGDVERAREGALAV-LGREVNLSSPK 585

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------IQVFNNRMRASRSAVLK- 290
           +L+  LF   GL     T+T       + + L  +          F   + A R  +   
Sbjct: 586 QLQEVLFEHFGLPRTRRTKTGYTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLK 645

Query: 291 --LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +++L+ ++  DGR+  T                                 Q+      
Sbjct: 646 QMVDSLIASVADDGRIHTT-------------------------------FSQVAAATGR 674

Query: 349 SITSDPDPLQIISD-----CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             ++DP+   I +       +R   +A  G + L+ AD + IE R++A ++ ++  + AF
Sbjct: 675 LASADPNLQNIPARSADGMRIRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAF 734

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +GEDL+ T  +  F    A+VT  QR+  K     L Y         ++   G+ +   
Sbjct: 735 NSGEDLHRTMASMVFGTPVAEVTAQQRSRIKATSYGLAYGLSKY---GLSKQLGIPVPEA 791

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A L +                                            +   R   + +
Sbjct: 792 AALRE--------------------------------------------RYFERFGGVRD 807

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            L    +Q    G       RR                 LP                L +
Sbjct: 808 YLESLVDQARSRGYTETMYHRRRY---------------LP---------------DLGS 837

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEIVCET 636
             RQ  RE      L   I Q  + DI+   M+       +AG    +++ +HDE++ E 
Sbjct: 838 DNRQ-RREMAERAALNAPI-QGSAADIMKLAMIGVVGALGRAGLRSRVLVQIHDELLVEV 895

Query: 637 PDTDEFNASMLYHL-MT 652
              +           M 
Sbjct: 896 APGERERVEEAVRQEMA 912


>gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
          Length = 889

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 91/512 (17%), Positives = 162/512 (31%), Gaps = 137/512 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  L   + D G   D ++   L+  +        +E      G   +    +
Sbjct: 480 LTDMEMPLSVLLGQMEDIGIAADTSVLDGLSDELGKAVDA-AREGAWAAAGREVNLSSPK 538

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ------AIQVFNNRMRASRSAVLKL 291
           +L+  LF   GL     T+T       +   L  +      A   F   +   R   +KL
Sbjct: 539 QLQELLFDHFGLPKTKKTKTGYTTNAEALADLHAKTSDEGGAGHDFLGFLLTHRD-RIKL 597

Query: 292 NTLVEA----MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             +V++    + SDGR+  T                                 Q+     
Sbjct: 598 KQMVDSLSATVASDGRIHTT-------------------------------FSQVAAATG 626

Query: 348 TSITSDPDPLQIISD-----CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +SDP+   I +       +R   +A EG + L+ AD + IE R++A ++G++  ++A
Sbjct: 627 RLASSDPNLQNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEA 686

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +GEDL+ T  +  F    A+V+ ++R+  K     L Y   +     +A+  G+ +  
Sbjct: 687 FNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSY---GLAAQLGIPVPE 743

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A L                                              +   R  ++ 
Sbjct: 744 AAALRD--------------------------------------------RYFERFGKVR 759

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           + L     Q   +G       RR                 LP  RS              
Sbjct: 760 DYLEGLVAQARADGYTQTMFGRRRY---------------LPDLRS-------------- 790

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCE 635
             + +  RE      L   I Q  + DI+   M+N   A         +++ +HDE++ E
Sbjct: 791 --SNRQRREMAERAALNAPI-QGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVE 847

Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
               +      +    M +       +PL   
Sbjct: 848 VAPGEAAAVEAIVRDKMATPVE--LSVPLDVA 877


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/499 (17%), Positives = 165/499 (33%), Gaps = 70/499 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  +     + L     +D PV + DC       + L  A+ +T    +  N+
Sbjct: 27  VDTETTGLDPH--TCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAILSTSGIKIFQNA 84

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            F+   L A       +   +    L R +G P        A    ++ +++ ++     
Sbjct: 85  KFDLQFLMALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLNEDLDKEEQ----- 139

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------LSSKEQE 184
               T             E       Y   D  +   + K + P         ++  E  
Sbjct: 140 ----TSNW--------QGELTESQILYAARDAEILLRLRKVMIPQILENHLTQIAGIEFR 187

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL- 243
                  +  RG  +D      L +  + ER     EL +         R L ++  W  
Sbjct: 188 CVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYV------ERPLMQMSLWGE 241

Query: 244 -------FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
                  F      L  L E       ++ + L P                         
Sbjct: 242 DVAINQNFESQQFVLNVLHEHGIPVAATAKQDLYPYRRHPL------------------- 282

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                  ++  L +  A+++       F P   P   R H    QI          +P+ 
Sbjct: 283 -------VKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNI 335

Query: 357 LQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
            QI  D   R+C  A  G+KL++AD + IE RV A ++G+   + A++ GEDL++ T + 
Sbjct: 336 QQIPRDSEFRACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASL 395

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEE 474
             +   A++T  +R   K +   L +  GA   Q+ A    G+ ++            + 
Sbjct: 396 VAHKPIAEITPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKA 455

Query: 475 WEDAENFCRWMQENHPEHA 493
           +     + + ++ + P+  
Sbjct: 456 YTGIHRWHQSIKAHLPKEG 474


>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 907

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 115/653 (17%), Positives = 179/653 (27%), Gaps = 156/653 (23%)

Query: 34  AFGFDDHPVELWDCVHDP-----VMPQVLKEA--------LENTDVTIVAHNSYFERTVL 80
            +      V                P  L EA        L + D   V HN+     VL
Sbjct: 353 TWALGTGSVTEVALAASDGKAAWFDPTELDEADETAFRSWLSDPDRPKVFHNAKGAMRVL 412

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                    +        LA     P       +AL L        + L          +
Sbjct: 413 AEH---GWSVAGVGMDTALAAYLVKPGRRSFDLDALSL--------EYLHRELAPAAAAD 461

Query: 141 CLYDRNKPNHREAWRL-FGEYCKGDV--TVTREIFKRLEP--LSSKEQELWYLDQTINDR 195
                      EA  L        D+  T    +        L   E     L   +   
Sbjct: 462 GQLAFGADEGAEAEVLMVQARAILDLGETFESRLADVGAADLLRDMELPTSALLARMERH 521

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G   D      + Q+      +  +E  +   G   +    ++L+  LF E  L     T
Sbjct: 522 GIAADREHLQAMEQMFAGAVQQAVKEAHA-AAGREFNLGSPKQLQEVLFGELNLPKTKKT 580

Query: 256 ETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +T       +   L  Q    + V   R R      + +  L++ + +DGR+  T     
Sbjct: 581 KTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADGRIHTT----- 635

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
                                      +Q +       ++DP+   I         +R  
Sbjct: 636 --------------------------FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRG 669

Query: 368 VIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            +  EG + L+ AD + IE RV+A ++ +    +AF +GEDL+ T  A+ F+V  + V  
Sbjct: 670 FVVGEGFESLMTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDA 729

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K M   L Y   A    +      +       L                     
Sbjct: 730 EMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAAEARGL--------------------- 765

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                                        R   + + L +  ++    G       RR  
Sbjct: 766 -----------------------MDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRY 802

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                          LP                LN+  RQ  RE      L   I Q  +
Sbjct: 803 ---------------LP---------------DLNSDNRQ-RREAAERMALNAPI-QGTA 830

Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MT 652
            DI+   M+N  KA         ++L VHDEIV E    +   A  L    M 
Sbjct: 831 ADIVKIAMLNVDKALREADLKSRMLLQVHDEIVLEIAPGERAAAEELVRREMA 883


>gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
 gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
          Length = 879

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/516 (15%), Positives = 168/516 (32%), Gaps = 126/516 (24%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
             + E    L+   + E ++  +   +   G  V       ++   D     L+  + +L
Sbjct: 466 IKSLEEENMLDLYKNIEIKVARVLANMEFEGIHVSKKALDEMSHEFDERIKVLEGSIYTL 525

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF + GL +   T+T     +   ++L                
Sbjct: 526 A-GSEFNIASPKQLGVVLFEDLGLPVVKKTKTGYSTAVEVLEQL---------------- 568

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               +    +        +   +++   ++           +++ R  + H   +Q +T 
Sbjct: 569 ----QYKHDI--------IPLIMEYRTLTKLNSTYAKGL-VKDITREGKIHTRYEQTLTQ 615

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                + +P+   I         +R   I AS  + ++  D + IE RVLA +A ++  +
Sbjct: 616 TGRLSSVNPNLQNIPTRIEEGKKIRKAFIPASNDRVILSIDYSQIELRVLAHIAQDKGMI 675

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+   D++  T +    V   +VT   R   K +   + Y         +++  G+  
Sbjct: 676 DAFKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVNFGIVYGISDF---GLSNNLGITR 732

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                 +      E++ +          +  + A E                  H  V  
Sbjct: 733 KRAKEFI------EKYLETFKGVDKYMTDIVKFAKE------------------HGYVET 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L+N                   +RR +P +     KN +I  L            N R  
Sbjct: 769 LYN-------------------RRRSLPEI---NAKNKIIANL------------NARIA 794

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
           +NT                   +Q  + DI+   M++A      +K    ++L VHDE++
Sbjct: 795 MNTP------------------IQGTAADIIKIAMISAYNYIEESKVDAKLLLQVHDELI 836

Query: 634 CETPDT--DEFNASMLYHLMTSNPSWAKGLPLKAEG 667
            +      +EF    +  +M    +    + LKAE 
Sbjct: 837 FDVSKDILEEFT-DKMVAIMEEAAN--LDVKLKAEA 869


>gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
 gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
          Length = 1126

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 149/497 (29%), Gaps = 120/497 (24%)

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E  L  +   +   G  VD  + H  +  ++ E   +   L +   G   +     +L  
Sbjct: 727  ELPLICVLLDMERTGLHVDTDILHEQSMAINREINHMLATLHT-DIGETINIDSPMQLSH 785

Query: 242  WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             LF    L  + L + T +   S+N K      +                         D
Sbjct: 786  VLFDVWQLPTKGL-KKTKRGYFSTNAKTLETLSK------------------------QD 820

Query: 302  GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359
             R++  L +   ++         P Q  P   R H   +Q +       +SDP+   I  
Sbjct: 821  DRVQLILDYRERAKLKSTYLDALPAQIKP-DGRIHTTFNQTVAATGRLSSSDPNLQNIPT 879

Query: 360  ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
               +   VR     ++    +  D + IE R+LA ++ +   + AF +G D +  T +R 
Sbjct: 880  RSQLGHRVRKAFTVADDSVFLTCDYSQIELRLLAHLSQDPHLIAAFNSGADFHAATASRI 939

Query: 417  FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            F +    VT   R+  K +   + Y   A     +AS+  ++  T               
Sbjct: 940  FGIEQDAVTPQLRSRAKAVNFGIVYGQQAF---GLASSLKISRATA-------------- 982

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                       + +   + + +  V E  +E   AF +      
Sbjct: 983  ---------------------------KEMIDKYFEVYPCVREFLDE-SVAFARAHGYVP 1014

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
             +  RKR    +        +                   R+ +N               
Sbjct: 1015 TMYGRKRHIEHINASNFQLRSFA----------------ERTAMNHPM------------ 1046

Query: 597  LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH- 649
                  Q  + DI+   M+   K          +VL +HDE+  E    D    S L   
Sbjct: 1047 ------QGSAADIIKLAMIEVEKRLRASSLRAHLVLQIHDELDFEVATADCDALSELVKD 1100

Query: 650  LMTSNPSWAKGLPLKAE 666
             M    S    +PL A+
Sbjct: 1101 AMEHVVS--LRVPLIAD 1115


>gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
          Length = 950

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/507 (16%), Positives = 167/507 (32%), Gaps = 116/507 (22%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++   L S E  +  +   +   G  VD+     + + +  +     +       G   
Sbjct: 534 REQFALLESVEIPVSRVLYGMEHAGAQVDMNRLMNMREQLASDANHAQETAWQYA-GKRV 592

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           + +  ++L+  LF + GL     T+T      ++       A+Q   +R   + SA   L
Sbjct: 593 NLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAA-------ALQTLRDRSYDNDSACQFL 645

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           + L+       R +  L+ +  +     +G            R H   +Q +       +
Sbjct: 646 DALLL-----HREKNKLKQIVQTLIDATNGSD---------GRIHTTFEQTVAATGRLSS 691

Query: 352 SDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            DP+   I         +RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G
Sbjct: 692 VDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSG 751

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D +    +  + V   ++T DQR+  K M   L Y        +     G+        
Sbjct: 752 RDFHKYVASLVYGVPVDEITSDQRSHVKAMSYGLAYGLSTYGLSQ---QLGIKPGEA--- 805

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                 E +K+ +     +V E    L 
Sbjct: 806 --------------------------------------ESLKQQYFATFGKVHEYLESL- 826

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                         AR++     +Y              GR   +  + +          
Sbjct: 827 -----------VSTAREKGYTETIY--------------GRRRYFPGLKSP--------N 853

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCE-TPD 638
           +  R+      L   I Q  + DI+   M+ A  A +       I+L +HDE+V E  P 
Sbjct: 854 RAVRDAAERAALNAPI-QGSAADIMKIAMIRADDALHESGLASRIILQIHDELVVEIAPG 912

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKA 665
             E   +++   M      A  +PL  
Sbjct: 913 EAEQATALVKDAMEHAVDMA--VPLDV 937


>gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 181

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 94/177 (53%), Gaps = 5/177 (2%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK  L++
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
            ++  V HN   F+  +L    N+D+P+ R   TLV A ++GLP AL ++ +   ++S  
Sbjct: 64  PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            K +EGK LI  FCK         R     H E W  F  Y   D+   REI++ L 
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLP 180


>gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 893

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/565 (16%), Positives = 169/565 (29%), Gaps = 144/565 (25%)

Query: 131 ARFCKGETHECLYDRNKPNHREAW----RLFGEYCKGDVTVTREIFKRLEPLSSK----- 181
             +      E    R+ P    A     R F E       V  ++ + L           
Sbjct: 430 REYSLPTLSEKYLQRSLPVAESAQLSLLRDFSELAGQ-AQVVYDLHEVLFKQLETTQLAE 488

Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  +      +   G  + + + + L + +  E+ ++ +E      G   +    
Sbjct: 489 LYRGLELPVQADLYELEKHGVAMSMDVLNQLLEEL-TEQVEVAEEAAYNAIGHKVNLASP 547

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK---LNT 293
            +L+T LF E  +     T+        +  +L  +    F   + A R  +     +  
Sbjct: 548 MQLQTVLFEELQMPKTKKTKRGYTTNAEALVELYEKTQHPFLQHLLAHRDKIKMRQIVEG 607

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+ A+ +DGR+  T                                 Q +       +++
Sbjct: 608 LISAVGADGRIHTT-------------------------------FQQTVAATGRLSSTE 636

Query: 354 PDPLQIISD-----CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           P+   I +       +R   +   G   L+ AD + IE R++A M+ ++  ++AF++GED
Sbjct: 637 PNLQNIPARTAEGMRIRGAFVPGTGFDYLLTADYSQIEMRLMAHMSKDEALIEAFKSGED 696

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+ T  A  F V   +VT   R+  K     L Y   +    +     G+++        
Sbjct: 697 LHRTMAAMVFAVPVEEVTPALRSQIKATSYGLAYGLSSYGLSQ---QLGISVPEA----- 748

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                ++K+ + ++   V     E+   
Sbjct: 749 ------------------------------------RKLKEKYFERFGGVGRFLGEV--- 769

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            E+  E G       RR                 LP            N    N      
Sbjct: 770 VEEARERGFTATMMGRRRY---------------LP----------DLNSGNTN------ 798

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641
            R       L   I Q  + DI+   M    +          ++L VHDE+V E   ++ 
Sbjct: 799 LRAMAERAALNAPI-QGTAADIIKLAMHLVMRVLRERGLASRVLLQVHDELVLEVVASEL 857

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKA 665
                +   +M+        LPL  
Sbjct: 858 NEVIQIVTDVMSGAAE--LSLPLDV 880


>gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9]
          Length = 960

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 134/399 (33%), Gaps = 39/399 (9%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E         +   G  VD A    L ++   E  +++Q       G   + +  +
Sbjct: 550 LRDIELPTSVALFHMEHTGASVDRARLDELLEMFTDESNRMEQICYE-AAGHEVNLQSPK 608

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF E GL   + T+ T +   S+N                  ++      T  E 
Sbjct: 609 QLGVVLFEEMGL---NPTKKTKRGSYSTNA-----------------KALTTLYATSEEG 648

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
              +  L   L+    ++  +    +      PR  R H    Q +       + DP+  
Sbjct: 649 SRPNEFLGALLRHREVNKLRQIVQTLIDA-INPRDGRIHTTFTQTVAATGRLSSVDPNLQ 707

Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +RS  +  EG   L+ AD + +E R++A ++G++  +KAF++G D +  
Sbjct: 708 NIPNRNATGRDIRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADFHRY 767

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             +  + +   +VT DQR   K M   L Y        +     G+     A L      
Sbjct: 768 VASMVYGIPVDEVTPDQRNHVKAMSYGLAYGLSTYGLSQ---QLGIPSKEAAAL------ 818

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +           E+   +A    +  T   R ++ +    S      +   +     
Sbjct: 819 RSRYFQTFGKVHDYLESLVSNARNTGYTQTMFGR-RRYFPALTSANRVARDAAERGALNA 877

Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569
              G A    K   + +    +D N N  ++L     LV
Sbjct: 878 PIQGTAADIMKIAMIRVDRALRDGNLNSRIVLQIHDELV 916


>gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
 gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
          Length = 879

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/546 (14%), Positives = 175/546 (32%), Gaps = 132/546 (24%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RLEP------LSSKEQELWYLDQTIND 194
              R  P+  +    +       + + + + + +L            E ++  +   +  
Sbjct: 436 GAKRTLPSQ-DVINPYIAEVAESIALMKPLMEEKLAEENMTDLYKDIEIKVAKVLANMEF 494

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  V       ++   D     L+  + +L  G   +    ++L   LF + GL     
Sbjct: 495 EGIHVSKKALEEMSAEFDERIKTLESSIYTLA-GSEFNIASPKQLGVVLFEDLGLPPIKK 553

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
           T+T     +   ++L                             +S   +   +++   +
Sbjct: 554 TKTGYSTAVEVLEQLQ----------------------------HSHEIIPLIMEYRTIT 585

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
           +           +++ R  + H   +Q +       + +P+   I         +R   +
Sbjct: 586 KLNSTYAKGL-VKDITREGKIHTRYEQTLAQTGRLSSVNPNLQNIPTRIEEGKKIRKAFV 644

Query: 370 -ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
            ASE + ++  D + IE RVLA +A ++  + AF+   D++  T +    V+  QVT   
Sbjct: 645 PASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVSLDQVTSSM 704

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   + Y         +++  G+        +      +++ +          +
Sbjct: 705 RREAKAVNFGIVYGISDF---GLSNNLGITRKRAKEFI------DKYLETFKGVDKYMTD 755

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
             E                  + ++H  V  L+N                   +RR +P 
Sbjct: 756 IVE------------------FAKEHGYVETLFN-------------------RRRALPD 778

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
           +     KN ++  L            N R  +N+                   +Q  + D
Sbjct: 779 I---NAKNKIVANL------------NARIAMNSP------------------IQGTAAD 805

Query: 609 ILAEGMMNA------TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGL 661
           I+   M+N       TK    ++L VHDE++ +   D +E     +  +M    +    +
Sbjct: 806 IIKIAMVNVFEYLEKTKVDAKLLLQVHDELIFDVNKDIEEDFTKEMIKIMEEAAN--LDV 863

Query: 662 PLKAEG 667
            LKAE 
Sbjct: 864 QLKAEA 869


>gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191]
 gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191]
          Length = 862

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 145/430 (33%), Gaps = 58/430 (13%)

Query: 168 TREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            R++ ++   +  +  E  L  +   + + G  VD A     ++ ++ E   +  ++   
Sbjct: 448 ERDLKEKDQFKIFNELELPLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQNDINKD 507

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMR 282
               + +    ++L   LF +  L     T+T     + VL     L P   ++   R  
Sbjct: 508 AQREI-NVNSPKQLGALLFDQLKLPSVKKTKTGYSTDEEVLQQLVNLHPIVKKILEYRSN 566

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A   +    N ++ A   DG                              SR H  LDQ 
Sbjct: 567 AKLKSTYVDNLIMLA---DG-----------------------------NSRVHTYLDQT 594

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            T      +S P+   I         +R   +A  GK L+  D + I+ R+LA  + +  
Sbjct: 595 GTVTGRLSSSSPNLQNIPIRTPKGRMLRRAFVAEGGKTLLSVDYSQIDLRLLAHESQDSV 654

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF+ G D++  T A  F V    V+ + R+  K +   + Y  G      ++    +
Sbjct: 655 LVNAFKEGGDIHTKTAAEVFGVMREMVSDEMRSSAKAINFGIIYGQGP---MGLSQNLNI 711

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA--WRQKHS 515
           ++      +        +       R   + +   A E  ++ T    ++    ++    
Sbjct: 712 SVREAKEYIDN------YFAVYKGVREWIDKNIALARERGYVKTLLGHIRYLPEFKMGSG 765

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++       +A   TI  G +    K + +  ++       + ++L     L++     
Sbjct: 766 HMASF---AQRAAINTIVQGGSADVIK-KAMADIFNHYKGTEVKMLLQVHDELIFELPEK 821

Query: 576 NRSYLNTTTR 585
           N        +
Sbjct: 822 NLLKEAAVIK 831



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 19/148 (12%)

Query: 526 QAFEQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
           +  ++ I+N  A+    R  +   + + +++  +  +L   R L    +G+   ++ +  
Sbjct: 714 REAKEYIDNYFAVYKGVREWIDKNIALARERGYVKTLLGHIRYLPEFKMGS--GHMASFA 771

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTD 640
           ++              IVQ  S D++ + M +           ++L VHDE++ E P+ +
Sbjct: 772 QRA---------AINTIVQGGSADVIKKAMADIFNHYKGTEVKMLLQVHDELIFELPEKN 822

Query: 641 EF-NASMLYHLMTSNPSWAKGLPLKAEG 667
               A+++ + M         +PL AE 
Sbjct: 823 LLKEAAVIKNKMEHTIE--LKVPLLAEA 848


>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
 gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
          Length = 875

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/503 (16%), Positives = 161/503 (32%), Gaps = 123/503 (24%)

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              +  +  K     S  +  + ++   +   G  V+      L+     E  KL++E+ 
Sbjct: 459 QTILELKDNKTFRLYSDIDLPICFILDKMEKVGITVNANYLKQLSAEFGTEILKLEEEIF 518

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRM 281
           +L+ G   +    ++L   LF +  L     +    +        +KL+     + +  +
Sbjct: 519 ALS-GTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLL 577

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           R                               ++         P Q      R H    Q
Sbjct: 578 RW---------------------------RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQ 610

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      + +P+   I +       +R   IA EG KL+ AD + IE R+L+ +A   
Sbjct: 611 TSTTTGRLSSQEPNLQNIPTRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANID 670

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF   +D++  T  + FN+   ++T + R   K +   + Y   A     +A    
Sbjct: 671 ALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLN 727

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +     +  +K     + + + +    +M++                    KA+   +  
Sbjct: 728 VTNGEASEYIK-----KYFAEYKGVQEYMEQT-------------------KAFASSNGY 763

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V+  +                    ++  VPL++ KK K                     
Sbjct: 764 VTNFF-------------------GRKCFVPLIHDKKLKQF-----------------AE 787

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
           R+ +N                    +Q  + DI+   M+N        K    +VL +HD
Sbjct: 788 RAAINAP------------------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHD 829

Query: 631 EIVCETP-DTDEFNASMLYHLMT 652
           E++ E P D  E    ++  +M 
Sbjct: 830 ELLFEAPIDEVEIITPIIKKIME 852


>gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
 gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
          Length = 439

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 85/518 (16%), Positives = 173/518 (33%), Gaps = 133/518 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             +  ++L    + E  +  +   +   G  V       +   +DV  T L  ++  L  
Sbjct: 27  ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA- 85

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284
           G   +    ++L   LF +  L     T+T       VL   +  +P    + + R   S
Sbjct: 86  GEKFNINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-IS 144

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     +N L++ + +DG++                               H    Q +T
Sbjct: 145 KIQSTYINGLLDYIQADGKI-------------------------------HTRFLQTLT 173

Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398
                 + +P+   I         +R   +  +    L   D + +E RVLA ++ E+  
Sbjct: 174 TTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNM 233

Query: 399 LKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           L+AF+ G D++  T  + F ++   +VT   R   K +   + Y         +A   G+
Sbjct: 234 LEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGI 290

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                 ++A+NF     E +P                           
Sbjct: 291 SR----------------QEAQNFINNYFEQYP--------------------------- 307

Query: 518 SELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            ++ + +  A +   E G A  I  +RR +P ++ K           + RS         
Sbjct: 308 -QIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------E 351

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
           R+ +N+                   +Q  + DI+   M+         K    ++L +HD
Sbjct: 352 RTAINSP------------------IQGSAADIIKIAMIKMQSELEQRKLKTKMILQIHD 393

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           E++ + P  + +   +++  +M         +PL A+ 
Sbjct: 394 ELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIADA 429


>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
 gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
          Length = 853

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/496 (15%), Positives = 157/496 (31%), Gaps = 125/496 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G  +D  L   L+    +  + L++E+  L  G   +    ++L  
Sbjct: 455 ERPLVPVIYELEKTGIKIDTELLKQLSDEFSLSISNLEEEIFGLA-GCKFNIASSQQLGK 513

Query: 242 WLFLETGL----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            LF    +     +   +  T   VL++                             ++ 
Sbjct: 514 VLFEHMRIGGAKKMPSGSYCTNAEVLTALA---------------------------LDG 546

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +    ++   L++   ++           Q      R H +     T      +S+P+  
Sbjct: 547 VEVADKI---LKWRHFTKLKSTYTDALVRQVDANTGRVHTKYSMTATATGRLSSSNPNLQ 603

Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            I       + +RS  IA +G KL+ AD + +E ++LA +A  +   +AF  G D++V T
Sbjct: 604 NIPIRSKDGEKIRSAFIAEKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVT 663

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             + F     ++  + R   K +   + Y  G+     +A   G++              
Sbjct: 664 AQQIFG-EYYEIDYELRRRAKSINFGIIYGMGSY---GLARNIGISR------------- 706

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
               +A  +     + +PE              +K+                        
Sbjct: 707 ---REASEYVEQYFQYYPE--------------IKRYME--------------------- 728

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                    K+    +    +      +  P  R+L        R+ +N           
Sbjct: 729 ---TTKAYAKKHGYTITAFGRKCFIEGINSPK-RALSSV---AERAAINAP--------- 772

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNASML-YH 649
                    +Q  + DI+ + M+          ++L VHDE++ E P+    + + L   
Sbjct: 773 ---------IQGTAADIVKKAMVRLQDRLTQGTMLLQVHDELLVEVPEEHVLSVARLMKE 823

Query: 650 LMTSNPSWAKGLPLKA 665
           +M S       LPL  
Sbjct: 824 VMESAVV--FSLPLDV 837


>gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 916

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 106/616 (17%), Positives = 177/616 (28%), Gaps = 145/616 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + + D   V HN+      ++        I        LA     P       +AL +  
Sbjct: 402 IADPDRPKVLHNAK---GAMRVFPEHGWSIAGVTMDTALAAYLVKPGRRSFALDALSV-- 456

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK----GDVTVT--REIFKR 174
                 + L          +        +  EA  L  +       GD       E+  R
Sbjct: 457 ------EYLHRELAPAAAADGQLAFGADDTAEAEALMTQARAVLDLGDAFAEKLDEVGAR 510

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            E L   E     L   +   G   D      + Q       +  +E  + + G   +  
Sbjct: 511 -ELLHQVELPTSALLARLERHGIAADRDHLEAMEQQFAGAVQQAVKEAHA-SVGHEFNLG 568

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKL 291
             ++L+   F E  L     T+T       +   L  Q      V   R R        +
Sbjct: 569 SPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQARLRSTV 628

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++ + +DGR+  T                                 Q +       +
Sbjct: 629 EGLIKTIGADGRIHTT-------------------------------FSQTVAATGRLSS 657

Query: 352 SDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +DP+   +         +R   +  EG + L+ AD + IE RV+A ++ +   ++AF +G
Sbjct: 658 TDPNLQNVPVRTDEGRAIRHGFVVGEGFEALMTADYSQIELRVMAHLSEDAGLIEAFTSG 717

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+ T  ++ F V  + V  + R   K M   L Y   A    +      ++      L
Sbjct: 718 EDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIDPGEARGL 774

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           + T                                               R   + + L 
Sbjct: 775 MDT--------------------------------------------YFERFGGVRDYLR 790

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +  ++    G       RR                 LP                LN+  R
Sbjct: 791 RVVDEARATGYTETMLGRRRY---------------LP---------------DLNSDNR 820

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639
           Q  RE      L   I Q  + DI+   M+N  +A         ++L VHDEIV E    
Sbjct: 821 Q-RREAAERMALNAPI-QGTAADIVKVAMLNVDRALTEAGLASRMLLQVHDEIVLELAPG 878

Query: 640 DEFNASMLY-HLMTSN 654
           +      L    M++ 
Sbjct: 879 ERDRVETLVRAQMSAA 894


>gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672]
          Length = 791

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/564 (13%), Positives = 177/564 (31%), Gaps = 135/564 (23%)

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR--EAWRLFGEYCKGDVT 166
           LK + +  K+ + ++ +  E+I+     +T    +          E      E+    + 
Sbjct: 320 LKNIIKNHKIDTDQLVDF-EIISWLTDPDTGTIKFTDKDTLESFFEKILQKKEF----IL 374

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              + +   E  +  E ++ ++   +   G  ++   +  L +  +  +  L+ E +++ 
Sbjct: 375 DRMDKYNLWELYNKVEHKIIHILSEMEQTGILLN---SKQLKETDEKIKELLNNEKKAID 431

Query: 227 Y--GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK---LTPQAIQVFNNRM 281
              G   +    ++L   LF +  +      +T       S +    L P    +     
Sbjct: 432 EMLGEEINLNSPKQLSFVLFEKLKMVPFKKNKTGYSTDEDSLRNMIFLNPSYENLLK--- 488

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                                     L++   S+                  R H +  Q
Sbjct: 489 ------------------------SILKYREFSKLISTYTSKLSDYIDRSTGRIHTQFKQ 524

Query: 342 IITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      + +P+   I     +   +RS  ++ EG   +  D + IE R+LA ++ ++
Sbjct: 525 TGTATGRLSSVNPNLQNIPQKGELGSEIRSAFVSKEGYSFLSIDYSQIELRILAHISDDE 584

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               AFE   D++  T  + F +  +++T+D R I K +   + Y         ++   G
Sbjct: 585 NLKIAFEQDFDIHTMTAMKVFGLLESEITRDIRRIAKAVNFGIIYGLSPY---GLSRDVG 641

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +     +                                         K + + +  
Sbjct: 642 IPQSEAKIFI-----------------------------------------KKYFETYPN 660

Query: 517 VSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           V +    + +  ++   +G    I  + R +P +                          
Sbjct: 661 VKK---YMKEIVKKAENDGYVTTILNRPRFIPDI-------------------------- 691

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI------VLTVH 629
            +S  NT  ++  R          + +Q  + DI+   M+ + K    +      +L VH
Sbjct: 692 -KSANNTIKQRAERI------AINSPIQGSAADIIKLAMIKSDKYLKRMQIDGKLILQVH 744

Query: 630 DEIVCETPDT-DEFNASMLYHLMT 652
           DE+V E  D   +  +  +  +M 
Sbjct: 745 DELVFEINDKYIDKTSKDIKVIME 768


>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
 gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
          Length = 885

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/481 (14%), Positives = 153/481 (31%), Gaps = 122/481 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +   G   DV + + +++ +      L+  +         +    ++L  
Sbjct: 488 ELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDAD-EQFNINSPKQLGQ 546

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF +  L +   T+T         +KL  +++                           
Sbjct: 547 ILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLI-------------------------- 580

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360
             +   L++   S+               +  R H   +Q +T      +++P+   I  
Sbjct: 581 --IDNILEYRKISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRISSTEPNLQNIPI 638

Query: 361 ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R  +++SEG  LV +D + IE RVLA ++ + + + AF  G D++  T +  
Sbjct: 639 KTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASEV 698

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F+    +V+ + R++ K +   + Y           S  GL+ N      +  +  + + 
Sbjct: 699 FHTPYDEVSDELRSMAKAVNFGIVYG---------ISDYGLSQNLNIPRKEAKTYIDNYL 749

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                 +    +                                     + + +T     
Sbjct: 750 GHFQGIKKYMNDIIHVGT------------------------------EKGYVET----- 774

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
             +  +RR +P +                ++   R  G  R  LNT              
Sbjct: 775 --LLHRRRYIPEL--------------KAKNFNIRSFGE-RIALNTP------------- 804

Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                +Q  + DI+   M+              ++L +HDE+V + PD +    + +  +
Sbjct: 805 -----IQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE---VAEVCEI 856

Query: 651 M 651
           M
Sbjct: 857 M 857


>gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington]
 gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I
 gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
 gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 872

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 157/480 (32%), Gaps = 123/480 (25%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           ++   +   G  VD    H L+     E  K+++E+ +L+ G   +    ++L   LF +
Sbjct: 479 FILDKMEKIGIKVDANYLHQLSDEFGTEILKIEEEIFALS-GTKFNIASQKQLSEILFKK 537

Query: 247 TGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
             L   +    T          KKL+     +    +R                      
Sbjct: 538 MQLPSGNTLAKTSSYSTKAGILKKLSEDGYHIATLLLRW--------------------- 576

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC- 363
                    ++         P Q      R H    Q  T      + +P+   I +   
Sbjct: 577 ------RQLTKLKNTYTDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNIPTRSS 630

Query: 364 ----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R   IA +G KL+ AD + IE R+L+ +A      +AF   ED++  T  + FN+
Sbjct: 631 DGNKIRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQIFNL 690

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              ++T + R   K +   + Y   A     +A    ++  T A  +K     + + + +
Sbjct: 691 QKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVSNGTAAEYIK-----QYFAEYK 742

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
               +M +                    KA+  ++  V+  +                  
Sbjct: 743 GMQEYMVQT-------------------KAYANRNGYVTNFF------------------ 765

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             ++  +PL++ KK K                     R+ +N                  
Sbjct: 766 -GRKCFIPLIHDKKLKQF-----------------AERAAINAP---------------- 791

Query: 600 NIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
             +Q  S DI+   M+         K    ++L +HDE++ E P+ + E    ++  +M 
Sbjct: 792 --IQGTSADIIKIAMIKLAQEIEKRKLKTRLILQIHDELLFEVPEIELELVIPIIKKIME 849


>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 885

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/481 (14%), Positives = 153/481 (31%), Gaps = 122/481 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +   G   DV + + +++ +      L+  +         +    ++L  
Sbjct: 488 ELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDAD-EQFNINSPKQLGQ 546

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF +  L +   T+T         +KL  +++                           
Sbjct: 547 ILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLI-------------------------- 580

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360
             +   L++   S+               +  R H   +Q +T      +++P+   I  
Sbjct: 581 --IDNILEYRKISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRISSTEPNLQNIPI 638

Query: 361 ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R  +++SEG  LV +D + IE RVLA ++ + + + AF  G D++  T +  
Sbjct: 639 KTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASEV 698

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F+    +V+ + R++ K +   + Y           S  GL+ N      +  +  + + 
Sbjct: 699 FHTPYDEVSDELRSMAKAVNFGIVYG---------ISDYGLSQNLNIPRKEAKTYIDNYL 749

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                 +    +                                     + + +T     
Sbjct: 750 GHFQGIKKYMNDIIHVGT------------------------------EKGYVET----- 774

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
             +  +RR +P +                ++   R  G  R  LNT              
Sbjct: 775 --LLHRRRYIPEL--------------KAKNFNIRSFGE-RIALNTP------------- 804

Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                +Q  + DI+   M+              ++L +HDE+V + PD +    + +  +
Sbjct: 805 -----IQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE---VAEVCEI 856

Query: 651 M 651
           M
Sbjct: 857 M 857


>gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 824

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 143/460 (31%), Gaps = 69/460 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVM--PQVLKEAL----ENTDV 66
           DL   G+     D  ++ ++F +                 +  P  +  AL    EN  +
Sbjct: 408 DLETAGLDP-VHDP-IVGYSFSWQKGTAYYLPVRAPAGEPVLNPDTVLAALKPVFENPAI 465

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKME 124
               HN  F+  VL A     + +       ++A     P A         L        
Sbjct: 466 EKRNHNIKFDLIVLAAS---GVELAGVAGDSMVAHYLLDPGARAHGLDDLTLDELRHTNI 522

Query: 125 EGKELIARFCKGETHECLYDRNKPNHR------EAWRLFGEYCKGDVTVTREIFKRLEPL 178
             KELI    K  T   +      ++                 + D    RE++  L   
Sbjct: 523 SIKELIGTGKKQITMAEVPVARVRDYACEDADAALQLAAAFEPRLDAAGLRELYDTL--- 579

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +   +   G  VDV     L   +  E    + ++ +L  G   +   L++
Sbjct: 580 ---EVPLIRVLAEMEHVGIRVDVPFLVQLGVQMGEELAGYEGDIHALA-GRAFNIGSLKE 635

Query: 239 LKTWLFLETGLHLEDLT-----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           L+  LF E  L ++  T      +T Q  L     L          ++ A          
Sbjct: 636 LQKILFDELKLPVQKRTGIKNEPSTDQESLERLAAL----GHELPKKLLA---------- 681

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
                           +   S+       V P     +  R H   +Q         +S+
Sbjct: 682 ----------------YRKVSKLKSTYVDVLPALAD-KNGRVHTSFNQASAETGRLSSSE 724

Query: 354 PDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           P+   + +       +R   I  +G  LV AD + IE R+L    G+     AF    D+
Sbjct: 725 PNLQNVPTRTEQGAQLRKAFIPRDGWVLVTADYSQIELRLLTHFCGDDTLRAAFAEDRDV 784

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +    A+ F V   +VTK QR + K +   + Y   A   
Sbjct: 785 HTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLYGMSATGL 824


>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
 gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
          Length = 875

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 136/415 (32%), Gaps = 48/415 (11%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           ++   +   G  VD      L+     E  KL++E+ +L+ G   +    ++L   LF +
Sbjct: 482 FILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALS-GTKFNIGSPKQLGEILFEK 540

Query: 247 TGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
             L     +    +        +KL+     + +  +R                      
Sbjct: 541 MQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW--------------------- 579

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
                    ++         P Q      R H +  Q  T      + +P+   +     
Sbjct: 580 ------RQLTKLKNTYTDSLPKQIDNITHRVHTKFLQTSTTTGRLSSQEPNLQNVPIRSS 633

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
             + +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+
Sbjct: 634 EGNQIRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNL 693

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              ++T + R   K +   + Y   A     +A    +     +  +K      ++    
Sbjct: 694 QKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVTNGEASEYIK------KYFAEY 744

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   E     A  + ++     R K      H +  +L     +A       G    
Sbjct: 745 KGVQEYMEQTKAFASSNGYVTNCFGR-KCFVPLIHDK--KLKQFAERAAINAPIQGTNAD 801

Query: 540 ARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             K   + L   ++K K    L+L     L++    +    +    +++    T 
Sbjct: 802 IIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENSTN 856


>gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 865

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 160/493 (32%), Gaps = 127/493 (25%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             E+        + E  L  +   +   G   D A+   +    + +   L  ++  +  
Sbjct: 462 EMEMKDLF---DTIEMPLTRVLYAMEKEGVYCDKAVLQKIADETEAKINALSLQIYEIA- 517

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G+  +    ++L + L+ E GL       +T   VL     + P    +  +R +  +  
Sbjct: 518 GMEFNINSPKQLASVLYDELGLKAGKK-RSTAADVLEKLVHVHPIIPLLLEHR-KYQKIY 575

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                 L + + +DG++                                   +QI T   
Sbjct: 576 STYAIGLAKHILADGKIHTLF-------------------------------NQIQTQTG 604

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +S+P+   I         +R   +ASEG  L+ AD + IE R+LA MA E+  + AF
Sbjct: 605 RLSSSEPNLQNISVRNEEGKGIRKAFVASEGHVLLSADYSQIELRMLAHMADEEQMIDAF 664

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
               D++  T  + F+VA  +V  + R   K +   + Y         ++   G++    
Sbjct: 665 NHDIDIHTKTAMQIFDVAHDEVDANMRRSAKTVNFGIVYGQSDF---GLSEQLGISRKE- 720

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                          A  F      ++P+       I T  +       ++H  V  L+N
Sbjct: 721 ---------------AHTFIEKYFASYPK-------IKTFMDATIAYC-EEHGYVKTLYN 757

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                              +RR +  +    DKN ++                 R+ +N 
Sbjct: 758 -------------------RRRYIKEI---ADKNYMMREF------------GKRAAMNA 783

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
                              +Q  + D++   M++        K    ++L +HDE++ + 
Sbjct: 784 P------------------IQGSAADLIKMAMIHIYQKMQEEKVKSRMILQIHDELIFDV 825

Query: 637 PDTDEFNASMLYH 649
            + +    + +  
Sbjct: 826 CEDEIDKMTQIVE 838


>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
 gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
          Length = 849

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 91/519 (17%), Positives = 163/519 (31%), Gaps = 136/519 (26%)

Query: 167 VTRE--IFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           V RE  +  RL  +  + E+ L  +   + + G  VD  +   L++        L++E+ 
Sbjct: 432 VMREKLLSDRLFTVYYQLERPLVRVLYEMQEVGIEVDTEILKQLSRDFHGSIRSLEREIY 491

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKL-TPQAIQVF 277
            L  G   +     +L   LF   GL      +   + +T   VL+         A +V 
Sbjct: 492 GLA-GCKFNVASARQLGKLLFERMGLSSSTKKMPSGSYSTNAEVLTELAAEGVEIADKVL 550

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R                                 S+           Q      R H 
Sbjct: 551 KWR-------------------------------HFSKLKSTYVDALLRQVETGTERVHT 579

Query: 338 ELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWM 392
               + T      +S+P+   I         +R   +A EG KLV AD + +E +++A +
Sbjct: 580 SYSMVATATGRISSSNPNLQNIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHI 639

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT-KDQRAIGKVMELALGYQGGAKAFQKM 451
           AG Q    AF  G+D++  T  + F      VT  + R   K +   + Y         +
Sbjct: 640 AGVQAFRDAFAEGKDIHQVTAQQIFG---DDVTDPELRRRAKSINFGIIYGMSPF---GL 693

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   G+                  ++A  +      ++PE              +K    
Sbjct: 694 AKNVGITR----------------QEATQYVEQYFRSYPE--------------IKNYME 723

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                         +A+ +     +    RK                   +P   S  + 
Sbjct: 724 AI------------KAYARKYGYTRTAFGRKCY-----------------VPGINSAQHA 754

Query: 572 DVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTV 628
             G   R+ +N                    +Q  + D++ + M+N         I+L V
Sbjct: 755 IRGFAERAAINAP------------------IQGTAADVVKKAMINLRDKLEVGTIILQV 796

Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           HDE++ E P++   N + L   +M    S    +PL+ +
Sbjct: 797 HDELLVEVPESHVDNVAQLMKEVMEGVAS--FSVPLRVD 833


>gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 896

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 92/518 (17%), Positives = 156/518 (30%), Gaps = 129/518 (24%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           T E  K L  LS  E  L  L   +   G  VD  +   L+  +  +  K  +       
Sbjct: 477 TLEESKELGLLSDMEMPLARLLGDMEATGIGVDTGVLSDLSAELGADVEKARRGAWE-AA 535

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ------AIQVFNNRM 281
           G   +    ++L+  LF    L     T+T       +   L  +      A   F   +
Sbjct: 536 GREVNLSSPKQLQELLFDHFALPKTKKTKTGYTTNAEALADLWAKTEASGGAGHRFLGYL 595

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            A R  +     +   + + G                               R H    Q
Sbjct: 596 LAHRDRIKLKQMVDSLIATVG----------------------------ADERIHTTFSQ 627

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASEGK-KLVVADLAGIEARVLAWMAGE 395
           +        +SDP+   I +       +R       G   L+ AD + IE R++A ++G+
Sbjct: 628 VAAATGRLASSDPNLQNIPARSPDGMRIRGAFTPGPGYASLMSADYSQIEMRLMAHLSGD 687

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF +GEDL+ T  +  F     QV+ ++R+  K     L Y   +     +A+  
Sbjct: 688 EALIEAFNSGEDLHRTMASMVFGTPVEQVSGEERSRIKATSYGLAYGLSSY---GLAAQL 744

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+ +   A L                                              +   
Sbjct: 745 GIAVPEAAALRD--------------------------------------------RYFE 760

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R  ++ + L     Q   +G       RR                 LP  RS        
Sbjct: 761 RFGKVRDYLEGLVAQARADGYTETMFGRRRY---------------LPDLRS-------- 797

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVH 629
                   + +  RE      L   I Q  + DI+   MMN   A         +++ +H
Sbjct: 798 --------SNRQRREMAERAALNAPI-QGSAADIVKIAMMNVASALANEGLATRLLVQIH 848

Query: 630 DEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           DE++ E  P   +    ++   M      A  +PL   
Sbjct: 849 DELLLEIAPGEADVAEKLVRERMEGAV--ALSVPLDVA 884


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/499 (15%), Positives = 154/499 (30%), Gaps = 127/499 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G   D+ +   +      + ++  +E+  L      +    ++L
Sbjct: 482 EMEMPLTTVLYHMEREGIRCDIDILDRIATETMAKISEAQKEIYVLAA-KEFNINSPKQL 540

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF + GL       T     L   +  +P    +   R + S+        L + + 
Sbjct: 541 AEVLFDDLGLPTGKKRSTAAGE-LEKLQGKSPIIDYILEYR-KLSKIYSTYAEGLKKYIQ 598

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            DG++                               H   +Q  T      +S+P+   I
Sbjct: 599 QDGKI-------------------------------HTIYNQSATQTGRLSSSEPNLQNI 627

Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   +   G  L+ +D   IE R+LA MA E   ++AF+ G D++  T  
Sbjct: 628 SVRDEQGKEIRKAFLPENGCVLISSDYHQIELRMLAHMANETSLIEAFKEGIDIHTKTAM 687

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F+    ++T   R   K +   + Y         ++   G++       +      E 
Sbjct: 688 DVFHKPQDEITAQDRRSAKTVNFGIVYGISDF---GLSEQLGVSRYEAHDFI------ER 738

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           +  A    R   +   +   E  ++ T C                               
Sbjct: 739 YYAAYPKIRIYMDQIVKDCEEKGYVETLCG------------------------------ 768

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                  +RR++P ++               ++   R+ G  R+ +N             
Sbjct: 769 -------RRREIPEIH--------------DKNHATREFG-KRAAMNAP----------- 795

Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASML 647
                  +Q  + D++   M++        K    ++L VHDE++   P  + +    ++
Sbjct: 796 -------IQGSAADLIKLAMIHIDQMMKDAKVKSKMILQVHDELIFNVPKEEVDVMTKLI 848

Query: 648 YHLMTSNPSWAKGLPLKAE 666
              M +       +PL AE
Sbjct: 849 NDGMVNAMH--LQVPLTAE 865


>gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches]
 gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches]
          Length = 608

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/667 (17%), Positives = 213/667 (31%), Gaps = 153/667 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D    G+  Y +     L  FG       +            +K ALE      V HN+ 
Sbjct: 41  DSETTGLDIYNDGFRCRLVQFGTPSEAW-VVPVERGGPYAGDVKRALEMVQ-GFVLHNAA 98

Query: 75  FERTVLKACFNLDI--PIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--------ME 124
           ++  V +    + +     +   T +LA     P      G    L             +
Sbjct: 99  YDLQVFERTLGVPMETMWPKVKDTRILAHLID-PRGKDEGGSGHSLEDLTRRYIDSAVAD 157

Query: 125 EGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179
             K L+A   K  +T +    +  P     ++L+      D  +   + ++L PL     
Sbjct: 158 NVKTLMADLAKANKTTKVNVWKKVPFEDPHYQLYS---GMDPILAARLIQKLAPLVKVSD 214

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E +L  +   +   G+ +DV     L+  + V+ +  ++    L YG        
Sbjct: 215 ELVENEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIA--LNYGCE-KVNST 271

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRV-------LSSNKKLTPQAIQVFNNRMRASRSAVL 289
           +++   L    G+ ++  T +  ++V       L  ++K    A  V   + +A +    
Sbjct: 272 DQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAVIEAK-KAGKWRKT 329

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            ++  ++  +S  R    +  L A RT R S    P Q LP                   
Sbjct: 330 WVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD---------------- 372

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R C +A EG ++   D    E RVLA ++ +Q  ++AF    DL+
Sbjct: 373 ------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDADLH 420

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           + T   +F     +   + R   KV+     Y GGA   + +A  TGL++ T   +V   
Sbjct: 421 LMTARAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGA---KTVAEQTGLDMATAQKVV--- 473

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                   + + +  V +L   L +   
Sbjct: 474 --------------------------------------AGFDRAYPEVQKLSQRLQR--- 492

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           + I NG             +            LP      Y       S LN   +  +R
Sbjct: 493 EAIRNG------------YITTPFIDGLGGRRLPVDPQRAY-------SALNYLIQSSSR 533

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT--VHDEIVCETP-DTDEFNASM 646
           + T                     ++    AG+   L   +HDEI+   P +  E+ A+ 
Sbjct: 534 DVT------------------CRALLRLHDAGFTPYLRLPIHDEILASVPAEQAEWGANR 575

Query: 647 LYHLMTS 653
           +  LM  
Sbjct: 576 IGELMAE 582


>gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
 gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
          Length = 904

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/484 (17%), Positives = 139/484 (28%), Gaps = 115/484 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  + +T+++RG  +D      L +  +    +  +E  ++  G   +    +
Sbjct: 496 LDELEQPLQRVLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAI-VGEEVNLASPK 554

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L+  LF    L       +       S   L        +     S      L    E 
Sbjct: 555 QLQVVLFETLALPTTRKISSGHSTDAESLTDLQESLDPESSGHQFLS-----WLLRFREM 609

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
               G L G  + + A                   SR H    Q         +++P+  
Sbjct: 610 SKLTGYLVGLDKVVDA------------------GSRVHTTFQQTAAATGRLASTEPNLQ 651

Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +R   +A EG + L+ AD + IE R++A ++ +   ++AF +GEDL+  
Sbjct: 652 NIPVRTAEGQRIRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDLHNF 711

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             +R F V+P  V    R+  K +   L Y   A    +    +                
Sbjct: 712 VASRVFGVSPDAVDPAMRSKTKAVSYGLAYGLSAFGLSRQLRISRAEATALRD------- 764

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                       R   + + LH   E  
Sbjct: 765 ----------------------------------------GYFERFGGVRDYLHHTVETA 784

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G       RR                 LP                L +  RQ  RE 
Sbjct: 785 RTTGYTETILGRRRY---------------LP---------------DLTSDNRQ-RREN 813

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                L   I Q  + DI+   M+              ++L VHDE+V E    +     
Sbjct: 814 AERVALNSPI-QGSAADIIKLAMLRVESRMRAAELSSRMLLQVHDELVVEVAAGELDQVR 872

Query: 646 MLYH 649
            +  
Sbjct: 873 EIVE 876


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 129/407 (31%), Gaps = 58/407 (14%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V +       + ++ +   L+ E+     G   S    +++   L+   GL  
Sbjct: 443 MEKAGIPVSLTRILEAKKTIEEKIAGLEAEIYREA-GQTFSILSPKQVGEVLYGRLGLPP 501

Query: 252 E------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
                      +T +  L     L P    + + R      +   L  + E   SDGRL 
Sbjct: 502 PRRTGKGSGAPSTDEEALEGLAALHPLPKLILSFRQLRKFLSTYLLP-MEEGRGSDGRLH 560

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD--- 362
           G                                 +Q +       +S P+   I +    
Sbjct: 561 GQF-------------------------------NQTVAATGRLSSSRPNLQNIPARTEL 589

Query: 363 --CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              VR C +A +G  L+ AD + IE R+LA  +G+ +  +AF  GED++  T A  F   
Sbjct: 590 GLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAALLFGEP 649

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT + R   K +   + Y   A +  +     G+       ++        +     
Sbjct: 650 ---VTSESRRRAKTINFGILYGMSAYSLSQ---DLGVEPAEAQGIID------RYFSVVA 697

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                 E   E A     I T   R++    +  S    +     +    ++  G A   
Sbjct: 698 GVGPYFEKIREEARRTGRIRTLLGRIRP-IPEIRSDNRNVREYGERMAVNSVLQGSAADL 756

Query: 541 RKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            K+  V L            L+L     L++    +    L+   R+
Sbjct: 757 VKKAMVDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLSAVVRK 803



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 593 YGGKL-TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA- 644
           YG ++   +++Q  + D++ + M++ ++A         ++L VHDE++ E  +    +  
Sbjct: 739 YGERMAVNSVLQGSAADLVKKAMVDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLS 798

Query: 645 SMLYHLMTSNPSWAKGLPLK 664
           +++   M      +  LP+ 
Sbjct: 799 AVVRKTMEGAIPLSVPLPVS 818


>gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
 gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
          Length = 879

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/502 (15%), Positives = 164/502 (32%), Gaps = 126/502 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E ++  +   +   G  V       ++   D     L+  + +L  G   +    ++L
Sbjct: 480 DIEIKVAKVLANMEYEGIHVSKKALEEMSAEFDERIKTLEASIYTLA-GSEFNIASPKQL 538

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              LF + GL     T+T     +   ++L                             +
Sbjct: 539 GVVLFEDLGLPPIKKTKTGYSTAVEVLEQLQ----------------------------H 570

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           S   +   +++   ++           +++ R  + H   +Q +       + +P+   I
Sbjct: 571 SHEIIPLIMEYRTITKLNSTYAKGL-VKDITREGKIHTRYEQTLAQTGRLSSVNPNLQNI 629

Query: 360 I-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   + AS+ + ++  D + IE RVLA +A ++  + AF+   D++  T 
Sbjct: 630 PTRIEEGKKIRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTA 689

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +    V+  +VT   R   K +   + Y         +++  G+                
Sbjct: 690 SDVNGVSLDEVTSSMRREAKAVNFGIVYGISDF---GLSNNLGITRK------------- 733

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
               A+ F     E        D ++    +     + ++H  V  L+N           
Sbjct: 734 ---RAKEFIDKYLETFK---GVDKYMTDIVD-----FAREHGYVETLFN----------- 771

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +     KN ++  L            N R  +N+           
Sbjct: 772 --------RRRALPDI---NAKNKIVANL------------NARIAMNSP---------- 798

Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET--PDTDEFNAS 645
                   +Q  + DI+   M+N       T     ++L VHDE++ +      +EF   
Sbjct: 799 --------IQGTAADIIKIAMVNVFEYLEKTNVDAKLLLQVHDELIFDVNKDIEEEFTKE 850

Query: 646 MLYHLMTSNPSWAKGLPLKAEG 667
           M+  +M    +    + LKAE 
Sbjct: 851 MI-KIMEEAAN--LDVQLKAEA 869


>gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle]
          Length = 608

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/667 (17%), Positives = 213/667 (31%), Gaps = 153/667 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D    G+  Y +     L  FG       +            +K ALE      V HN+ 
Sbjct: 41  DSETTGLDIYNDGFRCRLVQFGTPSEAW-VVPVERGGPYAGDVKRALEMVQ-GFVLHNAA 98

Query: 75  FERTVLKACFNLDI--PIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--------ME 124
           ++  V +    + +     +   T +LA     P      G    L             +
Sbjct: 99  YDLQVFERTLGVPMEAMWPKVKDTRILAHLID-PRGKDEGGSGHSLEDLTRRYIDSAVAD 157

Query: 125 EGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179
             K L+A   K  +T +    +  P     ++L+      D  +   + ++L PL     
Sbjct: 158 NVKTLMADLAKANKTTKVNVWKKVPFEDPHYQLYS---GMDPILAARLIQKLAPLVKVSD 214

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E +L  +   +   G+ +DV     L+  + V+ +  ++    L YG        
Sbjct: 215 ELVDNEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIA--LNYGCE-KVNST 271

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRV-------LSSNKKLTPQAIQVFNNRMRASRSAVL 289
           +++   L    G+ ++  T +  ++V       L  ++K    A  V   + +A +    
Sbjct: 272 DQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAVIEAK-KAGKWRKT 329

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            ++  ++  +S  R    +  L A RT R S    P Q LP                   
Sbjct: 330 WVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD---------------- 372

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R C +A EG ++   D    E RVLA ++ +Q  ++AF    DL+
Sbjct: 373 ------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDADLH 420

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           + T   +F     +   + R   KV+     Y GGA   + +A  TGL++ T   +V   
Sbjct: 421 LMTARAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGA---KTVAEQTGLDMATAQKVV--- 473

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                   + + +  V +L   L +   
Sbjct: 474 --------------------------------------AGFDRAYPEVQKLSQRLQR--- 492

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           + I NG             +            LP      Y       S LN   +  +R
Sbjct: 493 EAIRNG------------YITTPFIDGLGGRRLPVDPQRAY-------SALNYLIQSSSR 533

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT--VHDEIVCETP-DTDEFNASM 646
           + T                     ++    AG+   L   +HDEI+   P +  E+ A+ 
Sbjct: 534 DVT------------------CRALLRLHDAGFTPYLRLPIHDEILASVPAEQAEWGANR 575

Query: 647 LYHLMTS 653
           +  LM  
Sbjct: 576 IGELMAE 582


>gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C]
 gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C]
          Length = 483

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/487 (18%), Positives = 145/487 (29%), Gaps = 126/487 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E     L   +   G   D      + Q       +  +E  +   G   +    +
Sbjct: 80  LHEMELPTSELLARLERAGIAADRDHMEGMEQQFAGAVQQAVKEAHA-AVGHEFNLGSPK 138

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKLNTL 294
           +L+   F E  L     T+T       +   L  Q      V   R R      + +  L
Sbjct: 139 QLQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHELPVIMLRHREQAKLRVTVEGL 198

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           V+++ +DGR+                               H    Q         ++DP
Sbjct: 199 VKSIAADGRV-------------------------------HTSFSQTTAATGRLSSTDP 227

Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   +         +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL
Sbjct: 228 NLQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDL 287

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + T  ++ F V  +QV  + R   K M   L Y   A     +A    +       L++T
Sbjct: 288 HTTVASQVFGVERSQVDAEMRRKIKAMSYGLAYGLSAF---GLAQQLNIEPAEARGLMET 344

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                          R   + + L +  
Sbjct: 345 FF--------------------------------------------ERFGGVRDYLQRVV 360

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           ++    G       RR                 LP                LN+  RQ  
Sbjct: 361 DEARATGYTATVFGRRRY---------------LP---------------DLNSDNRQ-R 389

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEF 642
           RE      L   I Q  + DI+   M+   KA         ++L VHDEIV E    +  
Sbjct: 390 REAAERMALNAPI-QGTAADIVKVAMLRVDKAIAEAGLKSRMLLQVHDEIVLEIAPGEAE 448

Query: 643 NASMLYH 649
               L  
Sbjct: 449 RVEELVR 455


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/498 (18%), Positives = 172/498 (34%), Gaps = 67/498 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVA 70
           ID    G+  +++   + L        PV + DC     +P     LKE L       + 
Sbjct: 101 IDTETTGLDPHSD--RLRLIQISAPGIPVLVIDCAA--FLPDGFACLKELLNTPS-EKIF 155

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           HN+ F+   L        P+   +    L R  G P        A      K+++ ++  
Sbjct: 156 HNARFDLQFLMGIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADHYLGIKLDKTEQTG 215

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181
           +      T   L                 Y   D  +  +++  + PL ++         
Sbjct: 216 SWDSASLTGSQLA----------------YAALDAWILLKLYDVMNPLLARHGLGRTASI 259

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E             G  +D+       +  ++ R    Q   +L      S     +L  
Sbjct: 260 EFACVSAIARTEYDGINLDLE------KWDELRRKTEKQYDAALETLYTYSGTPSCQLTL 313

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM----RASRSAVLKLNTLVEA 297
           W                 +  L  N +  P  +++ N         SR ++   ++    
Sbjct: 314 W---------------GGEEALDVNFESNPYVLKLLNRYGIPVTSTSRRSLAPYHSQPL- 357

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                 ++   ++   S++        P Q  P   R H +  QI          +P+  
Sbjct: 358 ------VQALTEYRRHSKSLSSFLHPIPAQIHPVTHRLHPKYMQIGAWSGRMSCYNPNIQ 411

Query: 358 QIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
           QI  +   RSC  A +G+KL++AD + IE RV A ++G+     A + GEDL+  T +  
Sbjct: 412 QIPREADFRSCFTAPDGRKLILADYSQIELRVAAQISGDSRMKSACQKGEDLHALTASLI 471

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEW 475
            ++  +QVTK QR   K +   L +  GA+  ++ A    G+ +         ++  + +
Sbjct: 472 SSIPVSQVTKAQRQAAKAVNFGLIFGMGAEGLKQYAGQSYGVEMTLEEAEQFRSAFFQSY 531

Query: 476 EDAENFCRWMQENHPEHA 493
                +   ++E+HP   
Sbjct: 532 RGINWWHHDLRESHPLEG 549



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 597 LTENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLM 651
           L    VQ  + DIL   +         +   IV  VHDEI+ E P +  +    +L   M
Sbjct: 568 LANTPVQGTAADILKHALGLLASRIRGSDKKIVAIVHDEILMEVPVEEADDTVVLLKTAM 627

Query: 652 TSNP-SWAKGLPLKAEG 667
                +    +P +A+ 
Sbjct: 628 EEAAQAILPDVPCEADA 644


>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
 gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
 gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
          Length = 871

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/539 (15%), Positives = 166/539 (30%), Gaps = 140/539 (25%)

Query: 141 CLYDRNKPNHREAWRLFGEYCK---------GDVTVTREIFKRLEPLSSKEQELWYLDQT 191
            L  +N     E      E  K             +  +  K        +  + ++   
Sbjct: 423 GLPQKNLFEAVEKEATIEEAAKIVVGFIDLYQQTILELKDNKAFRIYKEIDLPVCFVIDK 482

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  VD    + L+     E  KL++E+  L+ G+  +    ++L   LF +  L  
Sbjct: 483 MEKAGIKVDANYLNQLSSEFGAEILKLEEEIFVLS-GMKFNIGSPKQLGEILFEKMQLPF 541

Query: 252 EDLTET-----TCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
              +       T   +L    +   P A  +   R                         
Sbjct: 542 GKTSAKANSYSTGADILEKLSEQGYPIADLLLRWRQL----------------------- 578

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
                   ++         P Q      R H    Q  T      + +P+   +      
Sbjct: 579 --------TKLKNTYTDSLPKQIDNITRRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSGE 630

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
            + +R   +A +G KL+ AD + IE R+L+ +A  +   +AF   +D++  T  + FN+ 
Sbjct: 631 GNKIRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIFNLQ 690

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             ++T + R   K +   + Y   A     +A    ++    A  +K     + + + + 
Sbjct: 691 KEELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVSNTEAAEYIK-----KYFAEYKG 742

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              +M+                     K++ Q +  V++ +                   
Sbjct: 743 VQEYMEAT-------------------KSFAQANGYVTDFF------------------- 764

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            ++  VPL+  K+ K                     R+ +N                   
Sbjct: 765 GRKCFVPLINDKRLKQF-----------------AERAAINAP----------------- 790

Query: 601 IVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
            +Q  + DI+   M          K    +VL +HDE++ E P  + E    ++  +M 
Sbjct: 791 -IQGTNADIIKIAMTLLDREIEKRKLKTRLVLQIHDELLFEAPIDEIETIMPIIKQIME 848


>gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 866

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 121/361 (33%), Gaps = 55/361 (15%)

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              +            ++  +  L      +  RG  +D      L++ ++ +   + ++
Sbjct: 449 ARSMEEKIAAQNMTRVMNEIDLPLIPSLIGMERRGIRLDREKMLALSRELERQLNAITEK 508

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-------AI 274
           +     G   +    +++   LF + GL +   T+T     +S  ++L            
Sbjct: 509 VYE-AAGCEINLNSPKQIGELLFEKLGLPVVKKTKTGYSTDVSVLEQLREICGARCEIPG 567

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           Q+   R    + A   +  L+ A   DG +  T + L                       
Sbjct: 568 QLLEYR-ELQKMASGFVQPLLSAAGGDGLIHSTFESLT---------------------- 604

Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARV 388
                    T      + DP+   +         +R C+I S  G     AD + IE RV
Sbjct: 605 ---------TGTGRLSSRDPNMQNLPTYSGWGQRIRECLIPSQPGHCFAAADYSQIELRV 655

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++G+   ++ F +  D++  T A  F +    VTK+ R   K +   L Y       
Sbjct: 656 LAHLSGDPQLIEIFNSDRDIHTETAAMIFGLPADAVTKELRRSAKTVSFGLIYGMSVF-- 713

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +AS  G + NT   ++        +  A    R   E   + ++E  +  T   R + 
Sbjct: 714 -GLASRLGTDRNTAFQIMDA------YFAALPGVREYMETSKKKSLEFGYTSTLFGRRRP 766

Query: 509 A 509
            
Sbjct: 767 M 767


>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
          Length = 861

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 149/432 (34%), Gaps = 53/432 (12%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              E+ +      + E  L ++   +   G    ++    + +    +   L  ++  + 
Sbjct: 457 KEMEMKELF---DTIEMPLTHVLYAMEKEGVVTSLSTLDEIARATSDKIDTLSAQIYEMA 513

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G+  +    ++L   L+ E GL       +T   VL    K  P    +  +R +  + 
Sbjct: 514 -GMEFNINSPKQLAQILYDELGLKAGKK-RSTAADVLEKLAKQHPIIPLLLEHR-KYQKI 570

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                  L + +  DG++                               H   +QI T  
Sbjct: 571 YSTYAVGLSKHVLKDGKI-------------------------------HTIFNQIQTQT 599

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +S+P+   I         +R   +ASEG  L+ AD + IE R+LA MA E+  + A
Sbjct: 600 GRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMADEEVMIDA 659

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T  + F+V    V  + R   K +   + Y         ++   G++   
Sbjct: 660 FNHGIDIHTKTAMQIFDVDHDSVDANMRRSAKTVNFGIVYGQSDF---GLSEQLGISRKE 716

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +    A   + + ++F     +   E+     ++ T   R ++  ++   +   + 
Sbjct: 717 AHAFIDKYFAS--YPNIKSFMDSTIQFCEENG----YVKTLFNR-RRYIKEISDKNYMMR 769

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
               +A       G A    K   + +   M++++    ++L     L++    +    +
Sbjct: 770 EFGKRAAMNAPIQGSAADLIKLAMIHIFERMRREQVKSRMILQIHDELIFDVWEDELEQM 829

Query: 581 NTTTRQLTREYT 592
            +   +  ++  
Sbjct: 830 KSIVEEGMQQAM 841



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 16/108 (14%)

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621
              R      S  N   R+  +            +Q  + D++   M++        +  
Sbjct: 752 FNRRRYIKEISDKNYMMREFGKRAA-----MNAPIQGSAADLIKLAMIHIFERMRREQVK 806

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL--PLKAEG 667
             ++L +HDE++ +  + +      +  ++      A  L  PL AE 
Sbjct: 807 SRMILQIHDELIFDVWEDE---LEQMKSIVEEGMQQAMKLRVPLIAEA 851


>gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
          Length = 921

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/488 (16%), Positives = 157/488 (32%), Gaps = 122/488 (25%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  +  K     S  +  + ++   +   G  VD      L+     E  KL++E+ +L
Sbjct: 507 ILELKDNKAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSTEFGAEILKLEEEIFAL 566

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283
           + G   +   L++L   LF +  L     +    +        +KL+     + +  +R 
Sbjct: 567 S-GTKFNIGSLKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW 625

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                         ++         P Q      R H    Q  
Sbjct: 626 ---------------------------RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTS 658

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   +       + +R   IA EG KL+ AD + IE R+L+ +A     
Sbjct: 659 TTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDAL 718

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF   +D++  T  + FN+   ++T + R   K +   + Y   A     +A    + 
Sbjct: 719 KQAFINKDDIHTQTACQIFNLQKHELTNEHRRKAKAINFGIIYGISAF---GLAKQLNVT 775

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               +  +K     + + + +    +M++                    KA+   +  V+
Sbjct: 776 NGEASEYIK-----KYFAEYKGVQEYMEQT-------------------KAFASSNGYVT 811

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             +                    ++  VPL++ KK K                     R+
Sbjct: 812 NFF-------------------GRKCFVPLIHDKKLKQF-----------------AERA 835

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
            +N                    +Q  + DI+   M+N        K    +VL +HDE+
Sbjct: 836 AINAP------------------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDEL 877

Query: 633 VCETPDTD 640
           + E P  +
Sbjct: 878 LFEAPIDE 885


>gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 932

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 83/486 (17%), Positives = 143/486 (29%), Gaps = 116/486 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L Y+ + +   G  +D        Q +  E     Q     + G   +    +
Sbjct: 529 LLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFD-SIGREVNLSSPK 587

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL---NTL 294
           +L+  LF +  L     T+T       + ++L       F   +   R  +  L     L
Sbjct: 588 QLQEVLFTQLELPKTKKTKTGYTTDAKALEELARYNPHPFLEALLYHRDRIKLLQIVRNL 647

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            E +  DGR+  T                                 Q +       + DP
Sbjct: 648 RERVADDGRIHTT-------------------------------FGQTVAATGRLSSIDP 676

Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           +   I         +R   +  +    L+ AD + IE R++A ++G++  L AF +GEDL
Sbjct: 677 NLQNIPARTVDGQKIREAFVPQKPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDL 736

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + +  A  + V P +VT  QR+  K     L Y   A     +A+   ++      L+ T
Sbjct: 737 HRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAY---GLAAQLNISQRDAKQLMDT 793

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                          R  ++   L+Q  
Sbjct: 794 YF--------------------------------------------ERFGKVREYLNQIV 809

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN-RSYLNTTTRQL 587
                 G     R RR                 LP  RS       N  R+ LN   +  
Sbjct: 810 ATATRVGYTETMRGRRRY---------------LPELRSTNRNVADNARRAALNAPIQGS 854

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
             +               +  +  +  +   +    ++L VHDE+V E    +      L
Sbjct: 855 AADLM------------KAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETERLETL 902

Query: 648 YHLMTS 653
                +
Sbjct: 903 VRQAMT 908


>gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
 gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
          Length = 950

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/502 (16%), Positives = 166/502 (33%), Gaps = 118/502 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L S E  +  +   +   G  VD+     +      +  +  +     + G   + +  +
Sbjct: 540 LKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWE-SAGERVNLQSPK 598

Query: 238 KLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           +L+  LF + GL     T++       ++ + L                         ++
Sbjct: 599 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTL---------------------YEHSLD 637

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
              ++  L   L+    ++  +    +    N PR  R H   +Q +       + DP+ 
Sbjct: 638 NDRANQFLGALLRHRETNKLKQIVQTLIDATN-PRDGRIHTTFEQTVAATGRLSSVDPNL 696

Query: 357 LQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G D + 
Sbjct: 697 QNIPNRNAAGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHK 756

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              +  + +   ++T DQR+  K M   L                GL+    A  +K + 
Sbjct: 757 YVASLVYGIPVEEITSDQRSHVKAMSYGLA--------------YGLSTYGLAQQLKISP 802

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            E ++  +     +V E    L      
Sbjct: 803 ------------------------------KEAESLRNQYFATFGKVHEYLESL------ 826

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                    AR++     +Y              GR   +  + +          +  R+
Sbjct: 827 ------VSTAREKGYTETIY--------------GRRRYFPGLKSP--------NRAVRD 858

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCE-TPDTDEFN 643
                 L   I Q  + DI+   M+ A+ +         I+L +HDE+V E  P   E  
Sbjct: 859 AAERAALNAPI-QGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQA 917

Query: 644 ASMLYHLMTSNPSWAKGLPLKA 665
            +++ + M    + A  +PL A
Sbjct: 918 TALVRNAMEHAVTMA--VPLDA 937


>gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 894

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 107/602 (17%), Positives = 173/602 (28%), Gaps = 135/602 (22%)

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           + FER +      +       +  +  A     GL   +   G  L+      +    L+
Sbjct: 382 APFERWLASDAPKIMSDAKLQVKAMRRAGLEVQGLAFDVLVAGWLLR-PGFTDKTLAALV 440

Query: 131 ARFC----KGETHECLY--DRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPLSSKEQ 183
           +R+            L           EAW     E+   +V   R     L  +   E 
Sbjct: 441 SRYLMEDLPEPDANQLVPETEALTAPVEAWYTLRVEHALREVLDERT----LGVMVDIEM 496

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
               +   +  RG   D A    L+  +    T L Q   +   G   +    ++L+  L
Sbjct: 497 PTLLVLVEMELRGVATDRAGLAELSAQLQERITDLAQRAFAEI-GKEINLGSPKQLQEVL 555

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+      +T       +   L       F + +   R A               +
Sbjct: 556 FDQLGMPKTRANKTGFSTDAGALADLQASNPHPFLDLLLEHRDAS--------------K 601

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           LR  +Q        R  G            R H    Q  T      ++DP+   I    
Sbjct: 602 LRQIIQ-----TLERGIGDD---------ERIHTTYVQTGTTTGRISSNDPNLQNIPVRT 647

Query: 361 --SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +RS +   EG   L+ AD + IE R++A ++G+   ++AF  GEDL+    +R F
Sbjct: 648 EEGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIF 707

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V PA V+ + R   K M   L Y   A    K                           
Sbjct: 708 GVEPADVSAEMRTKVKAMSYGLAYGLSAFGLSKQLRI----------------------- 744

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                        K+      +R   + + L Q  E+    G  
Sbjct: 745 ------------------------PSSEAKQLMTDYFARFGAVRDYLRQVVEEARAAGYT 780

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                      GR   + D       LN+  R L R+      L
Sbjct: 781 ETIF-----------------------GRRRPFPD-------LNSPNRVL-RDNAERAAL 809

Query: 598 TENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HL 650
              I Q  + DI+   M+              ++L VHDE++ E    +      +    
Sbjct: 810 NAPI-QGSAADIMKIAMIRIEADMRERDMASRMLLQVHDELILEVAAGEWDALEAIVTDR 868

Query: 651 MT 652
           M 
Sbjct: 869 MA 870


>gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
 gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
          Length = 904

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 88/507 (17%), Positives = 150/507 (29%), Gaps = 133/507 (26%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L      +   G  VD      L      +  +   +  +       +    ++L
Sbjct: 497 DLELPLARHLVAMEATGIAVDTDRLDALEGEFADQVAQATADAHAAIDDPGVNLGSPKQL 556

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA-----IQVFNNRMRASRSAV---LKL 291
           +  LF   GL     T+T       +   L  QA      + F   +   R        +
Sbjct: 557 QEVLFERLGLPKTKKTKTGYTTDADALVWLRAQASEGSTAETFLEALLRHRDVTRLRSTV 616

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L +A+++DGR+  T                                 Q I       +
Sbjct: 617 QGLQKAVDADGRIHTT-------------------------------YQQTIAATGRLSS 645

Query: 352 SDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            DP+   I         +R   +   G   L+ AD + IE R++A ++G++  ++AF  G
Sbjct: 646 VDPNLQNIPIRTEAGRRIREVFVVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAG 705

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+    ++ F VAP +VT + RA  K M   L Y   +     ++   G+     + L
Sbjct: 706 EDLHRYVGSKVFQVAPEEVTAEMRAKVKAMSYGLAYGLSSF---GLSKQLGITPAEASAL 762

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                         +  +R   + + L 
Sbjct: 763 --------------------------------------------MDEYFARFGGVRDYLR 778

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
              ++    G       RR                 LP                   +T 
Sbjct: 779 AVVDEARRTGYTETMLGRR---------------RPLPDL----------------ASTN 807

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PD 638
           +  RE      L   I Q  + D++   M+    A         ++L VHDE+V E  PD
Sbjct: 808 RQRREMAERMALNAPI-QGSAADVMKLAMLKVEDALDAQRLASRVLLQVHDELVLEVAPD 866

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKA 665
                 +++   M S       +PL  
Sbjct: 867 EGSAVEALVREAMGSALD--LDVPLDV 891


>gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
 gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
          Length = 918

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/659 (14%), Positives = 199/659 (30%), Gaps = 144/659 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH---NSYFERTVLKA 82
           +   +    F  D     +W       + + + + +    V +V +   N+ F   +L+ 
Sbjct: 339 DKPEIYAAYFNVDG---NIWLLDDMAQIHR-VLDIVAEEKVKVVGYDLKNALF--ALLQN 392

Query: 83  CFNLDIPIHRWICT----------LVLARSNGLPSALKAVGEALKLSSQK---MEEGKEL 129
              L  P    +            +   +       +    + LK   +K    ++ KE 
Sbjct: 393 GLPLFTPFFDVMLAYEVINNKGKYMDFYKILEDQLGIDVSDKLLKAKRKKTLTADDIKER 452

Query: 130 IARFCKGETHECLYDRNKP-----NHREAWRLFGEYCKG---DVTVTREIFKRLEPLSSK 181
            A  CK          N       +  E  R+  E       +     +++ +L+    +
Sbjct: 453 YANICKSLKKTNNDVVNAALGDVESSDENARIGHEDALLYLLETVNIFKVYDKLKSQIEE 512

Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +  ++ + G  +D     T    +     +L  ++  L  G   
Sbjct: 513 DDLQKVFYEIEMPLVEVIASMENTGVWLDTEFLKTYEAELSNIEAELLDKIYELA-GFEF 571

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF +  L  +  T+   +T   VL   +K  P    +   R + S+   
Sbjct: 572 NVNSPKQLGEVLFEKLNLEPKVKTKRGYSTNAEVLQKLRKTHPIIDLILEFR-KVSKLNS 630

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +   +    +DG++R     +GAS TGR +      Q +P  +               
Sbjct: 631 TYVRGFMGFKGTDGKVRPEFLQIGAS-TGRMACINPALQTIPVKTD-------------- 675

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                      +   +R    A + +  V AD + IE R+L  ++ ++  + AF++GED+
Sbjct: 676 -----------MGKRIRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINAFKSGEDI 724

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +              V+K  R+  K +   + Y         +++   ++       +  
Sbjct: 725 HEAVAVNVLGAQKGAVSKAVRSKAKAINFGVIYGMSDF---GLSNELEISRKDAKKYIDE 781

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             A               E     A +   + T   R++K   + +++   + N   +  
Sbjct: 782 YFAKH------RAVYEYMEAQKSIAKQTGAVRTETGRIRK-IPEINAQNIMVRNLGERLA 834

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
             +   G                                            +     +L 
Sbjct: 835 MNSPIQG--------------------------------------------MGADIMKL- 849

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
                      N+ +A+ +  L             IVL +HDE+V +   +D      L
Sbjct: 850 --------AMNNVYRAIQKQGL----------DAKIVLQIHDELVIDASVSDGEKVKKL 890


>gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304]
 gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304]
          Length = 976

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/547 (14%), Positives = 165/547 (30%), Gaps = 118/547 (21%)

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVT---VTREIFKRLEPLSSKEQELWYL------- 188
            +   + N+P+  +           D         + +   P+  K QE+  L       
Sbjct: 515 SQGSNEDNQPDQEDQAAQARRDA-RDAKECAYILALHQLFYPVLEKRQEISLLKDIELPV 573

Query: 189 ---DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
                 +   G  VD +    +      +  + +        G   + +  ++L+  LF 
Sbjct: 574 STVLARMELTGAGVDYSRLRNMYDSFAAQAAQAEHIAWDQA-GKQINLQSPKQLQAVLFD 632

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           + GL     T++  +   ++       A+Q    R   +  A   L  L+       R  
Sbjct: 633 DMGLEPTRKTKSGGRTTNAA-------ALQELYIRSVHNERANTFLGALLR-----HREV 680

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360
             L+ +  +     +             R H   +Q +       ++DP+   I      
Sbjct: 681 NKLKQIVQTLMDSVNTSD---------GRIHTTFEQTVAATGRLSSTDPNLQNIPNRNVE 731

Query: 361 SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R+  + S+G   L+ +D + +E R++A ++G++  ++AF +G D +    +  + V
Sbjct: 732 GREIRAAFVPSDGYLSLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYQV 791

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              Q+T DQR+  K M   L Y         +A   G++      L        ++    
Sbjct: 792 PLDQITPDQRSHIKAMSYGLAYGLSTY---GLAQQLGISPAQSDQL------KAKYFSTF 842

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                  E+    A +  +  T   R     R+    +     +L  A ++         
Sbjct: 843 GKVHDYLESLVSQAKKRGYTTTMFGR-----RRYFPDLLSSRRQLRDAAQRA-------- 889

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                                      +L     G+    +     +        G  + 
Sbjct: 890 ---------------------------ALNAPIQGSAADIMKIAMNKAATSLDEAGVKSR 922

Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658
            I+Q                        +HDE+V E    +E   + L    M      A
Sbjct: 923 IILQ------------------------IHDELVVELASGEEEEVTALVKNAMEEAVELA 958

Query: 659 KGLPLKA 665
             +PL  
Sbjct: 959 --VPLDV 963


>gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1]
 gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1]
          Length = 949

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/502 (16%), Positives = 165/502 (32%), Gaps = 118/502 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L S E  +  +   +   G  VD+     +      +  +  +     + G   + +  +
Sbjct: 539 LKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWE-SAGERVNLQSPK 597

Query: 238 KLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           +L+  LF + GL     T++       ++ + L                         ++
Sbjct: 598 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTL---------------------YEHSLD 636

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
              ++  L   L+    ++  +    +    N PR  R H   +Q +       + DP+ 
Sbjct: 637 NDRANQFLGALLRHRETNKLKQIVQTLIDATN-PRDGRIHTTFEQTVAATGRLSSVDPNL 695

Query: 357 LQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G D + 
Sbjct: 696 QNIPNRNAAGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHK 755

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              +  + +   ++T DQR+  K M   L                GL+    A  +K + 
Sbjct: 756 YVASLVYGIPVEEITSDQRSHVKAMSYGLA--------------YGLSTYGLAQQLKISP 801

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            E ++  +     +V E    L      
Sbjct: 802 ------------------------------KEAESLRNQYFATFGKVHEYLESL------ 825

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                    AR++     +Y              GR   +  + +          +  R+
Sbjct: 826 ------VSTAREKGYTETIY--------------GRRRYFPGLKSP--------NRAVRD 857

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCE-TPDTDEFN 643
                 L   I Q  + DI+   M+ A  +         I+L +HDE+V E  P   E  
Sbjct: 858 AAERAALNAPI-QGSAADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQA 916

Query: 644 ASMLYHLMTSNPSWAKGLPLKA 665
            +++ + M    + A  +PL A
Sbjct: 917 TALVRNAMEHAVTMA--VPLDA 936


>gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
 gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
          Length = 903

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 63/394 (15%), Positives = 144/394 (36%), Gaps = 45/394 (11%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E +L  +   +   G  +D       +  +  +  +L + +  ++     +    ++L  
Sbjct: 507 EMKLILILSKMEQEGIAIDPEYFREFSLELSDKLQELKKNIFKIS-EEEFNLNSPKQLAE 565

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF++  +     T+T     +   + L  +  ++                         
Sbjct: 566 ILFMKLNIEPVSKTKTGFSTNVDVLETLRDRGEKIAEY---------------------- 603

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360
                 L +   ++         P     R  R H   +Q         +S+P+   I  
Sbjct: 604 -----ILDYRKLTKLQSTYVDALPKLADERN-RLHTTFNQTGAATGRLSSSNPNLQNIPV 657

Query: 361 ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R   I+ +G  L+  D + IE RVLA ++ ++  +KA+  G DL+  T  + 
Sbjct: 658 KSDEGIKIRRGFISDKGNTLLAIDYSQIELRVLAELSKDETLIKAYSDGLDLHDLTAKKI 717

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F++    VT+ QR + K++  ++ Y         ++   G++       +K       + 
Sbjct: 718 FDIDTD-VTRSQRTMAKIVNFSIIYGKTPF---GLSKELGISQKDAKEYIK------RYF 767

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           +     + ++E   ++A E  ++ T   R K++     S+   +  +  +    T+  G 
Sbjct: 768 EQYPRVKELEEKIIKNAEETGYVKTYFGR-KRSVDGISSKNGNIKKQADRMAVNTVIQGT 826

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           A    K+  + +    KDKN++ + L     L++
Sbjct: 827 AADILKKVMIEIDKKIKDKNDIKMNLQVHDELIF 860


>gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 85/551 (15%), Positives = 169/551 (30%), Gaps = 64/551 (11%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+  LE+     + H+       L+      + +   +   ++      P+ L       
Sbjct: 369 LRPWLEDPKRYKLGHDCKASWVALRR---KGVALAGIVGDTMIESFLVEPNKL------- 418

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175
            +  +  +  KE + R    +       +      +        +C   V      F  +
Sbjct: 419 -IPHRLDQLTKEYLQRTIPPQKRILGSGKRLKRFSQLDAEALAPWCCTQVEAVAAAFVEI 477

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                 E            L ++   +   G  +D      +++       KL++ +  +
Sbjct: 478 RERLDAEGHRDTLEQVSLPLSWVLGQMELDGVAIDSEDLGKMSEEFGERLAKLEKTIFEI 537

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L   LF E  L +   T+T         ++L  +            +
Sbjct: 538 A-GREFNIASSKQLGAVLFDELELPVIKRTKTGYSTNAEVLERLAGKTKHP--------K 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             + K                 L+    ++       V      P   R H    Q    
Sbjct: 589 HTIAKY---------------LLEHRKLAKLINTYTDVLQAAVNPDSGRIHATFQQTAGV 633

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               IT++PD  +          VR   +   G KL+ AD + IE R+LA  + +   ++
Sbjct: 634 SGRLITTEPDLQRTPIKTPEGKRVRQAFVTRPGYKLISADWSQIELRLLAHFSSDAHLVE 693

Query: 401 AFETGEDLYVTTYARSFNV--APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           AF  G D++  T A+ F V   P +V+++QR +GK++  A  Y  GA A         + 
Sbjct: 694 AFAKGLDVHARTAAQLFEVGGGPEKVSREQRGVGKLVNFATIYGQGATAL---GQILKVP 750

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +        +    ++           A  D F+ T   R ++   +  S   
Sbjct: 751 RKQAQAYID--GYFAYYSGVRDWLDGTMA----QANVDGFVETLLGR-RRYIPELSSNNW 803

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +      +    T   G A    K   + +   ++  K    ++L     LV+       
Sbjct: 804 QDRQAGERIAANTPIQGSAADICKLAMLGIDRQLRAQKLTTRMLLQIHDELVFEAPVAEV 863

Query: 578 SYLNTTTRQLT 588
             +    R   
Sbjct: 864 EAVVAIVRGQM 874


>gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
          Length = 894

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 108/602 (17%), Positives = 176/602 (29%), Gaps = 135/602 (22%)

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           + FER +      +       +  +  A  R  GL   +   G  L+      +    L+
Sbjct: 382 APFERWLASDAPKVMSDAKVQVKAMRRAGLRVQGLAFDVLVAGWLLR-PGFTDKSLAALV 440

Query: 131 ARFC----KGETHECLY--DRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPLSSKEQ 183
           +R+            L           EAW     E+   +V   R     L  +   E 
Sbjct: 441 SRYLMEDLPEPDANQLVPETEALTAPVEAWYTLRVEHALREVLDERT----LGVMVDIEM 496

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
               +   +  RG   D A    L+  +    T L +   +   G   +    ++L+  L
Sbjct: 497 PTLLVLVEMELRGVATDRAGLAELSAQLQERITGLAERAFAEI-GKEINLGSPKQLQEVL 555

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+      +T       +   L       F + +   R A               +
Sbjct: 556 FDQLGMPKTRANKTGFSTDAGALADLQASNPHPFLDLLLEHRDAS--------------K 601

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           LR  +Q        R  G            R H    Q  T      ++DP+   I    
Sbjct: 602 LRQIIQ-----TLERGIGDD---------ERIHTTYVQTGTTTGRISSNDPNLQNIPVRT 647

Query: 361 --SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +RS +   EG   L+ AD + IE R++A ++G+   ++AFE GEDL+    +  F
Sbjct: 648 EEGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIF 707

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V PA V+   R   K M   L Y   A    K                           
Sbjct: 708 GVEPADVSPAMRTKVKAMSYGLAYGLSAFGLSKQLRI----------------------- 744

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                        K+      +R   + + L Q  E+    G  
Sbjct: 745 ------------------------PSSEAKQLMTDYFARFGAVRDYLRQVVEEARAAGYT 780

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                      GR   + D       LN+  R L R+      L
Sbjct: 781 ETIF-----------------------GRRRPFPD-------LNSPNRVL-RDNAERAAL 809

Query: 598 TENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET-PDTDEFNASMLYHL 650
              I Q  + DI+   M+              ++L VHDE++ E  P   +   +++   
Sbjct: 810 NAPI-QGSAADIMKIAMIRIEADMRERDMASRMLLQVHDELILEVAPGEWDALQAIVTDR 868

Query: 651 MT 652
           M 
Sbjct: 869 MA 870


>gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
 gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
          Length = 862

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 91/620 (14%), Positives = 188/620 (30%), Gaps = 148/620 (23%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEE---GKELIARF 133
           LK           W  T     +  +      L+  G  L  S   M         I  F
Sbjct: 347 LKDYLKDTSYPQAWNETSYRRTTYDIKRNAHLLEKNGIYLNFSDDVMIYTSLVDSTITSF 406

Query: 134 CK-----GETHECLYDRNKPNHREAWRLFGEYCK----GDVTVTREIFKRLEPLS----- 179
            K            Y+          +    YC       + V +E + +L+ ++     
Sbjct: 407 KKLKEKSEWQETIRYEEVYKKEELIEKNQAAYCASVLRNLIQVDQEYYPKLKEMNLISLY 466

Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  + + +  +G   +  +   + +    +  +L++ +  +  G   +    ++
Sbjct: 467 RDVELPLVTILKDMEQKGIRCEEKVLDHIAEGTLAKIQELEKAIYKV-VGHEFNLNSPKQ 525

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L   L+ E  + L+    +T    L   + L      +   R + S+        L + +
Sbjct: 526 LAVVLYDELQI-LKGKKRSTAAGELEKIQGLYTVVDDILAYR-KYSKLYSTYAEGLKKYI 583

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            +DG++                                   +Q  T      +S+P+   
Sbjct: 584 QADGKIHTV-------------------------------YNQAATQTGRLSSSEPNLQN 612

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +  EG  LV +D   +E R+LA MA     +KAF+   D++  T 
Sbjct: 613 ISVRDEEGREIRKAFLPEEGCVLVSSDYHQVELRILAHMAKVPNLIKAFQNEMDIHSQTA 672

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F+ +  +VT  QR   K +   + Y         +AS  G++       ++      
Sbjct: 673 MDLFDCSLEEVTPLQRRQAKTVNFGIVYGISDF---GLASQLGVSRFEARDFIE--KYYR 727

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            + + + +   +     E+     ++ T C                              
Sbjct: 728 VYPEIKTYMESVIHFCKENG----YVETLC------------------------------ 753

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR++P ++ K  +                     R+ +N            
Sbjct: 754 -------HRRREIPEIHDKNKQIQAF---------------GERAAMNAP---------- 781

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP-DTDEFNASM 646
                   +Q  + D++   M+              ++L VHDE++   P +  E   ++
Sbjct: 782 --------IQGTAADLIKLAMIQVREMIDENHLKAKMILQVHDELIFNVPLEEVEIMKTI 833

Query: 647 LYHLMTSNPSWAKGLPLKAE 666
           +   M +  S    +PL +E
Sbjct: 834 IQKGMETAMS--LDVPLTSE 851


>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
 gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
          Length = 1273

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 96/275 (34%), Gaps = 42/275 (15%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   I  RG  ++      L++ +  E + L+ E+  L  G   +    ++L+ 
Sbjct: 445 EKPLSAVLARIEARGISLNAEYLLQLSEELAKEISYLEAEIHRLA-GRSFNVNSRDQLEV 503

Query: 242 WLFLET-----GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            L+ E      G   +    +T    L       P   ++   R                
Sbjct: 504 VLYDELKLSAPGRKTQTGKRSTAASALEELLGQHPIIERILTYREL-------------- 549

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                            ++         P    P+  R H   +Q  T      + DP+ 
Sbjct: 550 -----------------TKLKSTYLDPLPKLIHPKTGRLHTRFNQTGTATGRLSSVDPNL 592

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I     I   +R    A+ G +LVVAD + IE RVLA ++G++  +  F  G D++  
Sbjct: 593 QNIPVRTEIGRRIRKAFRAAPGMRLVVADYSQIELRVLAHLSGDENLINVFREGRDIHTQ 652

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           T A  F + P +V  +QR   K +        G  
Sbjct: 653 TAAWMFGLEPDKVGAEQRRAAKCLVEGTKVATGRG 687



 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 602  VQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPS 656
            VQ  + D++   M             +VL VHDE++ E P D  E  A ++  +M    +
Sbjct: 1195 VQGTAADLMKLAMVKLQPELEPLEAHLVLQVHDELLVEAPADKAEAVAGVVREVMQQ--A 1252

Query: 657  WAKGLPLKA 665
            WA  +PL+ 
Sbjct: 1253 WALAVPLEV 1261


>gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
 gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
          Length = 951

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/526 (16%), Positives = 168/526 (31%), Gaps = 128/526 (24%)

Query: 164 DVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVDV 213
           D+ V RE+   L P+  + ++ W +             +   G  +D +    +      
Sbjct: 517 DLAVIRELAVTLGPVIDERRQYWLMRAIELPVSRVLHGMEQSGAKIDRSRLTDMRDRFAA 576

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQ 272
           +  +  +       G + + +  ++L+  LF++ GL     T+        ++ + L   
Sbjct: 577 DARQAQEMAWQYAGGEI-NLQSPKQLQKVLFVDMGLKPTKRTKNGSYTTNAAALQNL--- 632

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
                                 V+   ++G L   L+    ++  +    +    N    
Sbjct: 633 ------------------YIHSVDNEQANGFLGALLRHRETNKLKQIVQTLIDATN-KAD 673

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEA 386
            R H   +Q +       + DP+   I         +RS  +  EG + L+  D + +E 
Sbjct: 674 ERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAVGREIRSVFVPGEGYEALMSCDYSQVEL 733

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G++  ++AF +G D +    +  + V   Q+T DQR+  K M   L Y     
Sbjct: 734 RIMADLSGDEALIEAFRSGADFHKYVASMVYGVPVDQITGDQRSHVKAMSYGLAY----- 788

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    GL+    A  +                                     E +
Sbjct: 789 ---------GLSTYGLAQQLNIAQ------------------------------REAEAL 809

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K  +     +V +    L        E G       RR                  P+ R
Sbjct: 810 KNRYFDTFGKVHD---YLESLVATAREKGYTETIFGRRRY---------------FPALR 851

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----- 621
           S                T ++ R+      L   I Q  + DI+   M+ A +A      
Sbjct: 852 S----------------TNRMARDAAERAALNAPI-QGSAADIMKIAMIRAGQALDEAGV 894

Query: 622 -YDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
              I+L +HDE+V E  P   E    ++ + M      A  +PL  
Sbjct: 895 KSRIILQIHDELVVEIAPGESEQVTELIRNAMEHAVDLA--VPLDV 938


>gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
 gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
          Length = 340

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 103/311 (33%), Gaps = 20/311 (6%)

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRG----TLQFLGASRTGRWSGCVFPPQNLPRP 332
                +A ++   +  T  E + S           L+  G  +         P    PR 
Sbjct: 5   LKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLLINPRT 64

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H   +Q +T      +S+P+   I         +R   I  EG     AD + IE R
Sbjct: 65  GRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELR 124

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A ++ ++  + AF +  D++  T A+ + +    V  D R   K     + Y      
Sbjct: 125 IMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF- 183

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +A    ++      L+        + +     +   +   + A E  ++ T   R K
Sbjct: 184 --GLAERMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-K 234

Query: 508 KAWRQKHSRVSELWNELHQAFEQT-IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           +     +SR + +     +      I+   A I +          + +     ++L    
Sbjct: 235 RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHD 294

Query: 567 SLVYRDVGNNR 577
            L +    N +
Sbjct: 295 ELNFSVPVNEK 305


>gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 849

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/450 (16%), Positives = 144/450 (32%), Gaps = 68/450 (15%)

Query: 170 EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            I ++L+    KE+           L  +   +   G  +++     L+         L+
Sbjct: 428 AIHEKLKQRLFKEKLFTIYERFDKPLMKVIFNMEKNGILLNIHKLQELSDKFQQLIAVLE 487

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFN 278
            ++ +L  G   +    ++L   LF + GL+ +   ++          ++L  + +++ +
Sbjct: 488 NDIYNLA-GEKFNIASPKQLSDVLFNKMGLNKKKKLKSGSYSTNSVVLEELEIEGVEIAS 546

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                        L +   S+           Q  P   R H  
Sbjct: 547 K---------------------------ILDWRHLSKLKSTYTDALIKQVDPLDGRIHTN 579

Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +T      +S P+   I       + +R   IA +G K++ AD + IE R+LA +A
Sbjct: 580 FSTTVTATGRLSSSSPNLQNIPIRSKEGNLIRQTFIAPKGYKIISADYSQIELRLLAHVA 639

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
                 +AF  G+D++  T  + F V    +V +  R   K +   + Y         +A
Sbjct: 640 NVTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQLRRKAKSINFGIMYGISQF---GLA 696

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+ +   A  +  N     + + + +   +     +H   +   G  C    K    
Sbjct: 697 KRLGITIEEAAEYI--NYYFSCYPEIKVYMEKVVSTARQHGYVETLFGRRC--FVKDINN 752

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
               + +      +A       G A    K   + L    K      ++L     L+   
Sbjct: 753 TIPYLRQF---AERAAINAPLQGTAADIIKCAMIQLFDQLKAGK---IILQVHDELLVEV 806

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                      T +L ++        ENIV
Sbjct: 807 ENEKV----QETAKLMKDVM------ENIV 826


>gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 205

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/210 (40%), Positives = 111/210 (52%), Gaps = 13/210 (6%)

Query: 473 EEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              ++A    +W + NH P   + D     AC+  K+AWR  H  ++  W  L  A    
Sbjct: 1   MPIQEAVEALQWTKANHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDA 59

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT--TTR 585
           I + +            + ++  +  L L LPSGR L Y     D     SY+ T   TR
Sbjct: 60  IGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTR 114

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           + TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+
Sbjct: 115 KWTRITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAA 174

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 175 HLAALMATPPPWAQGLPLAAEGFQTHRYRK 204


>gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi]
 gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi]
          Length = 1085

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 103/681 (15%), Positives = 200/681 (29%), Gaps = 181/681 (26%)

Query: 37   FDDHPVELWD----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            F    VE  D        P++ +V  E +EN ++  + HN  +   +L    N  + +  
Sbjct: 493  FKGGKVEFLDSVNILKESPILSKVRTEIMENPNILKIGHNIKYHIKMLA---NYGVTVKN 549

Query: 93   WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKPNH 150
            +   +V++                     ++ E   L+        E       + K   
Sbjct: 550  FDDIMVMSYVLN--------CGKHGHEMDEIVENVLLLDPKEHIIPEKEVLGIGKKKVTL 601

Query: 151  REAWRLFG-EYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYC 198
             EA  +    +      +T++ +  L+    K           E+ L      I  +G  
Sbjct: 602  MEADIVSVVHFACQHADLTKQAYDVLKSALDKSPKLTQFYEGIEKPLVETLAGIEMKGVF 661

Query: 199  VDVALAHTLNQIVDVERTKL----------------DQELE------------------S 224
            +D      L ++ +  R K+                D+++E                   
Sbjct: 662  MDEP---ALVKMENEYREKIKAIGNKIREDAGYPTIDEDIEIPTSEEEIESMIIEMDEMK 718

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
                   +     +L   +F + G+  +   +T     +     L  + +Q         
Sbjct: 719  QEASEEFNINSNRQLGQVIFEKLGIGTKLRKKTKVGDYI-----LNAEVLQKL------- 766

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                        A       +  L++   ++              P   R H      +T
Sbjct: 767  ------------AAEGHSIAKHILEYRALTKLYSTYISGLRQHINPYTKRIHTTFQNALT 814

Query: 345  HLPTSITSDPDPLQII-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                  +  P+   I         +R C I  S+   ++  D + +E R+LA +A     
Sbjct: 815  VTGRLSSVMPNIQNIPVRTAEGKQIRRCFISPSDDYVIMKVDYSQVELRILAHIANIPVL 874

Query: 399  LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
              AF+  +D++  T ++ FNV   QV K  R   K +   + Y        K        
Sbjct: 875  KNAFKENKDVHAITASQVFNVPLDQVDKSTRNKAKAINFGIIYGMSEFGLSK-------- 926

Query: 459  LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                           + + A++F     + +P   I++    T        + +KH  V+
Sbjct: 927  -----------RIGVDTQAAKSFIEQYFKQYP--GIKNYMTKTIE------FCRKHGYVN 967

Query: 519  ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             L+N                   +R  +P +  +                  +     R+
Sbjct: 968  TLFN-------------------RRCWIPGIEDQGFGG--------------KSSFGERT 994

Query: 579  YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEI 632
             +NT                   +Q  S DI    M +  KA         +++ VHDEI
Sbjct: 995  SINTP------------------IQGTSADITKIAMNSLHKAFQEKGLRTRMIIQVHDEI 1036

Query: 633  VCETPDTDEFNAS-MLYHLMT 652
            V E P  +      ++  LM 
Sbjct: 1037 VFEVPKDEVETVEPIIKELME 1057


>gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
 gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
          Length = 1102

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/609 (14%), Positives = 176/609 (28%), Gaps = 152/609 (24%)

Query: 68   IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
            ++ HN  F+  +    F +  P H    +++LA  +    ++       K  +  M    
Sbjct: 599  LIGHNIKFDLHIAWHNFGIK-PKHTPQDSMLLAWLDDPSQSVSLDNLMKKHFNHNMIAFS 657

Query: 128  ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KRLEPLS---- 179
            +++    K  T + +  +              Y   D   T +++      L P      
Sbjct: 658  DIVP---KKATFDSIDIKT----------ASNYAAEDAAATFQLYFYFKNTLYPHLFTLA 704

Query: 180  -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
               E         + D G  ++ +    L         +L QE+     G+  +    ++
Sbjct: 705  KDLEFPFIRTLCAMEDCGIAINYSYFKNLKTTFSHTLQQLQQEIYEKA-GVSFNLNSPKQ 763

Query: 239  LKTWLFLETGLHLEDLTETTCQRV---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            +   LF    L  +   ++        L + K   P    +   R    +     +  ++
Sbjct: 764  VAEILFDTLKLDTKRKGKSGYSTDEATLLALKDSHPVVPLLLEYR-EIFKLFSTYIEPIL 822

Query: 296  EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
            +   ++ R+  T    G                               T+     +  P+
Sbjct: 823  KLGKNENRIYTTFLQTG-------------------------------TNTGRLSSKSPN 851

Query: 356  PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
               I         +R   ++ +G KL+  D + IE R+LA  +G++  L++F    D++ 
Sbjct: 852  LQNIPVRSEMGRSIRKGFVSRDGYKLLSLDYSQIELRLLAHFSGDKVLLESFHNNADIHA 911

Query: 411  TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             T    F  +    +   R+I K +   L Y  GA   +K++ T  +             
Sbjct: 912  ETAKLLFKDSNKDFS-LLRSIAKSINFGLIYGMGA---RKLSQTLNIT------------ 955

Query: 471  APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                            +   +  IED F                  V +       +  +
Sbjct: 956  ----------------QTEAKQYIEDYF-------------ATFPSVKQFLESQKDSILK 986

Query: 531  TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                   ++ RKR      Y         +     R                        
Sbjct: 987  N-GYSSTLLGRKR------YFDFFSATEFMRANFLREG---------------------- 1017

Query: 591  YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT-DEFN 643
                      I Q  + D++   M    K          ++L VHDE++ E  D+  E  
Sbjct: 1018 -------VNTIFQGSAADLIKLSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESL 1070

Query: 644  ASMLYHLMT 652
            +  L  +M 
Sbjct: 1071 SKELKEIME 1079


>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
 gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/556 (17%), Positives = 179/556 (32%), Gaps = 76/556 (13%)

Query: 33  FAFGFDDHPVELWDCVH---------DPVMP---QVLKEALENTDVTIVAHNSYFERTVL 80
             F  D H +   D                P     + E L ++ +  + +N       L
Sbjct: 346 ITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKELLIFL 405

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                 +I     I  ++L         L A    L L+        E+I       T+ 
Sbjct: 406 LNFLRTEITSASCIDDIMLMHYI-----LSAGKNELSLN--------EIIQ------TYN 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
             Y      H+  W                  K L      +  + Y+ + I + G  ++
Sbjct: 447 KSYSEQYSEHKVCWLKNTFDNLM---SELFKNKLLHCYYEIDLPICYILRNIENNGIKIN 503

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
           V L   L+  +  +   L+Q +  +  G   +    ++L   LF    L    +++ T  
Sbjct: 504 VPLLKDLSAQLKHKIDLLEQHIYQIC-GQEFNIASPKQLGEILFDVLKLPHAKVSQKTKS 562

Query: 261 -----RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 VL +  +   +   +     + ++     ++TL   +N++     T     ++ 
Sbjct: 563 YSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHTTLLQTSTT 622

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           T R S      QN+P  S    +                         VRS  +A  G K
Sbjct: 623 TSRLSSHSPNLQNIPIRSEYGLK-------------------------VRSAFVAPPGSK 657

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++ AD + IE R+L++ A  +     F  GED++ +T A+ F +   QVT++ R   K +
Sbjct: 658 ILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEENRRKAKAI 717

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y   A     +A    ++    A  +  N   +E+     +    ++   EH   
Sbjct: 718 NFGIIYGISAF---GLAKQLNISNTEAAQYI--NHYFQEYPAIRQYMHETKKFAVEHGYV 772

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
              IG  C          +S      N   +A         A    K   +    +   K
Sbjct: 773 KNMIGRRC-----YIPLINSSNLTTRNFAQRAAINAPIQSTASDIAKIAMIQYEKLIYSK 827

Query: 556 -NNLILMLPSGRSLVY 570
              + L+L     LV+
Sbjct: 828 YPAIKLLLQVHDELVF 843


>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
          Length = 850

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 152/500 (30%), Gaps = 131/500 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   + + G  VD  +   L+Q        L++E+  L  G   +     +L  
Sbjct: 451 ERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLA-GCTFNVASARQLGK 509

Query: 242 WLFLETGL-----HLEDLTETTCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLV 295
            LF   GL      +   + +T   VL+         A +V   R               
Sbjct: 510 LLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWR--------------- 554

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                             S+           Q      R H     I T      +S+P+
Sbjct: 555 ----------------HFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPN 598

Query: 356 PLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I         +R   +A EG KLV AD + +E +++A +AG Q    AF  G+D+++
Sbjct: 599 LQNIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHM 658

Query: 411 TTYARSFNVAPAQVT-KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  + F      VT  + R   K +   + Y         +A   G+            
Sbjct: 659 VTAQQIFG---DGVTDPELRRRAKSINFGIIYGMSPF---GLAKNVGITR---------- 702

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                 ++A  +      ++PE              +K                  +A+ 
Sbjct: 703 ------QEASQYVAQYFRSYPE--------------IKSYMEAI------------KAYA 730

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +     +    RK     +   +                        R+ +N        
Sbjct: 731 RKYGYTRTAFGRKCYISGINSEQHTVRGFA----------------ERAAINAP------ 768

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDTDEFNASML 647
                       +Q  + D++ + M+N         I+L VHDE++ E P++     + L
Sbjct: 769 ------------IQGTAADVVKKAMINLRNKLEVGAIILQVHDELLVEVPESHVDRVAKL 816

Query: 648 -YHLMTSNPSWAKGLPLKAE 666
              +M    +    +PLK +
Sbjct: 817 MKEVMEGVAN--FSVPLKVD 834


>gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 1003

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/535 (17%), Positives = 160/535 (29%), Gaps = 145/535 (27%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                       +    E   +L+     E  L Y+   +   G  V  AL   L+    
Sbjct: 555 QISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFS 614

Query: 213 VERTKLDQELESLTYGLV--------SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
               +  +   ++  G V         +   +++L+T LF   GL      ++       
Sbjct: 615 ARANQAQESARAIIGGEVATEDGEEPLNLASVKQLQTVLFETLGLPHTRKIKSGYSTDAE 674

Query: 265 S----NKKLTPQAIQVFNNRMRASRSAVLKLNTLVE----AMNSDGRLRGTLQFLGASRT 316
           S      K++P++         A+    +KL   VE    A   DGR+  T         
Sbjct: 675 SVTELLSKISPESDGAAFLGALAAYRDNIKLAQTVEGLQKAATEDGRVHTT--------- 725

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                                   Q         ++ P+   I         +R   I +
Sbjct: 726 ----------------------FQQGAASTGRLSSTAPNLQNIPIRTEEGRRIRGAFIVA 763

Query: 372 -------EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
                  E + L+ AD + IE R++  +A ++  + A+E GEDL+    +  F VAP  V
Sbjct: 764 PEPIDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEDV 823

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T +QR+  K M   L Y  G   F  +A    ++ +                        
Sbjct: 824 TPEQRSKVKAMSYGLAY--GLSRF-GLAKQLNISSDEA---------------------- 858

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                ++  + ++  RV      L    +Q  ++G       RR
Sbjct: 859 -------------------GELRTNYFKRFGRVGRF---LRGVLKQAHQDGYTETIFGRR 896

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            V               LP   S                     RE      L   I Q 
Sbjct: 897 RV---------------LPDLDSPNRV----------------RREAAERAALNAPI-QG 924

Query: 605 VSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMT 652
            + DI+   M+N  +          ++L VHDEI+ E    +   A  +L   M+
Sbjct: 925 TAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERVLVEEMS 979


>gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
 gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
          Length = 1046

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 146/411 (35%), Gaps = 40/411 (9%)

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E  L  +   + + G  +D          ++ +   L  ++  L  G   +    ++L  
Sbjct: 642  ESRLIPVLAQMEETGIKIDKKYFSEFQNELEEKINMLQSDIYKLADG-EFNIDSPQQLGE 700

Query: 242  WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             LF +  +     T+T     +   + +        + RM   +                
Sbjct: 701  VLFEKLQIPSGKKTKTGYSTNVEVLEMIANNRELTEDKRMIGKKL--------------- 745

Query: 302  GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
                  L++    +         P     +  R H   +Q  T      +++P+   I  
Sbjct: 746  ------LEYRAYKKLLSTYIEPIPKLAD-KEERIHTTFNQNGTSTGRLSSANPNLQNIPV 798

Query: 362  D-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                   +R+  ++ EG  L+  D + IE RVLA ++ ++  ++A++  +DL+  T  + 
Sbjct: 799  RTDDGIRIRTGFVSKEGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLTARKI 858

Query: 417  -FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
             F     ++++ +R+I KV+  ++ Y         ++   G+ +   +  + T    EE+
Sbjct: 859  FFKTEEDEISRHERSIAKVINFSILYGKTPF---GLSKELGITVQEASQYITT--YFEEY 913

Query: 476  EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                 F   + E    H   + F GT     ++     ++    +  +  +    T+  G
Sbjct: 914  PRVRKFLDIVTETAKLHGFVETFYGT-----RRYISGINATNKNVQAQAVRMAVNTVVQG 968

Query: 536  KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTR 585
             A    K+  + L    K+  N+ ++L     L++       + Y+    +
Sbjct: 969  TAANIIKKVMIELHEEFKNDENIKMLLQVHDELIFEVRDEFAKEYMEKIEK 1019



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 597  LTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHL 650
                +VQ  + +I+ + M+             ++L VHDE++ E   +  +     +  +
Sbjct: 961  AVNTVVQGTAANIIKKVMIELHEEFKNDENIKMLLQVHDELIFEVRDEFAKEYMEKIEKI 1020

Query: 651  MTSNPSWAKGLPLKAEG 667
            M +   + K +PLKA G
Sbjct: 1021 MENTVKFKK-VPLKANG 1036


>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
 gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
          Length = 853

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 152/500 (30%), Gaps = 131/500 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   + + G  VD  +   L+Q        L++E+  L  G   +     +L  
Sbjct: 454 ERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLA-GCKFNVASARQLGK 512

Query: 242 WLFLETGL-----HLEDLTETTCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLV 295
            LF   GL      +   + +T   VL+         A +V   R               
Sbjct: 513 LLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWR--------------- 557

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                             S+           Q      R H     I T      +S+P+
Sbjct: 558 ----------------HFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPN 601

Query: 356 PLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I         +R   +A EG KLV AD + +E +++A +AG Q    AF  G+D+++
Sbjct: 602 LQNIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHM 661

Query: 411 TTYARSFNVAPAQVT-KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  + F      VT  + R   K +   + Y         +A   G+            
Sbjct: 662 VTAQQIFG---DGVTDPELRRRAKSINFGIIYGMSPF---GLAKNVGITR---------- 705

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                 ++A  +      ++PE              +K                  +A+ 
Sbjct: 706 ------QEASQYVAQYFRSYPE--------------IKNYMEAI------------KAYA 733

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +     +    RK     +   +                        R+ +N        
Sbjct: 734 RKYGYTRTAFGRKCYISGINSEQHTVRGFA----------------ERAAINAP------ 771

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDTDEFNASML 647
                       +Q  + D++ + M+N         I+L VHDE++ E P++     + L
Sbjct: 772 ------------IQGTAADVVKKAMINLRNKLEVGAIILQVHDELLVEVPESHVDRVAKL 819

Query: 648 -YHLMTSNPSWAKGLPLKAE 666
              +M    +    +PLK +
Sbjct: 820 MKEVMEGVAN--FSVPLKVD 837


>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
 gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
          Length = 864

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 152/500 (30%), Gaps = 131/500 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   + + G  VD  +   L+Q        L++E+  L  G   +     +L  
Sbjct: 465 ERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLA-GCTFNVASARQLGK 523

Query: 242 WLFLETGL-----HLEDLTETTCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLV 295
            LF   GL      +   + +T   VL+         A +V   R               
Sbjct: 524 LLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWR--------------- 568

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                             S+           Q      R H     I T      +S+P+
Sbjct: 569 ----------------HFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPN 612

Query: 356 PLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I         +R   +A EG KLV AD + +E +++A +AG Q    AF  G+D+++
Sbjct: 613 LQNIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHM 672

Query: 411 TTYARSFNVAPAQVT-KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  + F      VT  + R   K +   + Y         +A   G+            
Sbjct: 673 VTAQQIFG---DGVTDPELRRRAKSINFGIIYGMSPF---GLAKNVGITR---------- 716

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                 ++A  +      ++PE              +K                  +A+ 
Sbjct: 717 ------QEASQYVAQYFRSYPE--------------IKNYMEAI------------KAYA 744

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +     +    RK     +   +                        R+ +N        
Sbjct: 745 RKYGYTRTAFGRKCYISGINSEQHTVRGFA----------------ERAAINAP------ 782

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDTDEFNASML 647
                       +Q  + D++ + M+N         I+L VHDE++ E P++     + L
Sbjct: 783 ------------IQGTAADVVKKAMINLRNKLEVGAIILQVHDELLVEVPESHVDRVAKL 830

Query: 648 -YHLMTSNPSWAKGLPLKAE 666
              +M    +    +PLK +
Sbjct: 831 MKEVMEGVAN--FSVPLKVD 848


>gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
 gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
          Length = 864

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 152/500 (30%), Gaps = 131/500 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   + + G  VD  +   L+Q        L++E+  L  G   +     +L  
Sbjct: 465 ERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLA-GCKFNVASARQLGK 523

Query: 242 WLFLETGL-----HLEDLTETTCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLV 295
            LF   GL      +   + +T   VL+         A +V   R               
Sbjct: 524 LLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWR--------------- 568

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                             S+           Q      R H     I T      +S+P+
Sbjct: 569 ----------------HFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPN 612

Query: 356 PLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              I         +R   +A EG KLV AD + +E +++A +AG Q    AF  G+D+++
Sbjct: 613 LQNIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHM 672

Query: 411 TTYARSFNVAPAQVT-KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  + F      VT  + R   K +   + Y         +A   G+            
Sbjct: 673 VTAQQIFG---DGVTDPELRRRAKSINFGIIYGMSPF---GLAKNVGITR---------- 716

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                 ++A  +      ++PE              +K                  +A+ 
Sbjct: 717 ------QEASQYVAQYFRSYPE--------------IKNYMEAI------------KAYA 744

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +     +    RK     +   +                        R+ +N        
Sbjct: 745 RKYGYTRTAFGRKCYISGINSEQHTVRGFA----------------ERAAINAP------ 782

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDTDEFNASML 647
                       +Q  + D++ + M+N         I+L VHDE++ E P++     + L
Sbjct: 783 ------------IQGTAADVVKKAMINLRNKLEVGAIILQVHDELLVEVPESHVDRVAKL 830

Query: 648 -YHLMTSNPSWAKGLPLKAE 666
              +M    +    +PLK +
Sbjct: 831 MKEVMEGVAN--FSVPLKVD 848


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 91/499 (18%), Positives = 171/499 (34%), Gaps = 70/499 (14%)

Query: 12   SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKEALENTDVT 67
              +D+   G+  + ED  + L      D P  + D    PV        L + L +  V 
Sbjct: 1059 CTLDIETTGLN-HRED-RIRLLQISTPDQPSVVIDVFKVPVPTLKECTWLVKLLGSQAV- 1115

Query: 68   IVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
             V HN  F+   L    FN+  PI     T++ A+            +   ++ + +   
Sbjct: 1116 KVLHNGKFDINFLSHNGFNVKGPIF---DTMIAAKLLSATR-FNWSCKLGHVAERYLNIV 1171

Query: 127  KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
             +   +F          D         +     Y   D  V   ++  L+     E+   
Sbjct: 1172 LDKSQQFS---------DWTL---DPLFEEQVIYASRDTAVLLPLYFILQEKLKAERLDM 1219

Query: 187  YLDQT---------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--- 234
              D           +   G  VD+    +L   +D E     + L   T G+ S+     
Sbjct: 1220 IADIENKCVLAVCQMEQNGIKVDLDKLKSLQAALDKENETAMKHLGD-TLGVSSNPNFNY 1278

Query: 235  -CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
                ++   L  +    + D T     +  S                      +    + 
Sbjct: 1279 NSQRQILQALQQQ---KVMDKTRRGLIQDTSE------------------RTLSRNTYHP 1317

Query: 294  LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
             ++A+          ++   ++         P        R +  ++QI          +
Sbjct: 1318 AIQALR---------EYRKTNKAVTAFTEKIPNHIDSATGRIYPNINQIGAESGRFSCDN 1368

Query: 354  PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            P+  QI  D   R C IA +G KLV+AD + IE R+ A +A ++  ++A+ +GEDL+  T
Sbjct: 1369 PNLQQIPRDSRFRECFIADKGNKLVIADFSQIELRIAADIAEDRRMIEAYNSGEDLHSLT 1428

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSA 471
             +   N   ++VTK++R + K +   L +      F+  A +  G+ L+  A     +S 
Sbjct: 1429 ASLVKNKPISEVTKEERQLAKAVNFGLIFGMSLAGFRNYAESCYGVVLSVPAAREIYDSF 1488

Query: 472  PEEWEDAENFCRWMQENHP 490
             + +     +   M+   P
Sbjct: 1489 FKSYSGITAWHERMKAAKP 1507



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 602  VQAVSRDILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654
            VQ  S DI  E M             ++L +HDEI+ E P+++   A  +L   M + 
Sbjct: 1533 VQGTSADITKEAMALLVDRVADISGKMILCIHDEIILEVPESNANKALEVLIETMETA 1590


>gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
          Length = 943

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/508 (15%), Positives = 156/508 (30%), Gaps = 118/508 (23%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++   L S E  + ++   +   G  VD      +     ++     +       G   
Sbjct: 527 REQFRLLQSIELPVSHVLFGMEQVGASVDFMRLTEMRDRFAIDARDAQETAWQFA-GSRV 585

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           + +  ++L+  LF + GL     T++       S+ + L      V N R          
Sbjct: 586 NLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLA--VRSVGNER---------- 633

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                    ++G L   L+    ++  +    +      P   R H   +Q +       
Sbjct: 634 ---------ANGFLTALLRHRETNKLKQIVQSLIDA-VNPDDGRIHTTFEQTVAATGRLS 683

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404
           + DP+   I         +RS  +  EG + L+ +D + +E R++A ++G+   ++AF +
Sbjct: 684 SVDPNLQNIPNRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRS 743

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D +    +  + +    +T DQR   K M   L Y         +A    ++      
Sbjct: 744 GADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTY---GLAQQLKISPGEA-- 798

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                  +R+K  +     +V E    L
Sbjct: 799 ---------------------------------------DRLKSQYFATFGKVHEYLESL 819

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                +  +     +  +RR  P +                                   
Sbjct: 820 VAGARE--KGYTETMFGRRRYFPGLQSPNRN----------------------------- 848

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPD 638
               R+    G L   I Q  + DI+   M++A+ A         I+L +HDE+V E   
Sbjct: 849 ---IRDAAERGALNAPI-QGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAP 904

Query: 639 TDEFNASMLYH-LMTSNPSWAKGLPLKA 665
            +    + L    M      A  +PL  
Sbjct: 905 GEAEQVTGLVRDAMEHAVDLA--VPLDV 930


>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
          Length = 875

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 142/438 (32%), Gaps = 48/438 (10%)

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              +  +  K     S+ +  + ++   +   G  VD      L+     E  KL++E+ 
Sbjct: 459 QTILELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIF 518

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRM 281
           +L+ G   +    ++L   LF +  L     +  T          +KL+     + +  +
Sbjct: 519 ALS-GTKFNIGSPKQLGEILFEKMQLPFGKASAKTSSYSTGAEILEKLSEHGYNIADLLL 577

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           R                               ++         P Q      R H    Q
Sbjct: 578 RW---------------------------RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQ 610

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      + +P+   +       + +R   IA EG KL+ AD + IE R+L+ +A   
Sbjct: 611 TSTTTGRLSSQEPNLQNVPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANID 670

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF   +D++  T  + FN+   ++T + R   K +   + Y   A     +A    
Sbjct: 671 ALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLN 727

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +     +  +K      E++  + +    +     +     F G  C          H +
Sbjct: 728 VTNGEASEYIK--KYFAEYKGVQEYMEQTKAFASSNGYVTNFFGRKC-----FVPLIHDK 780

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGN 575
             +L     +A       G      K   + L   ++K K    L+L     L++    +
Sbjct: 781 --KLKQLAERAAINAPIQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPID 838

Query: 576 NRSYLNTTTRQLTREYTY 593
               +    +++    T 
Sbjct: 839 EVEIITPIIKKIMENSTN 856


>gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010]
 gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010]
          Length = 944

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 156/508 (30%), Gaps = 118/508 (23%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++   L S E  + ++   +   G  VD      +     V+     +       G   
Sbjct: 528 REQFRLLQSIELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFA-GSRV 586

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           + +  ++L+  LF + GL     T++       S+ + L      V N R          
Sbjct: 587 NLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLA--VRSVGNER---------- 634

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                    ++G L   L+    ++  +    +      P   R H   +Q +       
Sbjct: 635 ---------ANGFLTALLRHRETNKLKQIVQSLIDA-VNPDDGRIHTTFEQTVAATGRLS 684

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404
           + DP+   I         +RS  +  EG + L+ +D + +E R++A ++G+   ++AF +
Sbjct: 685 SVDPNLQNIPNRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRS 744

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D +    +  + +    +T DQR   K M   L Y         +A    ++      
Sbjct: 745 GADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTY---GLAQQLKISPGEA-- 799

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                  +R+K  +     +V E    L
Sbjct: 800 ---------------------------------------DRLKSQYFATFGKVHEYLESL 820

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                +  +     +  +RR  P +                                   
Sbjct: 821 VAGARE--KGYTETMFGRRRYFPGLQSPNRN----------------------------- 849

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPD 638
               R+    G L   I Q  + DI+   M++A+ A         I+L +HDE+V E   
Sbjct: 850 ---IRDAAERGALNAPI-QGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAP 905

Query: 639 TDEFNASMLYH-LMTSNPSWAKGLPLKA 665
            +    + L    M      A  +PL  
Sbjct: 906 GEVEQVTGLVRDAMEHAVDLA--VPLDV 931


>gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 199

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 107/203 (52%), Gaps = 13/203 (6%)

Query: 480 NFCRWMQEN-HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              +W + N  P   + D     AC+  K+AWR  H  ++  W  L  A    I + +  
Sbjct: 2   EALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA 60

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYT 592
                     + ++  +  L L LPSGR L Y     D     SY+ T   TR+ TR  T
Sbjct: 61  -----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITT 115

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMT 652
           YGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM 
Sbjct: 116 YGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMA 175

Query: 653 SNPSWAKGLPLKAEGYESKRYRK 675
           + P WA+GLPL AEG+E+ RYRK
Sbjct: 176 TPPPWAQGLPLAAEGFETHRYRK 198


>gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 932

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 95/546 (17%), Positives = 178/546 (32%), Gaps = 120/546 (21%)

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
           F + +      D   P H     L        +   RE F  LE +   E  +  +   +
Sbjct: 481 FDEPDDSAQRNDNQLPRHTAIVGLLARKLADSLD-QREQFSLLESV---EIPVSRVLYGM 536

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD+    ++ + +  +     +       G   + +  ++L+  LF + GL   
Sbjct: 537 EHAGAQVDMNRLMSMREQLAADANYAQETAWQYA-GERVNLQSPKQLQKILFEDMGLKPT 595

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
             T+T      ++       A+QV  +R   +  A   L+ L+       R +  L+ + 
Sbjct: 596 KKTKTGSYTTNAA-------ALQVLRDRSCGNDRACQFLDALLL-----HREKNKLKQIV 643

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
            +     +             R H   +Q +       + DP+   I         +RS 
Sbjct: 644 QTLIDATNRSD---------GRIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSA 694

Query: 368 VIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            +  EG + L+ +D + +E R++A ++G++  ++AF +G D +    +  + V   ++T 
Sbjct: 695 FVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITP 754

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           DQR+  K M    G   G         T GL+                            
Sbjct: 755 DQRSHVKAMSY--GLAYGLS-------TYGLS---------------------------- 777

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
               +  I+        E +K+ +     +V E    L  +  +  +     I  +RR  
Sbjct: 778 ---QQLGIKPG----EAESLKRQYFATFGKVHEYLESLVSSARE--KGYTETIYGRRRYF 828

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
           P +                                    +  R+      L   I Q  +
Sbjct: 829 PGLKSPN--------------------------------RAVRDAAERAALNAPI-QGSA 855

Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAK 659
            DI+   M+ A  A         I+L +HDE+V E  P   E   +++   M      A 
Sbjct: 856 ADIMKIAMIRADDALREAGLASRIILQIHDELVVEVAPGEAERVTALVKDAMEHAVDMA- 914

Query: 660 GLPLKA 665
            +PL  
Sbjct: 915 -VPLDV 919


>gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 142/235 (60%), Gaps = 8/235 (3%)

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           D+  +T QR + ++  +     ++ + R+++  ++  K   L+++++ DGRLRGT QF G
Sbjct: 1   DMQASTLQRRV-NDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCG 59

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQIISDCVRSCVIA 370
           ASRTGRW+G +F P NLPRP+   + +D+ +  L          D +Q+ S  +R C+IA
Sbjct: 60  ASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIA 119

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTYARSFNVAPAQVT 425
            +GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY   YAR+FN+ P  VT
Sbjct: 120 PQGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVT 179

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           K QR IGKVMEL LGY GG  AF   A   GLNL+  A     N       +A +
Sbjct: 180 KAQRQIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAEAALPNIPHNVKREAIS 234


>gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae]
 gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 142/235 (60%), Gaps = 8/235 (3%)

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           D+  +T QR + ++  +     ++ + R+++  ++  K   L++++++DGRLRGT QF G
Sbjct: 1   DMQASTLQRRV-NDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCG 59

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQIISDCVRSCVIA 370
           ASRTGRW+G +F P NLPRP+   + +D+ +  L          D +Q+ S  +R C+IA
Sbjct: 60  ASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIA 119

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTYARSFNVAPAQVT 425
            +GKKLV++DL+ IE R+LAW+AGE WK+KAF       G+DLY   YAR+F + P  VT
Sbjct: 120 PQGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVT 179

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           K QR IGKVMEL LGY GG  AF   A   GL+L+  A     N       +A +
Sbjct: 180 KAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPHNVKREAIS 234


>gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I
          Length = 891

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 101/644 (15%), Positives = 199/644 (30%), Gaps = 155/644 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVGEA 115
           L+EAL +        N++F+          D+     + + + A+    L +      + 
Sbjct: 371 LEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP---LLSFLKAKYQVPLENIRIQDTQI 427

Query: 116 LKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           L       + G  E++  + K E       ++     E   L          V     KR
Sbjct: 428 LAFLKNPEKVGFDEVLKEYLKEELIPHEKIKDFKTKAEKLELLS--------VELNALKR 479

Query: 175 LEPLSSK--------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           L     K              E     +   +  +G+ +D      L Q    E   L++
Sbjct: 480 LCEYFEKGGLEENLLSLAREIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLER 539

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           ++  L  G+  +    ++L   L+ + GL       T  + +L    K  P    +   R
Sbjct: 540 QILELI-GVDFNLNSPKQLSEVLYDKLGLPKNKSHSTDEKSLLKILDK-HPSIALILEYR 597

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++        L+   + D ++  T                                 
Sbjct: 598 -ELNKLFNTYTTPLLRLKDKDDKIHTTFI------------------------------- 625

Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
           Q  T      +  P+   I         +R   IAS +   L+  D + IE R+LA  + 
Sbjct: 626 QTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQ 685

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF  G D+++ T    F      + K++R+I K +   L Y  G+   +K++ T
Sbjct: 686 DKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGS---KKLSET 739

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             ++LN     ++                                               
Sbjct: 740 LNISLNEAKSYIE--------------------------------------------AYF 755

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R   + + L++  E+ ++  KA     R  V       D               Y    
Sbjct: 756 KRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGAND---------------YVKGN 800

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
             R  +N                   I Q  + D+L  GM+  ++         ++L VH
Sbjct: 801 YLREGVNA------------------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVH 842

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE++ E  + +          + ++  +   +PL+   + +KR+
Sbjct: 843 DELIFEIEEKNAPELQQEIQRILNDEVYPLRVPLETSAFIAKRW 886


>gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 854

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 87/503 (17%), Positives = 163/503 (32%), Gaps = 131/503 (26%)

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +  ++   G  ++  +   +   +     ++ +E+ S   G   +    +++   
Sbjct: 456 MPLVPVLVSMEKSGIKLEEPVLQDVISDLKERLERIVEEITS-AAGESINLNSPKQVGCL 514

Query: 243 LFLETGLHLEDLTETTCQRV------LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           LF + GL     T+T           L+   +       +       S+ +      L+ 
Sbjct: 515 LFEKLGLPPVKKTKTGYSTDVTVLEQLAELPEPHNAVPSMLLEHRALSKMSSGFALPLMS 574

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           ++  DG +R T +                                  T      + DP+ 
Sbjct: 575 SVCGDGIIRSTFE-------------------------------SDTTGTGRLSSRDPNL 603

Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             +      SD ++S +I  E G+  V AD + +E RVLA ++GE+     F +G D++ 
Sbjct: 604 QNLPAYGEWSDRIKSSLIPREKGRCFVAADYSQVELRVLAHISGEKRLADIFRSGRDIHT 663

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V  + VTK+ R   K++   L Y   A     +A   G+  +          
Sbjct: 664 ETASMVFGVDSSMVTKELRRSAKMVTFGLLYGMSAF---GLAKRLGVGRSEA-------- 712

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            +R+   +      V      + ++ ++
Sbjct: 713 ---------------------------------DRIMSRYFAALPGVEA---YVTKSADE 736

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            I  G       R                      R L     GN R       R   R 
Sbjct: 737 AIAKGYTETLFGR---------------------IRPLEEVVTGNTR------DRGHIRR 769

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----IVLTVHDEIVCETPDT-DEFNA 644
                    + +Q  + D+  + M+  +++  +     +VL VHD IVCE P+   E   
Sbjct: 770 VA-----INSPIQGTAADLAKKAMIAVSRSFAEDPDVSMVLQVHDSIVCECPEERSEEVL 824

Query: 645 SMLYHLMTSNPSWAKGLPLKAEG 667
           + L  +M +  S A  +PL+ EG
Sbjct: 825 AELQEIMKNVASLA--VPLETEG 845


>gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
 gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
          Length = 892

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 101/644 (15%), Positives = 199/644 (30%), Gaps = 155/644 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVGEA 115
           L+EAL +        N++F+          D+     + + + A+    L +      + 
Sbjct: 372 LEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP---LLSFLKAKYQVPLENIRIQDTQI 428

Query: 116 LKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           L       + G  E++  + K E       ++     E   L          V     KR
Sbjct: 429 LAFLKNPEKVGFDEVLKEYLKEELIPHEKIKDFKTKAEKLELLS--------VELNALKR 480

Query: 175 LEPLSSK--------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           L     K              E     +   +  +G+ +D      L Q    E   L++
Sbjct: 481 LCEYFEKGGLEENLLSLAREIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLER 540

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           ++  L  G+  +    ++L   L+ + GL       T  + +L    K  P    +   R
Sbjct: 541 QILELI-GVDFNLNSPKQLSEVLYDKLGLPKNKSHSTDEKSLLKILDK-HPSIALILEYR 598

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++        L+   + D ++  T                                 
Sbjct: 599 -ELNKLFNTYTTPLLRLKDKDDKIHTTFI------------------------------- 626

Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
           Q  T      +  P+   I         +R   IAS +   L+  D + IE R+LA  + 
Sbjct: 627 QTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQ 686

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF  G D+++ T    F      + K++R+I K +   L Y  G+   +K++ T
Sbjct: 687 DKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGS---KKLSET 740

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             ++LN     ++                                               
Sbjct: 741 LNISLNEAKSYIE--------------------------------------------AYF 756

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R   + + L++  E+ ++  KA     R  V       D               Y    
Sbjct: 757 KRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGAND---------------YVKGN 801

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
             R  +N                   I Q  + D+L  GM+  ++         ++L VH
Sbjct: 802 YLREGVNA------------------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVH 843

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE++ E  + +          + ++  +   +PL+   + +KR+
Sbjct: 844 DELIFEIEEKNAPELQQEIQRILNDEVYPLRVPLETSAFIAKRW 887


>gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage]
          Length = 234

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 143/235 (60%), Gaps = 8/235 (3%)

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           D+  +T QR + ++  +     ++ + R+++  ++  K   L++++++DGRLRGT QF G
Sbjct: 1   DMQASTLQRRV-NDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFCG 59

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQIISDCVRSCVIA 370
           ASRTGRW+G +F P NLPRP+   + +D+ +  L          D +Q+ S  +R C+IA
Sbjct: 60  ASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIA 119

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTYARSFNVAPAQVT 425
            +GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   YAR+FN+ P  VT
Sbjct: 120 PQGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKNVT 179

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           K QR IGKVMEL LGY GG  AF   A   GL+L+  A     N   +   +A +
Sbjct: 180 KAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPHKVKREAIS 234


>gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 815

 Score =  199 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 106/311 (34%), Gaps = 50/311 (16%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVA----LAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L   E  L  L   +   G  VDV     L        D  +      +   T G+  + 
Sbjct: 526 LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASVAEETGGMQVNL 585

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---K 290
              ++L+  LF    +     T+T     + S + L  Q    F   + A R A      
Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDATKLRQT 645

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L+E +  D R+  T                                 Q         
Sbjct: 646 VEGLLETVAPDDRIHTT-------------------------------YSQTAAATGRLS 674

Query: 351 TSDPDPLQII-----SDCVRSCVIA----SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           +  P+   I         +R   +A     E   L+ AD + IE R++A ++ ++  ++A
Sbjct: 675 SLHPNLQNIPVRTEAGRRIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQA 734

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  GEDL+    ++ F V P +VT +QRA  K M   L Y   +     ++    ++++ 
Sbjct: 735 FREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSF---GLSKQLKISVDE 791

Query: 462 FAHLVKTNSAP 472
              L+K     
Sbjct: 792 ARGLMKGYFDR 802


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score =  199 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 108/532 (20%), Positives = 190/532 (35%), Gaps = 107/532 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LFID ET         G         + LF  G D+  + + D    P    VLKE +  
Sbjct: 25  LFIDTET--------TG-------DRIRLFQVG-DEERIFVIDLFDLPEAVDVLKELIAK 68

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEALKLSSQK 122
             V  V HN  F+   LK  + L I  +    T++ +   G    +L  V E  +L    
Sbjct: 69  KGV--VGHNLKFD---LKFMYPLGIVPYATFDTMIGSFLLGYERHSLSHVAE--RLLGYT 121

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176
           M++  +L             + R         +   EY   DV V RE+F ++       
Sbjct: 122 MDKSLQL-----------SDWSRTALT-----KQQIEYAATDVLVVRELFYKMREKLNAL 165

Query: 177 ----------------------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                                 P +  E         +   G  VD      L++  + +
Sbjct: 166 GETDRGEELLRTRTARVFGLTNPATVVEMAFVQEIARLEMNGIPVDEEEIERLSREYEKK 225

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
             KL  +               +++ ++L    GL L +  +      +S++ K   +  
Sbjct: 226 LQKLIMDFYIKYR---IDPMSPKQIGSFLTGRLGLELPETQK----GNISTDDKTLAEFS 278

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            V   R       +L++  + +A++    L+G +                      R  R
Sbjct: 279 HVKEVR------DILEIRRIKKALDKLKELKGFI----------------------RNGR 310

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            + E  QI        +S+P+ +Q I   +RS   ASEG   V+AD + IE R+ A    
Sbjct: 311 VYPEFRQIGAVTGRMSSSNPN-VQNIPRDMRSLFRASEGNLFVIADFSQIELRIAAEYVQ 369

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS- 453
           ++  L+AF  G DL+  T +        ++TK++R + K M   L Y   A+   + A  
Sbjct: 370 DENMLRAFREGRDLHRYTASLVLEKPEEEITKEERQLAKAMNFGLIYGISARGLSEYARS 429

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           + G+ L   A  V      + +   +++   ++    E+  +++   T   R
Sbjct: 430 SYGVELEIEAADVFRQKFFKFFHAFKDWHDSVKRELKEN--KEVVGTTLLGR 479



 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 597 LTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYH 649
                +Q    D+L   ++              +V  VHDEIV E P +  E     L H
Sbjct: 489 AVNYPIQGTGADLLKLAVLMFDVETRKKGLSARVVNLVHDEIVVECPQELAEQIKESLEH 548

Query: 650 LM 651
            M
Sbjct: 549 AM 550


>gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
 gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
          Length = 844

 Score =  199 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 92/557 (16%), Positives = 171/557 (30%), Gaps = 138/557 (24%)

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-SKEQELW 186
           +L+      +  E       P     + L    C         ++  + PL    +  L 
Sbjct: 394 KLVHYALHPDRGESAGRGLPPGTENPFALLETLC------EEPLWPSVAPLVRDLDLPLA 447

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +   +  RG  VD     +L+  ++    +L+  + +   G   + +  +++   LF  
Sbjct: 448 PVLARMESRGIGVDEGALASLDVRLEGRSRELEALVRAEA-GEEVNLQSPKQMAALLFER 506

Query: 247 TGLHLEDLTETTCQR---VLSSNKKLTP---QAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            GL     T+T       VL    KL     +  +        ++     +   ++  + 
Sbjct: 507 LGLPPLKKTKTGFSTDVGVLEELAKLPDPLSRVPRHLLEHREVAKLRTGFVQPFLKQAHR 566

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DG                                 +   +Q  T      + DP+   + 
Sbjct: 567 DG------------------------------GHIYSTFEQTATGTGRLSSRDPNVQNLP 596

Query: 361 -----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                ++  R C++  S   + + AD + IE RVLA + GE   ++AFE G D++  T +
Sbjct: 597 VFGEWAEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETAS 656

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             + VA  +V+ +QR   KV+   L Y   A                             
Sbjct: 657 WVYGVAAEEVSAEQRRFAKVVNFGLLYGMSAHGLA------------------------- 691

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                   + M    PE A           ++   +     RV      L +   +    
Sbjct: 692 --------QRMGVGRPEAA-----------QIIDRYFSVLPRV---REYLEETVREAKAR 729

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G  +    R                           R +G   +        L R     
Sbjct: 730 GYTVSLFGR--------------------------VRPLGEVSTVEGRGGGALDRV---- 759

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASML 647
                + +Q+ + DI    M++  +          +VL VHD +VC+ P    E  AS+L
Sbjct: 760 --AVNSPIQSTAADIAKVAMVDLERRLRGSGLPVRLVLQVHDSLVCQVPQEALEEAASLL 817

Query: 648 YHLMTSNPSWAKGLPLK 664
             +M    +    +PL+
Sbjct: 818 RDVMERAVT--LSVPLE 832


>gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
 gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
          Length = 1003

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/535 (17%), Positives = 162/535 (30%), Gaps = 145/535 (27%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT------ 206
                       +    E   +L+     E  L Y+   +   G  V  AL         
Sbjct: 555 QISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFS 614

Query: 207 --LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
              NQ  D  RT +   +++       +   +++L+T LF +  L      ++       
Sbjct: 615 ARANQAQDAARTIIGDTVQTDDGEEPLNLASVKQLQTVLFDKLALPHTRKIKSGYSTDAE 674

Query: 265 S----NKKLTPQAIQVFNNRMRASRSAVLKL----NTLVEAMNSDGRLRGTLQFLGASRT 316
           S      K++P++         A+    +KL      L +A   DGR+  T         
Sbjct: 675 SVTELLAKISPESDGAAFLGALAAYRDNIKLVQTVEGLQKAAADDGRVHTT--------- 725

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371
                                   Q         ++ P+   I         +R   I +
Sbjct: 726 ----------------------FQQGAASTGRLSSTAPNLQNIPIRTEEGRRIRGAFIVA 763

Query: 372 -------EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
                  E + L+ AD + IE R++  +A ++  + A+E GEDL+    +  F VAP +V
Sbjct: 764 PAPVDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEEV 823

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T +QR+  K M   L Y  G   F  +A    ++ +                        
Sbjct: 824 TPEQRSKVKAMSYGLAY--GLSRF-GLAKQLNISSDEA---------------------- 858

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                ++  + ++  RV      L    +Q  ++G       RR
Sbjct: 859 -------------------GELRTNYFKRFGRVGRF---LRGVLKQAHQDGYTETIFGRR 896

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            V               LP   S                     RE      L   I Q 
Sbjct: 897 RV---------------LPDLDSPNRV----------------RREAAERAALNAPI-QG 924

Query: 605 VSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMT 652
            + DI+   M+N  +          ++L VHDEI+ E    +   A  +L   M+
Sbjct: 925 TAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERVLVEEMS 979


>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 875

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/486 (15%), Positives = 155/486 (31%), Gaps = 122/486 (25%)

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              +  +  K     S  +  + ++   +   G  VD      L+     E  KL++E+ 
Sbjct: 459 QTILELKDNKAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSAEFGAEILKLEEEIF 518

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRM 281
           +L+ G   +    ++L   LF +  L    ++    +        +KL+     + N  +
Sbjct: 519 ALS-GTKFNIGSPKQLGEILFEKMQLPFGKVSAKASSYSTGAEILEKLSEHGYNIANLLL 577

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           R                               ++         P Q      R H    Q
Sbjct: 578 RW---------------------------RQLTKLKNTYTDSLPKQIDNITKRVHTTFLQ 610

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      + +P+   +       + +R   IA +G KL+ AD + IE R+L+ +A   
Sbjct: 611 TSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEKGYKLISADYSQIELRILSHIANID 670

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF   +D++  T  + FN+   ++T + R   K +   + Y   A     +A    
Sbjct: 671 ALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLN 727

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +     +  +K     + + + +    +M++                    KA+   +  
Sbjct: 728 VTNGKASEYIK-----KYFAEYKGVQEYMEQT-------------------KAFASSNGY 763

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V+  +                    ++  VPL++ KK K                     
Sbjct: 764 VTNFF-------------------GRKCFVPLIHDKKLKQF-----------------AE 787

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
           R+ +N                    +Q  + DI+   M+N        K    +VL +HD
Sbjct: 788 RAAINAP------------------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHD 829

Query: 631 EIVCET 636
           E++ E 
Sbjct: 830 ELLFEA 835


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 112/594 (18%), Positives = 192/594 (32%), Gaps = 89/594 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLK 58
           +  L +D ET         G+  Y +D  + L  F    +P E W        V      
Sbjct: 35  LRILGLDTET--------TGLNIYQDDFGIRLIQF---GNPWESWVLPVERGGVFVGAAA 83

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
            AL+      V HN+ F+  V++    + +    W         + L  P A K  G   
Sbjct: 84  TALQKVQ-RFVIHNAAFDLQVIERTLGVPME-QMWPKVEDTKIYSHLVDPRAYKEGGTGH 141

Query: 117 KLSS--------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           KL             EE K  +AR  K             +  +    +  Y   D  + 
Sbjct: 142 KLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 169 REIFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +  ++ PL  +        E +L  +   +   G+ +DV  +  L++   + + +   
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSE-DMLRKAEHYT 258

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            +    YG V S    EKL   L   TG+ ++  T T  ++V +   +   +        
Sbjct: 259 AVARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATNKRQVNAELLEALAEEGNALAKA 316

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++       T          +R  ++   A                    R H  ++
Sbjct: 317 AIEAKKWGSWEKTW---------VRNFIERRDA------------------NDRVHPGIN 349

Query: 341 QIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +        TS+P    + S    VR C +A  G+ +   D    E RVLA ++G+Q  
Sbjct: 350 PLQARTGRMSTSNPSAQNLPSGDWMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTM 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AFE   DL+  T                R IGK+    + Y GGA    K+A+  G+ 
Sbjct: 410 LRAFEEESDLHQVTA---------DAAGVDRKIGKMANFLVCYGGGAG---KLATNAGIT 457

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 ++      E +         + +   + A    FI T   R          R  
Sbjct: 458 FPEAKKVL------EVFATTYPGVDTLNKRMQQEAGSAGFITTPTGR---RLPVDPDRAY 508

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              N L Q+  + +     +   +    P + +      L L LP   +     
Sbjct: 509 SALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVL-LSLPEADAEAAVK 561



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 22/100 (22%)

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +  P+GR L   D     S LN                   ++Q+ SRD+    ++   
Sbjct: 491 FITTPTGRRL-PVDPDRAYSALNY------------------LIQSSSRDVTGAAVLRLH 531

Query: 619 KAGY--DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNP 655
           +AG+  ++ L VHDE++   P+ D E     +  +M    
Sbjct: 532 EAGFTPNMRLVVHDEVLLSLPEADAEAAVKEVGQIMEQRI 571


>gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 842

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/516 (15%), Positives = 162/516 (31%), Gaps = 130/516 (25%)

Query: 170 EIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            I ++L     +E          + L  +   +   G  +++     L+   +     L+
Sbjct: 428 AIHEKLTQRLFQEKLFTIYERFDRPLMKVIFDMEQNGILLNIQKLQELSDKFEQLIAVLE 487

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-RVLSSNKKLTPQAIQVFN 278
            ++ +L  G   +    ++L   LF +  L  +  +++          + L  + +++ +
Sbjct: 488 NDIHNLA-GEKFNIASPKQLSDVLFNKMELSKKKKSKSGSYSTNYEVLEALEEEGVEIAS 546

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                                        L +   S+           Q  P   R H  
Sbjct: 547 K---------------------------ILNWRHLSKLKGTYTDALIKQVDPIDGRIHTS 579

Query: 339 LDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +T      +S+P+   I         +R   IA +G K++ AD + IE ++LA +A
Sbjct: 580 FSTTVTATGRLSSSNPNLQNIPIRSEEGNFIRQAFIAPKGCKIISADYSQIELKLLAHVA 639

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +AF   +D++  T  + F V   ++ +  R   K +   + Y         +A 
Sbjct: 640 NVTAFKEAFANRQDIHDITARQVFGV--QEIDEQLRRKAKTINFGIIYGISPF---GLAK 694

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+                 +++A  +  +    +PE       I    E+     R  
Sbjct: 695 RLGIT----------------FQEAAEYINYYFSCYPE-------IKVYMEKAVSIARN- 730

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           H  V  L+                                           GR    RD+
Sbjct: 731 HGYVETLF-------------------------------------------GRRCFVRDI 747

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--TKAGYDIVLTVHDE 631
            N   YL        R++          +Q  + DI+   M+          I+L VHDE
Sbjct: 748 NNKIPYL--------RQFAERA-AINAPLQGTAADIIKRAMIRLFDQLKSGKIILQVHDE 798

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           ++ E  ++  +  A ++  +M +       +PL+ E
Sbjct: 799 LLVEVEESRVQETAKLMKDIMENAVE--ISIPLEVE 832


>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
 gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
 gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
          Length = 875

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 135/415 (32%), Gaps = 48/415 (11%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           ++   +   G  VD      L+     E  KL++E+ +L+ G   +    ++L   LF +
Sbjct: 482 FILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALS-GTKFNIGSPKQLGEILFEK 540

Query: 247 TGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
             L     +    +        +KL+     + +  +R                      
Sbjct: 541 MQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW--------------------- 579

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
                    ++         P Q      R H    Q  T      + +P+   +     
Sbjct: 580 ------RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSS 633

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
             + +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+
Sbjct: 634 EGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNL 693

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              ++T + R   K +   + Y   A     +A    +     +  +K      ++    
Sbjct: 694 QKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVTNGEASEYIK------KYFAEY 744

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   E     A  + ++     R K      H +  +L     +A       G    
Sbjct: 745 KGVQEYMEQTKAFASSNGYVTNCFGR-KCFVPLIHDK--KLKQFAERAAINAPIQGTNTD 801

Query: 540 ARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             K   + L   ++K K    L+L     L++    +    +    +++    T 
Sbjct: 802 IIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENSTN 856


>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
 gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
 gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
          Length = 875

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 135/415 (32%), Gaps = 48/415 (11%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           ++   +   G  VD      L+     E  KL++E+ +L+ G   +    ++L   LF +
Sbjct: 482 FILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALS-GTKFNIGSPKQLGEILFEK 540

Query: 247 TGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
             L     +    +        +KL+     + +  +R                      
Sbjct: 541 MQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW--------------------- 579

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
                    ++         P Q      R H    Q  T      + +P+   +     
Sbjct: 580 ------RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSS 633

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
             + +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+
Sbjct: 634 EGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNL 693

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              ++T + R   K +   + Y   A     +A    +     +  +K      ++    
Sbjct: 694 QKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVTNGEASEYIK------KYFAEY 744

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   E     A  + ++     R K      H +  +L     +A       G    
Sbjct: 745 KGVQEYMEQTKAFASSNGYVTNCFGR-KCFVPLIHDK--KLKQFAERAAINAPIQGTNAD 801

Query: 540 ARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             K   + L   ++K K    L+L     L++    +    +    +++    T 
Sbjct: 802 IIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENSTN 856


>gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 836

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 95/506 (18%), Positives = 163/506 (32%), Gaps = 131/506 (25%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           ++  +  L  +   +   G  +DV     L + ++     L++ +     G   + +  +
Sbjct: 435 VTRVDHPLSAVLVDMEREGIGLDVEGLRGLRERLERALGALEEGIAREA-GAQVNLQSPK 493

Query: 238 KLKTWLFLETGLHLEDLTETTCQRV------LSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++   LF   GL     T+T           LS   +   +   +       S+     +
Sbjct: 494 QVAWLLFERLGLPPVKRTKTGLSTDVGVLEELSRLPEPLGRVPSMILEHREISKLITAFV 553

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           N  +E   S G +R T                                DQ  T      +
Sbjct: 554 NPFLEQ-GSSGVIRSTF-------------------------------DQTGTGTGRLSS 581

Query: 352 SDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            DP+   +      +   R C++   EG   V AD + IE RVLA ++GE+  ++AFE G
Sbjct: 582 RDPNVQNLPQFGHWAVEFRRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEG 641

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T +  + V P  V+ +QR   KV+   L Y  G                     
Sbjct: 642 ADVHARTASWIYGVDPQAVSPEQRRFAKVVNFGLLYGMG--------------------- 680

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                       A    + M  +  E A       +A   V++  R+           + 
Sbjct: 681 ------------AHGLAQRMGVSRSEAAEVMERYFSALPGVREFTRRM----------VE 718

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           QA  +       ++ R R    +  ++            GR     D    R  +NT   
Sbjct: 719 QA--KARGYAATLMGRVRPLSEVSTVE------------GRGAGAID----RVAINTP-- 758

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDE 641
                           +Q  + DI  + M+   +A       +VL VHD IVC  P+   
Sbjct: 759 ----------------IQGSAADIARKAMVELHRALAGGDCRMVLQVHDSIVCSVPEGMA 802

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAE 666
              + L   +M    S    +PL  E
Sbjct: 803 SRVAELMREVMEGAAS--LSVPLVVE 826


>gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
 gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
          Length = 982

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 148/480 (30%), Gaps = 105/480 (21%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  + ++   +  +G  VD+    ++      +  +  +       G   + +  +
Sbjct: 572 LQRMELPVSHVLYGMESQGAKVDMQRLTSMRDTFAADARQAQEIAWDYA-GTTVNLQSPK 630

Query: 238 KLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           +L   LF + GL     T+T        + +KL                       T  +
Sbjct: 631 QLGKVLFEDMGLKPTKRTKTGGYTTNADALQKL---------------------YFTYAD 669

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
              + G L   L+    ++  +    +    N P   R H   +Q +       + DP+ 
Sbjct: 670 DERASGFLGALLRHRETNKLKQIVATLIDATN-PADERIHTTFEQTVAATGRLSSVDPNL 728

Query: 357 LQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             I         +RS  +  EG + L+  D + +E R++A ++G++  ++AF++G D + 
Sbjct: 729 QNIPNRNAAGREIRSAFVPGEGFESLMSCDYSQVELRIMAHLSGDESLIEAFKSGADFHK 788

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              +    V   Q+T DQR+  K M   L Y   +     +A    +  +          
Sbjct: 789 YVASLVHGVPVDQITPDQRSHVKAMSYGLAYGLSSY---GLAQQLKIRPSEA-------- 837

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            E +K  +     +V +    L     +
Sbjct: 838 ---------------------------------EALKAKYFATFGKVHDF---LESCVSE 861

Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
             + G    +  +RR  P +   K  N          +L     G+    +     +  R
Sbjct: 862 ARKRGYTETMFGRRRYFPAL---KSTNRAARDAAERAALNAPIQGSAADIMKIAMIRARR 918

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                G                  M +       I+L +HDE+V E    +    S L  
Sbjct: 919 ALAEAG------------------MKS------RIILQIHDELVVEIAPGEREQVSALVR 954


>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
 gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
          Length = 949

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/553 (16%), Positives = 161/553 (29%), Gaps = 166/553 (30%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               +    L  L+  E  L ++   +   G  VDV     L +    +R ++       
Sbjct: 497 DTELDRIDSLPLLTEMELPLAFVLADLEAAGIAVDVDHFGEL-EKNFAQRIRVAANAAYD 555

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             G   +    ++L+T LF +  +     T+T       + + L  +    F   +   R
Sbjct: 556 VIGEQINLGSPKQLQTVLFDKLDMPKTKKTKTGYTTDADALQALYEKTEHPFLAHLLEHR 615

Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            A    + ++ L++++  DGR+  T                                +Q 
Sbjct: 616 DATRLKVTVDGLLKSVADDGRIHTT-------------------------------FNQT 644

Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIA--------------------------- 370
           I       +++P+   I         +R   I                            
Sbjct: 645 IAATGRLSSTEPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAG 704

Query: 371 -----------SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
                           L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F V
Sbjct: 705 SGSSGHDGGTGDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGV 764

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT + R   K M   L Y   A     +A+   ++ +                   
Sbjct: 765 PIDEVTTEMRHRVKAMSYGLAYGLSAF---GLAAQLKISRDEA----------------- 804

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                      K+      +R   + + LH    +   N     
Sbjct: 805 ---------------------------KEQMDAYFARFGGVRDYLHDVVAEARRNEYTAT 837

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              RR                 LP                LN+   Q  R+      L  
Sbjct: 838 LFGRRRY---------------LP---------------DLNSDNWQ-RRQSAERMALNA 866

Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652
            I Q  + DI+   M+N  K          ++L VHDE+V E    +      +    M 
Sbjct: 867 PI-QGTAADIIKVAMINVHKRLQSEELRSRMLLQVHDELVVEVATGERDAVEAVVREEMG 925

Query: 653 SNPSWAKGLPLKA 665
           +  +    +PL+ 
Sbjct: 926 AAIT--LSVPLEV 936


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 106/527 (20%), Positives = 182/527 (34%), Gaps = 103/527 (19%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+   G+     D  + L           + D      +   L+EALE      V HN+ 
Sbjct: 33  DIEATGLSP--LDARMRLLQLAAGGETF-VVDVFEVKDL-SPLREALE-GGPLKVLHNAK 87

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSN------GLPSALKAV-GEALKLSSQKMEEGK 127
           ++ + L A   + +     +   +LA         G   +L+AV G  L+ +  K    +
Sbjct: 88  YDYSFLLAQHGIRLSP---LFDTMLAAQLLDGGEQGPSYSLEAVAGRYLQETVDKTARRE 144

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE---------PL 178
           +      + +                     EY   D  +   + +RL+         P+
Sbjct: 145 DWSKELSREQ--------------------LEYAARDAAILLPLHERLQELLEREGLGPV 184

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES-----------LTY 227
           S  E         +   G  +DV     L ++V   R +  + LES              
Sbjct: 185 SRIEFGAVPAIAEMELAGIRLDVRRWRELERVVRRRRDEAARRLESHFPQPEGVLPLEGL 244

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +    +++    F   G+ L D       R+ +      P A  +   R       
Sbjct: 245 GPRLNLNSPQQIME-AFRSIGIELPD------TRMWTLLTVDHPAARDLLEYRELQ---- 293

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             KL T +E    +G +                         P+  R H    Q      
Sbjct: 294 -KKLGTYLETY--EGFVH------------------------PKTGRIHASFLQCRVPTG 326

Query: 348 TSITSDPDPLQIIS-DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
               ++P+  QI   D  R C +A EG  LV+AD + IE R+LA ++G+   ++AF  GE
Sbjct: 327 RLACTNPNVQQIPHEDEFRRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFVEAFRRGE 386

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           DL+  T A  F V   +VTK+QR+  K +   L Y  G    + +A+  G +      L+
Sbjct: 387 DLHRVTAATMFGVPKEEVTKEQRSAAKRINFGLAYGRGP---RSLAAQLGTDEERARRLI 443

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                  E+       +         A+++  + T   R++K  R +
Sbjct: 444 D------EYFATYGRVQRYLNETANRALKEGALRTLSGRLRKFGRTR 484


>gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage]
          Length = 234

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 96/235 (40%), Positives = 140/235 (59%), Gaps = 8/235 (3%)

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           D+  +T QR + ++  +     ++ + R+++  ++  K   L++++++DGRLRGT QF G
Sbjct: 1   DMQASTLQRRV-NDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCG 59

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQIISDCVRSCVIA 370
           ASRTGRW+G +F P NLPRP+   + +D+ +  L          D +Q+ S  +R C+IA
Sbjct: 60  ASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIA 119

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTYARSFNVAPAQVT 425
             GKKLV++DL+ IE R+LAW+AGE WK+ AF       G+DLY   YAR+F + P  VT
Sbjct: 120 PXGKKLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVT 179

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           K QR IGKVMEL LGY GG  AF   A   GL+L+  A     N       +A +
Sbjct: 180 KAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAALPNIPHNVKREAIS 234


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 112/663 (16%), Positives = 208/663 (31%), Gaps = 109/663 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL---------KEALENT 64
           +D    G+  Y +   ++  +F        ++  V   V  Q L         K  L + 
Sbjct: 142 VDTETTGLDVYND--VIVGLSFTLPKADYHVYIPVAHKVAGQQLSRRAVLTALKPILTDV 199

Query: 65  DVTIVAHNSYFERTVL-KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           ++  + HNS ++  +L +    L    H  +  + +   N    ALK +           
Sbjct: 200 NIGKILHNSKYDIHMLIRHGLRLRGIKHDTMIAMAVLNENEPTLALKNLATKYG------ 253

Query: 124 EEGKELIARFC---KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE---- 176
                    F    K  T+E L+ +              Y   D  +T E++K       
Sbjct: 254 -------KYFGFEDKSYTYEELFGKTS-FAEIPLDAALVYAAKDTHLTYELYKWQRQHLN 305

Query: 177 -----PLSSKEQELWYLDQ--TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                 L   E E   +D    +   G+ +D+  A      +  E   L+  L      +
Sbjct: 306 QKESLRLIYDELENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEIAGLEANLTEHFGDI 365

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +     +L   L+ +  L +           + + KKL  +      + +   R    
Sbjct: 366 NFN--SPLQLAAVLYDKLKLPVIKG--KERSTDVKTLKKLRDETKHEGIDVLLKYRELTK 421

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            L T VEA+                           PQ + +    H   +Q+ T     
Sbjct: 422 LLGTYVEAL---------------------------PQLIKKDGLLHGSFNQVATVTGRF 454

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            + +P+   +     R  ++A E   ++  D + IE RVLA M+G+    + +  G+DLY
Sbjct: 455 ASREPNLQNLPPRARR-LIVAPEDSLILGVDFSQIEPRVLAHMSGDPHLQEPYLKGQDLY 513

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  +R F V+  +   D     K+M++ L       +   +A   G+ +      ++  
Sbjct: 514 STLASRVFKVSYEE-CGDDSKYRKMMKVGLLAVMYGTSMWTLADQLGITVEEANQFIEDF 572

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
            A   + D   F     E   ++   +   G      K+ +               +A  
Sbjct: 573 FA--TYPDVYAFICATHEFAKQNEYVETLYGR-----KRRFPGHR----------EKAIV 615

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                 +       + VP  Y +  K      LP      +R V            ++ R
Sbjct: 616 YDKLATEICEILGTKAVPYDYWQYKK-----ELPVILRRQFRAVKGE-------VERVRR 663

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLY 648
                       +Q  + DI+   ++N    G  I+ TVHDE +              + 
Sbjct: 664 M------AVNARIQGTAADIMKRALINLYNDGRKIIGTVHDEALLIVNKNITLAEVEKIE 717

Query: 649 HLM 651
             M
Sbjct: 718 ACM 720


>gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
 gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
          Length = 1042

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 148/446 (33%), Gaps = 49/446 (10%)

Query: 160  YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
             C  D    R +     P+ +           E  +  +   +   G  VD +    + +
Sbjct: 604  DCALDCAYLRALHDLFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGVDQSRLEQMRE 663

Query: 210  IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
                +  +  Q       G   + +  ++L+  LF + GL     T++  +   ++    
Sbjct: 664  SFSAQAEQAQQIAWQEA-GKEINLQSPKQLQAVLFDDMGLTPTKKTKSGGRTTNAA---- 718

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
               A+Q    R   +  A   L  L+       R    L+ +  +               
Sbjct: 719  ---ALQELYMRSIHNERANAFLGALLR-----HREVNKLKQIVQTLIDAIDVRD------ 764

Query: 330  PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAG 383
               SR H   +Q +       ++DP+   I         +R   +AS+G + L+ +D + 
Sbjct: 765  ---SRIHTTFEQTVAATGRLSSTDPNLQNIPNRNVEGREIRGAFVASDGFESLLSSDYSQ 821

Query: 384  IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            +E R++A ++G++  ++AF +G D +    +  + +   Q++ DQR+  K M   L Y  
Sbjct: 822  VELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPIDQISSDQRSHIKAMSYGLAYGL 881

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                   +A   G++          +    ++           E+    A +  +  T  
Sbjct: 882  STY---GLAQQLGISPAEA------DILRAKYFSTFGKVHDYLESLVAQAKKRGYTETMF 932

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILML 562
             R ++ +    S   +L +   +A       G A    K          KD      ++L
Sbjct: 933  GR-RRYFPDLRSSRRQLRDAAERAALNAPIQGSAADIMKIAMKKAYQDLKDAGVKSRIIL 991

Query: 563  PSGRSLVYRDVGNNRSYLNTTTRQLT 588
                 LV       +  +    ++  
Sbjct: 992  QIHDELVVELAPGEQEQVTAMVKEAM 1017


>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
 gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
          Length = 875

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 80/547 (14%), Positives = 168/547 (30%), Gaps = 73/547 (13%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I                  L+ +  
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIED-------------LELMQY 418

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL     +    KE++           +         +    F    K       +  K 
Sbjct: 419 ALSAGLSQKNLFKEVLKE---PWIENIII-----ESAKIVINFIALYKQ-TIWELKDNKT 469

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
               S+ +  + ++   +   G  VD      L+     E  KL++E+ +L+ G   +  
Sbjct: 470 FRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALS-GTKFNIG 528

Query: 235 CLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
             ++L   LF +  L     +    +        +KL+     + +  +R          
Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW--------- 579

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
                                ++         P Q      + H    Q  T      + 
Sbjct: 580 ------------------RQLTKLKNTYTDSLPKQIDNITHKVHTTFLQTSTTTGRLSSQ 621

Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   +       + +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D
Sbjct: 622 EPNLQNVPIRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDD 681

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T  + FN+   ++T + R   K +   + Y   A     +A    +     +  +K
Sbjct: 682 IHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVTNGEASEYIK 738

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                 ++       +   E     A  + ++     R K      H +  +L     +A
Sbjct: 739 ------KYFAEYKGVQKYMEQTKAFASSNGYVTNCFGR-KCFVPLIHDK--KLKQFAERA 789

Query: 528 FEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                  G      K   + L   ++K K    L+L     L++    +    +    ++
Sbjct: 790 AINAPIQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKK 849

Query: 587 LTREYTY 593
           +    T 
Sbjct: 850 IMENSTN 856


>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
 gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
 gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
          Length = 875

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 135/415 (32%), Gaps = 48/415 (11%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           ++   +   G  VD      L+     E  KL++E+ +L+ G   +    ++L   LF +
Sbjct: 482 FILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALS-GTKFNIGSPKQLGEILFEK 540

Query: 247 TGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
             L     +    +        +KL+     + +  +R                      
Sbjct: 541 MQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW--------------------- 579

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360
                    ++         P Q      R H    Q  T      + +P+   +     
Sbjct: 580 ------RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSS 633

Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
             + +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  T  + FN+
Sbjct: 634 EGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNL 693

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              ++T + R   K +   + Y   A     +A    +     +  +K      ++    
Sbjct: 694 QKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVTHGEASAYIK------KYFAEY 744

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
              +   E     A  + ++     R K      H +  +L     +A       G    
Sbjct: 745 KGVQEYMEQTKAFASSNGYVTNCFGR-KCFVPLIHDK--KLKQFAERAAINAPIQGTNAD 801

Query: 540 ARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             K   + L   ++K K    L+L     L++    +    +    +++    T 
Sbjct: 802 IIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENSTN 856


>gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
 gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
          Length = 861

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 143/396 (36%), Gaps = 47/396 (11%)

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
           +E+E   +   +  +G  ++       N  ++ +   ++ ++  +  G   +    ++L 
Sbjct: 466 EEKEFTDVLIYMEKQGIAINQNYFEKYNLELEKKIKDIENKIY-IESGESFNISSPKQLG 524

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             LF   G+      +          + L  + I++    +                   
Sbjct: 525 EVLFETMGIEGVKKNKRGYSTDAEVLELLRDRGIKIAELLL------------------- 565

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                   ++    +         P   L    R H   +Q  T      +S+P+   I 
Sbjct: 566 --------EYRELVKLKSTYVE--PLLKLSINGRIHTTYNQTGTATGRLSSSNPNLQNIP 615

Query: 361 SD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
           +       +R   IAS+G KLV  D + IE RVLA ++ ++  + A++   DL+  T  +
Sbjct: 616 TRTYEGTKIREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARK 675

Query: 416 SFN-VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
            F      +V+K QR I KV+  ++ Y         ++    + ++     + T      
Sbjct: 676 IFMLKDDEKVSKTQRNIAKVINFSVLYGKTPF---GLSKELKITVSDAKLYINT------ 726

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           +       R + ++  E A +D ++ T     ++     +S    +  +  +    T+  
Sbjct: 727 YFKEYPKVRILLDDIIEKAKKDGYVETKFG-TRRYVYDINSSNINIKEQAKRMAVNTVIQ 785

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           G A    K+  +  +Y K   +N+ ++L     L++
Sbjct: 786 GTAANIIKKV-MKEIYDKLCNDNVKMLLQVHDELIF 820



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 79/248 (31%), Gaps = 29/248 (11%)

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
           G K  +   ++ G+ L +F +         E    EN     + N   H +         
Sbjct: 621 GTKIREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINAYKHNLDLHELTAR------ 674

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR-KRRDVPLVYMKKDKNNLILML 562
              K    +   +VS+    + +    ++  GK      K   + +   K   N      
Sbjct: 675 ---KIFMLKDDEKVSKTQRNIAKVINFSVLYGKTPFGLSKELKITVSDAKLYINTYFKEY 731

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY-----------GGK--LTENIVQAVSRDI 609
           P  R L+   +   +      T+  TR Y Y             K      ++Q  + +I
Sbjct: 732 PKVRILLDDIIEKAKKDGYVETKFGTRRYVYDINSSNINIKEQAKRMAVNTVIQGTAANI 791

Query: 610 LAEGMMNATKAGY----DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           + + M             ++L VHDE++ E  +        +  +M +   +   + LK 
Sbjct: 792 IKKVMKEIYDKLCNDNVKMLLQVHDELIFEVREDINI-FEEIRDIMQNTIVF-DDVVLKV 849

Query: 666 EGYESKRY 673
            G E   +
Sbjct: 850 NGSEGDNW 857


>gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17]
 gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17]
          Length = 943

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 85/508 (16%), Positives = 159/508 (31%), Gaps = 118/508 (23%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++   L S E  + ++   +   G  VD      +     V+     +       G   
Sbjct: 527 REQFRLLQSIELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFA-GSRV 585

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           + +  ++L+  LF + GL     T++       S+ + L      V N R          
Sbjct: 586 NLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLA--VRSVGNER---------- 633

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                    ++G L   L+    ++  +    +      P   R H   +Q +       
Sbjct: 634 ---------ANGFLTALLRHRETNKLKQIVQSLIDA-VNPDDGRIHTTFEQTVAATGRLS 683

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404
           + DP+   I         +RS  +  EG + L+ +D + +E R++A ++G+   ++AF +
Sbjct: 684 SVDPNLQNIPNRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRS 743

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D +    +  + +    +T DQR   K M   L Y              GL+    A 
Sbjct: 744 GADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY--------------GLSTYGLAQ 789

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            +K +                                  +R+K  +     +V E    L
Sbjct: 790 QLKISPG------------------------------EADRLKSQYFATFGKVHEYLESL 819

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                +  +     +  +RR  P +                                   
Sbjct: 820 VADARE--KGYTETMFGRRRYFPGLQSPNRN----------------------------- 848

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPD 638
               R+    G L   I Q  + DI+   M++A+ A         I+L +HDE+V E   
Sbjct: 849 ---IRDAAERGALNAPI-QGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAP 904

Query: 639 TDEFNASMLYH-LMTSNPSWAKGLPLKA 665
            +    + L    M      A  +PL  
Sbjct: 905 GEAEQVTGLVRDAMEHAVDLA--VPLDV 930


>gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake]
 gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake]
          Length = 861

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 74/431 (17%), Positives = 142/431 (32%), Gaps = 67/431 (15%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G  V+V +  TL+     +   L+ E+  L+ G   +    ++L  
Sbjct: 461 EKPLIRVLDNMEKIGVLVNVDVLKTLSATFSEKINMLESEIYKLS-GAEFNIASSKQLGN 519

Query: 242 WLFLETGLHLEDLTET----TCQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            LF + G+       +    T   VLS         A ++   R                
Sbjct: 520 ILFDKMGIKKGKKLSSGNYSTDAEVLSDLAFNDVEIADKILKWR---------------- 563

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                            ++       V   Q      R H     + T      +S+P+ 
Sbjct: 564 ---------------HLTKLKTTYTDVLEKQKNSNSGRVHTFYSMVSTATGRLSSSNPNL 608

Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
             I       + +R   IA +G KL+ AD + IE R++A +A  Q    AF   +D++  
Sbjct: 609 QNIPVRSEEGNSIRRAFIAKKGYKLISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSI 668

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  + FN    ++ K+ R   K +   + Y   A     +A    ++ +  +  +  N+ 
Sbjct: 669 TAKQIFNT--EKLDKNLRRRAKSINFGIIYGMSAF---GLAKQLSISRSEASTYI--NNY 721

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              + + +++   ++     H       G  C       +  +S      N   +A    
Sbjct: 722 FRSYPEIQSYMENIKAYAKTHGYTRTIFGRKC-----FVKDINSDNVTARNFSERAAINA 776

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G +    K   + L    K+ +   L+L     L++  +           R+     
Sbjct: 777 PLQGTSADIIKMSMIHLFDKLKNGS---LILQVHDELLFEILEEQVDDAVKIIRE----- 828

Query: 592 TYGGKLTENIV 602
                + ENIV
Sbjct: 829 -----VMENIV 834


>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
 gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
          Length = 875

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/501 (15%), Positives = 159/501 (31%), Gaps = 123/501 (24%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  +  K     S+ +  + ++   +   G  VD      L+     E  +L++E+ +L
Sbjct: 461 ILELKDNKAFRLYSNIDLPICFILDKMEKVGIKVDANYLKQLSAEFGTEIARLEEEIFAL 520

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRMRA 283
           + G   +    ++L   LF +  L     +  T      +   KKL+     + +  +R 
Sbjct: 521 S-GTKFNIGAPKQLGEILFEKMQLPFGKASAKTNSYSTGVEILKKLSKHGYNIADLLLRW 579

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                                         ++         P Q      R H    Q  
Sbjct: 580 ---------------------------RQLTKLKNTYTDSLPKQIDNITRRVHTTFLQTS 612

Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T      + +P+   +       + +R   I  +G KL+ AD + IE R+L+ +A     
Sbjct: 613 TTTGRISSQEPNLQNVPIRSSEGNKIRQAFIPEKGYKLISADYSQIELRILSHIANIDAL 672

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF   +D++  T  + FN+   ++T   R   K +   + Y              G++
Sbjct: 673 KQAFTNKDDIHTQTACQIFNLPKDKLTSKHRRKAKAINFGIIY--------------GIS 718

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A  +   +      +A  + +          +++    T      KA+   +  V+
Sbjct: 719 AFGLAQQLNVTN-----SEAAEYIKKY--FAEYKGVQEYIEQT------KAFVSSNGYVT 765

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             +                    ++  +P ++ KK K                     R+
Sbjct: 766 NFF-------------------GRKCFLPSIHNKKLKQF-----------------AERA 789

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
            +N                    +Q  + DI+   M+N        K    +VL +HDE+
Sbjct: 790 AINAP------------------IQGTNADIIKIAMINLDQEIEKLKLKTRLVLQIHDEL 831

Query: 633 VCETPDTD-EFNASMLYHLMT 652
           + E P  + E    ++  +M 
Sbjct: 832 LFEAPTDEIELVIPIIKKIME 852


>gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7]
 gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11]
          Length = 267

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 118/267 (44%), Gaps = 45/267 (16%)

Query: 454 TTGLNLNTFAHLVKTNSAPEEW------------EDAENFCRWMQENHPEHAIEDLFIGT 501
             GL+L   A  +        W            ++A+   R  +++     I D  +  
Sbjct: 1   NLGLDLIEXAKTMAGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWR 60

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENG---------------KAIIARKRRDV 546
            C+ +K+ WR+ H +    W +L       + N                +AI   +  ++
Sbjct: 61  TCDAIKRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANIRSNGERAIRIWRTTEI 120

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS------------------YLNTTTRQLT 588
                      L + LPSGR L Y  +G + +                    N  TRQ T
Sbjct: 121 DSSGRNIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTNVRIKYQGENQLTRQWT 180

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
             YT+GGK  ENIVQA  RD+LA  M+NA   GY IVL+VHDE+VCETPDT ++  + L 
Sbjct: 181 TLYTHGGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDELVCETPDTPDYTVAELE 240

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYRK 675
            LM + P WA+G PL AEG E KRY K
Sbjct: 241 KLMCALPEWAEGFPLVAEGAELKRYAK 267


>gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201]
 gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201]
          Length = 960

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 152/449 (33%), Gaps = 56/449 (12%)

Query: 155 RLFGEYCKGDVTVTREIFK---RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
              G  C+      R + +   +L  L+  E  L  +   +   G  +D      L + +
Sbjct: 522 ATLGRACRELSEHLRALLEADGQLGLLTELEMPLAVILARMEATGIAMDRPGIDVLFEDL 581

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
                +  ++ ++       +    ++L+  +F E GL     T+T      S+   L  
Sbjct: 582 QHPIDQAFEQAQAQID-HEVNLGSTKQLQAVMFDELGLPKTKKTKTGYTTDASAVADLIG 640

Query: 272 QA---------IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           +          +    N    S+   + +  L +A+  DGR+  T Q   A+ TGR S  
Sbjct: 641 KVSPDTAGSRFLVALMNWREYSKLKQI-VAGLRDAIAEDGRIHTTYQQTVAA-TGRLSST 698

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-----LV 377
               QN+P  +                              +R   +  E  +     L+
Sbjct: 699 GPNLQNIPVRTEQ-------------------------GQRIRDVFVVGEDTQGPFECLM 733

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  ++AF  GEDL+    +R F+VAP  VT   R+  K M  
Sbjct: 734 TADYSQIEMRIMAHLSGDEGLIEAFRGGEDLHRFVGSRVFDVAPEDVTPQMRSKVKAMSY 793

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            L Y   +    +      + ++    ++  +   E +    +F R + E        + 
Sbjct: 794 GLVYGLSSYGLSQ---QLHIGVDEARTMM--SGYFERFGGVRDFLRGVVEEARSKGYTET 848

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
             G      ++      S   +      +        G A    K+  + +    +D   
Sbjct: 849 IDGR-----RRYLPDLTSDNRQARQAAERMALNAPIQGSAADIIKKAMIGVDRALRDGQL 903

Query: 558 L-ILMLPSGRSLVYRDVGNNRSYLNTTTR 585
              ++L     L+       R  +    R
Sbjct: 904 RSRVLLQVHDELIVEVAPGEREEVERILR 932


>gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20]
          Length = 893

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 102/649 (15%), Positives = 199/649 (30%), Gaps = 163/649 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112
           L+EAL +        N++F+          D+     + + + A+      +L+ +    
Sbjct: 371 LEEALFSPFSLEFLQNAFFKMLQHVQIIGHDLKP---LLSFLKAKYQ---VSLENIRIQD 424

Query: 113 GEALKLSSQKMEEG-KELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            + L       + G  E++  + K E   HE + D    N  E            + +  
Sbjct: 425 TQILAFLKNPEKVGFDEVLKEYLKEELIPHETIKDFKTKNKVEKLEQ--------LDMEL 476

Query: 170 EIFKRLEPLSSK--------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              KRL     K              E  L  +   +  +G+ +D      L Q    E 
Sbjct: 477 NALKRLCEYFEKGGLEEGLLALARGVETPLMKVLMGMEFQGFKIDAPYFKRLEQEFKNEL 536

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             L++++  L  G+  +    ++L   L+ +  L       T  + +L    K  P    
Sbjct: 537 HVLERQILDLI-GVDFNLNSPKQLSEILYEKLELPQNKSRSTDEKSLLKILDK-HPSIAL 594

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++        L+   + D ++  T                            
Sbjct: 595 ILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFI-------------------------- 627

Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVL 389
                Q  T      +  P+   I         +R   IAS +   L+  D + IE R+L
Sbjct: 628 -----QTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 682

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A  + ++  + AF  G D+++ T    F      + K++R+I K +   L Y  G+   +
Sbjct: 683 AHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGS---K 736

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           K++ T  + LN                                              K  
Sbjct: 737 KLSETLNIPLNEA--------------------------------------------KSY 752

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                 R   + + L++  E+ ++  KA     R  V       D               
Sbjct: 753 IEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDH-------------- 798

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDI 624
              +  N                        I Q  + D+L  GM+  ++         +
Sbjct: 799 ---IKGNYLREG----------------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRL 839

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE++ E  + +          + ++  +   +PL+   + +KR+
Sbjct: 840 LLQVHDELIFEIEEKNALKLQQEIQRILNDEVYPLKVPLETSAFVAKRW 888


>gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel]
 gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel]
          Length = 860

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 83/495 (16%), Positives = 163/495 (32%), Gaps = 122/495 (24%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G  +D ++   L+     + + L++++  L+ G   +     +L T
Sbjct: 465 EKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLS-GEEFNIASSRQLST 523

Query: 242 WLFLETGLHL-EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            LF + G+   + L+  T         +L    +++ +  ++                  
Sbjct: 524 ILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKW----------------- 566

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                        ++       V   Q     SR H       T      +S+P+   I 
Sbjct: 567 ----------RHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIP 616

Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                 + +R+  IA  G KL+ AD + IE R++A +A  Q    AF   +D+++ T  +
Sbjct: 617 IRSEEGNAIRNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQ 676

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            FN     + K  R   K +   + Y         +A   G+  +               
Sbjct: 677 IFNT--QNIDKKLRRKAKSINFGIIYGISPF---GLAKQLGITRSE-------------- 717

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
             A        +++PE       I +  E +K   R                + +T+   
Sbjct: 718 --ASKHIENYFKSYPE-------IKSYIEDIKVYART-------------HGYTRTV--- 752

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                 ++  +  +    + NN  L   S R+                            
Sbjct: 753 ----FGRKCFIKDI----NSNNHALRNFSERA---------------------------- 776

Query: 596 KLTENIVQAVSRDILAEGMMNA---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651
                 +Q  S DI+   M++     K GY ++L VHDE++ E P+   +    ++  +M
Sbjct: 777 -AVNAPLQGTSADIIKMSMIHLFDRLKTGY-MILQVHDELLFEVPEDHVDNTVKLIKEVM 834

Query: 652 TSNPSWAKGLPLKAE 666
                    +PLK +
Sbjct: 835 EGIVK--LSVPLKVD 847


>gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden]
          Length = 865

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 83/495 (16%), Positives = 163/495 (32%), Gaps = 122/495 (24%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +   +   G  +D ++   L+     + + L++++  L+ G   +     +L T
Sbjct: 470 EKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLS-GEEFNIASSRQLST 528

Query: 242 WLFLETGLHL-EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            LF + G+   + L+  T         +L    +++ +  ++                  
Sbjct: 529 ILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKW----------------- 571

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                        ++       V   Q     SR H       T      +S+P+   I 
Sbjct: 572 ----------RHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIP 621

Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                 + +R+  IA  G KL+ AD + IE R++A +A  Q    AF   +D+++ T  +
Sbjct: 622 IRSEEGNAIRNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQ 681

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            FN     + K  R   K +   + Y         +A   G+  +               
Sbjct: 682 IFNT--QNIDKKLRRKAKSINFGIIYGISPF---GLAKQLGITRSE-------------- 722

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
             A        +++PE       I +  E +K   R                + +T+   
Sbjct: 723 --ASKHIENYFKSYPE-------IKSYIEDIKVYART-------------HGYTRTV--- 757

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                 ++  +  +    + NN  L   S R+                            
Sbjct: 758 ----FGRKCFIKDI----NSNNHALRNFSERA---------------------------- 781

Query: 596 KLTENIVQAVSRDILAEGMMNA---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651
                 +Q  S DI+   M++     K GY ++L VHDE++ E P+   +    ++  +M
Sbjct: 782 -AVNAPLQGTSADIIKMSMIHLFDRLKTGY-MILQVHDELLFEVPEDHVDNTVKLIKEVM 839

Query: 652 TSNPSWAKGLPLKAE 666
                    +PLK +
Sbjct: 840 EGIVK--LSVPLKVD 852


>gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
 gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
          Length = 910

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/556 (17%), Positives = 181/556 (32%), Gaps = 76/556 (13%)

Query: 33  FAFGFDDHPVELWDCVH------------DPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
             F  D H +   D               +P     + E L ++ +  + +N       L
Sbjct: 367 ITFSLDLHKLYFIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLIFL 426

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                 +I     I  ++L         L A    L L+        E+I       T+ 
Sbjct: 427 LNFLRTEITSASCIDDIMLMHYI-----LSAGKNDLSLN--------EIIQ------TYN 467

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
             Y      ++  W                  K L      +  + Y+ + I + G  ++
Sbjct: 468 KSYSEQYSENKVCWLKNTFDNLM---SELFKNKLLHCYYEIDLPICYILRNIENNGIKIN 524

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
           V L   L+  +  +   L+Q++  +  G   +    ++L   LF    L    +++ T  
Sbjct: 525 VPLLKELSAQLKHKIELLEQQIYKIC-GQEFNIASPKQLGEILFDVLKLPHAKVSQKTKS 583

Query: 261 -----RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 VL +  +   +   +     + ++     ++TL   +N++     T     ++ 
Sbjct: 584 YSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQTSTT 643

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           T R S      QN+P  S    +                         VRS  +A +G K
Sbjct: 644 TSRLSSHSPNLQNIPIRSEYGLK-------------------------VRSAFVAPQGSK 678

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++ AD + IE R+L++ A  +     F  GED++ +T A+ F +   QVT++ R   K +
Sbjct: 679 ILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEEHRRKAKAI 738

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y   A      A    ++    A  +  N   +E+     +    ++   E+   
Sbjct: 739 NFGVIYGISAFGV---AKQLNISNTEAAQYI--NHYFQEYPSIRQYMDETKKFAVENGYV 793

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
              IG  C          +S      N   +A         A    K   +    +   K
Sbjct: 794 KNMIGRRC-----YIPLINSSNLTTRNFAQRAAINAPIQSTASDIAKIAMIQYEKLIYSK 848

Query: 556 -NNLILMLPSGRSLVY 570
              + L+L     LV+
Sbjct: 849 YPAIKLLLQVHDELVF 864


>gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
 gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
          Length = 887

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/512 (16%), Positives = 158/512 (30%), Gaps = 128/512 (25%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
             L      E     +   +  +G+ +D      L Q    E   L++++  L  G   +
Sbjct: 488 DLLSLAKEIEMPFMKVLMNMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLI-GEDFN 546

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L   L+ +  L       T  + +L    K  P    +   R   ++ +   + 
Sbjct: 547 LNSPKQLSGVLYEKLNLPKNKSHSTDEKNLLKIMDK-HPSIPLILEYR-ELNKLSNTYIT 604

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L+   + D ++  T                                 Q  T      + 
Sbjct: 605 PLLRLKDKDDKIHTTFI-------------------------------QTGTATGRLSSH 633

Query: 353 DPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            P+   I         +R   I+S +   L+  D + IE R+LA  + ++  ++AF  G 
Sbjct: 634 SPNLQNIPVRSSKGLLIRKGFISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGR 693

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D+++ T    F        K++R+I K +   L Y  G+   +K++ T  + LN      
Sbjct: 694 DIHLETSRALFG---ENSAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEA---- 743

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                   K        R   + + L+ 
Sbjct: 744 ----------------------------------------KSYIEAYFKRFPSIKDYLNN 763

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             E+ ++  KA     R  V       D               Y      R  +N     
Sbjct: 764 MQEEILKTSKAFTLLGRYRVFDFNGVND---------------YVKGNYLREGVNA---- 804

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDE 641
                         I Q  + D+L  GM+  ++         ++L VHDE++ E  + + 
Sbjct: 805 --------------IFQGSASDLLKLGMLKVSERFKNDSSVRLLLQVHDELIFEIEEKNA 850

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    + +N  +A  +PL+   + +KR+
Sbjct: 851 LELQQEIQRILNNEVYALRVPLETSAFIAKRW 882


>gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon]
 gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon]
          Length = 609

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/594 (19%), Positives = 194/594 (32%), Gaps = 89/594 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLK 58
           +  L +D ET    DL   GI K   D  + L  F    +P E W        V      
Sbjct: 35  LRILGLDTET---TDL---GIYK--PDFGIRLIQF---GNPWESWVLPVERGGVFVGAAV 83

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
            AL+  +   V HN+ F+  V++    + +    W         + L  P A K  G   
Sbjct: 84  TALQKVE-KFVIHNAAFDLQVIERTLGVPME-QMWPKVEDTKIYSHLVDPRAYKEGGTGH 141

Query: 117 KLSS--------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           KL             EE K  +AR  K             +  +    +  Y   D  + 
Sbjct: 142 KLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 169 REIFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +  ++ PL  +        E +L  +   +   G+ +DV  +  L+    + +++   
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSA-DMLRKSEHYT 258

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            +    YG V S    EKL   L   TG+ ++  T T  ++V +   +   +        
Sbjct: 259 AVARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++       T          +R  ++   A                    R H  ++
Sbjct: 317 AIEAKKWGSWEKTW---------VRNFIERRDA------------------NDRVHPGIN 349

Query: 341 QIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +        TS+P    + S    VR C +A  G+ +   D    E RVLA ++G+Q  
Sbjct: 350 PLQARTGRMSTSNPSAQNLPSGDWMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTM 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+   DL+  T                R IGK+    + Y GGA    K+A+  G+ 
Sbjct: 410 LRAFKEESDLHQVTA---------DAAGVDRKIGKMANFLVCYGGGAG---KLATNAGIT 457

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 ++      E +         + +   + A    FI T   R          R  
Sbjct: 458 FPEAKKVL------EVFATTYPGVDTLNKRMQQEAGSAGFITTPTGR---RLPVDPDRAY 508

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              N L Q+  + +     +   +    P + +      L L LP   +     
Sbjct: 509 SALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVL-LSLPEADAEAAVK 561


>gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57]
          Length = 893

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 104/646 (16%), Positives = 200/646 (30%), Gaps = 157/646 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVGEA 115
           L+EAL +        N++F+          D+     + + + A+    L        + 
Sbjct: 371 LEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP---LLSFLKAKYQVSLEDIRIQDTQI 427

Query: 116 LKLSSQKMEEG-KELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           L       + G  E++ ++ K E   HE + D    +      L          V     
Sbjct: 428 LAFLKNPEKVGFDEVLKQYLKEEWIPHEKIKDFKTKSKAGKLELLS--------VELNAL 479

Query: 173 KRLEPLSSK--------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           KRL     K              E     +   +  +G+ +D      L Q    E   L
Sbjct: 480 KRLCEYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVL 539

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           ++++  L  G+  +    ++L   L+ + GL       T  + +L    K  P    +  
Sbjct: 540 ERQILELI-GVDFNLNSPKQLSEILYEKLGLPKNKSHSTDEKSLLKILDK-HPSIALILE 597

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++        L+   + D ++  T                               
Sbjct: 598 YR-ELNKLFNTYTTPLLRLKDKDDKIHTTFI----------------------------- 627

Query: 339 LDQIITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392
             Q  T      +  P+   I         +R   IAS +   L+  D + IE R+LA  
Sbjct: 628 --QTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHF 685

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  + AF  G D+++ T    F      + K++R+I K +   L Y  G+   +K++
Sbjct: 686 SQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLS 739

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            T  + LN     ++                                             
Sbjct: 740 ETLNIPLNEAKSYIE--------------------------------------------A 755

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R S + + L++  E+ ++  KA     R  V       D               Y  
Sbjct: 756 YFKRFSSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGAND---------------YIK 800

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLT 627
               R  +N                   I Q  + D+L  GM+  ++         ++L 
Sbjct: 801 GNYLREGVNA------------------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQ 842

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE++ E  + +          + ++  +   +PL+   + +KR+
Sbjct: 843 VHDELIFEIEEKNAPELQQEIQRILNDEVYPLRVPLETSAFMAKRW 888


>gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8]
 gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8]
          Length = 893

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/503 (16%), Positives = 158/503 (31%), Gaps = 128/503 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +  +G+ +DV     L Q    E   L++++  L  G+  +    ++L  
Sbjct: 503 ETPFMKVLMGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLI-GVDFNLNSPKQLGE 561

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            L+ + GL       T  + +L    K  P    +   R   ++        L+   + D
Sbjct: 562 VLYEKLGLPKNKSHSTDEKNLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKDKD 619

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            ++  T                                 Q  T      +  P+   I  
Sbjct: 620 DKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNIPV 648

Query: 362 D-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T   
Sbjct: 649 RSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKA 708

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F      + K++R+I K +   L Y  G+   +K++ T  + LN               
Sbjct: 709 LFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEA------------- 749

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                          K        R   + + L+   E+ ++  
Sbjct: 750 -------------------------------KSYIEAYFKRFPSIKDYLNGMKEEILKTS 778

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
           KA     R  V       D               Y      R  +N              
Sbjct: 779 KAFTLLGRYRVFDFNGVND---------------YVKGNYLREGVNA------------- 810

Query: 596 KLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                I Q  + D+L  GM+  ++         ++L VHDE++ E  + +          
Sbjct: 811 -----IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQR 865

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
           + ++  +   +PL+   + +KR+
Sbjct: 866 ILNDEVYPLRVPLETSAFIAKRW 888


>gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
 gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
          Length = 1025

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 153/498 (30%), Gaps = 131/498 (26%)

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            ++  E  +  + + + D G  VD+     + +    +          +  G   + +  +
Sbjct: 615  MTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSADAEFAQNMAWKVA-GSSVNLQSPK 673

Query: 238  KLKTWLFLETGLHLEDLTE----TTCQRVLSSN-KKLTPQ--AIQVFNNRMRASRSAVLK 290
            +L+  LF   GL     T+    TT    L +   KL P+  A Q     ++   +  LK
Sbjct: 674  QLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLK 733

Query: 291  --LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
              + +L++A + D R                              R H   +Q I     
Sbjct: 734  QIVQSLIDAAHYDDR------------------------------RIHTTFEQTIAATGR 763

Query: 349  SITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF 402
              ++DP+   I         +R+  I  E  + L+  D + +E R++A  + ++  ++AF
Sbjct: 764  LSSADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKTLIEAF 823

Query: 403  ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             +G D +    +  + +   QVT DQR+  K M       G A           L+++  
Sbjct: 824  RSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSY-----GLAYGLSTYGLAKQLSISPA 878

Query: 463  AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                     E +K  +      V +   
Sbjct: 879  ---------------------------------------EAEMLKNKYFDTFGNVHDYLE 899

Query: 523  ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
             L    ++ +   + +  R+R                  L S                  
Sbjct: 900  SLVSKAKE-LGYTETMFGRRR--------------YFPQLSSNNRAS------------- 931

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636
                  RE    G L   I Q  + DI+   M+         K    ++L +HDE++ E 
Sbjct: 932  ------REAAERGALNAPI-QGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEI 984

Query: 637  PDTDEFNASMLYHLMTSN 654
               ++     +      N
Sbjct: 985  SHGEQAQVENIVRKAMEN 1002


>gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 842

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 88/530 (16%), Positives = 190/530 (35%), Gaps = 69/530 (13%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIH 91
           F F   D    +    H+      + +  E   + +++ +N       +K      +   
Sbjct: 365 FGFVICDGERNIVLLNHENTDYGSINKVYEKLKEKSVIGYN-------IKEYLKKGMGYR 417

Query: 92  RWICTLVLARSNGLPSA--LKAVGEA-LKLSSQKMEE--GKELIARFCKGETHECLYDRN 146
           ++   ++     G  S+  L+ +  + L ++ +K EE   K       + E  + L++R 
Sbjct: 418 QYFDIMLAWYVLGTESSQDLENIIFSELGVNLEKFEEQFKKRKPEEISEEEKTQFLWERA 477

Query: 147 KPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                    L       D+T   E +  +L P+ +           +   G  ++     
Sbjct: 478 FYVKELKEILENRLKSEDLTNVFENLENKLVPVLAS----------MEMYGIKINKEYFE 527

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
              + +     KL+ E+ SL  G   +    ++L   LF + G+     T+T     +  
Sbjct: 528 NYKKELQENIEKLEGEIYSL-LGEAFNIGSPKQLAEILFDKMGIEPVKKTKTGYSTDVEV 586

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            ++L  + I++    +                           ++ G ++         P
Sbjct: 587 LEELALRGIEIAEKLL---------------------------EYRGFTKLLSTYVEPLP 619

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVAD 380
                   R H   +Q  T      +++P+   I         +R   I+ EG  LV  D
Sbjct: 620 KLAD-EKDRIHTTFNQNGTSTGRLSSTNPNIQNIPVRTDEGIKIRKGFISEEGWSLVSFD 678

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELAL 439
            + IE RVLA ++ ++  + A++  +DL+  T  +  F     QVT+++R+I KV+  ++
Sbjct: 679 YSQIELRVLAELSKDENLVLAYKKDKDLHDLTARKIFFKADEEQVTREERSIAKVINFSI 738

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y         ++    + +   +  +KT    E++   + F   + EN   +   +   
Sbjct: 739 LYGKTPF---GLSKELKIPVADASLYIKT--YFEQYPKVKRFLENILENAKLNGFVETLY 793

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
           GT     ++  +  +S    L  + ++    T+  G A    K+  + L 
Sbjct: 794 GT-----RRYIKGINSSNKNLQAQANRMAVNTVVQGTAANIIKKVMIKLY 838


>gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 1015

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 79/498 (15%), Positives = 154/498 (30%), Gaps = 131/498 (26%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           ++  E  +  + + + D G  VD+    ++ +    +          +  G   + +  +
Sbjct: 605 MTDLEMPISRVLRGMEDVGAAVDMQRLSSMLKQFSADAEFAQNMAWKVA-GSSVNLQSPK 663

Query: 238 KLKTWLFLETGLHLEDLTE----TTCQRVLSSN-KKLTPQ--AIQVFNNRMRASRSAVLK 290
           +L+  LF   GL     T+    TT    L +   KL P+  A Q     ++   +  LK
Sbjct: 664 QLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLK 723

Query: 291 --LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             + +L++A + D R                              R H   +Q I     
Sbjct: 724 QIVQSLIDAAHYDDR------------------------------RIHTTFEQTIAATGR 753

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF 402
             ++DP+   I         +R+  I  E  + L+  D + +E R++A  + ++  ++AF
Sbjct: 754 LSSADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKTLIEAF 813

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +G D +    +  + +   QV+ DQR+  K M       G A           L+++  
Sbjct: 814 RSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSY-----GLAYGLSTYGLAKQLSISPA 868

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                    E +K  +      V +   
Sbjct: 869 ---------------------------------------EAEMLKNKYFDTFGNVHDYLE 889

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            L    ++ +   + +  R+R                  L S                  
Sbjct: 890 SLVSKAKE-LGYTETMFGRRR--------------YFPQLSSNNRAS------------- 921

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636
                 RE    G L   I Q  + DI+   M+         K    ++L +HDE++ E 
Sbjct: 922 ------REAAERGALNAPI-QGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEI 974

Query: 637 PDTDEFNASMLYHLMTSN 654
              ++     +      N
Sbjct: 975 SHGEQAQVENIVRKAMEN 992


>gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
 gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
          Length = 948

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 80/484 (16%), Positives = 155/484 (32%), Gaps = 113/484 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L S E  +  +   +   G  VD+A    +   +  +  +  +       G   + +  +
Sbjct: 538 LKSIELPVSQVLHGMEQVGAQVDMARLVQMRDQLAADAAQAQETAWQFA-GEQVNLQSPK 596

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L+  LF + GL     T++      ++       A+Q   +R   +  A   L+ L   
Sbjct: 597 QLQKILFEDMGLKPTKKTKSGSYTTNAA-------ALQTLRDRSYDNDRACQFLDAL--- 646

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L     ++  +    +    N     R H   +Q +       + DP+  
Sbjct: 647 ----------LMHREKNKLKQIVQTLIDATNR-HDGRIHTTFEQTVAATGRLSSVDPNLQ 695

Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G+D +  
Sbjct: 696 NIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFHKY 755

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             +  + +    +T DQR+  K M                    GL+    A  +K    
Sbjct: 756 VASLVYGIPVDDITSDQRSHVKAMSY--------------GLAYGLSTYGLAQQLKIKP- 800

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           E +K  +     +V E    L  +  + 
Sbjct: 801 -----------------------------KEAESLKNQYFATFGKVHEYLESLVSSARE- 830

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            +     I  +RR  P +                                    +  R+ 
Sbjct: 831 -KGYTETIFGRRRYFPGLKSPN--------------------------------RAVRDA 857

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                L   I Q  + DI+   M+ A  A      G  ++L +HDE+V E    +E  A+
Sbjct: 858 AERAALNAPI-QGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQAT 916

Query: 646 MLYH 649
            L  
Sbjct: 917 ALVK 920


>gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 474

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/505 (16%), Positives = 159/505 (31%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 82  EVETPFVKVLMGMEFQGFKIDAPYFKCLEQEFKNELHVLERQILDLI-GVDFNLNSPKQL 140

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ + GL       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 141 SEVLYEKLGLPKNKSHSTDEKSLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 198

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 199 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 227

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 228 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 287

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F    A   K++R+I K +   L Y  G+   +K++ T  ++LN             
Sbjct: 288 KALFGGDLA---KEKRSIAKSINFGLVYGMGS---KKLSETLNISLNEA----------- 330

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 331 ---------------------------------KSYIEAYFKRFPSIKDYLNRMKEEILK 357

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 358 TSKAFTLLGRYRVFDFTGAND---------------YIKGNYLREGVNA----------- 391

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 392 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEI 444

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + +KR+
Sbjct: 445 QRILNDEVYPLRVPLETSAFVAKRW 469


>gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
 gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
          Length = 893

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 96/557 (17%), Positives = 191/557 (34%), Gaps = 75/557 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVGEA 115
           L+EAL +        N++F+          D+     + + + A+    L +      + 
Sbjct: 371 LEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP---LLSFLKAKYQVSLENIRIQDTQI 427

Query: 116 LKLSSQKMEEG-KELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           L       + G  E++  + K E   HE + D    +  E            + +     
Sbjct: 428 LAFLKNPEKVGFDEVVREYLKEELIPHETIKDFKTKSRVEKLEQ--------LDMELNAL 479

Query: 173 KRLEPLSSK--------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           KRL     K              E     +   +  +G+ +D      L Q    E   L
Sbjct: 480 KRLCEYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKDELHVL 539

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           ++++  L  G+  +    ++L   L+ +  L       T  + +L    K  P    +  
Sbjct: 540 ERQILDLI-GVDFNLNSPKQLSEILYEKLELPQNKSRSTDEKSLLKILDK-HPSIALILE 597

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++        L+   + D ++  T    G + TGR S      QN+P  S     
Sbjct: 598 YR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPK--- 652

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R   IA S+   L+  D + IE R+LA  + ++ 
Sbjct: 653 ----------------------GLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKD 690

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF  G D+++ T    F      + K++R+I K +   L Y  G+   +K++ T  +
Sbjct: 691 LMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLNI 744

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA-WRQKHSR 516
            LN     ++     + +   +++   M+E      ++     T   R +   +   +  
Sbjct: 745 PLNEAKSYIEA--YFKRFPSIKDYLNRMKEEI----LKTSKAFTLLGRYRVFDFTGANDH 798

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +    N L +     I  G A    K   + +    K+  ++ L+L     L++     N
Sbjct: 799 IKG--NYLREGV-NAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKN 855

Query: 577 RSYLNTTTRQLTREYTY 593
              L    +++  +  Y
Sbjct: 856 APELQQEIQRILNDEVY 872


>gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 180

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 19/185 (10%)

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               + +  +WR  +  ++  W ++ +A + TI        R + +V  +        L 
Sbjct: 5   EEELQPLVNSWRNSNPMITAFWWDIDRAVKTTITQ------RIQTEVRGICFFYKSGMLF 58

Query: 560 LMLPSGRSLVYRDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDIL 610
           + LPSGR L Y           G + +Y    +T++  R  +YG K  ENIVQAVSRDIL
Sbjct: 59  IKLPSGRLLSYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVSRDIL 118

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
              M         IV  VHDE++ E   + + + +++   M  +P W   + L+A+GYE+
Sbjct: 119 CYAMKTLRH--CFIVGHVHDELIIEC--SPDVDTNVICKQMGRSPDWMPDILLRADGYET 174

Query: 671 KRYRK 675
             Y+K
Sbjct: 175 NFYKK 179


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 83/520 (15%), Positives = 172/520 (33%), Gaps = 102/520 (19%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           FID ET +P D              + LF  G +  P+ + D +     P+++K+ +   
Sbjct: 26  FIDTET-TPKD--------------IRLFQVGLESGPIYVIDFLFVKRAPELIKDIIAKK 70

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
            V    HN  ++   LK     DI  +    T+V A+  GL + +         + + ++
Sbjct: 71  GVA--GHNLKYD---LKYLMKYDIHPYTTFDTMVGAQLIGL-NRVSLASVYNHFTGESID 124

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + ++      K  T   ++                Y   DV V R ++++L+   +KE  
Sbjct: 125 KKEQFSNWSSKELTESQIF----------------YAAKDVEVLRLLYEKLKNELNKEPT 168

Query: 185 LWYLDQT--------------------------INDRGYCVDVALAHTLNQIVDVERTKL 218
           +  + Q                           I   G  +D     T+       + +L
Sbjct: 169 IIEILQKSRVAKVFGLESTYAIIEMGFVQELAKIEHTGIGIDTKEIETM-------KKQL 221

Query: 219 DQELESLTYG----LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
            ++ + L               +K+  +L     + L    +                 I
Sbjct: 222 QKKTQELAMNFYIKYRIDISSPKKVGEFLENHLNISLPRTDKDNIIT-------DDSVLI 274

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +     ++  +  +    +      +L   L++                      +R
Sbjct: 275 EHLDYENEKAKDVISSVLEFRKLHKLQEKLSEILEYNE-------------------NNR 315

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            H E  QI        +S P+ +Q I   +RS + A +G   V+AD + IE R+ A    
Sbjct: 316 IHPEFWQIGAVTGRMSSSRPN-VQNIPRELRSILKAKDGYVFVIADFSQIELRIAAEYVK 374

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS- 453
           ++  +     GEDL+  T +     +   +TK++R   K     L Y    K+    A  
Sbjct: 375 DEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKSLSLYARN 434

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           + G++++              ++  + +   +++      
Sbjct: 435 SYGIDMSIEEAKRFREVFFSTFQGIKAWHERIKKELKAKG 474


>gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27]
 gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27]
          Length = 905

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 156/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L+ ++  L  G+  +    ++L
Sbjct: 513 DIETPFMKVLMGMEFQGFKIDAPYFKHLEQEFKNELHVLEHQILDLI-GVDFNLNSPKQL 571

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ + GL       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 572 SEVLYEKLGLPKNKSHSTDEKNLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 629

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 630 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 658

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 659 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 718

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F    A   K++R+I K +   L Y  G+   +K++ T  + L+             
Sbjct: 719 KALFGGDLA---KEKRSIAKSINFGLVYGMGS---KKLSETLNIPLSEA----------- 761

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 762 ---------------------------------KSYIEAYFKRFPSIKDYLNRMKEEILK 788

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 789 TSKAFTLLGRYRVFDFTGVND---------------YIKGNYLREGVNA----------- 822

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 823 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPKLQREI 875

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + + R+
Sbjct: 876 QRILNDEVYPLRVPLETSAFVANRW 900


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 102/524 (19%), Positives = 168/524 (32%), Gaps = 106/524 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62
           LF+D ET         G         + L   G     + L D           LKE L 
Sbjct: 25  LFLDTET--------TG-------DRLRLVQLG-GQGEIFLLDLFELGERGVLFLKELLS 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
              V  V HN  F+   LK  +   I  +    T+V ++             A+    Q 
Sbjct: 69  QKGV--VGHNLKFD---LKYLYRYHIEPYAVFDTMVASQLLAELDRHSLQSVAMHYLGQV 123

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------- 175
           +++  +L     +  T   L                EY   DV V R++F  L       
Sbjct: 124 LDKSLQLSDWGSRVLTKAQL----------------EYAALDVVVVRDLFPILLEKLNQC 167

Query: 176 -------------------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
                               P++  E         +   G  VD     ++         
Sbjct: 168 PVREEILLKTRTSRVFGLQNPVAIVEMAFVQEVAKLELNGLPVDTQELESV---FREYSR 224

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273
           K+ + +              ++L  +L    GL L    +   +T  + LS +    P  
Sbjct: 225 KVQRMIMDFISTHRVDPMSPKQLGEFLTRRLGLDLPKTEKGNVSTDDKALSEHAH-HPVV 283

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R  AS+  + KL  + E                               NL R +
Sbjct: 284 RHILEIR--ASKKILDKLEEIRE-------------------------------NL-RGN 309

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           R + E  QI        +S+P+ +Q I   +R    A EG   V+AD + IE R+ A   
Sbjct: 310 RVYPEFKQIGAVTGRMASSNPN-VQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYV 368

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           GE   ++AF+ G DL+  T +         +TK++R + K +   L Y   AK   + A+
Sbjct: 369 GEIRMIRAFQEGRDLHRYTASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAA 428

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
           T G++L               +E   ++   ++E   +      
Sbjct: 429 TYGIDLPVEEAQAIRERFFSYFEGFRDWHNRVKEELKKTGKSSG 472



 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 75/247 (30%), Gaps = 33/247 (13%)

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
           F+++ + TG   ++  ++            AE    ++  +  +  +          R+ 
Sbjct: 315 FKQIGAVTGRMASSNPNVQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMI 374

Query: 508 KAW---RQKHSRVSELW--NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
           +A+   R  H   + +          ++  +  KA+       +    + +      + L
Sbjct: 375 RAFQEGRDLHRYTASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDL 434

Query: 563 PSGRSLVYRDV----------GNNRSYLNTTTRQLTREYTYGGK---------LTENIVQ 603
           P   +   R+            +NR          +  +T  G+              +Q
Sbjct: 435 PVEEAQAIRERFFSYFEGFRDWHNRVKEELKKTGKSSGHTLLGRSYVAHTFPDAVNYPIQ 494

Query: 604 AVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
               D+L   ++              +V  VHDEIV E P      A  +  L+      
Sbjct: 495 GTGADLLKLAVLMLDAELRKEGIPAKVVNLVHDEIVLECPQE---VAQEVQTLLERAMKR 551

Query: 658 AKGLPLK 664
           A  + LK
Sbjct: 552 AGSIILK 558


>gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1]
 gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1]
          Length = 899

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 80/503 (15%), Positives = 157/503 (31%), Gaps = 128/503 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L  
Sbjct: 509 ETPFVKVLMDMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLI-GVDFNLNSPKQLSE 567

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            L+ +  L       T  + +L    K  P    +   R   ++        L+   + D
Sbjct: 568 VLYEKLELPQNKSHSTDEKNLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKDKD 625

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            ++  T                                 Q  T      +  P+   I  
Sbjct: 626 DKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNIPV 654

Query: 362 D-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T   
Sbjct: 655 RSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKA 714

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F    A   K++R+I K +   L Y  G+   +K++ T  ++LN               
Sbjct: 715 LFGGDLA---KEKRSIAKSINFGLVYGMGS---KKLSETLNISLNEA------------- 755

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                          K        R   + + L++  E+ ++  
Sbjct: 756 -------------------------------KSYIEAYFKRFPSIKDYLNRMKEEILKTS 784

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
           KA     R  V       D               Y      R  +N              
Sbjct: 785 KAFTLLGRYRVFDFNGVND---------------YVKGNYLREGVNA------------- 816

Query: 596 KLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                I Q  + D+L  GM+  ++         ++L VHDE++ E  + +          
Sbjct: 817 -----IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQR 871

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
           + ++  +   +PL+   + + R+
Sbjct: 872 ILNDEVYPLRVPLETSAFVANRW 894


>gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75]
          Length = 893

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 82/512 (16%), Positives = 159/512 (31%), Gaps = 128/512 (25%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
             L      E     +   +  +G+ +D      L Q    E   L++++  L  G+  +
Sbjct: 494 NLLSLAKEVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELI-GVDFN 552

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               ++L   L+ +  L       T  + +L    K  P    +   R   ++       
Sbjct: 553 LNSPKQLGEILYEKLKLPKNKSHSTDEKNLLKILDK-HPSIPLILEYR-ELNKLFNTYTT 610

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L+   + D ++  T                                 Q  T      + 
Sbjct: 611 PLLRLKDKDDKIHTTFI-------------------------------QTGTATGRLSSH 639

Query: 353 DPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            P+   I         +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G 
Sbjct: 640 SPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGR 699

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D+++ T    F    A   K++R+I K +   L Y  G+   +K++ T  ++LN      
Sbjct: 700 DIHLETSKALFGGDLA---KEKRSIAKSINFGLVYGMGS---KKLSETLNISLNEA---- 749

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                   K        R   + + L++
Sbjct: 750 ----------------------------------------KSYIEAYFKRFPSIKDYLNR 769

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             E+ ++  KA     R  V       D               Y      R  +N     
Sbjct: 770 MKEEILKTSKAFTLLGRYRVFDFTGAND---------------YIKGNYLREGVNA---- 810

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDE 641
                         I Q  + D+L  GM+  ++         ++L VHDE++ E  + + 
Sbjct: 811 --------------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNA 856

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    + ++  +   +PL+   + +KR+
Sbjct: 857 LELQQEIQRILNDEVYPLRVPLETSAFVAKRW 888


>gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464]
          Length = 893

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 103/649 (15%), Positives = 201/649 (30%), Gaps = 163/649 (25%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112
           L+EAL +        N++F+          D+     + + + A+      +L+ +    
Sbjct: 371 LEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP---LLSFLKAKYQ---VSLENIRIQD 424

Query: 113 GEALKLSSQKMEEG-KELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            + L       + G  E++  + K E   HE + D    +  E            + +  
Sbjct: 425 TQILAFLKNPEKVGFDEVVREYLKEELIPHETIKDFKTKSKVEKLEQ--------LDMEL 476

Query: 170 EIFKRLEPLSSK--------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              KRL     K              E  L  +   +  +G+ +D      L Q    E 
Sbjct: 477 NALKRLCEYFEKGGLEEGLLALARGVETPLMKVLMGMEFQGFKIDAPYFKRLEQEFKNEL 536

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             L++++  L  G+  +    ++L   L+ +  L       T  + +L    K  P    
Sbjct: 537 HVLERQILDLI-GVDFNLNSPKQLSEILYEKLELPQNKSRSTDEKSLLKILDK-HPSIAL 594

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++        L+   + D ++  T                            
Sbjct: 595 ILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFI-------------------------- 627

Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVL 389
                Q  T      +  P+   I         +R   IAS +   L+  D + IE R+L
Sbjct: 628 -----QTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 682

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A  + ++  + AF  G D+++ T    F      + K++R+I K +   L Y  G+   +
Sbjct: 683 AHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGS---K 736

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           K++ T  + LN                                              K  
Sbjct: 737 KLSETLNIPLNEA--------------------------------------------KSY 752

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                 R   + + L +  E+ ++  KA                           GR  V
Sbjct: 753 IEAYFKRFPSIKDYLKRMKEEILKTSKAFTLL-----------------------GRYRV 789

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDI 624
           +   G N        R+              I Q  + D+L  GM+  ++         +
Sbjct: 790 FDFAGVNDHIKGNYLREG----------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRL 839

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE++ E  + +          + ++  +   +PL+   + +KR+
Sbjct: 840 LLQVHDELIFEIEEKNALKLQQEIQRILNDEVYPLRVPLETSAFMAKRW 888


>gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32]
          Length = 893

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 156/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 501 EVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELI-GVDFNLNSPKQL 559

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ +  L       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 560 SEILYEKLELPKNKSRSTDEKSLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 617

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 618 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 646

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  + AF  G D+++ T 
Sbjct: 647 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETS 706

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + LN             
Sbjct: 707 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEA----------- 749

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 750 ---------------------------------KSYIEAYFKRFPSIKDYLNRMKEEILK 776

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 777 TSKAFTLLGRYRVFDFTGAND---------------YIKGNYLREGVNA----------- 810

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 811 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEI 863

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + +KR+
Sbjct: 864 QRILNDEVYPLRVPLETSAFIAKRW 888


>gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole]
          Length = 609

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 115/594 (19%), Positives = 193/594 (32%), Gaps = 89/594 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLK 58
           +  L +D ET    DL   GI K   D  + L  F    +P E W        V      
Sbjct: 35  LRILGLDTET---TDL---GIYK--PDFGIRLIQF---GNPWESWVLPVERGGVFVGAAV 83

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
            AL+      V HN+ F+  V++    + +    W         + L  P A K  G   
Sbjct: 84  TALQKVQ-RFVIHNAAFDLQVIERTLGVPME-QMWPKVEDTKIYSHLVDPRAYKEGGTGH 141

Query: 117 KLSS--------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           KL             EE K  +AR  K             +  +    +  Y   D  + 
Sbjct: 142 KLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 169 REIFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +  ++ PL  +        E +L  +   +   G+ +DV  +  L+    + +++   
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSA-DMLRKSEHYT 258

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            +    YG V S    EKL   L   TG+ ++  T T  ++V +   +   +        
Sbjct: 259 AVARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTTTGKRQVNAELLEALAEEGNALAKA 316

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++       T          +R  ++   A                    R H  ++
Sbjct: 317 AIEAKKWGSWEKTW---------VRNFIERRDA------------------NDRVHPGIN 349

Query: 341 QIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +        TS+P    + S    VR C +A  G+ +   D    E RVLA ++G+Q  
Sbjct: 350 PLQARTGRMSTSNPSAQNLPSGDWMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTM 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AFE   DL+  T                R IGK+    + Y GGA    K+A+  G+ 
Sbjct: 410 LRAFEEESDLHQVTA---------DAAGVDRKIGKMANFLVCYGGGAG---KLATNAGIT 457

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 ++      E +         + +   + A    FI T   R          R  
Sbjct: 458 FPEAKKVL------EVFATTYPGVDTLNKRMQQEAGSAGFITTPTGR---RLPVDPDRAY 508

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              N L Q+  + +     +   +    P + +      L L LP   +     
Sbjct: 509 SALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVL-LSLPEADAEAAVK 561



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 22/100 (22%)

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +  P+GR L   D     S LN                   ++Q+ SRD+    ++   
Sbjct: 491 FITTPTGRRL-PVDPDRAYSALNY------------------LIQSSSRDVTGAAVLRLH 531

Query: 619 KAGY--DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNP 655
           +AG+  ++ L VHDE++   P+ D E     +  +M    
Sbjct: 532 EAGFTPNMRLVVHDEVLLSLPEADAEAAVKEVGQIMEQRI 571


>gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
 gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
          Length = 944

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 134/403 (33%), Gaps = 47/403 (11%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E+ L  +  ++   G  +D+ +  TL+     + + L+ E+  L  G   +    ++L T
Sbjct: 546 EKPLIRVLDSMEKVGMLIDIDILKTLSSTFSEKVSVLENEIYRLA-GTEFNIASSKQLGT 604

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF + G+        +     +  + L            +                   
Sbjct: 605 VLFDKMGIKKSKK--LSSGSYSTDAEVLNDLVFNEIEIADK------------------- 643

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360
                 LQ+   ++           Q      R H     I T      +S+P+   I  
Sbjct: 644 -----ILQWRHFTKLKSTYTDALGKQINSNSGRIHTFYSMISTATGRLSSSNPNLQNIPI 698

Query: 361 ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                + +R   +A +G KLV AD + IE R++A +AG Q    AF   +D++  T  + 
Sbjct: 699 RSEEGNAIRRAFVARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQDIHSITAEQI 758

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F      + K+ R   K +   + Y   A     +A   G++ +     +   +  + + 
Sbjct: 759 FCT--QSLDKNLRRKAKSINFGIIYGMSAF---GLAKQLGISRSEANAYID--NYFKSYP 811

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           + +++   ++     +       G  C       R  +S  +   N   +A       G 
Sbjct: 812 EIQSYMNNIKIYAKTYGYTRTIFGRKC-----FIRDINSSNAAARNFSERAAINAPLQGT 866

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +    K   + L       +   L+L     L++  +     Y
Sbjct: 867 SADIIKMSMIHLFDKITHGS---LILQVHDELLFEILEEYVDY 906


>gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99]
 gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I
 gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99]
          Length = 897

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 157/505 (31%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 505 DIETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLI-GVDFNLNSPKQL 563

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ + GL       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 564 GEVLYDKLGLPKNKSHSTDEKNLLKILDK-HPSIPLILEYR-ELNKLFNTYTTPLLRLKD 621

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 622 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 650

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 651 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 710

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + L+             
Sbjct: 711 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLSIPLSEA----------- 753

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L+   E+ ++
Sbjct: 754 ---------------------------------KSYIEAYFKRFPSIKDYLNGMREEILK 780

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 781 TSKAFTLLGRYRVFDFTGVND---------------YVKGNYLREGVNA----------- 814

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 815 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEI 867

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + +KR+
Sbjct: 868 QRILNDEVYPLRVPLETSAFIAKRW 892


>gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 1025

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/498 (16%), Positives = 153/498 (30%), Gaps = 131/498 (26%)

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            ++  E  +  + + + D G  VD+     + +    +          +  G   + +  +
Sbjct: 615  MTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSADAEFAQNMAWKVA-GSSVNLQSPK 673

Query: 238  KLKTWLFLETGLHLEDLTE----TTCQRVLSSN-KKLTPQ--AIQVFNNRMRASRSAVLK 290
            +L+  LF   GL     T+    TT    L +   KL P+  A Q     ++   +  LK
Sbjct: 674  QLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLK 733

Query: 291  --LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
              + +L++A + D R                              R H   +Q I     
Sbjct: 734  QIVQSLIDAAHYDDR------------------------------RIHTTFEQTIAATGR 763

Query: 349  SITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF 402
              ++DP+   I         +R+  I  E  + L+  D + +E R++A  + ++  ++AF
Sbjct: 764  LSSADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKTLIEAF 823

Query: 403  ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             +G D +    +  + +   QVT DQR+  K M       G A           L+++  
Sbjct: 824  RSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSY-----GLAYGLSTYGLAKQLSISPA 878

Query: 463  AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                     E +K  +      V +   
Sbjct: 879  ---------------------------------------EAEMLKNKYFDTFGNVHDYLE 899

Query: 523  ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
             L    ++ +   + +  R+R                  L S                  
Sbjct: 900  SLVSKAKE-LGYTETMFGRRR--------------YFPQLSSNNRAS------------- 931

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636
                  RE    G L   I Q  + DI+   M+         K    ++L +HDE++ E 
Sbjct: 932  ------REAAERGALNAPI-QGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEI 984

Query: 637  PDTDEFNASMLYHLMTSN 654
               ++     +      N
Sbjct: 985  SHGEQEQVENIVRKAMEN 1002


>gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
 gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
          Length = 895

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/484 (16%), Positives = 154/484 (31%), Gaps = 113/484 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L S E  +  +   +   G  VD+     +   +  +  +  +       G   + +  +
Sbjct: 485 LKSIELPVSQVLHGMEQVGAQVDMTRLVQMRDQLAADAAQAQETAWQFA-GEQVNLQSPK 543

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L+  LF + GL     T++      ++       A+Q   +R   +  A   L+ L   
Sbjct: 544 QLQKILFEDMGLKPTKKTKSGSYTTNAA-------ALQTLRDRSYDNDRACQFLDAL--- 593

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                     L     ++  +    +    N     R H   +Q +       + DP+  
Sbjct: 594 ----------LMHREKNKLKQIVQTLIDATNR-HDGRIHTTFEQTVAATGRLSSVDPNLQ 642

Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            I         +RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G+D +  
Sbjct: 643 NIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFHKY 702

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             +  + +    +T DQR+  K M                    GL+    A  +K    
Sbjct: 703 VASLVYGIPVDDITSDQRSHVKAMSY--------------GLAYGLSTYGLAQQLKIKP- 747

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           E +K  +     +V E    L  +  + 
Sbjct: 748 -----------------------------KEAESLKNQYFATFGKVHEYLESLVSSARE- 777

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            +     I  +RR  P +                                    +  R+ 
Sbjct: 778 -KGYTETIFGRRRYFPGLKSPN--------------------------------RAVRDA 804

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                L   I Q  + DI+   M+ A  A      G  ++L +HDE+V E    +E  A+
Sbjct: 805 AERAALNAPI-QGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQAT 863

Query: 646 MLYH 649
            L  
Sbjct: 864 ALVK 867


>gi|332674238|gb|AEE71055.1| DNA-directed DNA polymerase I [Helicobacter pylori 83]
          Length = 893

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 98/643 (15%), Positives = 199/643 (30%), Gaps = 151/643 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112
           L+EAL +        N++F+          D+     + + + A+      +L+ +    
Sbjct: 371 LEEALFSPFSLEFLQNAFFKMLQHVQIIGHDLKP---LLSFLKAKYQ---VSLENIRIQD 424

Query: 113 GEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            + L       + G  E++  + K E       ++     +A +   E    ++   R +
Sbjct: 425 TQILAFLKNPEKVGFDEVLKEYLKEELILHEKIKDFKTKSKAEK--SEQLDRELNALRRL 482

Query: 172 FK----------RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +           L      E     +   +  +G+ +D      L Q    E   L+++
Sbjct: 483 CEYFEKGGLEEGLLALAREVETPFVKVLMDMEFQGFKIDAPYFKRLEQEFKNELHVLERQ 542

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  L  G   +    ++L   L+ +  L       T  + +L    K  P    +   R 
Sbjct: 543 ILELI-GTDFNLNSPKQLSEILYEKLELPKNKSHSTDEKSLLKILDK-HPSIALILEYR- 599

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++        L+   + D ++  T                                 Q
Sbjct: 600 ELNKLFNTYTTPLLRLKDKDDKIHTTFI-------------------------------Q 628

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
             T      +  P+   I         +R   IAS +   L+  D + IE R+LA  + +
Sbjct: 629 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 688

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF  G D+++ T    F      + K++R+I K +   L Y  G+   +K++ T 
Sbjct: 689 KDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETL 742

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            + LN                                              K        
Sbjct: 743 NIPLNEA--------------------------------------------KSYTEAYFK 758

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R   + + L++  E+ ++  KA     R  V       D               Y     
Sbjct: 759 RFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGVND---------------YIKGNY 803

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
            R  +N                   I Q  + D+L  GM+  ++         ++L VHD
Sbjct: 804 LREGVNA------------------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHD 845

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ E  + +          + ++  +   +PL+   + +KR+
Sbjct: 846 ELIFEIEEKNALELQQEIQRILNDEVYPLRVPLETSAFIAKRW 888


>gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
 gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
          Length = 885

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 139/395 (35%), Gaps = 45/395 (11%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E++L  +   +  +G  +D          +     ++++ +  L  G   +    ++L  
Sbjct: 487 EKKLVPVLADMEKKGILIDPDYFGKYGNELKNNLAEIEKNIYGLA-GEEFNINSPKQLSE 545

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF +  L     T+T     +   + L  Q ++V                         
Sbjct: 546 ILFEKMMLDPVKKTKTGYSTDVEVLEVLAAQGVEVAEK---------------------- 583

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360
                 L++ G ++         P        R H    Q  T      +S+P+   I  
Sbjct: 584 -----ILEYRGYTKLLTTYVEPLPKLADSEN-RIHTTFHQNGTATGRLSSSNPNIQNIPV 637

Query: 361 ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R   ++ EG   +  D + IE RVLA ++ ++  + A++  +DL+  T  + 
Sbjct: 638 KTDEGIKIRRGFVSEEGWSFISFDYSQIELRVLAELSEDETLILAYQKDKDLHDLTARKL 697

Query: 417 FNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F     + V++++R+I KV+  ++ Y         ++    + +      +  N   EE+
Sbjct: 698 FFKTDEEPVSREERSIAKVINFSILYGKTPF---GLSKELKIPMGDAKLYI--NKYFEEY 752

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                F   + +    +   +   GT     ++     +S    +  +  +    T+  G
Sbjct: 753 PRVRTFLNSVLQEAKLNGFVETLYGT-----RRYITGINSSNKNIEAQADRMAVNTVVQG 807

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            A    K   V L    KDK ++ ++L     L++
Sbjct: 808 TAANIIKIVMVKLYEEFKDKEDINMLLQVHDELIF 842



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 597 LTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHL 650
               +VQ  + +I+   M+        K   +++L VHDE++ E   ++ +     + ++
Sbjct: 800 AVNTVVQGTAANIIKIVMVKLYEEFKDKEDINMLLQVHDELIFEVKNESVDKYLKEIDNI 859

Query: 651 MTSNP 655
           M +  
Sbjct: 860 MENTI 864


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/486 (17%), Positives = 169/486 (34%), Gaps = 83/486 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           F D ET S +D              + L AF    + V     V    + + LK  L + 
Sbjct: 8   FFDTETDS-LDFRTG---------KIKLIAFSKGLNEV-----VTTTSVDERLKSILNDK 52

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEALKLSSQKM 123
           ++  V HN+ F+   +    +    ++ + CTL++A+  G    +LKA+ +  K     M
Sbjct: 53  NIIKVFHNAKFD---VGFFQSKGYRVNNYHCTLLMAQVLGEEKLSLKALAK--KYLDVDM 107

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179
           ++  +         +           H +       Y   DV  TR ++ +L  L     
Sbjct: 108 DKSMQ--------HSDNWQETEITQEHID-------YAVKDVEHTRALYYKLLDLLVENN 152

Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                 +E+        +   G  ++    +           +L+  ++ L      +  
Sbjct: 153 LLTVYERERRALPAIVMLESNGINMEFDKWNARLDDDRRLAVELEIRIKDLLNRKELNLN 212

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             ++L   +  E G+ L      T    L+           +   R   ++        L
Sbjct: 213 SPKQLVEAIV-EYGIKLHS----TSDDELAKYSDEHEVIKLIRKYRRLQAKIKTYG-EKL 266

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + +++DGR+R   + +G+                                      ++P
Sbjct: 267 KKFIDNDGRIRAHWRLIGSRS-------------------------------GRMSCNNP 295

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
            PLQ +    R   +A EG KL+ +D + IE RVLA ++ ++  +  F  G DL++ T +
Sbjct: 296 -PLQAMPGNSREFFVADEGYKLIGSDYSQIELRVLASISKDETLISYFNNGIDLHLGTAS 354

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F     +++K++R + K +   + Y   A   QK    +G++ +              
Sbjct: 355 LIFKKPIDEISKEERQVAKSLNFGIVYGITAYGIQKNLRKSGVDTSLEEAEKYRIEFLNV 414

Query: 475 WEDAEN 480
           +   + 
Sbjct: 415 YPKVKE 420



 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 585 RQLTREYTYGGKLT-----ENIVQAVSRDILAEGMMNA---TKAGYDIVLTVHDEIVCET 636
           + L      GG LT        +Q  + + L E +       K  + +V  +HDEI+ E 
Sbjct: 432 KTLGGRRWQGGSLTMTQRLNLPIQGSAAEGLKEALALLVERMKESWRLVAVIHDEILLEV 491

Query: 637 PDTDEFNAS-MLYHLM 651
           P+ +   A  +L   M
Sbjct: 492 PEDEAEEAKNILESCM 507


>gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
 gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
          Length = 383

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/493 (16%), Positives = 156/493 (31%), Gaps = 128/493 (25%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +  +G+ +DV     L Q    E   L++++  L  G+  +    ++L   L+ + GL  
Sbjct: 3   MEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLI-GVDFNLNSPKQLGEVLYEKLGLPK 61

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
                T  + +L    K  P    +   R   ++        L+   + D ++  T    
Sbjct: 62  NKSHSTDEKNLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFI-- 117

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRS 366
                                        Q  T      +  P+   I         +R 
Sbjct: 118 -----------------------------QTGTATGRLSSHSPNLQNIPVRSPKGLLIRK 148

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + 
Sbjct: 149 GFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLA 205

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           K++R+I K +   L Y  G+   +K++ T  + LN                         
Sbjct: 206 KEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEA----------------------- 239

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                K        R   + + L+   E+ ++  KA     R  
Sbjct: 240 ---------------------KSYIEAYFKRFPSIKDYLNGMKEEILKTSKAFTLLGRYR 278

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           V       D               Y      R  +N                   I Q  
Sbjct: 279 VFDFNGVND---------------YVKGNYLREGVNA------------------IFQGS 305

Query: 606 SRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
           + D+L  GM+  ++         ++L VHDE++ E  + +          + ++  +   
Sbjct: 306 ASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYPLR 365

Query: 661 LPLKAEGYESKRY 673
           +PL+   + +KR+
Sbjct: 366 VPLETSAFIAKRW 378


>gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E]
 gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I
 gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
 gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]
 gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
 gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
 gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22]
          Length = 867

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 141/438 (32%), Gaps = 48/438 (10%)

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              +  +  K        +    ++   +   G  VD    + L+     E  K+++E+ 
Sbjct: 451 QTLLELQKNKAFRLYREIDLPTCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIF 510

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRM 281
           +L+ G   +    ++L   LF +  L   +    T          KKL+     +    +
Sbjct: 511 ALS-GTKFNIGSQKQLGEILFKKMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLL 569

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           R                               ++         P Q      R H    Q
Sbjct: 570 RW---------------------------RQLTKLKNTYTDSLPKQINNITKRIHTTFLQ 602

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             T      + +P+   +       + +R   IA EG KL+ AD + IE R+L+ +A   
Sbjct: 603 TSTTTGRLSSQEPNLQNVPIRSSDGNKIREAFIAEEGYKLISADYSQIELRILSHIANID 662

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF   ED++  T  + FN+   ++T + R   K +   + Y   A     +A    
Sbjct: 663 VLKQAFINKEDIHTQTACQIFNLKKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLN 719

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++ +T +  +K   A  E++  + +    +     +     F G  C          H +
Sbjct: 720 VSNSTASEYIKQYFA--EYKGVQEYMTQTKACASRNGYVTNFFGRKC-----FIPLIHDK 772

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGN 575
             +L     +A       G      K   + L    +++     L+L     L++     
Sbjct: 773 --KLKQFAERAAINAPIQGTNADIIKIAMIKLDKEIEERKLKTRLILQIHDELLFEVPEI 830

Query: 576 NRSYLNTTTRQLTREYTY 593
               +    +++    T 
Sbjct: 831 EVEIVIPIIKKIMEHSTN 848


>gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7]
          Length = 833

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/673 (15%), Positives = 200/673 (29%), Gaps = 166/673 (24%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            ++  AF   D             +P  L+EAL +        N++ +          D+
Sbjct: 294 EMLALAFLLQD---------QGYFLP--LEEALFSPFSLEFLQNAFSQMLQHARIIGHDL 342

Query: 89  PIH---------------RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
                             R   T +LA     P  +    E LK   Q+     E I  F
Sbjct: 343 KPLLSFLKAKYQVSLENIRIQDTQILA-FLKNPEKVG-FDEVLKEYLQEDLILHEKIKDF 400

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--RLEPLSSKEQELWYLDQT 191
                 E L   N              C+      +   +   L      E     +   
Sbjct: 401 KTKNKAEQLERLNL-----ELNALKRLCEY---FEKGGLEENLLSLARGIEMPFMKVLIN 452

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +  +G+ +D      L Q    E   L++++  L  G   +    ++L   L+ +  L  
Sbjct: 453 MEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLI-GEDFNLNSPKQLGEVLYEKLNLPK 511

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
                T  + +L    K  P    +   R   ++ +      L+   + D ++  T    
Sbjct: 512 NKSHSTDEKSLLKIMDK-HPSISLILEYR-ELNKLSNTYTTPLLRLKDKDDKIHTTFI-- 567

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRS 366
                                        Q  T      +  P+   I         +R 
Sbjct: 568 -----------------------------QTGTATGRLSSHSPNLQNIPVRSSKGLLIRK 598

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             I+S +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + 
Sbjct: 599 GFISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLA 655

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           K++R+I K +   L Y  G+   +K++ T  + L+                         
Sbjct: 656 KEKRSIAKSINFGLVYGMGS---KKLSETLNIPLSEA----------------------- 689

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                K        R   + + L++  E+ ++  KA     R  
Sbjct: 690 ---------------------KSYIEAYFKRFPSIKDYLNRMREEILKTSKAFTLLGRYR 728

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           V       D               Y      R  +N                   I Q  
Sbjct: 729 VFDFNGVND---------------YVKGNYLREGVNA------------------IFQGS 755

Query: 606 SRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
           + D+L  GM+  ++         ++L VHDE++ E  + +          + ++  +A  
Sbjct: 756 ASDLLKLGMLKVSERFKNDSSVRLLLQVHDELIFEIEEKNALKLQQEIQGILNHEVYALR 815

Query: 661 LPLKAEGYESKRY 673
           +PL+   + +KR+
Sbjct: 816 VPLETSAFIAKRW 828


>gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri]
          Length = 869

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/485 (14%), Positives = 150/485 (30%), Gaps = 127/485 (26%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  + +    +   G  VD     T    ++    +L+ E+  +    + +    +++  
Sbjct: 476 ELPIAFALARMEINGVKVDQYELTTQTLRIEKIVQELNNEINDIAQKEI-NPNSPKQISE 534

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF    L  +    +T Q  L   K       ++ + R +  +     L  + + + +D
Sbjct: 535 LLFQNFSLP-DRKKGSTAQETLEEIKNNHVIIPKILDYR-KYQKLYSTYLKGMEKYIFAD 592

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359
           G++                                    Q +T+     + +P+   I  
Sbjct: 593 GKVHTI-------------------------------YKQTLTNTGRLSSVEPNMQNISI 621

Query: 360 ---ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
              I   VR   + S     L+  D + IE R+LA M+ +Q  + AF   ED++  T  +
Sbjct: 622 RDHIQKEVRKIFVVSSPDNILLSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMK 681

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            FN++  ++T + R   K +   + Y         +A+   +++                
Sbjct: 682 IFNLSKDEITPNIRRSAKAVNFGIIYGISDF---GLATDLNISVAKAKA----------- 727

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                         +   + Q+   +      + +  E   +NG
Sbjct: 728 ------------------------------IINNYYQQFPTIKAF---IDKQVEFCKQNG 754

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                  R+                         Y    N+R+Y+         +  +G 
Sbjct: 755 YVTTIFNRKR------------------------YVSEINDRNYM---------QREFGK 781

Query: 596 KLTENI-VQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
           ++  N+ +Q  + DI+   + N             I+  +HDE++ E P  +      + 
Sbjct: 782 RIAMNMPIQGSAADIIKIALKNIDQEFLKLNLKAKIIAQIHDELIFEIPQVELIQVQKIV 841

Query: 649 HLMTS 653
            ++  
Sbjct: 842 KILME 846


>gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908]
          Length = 889

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/505 (15%), Positives = 156/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 497 DIETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLI-GVDFNLNSPKQL 555

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ + GL       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 556 GEVLYEKLGLPKNKSHSTDEKNLLKILDK-HPSIPLILEYR-ELNKLFNTYTTPLLRLKD 613

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 614 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 642

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 643 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 702

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + L+             
Sbjct: 703 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLSIPLSEA----------- 745

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L+   E+ ++
Sbjct: 746 ---------------------------------KSYIEAYFKRFPSIKDYLNGMREEILK 772

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 773 TSKAFTLLGRYRVFDFNGVND---------------YVKGNYLREGVNA----------- 806

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 807 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEI 859

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + + R+
Sbjct: 860 QRILNDEVYPLRVPLETSAFVANRW 884


>gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018]
          Length = 889

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/505 (15%), Positives = 156/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 497 DIETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLI-GVDFNLNSPKQL 555

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ + GL       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 556 GEVLYEKLGLPKNKSHSTDEKNLLKILDK-HPSIPLILEYR-ELNKLFNTYTTPLLRLKD 613

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 614 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 642

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 643 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 702

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + L+             
Sbjct: 703 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLSIPLSEA----------- 745

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L+   E+ ++
Sbjct: 746 ---------------------------------KSYIEAYFKRFPSIKDYLNGMREEILK 772

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 773 TSKAFTLLGRYRVFDFNGVND---------------YVKGNYLREGVNA----------- 806

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 807 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEI 859

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + + R+
Sbjct: 860 QRILNDEVYPLRVPLETSAFVANRW 884


>gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017]
          Length = 889

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/505 (15%), Positives = 156/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 497 DIETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLI-GVDFNLNSPKQL 555

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ + GL       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 556 GEVLYEKLGLPKNKSHSTDEKNLLKILDK-HPSIPLILEYR-ELNKLFNTYTTPLLRLKD 613

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 614 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 642

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 643 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 702

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + L+             
Sbjct: 703 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLSIPLSEA----------- 745

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L+   E+ ++
Sbjct: 746 ---------------------------------KSYIEAYFKRFPSIKDYLNGMREEILK 772

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 773 TSKAFTLLGRYRVFDFNGVND---------------YVKGNYLREGVNA----------- 806

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 807 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEI 859

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + + R+
Sbjct: 860 QRILNDEVYPLRVPLETSAFVANRW 884


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/511 (16%), Positives = 164/511 (32%), Gaps = 87/511 (17%)

Query: 14   IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMP--------QVL 57
            +D+   G+        + L      + P  + D           D V+P        + L
Sbjct: 1224 VDIETTGLDH--NTNQIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVVPGRNELIKCEWL 1281

Query: 58   KEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K   ++ D   V HN  F+   L+   F  + PI     T+V ++             A 
Sbjct: 1282 KNLFKSKDTVKVFHNGKFDINFLRVYGFEFEGPIF---DTMVASKLL----------VAS 1328

Query: 117  KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR----EAWRLFGEYCKGD-------- 164
            +  S K+    E             + D+ +        + +     Y   D        
Sbjct: 1329 RYISCKLTHVSE--RYL------NIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLY 1380

Query: 165  VTVTREIF-KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V +   +    L  ++S E +       +   G  VD      L   +  E  ++  +L 
Sbjct: 1381 VILEHLLKINNLADIASVENKCILATSDMELNGIKVDEDKLRILQDELKQEHQEISNDLY 1440

Query: 224  SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            S       +    +++   L     L + D ++       S                   
Sbjct: 1441 SQLNHSEINLNSQKQVLEKLQE---LKIMDRSKKKIISDTSE------------------ 1479

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                   +  +   +     +    ++  A++         P    P   R +   +Q+ 
Sbjct: 1480 ----STLIRNMSNPI-----ISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLG 1530

Query: 344  THLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                      P+  Q+  D   R C +A +G K V+AD + IE R+ A +A +   ++A+
Sbjct: 1531 AESGRFSCDGPNLQQVPRDKKFRECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQAY 1590

Query: 403  ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +   DL+  T +   N +  +V K++R + K +   L +        +M + TG NL   
Sbjct: 1591 QQNVDLHSLTASILKNKSINEVNKEERQLAKAVNFGLIFGMSINGL-RMYAETGYNLKLT 1649

Query: 463  AHLVK--TNSAPEEWEDAENFCRWMQENHPE 491
                K    S    ++   N+   ++ + P 
Sbjct: 1650 QTEAKEIYTSFFNNFKGILNWHNSVKNSRPT 1680


>gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d]
          Length = 827

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/505 (15%), Positives = 154/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 435 EVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLI-GVDFNLNSPKQL 493

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ +  L       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 494 SEILYEKLELPQNKSRSTDEKSLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 551

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 552 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 580

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  + AF  G D+++ T 
Sbjct: 581 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETS 640

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + LN             
Sbjct: 641 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEA----------- 683

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 684 ---------------------------------KSYIEAYFKRFPSIKDYLNRMKEEILK 710

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D+              Y   G                   
Sbjct: 711 TSKAFTLLGRYRVFDFTGANDRI----------KGDYLREG------------------- 741

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 742 ----VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEI 797

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + +N  +   +PL+   + + R+
Sbjct: 798 QRILNNEVYPLRVPLETSAFVANRW 822


>gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7]
          Length = 885

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/505 (15%), Positives = 159/505 (31%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 493 EVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKDELKVLERQILELI-GVDFNLNSPKQL 551

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ +  L       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 552 SEVLYEKLELPKNKSHSTDEKSLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 609

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 610 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 638

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 639 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 698

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F     ++ K++R+I K +   L Y  G+   +K++ T  + LN     ++      
Sbjct: 699 KALFG---GELAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEAKSYIE------ 746

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                                     R   + + L++  E+ ++
Sbjct: 747 --------------------------------------AYFKRFPSIKDYLNRMKEEILK 768

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 769 TSKAFTLLGRYRVFDFTGAND---------------YVKGNYLREGVNA----------- 802

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 803 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEI 855

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + +KR+
Sbjct: 856 QRILNDEVYPLRVPLETSAFMAKRW 880


>gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51]
          Length = 885

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 98/643 (15%), Positives = 200/643 (31%), Gaps = 151/643 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112
           L+EAL +        N++F+          D+     + + + A+      +L+ +    
Sbjct: 363 LEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP---LLSFLKAKYQ---VSLENIRIQD 416

Query: 113 GEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            + L       + G  E++  + K E       ++     +A +L  E    ++   R +
Sbjct: 417 TQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKAGKL--EQLDRELNALRRL 474

Query: 172 FK----------RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +           L      E     +   +  +G+ +D      L Q    E   L+++
Sbjct: 475 CEYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQ 534

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  L  G   +    ++L   L+ +  L       T  + +L    K  P    +   R 
Sbjct: 535 ILELI-GADFNLNSPKQLSEILYEKLELPKNKSHSTDEKSLLKILDK-HPSIALILEYR- 591

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++        L+   + D ++  T                                 Q
Sbjct: 592 ELNKLFNTYTTPLLRLKDKDDKIHTTFI-------------------------------Q 620

Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
             T      +  P+   I         +R   IAS +   L+  D + IE R+LA  + +
Sbjct: 621 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 680

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF  G D+++ T    F      + K++R+I K +   L Y  G+   +K++ T 
Sbjct: 681 KDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETL 734

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            + L+                                              K        
Sbjct: 735 NIPLSEA--------------------------------------------KSYIEAYFK 750

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R   + + L++  E+ ++  KA     R  V       D               Y     
Sbjct: 751 RFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGAND---------------YIKGNY 795

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
            R  +N                   I Q  + D+L  GM+  ++         ++L VHD
Sbjct: 796 LREGVNA------------------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHD 837

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ E  + +          + ++  +   +PL+   + +KR+
Sbjct: 838 ELIFEIEEKNAPELQQEIQRILNDEVYPLRVPLETSAFIAKRW 880


>gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12]
 gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12]
          Length = 903

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 156/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L+ ++  L  G+  +    ++L
Sbjct: 511 EIETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNILECQILDLI-GVDFNLNSPKQL 569

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ + GL       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 570 GEILYEKLGLPKNKSHSTDEKNLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 627

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 628 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 656

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 657 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 716

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F    A   K++R+I K +   L Y  G+   +K++ T  + L+             
Sbjct: 717 KALFGGDLA---KEKRSIAKSINFGLVYGMGS---KKLSETLNIPLSEA----------- 759

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 760 ---------------------------------KSYIEAYFKRFPSIKDYLNRMKEEILK 786

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 787 TSKAFTLLGRYRVFDFNGVND---------------YIKGNYLREGVNA----------- 820

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 821 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEI 873

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + + R+
Sbjct: 874 QRILNDEVYPLRVPLETSAFVANRW 898


>gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16]
          Length = 893

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 156/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 501 EVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELI-GVDFNLNSPKQL 559

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ +  L       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 560 SEILYEKLELPKNKSHSTDEKSLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 617

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 618 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 646

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  + AF  G D+++ T 
Sbjct: 647 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETS 706

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + LN             
Sbjct: 707 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEA----------- 749

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 750 ---------------------------------KSYTEAYFKRFPSIKDYLNRMKEEILK 776

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 777 TSKAFTLLGRYRVFDFTGVND---------------YIKGNYLREGVNA----------- 810

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 811 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEI 863

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + +KR+
Sbjct: 864 QRILNDEVYPLRVPLETSAFIAKRW 888


>gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30]
          Length = 893

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 156/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 501 EVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELI-GVDFNLNSPKQL 559

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ +  L       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 560 SEILYEKLELPKNKSHSTDEKNLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 617

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 618 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 646

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  + AF  G D+++ T 
Sbjct: 647 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETS 706

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + LN             
Sbjct: 707 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEA----------- 749

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 750 ---------------------------------KSYTEAYFKRFPSIKDYLNRMKEEILK 776

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 777 TSKAFTLLGRYRVFDFTGAND---------------YIKGNYLREGVNA----------- 810

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 811 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEI 863

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + +KR+
Sbjct: 864 QRILNDEVYPLRVPLETSAFIAKRW 888


>gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
 gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
          Length = 891

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 155/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G   +    ++L
Sbjct: 499 EVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELI-GADFNLNSPKQL 557

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ +  L       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 558 SEILYEKLELPQNKSRSTDEKSLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 615

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 616 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 644

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  + AF  G D+++ T 
Sbjct: 645 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETS 704

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + LN             
Sbjct: 705 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEA----------- 747

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 748 ---------------------------------KSYIEAYFKRFPSIKDYLNRMKEEILK 774

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 775 TSKAFTLLGRYRVFDFTGAND---------------YIKGNYLREGVNA----------- 808

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 809 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEI 861

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + +KR+
Sbjct: 862 QRILNDEVYPLRVPLETSAFIAKRW 886


>gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A]
          Length = 893

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 104/646 (16%), Positives = 200/646 (30%), Gaps = 157/646 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVGEA 115
           L+EAL +        N++F+          D+     + + + A+    +        + 
Sbjct: 371 LEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKP---LLSFLKAKYQVSVEDIRIQDTQI 427

Query: 116 LKLSSQKMEEG-KELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           L       + G  E++ ++ K E   HE + D    N  E   L          V     
Sbjct: 428 LAFLKNPEKVGFDEVLKQYLKEEWIPHEKIKDFKTKNKAEKLELLS--------VELNAL 479

Query: 173 KRLEPLSSK--------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           KRL     K              E     +   +  +G+ +D      L Q    E   L
Sbjct: 480 KRLCEYFEKGGLEEGLLALAREVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVL 539

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           ++++  L  G+  +    ++L   L+ +  L       T  + +L    K  P    +  
Sbjct: 540 ERQILELI-GVDFNLNSPKQLSEILYEKLELPKNKSHSTDEKSLLKILDK-HPSIALILE 597

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++        L+   + D ++  T                               
Sbjct: 598 YR-ELNKLFNTYTTPLLRLKDKDDKIHTTFI----------------------------- 627

Query: 339 LDQIITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392
             Q  T      +  P+   I         +R   I+S +   L+  D + IE R+LA  
Sbjct: 628 --QTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFISSSKEYCLLGVDYSQIELRLLAHF 685

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  + AF  G D+++ T    F      + K++R+I K +   L Y  G+   +K++
Sbjct: 686 SQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLS 739

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            T  + LN                                              K     
Sbjct: 740 ETLNIPLNEA--------------------------------------------KSYIEA 755

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R   + + L++  E+ ++  KA                           GR  V+  
Sbjct: 756 YFKRFPSIKDYLNRMKEEILKTSKAFTLL-----------------------GRYRVFDF 792

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLT 627
           VG N        R+              I Q  + D+L  GM+  ++         ++L 
Sbjct: 793 VGVNDHIKGNYLREG----------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQ 842

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE++ E  + +          + ++  +   +PL+   + +KR+
Sbjct: 843 VHDELIFEIEEKNALELQREIQRILNDEVYPLRVPLETSAFIAKRW 888


>gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
 gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
          Length = 889

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 157/505 (31%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 497 EIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLI-GVDFNLNSPKQL 555

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ +  L       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 556 SEVLYEKLELPKNKSHSTDEKNLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 613

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 614 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 642

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 643 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 702

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F    A   K++R+I K +   L Y  G+   +K++ T  ++LN             
Sbjct: 703 KALFGGDLA---KEKRSIAKSINFGLVYGMGS---KKLSETLNISLNEA----------- 745

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 746 ---------------------------------KSYIEAYFKRFPSIKDYLNRMKEEILK 772

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D               Y      R  +N            
Sbjct: 773 TSKAFTLLGRYRVFDFNGVND---------------YIKGNYLREGVNA----------- 806

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 807 -------IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEI 859

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + + R+
Sbjct: 860 QRILNDEVYPLRVPLETSAFVANRW 884


>gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
 gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
          Length = 893

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 105/670 (15%), Positives = 204/670 (30%), Gaps = 162/670 (24%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           V+  AF F+D             +P  L+EAL +        N++F+          D+ 
Sbjct: 355 VLALAFLFED---------QGYFLP--LEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLK 403

Query: 90  IH---------------RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
                            R   T +LA     P  +   G   +   +++   ++ I  F 
Sbjct: 404 PLLSFLKAKYQVSLENIRIQDTQILA-FLKNPEKVGFDGVLKEYLKEELIPHEK-IKDFK 461

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                E L   +   +            G       + +        E     +   +  
Sbjct: 462 TKSKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR------EVETPFMKVLMGMEF 515

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
           +G+ +D      L Q    E   L++++  L  G+  +    ++L   L+ +  L     
Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILDLI-GVDFNLNSPKQLSEILYEKLELPQNKS 574

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
             T  + +L    K  P    +   R   ++        L+   + D ++  T       
Sbjct: 575 RSTDEKSLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFI----- 627

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVI 369
                                     Q  T      +  P+   I         +R   I
Sbjct: 628 --------------------------QTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFI 661

Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           AS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K++
Sbjct: 662 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEK 718

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R+I K +   L Y  G+   +K++ T  + LN                            
Sbjct: 719 RSIAKSINFGLVYGMGS---KKLSETLNIPLNEA-------------------------- 749

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                             K        R   + + L++  E+ ++  KA           
Sbjct: 750 ------------------KSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLL------- 784

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR  V+  VG N        R+              I Q  + D
Sbjct: 785 ----------------GRYRVFDFVGANDHIKGNYLREG----------VNAIFQGSASD 818

Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPL 663
           +L  GM+  ++         ++L VHDE++ E  + +          + ++  +   +PL
Sbjct: 819 LLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYPLRVPL 878

Query: 664 KAEGYESKRY 673
           +   + +KR+
Sbjct: 879 ETSAFVAKRW 888


>gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
 gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
          Length = 848

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 84/523 (16%), Positives = 151/523 (28%), Gaps = 133/523 (25%)

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             D+    E +   + + + +  L      +   G  +D          ++    ++  E
Sbjct: 431 AEDLNEKIESYGMTDLMKTVDLPLLPALVRMEQAGVHLDGPAMVAFTAQLEASLDRVSGE 490

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT-ETTCQRVLSSNK-------KLTPQA 273
           + +   G + +    +++   LF + GL +   T +      +S  +        + P  
Sbjct: 491 ILTYAGGPI-NLNSPKQVGELLFEKLGLPVIKRTAQKGYSTDVSVLETLCRSVGDICPVP 549

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R  +   +   +   + A + DG +  T +                        
Sbjct: 550 ALLLEHRELSKMLSGFAVP--LAAASRDGVVHSTFEAQT--------------------- 586

Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388
                     T      + DP+   +     +   +  C+ A  G   V AD + IE RV
Sbjct: 587 ----------TGTGRLSSRDPNLQNLPNYSELGGQLCRCLTAGPGGVFVAADYSQIELRV 636

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++GE+   + FE G D++  T A    +    VTK+QR + K +   L Y       
Sbjct: 637 LAHLSGERRLREIFEAGRDIHTETAAMILGIPADSVTKEQRRMAKTVTFGLLYG-----M 691

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   L++                                               + 
Sbjct: 692 SAFGLADRLSVGQAEA------------------------------------------RG 709

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                 + +  +   +     +    G +  A  R                      R L
Sbjct: 710 IMDAYFAALPGVREYVDATVAEARRRGYSQTAYGR---------------------IRPL 748

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI 624
                G        T R   R          + VQ  + DI    M+   +    AG  +
Sbjct: 749 DEVATGR------QTDRGHARRVA-----INSPVQGTAADITKMAMITVDRELAAAGVPM 797

Query: 625 VLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           VL VHD IVC  TP+  E     L   MT        +PL  E
Sbjct: 798 VLQVHDSIVCRTTPENAEPVGKKLAEFMTGAVK--LSVPLAVE 838


>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705]
 gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705]
          Length = 955

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 63/433 (14%), Positives = 135/433 (31%), Gaps = 53/433 (12%)

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEY 160
             LP     +   L       +  K+    F        E           +        
Sbjct: 457 LDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNE 516

Query: 161 CK-GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQ 209
            +  D+ + R +   L P+  + ++ W +             +   G  VD     ++  
Sbjct: 517 LRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRD 576

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKK 268
               E  +  +       G+  + +  ++L+  LF + GL     T++       ++ + 
Sbjct: 577 QFAAEARQAQEMAWEYA-GIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQD 635

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           L                         V+   ++G L   L+    ++  +    +    N
Sbjct: 636 L---------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN 674

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLA 382
                R H   +Q +       + DP+   I         +R   +  EG + L+  D +
Sbjct: 675 -TSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYS 733

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y 
Sbjct: 734 QVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYG 793

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                  +             +          + D         E+   +A E  +  T 
Sbjct: 794 LSTYGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETI 844

Query: 503 CERVKKAWRQKHS 515
             R ++ +   HS
Sbjct: 845 FGR-RRYFPALHS 856



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 933

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 934 VDLA--VPLDV 942


>gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 950

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 63/433 (14%), Positives = 135/433 (31%), Gaps = 53/433 (12%)

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEY 160
             LP     +   L       +  K+    F        E           +        
Sbjct: 452 LDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNE 511

Query: 161 CK-GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQ 209
            +  D+ + R +   L P+  + ++ W +             +   G  VD     ++  
Sbjct: 512 LRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRD 571

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKK 268
               E  +  +       G+  + +  ++L+  LF + GL     T++       ++ + 
Sbjct: 572 QFAAEARQAQEMAWEYA-GIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQD 630

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           L                         V+   ++G L   L+    ++  +    +    N
Sbjct: 631 L---------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN 669

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLA 382
                R H   +Q +       + DP+   I         +R   +  EG + L+  D +
Sbjct: 670 -TSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYS 728

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y 
Sbjct: 729 QVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYG 788

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                  +             +          + D         E+   +A E  +  T 
Sbjct: 789 LSTYGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETI 839

Query: 503 CERVKKAWRQKHS 515
             R ++ +   HS
Sbjct: 840 FGR-RRYFPALHS 851



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 928

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 929 VDLA--VPLDV 937


>gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
 gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
          Length = 960

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 82/498 (16%), Positives = 152/498 (30%), Gaps = 118/498 (23%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  +  +   +   G  VD     +L      E  ++++       G   +    +K+  
Sbjct: 554 ELPVSVVLYRMEQEGAAVDRMRLDSLLATFAEESGRMERMAWD-AAGSEFNLSSPKKIGK 612

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF + GL     T++                     +    + +         E   + 
Sbjct: 613 VLFEDMGLTPLRKTKSG--------------------HYTTNAATLTTLYANAEEGSAAY 652

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-SRSHEELDQIITHLPTSITSDPDPLQII 360
             L   L+  G ++  +    +    N  R     H   +Q +       ++DP+   I 
Sbjct: 653 VFLGAILRHRGVNKLQQIVQTLIDAIN--RTDGHIHTTFEQTVAATGRLSSTDPNLQNIP 710

Query: 361 -----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    RS  I +EG   L+ AD + +E R++A  +G++  + AF++G D +    +
Sbjct: 711 NRNAEGRDTRSAFIPAEGFDALLSADYSQVELRLMADFSGDEALIDAFKSGADFHRYVAS 770

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             + +    ++ DQR+  K M   L Y   +    +     G+                 
Sbjct: 771 LVYGIPVDDISGDQRSHVKAMSYGLAYGLSSYGLSQ---QLGITPKEA------------ 815

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                        + +K+ + +   +V E    L        E 
Sbjct: 816 -----------------------------DALKQQYFRTFGKVHE---YLESLVATARER 843

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G       RR                  P+ RS                  ++ RE    
Sbjct: 844 GYTETMFGRRRY---------------FPALRSPN----------------RMVREAAER 872

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCE-TPDTDEFNASML 647
             L   I Q  + DI+   M+ A +A         IVL +HDE+V +  P   E   +++
Sbjct: 873 AALNAPI-QGSAADIMKMAMIRAERALRSQGMRSRIVLQIHDELVVQLAPGEHESATALV 931

Query: 648 YHLMTSNPSWAKGLPLKA 665
              M      A  +PL  
Sbjct: 932 KDAMEHAVQLA--VPLDV 947


>gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 955

 Score =  189 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 124/370 (33%), Gaps = 50/370 (13%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVD 212
            D+ + R +   L P+  + ++ W +             +   G  VD     ++     
Sbjct: 520 RDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFA 579

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTP 271
            E  +  +       G   + +  ++L+  LF + GL     T++       ++ + L  
Sbjct: 580 AEARQAQEMAWEYA-GTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDL-- 636

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                  V+   ++G L   L+    ++  +    +    N   
Sbjct: 637 -------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN-TS 676

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIE 385
             R H   +Q +       + DP+   I         +R   +  EG + L+  D + +E
Sbjct: 677 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 736

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y    
Sbjct: 737 LRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 796

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +             +          + D         E+   +A E  +  T   R
Sbjct: 797 YGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETIFGR 847

Query: 506 VKKAWRQKHS 515
            ++ +   HS
Sbjct: 848 -RRYFPALHS 856



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 933

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 934 VDLA--VPLDV 942


>gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 950

 Score =  189 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 124/370 (33%), Gaps = 50/370 (13%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVD 212
            D+ + R +   L P+  + ++ W +             +   G  VD     ++     
Sbjct: 515 RDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFA 574

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTP 271
            E  +  +       G   + +  ++L+  LF + GL     T++       ++ + L  
Sbjct: 575 AEARQAQEMAWEYA-GTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDL-- 631

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                  V+   ++G L   L+    ++  +    +    N   
Sbjct: 632 -------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN-TS 671

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIE 385
             R H   +Q +       + DP+   I         +R   +  EG + L+  D + +E
Sbjct: 672 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 731

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y    
Sbjct: 732 LRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 791

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +             +          + D         E+   +A E  +  T   R
Sbjct: 792 YGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETIFGR 842

Query: 506 VKKAWRQKHS 515
            ++ +   HS
Sbjct: 843 -RRYFPALHS 851



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 928

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 929 VDLA--VPLDV 937


>gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
 gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
          Length = 955

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 124/370 (33%), Gaps = 50/370 (13%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVD 212
            D+ + R +   L P+  + ++ W +             +   G  VD     ++     
Sbjct: 520 RDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFA 579

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTP 271
            E  +  +       G   + +  ++L+  LF + GL     T++       ++ + L  
Sbjct: 580 AEARQAQEMAWEYA-GTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDL-- 636

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                  V+   ++G L   L+    ++  +    +    N   
Sbjct: 637 -------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN-TS 676

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIE 385
             R H   +Q +       + DP+   I         +R   +  EG + L+  D + +E
Sbjct: 677 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 736

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y    
Sbjct: 737 LRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 796

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +             +          + D         E+   +A E  +  T   R
Sbjct: 797 YGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETIFGR 847

Query: 506 VKKAWRQKHS 515
            ++ +   HS
Sbjct: 848 -RRYFPALHS 856



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +   +      I+L +HDE+V E    +    + L    M   
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSCIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 933

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 934 VDLA--VPLDV 942


>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 858

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 121/384 (31%), Gaps = 47/384 (12%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           K L      ++ L  +   +   G  +++     L+         L+ E+ +L  G   +
Sbjct: 438 KLLTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLA-GERFN 496

Query: 233 SRCLEKLKTWLFLETGL--HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
               ++L   LF + GL    +     +        + L  + +++ +            
Sbjct: 497 IASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASK----------- 545

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                            L +   S+           Q  P   R H       T      
Sbjct: 546 ----------------ILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLS 589

Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +S+P+   I       + +R   IA +G K++ AD + IE R+LA +A      +AF  G
Sbjct: 590 SSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANG 649

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +D++  T  + F V   ++ +  R   K +   + Y         +A   G+ +   A  
Sbjct: 650 QDIHEITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPF---GLAKRLGITIAEAAEY 704

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +  N     + + + +          H   +   G  C    +        + +      
Sbjct: 705 I--NYYFSCYPEIKAYMEKAVSIARLHGYVETLFGRRC--FVRDINNTIPYIRQF---AE 757

Query: 526 QAFEQTIENGKAIIARKRRDVPLV 549
           +A       G A    KR  + L 
Sbjct: 758 RAAINAPLQGTAADIIKRATIQLF 781


>gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24]
          Length = 905

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 147/421 (34%), Gaps = 56/421 (13%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 513 DIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLI-GVDFNLNSPKQL 571

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ + GL       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 572 GEVLYEKLGLPKNKSHSTDEKNLLKILDK-HPSIPLILEYR-ELNKLFNTYTTPLLRLKD 629

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 630 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 658

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T 
Sbjct: 659 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETS 718

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F     ++ K++R+I K +   L Y  G+   +K++ T  + LN     ++     +
Sbjct: 719 KALFG---EELAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLNEAKSYIEA--YFK 770

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA-WRQKHSRVSELWNELHQAFEQTI 532
            +   +++   M+E      ++     T   R +   +   +  +    N L +     I
Sbjct: 771 RFPSIKDYLNGMREEI----LKTSKAFTLLGRYRVFDFNGVNDYIKG--NYLREGV-NAI 823

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
             G A    K   + +    K+  ++ L+L     L++     N   L    +++  +  
Sbjct: 824 FQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV 883

Query: 593 Y 593
           Y
Sbjct: 884 Y 884


>gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
 gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
          Length = 880

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/501 (16%), Positives = 159/501 (31%), Gaps = 129/501 (25%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L Y    + + G  VD          +  + +KL+  +     G   +    ++L  
Sbjct: 484 ELPLIYSLARMENTGVRVDEKRLKDYADTLLEKISKLEASIIDKA-GESFNINSPKQLGE 542

Query: 242 WLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L     T+T   T   VL            +   R     ++      L   +
Sbjct: 543 ILFGKLKLSGGKKTKTGYSTAADVLEKLAPEHEIIRDILEYRQLTKLNSTYA-TGLAGYI 601

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DGR+                               H   +Q IT      ++DP+   
Sbjct: 602 RDDGRI-------------------------------HGSFNQTITATGRISSTDPNLQN 630

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           I         +R   +   G   V AD + IE RVLA M+G++  ++++ T  D++  T 
Sbjct: 631 IPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRVLASMSGDEKLIESYHTAADIHAATA 690

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A+ F+V   +VT + R   K +                    G++    +  +  +   E
Sbjct: 691 AQVFHVPLDKVTPELRRNAKAVN--------------FGVVYGISAFGLSEDLSISR-KE 735

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             +   N+ +                    E VK+   +      ++ +   + + +T  
Sbjct: 736 ALDYINNYFKIY------------------EGVKRFLDK------QVADAKEKGYVKT-- 769

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                +  + R +P +   K  N +                 +R  +N+           
Sbjct: 770 -----MFGRIRPIPEI---KSSNFMTRSF------------GDRVAMNSP---------- 799

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + DI+   M+   +A        +IVL +HDE++ E    + +    +
Sbjct: 800 --------IQGSAADIMKIAMIRVDEALNKSGFDANIVLQIHDELLVEVRKDEVYKVKEI 851

Query: 648 YHL-MTSNPSWAKGLPLKAEG 667
               M    S    +PL+ + 
Sbjct: 852 VERSMREAVS--LKVPLEVDA 870


>gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 955

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/433 (14%), Positives = 134/433 (30%), Gaps = 53/433 (12%)

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEY 160
             LP     +   L       +  K+    F        E           +        
Sbjct: 457 MDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNE 516

Query: 161 CK-GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQ 209
            +  D+ + R +   L P+  + ++ W +             +   G  VD     ++  
Sbjct: 517 LRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRD 576

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKK 268
               E  +  +       G   + +  ++L+  LF + GL     T++       ++ + 
Sbjct: 577 QFAAEARQAQEMAWEYA-GTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQD 635

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           L                         V+   ++G L   L+    ++  +    +    N
Sbjct: 636 L---------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN 674

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLA 382
                R H   +Q +       + DP+   I         +R   +  EG + L+  D +
Sbjct: 675 -TSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYS 733

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y 
Sbjct: 734 QVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYG 793

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                  +             +          + D         E+   +A E  +  T 
Sbjct: 794 LSTYGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETI 844

Query: 503 CERVKKAWRQKHS 515
             R ++ +   HS
Sbjct: 845 FGR-RRYFPALHS 856



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 933

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 934 VDLA--VPLDV 942


>gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 911

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/606 (15%), Positives = 182/606 (30%), Gaps = 131/606 (21%)

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L N ++    ++      +LK     ++    +    ++A  +   + +  +   +KL
Sbjct: 382 EFLNNPNLKKYTYDIKKTTYLLKNH-KYNVLASNFDFDFMVACYSLNANVVSDLSSQIKL 440

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
               + E + +   F KG       D +  +   + + +      D  + +        L
Sbjct: 441 -VDNLVELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDL 499

Query: 179 -SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS---R 234
               +  L  +   I  +G  +D        Q +  +   ++ +++ L    + ++    
Sbjct: 500 YLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNNFNFS 559

Query: 235 CLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             ++++  LF +  L L +L + TT + VL       P    +  +R + ++     L  
Sbjct: 560 SPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITYHPIINLLLEHR-KYTKLYTTYLKG 616

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
             + +  D ++                                      +T+     +S 
Sbjct: 617 FEKFIFDDNKVHTIFNH-------------------------------TLTNTGRLSSSY 645

Query: 354 PDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           P+   I         VR   I +  K  +  D + IE RVLA M+ E   + AF    D+
Sbjct: 646 PNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADI 705

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           ++      FN++  Q+T +QR I KV    + Y         +AS   ++          
Sbjct: 706 HLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDF---GLASDLNIS---------- 752

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                               + K+  +  +S    L +   +  
Sbjct: 753 ----------------------------------VNQAKQMIKDYYSAFPSLLDFKEKQV 778

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           E     G       RR                              N  +  N   RQ  
Sbjct: 779 EIATSQGYITTLSNRRRY---------------------------INELNSTNHNIRQFG 811

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642
           +            +Q  + DIL   M++  K          IV  +HDEI+ E  D    
Sbjct: 812 KRIA-----VNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLE 866

Query: 643 NASMLY 648
               + 
Sbjct: 867 QTKKIV 872


>gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 911

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/606 (15%), Positives = 182/606 (30%), Gaps = 131/606 (21%)

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L N+++    ++      +LK     ++    +    ++A  +   + +  +   +KL
Sbjct: 382 EFLNNSNLKKYTYDIKKTTYLLKNH-KYNVLASNFDFDFMVACYSLNANVVSDLSNQIKL 440

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
               + E + +   F KG       D +  +   + + +      D  + +        L
Sbjct: 441 -VDNLIELETIDQIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDL 499

Query: 179 -SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS---R 234
               +  L  +   I  +G  +D        Q +  +   ++ +++ L    + ++    
Sbjct: 500 YLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNNFNFS 559

Query: 235 CLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             ++++  LF +  L L +L + TT + VL       P    +  +R + ++     L  
Sbjct: 560 SPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITYHPIINLLLEHR-KYTKLYTTYLKG 616

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
             + +  D ++                                      +T+     +S 
Sbjct: 617 FEKFIFDDSKVHTIFNH-------------------------------TLTNTGRLSSSY 645

Query: 354 PDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           P+   I         VR   I +  K  +  D + IE RVLA M+ E   + AF    D+
Sbjct: 646 PNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADI 705

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           ++      FN++  Q+T +QR I KV    + Y         +AS   ++          
Sbjct: 706 HLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDF---GLASDLNIS---------- 752

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                               + K+  +  +S    L     +  
Sbjct: 753 ----------------------------------VNQAKQMIKDYYSAFPSLLEFKEKQV 778

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           E     G       RR                              N  +  N   RQ  
Sbjct: 779 EIATSQGYITTLSNRRRY---------------------------INELNSTNHNIRQFG 811

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642
           +            +Q  + DIL   M++  K          IV  +HDEI+ E  D    
Sbjct: 812 KRIA-----VNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLE 866

Query: 643 NASMLY 648
               + 
Sbjct: 867 QTKRIV 872


>gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52]
          Length = 889

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/505 (15%), Positives = 154/505 (30%), Gaps = 128/505 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     +   +  +G+ +D      L Q    E   L++++  L  G+  +    ++L
Sbjct: 497 EVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKHELHVLERQILDLI-GVDFNLNSPKQL 555

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ +  L       T  + +L    K  P    +   R   ++        L+   +
Sbjct: 556 SEILYEKLELPKNKSHSTDEKSLLKILDK-HPSIALILEYR-ELNKLFNTYTTPLLRLKD 613

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D ++  T                                 Q  T      +  P+   I
Sbjct: 614 KDDKIHTTFI-------------------------------QTGTATGRLSSHSPNLQNI 642

Query: 360 ISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   IAS +   L+  D + IE R+LA  + ++  + AF  G D+++ T 
Sbjct: 643 PVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETS 702

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F      + K++R+I K +   L Y  G+   +K++ T  + L+             
Sbjct: 703 KALFG---EDLAKEKRSIAKSINFGLVYGMGS---KKLSETLNIPLSEA----------- 745

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                            K        R   + + L++  E+ ++
Sbjct: 746 ---------------------------------KSYIEAYFKRFPSIKDYLNRMKEEILK 772

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             KA     R  V       D                  +  N                 
Sbjct: 773 TSKAFTLLGRYRVFDFTGVNDH-----------------IKGNYLREG------------ 803

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  I Q  + D+L  GM+  ++         ++L VHDE++ E  + +        
Sbjct: 804 ----VNAIFQGSASDLLKLGMLKVSERFKNNPLVRLLLQVHDELIFEIEEKNAPELQQEI 859

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             + ++  +   +PL+   + +KR+
Sbjct: 860 QRILNDEVYPLRVPLETSAFMAKRW 884


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 83/529 (15%), Positives = 168/529 (31%), Gaps = 110/529 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA 60
           + LF+D ET S                 + L   G ++  V + D           LK+ 
Sbjct: 23  SYLFLDTETVSE---------------KIRLVQLG-NNEDVFIVDLFETGSYGVDFLKDL 66

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKL 118
           L +  +  V HN  ++   L       I  +    T++ ++  G     +L+ V     L
Sbjct: 67  LVDKGI--VGHNLKYDLKFLYRY---GIEPYAVFDTMIASQLLGELDRHSLQKVA-MHYL 120

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175
                +  +                           +   EY   DV + R+++  L   
Sbjct: 121 GEVLDKSLQ----------MSNWGR-------AVLSKEQLEYAALDVKMVRDLYSILLDK 163

Query: 176 -----------------------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                                   P++  E         +   G  VD+     L  ++ 
Sbjct: 164 LNSTAHQEETLLKTRTSRVFGLKNPVAIIEMAFVQEVAKLELNGIGVDI---KELEDLIR 220

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269
             +  L++++              ++L   L    GL L    +   +T  ++LS     
Sbjct: 221 EYKKNLNKKVMEFMMHYRIDPLSPKQLGELLSKRLGLDLPKTEKGNISTDDKILSQFIHH 280

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    +   RM              + ++    +R  +                     
Sbjct: 281 KP-VQMILEIRM------------TKKLLDKLDEIRSFV--------------------- 306

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            +    + E  QI        + +P+ +Q I   +R    A EGK LV++D + IE R+ 
Sbjct: 307 -KDGSVYPEFKQIGAITGRMSSLNPN-VQNIPRDLRGVFKAREGKVLVISDFSQIELRIA 364

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           +   G++  +KAF  G+DL+  T +         ++K++R + K +   L Y   A+   
Sbjct: 365 SEYVGDERMIKAFREGKDLHRYTASVLLGKKEEDISKEERQLAKAVNFGLIYGISARGLS 424

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
             A + G++L+        +   E +   + +   ++    +      +
Sbjct: 425 DYAKSYGIDLSVDDAQKIRDRFFEYFRSFKEWHERVKRELKQLGGSRGY 473



 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G  +     + +   + +  ++         R L    +G +R Y  T   +    
Sbjct: 427 AKSYGIDLSVDDAQKIRDRFFEYFRSFKEWHERVKRELK--QLGGSRGY--TLLGRSYVA 482

Query: 591 YTYGGKLTENIVQAVSRDILAEG--MMNATKAGYDIVLTV----HDEIVCETP-DTDEFN 643
           +T+        +Q    D+L     M +A      I   V    HDEIV E   +  +  
Sbjct: 483 HTF-PDAVNYPIQGTGADLLKLSVLMFDAEIKREKIEAHVVNLVHDEIVVECQMEKAQLV 541

Query: 644 ASMLYHLM 651
             +L   M
Sbjct: 542 RDLLERAM 549


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 115/665 (17%), Positives = 205/665 (30%), Gaps = 160/665 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHN 72
           D    G+  Y +   + L  F    +P E W        V       AL+      V HN
Sbjct: 41  DTETTGLNIYQDAFGIRLIQF---GNPWESWVLPVERGGVFVGAAVTALQKVQ-RFVIHN 96

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSS--------QK 122
           + F+  V++    + +    W         + L  P A K  G   KL            
Sbjct: 97  AAFDLQVIERMLGVPME-QMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPVT 155

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
            EE K  +AR  K             +  +    +  Y   D  +   +  ++ PL  + 
Sbjct: 156 AEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILVSRLLGKVAPLVPES 213

Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E +L  +   +   G+ +DV  +  L+    + +++    +    YG V S  
Sbjct: 214 SHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSA-DMLRKSEHYTAVARYAYG-VDSVN 271

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             EKL   L   TG+ ++  T T  ++V +   +   +           ++       T 
Sbjct: 272 STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEKTW 330

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                    +R  ++   A                    R H  ++ +        T++P
Sbjct: 331 ---------VRNFIERRDA------------------NDRVHPGINPLQARTARMSTNNP 363

Query: 355 DPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
               + +    VR C +A  G+ +V  D    E RVLA +A ++  ++AF+   DL+  T
Sbjct: 364 SAQNLPAGDWMVRRCFLADSGQLMVSVDYQAQELRVLAALANDRTMIQAFKDNADLHQIT 423

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
                       +   R +GK++                                     
Sbjct: 424 A---------DASGVDRKVGKMV------------------------------------- 437

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                  NF           A +        +RV   + Q +  V+ L   L +      
Sbjct: 438 -------NFAYVFGSGPSTIAAQAGITFPEAKRVIAGFEQSYPEVTALSKSLQREA---- 486

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                  N   ++ P+GR L   D     + LN           
Sbjct: 487 ----------------------ANLGYVITPTGRRL-PVDPDRGYAALNY---------- 513

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTD-EFNASMLYH 649
                   +VQ+ SRD+ A  ++   +AG    I L +HDE++   P+ + E  A  +  
Sbjct: 514 --------MVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVPEAEAEVTAKEIGR 565

Query: 650 LMTSN 654
           +M   
Sbjct: 566 IMEQT 570


>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 856

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/496 (14%), Positives = 163/496 (32%), Gaps = 121/496 (24%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   +  +G  +D+     + Q ++     +   +  +  G   +    +++   L
Sbjct: 457 PLSVVLSRMERKGIRLDLDHLWKVKQELERTLDDVKASI-DMAAGYKVNLNSPKQVGWLL 515

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLT------PQAIQVFNNRMRASRSAVLKLNTLVEA 297
           F   GL +   T+T     ++  ++L+          ++  +    ++     +  L++A
Sbjct: 516 FDHLGLPVIKKTKTGYSTDVTVLEELSRLDRPEALVAKLLLDHRELTKMLTGFVQPLIDA 575

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++                              P+  + H   +   T      + DP+  
Sbjct: 576 ID------------------------------PKTGKVHTTFEHTSTGTGRLSSRDPNLQ 605

Query: 358 QIIS-----DCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
            + +       ++   +        + AD + IE RVLA ++G++   +AFE G D++  
Sbjct: 606 NLPAYGDWAMKLKEAFVPDRRDGIFIAADYSQIELRVLAHISGDKKLCEAFERGRDIHAE 665

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V   +V+ + R + K++   L Y         +AS   +       ++     
Sbjct: 666 TAAWIFGVDTEKVSPELRRMAKMINFGLLYGMTPY---GLASRLNIGREEAKTIID---- 718

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                                   +  S   ++ + + +++E+ 
Sbjct: 719 ----------------------------------------RYFSAFPKVGDYIEKSYEEA 738

Query: 532 IENGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            + G  + +  +RR +  V      +   L                R  +NT  +    +
Sbjct: 739 RKRGYTLSLFGRRRPLNEVTTVVGNSTAAL---------------KRVAINTPIQSTAAD 783

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYH 649
            T   K+      A+ R  L E +         ++L +HD ++CE     +E  + +L  
Sbjct: 784 IT---KI------AMIR--LDEALQR-ENIDAALILQIHDSLICECSAKDEEVVSGILKE 831

Query: 650 LMTSNPSWAKGLPLKA 665
            M S       +PL+ 
Sbjct: 832 SMESAVE--LSVPLEV 845


>gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 950

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 123/370 (33%), Gaps = 50/370 (13%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVD 212
            D+ + R +   L P+  + ++ W +             +   G  VD     ++     
Sbjct: 515 RDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFA 574

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTP 271
            E  +  +       G   + +  ++L+  LF + GL     T++       ++ + L  
Sbjct: 575 AEARQAQEMAWEYA-GTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDL-- 631

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                  V+   ++G L   L+    ++  +    +    N   
Sbjct: 632 -------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN-TS 671

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIE 385
             R H   +Q +       + DP+   I         +R   +  EG + L+  D + +E
Sbjct: 672 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 731

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y    
Sbjct: 732 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 791

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +             +          + D         E+   +A E  +  T   R
Sbjct: 792 YGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETIFGR 842

Query: 506 VKKAWRQKHS 515
            ++ +   HS
Sbjct: 843 -RRYFPALHS 851



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 928

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 929 VDLA--VPLDV 937


>gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
          Length = 950

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 123/370 (33%), Gaps = 50/370 (13%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVD 212
            D+ + R +   L P+  + ++ W +             +   G  VD     ++     
Sbjct: 515 RDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFA 574

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTP 271
            E  +  +       G   + +  ++L+  LF + GL     T++       ++ + L  
Sbjct: 575 AEARQAQEMAWEYA-GTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDL-- 631

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                  V+   ++G L   L+    ++  +    +    N   
Sbjct: 632 -------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN-TS 671

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIE 385
             R H   +Q +       + DP+   I         +R   +  EG + L+  D + +E
Sbjct: 672 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 731

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y    
Sbjct: 732 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 791

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +             +          + D         E+   +A E  +  T   R
Sbjct: 792 YGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETIFGR 842

Query: 506 VKKAWRQKHS 515
            ++ +   HS
Sbjct: 843 -RRYFPALHS 851



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 928

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 929 VDLA--VPLDV 937


>gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8]
          Length = 955

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 123/370 (33%), Gaps = 50/370 (13%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVD 212
            D+ + R +   L P+  + ++ W +             +   G  VD     ++     
Sbjct: 520 RDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFA 579

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTP 271
            E  +  +       G   + +  ++L+  LF + GL     T++       ++ + L  
Sbjct: 580 AEARQAQEMAWEYA-GTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDL-- 636

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                  V+   ++G L   L+    ++  +    +    N   
Sbjct: 637 -------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN-TS 676

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIE 385
             R H   +Q +       + DP+   I         +R   +  EG + L+  D + +E
Sbjct: 677 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 736

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y    
Sbjct: 737 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 796

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +             +          + D         E+   +A E  +  T   R
Sbjct: 797 YGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETIFGR 847

Query: 506 VKKAWRQKHS 515
            ++ +   HS
Sbjct: 848 -RRYFPALHS 856



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 933

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 934 VDLA--VPLDV 942


>gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
 gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
          Length = 950

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 123/370 (33%), Gaps = 50/370 (13%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVD 212
            D+ + R +   L P+  + ++ W +             +   G  VD     ++     
Sbjct: 515 RDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFA 574

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTP 271
            E  +  +       G   + +  ++L+  LF + GL     T++       ++ + L  
Sbjct: 575 AEARQAQEMAWEYA-GTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDL-- 631

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                  V+   ++G L   L+    ++  +    +    N   
Sbjct: 632 -------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN-TS 671

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIE 385
             R H   +Q +       + DP+   I         +R   +  EG + L+  D + +E
Sbjct: 672 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 731

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y    
Sbjct: 732 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 791

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +             +          + D         E+   +A E  +  T   R
Sbjct: 792 YGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETIFGR 842

Query: 506 VKKAWRQKHS 515
            ++ +   HS
Sbjct: 843 -RRYFPALHS 851



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 928

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 929 VDLA--VPLDV 937


>gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180]
 gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180]
          Length = 897

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 102/674 (15%), Positives = 200/674 (29%), Gaps = 166/674 (24%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
           D  ++  AF   D             +P  L+EAL +        N++ +          
Sbjct: 358 DKKILALAFLLQD---------QGYFLP--LEEALFSPFSLEFLQNAFSQMLQHAQIIGH 406

Query: 87  DIPIHRWICTLVLARS-NGLPSALKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYD 144
           D+     + + + A+    L +      + L       + G  E++  + K E       
Sbjct: 407 DLKP---LLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIPHEKI 463

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------------EQELWYLDQ 190
           ++     E   L          V     KRL     K              E     +  
Sbjct: 464 KDFKTKAEKLELLS--------VELNALKRLCEYFEKGGLEEGLLSLARGVETPFMKVLM 515

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +  +G+ +D      L Q    E   L++++  L  G+  +    ++L   L+ +  L 
Sbjct: 516 GMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLI-GVDFNLNSPKQLGEVLYEKLELP 574

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                 T  + +L    K  P    +   R   ++        L+   + D ++  T   
Sbjct: 575 KNKSHSTDEKNLLKILDK-HPSIPLILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFI- 631

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVR 365
                                         Q  T      +  P+   I         +R
Sbjct: 632 ------------------------------QTGTATGRLSSHSPNLQNIPVRSPKGLLIR 661

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
              IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      +
Sbjct: 662 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDL 718

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
            K +R+I K +   L Y  G+   +K++ T  + L+                        
Sbjct: 719 AKKKRSIAKSINFGLVYGMGS---KKLSETLNIPLSEA---------------------- 753

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                 K        R   + + L+   E+ ++  KA       
Sbjct: 754 ----------------------KSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLL--- 788

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                               GR   +   G N        R+              I Q 
Sbjct: 789 --------------------GRYRAFDFTGANDYIKGNYLREG----------VNAIFQG 818

Query: 605 VSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAK 659
            + D+L  GM+  ++         ++L VHDE++ E  + +          + ++  +  
Sbjct: 819 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYPL 878

Query: 660 GLPLKAEGYESKRY 673
            +PL+   + + R+
Sbjct: 879 RVPLETSAFVANRW 892


>gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 370

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 135/376 (35%), Gaps = 40/376 (10%)

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L  ++  L  G   +    ++L   LF +  +     T+T     +   + +       
Sbjct: 1   MLQSDIYKLADG-EFNIDSPQQLGEVLFEKLQIPSGKKTKTGYSTNVEVLEMIANNRELT 59

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + RM   +                      L++    +         P     +  R H
Sbjct: 60  EDKRMIGKKL---------------------LEYRAYKKLLSTYIEPIPKLAD-KEERIH 97

Query: 337 EELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAW 391
              +Q  T      +++P+   I         +R+  +A EG  L+  D + IE RVLA 
Sbjct: 98  TTFNQNGTSTGRLSSANPNLQNIPVRTDDGIRIRTGFVAKEGHSLISFDYSQIELRVLAE 157

Query: 392 MAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           ++ ++  +KA++  +DL+  T  +  F     ++++ +R+I KV+  ++ Y         
Sbjct: 158 LSKDRHLVKAYQDNQDLHDLTARKIFFKTEEDEISRHERSIAKVINFSILYGKTPF---G 214

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           ++   G+ +   +  + T    EE+     F   + E    H   + F GT     ++  
Sbjct: 215 LSKELGITVQEASQYITT--YFEEYPRVRKFLDIVTETAKLHGFVETFYGT-----RRYI 267

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              ++    +  +  +    T+  G A    K+  + L    K+  N+ ++L     L++
Sbjct: 268 SGINATNKNIQAQAVRMAVNTVVQGTAANIIKKVMIELHEEFKNDENIKMLLQVHDELIF 327

Query: 571 RDVGN-NRSYLNTTTR 585
                  + Y+    +
Sbjct: 328 EVRDEFAKEYMKKIEK 343



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 597 LTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHL 650
               +VQ  + +I+ + M+             ++L VHDE++ E   +  +     +  +
Sbjct: 285 AVNTVVQGTAANIIKKVMIELHEEFKNDENIKMLLQVHDELIFEVRDEFAKEYMKKIEKI 344

Query: 651 MTSNPSWAKGLPLKAEG 667
           M +   + K +PLKA G
Sbjct: 345 MENTVKFKK-VPLKANG 360


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 81/511 (15%), Positives = 163/511 (31%), Gaps = 87/511 (17%)

Query: 14   IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMP--------QVL 57
            +D+   G+        + L      + P  + D           + V+P        + L
Sbjct: 1224 VDIETTGLDH--NTNQIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVVPGRNELIKCEWL 1281

Query: 58   KEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K+  ++ +   V HN  F+   L+   F  + PI     T+V ++             A 
Sbjct: 1282 KKLFKSKETVKVFHNGKFDINFLRVYGFEFEGPIF---DTMVASKLL----------VAS 1328

Query: 117  KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR----EAWRLFGEYCKGD-------- 164
            +  S K+    E             + D+ +        + +     Y   D        
Sbjct: 1329 RYISCKLTHVSE--RYL------NIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLY 1380

Query: 165  VTVTREIF-KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V +   +    L  ++S E +       +   G  VD      L   +  E  ++   L 
Sbjct: 1381 VILEHLLKINNLSDIASVENKCILATSDMELNGIQVDEDKLKFLQDELKQEHQEISNTLY 1440

Query: 224  SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            S       +    +++   L     L + D ++       S                   
Sbjct: 1441 SQLNQSEINLNSQKQVLEKLQE---LKIMDKSKKKIISDTSE------------------ 1479

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                   +  +   +     +    ++  A++         P    P   R +   +Q+ 
Sbjct: 1480 ----STLIRNMSNPI-----ISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLG 1530

Query: 344  THLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                      P+  Q+  D   R C +A +G K V+AD + IE R+ A +A +   ++A+
Sbjct: 1531 AESGRFSCDGPNLQQVPRDKKFRECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQAY 1590

Query: 403  ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +   DL+  T +   N     V K++R + K +   L +        +M + TG NL   
Sbjct: 1591 QQKVDLHSLTASILKNKNINDVNKEERQLAKAVNFGLIFGMSINGL-RMYAETGYNLKLT 1649

Query: 463  AHLVK--TNSAPEEWEDAENFCRWMQENHPE 491
             +  K    S    ++   N+   ++ + P 
Sbjct: 1650 QNEAKEIYTSFFNNFKGILNWHNSVKNSRPT 1680



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 602  VQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN-P 655
            VQ  S DI  E M             I++ VHDEI+ E P D  E    ML   M  +  
Sbjct: 1705 VQGTSADITKETMARLVDLVKPLNAKIIICVHDEIILEVPEDNAEKALKMLIDTMVKSGE 1764

Query: 656  SWAKGLPLKAEG 667
             + K +P++A G
Sbjct: 1765 KYLKKVPVEAMG 1776


>gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem]
 gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem]
          Length = 608

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 172/531 (32%), Gaps = 93/531 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLK 58
           +  L +D ET    DL   GI K   D  + L  F    +P E W               
Sbjct: 35  LRILGLDTET---TDL---GIYK--PDFGIRLIQF---GNPWESWVLPVERGGAFVGAAV 83

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
            AL+      V HN+ F+  V++    + +    W         + L  P A K  G   
Sbjct: 84  TALQKVQ-RFVIHNAAFDLQVIERTLGVPME-QMWPKVEDTKIYSHLVDPRAYKEGGTGH 141

Query: 117 KLSS--------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           KL             EE K  +AR  K             +  +    +  Y   D  + 
Sbjct: 142 KLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 169 REIFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +  ++ PL  +        E +L  +   +   G+ +DV  +  L+    + + +   
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSA-DMLRKAEHYT 258

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            +    YG V S    EKL   L   TG+ ++  T T  ++V +   +   +        
Sbjct: 259 AVARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 281 MRASRSA----VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              ++         +   +E  ++D R+   +                P Q         
Sbjct: 317 AIEAKKWGSWEKTWVRNFIERRDADDRVHPGIN---------------PLQ--------- 352

Query: 337 EELDQIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                         TS+P    + S    VR C +A  G+ +V  D    E RVLA +A 
Sbjct: 353 -------ARTGRMSTSNPSAQNLPSGDWMVRRCFLADPGQLMVSVDYQAQELRVLAALAN 405

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AFE   DL+  T                R +GK+      Y GGA    K+A+ 
Sbjct: 406 DRTMIRAFEEEADLHQVTA---------DAAGMDRKVGKMANFLTVYGGGAG---KLATN 453

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            G+       ++        +         + ++    A    ++ T   R
Sbjct: 454 AGITFPEAKKVLDI------FAATYPGVTDLSKSLQREAANLGYVVTPTGR 498



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 576 NRSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEGMMNATKAGYD--IVLTVHDEI 632
           N  Y+ T T +        G    N +VQ+ SRD+ A  ++    AG    I L +HDE+
Sbjct: 488 NLGYVVTPTGRRLPVDPDRGYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEV 547

Query: 633 VCETPDTD-EFNASMLYHLMTSN 654
           +   P+ + E  A  +  +M   
Sbjct: 548 LASVPEAEAEVTAKEIGRIMEQT 570


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 92/513 (17%), Positives = 167/513 (32%), Gaps = 77/513 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHN 72
           D    G+  Y +D  + L  F    +P E W                AL+      V HN
Sbjct: 41  DTETTGLNIYQDDFGIRLIQF---GNPWESWVLPVERGGAFVGAAVTALQKVQ-RFVIHN 96

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSS--------QK 122
           + F+  V++    + +    W         + L  P A K  G   KL            
Sbjct: 97  AAFDLQVIERTLGVPME-QMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPVT 155

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
            EE K  +AR  K             +  +    +  Y   D  +   +  ++ PL  + 
Sbjct: 156 AEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILVSRLLGKVAPLVPES 213

Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E +L  +   +   G+ +DV  +  L+    + +++    +    YG V S  
Sbjct: 214 SHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSA-DMLRKSEHYTAVARYAYG-VDSVN 271

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             EKL   L   TG+ ++  T T  ++V +   +   +           ++       T 
Sbjct: 272 STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEKTW 330

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                    +R  ++   A                    R H  ++ +        T+ P
Sbjct: 331 ---------VRNFIERRDA------------------NDRVHPGINPLQARTARMSTTSP 363

Query: 355 DPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
               + ++   VR C +A  G+ +V  D    E RVLA +A ++  ++AFE   DL+  T
Sbjct: 364 SAQNLPANDWMVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVT 423

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
                           R +GK+      Y GGA    K+A+  G+       ++      
Sbjct: 424 A---------DAAGMDRKVGKMANFLTVYGGGAG---KLATNAGITFPEAKKVLDI---- 467

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             +         + ++    A    ++ T   R
Sbjct: 468 --FAATYPGVTDLSKSLQREAANLGYVVTPTGR 498



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 576 NRSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEGMMNATKAGYD--IVLTVHDEI 632
           N  Y+ T T +        G    N +VQ+ SRD+ A  ++    AG    I L +HDE+
Sbjct: 488 NLGYVVTPTGRRLPVDPDRGYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEV 547

Query: 633 VCETPDTD-EFNASMLYHLMTSN 654
           +   P+ + E  A  +  +M   
Sbjct: 548 LASVPEAEAEVTAKEIGRIMEQT 570


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 92/513 (17%), Positives = 167/513 (32%), Gaps = 77/513 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHN 72
           D    G+  Y +D  + L  F    +P E W                AL+      V HN
Sbjct: 41  DTETTGLNIYQDDFGIRLIQF---GNPWESWVLPVERGGAFVGAAVTALQKVQ-RFVIHN 96

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSS--------QK 122
           + F+  V++    + +    W         + L  P A K  G   KL            
Sbjct: 97  AAFDLQVIERTLGVPME-QMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPVT 155

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
            EE K  +AR  K             +  +    +  Y   D  +   +  ++ PL  + 
Sbjct: 156 AEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILVSRLLGKVAPLVPES 213

Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E +L  +   +   G+ +DV  +  L+    + +++    +    YG V S  
Sbjct: 214 SHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSA-DMLRKSEHYTAVARYAYG-VDSVN 271

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             EKL   L   TG+ ++  T T  ++V +   +   +           ++       T 
Sbjct: 272 STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEKTW 330

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                    +R  ++   A                    R H  ++ +        T+ P
Sbjct: 331 ---------VRNFIERRDA------------------NDRVHPGINPLQARTARMSTTSP 363

Query: 355 DPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
               + ++   VR C +A  G+ +V  D    E RVLA +A ++  ++AFE   DL+  T
Sbjct: 364 SAQNLPANDWMVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVT 423

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
                           R +GK+      Y GGA    K+A+  G+       ++      
Sbjct: 424 A---------DAAGMDRKVGKMANFLTVYGGGAG---KLATNAGITFPEAKKVLDI---- 467

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             +         + ++    A    ++ T   R
Sbjct: 468 --FAATYPGVTDLSKSLQREAANLGYVVTPTGR 498



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 576 NRSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEGMMNATKAGYD--IVLTVHDEI 632
           N  Y+ T T +        G    N +VQ+ SRD+ A  ++    AG    I L +HDE+
Sbjct: 488 NLGYVVTPTGRRLPVDPDRGYAALNYMVQSTSRDVTASAVLRLHDAGLAPMIRLVIHDEV 547

Query: 633 VCETPDTD-EFNASMLYHLMTSN 654
           +   P+ + E  A  +  +M   
Sbjct: 548 LASVPEAEAEVTAKEIGRIMEQT 570


>gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bifidobacterium longum DJO10A]
          Length = 682

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 123/370 (33%), Gaps = 50/370 (13%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVD 212
            D+ + R +   L P+  + ++ W +             +   G  VD     ++     
Sbjct: 247 RDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFA 306

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTP 271
            E  +  +       G   + +  ++L+  LF + GL     T++       ++ + L  
Sbjct: 307 AEARQAQEMAWEYA-GTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDL-- 363

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                                  V+   ++G L   L+    ++  +    +    N   
Sbjct: 364 -------------------YVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATN-TS 403

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIE 385
             R H   +Q +       + DP+   I         +R   +  EG + L+  D + +E
Sbjct: 404 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 463

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR+  K M   L Y    
Sbjct: 464 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 523

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +             +          + D         E+   +A E  +  T   R
Sbjct: 524 YGLAQQLKIAPREAEALKN---------RYFDTFGKVHDYLESLVANAREKGYTETIFGR 574

Query: 506 VKKAWRQKHS 515
            ++ +   HS
Sbjct: 575 -RRYFPALHS 583



 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+ A +          I+L +HDE+V E    +    + L    M   
Sbjct: 601 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA 660

Query: 655 PSWAKGLPLKA 665
              A  +PL  
Sbjct: 661 VDLA--VPLDV 669


>gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
 gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
          Length = 640

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 111/707 (15%), Positives = 205/707 (28%), Gaps = 151/707 (21%)

Query: 7   DFETRSPIDL----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMP 54
           DFET SP D         +  +  D  +   +F   +         H           + 
Sbjct: 25  DFET-SPRDKWRNDKSAALDAHKAD--ITGISFSVSEGTAIYVPLKHRSGRNAENQAAIW 81

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK   E+ DV  VAHN  FE   L   +   I + +     + A    L S  +    
Sbjct: 82  DYLKLLFESKDVIKVAHNLAFESMFL---YARGIVLQKPCYDTIAASQLTLKSKWE---- 134

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE---AWRLFGEYCKGDVTVTREI 171
                S      K L    CK E  E           E          Y   D   T  +
Sbjct: 135 ---FRSLADSGLKTLAPALCKAEMTEFSTVTEGRFFDELNPQDEKTVRYACADSDYTLRL 191

Query: 172 F-------KRLEP-----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +        R  P     +   E         +   G  VD +           +   + 
Sbjct: 192 YHVFNQWFDRFLPKHRTIVEEVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIVSIR 251

Query: 220 QELESLTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           +E+  +   +   +       K +LF++ GL +   T           +    + + +  
Sbjct: 252 KEIAGIIGNVEIGANASTSAFKKYLFVDLGLPVMKTTAKH-------QEAADDETMILLK 304

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                +R  +++L  LV+            ++    +        +         R H +
Sbjct: 305 EWCATNRPELVRLFELVQ------------EYRKWGKLKSTYIDGYLRFIDEDTGRIHPD 352

Query: 339 LDQIITHLPTSITSDPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           L  + T      + +P+             VR  +IA  GK L+  D + IE RV A+  
Sbjct: 353 LMPLGTETGRFASRNPNMQNCPQKDNDPIGVRKFIIAPAGKVLLSLDFSQIELRVGAFYC 412

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVT-------KDQRAIGKVMELALGYQGGAK 446
            ++  L+ + TG D++  T +  + +   +         K++R I K     + Y     
Sbjct: 413 RDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGVFYGLFPT 472

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             Q+           F   +    A                               CE +
Sbjct: 473 GLQRTLK--------FKAGINPTLA------------------------------ECETI 494

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            +  +  +  +++  +E+ +     +         +RR +  +   +  +          
Sbjct: 495 IQNLKSGYPGLAKWQDEVKKRA--AVSCYSETWLGRRRYLLGI---RSSDW--------- 540

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAG 621
               +     R  LNT  +                    + DIL             +  
Sbjct: 541 ---GKKSFAERCALNTPIQ------------------GTAADILKLACGRIISGLPERLW 579

Query: 622 YDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEG 667
              +L +HDE+V E P+     A + +   M + P  A  +P+ AE 
Sbjct: 580 LKPMLQIHDELVFELPEDKVDEAVVFIKECMETQPFPAFDVPIVAEA 626


>gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 164

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 6/133 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S ++L K G+ +YAE  D  V+LF +  D   V++ D V    +P+ +  AL
Sbjct: 23  LEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVMSAL 82

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGEALK 117
           E+  VT  A N+ FER  +      +    +    W C++V +   GLP +L+ VG  L 
Sbjct: 83  EDEAVTKWAFNAQFERICISRMLGYEAGTYLVPASWKCSMVWSAYMGLPLSLEGVGAVLG 142

Query: 118 LSSQKMEEGKELI 130
           L  QK+ EGK+LI
Sbjct: 143 LEKQKLTEGKDLI 155


>gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018]
 gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
 gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
          Length = 1033

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 120/371 (32%), Gaps = 48/371 (12%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           +   E  +  + + + D G  VD++   ++      E     +    +      + +  +
Sbjct: 623 MVDVEMPVSRVLRGMEDAGAAVDMSRLVSMRDNFAAEAQFAQKMALDVA-NKPINLQSPK 681

Query: 238 KLKTWLFLETGLHLEDLTE----TTCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLN 292
           +L+  LF + GL     T+    TT    L     K+ P                  KL 
Sbjct: 682 QLQQLLFEDMGLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGALLKHRETNKLK 741

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +V+++    R                              R H   +Q I       +S
Sbjct: 742 QIVQSLIDSARY--------------------------EDGRIHTTFEQTIAATGRLSSS 775

Query: 353 DPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           DP+   I         +R+  I      +L+  D + +E R++A  + ++  +KAF++G 
Sbjct: 776 DPNLQNIPNRNVVGREIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGV 835

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D +    +  + +   QV+ DQR+  K M   L Y        K  S +           
Sbjct: 836 DFHKFVASLVYKIPVEQVSPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPAAAEVLKE-- 893

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                  ++ D         E+  + A +  +  T   R ++ + + +S          +
Sbjct: 894 -------KYFDTFGGVHDYLESLVDKARKLGYTQTMFGR-RRYFPKLNSTNRASRESAER 945

Query: 527 AFEQTIENGKA 537
           A       G A
Sbjct: 946 AALNAPIQGSA 956



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 15/133 (11%)

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR----SYLNTTTRQLTREYTYGGKLTE 599
            ++          + L  ++   R L Y      R      LN+T R  +RE      L  
Sbjct: 892  KEKYFDTFGGVHDYLESLVDKARKLGYTQTMFGRRRYFPKLNSTNR-ASRESAERAALNA 950

Query: 600  NIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT 652
             I Q  + DI+   M+   K          ++L +HDE+V E    +      +    M 
Sbjct: 951  PI-QGSAADIMKLAMIQVDKDLREAKVKSRVILQIHDELVLEIAHGEADIVENIVKNAME 1009

Query: 653  SNPSWAKGLPLKA 665
                    +PL  
Sbjct: 1010 HTVE--LDVPLNV 1020


>gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi]
 gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi]
          Length = 858

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 126/397 (31%), Gaps = 57/397 (14%)

Query: 170 EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            I ++L+    +E+           L  +   +   G  +++     L+         L+
Sbjct: 425 AIHEKLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLE 484

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGL--HLEDLTETTCQRVLSSNKKLTPQAIQVF 277
            E+ +L  G   +    ++L   LF + GL    +     +        + L  + +++ 
Sbjct: 485 DEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIA 543

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +                             L +   S+           Q  P   R H 
Sbjct: 544 SK---------------------------ILNWRHLSKLKGTYTDALIKQVDPLDGRIHT 576

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                 T      +S+P+   I       + +R   IA +G K++ AD + IE R+LA +
Sbjct: 577 SFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHV 636

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A      +AF   +D++  T  + F V   ++ +  R   K +   + Y         +A
Sbjct: 637 ANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPF---GLA 691

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+ +   A  +  N     + + + +          H   +   G  C       R 
Sbjct: 692 KRLGITIAEAAEYI--NYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRC-----FVRD 744

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            ++ +  +     +A       G A    KR  + L 
Sbjct: 745 INNTIPYVRQFAERAAINAPLQGTAADIIKRATIQLF 781


>gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1]
          Length = 850

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 138/404 (34%), Gaps = 56/404 (13%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           +   +  L  +   +   G  +D +    L + +      ++ ++E +  G   +    +
Sbjct: 449 MEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAARIRAIEAQVEDMA-GTAVNLNSPK 507

Query: 238 KLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKL 291
           ++   LF++ G   E  T+     +T   VL    +L   +   +       S+     +
Sbjct: 508 QVADLLFVQLGFAPEGKTKGKTGFSTGAAVLEHLARLPGGEVPALLLEHRELSKMQSGFV 567

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L +A                                      H   +  +T      +
Sbjct: 568 VPLQKAAEEG------------------------------EGVIHTTFEPALTGTGRLSS 597

Query: 352 SDPDPLQIIS-----DCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            DP+   I +     + ++  ++   EG   V AD + IE RVLA M+ E   ++AF  G
Sbjct: 598 RDPNLQNIPAFGQWAERIKQGLVPVREGNVFVAADYSQIELRVLAHMSREPRLVEAFRNG 657

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T +  F++AP  VT + R + K++   L Y   A     +A    +     + +
Sbjct: 658 RDIHRETASWVFSMAPEFVTPELRRVAKMINFGLLYGMSAF---GLAERLDMPRGEASMI 714

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           VK       + +A    +   ++  + A    F  T   R+    R      ++    L 
Sbjct: 715 VK------RYFEALPGVQSFLKDIVKEAHAAGFARTLAGRI----RPVDEVTAQGRGGLD 764

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           +    T   G A    ++  V      +    + L L    SLV
Sbjct: 765 RVLVNTPIQGTAADIARKAMVDFDRAFRHDGEVRLFLQVHDSLV 808


>gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 656

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 112/707 (15%), Positives = 198/707 (28%), Gaps = 150/707 (21%)

Query: 7   DFETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVLKE 59
           DFET    +     K  +  +     +   +F   +         H    +   P  L  
Sbjct: 26  DFETAPDNEYRKEPKAALDAHKAH--ITGVSFSVTEGDAIYVPLAHRVGVNCEDPDALWA 83

Query: 60  AL-----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            L     E+ DV  +AHN  FE   L       I +       + A    + S  +  G 
Sbjct: 84  FLKESIFESHDVICIAHNLSFEAMFLYKQ---GIVVQEPCYDTIAAAQLTMKSKWEFRG- 139

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              L    ++     +              R+             Y   D   T  ++ +
Sbjct: 140 ---LHDSGLKLLATSLFGADMPSFSSVTDGRHFDEMNPQEYETVRYACADSDYTLCLYYK 196

Query: 175 LEPLSSK------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                 +            E     +   +   G  VD             +   L  E+
Sbjct: 197 FNNWFDRFLPAHRIITEQLESPTAVMVGCMKYNGIPVDRKAMLEKQTEAVAKVDALKAEI 256

Query: 223 ESLTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
             LT G+   +       K +L+ + GL +   TE        + +     A+Q+     
Sbjct: 257 NELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTEK-------NQEAADDAAMQLLEEYC 309

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              R  +++L   V+            ++    +        +         R H +L  
Sbjct: 310 AQHRPELVRLFQAVQ------------EYRKWGKLKSTYIDGYLDHVNSATGRIHPDLMP 357

Query: 342 IITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           + T        +P+             +R+ ++A  G+ ++  D + IE RV A+   + 
Sbjct: 358 LGTDTGRWAARNPNMQNAPRKTNDPIGIRNFIVAPPGQIIMSLDFSQIELRVGAFYCRDP 417

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPA-QVTK------DQRAIGKVMELALGYQGGAKAFQ 449
             L+ + +G D++  T +  F V     V K      + R I K     + Y    +  Q
Sbjct: 418 KMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVFYGLFPRGLQ 477

Query: 450 KMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
           K      GL+                                          T+ ER K+
Sbjct: 478 KTLRFKAGLD------------------------------------------TSFERCKE 495

Query: 509 AWRQKHSRVSEL--WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                 S  S L  W E  +A        +  + R+R    ++     K++         
Sbjct: 496 IIDNLKSGYSGLTTWQEETKARAAKTCYAETWMGRRRYLPHMLSSDWGKHSFA------- 548

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAG 621
                     R  LNT                   VQ  + DIL             +  
Sbjct: 549 ---------ERCALNTP------------------VQGTAADILKAACARIVAGFPERPW 581

Query: 622 YDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEG 667
              +L +HDE+V   P+     A   +   M   P     +P+ AE 
Sbjct: 582 LKPILQIHDELVFLLPEERLLEAQQFVKKCMEQQPYPDFDVPIVAEA 628


>gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1]
 gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1]
          Length = 608

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 101/580 (17%), Positives = 189/580 (32%), Gaps = 88/580 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLK 58
           +  L +D ET    DL   GI K   D  + L  F    +P E W        V      
Sbjct: 35  LRILGLDTET---TDL---GIYK--PDFGIRLIQF---GNPWESWVLPVERGGVFVGAAV 83

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
            AL+      V HN+ F+  V++    + +    W         + L  P A K  G   
Sbjct: 84  TALQKVQ-RFVIHNAAFDLQVIERTLGVPME-QMWPKVEDTKIYSHLVDPRAYKEGGTGH 141

Query: 117 KLSS--------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           KL             EE K  +AR  K             +  +    +  Y   D  + 
Sbjct: 142 KLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 169 REIFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +  ++ PL  +        E +L  +   +   G+ +DV  +  L+    + +++   
Sbjct: 200 SRLLGKVAPLVPEPSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSA-DMLRKSEHYT 258

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            +    YG V S    EKL   L   TG+ ++  T T  ++V +   +   +        
Sbjct: 259 AVARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++       T          +R  ++   A                    R H  ++
Sbjct: 317 AIEAKKWGSWEKTW---------VRNFIERRDA------------------NDRVHPGIN 349

Query: 341 QIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +        T++P    + +    VR C +A  G+ +V  D    E RVLA +A ++  
Sbjct: 350 PLQARTARMSTNNPSAQNLPAGDWMVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTM 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF+   DL+  T            +   R +GK++  A  +  G       A+  G+ 
Sbjct: 410 IQAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGPSTI---AAQAGIT 457

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                 ++        +E +      + ++    A    ++ T   R          R  
Sbjct: 458 FPEAKRVIAG------FEQSYPEVTALSKSLQREAANLGYVITPTGR---RLPVDPDRGY 508

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
              N + Q+  + +     +   +    P++ +      L
Sbjct: 509 AALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVL 548


>gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
          Length = 817

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 126/397 (31%), Gaps = 57/397 (14%)

Query: 170 EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            I ++L+    +E+           L  +   +   G  +++     L+         L+
Sbjct: 384 AIHEKLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLE 443

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGL--HLEDLTETTCQRVLSSNKKLTPQAIQVF 277
            E+ +L  G   +    ++L   LF + GL    +     +        + L  + +++ 
Sbjct: 444 DEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIA 502

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +                             L +   S+           Q  P   R H 
Sbjct: 503 SK---------------------------ILNWRHLSKLKGTYTDALIKQVDPLDGRIHT 535

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                 T      +S+P+   I       + +R   IA +G K++ AD + IE R+LA +
Sbjct: 536 SFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHV 595

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A      +AF   +D++  T  + F V   ++ +  R   K +   + Y         +A
Sbjct: 596 ANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPF---GLA 650

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+ +   A  +  N     + + + +          H   +   G  C       R 
Sbjct: 651 KRLGITIAEAAEYI--NYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRC-----FVRD 703

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            ++ +  +     +A       G A    KR  + L 
Sbjct: 704 INNTIPYVRQFAERAAINAPLQGTAADIIKRATIQLF 740


>gi|255017642|ref|ZP_05289768.1| DNA polymerase I [Listeria monocytogenes FSL F2-515]
          Length = 316

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 109/376 (28%), Gaps = 94/376 (25%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +   L +    +                  + H   +Q +T      + DP+   I    
Sbjct: 11  IDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRL 70

Query: 361 --SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  T    F
Sbjct: 71  EEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVF 130

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           +V   +V    R   K +   + Y        +     G+        +           
Sbjct: 131 HVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFVSYP--- 184

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                +   ++    A E  ++ T   R     R+    +                    
Sbjct: 185 ---AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------------ 218

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                       R+   R     R+ +NT               
Sbjct: 219 ----------------------------RNFNVRGF-AERTAMNTP-------------- 235

Query: 598 TENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HL 650
               +Q  + DI+ + M+         K    ++L VHDE++ E P+ +      +   +
Sbjct: 236 ----IQGSAADIIKKAMILMSERLVSEKLKAKLLLQVHDELIFEAPEAEIAKLEEIVPDV 291

Query: 651 MTSNPSWAKGLPLKAE 666
           M +       +PLK +
Sbjct: 292 MENAVE--LSVPLKVD 305


>gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
 gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
          Length = 816

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/516 (15%), Positives = 163/516 (31%), Gaps = 133/516 (25%)

Query: 170 EIFKRLEP--LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           E++ +L     + K   L+Y        + + +   G  +DV    +L+  +  +  +++
Sbjct: 400 ELYDKLRNAMFTEKVLTLYYKVDKPLINVIKHMEKNGISLDVEQLLSLSTQISGKLEEIE 459

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-RVLSSNKKLTPQAIQVFN 278
            ++   T G   S +  ++L   LF E  + ++   +T            L+ Q  ++ +
Sbjct: 460 NKIFD-TAGKTFSLQSPKQLGKVLFEEMQIPVQKKLKTGLSSTDNEVLTSLSSQGYEIAD 518

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP--RPSRSH 336
             +                                 +           +  P  +  R  
Sbjct: 519 YLLSW---------------------------RHYIKLKTAYIDPLLLKVNPSEKKHRIS 551

Query: 337 EELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                 +T      +S+P+   I  +  +R    A EG   + AD + IE R+LA++A  
Sbjct: 552 TTYSTTLTLTGRLSSSNPNLQNIPREKNIRKIFTAKEGHYFLCADYSQIELRILAYIANV 611

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    A  +G DL+  T ++ F     ++T + R   K +   + Y  G   F  ++   
Sbjct: 612 ERLKCALASGTDLHTLTASQIFKT--DKITPNLRNKAKAVNFGIVY--GITNF-GLSKQL 666

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            ++    A  +                                         + +  ++ 
Sbjct: 667 AISKEEAASYI-----------------------------------------QKYFDEYP 685

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +    N +    ++     K I+ RK           + +N  + L             
Sbjct: 686 EIKSYMNHIRNQAKKD-TYVKTIMNRKC-----PIQNINSDNRAISL-----------IA 728

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEI 632
            RS +N                    +Q  + DI+   M+   +       +V+ VHDE+
Sbjct: 729 ERSAINAP------------------IQGTAADIIRAAMVRMAQEKELLSHMVMQVHDEL 770

Query: 633 VCETPDTDEFN--ASMLYHLMTSNPSWAKGLPLKAE 666
           V E  +TD     A  +  +M        G+PL  E
Sbjct: 771 VFEL-ETDAIQQLAKKIKQIMEEP----HGIPLLVE 801


>gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
 gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
          Length = 787

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 108/670 (16%), Positives = 211/670 (31%), Gaps = 147/670 (21%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSN-- 103
                VM + LK  LE     +V HNS F+  +L       I I        ++A S   
Sbjct: 193 LTRGYVM-KKLKPHLEKKGTKLVLHNSKFDSHML---LKDGITIRNNIYFDTMIAHSVLN 248

Query: 104 -----GLPSALKAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLF 157
                GL +     G       + M  G+     F  K E              E+  L 
Sbjct: 249 ENDEKGLKAIATKYGRFFGFEDKSMSFGE----LFSNKPEAF---------YSNESMELC 295

Query: 158 GEYCKGDVTVTREIFKR----LEPLSS-------KEQELWYLDQTINDRGYCVDVALAHT 206
             Y   D  +  +++K     ++            EQ L      + + G+ +D + A  
Sbjct: 296 TFYACKDTHLCLKLYKWQLSMMKKQPKLYDVYFNYEQPLTPAVLAMEETGFEIDFSFADM 355

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
               +  E + L+Q++      +  +     +L   L+ E  L           + L   
Sbjct: 356 YKTELQAEVSDLEQKMTRRFGEI--NLNSPAQLSALLYDELKLPDISGKRKADAKTLQKL 413

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            K       +   R   ++     +  L E +N +                         
Sbjct: 414 VKHESDLKLILEYR-DLNKLLTTYVEPLPEKVNKN------------------------- 447

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
                  + H   +Q  T      + DP+ LQ +    R  ++A +G  +   D + IE 
Sbjct: 448 -----TGKLHSSFNQSATVTSRFASKDPN-LQNLPPKARKLIVAPKGYLIFGIDYSQIEP 501

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA---QVTKDQRAIG-------KVME 436
           R LA M+G+      +    DLY +  ++ F +      +   +            K+M+
Sbjct: 502 RTLAHMSGDAGLQYPYLNNIDLYASLASKIFKLPYEACLEADGETYKKAGLPKHPRKMMK 561

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
           + L           +A + G+++      +      + +        WM +    HA E 
Sbjct: 562 VGLLAVMYGITVPSLAESLGISVPEAQKFMD-----DFYSSYPEMTAWMAKQVA-HADET 615

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ T   R ++     H+ +++ ++ LH      +      I R+              
Sbjct: 616 GYVETMQGRKRRFI--GHTVIAKHYHALHAKVVNILGREPENIWRE-------------- 659

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                 P  R+L  +    N+ Y     +++ R           I+Q  +  +L + M+ 
Sbjct: 660 ------PLPRNLKKQYWEVNKDY-----QRVARMS------VNAIIQGSAALMLKKAMIA 702

Query: 617 ATK------AGYDIVLTVHDEIVCETPDTD------------------EFNASMLYHLMT 652
                    AG+ ++ T+HDE++   P+                    +    +   +M 
Sbjct: 703 VNAHLERKGAGWKMMATIHDELLFLIPEAVTPEEIIEIENIMKDVVKLDVPLKVDTEVM- 761

Query: 653 SNPSWAKGLP 662
               W +G+P
Sbjct: 762 --IRWGEGIP 769


>gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1]
 gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1]
          Length = 765

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 108/669 (16%), Positives = 210/669 (31%), Gaps = 124/669 (18%)

Query: 51  PVMP-QVLKEALENTDVTIVAH-NSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--P 106
             +P  V+K+ +   + T +   N++F+  VL     ++  I  +  T + A       P
Sbjct: 125 DQLPLDVVKKYIMQLENTKLDFSNAHFDLQVLYWQMGIN-NIKAYWDTQLAANLLNENEP 183

Query: 107 SALKAVGEALKLSSQKMEEGKELIAR--------FCK-GETHECLYDRNKPNHREAWRLF 157
             LK + E  K   ++    K+L           F K       LY    P        F
Sbjct: 184 HGLKYLYE--KYVKKEDTNSKQLATFGTLFRGIPFTKIPLDIAYLYAGKDPKMSYELAEF 241

Query: 158 --GEYCKGDVTV-TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                   D  V  R +      +   E         +  +G  +D+ L   L+     +
Sbjct: 242 QRKYLNNTDADVVKRHLDDVYRVMIDIEMPTVPAVLDMEIKGIKLDLDLNKKLSAKYRQK 301

Query: 215 RTKLDQELE------------------SLTYGLVS--SSRCLEKLKTWLFLETGLHLEDL 254
           + +++++L+                   L   L +  +    ++L  + +   GL   D 
Sbjct: 302 KAEVEEKLKIEFNKYDKEFKEFKIKHPDLASRLSNPINISSPKQLGIFFYDMLGLKPVDR 361

Query: 255 TE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
            +   T   +L        + I  +    +   + + KL T++                 
Sbjct: 362 EKPRGTGADILGKFDVPVAKLILEYRELDKLLGTYIDKLPTVLSK--------------- 406

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS--DCVRSCVIA 370
                             R  + H   +Q  T      +  P+   I S    +R   I 
Sbjct: 407 ------------------RTGKIHCTFNQYGTVTGRFSSDSPNLQNIPSHNKDIRKMFIP 448

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ------- 423
            +G  L+  D +  E R LA M+G++  +KA++ G+D+Y T  +  + V   +       
Sbjct: 449 DDGNILIGGDYSQQEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPYEECLEFNPD 508

Query: 424 -----VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
                + K +R+  K + L + Y  G  +    A    L       ++       E+   
Sbjct: 509 GTTNTIGKQRRSNLKGVVLGIIYGRGVNSI---AEKLNLTKKEAQSIID------EFFTL 559

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
               +   E+    A E  ++ T   R     R++   ++    E     + T +N    
Sbjct: 560 FPKVKQFTEDSIRMARELGYVTTLSGR-----RRRLPDINLPRYEFKYKDKSTSDNFNPF 614

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRS---------LVYRDVGNNRSYLNTTTRQLTR 589
                        +  + +   ML   R             R  G +         Q  R
Sbjct: 615 FDTADDVENDEVPEYVQLSYTAMLEKSRFDKKRKNVILSKARTEGISIKNNTGLIAQAER 674

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +         + +Q  + D+    M+         + GY +++ VHDEI+ + P      
Sbjct: 675 Q------CVNSRIQGSAADMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPIDVVKE 728

Query: 644 AS-MLYHLM 651
              +L   M
Sbjct: 729 VKPILESCM 737


>gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 911

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/606 (14%), Positives = 182/606 (30%), Gaps = 131/606 (21%)

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L N+++    ++      +LK     ++    +    ++A  +   + +  +   +KL
Sbjct: 382 EFLNNSNLKKYTYDIKKTTYLLKNH-KYNVLASNFDFDFMVACYSLNANVVSDLSNQIKL 440

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
               + E + +   F KG       D +  +   + + +      D  + +        L
Sbjct: 441 -VDNLIELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDL 499

Query: 179 -SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS---R 234
               +  L  +   I  +G  +D        Q +  +   ++ +++ L    + ++    
Sbjct: 500 YLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEWQMKILVAEEIDNNFNFS 559

Query: 235 CLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             ++++  LF +  L L +L + TT + VL       P    +  +R + ++     L  
Sbjct: 560 SPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITYHPIINLLLEHR-KYTKLYTTYLKG 616

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
             + +  D ++                                      +T+     +S 
Sbjct: 617 FEKFIFDDNKVHTIFNH-------------------------------TLTNTGRLSSSY 645

Query: 354 PDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           P+   I         VR   I +  K  +  D + IE RVLA M+ E   + AF    D+
Sbjct: 646 PNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADI 705

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           ++      FN++  Q+T +QR I KV    +               + LN+N        
Sbjct: 706 HLQAAKLIFNLSDDQITSEQRRIAKVFNFGI-----LYGLTDFGLASDLNMN-------- 752

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                               + K+  +  +S    L +   +  
Sbjct: 753 ----------------------------------VNQAKQMIKDYYSAFPSLLDFKEKQV 778

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           E     G       RR                              N  +  N   RQ  
Sbjct: 779 EIATSKGYITTLSNRRRY---------------------------INELNSTNHNIRQFG 811

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642
           +            +Q  + DIL   M++  K          I+  +HDEI+ E  D    
Sbjct: 812 KRIA-----VNTPIQGTASDILKVAMISIYKKLKEQNLDAKIICQIHDEIILEVDDNQLE 866

Query: 643 NASMLY 648
               + 
Sbjct: 867 QTKKIV 872


>gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 911

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/606 (15%), Positives = 183/606 (30%), Gaps = 131/606 (21%)

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L N+++    ++      +LK     ++    +    ++A  +   + +  +   +KL
Sbjct: 382 EFLNNSNLKKYTYDIKKTTYLLKNH-KYNVLASNFDFDFMVACYSLNANVISDLSNQIKL 440

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
               M E + +   F KG       D +  +   + + +      D  + +        L
Sbjct: 441 -VDNMIELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDL 499

Query: 179 -SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS---R 234
               +  L  +   I  +G  +D        Q +  +   ++ +++ L    + ++    
Sbjct: 500 YLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNNFNFS 559

Query: 235 CLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             ++++  LF +  L L +L + TT + VL       P    +  +R + ++  +  L  
Sbjct: 560 SPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITFHPIINLLLEHR-KYTKLYITYLKG 616

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
             + +  D ++                                      +T+     +S 
Sbjct: 617 FEKFIFDDNKVHTIFNH-------------------------------TLTNTGRLSSSY 645

Query: 354 PDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
           P+   I         VR   I +  K  +  D + IE RVLA M+ E   +KAF    D+
Sbjct: 646 PNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQDADI 705

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           ++      FN++  Q+T +QR I KV    +                 LN+N        
Sbjct: 706 HLQAAKLIFNLSDDQITSEQRRIAKVFNFGI-----LYGLTDFGLANDLNMN-------- 752

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                               + K+  +  +S    L +   +  
Sbjct: 753 ----------------------------------VNQAKQMIKDYYSAFPSLLDFKEKQV 778

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           E     G       RR                              +  +  N   RQ  
Sbjct: 779 EIATNQGYITTLSNRRRY---------------------------IDELNSTNHNIRQFG 811

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642
           +            +Q  + DIL   M++  K          IV  +HDEI+ E  D    
Sbjct: 812 KRIA-----VNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVNDNQLE 866

Query: 643 NASMLY 648
               + 
Sbjct: 867 QTKKIV 872


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 94/510 (18%), Positives = 166/510 (32%), Gaps = 99/510 (19%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D    G         + L   G DD    + D      +   L+E +    V    HN  
Sbjct: 28  DTETTG-------NRIRLVQLG-DDEKTYVIDLYEIHDITP-LRELISEKGVI--GHNLK 76

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK-AVGEALKLSSQKMEEGKELIAR 132
           F+   L    N  I       T++ +   G    +L   VG  L  +  K          
Sbjct: 77  FD---LHYLMNYQIEPLATFDTMIASFLLGYERHSLNHLVGNLLGYTLDK---------- 123

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----------------- 175
                    L D   P   +A     +Y   DV V RE+F +L                 
Sbjct: 124 ------SYQLSDWGAPVLSDAQ---LKYAAKDVDVLRELFPKLRDMLNELEGERGEELLK 174

Query: 176 ----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                      P++  E         +   G  VD+      + + D+ER    +  E L
Sbjct: 175 TRTARIFGLKSPVAIVEMAFVKEVAKLERNGLPVDIETLE--STLKDIERKTQKKVQEFL 232

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
               V      +++   L  +  L+L    +       S++ K+      V   R+    
Sbjct: 233 IKFRVD-PFSPKQVGQLLTSKYKLNLPRTQKGNV----STDDKVLSSYAHVEPVRLLLEI 287

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             + KL+   + +                             NL +  R + E  QI   
Sbjct: 288 RKLKKLSDKFKEIKE---------------------------NL-KGDRLYPEFKQIGAV 319

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                +  P+ +Q +    R+   A EG   V+AD + IE R+ A    E+  ++AF  G
Sbjct: 320 TGRMSSLKPN-VQNVPREERAIFKAPEGNTFVIADFSQIELRIAAEYVNEELMIRAFREG 378

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAH 464
           +DL+  T +        ++TK++R + K +   L Y   AK   + A T  G+ ++    
Sbjct: 379 KDLHRYTASLVLGKREEEITKEERQLAKAINFGLIYGISAKGLAEYARTGYGVEISEEEA 438

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
               N   + ++  + +   +++   E  +
Sbjct: 439 ETFRNRFFKNFKAFKLWHEKVKKELKEKGV 468


>gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
 gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
          Length = 854

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 143/408 (35%), Gaps = 44/408 (10%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  ++    + L+  +++   +++  +     G   +    +++
Sbjct: 453 DVEIPLIPVLWRMETWGIGLNRESFNGLDSDLEIRIVEIEDTIAEK-GGERINLNSPKQV 511

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTP------QAIQVFNNRMRASRSAVLKLNT 293
              LF +  +     T+T     ++  ++L        +  ++       S+     ++ 
Sbjct: 512 AWLLFEKLNMPPIKETKTGYSTDVTVLEELVKMGLPEKEVPELILEHRELSKMRSGFVHP 571

Query: 294 LVEAMNSDGR-LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           LV A + +   + GT +   ++ TGR S      QNLP   +    L + +         
Sbjct: 572 LVSAADENTDLIHGTFE-STSTGTGRLSSRDPNLQNLPAFGQWSTRLKEGL--------- 621

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                          V   +G   V AD + +E RVLA +  E+   +AFE   D++  T
Sbjct: 622 ---------------VPHKDGNIFVAADYSQVELRVLAHLCDEKRLKEAFEARRDIHTET 666

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +  FNV P  VT + R   KV+   L Y   +     +AS  G+       ++      
Sbjct: 667 ASWIFNVNPQMVTPELRRFAKVVNFGLLYGMSSF---GLASRLGIGQQEAGDIIN----- 718

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
             +  A    R   E   + A +  +  T   R++     + S        L +    T 
Sbjct: 719 -RYFRALPKVRDYIEKSYQDARKRGYAVTDFGRIRPL--DEVSVNPRDRGALKRIAVNTP 775

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             G A    +   +      + + N+ L+L    SLV       +  +
Sbjct: 776 IQGTAADIARMAMIKFYKHFEKRQNVHLVLQIHDSLVCECAAEEKEAV 823


>gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2]
 gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2]
          Length = 608

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 102/584 (17%), Positives = 185/584 (31%), Gaps = 96/584 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLK 58
           +  L +D ET    DL       Y  D  + L  F    +P E W        V      
Sbjct: 35  LRILGLDTET---TDLG-----IYKPDFGIRLIQF---GNPWESWVLPVERGGVFVGAAV 83

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
            AL+      V HN+ F+  V++    + +    W         + L  P A K  G   
Sbjct: 84  TALQKVQ-RFVIHNAAFDLQVIERTLGVPME-QMWPKVEDTKIYSHLVDPRAYKEGGTGH 141

Query: 117 KLSS--------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           KL             EE K  +AR  K             +  +    +  Y   D  + 
Sbjct: 142 KLEELTKFYIDPATAEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199

Query: 169 REIFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +  ++ PL  +        E +L  +   +   G+ +DV  +  L+    + + +   
Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSA-DMLRKAEHYT 258

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            +    YG V S    EKL   L   TG+ ++  T T  ++V +   +   +        
Sbjct: 259 AVARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316

Query: 281 MRASRSA----VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              ++         +   +E  ++D R+   +                P Q         
Sbjct: 317 AIEAKKWGSWEKTWVRNFIERRDADDRVHPGIN---------------PLQ--------- 352

Query: 337 EELDQIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                         T+ P    + ++   VR C +A  G+ +V  D    E RVLA +A 
Sbjct: 353 -------ARTARMSTTSPSAQNLPANDWMVRRCFLADPGQLMVSVDYQAQELRVLAALAN 405

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AFE   DL+  T                R +GK+      Y GGA    K+A+ 
Sbjct: 406 DRTMIRAFEEEADLHQVTA---------DAAGMDRKVGKMANFLTVYGGGAG---KLATN 453

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+       ++        +         + ++    A    ++ T   R         
Sbjct: 454 AGITFPEAKKVLDI------FAATYPGVTDLSKSLQREAANLGYVITPTGR---RLPVDP 504

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
            R     N + Q+  + +     +   +    P++ +      L
Sbjct: 505 DRGYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVL 548


>gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
 gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
          Length = 829

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/515 (15%), Positives = 167/515 (32%), Gaps = 131/515 (25%)

Query: 170 EIFKRL--EPLSSKEQELWY-LDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLD 219
           E++++L     + K   L+Y +D+        +   G  +DV    +L+  +  +  +++
Sbjct: 400 ELYEKLCNAMFTEKVLTLYYKVDKPLINAIKHMEKNGISLDVEQLLSLSTQISGKLEEIE 459

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-RVLSSNKKLTPQAIQVFN 278
            ++  +  G   S +  ++L   LF E  + ++   ++            L+ Q  ++ +
Sbjct: 460 SKIFDIA-GKTFSLQSPKQLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGYEIAD 518

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP--RPSRSH 336
             +                                 +           +  P     R  
Sbjct: 519 YLLSW---------------------------RHYIKLKTAYIDPLLLKVNPNEEKHRIS 551

Query: 337 EELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                 +T      +S+P+   I  +  +R    A EG   + AD + IE R+LA++A  
Sbjct: 552 TTYSATLTLTGRLSSSNPNLQNIPREKEIRKIFTAKEGHHFLCADYSQIELRILAYIANV 611

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    A  +G DL+  T ++ F     ++T D R   K +   + Y        K  + +
Sbjct: 612 ERLKCALASGTDLHTLTASQIFKT--DKITPDLRNKAKAVNFGIVYGITNFGLSKQLAIS 669

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                               E+A ++ +   + +PE       I      ++   R+   
Sbjct: 670 K-------------------EEAASYIQKYFDEYPE-------IKIYMNHIRNQARK--- 700

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                            +     +  ++  +  +    + NN  + L +           
Sbjct: 701 -----------------DTYVKTMMNRKCPIQNI----NSNNRTISLVA----------- 728

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEI 632
            RS +N                    +Q  + DI+   M+   +       +V+ VHDE+
Sbjct: 729 ERSAINAP------------------IQGTAADIIRTAMVRMAQEKELLSHMVMQVHDEL 770

Query: 633 VCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           V E   D  +  A  +  +M      + G+PL  E
Sbjct: 771 VFELETDVIQQLAKKIKRIMEE----SHGIPLLVE 801


>gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis]
 gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis]
          Length = 267

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 112/337 (33%), Gaps = 93/337 (27%)

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       +SDP+   I         +R   +A  G  +V AD + IE R++A ++ + 
Sbjct: 1   AVAITGRLASSDPNLQNIPVRTAEGRRIREAFVAPPGSHIVSADYSQIELRIMAHLSQDA 60

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF   ED++  T A  F V  A V  +QR   KV+   L Y   A     +A    
Sbjct: 61  GMLSAFANNEDIHRATAAEIFGVERAAVDSEQRRYAKVINFGLIYGMSAF---GLAQNLN 117

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +  +  A+ ++                                             ++  
Sbjct: 118 IERSAAANYIERYF-----------------------------------------ARYPG 136

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +  N+  +  +Q  +     I  +R  VP +                 + V R  G  
Sbjct: 137 VRQYMNDTRELAKQ--QGYVETIFGRRLWVPEI---------------NSANVQRRNGAE 179

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHD 630
           R+ +N                     Q  + D++   M      + A K    +++ VHD
Sbjct: 180 RAAINAPM------------------QGTAADLIKLAMIAVDQWLTAEKLQTKLIMQVHD 221

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           E+V E PD +       L  LM S  +    +PL AE
Sbjct: 222 ELVLEVPDAELALIQEHLPRLMQSVAT--LDVPLLAE 256


>gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
 gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
          Length = 911

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/607 (15%), Positives = 185/607 (30%), Gaps = 133/607 (21%)

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L N ++    ++      +LK     ++    +    ++A  +   + +  +   +KL
Sbjct: 382 EFLNNKNLKKYTYDIKKTTYLLKNH-QYNVLPSNFDFDFMVACYSLNANVVSDLSNQIKL 440

Query: 119 SSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            +Q+ E E  E+I  F KG       D +  +   + + +      D  + +        
Sbjct: 441 VNQQEEIETNEII--FGKGVKKNPDIDIDIKSKYISKKAYLLKKYSDKLIEQLKQTNTYD 498

Query: 178 L-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS--- 233
           L    +  L  +   I  +G  +D        + +  +   ++ +++ +    + ++   
Sbjct: 499 LYLKIDYPLIEVLYDIEVQGILIDKEQLKLQTEQILKKINHIEWQMKIMVAEEIDNNFNF 558

Query: 234 RCLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              ++++  LF +  L L +L + TT + VL       P    +  +R + ++     L 
Sbjct: 559 SSPKQIQELLFDK--LKLPNLEKGTTSKEVLEKLITFHPIINLLLEHR-KYTKLYTTYLK 615

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
              + +  D ++                                      +T+     +S
Sbjct: 616 GFEKFIFDDNKVHTIFNH-------------------------------TLTNTGRLSSS 644

Query: 353 DPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
            P+   I         VR   I +  K  +  D + IE RVLA M+ E   +KAF    D
Sbjct: 645 YPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQNAD 704

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +++      FN++  Q+T +QR I KV    +                 LN+N       
Sbjct: 705 IHLQAAKLIFNISDNQITSEQRRIAKVFNFGI-----LYGLTDFGLANDLNMN------- 752

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                + K+  +  +S    L +   + 
Sbjct: 753 -----------------------------------VNQAKQMIKDYYSAFPSLLDFKEKQ 777

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            E     G       RR                              +  +  N   RQ 
Sbjct: 778 VEIATNQGYITTLSNRRRY---------------------------ISELNSTNHNIRQF 810

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641
            +            +Q  + DIL   M++  K          IV  +HDEI+ E  +   
Sbjct: 811 GKRIA-----VNTPIQGTASDILKVAMISIYKKIKEQNLDAKIVCQIHDEIILEVDNNQL 865

Query: 642 FNASMLY 648
                + 
Sbjct: 866 EQTKKIV 872


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/503 (15%), Positives = 159/503 (31%), Gaps = 75/503 (14%)

Query: 11   RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVTI 68
               +D+   G+  + E   + L     +++PV ++D  +  +  +   L++ L + ++  
Sbjct: 1263 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1320

Query: 69   VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
            +  N  F+   L      +  I     T + ++       L             + E K 
Sbjct: 1321 IIQNGKFDTKFL---LYNNFNITNIFDTYIASKL------LDKNKNMYGFKLNNIVE-KY 1370

Query: 129  LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
            L     K + +    +               Y   D +   +++K+L    + E      
Sbjct: 1371 LSVYLDKQQQNSVWNN------SLLNNNQLFYAARDSSCLLKLYKKLSEQITAENMQIVN 1424

Query: 189  DQT---------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCL 236
            D           +   G  VD+    +LN+  D    +L+ E + L   L +   +    
Sbjct: 1425 DIENKCILPICDMELNGIKVDL---ESLNKSTDQILNELNVERDKLKKELKNDDINVNSQ 1481

Query: 237  EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            +++   L       + DL+         +N K       V   R                
Sbjct: 1482 QQILKALQDNN---VRDLSNKLIDNTSDANLKNFINHNAVILLR---------------- 1522

Query: 297  AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                         +    +         P     + ++ H   +Q+ T      +  P+ 
Sbjct: 1523 ------------NYRKLYKLYSAFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNL 1570

Query: 357  LQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
             QI     +R   I +E    ++AD   IE ++ A +  ++  LKA+    DL+  T + 
Sbjct: 1571 QQIPRQKNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASI 1630

Query: 416  SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT---GLNLNTFAHLVKTNSAP 472
                   ++ K+ R + K +   L Y       +  A+T     +NL+            
Sbjct: 1631 ITKKGINEINKEDRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQC-----LYFYN 1685

Query: 473  EEWEDAENFCRWMQENHPEHAIE 495
              +E  +   RW        A+E
Sbjct: 1686 SFFEHYKGLSRWHNSVKQTKALE 1708



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 596  KLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHL 650
            K     VQ    DIL   ++   K        I+L VHDEI+ E      E    +L   
Sbjct: 1726 KALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALKILVES 1785

Query: 651  MT 652
            M 
Sbjct: 1786 ME 1787


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/492 (14%), Positives = 165/492 (33%), Gaps = 53/492 (10%)

Query: 11   RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVTI 68
               +D+   G+  + E   + L     +++PV ++D  +  +  +   L++ L + ++  
Sbjct: 1258 YCGLDMETTGLEVFGE--KIRLIQISVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1315

Query: 69   VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
            +  N  F+   L      +  I     T + ++       L             + E K 
Sbjct: 1316 IIQNGKFDTKFL---LYNNFNITNIFDTYIASKL------LDKNKNMYGFKLNNIVE-KY 1365

Query: 129  LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
            L     K + +    +               Y   D +   +++K+L      E      
Sbjct: 1366 LSVYLDKQQQNSVWNN------SLLNNNQLFYAARDSSCLLKLYKKLSEQIKAEN----- 1414

Query: 189  DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
             Q +ND                        D EL  +   L + ++  +++      E  
Sbjct: 1415 MQIVNDI--------------ENKCILPICDMELNGIKVDLENLNKSTDQILN----ELN 1456

Query: 249  LHLEDLTETTCQRVLS-SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
            +  + L +      ++ ++++   +A+Q  N R  +++      +  ++   +   +   
Sbjct: 1457 VERDKLKKELKNEDINVNSQQQILKALQDNNVRDLSNKLIDNTSDANLKNFINHNAVILL 1516

Query: 308  LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRS 366
              +    +         P     + ++ H   +Q+ T      +  P+  QI     +R 
Sbjct: 1517 RNYRKLYKLYSAFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIRE 1576

Query: 367  CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
              I +E    ++AD   IE ++ A +  ++  LKA+    DL+  T +        ++ K
Sbjct: 1577 IFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINK 1636

Query: 427  DQRAIGKVMELALGYQGGAKAFQKMASTT---GLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            + R + K +   L Y       +  A+T     +NL+              +E  +   R
Sbjct: 1637 EDRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQC-----LYFYNSFFEHYKGLSR 1691

Query: 484  WMQENHPEHAIE 495
            W        A+E
Sbjct: 1692 WHNIVKQTKALE 1703



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 596  KLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHL 650
            K     VQ    DIL   ++   K        I+L VHDEI+ E      E    +L   
Sbjct: 1721 KALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALRILVES 1780

Query: 651  MT 652
            M 
Sbjct: 1781 ME 1782


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 83/479 (17%), Positives = 168/479 (35%), Gaps = 59/479 (12%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL- 86
           + L   G D+    + D +   + P+V+K  ++N   +  I+ HN  F+   LK   N+ 
Sbjct: 46  IRLIQIG-DEENTFVIDLLK--INPEVVKNHIQNLIENKGIIGHNLKFDLKFLKTNLNIL 102

Query: 87  -DIPIHRWICTLVLARSNGLPS-----------ALKAVGEALKLSSQKMEEGKELIARFC 134
             I     I + +LA+ +               +L       K      +   E I    
Sbjct: 103 PKIVFDTMIASQILAKGDSNQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSSEQIEYAA 162

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
           K         + + N      L  +        T ++F  + P+++ E         I  
Sbjct: 163 KDIDTLRHLFKEEKNQLNQDNLHKKASGE----TFKVFGVINPVAALEMAFLPALVEIEL 218

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +D   A  L +  + E      + +  T          +++  +L  +  + L   
Sbjct: 219 SGIPIDEEEAKKLLKQKESEFQSDYMKFKIKTGA---DPFSPQQVVNYLTNKLKIKLPKT 275

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
            + +     SS          +   R+     A  K+   ++           LQF    
Sbjct: 276 EKGSF----SSQDVFLKDYEDIEEVRLLLKLRADKKIIDKIKE---------ILQFT--- 319

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
                           R  R + E  QI        +  P+ LQ I   ++      EG 
Sbjct: 320 ----------------RNERVYGEFKQIGAATGRMSSLRPN-LQNIPKNLKYLFKPKEGY 362

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           K +VAD + IE R+ A    ++  + AF  G+DL+  T +     +  ++TK++R + K 
Sbjct: 363 KFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGKSYDEITKEERQLAKA 422

Query: 435 MELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           +   L Y    K+  + A +  G++++         +  + ++  +++   ++E+  +H
Sbjct: 423 INFGLIYGMSPKSLVEYAKANYGVSISLQEAKKFHENYFKFYKSFKDWHDKVKEHLDKH 481


>gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis]
          Length = 241

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 82/234 (35%), Gaps = 17/234 (7%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +   L +   ++              P   + H    Q +T      + DP+   I    
Sbjct: 16  VEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTGRLSSVDPNLQNIPIRM 75

Query: 361 --SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +   EG KL  +D + IE RVLA ++G++   +AF  G+D++ +T    F
Sbjct: 76  EEGRKIRQAFVPQQEGWKLFASDYSQIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVF 135

Query: 418 NVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +  P  VT + R   K +   + Y        +      +        +        + 
Sbjct: 136 GIENPEDVTANLRRQAKAVNFGVVYGISDYGLSQ---NLNITRKAAQEFID------RYF 186

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           D     +   E+  + A E+ ++ T   R ++     H+R   L +   +    
Sbjct: 187 DKYPGVKQFMEDIVKEAKENGYVETLFHR-RRYLPDIHNRNFNLRSFAERTAIN 239


>gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 169

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 93/173 (53%), Gaps = 11/173 (6%)

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + Q    ++  W  L  A    I + +            + ++  +  L L LPSGR L
Sbjct: 1   MFGQGFPAIAAFWQALQCAVTDAIGHPETA-----HTCCGIAVQYSRAWLRLRLPSGRVL 55

Query: 569 VY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
            Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY
Sbjct: 56  YYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGY 115

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 116 SIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 168


>gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5]
          Length = 124

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L K G+ +Y E  D  ++LFA+  D+ PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAV 112
            ALE+  V   A N+ FER  L           +    W C+++ + + GLP +L+ V
Sbjct: 61  LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118


>gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium]
          Length = 283

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 97/247 (39%), Gaps = 17/247 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGI 384
           +  R H   +Q +       +++P+   I         +R   +   E   L+ AD + I
Sbjct: 3   KTGRVHTSYNQAVAVTGRLSSNNPNLQNIPVRTERGREIRKAFVPRDENHLLISADYSQI 62

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++G+    +AF+ G+D++  T A+ +N+  A VTK+ R   K +   + Y  G
Sbjct: 63  ELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNIEEADVTKEMRYKAKSVNFGIIYGQG 122

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A     +A    +  +    ++   +  +++ + + +     +   ++   +   G    
Sbjct: 123 AF---GLAENLKITRSEAKEIID--NYKKQFPNIQQYMDAQMKFAQQNGYVETLWGR--- 174

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLP 563
             K+  +  +S    +     +        G A    K   + +    KD+     ++L 
Sbjct: 175 --KRWLKDINSGNFTVRGYAERNAINMPIQGTAADMIKLAMIKIHREFKDRGFKSKMILQ 232

Query: 564 SGRSLVY 570
               LV+
Sbjct: 233 VHDELVF 239


>gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii]
          Length = 241

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 83/234 (35%), Gaps = 17/234 (7%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360
           +   L +   ++              P   + H    Q +T      + DP+   I    
Sbjct: 16  VEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTGRLSSVDPNLQNIPIRM 75

Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +  + G KL  +D + IE RVLA ++G++   +AF  G+D++ +T  R F
Sbjct: 76  EEGRKIRQAFVPQQAGWKLFASDYSQIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVF 135

Query: 418 NVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +  P  VT + R   K +   + Y        +      +        +        + 
Sbjct: 136 GIEKPEDVTANLRRQAKAVNFGVVYGISDYGLSQ---NLNITRKAAQEFID------RYF 186

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           +     +   E+  + A E+ ++ T   R ++     H+R   L +   +    
Sbjct: 187 EKYPGVKQFMEDIVKEAKENGYVETLFHR-RRYLPDIHNRNFNLRSFAERTAIN 239


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 89/494 (18%), Positives = 171/494 (34%), Gaps = 89/494 (18%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL- 86
           + L   G D+    + D +   + P+V+K  ++N   +  I+ HN  F+   LK   N+ 
Sbjct: 45  IRLIQIG-DEENTFVIDLLK--INPEVVKNHIQNLIENKGIIGHNLKFDLKFLKTNLNIL 101

Query: 87  -DIPIHRWICTLVLAR-SNGLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLY 143
             I     I + +LA+  N    +L A  +    L   K               T++   
Sbjct: 102 PKIVFDTMIASQILAKGDNSQRHSLSASAKRFVSLDVDK---------------TYQKSP 146

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFK------------------------RLEPLS 179
              K    E      EY   D+   R +FK                         + P++
Sbjct: 147 WWAKDLSPEQ----IEYAAKDIDALRHLFKEEKNQLNQDNLHKKASGETFKVFGVINPVA 202

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           + E         I   G  +D   A  L +  ++E      + +  T           ++
Sbjct: 203 ALEMAFLPALVEIELSGIPIDEEEAKKLLKQKELEFQADYMKFKIKTGA---DPFSPLQV 259

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
             +L  +  + L    + +     SS          +   R+     A  K+   ++   
Sbjct: 260 VNYLTNKLKIKLPKTEKGSF----SSQDVFLKDYEDIEEVRLLLKLRADKKIIDKIKE-- 313

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   LQF                    R  R + E  QI        +  P+ LQ 
Sbjct: 314 -------ILQFT-------------------RNKRVYGEFKQIGAATGRMSSLRPN-LQN 346

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           I   ++      EG K +VAD + IE R+ A    ++  + AF  G+DL+  T +     
Sbjct: 347 IPKNLKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGK 406

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAPEEWEDA 478
           +  ++TK++R + K +   L Y    K+  + A +  G+++N         +  + ++  
Sbjct: 407 SYDEITKEERQLAKAINFGLIYGMSPKSLIEYAKANYGVSINLQEAKKFHENYFKFYKSF 466

Query: 479 ENFCRWMQENHPEH 492
           +++   ++E+  +H
Sbjct: 467 KDWHDRVKEHLDKH 480


>gi|293571802|ref|ZP_06682818.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608056|gb|EFF37362.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 280

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 105/341 (30%), Gaps = 93/341 (27%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADL 381
            +    + H    Q +T      + DP+   I         +R   +  E    +  +D 
Sbjct: 1   MIQSDGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDY 60

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALG 440
           + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +   + 
Sbjct: 61  SQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIV 120

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y        +     G++       + T      + +     +   E     A +  ++ 
Sbjct: 121 YGISDYGLSQ---NLGISRKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE 171

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                 +  +RR +P +  +        
Sbjct: 172 -------------------------------------TLYHRRRYLPDINSRNY------ 188

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
              + RS         R+ +NT                   +Q  + DIL   M+   K 
Sbjct: 189 ---NIRSFA------ERTAINTP------------------IQGSAADILKIAMIELDKR 221

Query: 621 G------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSN 654
                    ++L VHDE+V E P+ +  +   L   +M   
Sbjct: 222 LKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 262


>gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26]
 gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26]
          Length = 728

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 124/782 (15%), Positives = 223/782 (28%), Gaps = 212/782 (27%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------------- 50
           +D ET             Y  D    L        P E W    D               
Sbjct: 27  LDTETYGSNPFN-----LYLPDF--RLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLPR 79

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV------------ 98
             + Q + EAL+   V    HN+ ++R VL    ++ +       T+V            
Sbjct: 80  EAVRQAVLEALKRPVVY---HNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLG 136

Query: 99  ---LARSN-GL--------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
               A++  GL        P  L    +   +S       K++     K +  + L D  
Sbjct: 137 LKEWAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKL--KPDWLQRLKDAF 194

Query: 147 KPNH--------------------------------REAWRLF-----GEYCKGDVTVTR 169
              H                                   +RLF       Y   D   T 
Sbjct: 195 LAVHNGGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTL 254

Query: 170 EIFKRLE---PLSSKEQELW-YLDQTIND-------RGYCVDVALAHTLNQIVDVERTKL 218
            +++ +E    L  K   L+  ++  +ND       RG  VD      + + +     + 
Sbjct: 255 ALWEHVEVFFELHPKLHTLYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEK 314

Query: 219 DQELESL--------TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSN 266
            QE + L             +     ++L T L+   G  +     +   +T +  ++  
Sbjct: 315 AQEAQELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKL 374

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
             L+P+            ++ + K    +EA  +           G  +           
Sbjct: 375 LTLSPK---------DKKKAPLAK--AFLEAKQA---------HEGLKKLLSTYTDSILE 414

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--------------SDCVRSCVIASE 372
           +  P+  R H   + + T      +S+P+   +                  +R   +A  
Sbjct: 415 EVDPQ-GRLHTNFNTVGTVSGRMSSSNPNLQNLPRLLPEEVAEKPYLQGIDIRKAFVADP 473

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-------QVT 425
           G   V AD A +E  V A ++G+         G DL+  T   +F V          +  
Sbjct: 474 GYIFVSADYASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQY 533

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           KD R   KV+  AL Y G            G +      L++     E +   + +   +
Sbjct: 534 KDYRQKAKVVNFALIYGGTEFTL---IKNFGFSEEEAKQLIQ--GYFEAYPVVKTWMEEV 588

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                E    +  I    +R+                +L QA  +  ++   ++     D
Sbjct: 589 YRELEEKGFVEYPIYGYIKRM----------------DLPQALRKLPKDKWPLVLNNDPD 632

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
               Y    ++    ++    + V +D                            IVQ  
Sbjct: 633 ARKQYYASLRSCQNALIQGFSAFVVKDA---------------------------IVQ-- 663

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLK 664
                 +    A      +++ VHDEIV    +      + +    M        G+ LK
Sbjct: 664 -----MQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLK 715

Query: 665 AE 666
           AE
Sbjct: 716 AE 717


>gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 352

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 112/371 (30%), Gaps = 52/371 (14%)

Query: 234 RCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    +   L+    L     T+     +T  R L            V ++R        
Sbjct: 3   QLTTAMGEVLYERLKLPHARKTKGKTGYSTDYRELERLAAYHDLPAAVISHRNL------ 56

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                    S+              P   R H   +Q +T    
Sbjct: 57  -------------------------SKLKSTYVDKLATLIDPADGRVHTTFNQTVTATGR 91

Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +S+P+   I         +R+  +A+     + AD + I+ RVLA  +G+    +AF 
Sbjct: 92  LSSSNPNLQNIPIRTPEGRRLRAAFVAAAEHLFLAADYSQIDLRVLAHYSGDPVLQEAFA 151

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             +D++  T A  F V    V+ D R + K +   + Y   A    +    +     TF 
Sbjct: 152 HDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGMSAFGLAEQLRCSRKEAQTF- 210

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                    + + +         +   E A  D ++GT  +R ++   + +S        
Sbjct: 211 --------IDRYFELYQGVHRFMQEIVEQARRDGWVGTLLQR-RRPLPEINSGNKMRREF 261

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNT 582
             +    T   G A    K   +      ++ +     +L     L++    +  + +  
Sbjct: 262 AERTAINTPIQGTAADIIKLAAIACDRALREADCRSEALLQIHDELIFEVPQDELAQVGP 321

Query: 583 TTRQLTREYTY 593
             RQ   E   
Sbjct: 322 LIRQAMEEVME 332


>gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6]
 gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6]
          Length = 628

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 116/672 (17%), Positives = 210/672 (31%), Gaps = 163/672 (24%)

Query: 29  CVILFAFGFDDHP----VELWDCVHDPVMPQ----VLKEALENTDVTIVAHNSYFERTVL 80
            +   +    + P    V   D    P + +     L   LEN  +    H+S F  + +
Sbjct: 50  EIQRISLALPNAPSSSTVYTVDIADRPELKESIIGDLAGLLENGRIKKTLHDSKFVLSFI 109

Query: 81  KACFNLDIPIHRWICTLVLAR----------SNGLP----------SALKAVGEALKLSS 120
           +A     +        ++ ++           +G P           +L ++ E   L  
Sbjct: 110 RARAGRKLNFCSIFDVMLASQICWSGYYYLTPSGNPKNPWTKRLVDHSLASLAERH-LGI 168

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
              EEG       C  +    L     P H             D+         L+ ++ 
Sbjct: 169 ILDEEG-------CPAQGAAAL----LPLH-------------DILADLLAKNDLQRVAD 204

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY--GLVSSSRCLEK 238
            E         +   G  +D + A  L    + E       ++      G V+ S   ++
Sbjct: 205 LEFRAAIALVEMEISGIGLDSSGARDLIDQEEDEIIDQIWRMQDEAERKGFVTVSFDGKR 264

Query: 239 LKTWLF-----------LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           L  +L             + G    + T+    + L++      +A+     R R     
Sbjct: 265 LCCYLNPDRQEDVMAFLAKRGYRPAN-TKAEVLKSLAAAGCSFAEAL----MRYRHLSYN 319

Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +L LN  +E ++  DGR+     F   S TGR S      Q +PR               
Sbjct: 320 LLFLNKWLEKVHPLDGRVHPQY-FQIPSSTGRISSRHPNAQQIPRRGDDAP--------- 369

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                            +R     + GK+ V ADL+ IE R++A ++G++   +AF  G 
Sbjct: 370 ----------------AIRRLFRPAAGKRYVKADLSNIELRIMARISGDEAMQEAFIKGI 413

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           DL+  T +R       +VT  QR   K M   L Y G AK+ Q                 
Sbjct: 414 DLHRLTASRISGTPFEEVTDSQRQAAKAMNFLLIYGGSAKSLQ----------------- 456

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                   W    ++  ++  +  E  +E  F                            
Sbjct: 457 --------WRILSDYGEFICLDETEERLERFF---------------------------C 481

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
           ++    E  K  +++    +   +    +    L L + R+++ R     R     T  +
Sbjct: 482 SYPGVREWQKMQLSQMSYTMQHHFHNCVRGFFSLPLTATRTILGRRRIWPRFGAGITASK 541

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDT-DE 641
                    ++     Q    D++   M    +        I+ ++HDEI+ E P+   E
Sbjct: 542 F--------QMYNTPCQGTGADLIKLVMAEVYEKLSDEEARIIGSIHDEIILEVPEDRAE 593

Query: 642 FNASMLYHLMTS 653
             A+ L  +M  
Sbjct: 594 EYAARLKEIMER 605


>gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01]
 gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01]
          Length = 682

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/488 (18%), Positives = 156/488 (31%), Gaps = 80/488 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL--ENTDVTIVAH 71
           +DL   G+  +     ++  A       V ++D      +P  +   L        +V H
Sbjct: 152 VDLETTGLDPHTSRPRLLSLAMP---GAVVVFDLFG---VPLEVFYPLFSREEGPLLVGH 205

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           N               +    W  +       GL   +         +  +M   K+L  
Sbjct: 206 NLK-------FDLLFLLKAGVWRASGKRLWDTGLAHQVL-------HAQARMPALKDLAP 251

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK---------RLEPLSSKE 182
              K        D   P   E       Y   D  V   +++         RLE +   E
Sbjct: 252 GLDKTLQTS---DWGGPLSSEQ----VAYAGLDAAVPLVLYREQRERARTLRLEKVLEVE 304

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
           +        +  +G      L     +  + E   L  E   L +G+  +     ++  +
Sbjct: 305 RRALPAVAWMELKGVPFAPELWEEAAREAEREAEALRGE---LPFGV--NWNSPAQVLAY 359

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           L  E GL L D  E T            P   ++   R  A R +            + G
Sbjct: 360 LKGE-GLDLPDTREDTLAGYRE-----HPLVAKLLRYREAAKRVSTYGKEWAKHLNPATG 413

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R+  + Q +GA  TGR +      Q +PR                     DP        
Sbjct: 414 RIHPSWQQIGA-ETGRMACRKPNLQQVPR---------------------DP-------- 443

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R      EG+ ++ AD + IE R+ A +A E   L+AF  G+DL+  T +        
Sbjct: 444 ALRRAFRPKEGRVMLKADFSQIELRIAAAIAKEGRMLRAFREGKDLHALTASLVLGKPLE 503

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENF 481
           +V K+ R + K +   L Y  GA+  ++ A T  G+ L         ++    +   + +
Sbjct: 504 EVGKEDRQLAKALNFGLLYGLGAEGLRRYALTAYGVKLTLEEAQKLRDAFFRAYPALKRW 563

Query: 482 CRWMQENH 489
            R   E  
Sbjct: 564 HRSQPEGE 571



 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 588 TREYT--YGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTD 640
            R  T  Y  KL    VQ    D L   +    +      G   VL VHDE+V E P+  
Sbjct: 580 RRRTTDRYTEKL-NTPVQGTGADGLKMALALLWENRGLLWGAFPVLAVHDEVVLEAPEEG 638

Query: 641 EFN-ASMLYHLMTSNPSWAKG--LPLKAEG 667
                  L  LM        G  +P++ EG
Sbjct: 639 AKEYLETLTALMRRGMEEVLGGAVPVEVEG 668


>gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023]
          Length = 155

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 8/146 (5%)

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYLNTTTRQLTR 589
           AI  R+ +    +        L + LPSGR+L Y          G+   Y   T +   +
Sbjct: 10  AISTRESQKYKGLTFYYKAGILFIKLPSGRNLAYFRAKLVPGKYGHQICYEGVTDKGWRK 69

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
           +YTYGGKL ENIVQA++RD LA  +     AG   V+ VHDE + E P++ E +   L  
Sbjct: 70  QYTYGGKLVENIVQAIARDCLAVSLRRIEDAGISTVMHVHDEAITEVPES-ESSVDKLNA 128

Query: 650 LMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++    SWA GLPL+ +G+ S  Y K
Sbjct: 129 ILAEPISWAPGLPLQGDGFSSDFYMK 154


>gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish]
 gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish]
          Length = 605

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 137/690 (19%), Positives = 226/690 (32%), Gaps = 152/690 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAH 71
            D+   G+ +  E  CV  FA+ +DD  +   L D V + +  Q   +  E  +  I  H
Sbjct: 39  TDIETPGLDRAFEINCVT-FAWRWDDGSIHSVLLDPVGNTLHRQACIDLYERAETII-LH 96

Query: 72  NSYFERTVLKAC--FNL--DIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKME 124
           N+ F+   L+    F    +I I++ + TL+LAR       +     AL    L     +
Sbjct: 97  NAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFALPDVTVSKSLTALSIRYLGLSDFK 156

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           +G ++       +T +  Y+           ++      D   T     +LEPL      
Sbjct: 157 DGMKVAFAAAGYKTIQAGYEGMSIESP----IYRVGAMADTIATL----KLEPLLRAMAI 208

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-----SSSRCLEKL 239
            W LD    D G   D      L     V R  L +  + L             +  E++
Sbjct: 209 NWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEKDAERI 268

Query: 240 K-TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL----KLNTL 294
           +   L    GL             L S  +L     +     ++A++  +      L T 
Sbjct: 269 QHEALLAAHGLEGGAGKGKKIVEYLESIGQLPANWPRTPTGGLKATKDLLDGFDHPLTTA 328

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT-HLPTSITSD 353
              +    ++ G L     ++  R +             R H ++  +          S 
Sbjct: 329 QRKLAEIDKVLGYL-----TKVERQAS---------VTGRCHPQVGVLGASATGRMAYSM 374

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           P+  Q   D     +I  +G+ L   D + IE   +A MAG+   L  FE GEDLY    
Sbjct: 375 PELQQFPKDARP--IITDDGQGLTSIDWSQIEPVTMANMAGDVGFLIPFEAGEDLYEPI- 431

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            RS  +    +TK+ R I KV+ LA  Y  G                             
Sbjct: 432 QRSCGLP---MTKEGRDIAKVVLLATMYGMGVNGL-------------------ALKINH 469

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             E A+   R M    PE A                W  +   +++             +
Sbjct: 470 TVESAQQIRRQMLAAMPESA---------------KWMARVQGIAD-------------Q 501

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
            G+ I A  R                 +LP     V+R                      
Sbjct: 502 YGRIITAAGR-----------------ILPVDDGGVFR---------------------- 522

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV--HDEIVCETPDTDEFNASMLYHLM 651
                   VQ  + D+L + ++   +AG    L V  HDE++  TP  DE     +  +M
Sbjct: 523 ---AVNYTVQGSALDVLHDTIVRMERAGLADELHVAMHDELIVSTPVADE-----VQQIM 574

Query: 652 TSNPS----WAKGLP-LKAEGYESKR-YRK 675
            + P     WA  +P L+ +  + +  ++K
Sbjct: 575 LTPPDFLIRWAGRVPVLRTDAADMEHAWKK 604


>gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45]
 gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45]
          Length = 728

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 124/782 (15%), Positives = 224/782 (28%), Gaps = 212/782 (27%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------------- 50
           +D ET             Y  D    L        P E W    D               
Sbjct: 27  LDTETYGSDPFN-----LYLPDF--RLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLPR 79

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV------------ 98
             + Q + EAL+   V    HN+ ++R VL    ++ +       T+V            
Sbjct: 80  EAVRQAVLEALKRPVVY---HNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLG 136

Query: 99  ---LARSN-GL--------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
               A++  GL        P  L    +   +S       K++     K +  + L D  
Sbjct: 137 LKEWAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKL--KPDWLQRLKDAF 194

Query: 147 KPNH--------------------------------REAWRLF-----GEYCKGDVTVTR 169
              H                                   +RLF       Y   D   T 
Sbjct: 195 LAVHNGGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTL 254

Query: 170 EIFKRLE---PLSSKEQELW-YLDQTIND-------RGYCVDVALAHTLNQIVDVERTKL 218
            +++ +E    L  K   L+  ++  +ND       RG  VD      + + +     + 
Sbjct: 255 ALWEHVEVFFELHPKLHALYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEK 314

Query: 219 DQELESL--------TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSN 266
            QE + L             +     ++L T L+   G  +     +   +T +  ++  
Sbjct: 315 AQEAQELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKL 374

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
             L+P+  +         ++ + K    +EA  +           G  +           
Sbjct: 375 LTLSPKDKR---------KAPLAK--AFLEAKQA---------HEGLKKLLSTYTDSILE 414

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--------------SDCVRSCVIASE 372
           +  P+  R H   + + T      +S+P+   +                  +R   +A  
Sbjct: 415 EVDPQ-GRLHTNFNTVGTVSGRMSSSNPNLQNLPRLLPEEVAEKPYLQGIDIRKAFVADP 473

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-------QVT 425
           G   V AD A +E  V A ++G+         G DL+  T   +F V          +  
Sbjct: 474 GYIFVSADYASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQY 533

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           KD R   KV+  AL Y G            G +      L++     E +   + +   +
Sbjct: 534 KDYRQKAKVVNFALIYGGTEFTL---IKNFGFSEEEAKQLIQ--GYFEAYPVVKTWMEEV 588

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                E    +  I    +R+                +L QA  +  ++   ++     D
Sbjct: 589 YRELEEKGFVEYPIYGYIKRM----------------DLPQALRKLPKDKWPLVLNNDPD 632

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
               Y    ++    ++    + V +D                            IVQ  
Sbjct: 633 ARKQYYASLRSCQNALIQGFSAFVVKDA---------------------------IVQ-- 663

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLK 664
                 +    A      +++ VHDEIV    +      + +    M        G+ LK
Sbjct: 664 -----MQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLK 715

Query: 665 AE 666
           AE
Sbjct: 716 AE 717


>gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 552

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 49/299 (16%)

Query: 161 CKGDVTVT----REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              D  +      +I  ++   +  +  L  L   +  RG  ++ +    ++  +  +  
Sbjct: 289 NAYDTQMEKFKNDKILYKIA--TDFDFPLAPLLFKMEKRGVKINTSYLADMSHEIGKKYE 346

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTP 271
           +L Q++  +  G   +     +L   LF++  L    + +     +T Q+ L+  + L P
Sbjct: 347 ELQQKIFDIA-GYNFNIASPAQLSDMLFIKLQLPTTGIKKGKTGYSTGQKELNKLRGLHP 405

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             I++       ++     ++ L + ++                               +
Sbjct: 406 -VIELIEQTRELAKLKNTYVDALPKLVD-------------------------------K 433

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEA 386
             R H   +Q +       ++ P+   I     +   +R+  IA E   LV AD +  E 
Sbjct: 434 NYRLHTTFNQDVVSTGRLSSTHPNLQNIPIRSTLGKKIRNAFIADEDNILVSADYSQFEL 493

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
           R+ A MAG++  +  F    D++  T +  + +   QVT +QR   KV+   + Y    
Sbjct: 494 RLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVTSNQRRNAKVINFGVLYGMSP 552


>gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40]
 gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40]
          Length = 703

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 123/710 (17%), Positives = 236/710 (33%), Gaps = 117/710 (16%)

Query: 6   IDFETRSPIDLTKCG-ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           ID ET    D  K G +  Y+    + L    +D + + L+         +   + L + 
Sbjct: 14  IDIETW---DGKKGGSLDPYSG--KIALVQIAYDRNNIVLYRPW--EKNFEEALKVLSDK 66

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSALKAVGEALKLSSQK 122
           DV  V HN  F+   LK  +  +I       T++ ++    GL      + E L+     
Sbjct: 67  DVLKVGHNLKFD---LKFFYMNNIYPEPIFDTMIASQMIYAGLDEP-DEISEVLEALKDD 122

Query: 123 MEE---------GKELIA--RFCKGETHECLYDRN--KPNHR-------EAWRLFGEYCK 162
           +           GK+     +F          + N   P          E      EY  
Sbjct: 123 LTTEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGGELSEAQKEYAI 182

Query: 163 GDV----TVTREIFKRLEPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
            DV     ++ E++K+++ L+ +     E +   +   +   G  +D        +  + 
Sbjct: 183 NDVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTGVKIDKEGWKKKMEKENQ 242

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           E  +L++EL+   Y    S +  EK+   LF +      +L        +     ++   
Sbjct: 243 ELLELEKELKKEIYEKFVSKQS-EKMMVGLFEDAEYEKINLNSPLQMAKIFGLPNVSKLT 301

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           ++   +        + K     +      +L  T       +             L   +
Sbjct: 302 LEKIED------PTIKKYVEYKKKA----KLVTTYSKEYLEK-------------LTENN 338

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           R   +  Q  T      +S+P+ LQ +    +  + A EG   V AD + +E R+LA+++
Sbjct: 339 RLMSDYSQTKTATGRISSSNPN-LQNVPSWFKRYITAEEGYVPVFADYSQVELRILAYLS 397

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           G++  + +    +D++     + + + P Q V  + R   K +  A+ Y   A       
Sbjct: 398 GDEAMIDSC-NSKDMHSENARKIYKIPPDQPVPPELRKKAKTVSFAIPYGSSAYGLVVRG 456

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL-------FIGTACER 505
             + L     A     NS P+  E  E   +  Q      A+  +               
Sbjct: 457 MFSSLAEAEEAIEGFFNSFPKVKEFLEKSAKSAQNGITRDALGRVRNYKKIYISEDEKGA 516

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           +K    +  S +S+         + + ++   I     + + L     +K          
Sbjct: 517 LKILMFRLPSGISKDEFIKEVLEKNSFKDAAKIFGMDEQMLQLAISAYEK---------- 566

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
                             T++L +    G     + +QA S  I    M++     +  G
Sbjct: 567 ------------------TKKLAKIAREGQ---NHPIQATSASITKTAMVDLLEYLSMTG 605

Query: 622 Y-DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN-PSWAKGL--PLKAE 666
           Y  + LTVHD I  E      F+A   +  +M    P    G+  P+  E
Sbjct: 606 YGYMTLTVHDSIFFEIKKEFIFDALPKIKEIMEQAGPKVVPGIITPVDVE 655


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/551 (15%), Positives = 160/551 (29%), Gaps = 136/551 (24%)

Query: 160  YCKGDVTVTREIFKRLE---------PLSSKEQELWYLDQTINDRGYCVDV----ALAHT 206
            Y   D  V   + +RL+          +   E         +   G  ++      L   
Sbjct: 1760 YAARDAAVMLPLQQRLQRKLEAYDLQEVMDVEMRCLRPVVAMELNGMQIEHARWKELEAH 1819

Query: 207  LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQ 260
            L +     R +L  EL         +    +++   L    G+           +     
Sbjct: 1820 LRKEEVKARKRLAAELHV--DETTVNFNSQKQMLDAL-RAIGIPSPPPDRPASRSRGARP 1876

Query: 261  RVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
               S  + L   Q  ++ +  ++ +    L   T   A+ +         +  A++    
Sbjct: 1877 SAFSEQRGLGFDQPAELEDTLLKDTSDGTLARLTQYPAVQA------LRDYRKAAKAITT 1930

Query: 320  SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-DCVRSCVI-----ASEG 373
                 P        + H  L Q            P+  QI      R+C +     A   
Sbjct: 1931 FVDKLPQHINSVTGKIHCSLHQCGAGSGRFSCDSPNLQQIPRERRFRACFVPSAKVAGRP 1990

Query: 374  KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             K ++AD + IE R+ A +A ++  ++A++ GEDL+  T +   N   + ++K  R + K
Sbjct: 1991 GKFIIADFSQIELRIAADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQLAK 2050

Query: 434  VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
             +   L                G++ + F     +    +                    
Sbjct: 2051 AVNFGLI--------------YGMSADRFRGYASSAYGVQMTPQEAR------------- 2083

Query: 494  IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                            +   ++ ++  W++  +A     E  +    R  R     Y   
Sbjct: 2084 -----------AFHAKYFSSYAGITR-WHQRQKA-----EQPRETRTRAGRRALFDYFAF 2126

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
             K           SL Y                               +Q  S DI  E 
Sbjct: 2127 TK-----------SLNYP------------------------------IQGTSADITKES 2145

Query: 614  MMNATKA----GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKG------LP 662
            ++         G  +V+ VHDEI+ E P D  E    +L   M      A G      +P
Sbjct: 2146 LVRLQDKLAPLGGRLVMCVHDEIIAEVPEDKAEEGLRILIETME-----AAGNKFLRFVP 2200

Query: 663  LKAEGYESKRY 673
              AEG  +  +
Sbjct: 2201 CVAEGAIADSW 2211



 Score = 44.0 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 14   IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALENTDVTIVA 70
            +D+   G+  Y+    V L      D P  L+D    PV    L+     L +  +  V 
Sbjct: 1530 VDVETTGLDPYS--ARVRLLQLALPDFPTLLFDLFALPVSSPSLRAVRLLLASPRIRKVF 1587

Query: 71   HNSYFERTVLKA 82
            HN  F+   L A
Sbjct: 1588 HNGKFDLCFLAA 1599


>gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 300

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 99/279 (35%), Positives = 132/279 (47%), Gaps = 43/279 (15%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           L D+ + T +R L     L     ++ + R +AS ++  K   L+   + DGRLRGTLQF
Sbjct: 13  LPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQF 71

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCV 368
            GASRTGRW+G +F P NLPRP+ S   +   I  +          D + + S  +RSC+
Sbjct: 72  NGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCL 131

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------------------- 402
           IA   KKLVVADL+ IE RVLAW+AGE  KL+AF                          
Sbjct: 132 IAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHSGEAITHGALRG 191

Query: 403 --------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
                           G+D+Y   YA SF +AP  VTK QR IGKV ELALGY GG  AF
Sbjct: 192 APITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAF 251

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
              A+   ++L   A         +         + ++ 
Sbjct: 252 AAFAAMYHIDLEAMAEQAALPPLLDTAARPFPHMKLLRR 290


>gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50]
          Length = 263

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 101/313 (32%), Gaps = 79/313 (25%)

Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                ++DP+   I         +R   IA E   +V AD + IE R++A ++ ++  L 
Sbjct: 1   TGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLT 60

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F +    VT +QR   K +   L Y   A     +A    +   
Sbjct: 61  AFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQLNIPRK 117

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                           +A+ +     E +P                             +
Sbjct: 118 ----------------EAQKYMDLYFERYP----------------------------GV 133

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +   Q  E G                        +    GR L   D+ ++    
Sbjct: 134 LEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIKSSNGAR 170

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET-PDT 639
                +        G   + I +A+   I  +  + A +    +++ VHDE+V E   D 
Sbjct: 171 RAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVFEVHKDD 227

Query: 640 DEFNASMLYHLMT 652
            +  A  ++ LM 
Sbjct: 228 VDAVAKQIHQLME 240


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 156/527 (29%), Gaps = 128/527 (24%)

Query: 175  LEPLSSKEQELWYLDQTINDRGYCVDV----ALAHTLNQIVDVERTKLDQELESLTYGLV 230
            L+ +   E         +   G  +D      L   L +  +  R +L  EL      + 
Sbjct: 2149 LQEVMDVEMRCLRPVVAMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDENTVN 2208

Query: 231  SSSRCLEKLKTWLFLETGLH------LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
             +    +++   L    G+        E  T  +              A +V +  ++ +
Sbjct: 2209 FN--SQKQMLDAL-RAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKDT 2265

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                L   +   A+ +         +  A++         P        + H  L Q   
Sbjct: 2266 SDGTLARLSQFPAVQA------LRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGA 2319

Query: 345  HLPTSITSDPDPLQIIS-DCVRSCVI-----ASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                     P+  QI      R+C +     A    K ++AD + IE R+ A +A ++  
Sbjct: 2320 GSGRFSCDSPNLQQIPRERRFRACFVPSKTVAGRPGKFIIADFSQIELRIAADLACDERM 2379

Query: 399  LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            ++A+  GEDL+  T +   N  P+ ++K  R + K +   L                G++
Sbjct: 2380 IEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLI--------------YGMS 2425

Query: 459  LNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + F     +        ++A +F                                +  +
Sbjct: 2426 ADRFRGYASSAYGVEMSLQEARDFHAKYF-------------------------SSYPGI 2460

Query: 518  SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +  W+   +A     E  +    R  R     Y    K           SL Y       
Sbjct: 2461 TR-WHRRQKA-----EQPRETRTRAGRRALFEYFAFTK-----------SLNYP------ 2497

Query: 578  SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
                                    +Q  S DI  E ++         G  +V+ VHDEI+
Sbjct: 2498 ------------------------IQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEII 2533

Query: 634  CETPDT-DEFNASMLYHLMTSNPSWAKG------LPLKAEGYESKRY 673
             E P+   E    +L   M      A G      +P  AEG  +  +
Sbjct: 2534 AEVPEEKAEEGLRVLIDTME-----AAGNKYLRFVPCVAEGAIADSW 2575



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 14   IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALENTDVTIVA 70
            +D+   G+  ++    + L      D P  L+D    PV    L+     L +  +  V 
Sbjct: 1878 VDVETTGLDPFS--ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVF 1935

Query: 71   HNSYFERTVLKA 82
            HN  F+   L A
Sbjct: 1936 HNGQFDLCFLAA 1947


>gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
 gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
          Length = 160

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/164 (43%), Positives = 90/164 (54%), Gaps = 11/164 (6%)

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDV 573
           +  W  L  A    I + +            + M+  +  L + LPSGR L Y     D 
Sbjct: 1   AAFWKALQFAATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDE 55

Query: 574 GNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
               SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDE
Sbjct: 56  HGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDE 115

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 116 MITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 159


>gi|224043967|ref|XP_002187783.1| PREDICTED: similar to polymerase (DNA directed), theta [Taeniopygia
            guttata]
          Length = 2588

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 183/568 (32%), Gaps = 105/568 (18%)

Query: 150  HREAWRLFGEYCKGD-VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            +R A      +   D +    +     +  S  E    Y    +   G         T  
Sbjct: 2040 YRAAIESVLVFNVMDQLHKELQKENLTDVFSKVEMPTHYCLSLLELNGIGFSTTAYETQK 2099

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---------------- 252
            Q++  + ++++ +   L  G   S    + +   LFLE  L                   
Sbjct: 2100 QVMQAKLSQIETKAYQLA-GHSFSLTSPDDIAEVLFLELKLPQNGDVKVQGNKKTLGYTR 2158

Query: 253  -----------DLTETTCQRVLSSNKKLTPQAIQVFNNRMR--ASRSAVLKLNTLVEAMN 299
                           +T + VL   K L P    +   R    A    V  L       +
Sbjct: 2159 RATAKGNRVRLSKQFSTTKDVLEKLKTLHPLPGLILEWRRINNAITKVVYPLQREKRLNS 2218

Query: 300  SDG--RLRGTLQFLGASRTGRWSGCVFPPQNLPR--------------PSRSHEELDQII 343
            + G  R+    Q   A  TGR S      QN+PR              PS++H  ++   
Sbjct: 2219 ALGMERIYPISQTHTA--TGRVSFTEPNIQNVPRDFEIEMPTVVEESPPSQAHGNVNSHA 2276

Query: 344  THLPT---SITSDPDPLQIISDCV------------RSCVIASEGKKLVVADLAGIEARV 388
                      +  P+ L++ +  +            R   +   G  ++ AD + +E R+
Sbjct: 2277 ALGGRCRKRSSILPNGLKVQAANISEERGIQFSVSMRHAFVPFPGGLILAADYSQLELRI 2336

Query: 389  LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            LA ++ +   ++A   G D++ +  A    + P  V +  R   K +   + Y  GA   
Sbjct: 2337 LAHLSCDCRLIQALNGGTDVFKSIAAEWKMIDPEAVGERTRQQAKQICYGIIYGIGA--- 2393

Query: 449  QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            + +    G++ N  A+ +++  +   +   + F R    +       D F+ T   R + 
Sbjct: 2394 KSLGEQMGIDENEAANYIESFKSR--YTGVQKFLRETVRSCRR----DGFVQTILGRRRY 2447

Query: 509  AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                K        +   QA   T++   A I +               N+   L +  S+
Sbjct: 2448 LPAIKDPNPYSKAHAERQAVNTTVQGSAADIVKTATV-----------NIQKRLEAFPSV 2496

Query: 569  VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                     S+    T +L+R+   G                   M++  + G+ I L +
Sbjct: 2497 FKSHGHLESSFQRDKTGRLSRKRNTG-------------------MLHPIRGGFFI-LQL 2536

Query: 629  HDEIVCETPDTDEFNASMLYHL-MTSNP 655
            HDE++ E  + D    + +    M +  
Sbjct: 2537 HDELLYEVAEDDVIQVAQIVKREMENAI 2564


>gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ)
            [Danio rerio]
          Length = 2239

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/520 (15%), Positives = 160/520 (30%), Gaps = 101/520 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G    +A       ++  + + L+ +   L  G   S    E +
Sbjct: 1740 KVEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKLSALESQAYQLA-GHSFSLTSPEDV 1798

Query: 240  KTWLFLETGLHLE------------------------DLTETTCQRVLSSNKKLTPQAIQ 275
               LFLE  L                               +T + VL   K L P    
Sbjct: 1799 AEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKLKPLHPLPGV 1858

Query: 276  VFNNRMRASRSAVLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            +   R   +    +      E    +     R+    Q   A  TGR S      QN+P+
Sbjct: 1859 ILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPISQSHTA--TGRVSFTEPNIQNVPK 1916

Query: 332  PSRSH----------------------EELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
                                        ++++ +  L       PD     S  +R   +
Sbjct: 1917 DFEIQMPTLIEESQTSQNGGSKMWCKRTKINRQLAPLLKVSDKSPDKGMQFSVSMRHAFV 1976

Query: 370  ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
               G  ++  D + +E R+LA ++ ++  L    +G D++ +  A    V PA V  + R
Sbjct: 1977 PFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIAAEWKMVDPASVDDNMR 2036

Query: 430  AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
               K +   + Y  GA   + +    G+  N  A  ++T  +   +   +NF R   +  
Sbjct: 2037 QQAKQICYGIIYGMGA---KSLGEQMGIEENDAACYIETFKSR--YNGIQNFLRETVQKC 2091

Query: 490  PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
             ++      +G   +R     +  +  +    +   QA   T++   A I +    +  +
Sbjct: 2092 GKNGYVKTLLGR--KRFLPGIKDSNVYIKS--HAERQAVNTTVQGSAADIVK----LATI 2143

Query: 550  YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
             +++        +P+  S  +  +     + N                            
Sbjct: 2144 NIQRRIEEAFPGVPT--SHQHPSIRLGGRHRNQ--------------------------- 2174

Query: 610  LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                     + GY I L +HDE++ E  + D    + +  
Sbjct: 2175 -----FRPLRGGYFI-LQLHDELIYEVAEEDVIQVAQIVK 2208


>gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus]
 gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus]
          Length = 605

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/679 (19%), Positives = 220/679 (32%), Gaps = 147/679 (21%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAH 71
            D+   G+ +  E  CV  FA+ +DD  +   L D V + +  Q   +  E  +  I  H
Sbjct: 39  TDIETPGLDRAFEINCVT-FAWRWDDGSIHSVLLDPVGNTLHRQACIDLYERAETII-LH 96

Query: 72  NSYFERTVLKAC--FNL--DIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKME 124
           N+ F+   L+    F    +I I++ + TL+LAR +     +     AL    L     +
Sbjct: 97  NAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLTALSIRYLGLSDFK 156

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           +G ++       +T +  Y+           ++      D   T     +LEPL      
Sbjct: 157 DGMKVAFAAAGYKTIQAGYEGMSIESP----IYRVGAMADTIATL----KLEPLLRAMAI 208

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-----SSSRCLEKL 239
            W LD    D G   D      L     V R  L +  + L             +  E++
Sbjct: 209 NWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEKDAERI 268

Query: 240 K-TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           +   L    GL             L+   +L     +     ++A++  +   +  +   
Sbjct: 269 QHEALLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGFDHPL--- 325

Query: 299 NSDGRLRGTLQFLGASRTGRW--SGCVFPPQNLPRPSRSHEELDQIIT-HLPTSITSDPD 355
                   T+     +   +          Q      R H ++  +          S P+
Sbjct: 326 --------TIAQRKLAEVDKVLGYLTKVERQ-AAVTGRCHPQVGVLGASATGRMAYSMPE 376

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
             Q   D     +I  +G+ L   D + IE   +A MAG+   L  FE GEDLY     R
Sbjct: 377 LQQFPKDARP--IITDDGQGLTSIDWSQIEPVTMANMAGDVGFLIPFEAGEDLYEPI-QR 433

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           S  +    +TK+ R I KV+ LA  Y  G          T                    
Sbjct: 434 SCGLP---MTKEGRDIAKVVLLATMYGMGVNGLALKIKHT-------------------V 471

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
           E A+   R M    PE A                W  +   +++             + G
Sbjct: 472 ESAQQIRRQMLAAMPESA---------------KWMARVQGIAD-------------QYG 503

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
           + I A  R                 +LP     V+R                        
Sbjct: 504 RIITAAGR-----------------ILPVDDGGVFR------------------------ 522

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLT--VHDEIVCETPDTDEFNASMLYHLMTS 653
                 VQ  + D+LA  ++   +AG    L   +HDE++ +T  +DE     +  +M +
Sbjct: 523 -AVNYTVQGSAYDVLASTIVRMERAGLGDHLQLAMHDELIVDTEVSDE-----VQQIMLT 576

Query: 654 NPS----WAKGLP-LKAEG 667
            P     WA  +P L+ + 
Sbjct: 577 PPDFLIRWAGRVPVLRTDA 595


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/507 (16%), Positives = 157/507 (30%), Gaps = 81/507 (15%)

Query: 10   TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVT 67
            T   +D+   G+  +  D  + L     +++PV ++D  +     +   L+E L+N  V 
Sbjct: 1310 THCGLDIETTGLEVF--DEKIRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVV 1367

Query: 68   IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
             +  N  F+   L    + +  +     T + ++                L   K   G 
Sbjct: 1368 KIIQNGKFDAKFL---MHNNFQVDNIFDTYIASKL---------------LDKNKNMYGF 1409

Query: 128  ELIARFCKGETHECLYDRNKPNHREAWRLFGE------YCKGD---------VTVTREIF 172
            +L     K        D+ + N    W           Y   D            +    
Sbjct: 1410 KLNNIVEKYL--NVTLDKQQQNS--VWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICK 1465

Query: 173  KRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            + +E ++  E +  L   D  +N  G  VD+         +  E      +L++      
Sbjct: 1466 ENMETVNDIENKCILPICDMELN--GITVDLESLKKSTNEILSELNTETSKLKAELKDEE 1523

Query: 231  SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +    +++   L       + D++    +    SN K      +V   R          
Sbjct: 1524 ININSQQQVLKALQNNN---VRDISNKLIENTSDSNLKNFLNHKEVVLLR---------- 1570

Query: 291  LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                               +    +         P     + ++ H   +Q+ T      
Sbjct: 1571 ------------------NYRRLYKLYSAFYLKLPQHINKKTNKIHTTFNQLKTFSGRFS 1612

Query: 351  TSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            +  P+  QI     +R   I  +    ++AD   IE ++ A +  +   LKA+    DL+
Sbjct: 1613 SEKPNLQQIPRQKNIREIFIPQKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLH 1672

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKT 468
              T +       A V K+ R I K +   L Y       +  A+T   LN+N    L   
Sbjct: 1673 TLTASIITKKPIADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCL--- 1729

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIE 495
                  +E  +   RW  +      +E
Sbjct: 1730 YFYNSFFEHYKGIYRWHNQIKQIRGLE 1756



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 596  KLTENIVQAVSRDILAEGMMNATKAGYDI----VLTVHDEIVCETPDT-DEFNASMLYHL 650
            K     VQ    DIL   ++   K    I    +L VHDEI+ E      E    +L   
Sbjct: 1774 KALNYPVQGTCADILKLSLVELYKNLKPIHGKIILCVHDEIIIEVDKKYQEDALKILVES 1833

Query: 651  MT 652
            M 
Sbjct: 1834 ME 1835


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/510 (17%), Positives = 165/510 (32%), Gaps = 87/510 (17%)

Query: 10   TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVT 67
            T   +D+   G+  +  D  + L     +D+PV ++D  +     +   L+E L+N  V 
Sbjct: 1309 THCGLDIETTGLEVF--DEKIRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVV 1366

Query: 68   IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
             +  N  F+   L    +    +     T + ++                L   K   G 
Sbjct: 1367 KIIQNGKFDAKFL---MHNKFEVANIFDTYIASKL---------------LDKNKNMYGF 1408

Query: 128  ELIARFCKGETHECLYDRNKPNHREAWRLFGE------YCKGD---------VTVTREIF 172
            +L     K        D+ + N    W           Y   D            +    
Sbjct: 1409 KLNNIVEKYL--NVTLDKQQQNS--VWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICR 1464

Query: 173  KRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            + +  ++  E +  L   D  +N  G  VD+    +L++  +   ++L++E   L   L 
Sbjct: 1465 ENMGTVNDIENKCILPICDMELN--GITVDL---ESLSKSTNEILSELNEETSKLKAELK 1519

Query: 231  S---SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
                +    +++   L  +    + D++    +    SN K      +V   R       
Sbjct: 1520 DEEINVNSQQQVLKALQNKN---VRDVSNKLIENTSDSNLKNFLNHREVVLLR------- 1569

Query: 288  VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                  +    +         P     + ++ H   +Q+ T   
Sbjct: 1570 ---------------------NYRRLYKLYSAFYLKLPQHINKKTNKIHTTFNQLKTFSG 1608

Query: 348  TSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
               +  P+  QI     +R   I  +    ++AD   IE ++ A +  +   LKA+    
Sbjct: 1609 RFSSEKPNLQQIPRQKNIREIFIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNI 1668

Query: 407  DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHL 465
            DL+  T +     A A V K+ R I K +   L Y       +  A+T   LN+N    L
Sbjct: 1669 DLHTLTASIITKKAIADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCL 1728

Query: 466  VKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                     +E  +   RW  +     A+E
Sbjct: 1729 ---YFYNSFFEHYKGIYRWHNQIKQMRALE 1755



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 596  KLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHL 650
            K     VQ    DIL   ++   K        I+L VHDEI+ E      E    +L   
Sbjct: 1773 KALNYPVQGTCADILKLSLVELYKNLRPINGKIILCVHDEIIIEVDKKYQEDALKILVES 1832

Query: 651  MT 652
            M 
Sbjct: 1833 ME 1834


>gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 201

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 16/212 (7%)

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375
               P    P   R H       T      +S+P+   I         +R+  I++ G K
Sbjct: 1   TDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHK 60

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +
Sbjct: 61  LISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAI 120

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y   A     +A+   +  +     +K      ++ +     R   E+    A +
Sbjct: 121 NFGIIYGISAF---GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARD 171

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
             ++ T   R     R  +  V  L   L +A
Sbjct: 172 KGYVETIFGRRINYSR--NPLVQSLRARLQRA 201


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 91/514 (17%), Positives = 179/514 (34%), Gaps = 94/514 (18%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQVLKEALENTDVTIVAHNSYFERTVLK 81
           Y  D  V L   G     + + D        + + LKE LE+  +  V HN  F+   L 
Sbjct: 40  YFND-KVRLIQIGTQ-EDIFVIDAFKVERDTLKEFLKEVLESKGI--VGHNLKFDLKFLA 95

Query: 82  ACF--NLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
             F     +    +I + +LA+  N    +L AV  A++L+ +++++  +    + +  T
Sbjct: 96  TNFDVYPKVVFDTFIASKILAKGDNSQKHSLSAV--AVRLTDEEVDKTYQTSPWWVENLT 153

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----RLE------------------ 176
            E +                EY   D+ V R IF+    RL                   
Sbjct: 154 KEQI----------------EYSAKDIEVLRSIFREQVVRLNEEQTHLKSSGETYKVFGV 197

Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             P+++ E        +I   G  +D      L +        L  E +   Y       
Sbjct: 198 VNPVAALEMAFLPCLVSIELSGIPIDEKQLSNLIKNSKTTFQNLYIEFKRKYY---IDPF 254

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLN 292
             +++  +L  + GL L    + +        K  +  P+   + + R    +  + KL 
Sbjct: 255 SPQQVANFLTKKLGLKLPKTEKGSFSSQDVHLKPYEDKPEVKTLLSIRYE--KKTLDKLE 312

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L + +                                + SR + E  QI        + 
Sbjct: 313 ELSKYV--------------------------------KNSRVYGEFKQIGASTGRMSSY 340

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            P+ LQ I   ++S   A +G   ++AD + IE R+ A    ++  +KAF+  +DL+  T
Sbjct: 341 KPN-LQNIPKNLKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKAFQEKKDLHKLT 399

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSA 471
            +        ++TK++R + K +   L Y    K+  + A     +++          + 
Sbjct: 400 ASVITGKDYQEITKEERNLAKAINFGLIYGISPKSLVEYAKNNYDIDITLSQAKTFHENF 459

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
              +   + +   ++    +H  + + + T   R
Sbjct: 460 FNFYPKFKEWHENVKNYLEKH--KFIQVETLLGR 491


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/513 (15%), Positives = 164/513 (31%), Gaps = 82/513 (15%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEAL 61
            ++ D +    +D+   G+  + E+  + L     +++PV ++D  +     +   L++ L
Sbjct: 1460 IYKDIK-YCGLDIETTGLEVFDEN--IRLIQIAVENYPVIIYDMFNINKKDILDGLRKVL 1516

Query: 62   ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            EN ++  +  N  F+   L    + +  I     T + ++                L   
Sbjct: 1517 ENKNIIKIIQNGKFDAKFL---LHNNFKIENIFDTYIASKL---------------LDKN 1558

Query: 122  KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE------YCKGD---------VT 166
            K   G +L     K      + D+ + N    W           Y   D           
Sbjct: 1559 KNMYGFKLNNIVEKYL--NVILDKQQQNS--VWNNSLLNNNQLFYAARDSSCLLKLYKKL 1614

Query: 167  VTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                  + L  ++  E +  L   D  +N  G  VD+         +  E       L+ 
Sbjct: 1615 KEEIKKENLHIVNDIENKCILPICDMELN--GIKVDLENLQKSTNEILNELNIEKDNLKK 1672

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
                   +    +++   L       + D++    +    SN K      ++ + R    
Sbjct: 1673 KLKDENINVNSQQQVLKALQKNN---VRDISNKLIENTSDSNLKNFLNHEEIISLR---- 1725

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                                     +    +         P     + ++ H   +Q+ T
Sbjct: 1726 ------------------------NYRRLYKLYSAFYLKLPLHINTKTNKIHTTFNQLKT 1761

Query: 345  HLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                  +  P+  QI     +R   I ++    ++AD   IE ++ A +  ++  LKA+ 
Sbjct: 1762 FSGRFSSEKPNLQQIPRQKNIREIFIPNDNNIFIIADFKQIELKIAAEITNDEIMLKAYN 1821

Query: 404  TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTF 462
               DL+  T +         + K+ R I K +   L Y       +  A+T  GLN++  
Sbjct: 1822 NNIDLHTLTASIITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLKNYANTYYGLNMSLD 1881

Query: 463  AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L         +E  +   +W  +   + A++
Sbjct: 1882 QCL---YFYNSFFEHYKGIYKWHNQVKQKRALQ 1911



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 596  KLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHL 650
            K     VQ    DIL   ++    N       I+L VHDEI+ E      E    +L   
Sbjct: 1929 KALNYPVQGTCADILKLALVDLYDNLKDINGKIILCVHDEIIIEVNKKFQEEALKILVQS 1988

Query: 651  MT 652
            M 
Sbjct: 1989 ME 1990


>gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio]
          Length = 2593

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/525 (15%), Positives = 161/525 (30%), Gaps = 106/525 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G    +A       ++  + + L+ +   L  G   S    E +
Sbjct: 2089 KVEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKLSALESQAYQLA-GHSFSLTSPEDV 2147

Query: 240  KTWLFLETGLHLE------------------------DLTETTCQRVLSSNKKLTPQAIQ 275
               LFLE  L                               +T + VL   K L P    
Sbjct: 2148 AEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKLKPLHPLPGV 2207

Query: 276  VFNNRMRASRSAVLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            +   R   +    +      E    +     R+    Q   A  TGR S      QN+P+
Sbjct: 2208 ILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPISQSHTA--TGRVSFTEPNIQNVPK 2265

Query: 332  PSRSH---------------------------EELDQIITHLPTSITSDPDPLQIISDCV 364
                                             ++++++  L       PD     S  +
Sbjct: 2266 DFEIQMPTLIEESQTSQNGGSKMWYISASCKRTKINRLLAPLLKVSDKSPDKGMQFSVSM 2325

Query: 365  RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
            R   +   G  ++  D + +E R+LA ++ ++  L    +G D++ +  A    V PA V
Sbjct: 2326 RHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIAAEWKMVDPASV 2385

Query: 425  TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
              + R   K +   + Y  GA   + +    G+  N  A  ++T  +   +   +NF R 
Sbjct: 2386 DDNMRQQAKQICYGIIYGMGA---KSLGEQMGIEENDAACYIETFKSR--YNGIQNFLRE 2440

Query: 485  MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
              +   ++      +G   +R     +  +  +    +   QA   T++   A I +   
Sbjct: 2441 TVQKCGKNGYVKTLLGR--KRFLPGIKDSNVYIKS--HAERQAVNTTVQGSAADIVK--- 2493

Query: 545  DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
             +  + +++        +P+  S  +  +     + N                       
Sbjct: 2494 -LATINIQRRIEEAFPGVPT--SHQHPSIRLGGRHRNQ---------------------- 2528

Query: 605  VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                          + GY I L +HDE++ E  + D    + +  
Sbjct: 2529 ----------FRPLRGGYFI-LQLHDELIYEVAEEDVIQVAQIVK 2562


>gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 297

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 17/249 (6%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADL 381
             PR  R H    Q +       + DP+   I         +RS  +  EG   L+ AD 
Sbjct: 15  INPRDGRIHTTFTQTVAATGRLSSVDPNLQNIPNRNATGRDIRSAFVPGEGFADLLSADY 74

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + +E R++A ++G++  +KAF++G D +    +  + +   +VT DQR   K M   L Y
Sbjct: 75  SQVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAY 134

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                   +     G+     A L         +           E+   +A    +  T
Sbjct: 135 GLSTYGLSQ---QLGIPSKEAAAL------RSRYFQTFGKVHDYLESLVSNARNTGYTQT 185

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLIL 560
              R ++ +    S      +   +        G A    K   + +    +D N N  +
Sbjct: 186 MFGR-RRYFPALTSANRVARDAAERGALNAPIQGTAADIMKIAMIRVDRALRDGNLNSRI 244

Query: 561 MLPSGRSLV 569
           +L     LV
Sbjct: 245 VLQIHDELV 253


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 110/733 (15%), Positives = 211/733 (28%), Gaps = 188/733 (25%)

Query: 6   IDFETRSPID------LTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDP------ 51
           ID ET           + K  +  Y  ++   ++                 H        
Sbjct: 211 IDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMPGN 270

Query: 52  ---VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-------ICTLVLAR 101
               + + L++ LE  D+  +AHN  F+   L+A  ++ +    W       +C      
Sbjct: 271 QIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDTLIWDTMLIHYLCITEEKG 330

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           ++GL        +          E         K +  +       P     W +   Y 
Sbjct: 331 THGLKDLAWLETDMGGYDDALDGE---------KPKGEDEGNYDLIP-----WDILKVYL 376

Query: 162 KGDVTVTREIFKRLEPLSSKEQE---LW--------YLDQTINDRGYCVDVALAHTLNQI 210
             D  VT  + ++  PL  + +E   LW        Y    I   G  VD      L   
Sbjct: 377 ADDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVS 436

Query: 211 VDVERTKLDQELES-------------------LTYGLVSSSR----------------- 234
            + E ++L+ ++                     +   + S++R                 
Sbjct: 437 YEKEISRLEDKMREFPEVVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPS 496

Query: 235 ---------CLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
                      ++L   LF   GL      +    +T    L      +     +   R 
Sbjct: 497 KGGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFR- 555

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +A+      ++ L   ++ D  +  +    G + TGR S      Q  PR   +      
Sbjct: 556 KANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLFQY 614

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                    +                    +G  +V  D + +E R+LA +  +   +  
Sbjct: 615 NFEIKKMFNSRF-----------------GDGGVIVQFDYSQLELRILAVITQDPTLIDL 657

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           + +G DL+    + +F VA  +V+KDQR   K ++  + YQ  A+   +     G+ ++ 
Sbjct: 658 YRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSE 717

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +      + +     + R  +++   H                             
Sbjct: 718 DECEIFIKKYFKRFPKVSKWIRDTKKHVKRH----------------------------- 748

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYL 580
                      +  K +  R R                  LP   S+         R  +
Sbjct: 749 -----------KYVKTLTGRTRN-----------------LPDIDSIDQSKANEAERQAV 780

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           NT  +    + T            +   IL    +  +     I +TVHD IV + P  +
Sbjct: 781 NTPIQGTGSDCT------------LMSLILINQWLRESGLRSRICITVHDSIVLDCPKDE 828

Query: 641 EFNAS-MLYHLMT 652
               +  + H+M 
Sbjct: 829 VLEVAKKVKHIME 841


>gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
          Length = 154

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 88/158 (55%), Gaps = 11/158 (6%)

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSY 579
           +  A    I + +            + ++  +  L L LPSGR L Y     D     SY
Sbjct: 1   MQCAVTDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSY 55

Query: 580 LNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           + T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  
Sbjct: 56  MGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEIITEAD 115

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           D   FNA+ L  LM + P WA+GLPL AEG+E+ RYRK
Sbjct: 116 DNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 153


>gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1]
 gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1]
          Length = 895

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 55/390 (14%), Positives = 123/390 (31%), Gaps = 53/390 (13%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL---TYGLVSSSR 234
               E  L  +   +  +G  +D                +L+++++ +         +  
Sbjct: 482 YEKIELPLVEVLFNMEQKGILIDKVELDKQTARTLFLIEELEEKMKVILKDQISENFNFG 541

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++K  LF + GL       +T +  L     L P  I +     + ++     L   
Sbjct: 542 SPKQIKELLFDQIGLPSNKKQ-STDKEALEKIIHLHP-VINLLLEHRKLNKLYSTYLRGF 599

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + +  D ++                                   +Q +T+     +S+P
Sbjct: 600 EKFIFDDNKVHTIF-------------------------------NQTLTNTGRLSSSEP 628

Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +   I     +    R   I++   K    D + IE RVLA +  E   L  F+   D++
Sbjct: 629 NIQNISVKDELQREARKIFISNNDTKFFSFDYSQIELRVLAQLGQEDTLLNIFKNDRDVH 688

Query: 410 VTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
                + F +    ++T DQR I KV    + Y         +++   +++      +  
Sbjct: 689 AEAARKIFKLEENEEITSDQRRIAKVFNFGIIYGLSDF---GLSNDLKISIPEAKRFIDD 745

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 +     +   +      +   + +      R+       +  V    N +  A 
Sbjct: 746 YYLS--FPKLMTYKNSLINQATVNGYAETYANR--RRIVNELASSNFMVKNFGNRI--AV 799

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
              I+   A I +    +  ++ +  +NNL
Sbjct: 800 NMPIQGTAADILK--VAMNNIHKEFRENNL 827



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDE-FNASMLYH 649
                +Q  + DIL   M N  K   +      +   +HDEI+ E  +++E     ++  
Sbjct: 798 AVNMPIQGTAADILKVAMNNIHKEFRENNLKSFMTAQIHDEIIFEIFESEESLAVKIVEE 857

Query: 650 LM 651
            M
Sbjct: 858 CM 859


>gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis]
          Length = 2435

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 89/558 (15%), Positives = 175/558 (31%), Gaps = 115/558 (20%)

Query: 159  EYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLN 208
                  V V   +  +L  L  K          E    Y    +   G     A   T  
Sbjct: 1895 RAAVESVLV-FHLMDKLSALLQKDNLQDIFHKMEMPNQYCLALLELNGIGFSTAECETQK 1953

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------------ 256
             +++ + ++ + ++  L  G   S  C + +   LFLE  L  +  ++            
Sbjct: 1954 HVMEAKLSETENQIYQLA-GHSFSLTCPDDIAEVLFLELKLPSDGESKMQRGKKTLGYTG 2012

Query: 257  ---------------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV----LKLNTLVEA 297
                           +T + VL   K L P    +   R   +        L+   L+  
Sbjct: 2013 RAVVNGNRVRLSKQFSTTKGVLEKLKALHPLPGLILEWRKITNAITKVIFPLQREKLLNP 2072

Query: 298  MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---------------PSRSHEELDQI 342
            +    R+    Q   A  TGR S      QN+P+                 R H+  +  
Sbjct: 2073 ILGMERIYPVSQTNTA--TGRISFREPNIQNVPKDFEIEMPILVEESPPTQRQHKMFN-A 2129

Query: 343  ITHLPTSITSDPDPLQIISDC-----------VRSCVIASEGKKLVVADLAGIEARVLAW 391
              +     +  P   + +++            +R   +   G  ++ AD + +E R+LA 
Sbjct: 2130 PRNRNRKSSVLPCEPKNLTERLTSKKIPFAVSMRHAFVPFPGGLILAADYSQLELRILAH 2189

Query: 392  MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +  ++  L+A   G D++ +  A    +AP  V  D R   K +   + Y  GA   + +
Sbjct: 2190 LCCDRRLLQALNDGADVFRSIAAEWKMMAPEAVGNDLRQQAKQICYGMIYGIGA---KSL 2246

Query: 452  ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                G++    ++ + +  +   +   + F R   +   +       +G    R     R
Sbjct: 2247 GEQMGVDEKDASYYIDSFKSR--YPGIQKFLRETVKKCNQDGFVQTIMGR--RRYLPTIR 2302

Query: 512  QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            + +        +  +    T+  G A    K   V    ++K    L   + S   L   
Sbjct: 2303 ESNPYKKA---QAERQAVNTVVQGSAADIVKTATVN---IQKQLEALPSAVKSFEHLC-- 2354

Query: 572  DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                     ++T  + +               A  R I+        K G   +L +HDE
Sbjct: 2355 ---------SSTQNKWSGM-------------AEKRQIMYP------KHGGFFILQLHDE 2386

Query: 632  IVCETPDTDEFNASMLYH 649
            ++ E  +      + +  
Sbjct: 2387 LLYEVAEDSMIQVAQIVK 2404


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 157/527 (29%), Gaps = 128/527 (24%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDV----ALAHTLNQIVDVERTKLDQELESLTYGLV 230
           L+ +   E         +   G  +D      L   L +  +  R +L  EL      + 
Sbjct: 274 LQEVMDVEMRCLRPVVAMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDENTVN 333

Query: 231 SSSRCLEKLKTWLFLETGLH------LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    +++   L    G+        E  T  +              A +V +  ++ +
Sbjct: 334 FN--SQKQMLDAL-RAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKDT 390

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
               L   +   A+ +         +  A++         P        + H  L Q   
Sbjct: 391 SDGTLARLSQFPAVQA------LRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGA 444

Query: 345 HLPTSITSDPDPLQIIS-DCVRSCVI-----ASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                    P+  QI      R+C +     A    K ++AD + IE R+ A +A ++  
Sbjct: 445 GSGRFSCDSPNLQQIPRERRFRACFVPSKTVAGRPGKFIIADFSQIELRIAADLACDERM 504

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A+  GEDL+  T +   N  P+ ++K  R + K +   L                G++
Sbjct: 505 IEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLI--------------YGMS 550

Query: 459 LNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            + F     +        ++A +F                            +   +  +
Sbjct: 551 ADRFRGYASSAYGVEMSLQEARDFH-------------------------AKYFSSYPGI 585

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +  W+   +A     E  +    R  R     Y    K           SL Y       
Sbjct: 586 TR-WHRRQKA-----EQPRETRTRAGRRALFEYFAFTK-----------SLNYP------ 622

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
                                   +Q  S DI  E ++         G  +V+ VHDEI+
Sbjct: 623 ------------------------IQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEII 658

Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKG------LPLKAEGYESKRY 673
            E P+   E    +L   M      A G      +P  AEG  +  +
Sbjct: 659 AEVPEEKAEEGLRVLIDTME-----AAGNKYLRFVPCVAEGAIADSW 700



 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALENTDVTIVA 70
          +D+   G+  ++    + L      D P  L+D    PV    L+     L +  +  V 
Sbjct: 3  VDVETTGLDPFS--ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVF 60

Query: 71 HNSYFERTVLKA 82
          HN  F+   L A
Sbjct: 61 HNGQFDLCFLAA 72


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 157/527 (29%), Gaps = 128/527 (24%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDV----ALAHTLNQIVDVERTKLDQELESLTYGLV 230
           L+ +   E         +   G  +D      L   L +  +  R +L  EL      + 
Sbjct: 274 LQEVMDVEMRCLRPVVAMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDENTVN 333

Query: 231 SSSRCLEKLKTWLFLETGLH------LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    +++   L    G+        E  T  +              A +V +  ++ +
Sbjct: 334 FN--SQKQMLDAL-RAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKDT 390

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
               L   +   A+ +         +  A++         P        + H  L Q   
Sbjct: 391 SDGTLARLSQFPAVQA------LRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGA 444

Query: 345 HLPTSITSDPDPLQIIS-DCVRSCVI-----ASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                    P+  QI      R+C +     A    K ++AD + IE R+ A +A ++  
Sbjct: 445 GSGRFSCDSPNLQQIPRERRFRACFVPSKTVAGRPGKFIIADFSQIELRIAADLACDERM 504

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A+  GEDL+  T +   N  P+ ++K  R + K +   L                G++
Sbjct: 505 IEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLI--------------YGMS 550

Query: 459 LNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            + F     +        ++A +F                            +   +  +
Sbjct: 551 ADRFRGYASSAYGVEMSLQEARDFH-------------------------AKYFSSYPGI 585

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +  W+   +A     E  +    R  R     Y    K           SL Y       
Sbjct: 586 TR-WHRRQKA-----EQPRETRTRAGRRALFEYFAFTK-----------SLNYP------ 622

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
                                   +Q  S DI  E ++         G  +V+ VHDEI+
Sbjct: 623 ------------------------IQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEII 658

Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKG------LPLKAEGYESKRY 673
            E P+   E    +L   M      A G      +P  AEG  +  +
Sbjct: 659 AEVPEEKAEEGLRVLIDTME-----AAGNKYLRFVPCVAEGAIADSW 700



 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALENTDVTIVA 70
          +D+   G+  ++    + L      D P  L+D    PV    L+     L +  +  V 
Sbjct: 3  VDVETTGLDPFS--ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVF 60

Query: 71 HNSYFERTVLKA 82
          HN  F+   L A
Sbjct: 61 HNGQFDLCFLAA 72


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 157/527 (29%), Gaps = 128/527 (24%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDV----ALAHTLNQIVDVERTKLDQELESLTYGLV 230
           L+ +   E         +   G  +D      L   L +  +  R +L  EL      + 
Sbjct: 274 LQEVMDVEMRCLRPVVAMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDENTVN 333

Query: 231 SSSRCLEKLKTWLFLETGLH------LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    +++   L    G+        E  T  +              A +V +  ++ +
Sbjct: 334 FN--SQKQMLDAL-RAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKDT 390

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
               L   +   A+ +         +  A++         P        + H  L Q   
Sbjct: 391 SDGTLARLSQFPAVQA------LRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGA 444

Query: 345 HLPTSITSDPDPLQIIS-DCVRSCVI-----ASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                    P+  QI      R+C +     A    K ++AD + IE R+ A +A ++  
Sbjct: 445 GSGRFSCDSPNLQQIPRERRFRACFVPSKTVAGRPGKFIIADFSQIELRIAADLACDERM 504

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A+  GEDL+  T +   N  P+ ++K  R + K +   L                G++
Sbjct: 505 IEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLI--------------YGMS 550

Query: 459 LNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            + F     +        ++A +F                            +   +  +
Sbjct: 551 ADRFRGYASSAYGVEMSLQEARDFH-------------------------AKYFSSYPGI 585

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +  W+   +A     E  +    R  R     Y    K           SL Y       
Sbjct: 586 TR-WHRRQKA-----EQPRETRTRAGRRALFEYFAFTK-----------SLNYP------ 622

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
                                   +Q  S DI  E ++         G  +V+ VHDEI+
Sbjct: 623 ------------------------IQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEII 658

Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKG------LPLKAEGYESKRY 673
            E P+   E    +L   M      A G      +P  AEG  +  +
Sbjct: 659 AEVPEEKAEEGLRVLIDTME-----AAGNKYLRFVPCVAEGAIADSW 700



 Score = 41.7 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALENTDVTIVA 70
          +D+   G+  ++    + L      D P  L+D    PV    L+     L +  +  V 
Sbjct: 3  VDVETTGLDPFS--ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVF 60

Query: 71 HNSYFERTVLKA 82
          HN  F+   L A
Sbjct: 61 HNGQFDLCFLAA 72


>gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer]
 gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer]
          Length = 605

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 131/679 (19%), Positives = 219/679 (32%), Gaps = 147/679 (21%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAH 71
            D+   G+ +  E  CV  FA+ +DD  +   L D V + +  Q   +  E  +  I  H
Sbjct: 39  TDIETPGLDRAFEINCVT-FAWRWDDGSIHSVLLDPVGNTLHRQACIDLYERAETII-LH 96

Query: 72  NSYFERTVLKAC--FNL--DIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKME 124
           N+ F+   L+    F    +I I++ + TL+LAR +     +     AL    L     +
Sbjct: 97  NAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLTALSIRYLGLSDFK 156

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           +G ++       +T +  Y+           ++      D   T     +LEPL      
Sbjct: 157 DGMKVAFAAAGYKTIQAGYEGMSIESP----IYRVGAMADTIATL----KLEPLLRAMAI 208

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-----SSSRCLEKL 239
            W LD    D G   D      L     V R  L +  + L             +  E++
Sbjct: 209 NWTLDHPFADHGATTDAEAEKILGDQEIVHRVMLRRTGKGLAVDHEYLTRYQEEKDAERI 268

Query: 240 K-TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           +   L    GL             L+   +L     +     ++A++  +   +  +   
Sbjct: 269 QHEALLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGFDHPL--- 325

Query: 299 NSDGRLRGTLQFLGASRTGRW--SGCVFPPQNLPRPSRSHEELDQIIT-HLPTSITSDPD 355
                   T+     +   +          Q      R H ++  +          S P+
Sbjct: 326 --------TIAQRKLAEVDKVLGYLTKVERQ-AAVTGRCHPQVGVLGASATGRMAYSMPE 376

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
             Q   D     +I  +G+ L   D + IE   +A MAG+   L  FE GEDLY     R
Sbjct: 377 LQQFPKDARP--IITDDGQGLTSIDWSQIEPVTMANMAGDVGFLIPFEAGEDLYEPI-QR 433

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           S  +    +TK+ R I KV+ LA  Y  G          T                    
Sbjct: 434 SCGLP---MTKEGRDIAKVVLLATMYGMGVNGLALKIKHT-------------------V 471

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
           E A+   R M    PE A                W  +   +++             + G
Sbjct: 472 ESAQQIRRQMLAAMPESA---------------KWMARVQGIAD-------------QYG 503

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
           + I A  R                 +LP     V+R                        
Sbjct: 504 RIITAAGR-----------------ILPVDDGGVFR------------------------ 522

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLT--VHDEIVCETPDTDEFNASMLYHLMTS 653
                 VQ  + D+LA  ++   +AG    L   +HDE++ +T   D+     +  +M +
Sbjct: 523 -AVNYTVQGSAYDVLASTIVRMEEAGLGDHLQLAMHDELIVDTEVADD-----VQQIMLT 576

Query: 654 NPS----WAKGLP-LKAEG 667
            P     WA  +P L+ + 
Sbjct: 577 PPDFLIRWAGRVPVLRTDA 595


>gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 886

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 136/373 (36%), Gaps = 52/373 (13%)

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L+  LF +  L     T+    +T + VL    K+      +   R+   + 
Sbjct: 533 FNINSSKQLQNILFKKFNLPKIYKTKLGNISTNEIVLKKLSKIHILPKIILQFRL-IKKI 591

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               L  L++++N+                              + +R H   +QI T  
Sbjct: 592 INTYLRNLIKSINN------------------------------KTNRIHTTYNQINTST 621

Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   I     I   +R   I  +   L+ AD + IE R++A  + ++  +K 
Sbjct: 622 GRLSSKNPNLQNIPIKTKIGRKLRIAFITKKKWLLLTADYSHIELRIIAHYSKDKNLIKD 681

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
               +D++++T +  FN    ++ K  R I K +  ++ Y         ++    +++  
Sbjct: 682 LLKNKDIHISTASHIFNKPLEKIKKYHRNIAKTINFSILYGISPF---GLSKKLNISIKK 738

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
             +L+       ++   + F +   +     A +  +I T  +R K      +S+   L 
Sbjct: 739 SKNLI--YRYFLKYNKIKRFIKNTYKT----AKKRGYIKTLFKR-KLYIPNINSKNIYLK 791

Query: 522 NELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           N   +     +    A  II +    +  ++ KK   ++ +++     L++      +  
Sbjct: 792 NSAKRFCINLMIQNTASDIIKKSMITLHHLFKKKFPKDIKIIMQIHDELIFEIKEKKKDK 851

Query: 580 LNTTTRQLTREYT 592
           +    +++    T
Sbjct: 852 IIDVIKKIMENNT 864


>gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 642

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/637 (14%), Positives = 191/637 (29%), Gaps = 120/637 (18%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L + L N  +T VAHN  FE       +   I I   +   + A      SA +      
Sbjct: 86  LADLLANPHITKVAHNIAFES---SMAYARGIVIQPPVYDTIAAAQMTSRSAYEFR---- 138

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +L+   ++     +         E    ++        +    Y   D   +  ++    
Sbjct: 139 RLNESGLKHLAGELLEESLPTFAETTGGKHFDELPAQDKETVRYGAADADFSLRLYHTFN 198

Query: 177 PL-----SSKEQELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                        + +++         + + G  +D +L        ++E  ++ QE+  
Sbjct: 199 GWFDRYLPRHRWIVEHMESPTAIYLGVMKNNGVPIDQSLMQKRKAESEMEMERIRQEITF 258

Query: 225 LTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           L   +   +       K +LF   GL +  +T         S   L   A+ +       
Sbjct: 259 LIGDVNIGANCSTADFKKYLFESQGLPVLKVTNK-------SQAALDDMAMVLLGEWCEE 311

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +  ++ L  LV+            ++    +        +     P   R H ++  + 
Sbjct: 312 HKPELVPLFKLVQ------------EYRRWGKIQSTYIDGYLKFLNPVTKRLHPDIFALS 359

Query: 344 THLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           T         P+   +         VR+ + A  G  ++  D + IE RV A+   ++  
Sbjct: 360 TDTGRMNCRKPNCQNMPRKSNDPIGVRNFIKAPSGHLILSLDFSQIELRVGAFYCRDERM 419

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVT-------KDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +  G D++  T    F V   +         K++R I K +     Y          
Sbjct: 420 METYRAGGDIHAATTCVIFGVTDEEAQDKHRADYKERRTIAKNVNFGTFYG--------- 470

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                               P   ++   F   +++  PE           CE V    +
Sbjct: 471 ------------------LFPRGLQNTLKFKAGVEKTLPE-----------CESVIANLK 501

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  +S    +     +            +RR +P +  K+                 R
Sbjct: 502 AGYRELST--WQEETKVQAARRLYSETWLGRRRYLPDIRSKE---------------WAR 544

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                R  LNT  +         G   + +  A+ R  + +G+    +     +L +HDE
Sbjct: 545 KSFAERCALNTPIQ---------GTAADILKLAIVR--ILKGLP--DRPWLKPILQIHDE 591

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           +    P    +   + +   M   P     LPL A+ 
Sbjct: 592 LTFIIPAGRLDEAVAFIRACMEEQPFPEFDLPLIAKA 628


>gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 354

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 17/248 (6%)

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            L +   S+           Q  P   R H       T      +S+P+   I       
Sbjct: 42  ILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQNIPIRSEEG 101

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           + +R   IA +G K++ AD + IE R+LA +A      +AF  G+D++  T  + F V  
Sbjct: 102 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV-- 159

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            ++ +  R   K +   + Y         +A   G+ +   A  +  N     + + + +
Sbjct: 160 QEIDEQLRRKAKSINFGIIYGISPF---GLAKRLGITIAEAAEYI--NYYFSCYPEIKAY 214

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                     H   +   G  C       R  ++ +  +     +A       G A    
Sbjct: 215 MEKAVSIARLHGYVETLFGRRC-----FVRDINNTIPYIRQFAERAAINAPLQGTAADII 269

Query: 542 KRRDVPLV 549
           KR  + L 
Sbjct: 270 KRATIQLF 277


>gi|309808033|ref|ZP_07701952.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
 gi|308168716|gb|EFO70815.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
          Length = 302

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 126/375 (33%), Gaps = 98/375 (26%)

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
           + +   S+             +    + H    Q +T      + +P+   I        
Sbjct: 1   MDYRQISKIQSTYINGL-LDYIQADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGK 59

Query: 363 CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA- 420
            +R   +  +    L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++ 
Sbjct: 60  QIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSN 119

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT   R   K +   + Y         +A   G++                 ++A+N
Sbjct: 120 LDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR----------------QEAQN 160

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-II 539
           F     E +P                            ++ + +  A +   E G A  I
Sbjct: 161 FINNYFEQYP----------------------------QIKDYMKAAVKLAREKGYAETI 192

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             +RR +P ++ K           + RS         R+ +N+                 
Sbjct: 193 MHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP---------------- 221

Query: 600 NIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
             +Q  + DI+   M+         K    ++L +HDE++ + P  + +   +++  +M 
Sbjct: 222 --IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPKIMQ 279

Query: 653 SNPSWAKGLPLKAEG 667
                   +PL A+ 
Sbjct: 280 QAAQ--LDVPLIADA 292


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 118/779 (15%), Positives = 222/779 (28%), Gaps = 225/779 (28%)

Query: 6    IDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHP------------VELWDCVHD 50
             D ET   IDL K    G  +        +  F     P            V++ D ++ 
Sbjct: 628  CDTETI-AIDLKKVSPIGHGR--------MICFSIYCGPDVKFFDGNTRLWVDVMDDING 678

Query: 51   PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-------ARSN 103
              + Q  KE  E+  +  V HN  F+R +    +N +I +  +    +        AR N
Sbjct: 679  EAVLQEFKEYFEDESILKVWHNYAFDRHI---FYNHNINVKGFGGDTLHMARLWNAARQN 735

Query: 104  GLPSALKAVGEALKLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRL-----F 157
                +L+A+   L L+  K    K+L   +  K            P  R          +
Sbjct: 736  SGGYSLEALCREL-LNKTK-TPIKDLFGQKKIKANGEAGKAITIPPLQRIQRDRRSILDW 793

Query: 158  GEYCKGDVTVTREIFKRLE-PLSSKEQE-----------LW----YLDQTINDRGYCVDV 201
             EY   D  +T  + + L   L                  W    +L   +  RG  +D+
Sbjct: 794  IEYSSLDSELTWSLRENLHMKLEDMVWTQNSTMWDFYYLNWRPFGHLLTEMEQRGMKIDI 853

Query: 202  ALAHTLN----QIVDVERTKLDQELESLTYGLVS-SSRCLEKLKTWLFLETGLHLEDLTE 256
                 L     + ++  R +        + G    +     +++  LF           +
Sbjct: 854  DYLKNLESTAFKDMEENRNRFISWASKHSEGAKYMNPDSDAQIQQLLFA------PVTNK 907

Query: 257  TTCQRVLSSNKKLTPQAIQVFNN-RMRASRSAV-----------------------LKLN 292
             T + +  S    T     +    R +  ++                           L 
Sbjct: 908  KTKEEMPKSKDFETENVEGIIEEGRTKPKKNMSFILDGLGFPSNSVTTSGWPSVDASALR 967

Query: 293  TLVEAMNSDGRLRGTLQFL--------GASRTGRWS-------------GCVFPPQNLP- 330
             L      +G+     QF              G+ +             G +     +P 
Sbjct: 968  ELAGKSPENGKFGTAYQFFVDKSENKEEGEALGKEACLAIASLLELGTIGTLLNTFIIPL 1027

Query: 331  -----RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380
                 + SR H  ++ + T      +  P+             +R       G  L+VAD
Sbjct: 1028 QKLADKNSRLHTSVN-VNTETGRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVAD 1086

Query: 381  LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD------------- 427
               +E R+LA +   +  + AF+ G D +  T    +      V K              
Sbjct: 1087 YGQLELRLLAHITNCKSMISAFKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGDGEPP 1146

Query: 428  ----------QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                      +R   K +  ++ Y   A          G+ L      +           
Sbjct: 1147 KPLLKNIFASERRKAKTLNFSIAYGKTAHGLST---DWGVTLKEAQETLN---------- 1193

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                            W +    V  +W     A   + +  + 
Sbjct: 1194 -------------------------------RWYEDRPEVL-VWQRKTIATAHSHKWTRT 1221

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGK 596
            ++ R R                  LP   +          R+ +NT  +        GG 
Sbjct: 1222 LMGRYRH-----------------LPDIDNSAKGMKNHAERASINTPLQ--------GG- 1255

Query: 597  LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN 654
              + +++A+   ++ E      + GY +++ +HDE++ E P+ +   A  L  +LM++ 
Sbjct: 1256 AADIVMKAM---LIIEDNKRIKELGYKLIMQIHDELILEGPEENADEARGLVMNLMSNP 1311


>gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 645

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 104/692 (15%), Positives = 198/692 (28%), Gaps = 143/692 (20%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVLKEAL-----ENTDVT 67
            K  +  +  D  +   +F   +         H    +   P  + + L      N  V 
Sbjct: 38  EKAALDAHKAD--IAGVSFSVSEGTAVYVPLKHKTGKNAGSPDKIMQWLSENVFANRKVV 95

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
            +AHN  FE   L A   + +      C   +A +      LK+      L+   ++   
Sbjct: 96  KIAHNLSFEAMFLYA-LGVVLQP---PCYDTIAAALM---TLKSNTAFRTLADSGLKTLT 148

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--------- 178
           + +              R              Y   D   T  ++               
Sbjct: 149 QELFGVDLPSFETVTAGRYFDELDPQDEETVRYACADSDYTLRLYHLFNNWFNRYLPKHR 208

Query: 179 ---SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR- 234
                 E         +   G   D  L        + +  +L   +  L   +   +  
Sbjct: 209 FIVEKLESPAAVYCGLMKYNGLLADEELMLKKQAEAEGKLAELRGNIAFLIGDVNIGANA 268

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
                K +L+ +  L +   T    Q  +        +A+ + +   R +R  + +L  L
Sbjct: 269 STSAFKKYLYDDLKLPVFKTTAK-YQEAMDD------EAMILLSEWCRENRPELAELFEL 321

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           V+            ++    +        +         R H ++  + T        +P
Sbjct: 322 VQ------------EYRRWGKIKSTYIDGYLEYINSVTGRIHPDMFPLGTETGRFAARNP 369

Query: 355 DPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +             VR+  IA +GK L+  D + IE RV A+   ++  L+ + TG D++
Sbjct: 370 NLQNCPRKDNDPVGVRNFFIAPKGKALLSLDFSQIELRVGAFYCRDERMLETYRTGGDIH 429

Query: 410 VTTYARSFNVAPAQVT-------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             T +  + +   +         K++RAI K     + Y    K   +           F
Sbjct: 430 AQTTSVIYRIPFEEAADKSAQHYKERRAIAKNCNFGVFYGLFPKGLHRNLK--------F 481

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              + T                                + CER+    +  + R+ + W 
Sbjct: 482 KAGLDTPL------------------------------SECERIIANLKAGYPRLVQ-WQ 510

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLN 581
           E  +    +    +  + R+R                  LP   S  +       R  LN
Sbjct: 511 EKTKKRAASRRYTETWLGRRRY-----------------LPDIASSDWGKKSFAERCALN 553

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCET 636
           T  +                    + DIL   +         +     VL +HDE+V E 
Sbjct: 554 TPIQ------------------GTAADILKLALGRIIEGLPQRMRLRPVLQIHDELVFEV 595

Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEG 667
           P+     A++ +   M   P     +P+ AE 
Sbjct: 596 PEDKVHEAAVFIKSCMEERPFEEFDVPIVAEA 627


>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
          Length = 1411

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 100/717 (13%), Positives = 198/717 (27%), Gaps = 193/717 (26%)

Query: 49   HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
                + +V +   E+  +  V HN  F+R +    +N +I +  +    +        + 
Sbjct: 755  QGNEILEVFRPYFESESIYKVWHNYGFDRHI---FYNHNIDVKGFGGDTLHMARLWDAAR 811

Query: 109  LKAVGEAL-KLSSQKMEEGKELIA-RFCKGE-THECLYDRN---KP-----NHREAWRLF 157
                G +L  LS + ++  K  I   F K +   + L  ++    P      H +    +
Sbjct: 812  NGRGGYSLEGLSKELLDNHKTSIKDLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETW 871

Query: 158  GEYCKGDVTVTREIFKRLE-PLSSKEQ-----------ELW----YLDQTINDRGYCVDV 201
             EY   D  +T  + + L+  L +               LW    +L   +  RG  VD+
Sbjct: 872  IEYSSLDAELTWNLRENLQAKLQNMVWMNDTNMWDFYHNLWRPFGHLLTDMERRGMKVDI 931

Query: 202  ALAHTLNQIVDVERTKLDQELESLTYGLVSS-----SRCLEKLKTWLF---------LET 247
                T+  +   +        +        +          +++  LF          E 
Sbjct: 932  EHLKTVEGVATKDIQDNMDAFQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKTKEEM 991

Query: 248  GLHLE--------------DLTETTCQRVLSSNKKLTPQ-------AIQVFNNRMRASRS 286
             L  E                 +     +LS               A+   + R  A   
Sbjct: 992  PLEREFETENTEGFIEEGKKKPKKMRPFLLSGLGLPFGSHTASGWPAVDSASLRDLAGNP 1051

Query: 287  AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV-------------FPPQNL-PRP 332
            +  K   +          +   +  G   +   +  +              P Q L    
Sbjct: 1052 SKGKYGKIFNHFKDKSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSFIIPLQKLCDSN 1111

Query: 333  SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
             R H  ++ + T      +  P+             +R       G  LVVAD   +E R
Sbjct: 1112 HRVHTSVN-VNTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLELR 1170

Query: 388  VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---------------------- 425
            +LA +   +  + AF+ G D +  T    +      V                       
Sbjct: 1171 LLAHITNCRSMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDVLLEWDGDGEPPKPLLKDS 1230

Query: 426  -KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               +R   K +  ++ Y   A     ++   G+ L      +                RW
Sbjct: 1231 FGAERRKAKTLNFSIAYGKTA---HGLSKDWGVTLKEAQETLD---------------RW 1272

Query: 485  MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
              +                                LW        +TI+        +  
Sbjct: 1273 YSDRPE---------------------------VLLWQ------RKTIQIANTHKWTRTL 1299

Query: 545  DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                GR  +  D+ N    +   + + +             +Q 
Sbjct: 1300 M-------------------GRYRMLPDIDNPAKGMKGHSERAS---------INTPLQG 1331

Query: 605  VSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655
             + DI+ + M+         + G+ +++ +HDE++ E P+     A  +   + SNP
Sbjct: 1332 GAADIVMKAMLMIEEDKRLKELGFQLIMQIHDELILEGPEQHAKEAREIVMRLMSNP 1388


>gi|300122531|emb|CBK23101.2| unnamed protein product [Blastocystis hominis]
          Length = 437

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 85/486 (17%), Positives = 155/486 (31%), Gaps = 117/486 (24%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  L   ++  G  VD A       ++D     L+Q+ E+L  G        +++  
Sbjct: 14  ELRLLPLLAHMDATGVNVDSAALQRNKMVIDPLLKDLEQKAEAL-VGHPILMWSSKQVCE 72

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            L+ E  L        + + VL +     P    V   R  + + +        E ++  
Sbjct: 73  VLYDELKLEAPKGNRVSTESVLQTMADKHPFPGLVIEYRRLSKQMSTYIDGLEKEFVSVP 132

Query: 302 GR------LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
            R      +  T   + A+ TGR S      Q LP+ S            L      D D
Sbjct: 133 FRSTETKLIYSTWNQM-ATGTGRLSTAAPNMQTLPKRS------------LERLSNLDVD 179

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTY 413
                   +R   +A   ++L+  D   IE RV A  + +   +  F +G+  D+Y    
Sbjct: 180 --------IRGAFVALPNRRLISVDYRQIEMRVFAHCSHDIALINLFSSGQNSDIYTMIA 231

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +    V    VT+  R   KV+ L L                G+ + + A  +K      
Sbjct: 232 SMIHKVEVKDVTQKFRDEAKVITLGLC--------------YGMGVESMASKLKIPI--- 274

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                          ++K +   +   V +         + TI 
Sbjct: 275 ---------------------------LTATQLKNSILNRFKGVLQF-------MKNTIS 300

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
           + +                       +   SGR   ++   +    L    RQ       
Sbjct: 301 SARKTH-------------------FVETLSGRRRYFKAKDSGGEGLAHIDRQ------- 334

Query: 594 GGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY- 648
                 +++Q  + D+L   M+      ++   +I+L +HDE+V + PD+DE    ++  
Sbjct: 335 ---AVNSVIQGSAADLLKCAMILLWKPLSELDSEIILQIHDELVIDCPDSDEVCEKVIAL 391

Query: 649 --HLMT 652
              +M 
Sbjct: 392 LNQVMC 397


>gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1]
 gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1]
          Length = 779

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 103/664 (15%), Positives = 218/664 (32%), Gaps = 85/664 (12%)

Query: 54  PQVLKEALE---NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
           P+ +K+ L+   ++ + ++ HNS F+   +     + +    W  T + A       +  
Sbjct: 136 PEFMKKMLQRIVDSGIPVIYHNSKFDMKSIYWRLGVKMNEPAW-DTYLAAMLLNENESHS 194

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
              ++L     + EE  E+            L+ +  P       +   Y   D   T E
Sbjct: 195 L--KSLHSKYVRNEENAEVAK-------FNDLF-KGIPFSLIPPDVAYMYAAYDPLQTFE 244

Query: 171 IFK----RLEPLSSKEQEL-----WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +++     L P + + +E       ++   I      V   L       VD+++ KL + 
Sbjct: 245 LYEFQEQYLTPGTEQCEEYNLEKVSWVLHNIEMPLIKV---LFDMEVYGVDLDQDKLAEI 301

Query: 222 LESLTYGLVSSSRCLEKL-KTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
            E  T  +  + +  ++L   W      L   +             RV  S    T  AI
Sbjct: 302 REQFTANMNEAEQEFQQLVSEWQPEIEELRQTNFQSYQKLEMDARGRVTVSISSPTQLAI 361

Query: 275 QVFNNRMRASRSAVLKLNTLVEAM-NSDGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     S        T    + + D  + +  L++   ++       +   Q+L +P
Sbjct: 362 LFYDIMGLKSPERDKPRGTGESIVEHFDNDISKALLKYRKYAKLVSTYTTLD--QHLAKP 419

Query: 333 S-RSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIASEGKKLVVADLAGIEAR 387
             R H    Q         + +P+   I S      VR    ASEG  ++ +D +  E R
Sbjct: 420 DNRIHTTFKQYGAKTGRMSSENPNLQNIPSRGEGAVVRQIFAASEGHYIIGSDYSQQEPR 479

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ------------VTKDQRAIGKVM 435
            LA ++G++    A+E   DLY    ++ + V   +              K +R   K +
Sbjct: 480 SLAELSGDESMRHAYEQNLDLYSVIGSKLYGVPYEECLEFYPDGTTNKEGKLRRNSVKSV 539

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
            L L Y  GA +    A    +++     ++      E++               + A +
Sbjct: 540 LLGLMYGRGANSI---AEQMNVSVKEANKVI------EDFFTEFPKVADYIIFVQQQAQD 590

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT------IENGKAIIARKRRDVPLV 549
             ++ TA  R ++            +  +  +  +         + +         +   
Sbjct: 591 LGYVQTATGRRRRLPDMSLPEYE--FEYIDASKNEDFDPFNFDADQQMDDTVPEHIIEKY 648

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
           + + D+          +     +    +           +          +++Q  + D+
Sbjct: 649 WAQLDRAWGFKKKQEIKDQAKAEGILIKDNGGKIADAQRQC-------LNSVIQGTAADM 701

Query: 610 LAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLP 662
               M+           G+ +++ VHDE++ E P    +  A  L  +M         LP
Sbjct: 702 TKYAMIKVHNDAELKELGFHLMIPVHDELLGEVPIKNAKRGAERLTEVMIEAAKDIISLP 761

Query: 663 LKAE 666
           +K +
Sbjct: 762 MKCD 765


>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
 gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I
 gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
          Length = 574

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/494 (17%), Positives = 164/494 (33%), Gaps = 69/494 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D    G         + L   G D+    + D      + + L++ +    +  V HN  
Sbjct: 28  DTETTG-------DRIRLVQIG-DEENTYVIDLYEIQDI-EPLRKLINERGI--VGHNLK 76

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
           F+   LK  +   I       T++ +   G             L    M++  +      
Sbjct: 77  FD---LKYLYRYGIFPSATFDTMIASYLLGY-ERHSLNHIVSNLLGYSMDKSYQTSDWGA 132

Query: 135 --------KGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLSSKEQ 183
                   K   ++ +  R   P  R+           ++  TR  +IF    P++  E 
Sbjct: 133 SVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAERGEELLKTRTAKIFDLKSPVAIVEM 192

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
                   +   G+ VDV       + V+ E  K    ++             ++L + L
Sbjct: 193 AFVREVAKLEINGFPVDVEELTNKLKAVERETQK---RIQEFYIKYRVDPLSPKQLASLL 249

Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             +  L+L    +   +T  + L+S + + P    V   R    +    KL  L E +  
Sbjct: 250 TKKFKLNLPKTPKGNVSTDDKALTSYQDVEP-VKLVLEIRKL--KKIADKLKELKEHL-- 304

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                                         +  R + E  QI        ++ P+ +Q I
Sbjct: 305 ------------------------------KNGRVYPEFKQIGAVTGRMSSAHPN-IQNI 333

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R    A EG   V++D + IE R+ A    +   L AF+ G+D++  T +      
Sbjct: 334 HRDMRGIFKAEEGNTFVISDFSQIELRIAAEYVKDPLMLDAFKKGKDMHRYTASVVLGKK 393

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAE 479
             ++TK++R + K +   L Y   AK   + A    G+ ++     V      + ++  +
Sbjct: 394 EEEITKEERQLAKAINFGLIYGISAKGLAEYAKLGYGVEISLEEAQVLRERFFKNFKAFK 453

Query: 480 NFCRWMQENHPEHA 493
            +   +++   E  
Sbjct: 454 EWHDRVKKELKEKG 467


>gi|301762338|ref|XP_002916602.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Ailuropoda
           melanoleuca]
          Length = 1040

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/502 (17%), Positives = 164/502 (32%), Gaps = 113/502 (22%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             +++   +   + E  L  +   +      VD       + ++     +L+QE   +  
Sbjct: 407 QLKVYGLWQLFCTLELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVA- 465

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET-----------TCQRVLSSNKKLTPQAIQV 276
           G         +L+  LF +  L L    ET           T + VL + + L P    +
Sbjct: 466 GEQFLITSNNQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKII 525

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R R  ++    ++ L+  M   G +  T    G + TGR S      Q + +     
Sbjct: 526 LEYR-RVHKTKSAFVDGLLACMRK-GSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQI 582

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +           +T  P          RS  +A EG   + AD + IE R+LA ++G+ 
Sbjct: 583 TKPQNFKGVEGAMLTISP----------RSMFVAPEGHTFLAADFSQIELRILAHLSGDP 632

Query: 397 WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             LK F+  E  D++ T  ++   V P  VT   R   K +  +  Y  G    +++A+ 
Sbjct: 633 ELLKLFQESERDDVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGK---ERLAAC 689

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+ +   A  +            E+F +  ++      ++D    T  +  +  +    
Sbjct: 690 LGVTVQEAAWFL------------ESFLQKYKK------VKDFVQTTIAQCHQTGY---- 727

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                 +I+ R+R                  LP  R+       
Sbjct: 728 --------------------VASIMGRRRP-----------------LPRVRAQD----- 745

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLT 627
                      Q  R      +    +VQ  + D+    M+    A          +V  
Sbjct: 746 -----------QQLRAQAER-QAVNFVVQGSAADLCKMAMIRVFAAVAASPTLTARLVAQ 793

Query: 628 VHDEIVCETPDTDEFNASMLYH 649
           +HDE++ E  D+     + L  
Sbjct: 794 IHDELLFEVDDSQIPELAALVR 815


>gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
 gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
          Length = 2215

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/541 (16%), Positives = 164/541 (30%), Gaps = 111/541 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E         +   G         T  QI+  +   L+++   L  G   +    + +
Sbjct: 1717 DVEMPSLVTLARMELNGAGFSPVECETQCQIMQAKLRMLEEQAYQLA-GHTFALTSPDDI 1775

Query: 240  KTWLFLETGLHL---------EDLTET-----------------TCQRVLSSNKKLTPQA 273
               LFLE  L               +T                 T + VL   KK     
Sbjct: 1776 AQVLFLELKLPANGDPSSTTNPQPRKTLGTARPARGRKPLKHLSTSKDVLEKLKKFHALP 1835

Query: 274  IQVFNNRMRASRSAVLKLNTLVEAMNSD----GRLRGTLQFLGASRTGRWSGCVFPPQNL 329
              +   R  ++    +      E + +      R+ G      A  TGR +      QN+
Sbjct: 1836 GVILEWRRISNSLTKVVFPLQKEKVYNPRLNMDRIYGNCDLHTA--TGRVTFHDPNLQNI 1893

Query: 330  PRPSRSH-------------------EELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
            P+                         +  +++              Q  S  +R   I 
Sbjct: 1894 PKDFEIEMPTIIGDSPPPGCGETVSKRKGRKVVRRTDGRRVESDGAGQAFSVSLRHAFIP 1953

Query: 371  SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             +G  L+ AD + +E R++A ++ +    +   +G+D++    ++   VA   V+   R 
Sbjct: 1954 FQGGVLLAADYSQLELRIIAHLSQDSKLTQVLNSGQDVFKAIASQWKGVAMEDVSDKLRQ 2013

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K +   + Y  GAKA        G++    A  ++T      ++      R       
Sbjct: 2014 QAKQLCYGMIYGIGAKAL---GEQLGVDEEEGACFIET------FKSKYTGMRRYLHTTV 2064

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL-----HQAFEQTIENGKAIIARKRRD 545
            +   +D F+ T   R     R+    ++E  + +      QA   T++   A + +K   
Sbjct: 2065 DQCKKDGFVQTMAGR-----RRYLPGITEGNHHVRCHAERQAVNTTVQGSAADLVKK--- 2116

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                                       +      L   TR+  R+ T          Q  
Sbjct: 2117 -----------------------AMVSIDQKLQKLFPATRRSHRQDT----------QKR 2143

Query: 606  SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLK 664
            SR             G  ++L +HDE++ E    D    + +  H M +    +  LP+K
Sbjct: 2144 SRRSQQPSSPP---RGAYLILQLHDELIYEVRREDVQQVAQIVKHEMENAVKLSVVLPVK 2200

Query: 665  A 665
             
Sbjct: 2201 V 2201


>gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 16/231 (6%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIE 385
             R H   +Q +       + DP+   I         +RS  +  EG + L+ +D + +E
Sbjct: 14  DGRIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVE 73

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  ++AF +G D +    +  + V   ++T DQR+  K M   L Y    
Sbjct: 74  LRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAYGLST 133

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +     G+       L        ++           E+    A E  +  T   R
Sbjct: 134 YGLSQ---QLGIKPGEAESL------KRQYFATFGKVHEYLESLVSSAREKGYTETIYGR 184

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
            ++ +    S    + +   +A       G A    K   +      ++  
Sbjct: 185 -RRYFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRADDALREAG 234


>gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
 gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
          Length = 642

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 100/644 (15%), Positives = 190/644 (29%), Gaps = 136/644 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
             N  +  VAHN  FE + L   +   I I   +   +L          K+ GE   L  
Sbjct: 94  FHNESLIKVAHNIAFESSFL---YEYGIVIKEPVFDTMLGSML----TFKSFGEFRTLRE 146

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR-LEPLS 179
             ++   + I           +   +  N     +    Y   D      ++   LE   
Sbjct: 147 CGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSDYALRLYNWCLEWFE 206

Query: 180 SKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           +   E   + + +              G  ++  L    N+  + E     +E+ S    
Sbjct: 207 TYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEELEFCKREILSFANR 266

Query: 229 LVSSSRCLE--KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            V+    L+    K +LF +  L +  + E     +           I +    +R  + 
Sbjct: 267 EVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGEPSL------DDESLILLDEWCLRNFKK 320

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                  L+E +    R+         S+                  + H +   + T  
Sbjct: 321 GTY----LIECIKRHKRV---------SKLKSTYIEALGKLLNCETGKIHTDFFSMGTET 367

Query: 347 PTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+   +         +R   I S     +  D + IE RV A+   ++  + A
Sbjct: 368 GRFSSRNPNLQNLPRKDNDHLGIRKLFIPSPNHVFLDFDFSQIELRVGAYYCRDRKMINA 427

Query: 402 FETGEDLYVTTYARSFNVAPAQVT-------KDQRAIGKVMELALGYQGGAKAFQK-MAS 453
           F    D++  T +  +N+   + T       K +R I K     + +    K  QK +  
Sbjct: 428 FMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNFGVFFGLFPKGLQKTLMY 487

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+N++                                          CER+ +  +  
Sbjct: 488 KGGINISE---------------------------------------KDCERIIRNIKDG 508

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           + R+S    +                  +RR +  +   K K+       + R++     
Sbjct: 509 YPRLST--WQKDTVKVAAYRGYTRSRTGRRRYLKDI---KSKDW------NKRAVS---- 553

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTV 628
              R  LNT                   +Q  + DI+   M         +     +L +
Sbjct: 554 --ERCALNTP------------------IQGTAADIIKIAMARILRELPEREYIKPLLQI 593

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE---GY 668
           HDE++ E  +     A + +   M   P     +PLK E   GY
Sbjct: 594 HDELLFEVREDKVNEAIAFIKDCMERTPFKDFNIPLKVEYSVGY 637


>gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 374

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 106/300 (35%), Gaps = 36/300 (12%)

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  L      ++   ++K  +                 K+  WL  + G+ L    +
Sbjct: 1   MPVDKNLLKN---MLTDIQSKYQRMYIEFVRNYGVDPFSPAKVSNWLVNKVGITLPKTQK 57

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                 LSS  K   +   +   R         KL   ++ +N   R             
Sbjct: 58  ----GALSSQDKALKKYEHLKEVRQLMEIRTTKKLLDKLKELNEHTR------------- 100

Query: 317 GRWSGCVFPPQNLP---RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
                      N P      R H +  QI        +S P+ LQ I   +R     S+G
Sbjct: 101 -----------NDPSDSDTVRIHSQFRQIGAPTGRMSSSKPN-LQNIPPELRVLFRPSKG 148

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             ++VAD + IE R+ A    ++  + AF+ G+DL+  T +     +  ++TK++R + K
Sbjct: 149 YSMIVADYSQIELRIAAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQLAK 208

Query: 434 VMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
            +   L Y    ++  + A    G++++        +   + +   + +    +E   +H
Sbjct: 209 AINFGLIYGISPRSLMEYARNNYGVDISLKEAQDFHDKFFQHYRGFKKWHEETKEKLNKH 268


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 142/484 (29%), Gaps = 71/484 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNS 73
           DL   G+  + +   ++  +    +    L D    P   + L+   E      +V HN 
Sbjct: 153 DLETTGLDPHQDRPRLLSLS---TERDTYLVDLFALPHALEALRPLFEAKTGPVLVGHNL 209

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            F+   L            W   L     +              L  +            
Sbjct: 210 KFDLAFLLKAGLWPEGRRLWCTGLAHQVIHARSRMPALADLVPGLDKRLQTS-------- 261

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                     D + P           Y   D  V                 L++  Q  +
Sbjct: 262 ----------DWSGPISEAQLA----YAARDTQVLL--------------PLYHQQQEES 293

Query: 194 DR-GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            R G            +++++E   L         G+  +       + WL       L 
Sbjct: 294 RRLGIG----------KVLEIESRALPAVAWMGLMGVPFNP------ERWLATAKEAEL- 336

Query: 253 DLTETTCQRVLSSNKKLT--PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                + Q  L      T      QV     RA           +        +   L +
Sbjct: 337 -----SAQEALKRLDWRTNWDSPKQVLEALRRAGIELSDTREETLSRHREHPTVAALLAY 391

Query: 311 LGASRTGRWSGCVFPPQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCV 368
               +     G     +NL P   R H    QI         S P+  Q+  +   R+C 
Sbjct: 392 REHRKRQSTYGAA-WLENLHPLTGRIHPSWQQIGAESGRMSCSRPNLQQVPREPAYRACF 450

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
            A  G+ L+ AD + IE R+ A +AGE+  L+AFE GEDL+  T         A+ +++ 
Sbjct: 451 QAPGGRVLIKADYSQIELRLAAQIAGEKRMLEAFEQGEDLHTLTARLVTGK--AEPSRED 508

Query: 429 RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           R + K +   L Y  G++  +  A    GL L+         +    +     + R   E
Sbjct: 509 RQLAKALNFGLLYGMGSEGLRTYARANYGLELSPQEAEALREAFFRAYPGLRAWHRHQPE 568

Query: 488 NHPE 491
              E
Sbjct: 569 GEVE 572



 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 8/93 (8%)

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                P  R+                 R+      Y  KL    VQ    D L   +   
Sbjct: 552 FFRAYPGLRAWHRHQPEGEVEVRTLAGRR-RVTGRYTEKL-NTPVQGSGADGLKLTLALL 609

Query: 618 TKA-----GYDIVLTVHDEIVCETPDTDEFNAS 645
            ++     G   VL VHDEIV E P  D  +A+
Sbjct: 610 YESRQKAPGCFPVLAVHDEIVIEAP-ADGVSAA 641


>gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator]
          Length = 1937

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/519 (16%), Positives = 174/519 (33%), Gaps = 91/519 (17%)

Query: 159  EYCKGDVTV---TREIFKRLEPLS--------SKEQELWYLDQTINDRGYCVDVALAHTL 207
                  V     T  I  +LE L+          E  +  +   +   G  V++      
Sbjct: 1484 RSAAEAVLTWHMTDSITSKLEELNPVLLHTFRDIEMRIATILACMELSGIGVNLKALQET 1543

Query: 208  NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
              ++  E   L+     L  G   +    +++   L    GL+ +    +T + VL    
Sbjct: 1544 LSVILSEMQSLETRAYDLA-GRKFNLSSSKEVGQVL----GLYKDKKV-STSKAVLEKCD 1597

Query: 268  KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
               P +  V + R + + +    +  L+     D R+ G       + TGR S      Q
Sbjct: 1598 N--PISRLVISWR-KLNATKTKIVYPLLNLSQEDSRIHGNCITC--TVTGRVSMHEPNLQ 1652

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            N+P+                     D + L      VR   + + G  ++ AD   +E R
Sbjct: 1653 NVPKD----------------FHFEDNNLLV----SVRRSFVPALGNVMLSADYCQLELR 1692

Query: 388  VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
            +L   + +    +  +   D++ +  A+  NV   +VT + R   K +   + Y  G   
Sbjct: 1693 LLTHFSQDSVLCEIMKQQGDIFKSIAAKWNNVIEEEVTNEMRQRTKQLCYGMIYGMGV-- 1750

Query: 448  FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             + +A    ++     H +++              +W+ +   E A  + ++ T   R +
Sbjct: 1751 -KSLAENLCISETEAQHFLES-----FMNAYPGIYKWLDDTL-EKAHHNGYVTTLLGRRR 1803

Query: 508  KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            +    + ++ S       QA    ++   A I +K   +    M+    + +++ P    
Sbjct: 1804 QLPDLRSTKSSTRAQAERQAVNTKVQGSAADIVKKAMIIIEEKMRHSFPDSVIVFP---- 1859

Query: 568  LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
                            TR+L R                SRD+L        + G  +VL 
Sbjct: 1860 ------------ETQGTRKLRRN---------------SRDML--------QRGGYLVLQ 1884

Query: 628  VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665
            +HDE++ E    D    + ++   M         LP+K 
Sbjct: 1885 LHDELLYEVNSADLKEVAIIIKESMEDVCQLTVPLPVKV 1923


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 106/711 (14%), Positives = 203/711 (28%), Gaps = 145/711 (20%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           + + P    D   +     +  +  LE++ +  V HN  F+R VL   FN  I +     
Sbjct: 175 YGNGPYIWVDNLDNAEGTLEYFRAFLEDSSLKKVWHNYSFDRHVL---FNHGINVQGLHG 231

Query: 96  TLVLARSNGLPSALKAVGEAL-----KLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
             +        +  K  G +L      L  Q+ +  KEL       +      ++  PN 
Sbjct: 232 DTMHMARLWNTARFKRGGYSLQALTSDLLHQRKKNMKELFGTPKPRKDGSPGKEKTIPNV 291

Query: 151 RE---------AWRLFGEYCKGDVTVTREIFK-RLEP--------------LSSKEQELW 186
            +          W  +  +          + + +LE               +     E +
Sbjct: 292 ADLQRCADFRSRWIRYSVFDAESTWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFY 351

Query: 187 --------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL---------------- 222
                        I  +G  VD A    + +    +R +L+Q +                
Sbjct: 352 LKYLVPFGECLTDIERKGMNVDRAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNV 411

Query: 223 --ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----------------------TT 258
              +    L+ +     + K  L  E    +E+  +                      T 
Sbjct: 412 YSAAQKQQLLFAPYSDAQGKAILPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFGLTP 471

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK-LNTLVEAMNSDGRLRGTLQFLGASRTG 317
                S    +T   ++       A+     K  +   +                 S   
Sbjct: 472 ISFTASGLPSVTASVLEELAGNPEANPPKYGKAYDHFADKEEGAAACHALRALYEISSIN 531

Query: 318 RWSGC-VFPPQNLPRP-SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
                 + P Q L     R H  L+ + T      +  P+             +R   +A
Sbjct: 532 TMLNNFILPLQELADSAGRVHCSLN-LNTDTGRLSSRKPNLQNQPALEKDRYKIRDAFVA 590

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +GKKL+VAD + +E R+LA +   +  ++AF  G D +  T    ++            
Sbjct: 591 PKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYD-----------N 639

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
           + K +E                  T         L +  +   +     NF     +   
Sbjct: 640 VAKAVESGEVLLEWDY--------TKGTSPPVPLLKEKFATERKNAKILNFSIAYGKTPF 691

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
             + +         ++   W      V +      QA +   + G       R       
Sbjct: 692 GLSKDFGVRRVEASKILDKWYGGRQEVRKW---QEQAIDTARKFGYTRTLMGRYRRLPDA 748

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
           M K  + +     S            R+ +NT                   +Q  + D++
Sbjct: 749 MLKSNSFISRKAQSH---------AERAAVNTP------------------IQGAAADLV 781

Query: 611 AEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655
            + M+   K       G+++V  +HDEI+ E P+ +   A  +   +  NP
Sbjct: 782 MQAMLRINKNSRLRSMGWEMVCQIHDEIILEGPEDNAEEAKAIVKDLMENP 832


>gi|119599917|gb|EAW79511.1| polymerase (DNA directed), theta, isoform CRA_b [Homo sapiens]
          Length = 1762

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 157/529 (29%), Gaps = 103/529 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 1247 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 1305

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 1306 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 1365

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 1366 PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 1422

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 1423 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 1482

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 1483 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 1542

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +         
Sbjct: 1543 PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTG 1594

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              ++M E    +   D F+ T   R ++                 +    TI  G A   
Sbjct: 1595 INQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADI 1652

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
             K   V             +               +R  +  + R               
Sbjct: 1653 VKIATVN------------IQKQLETFHSTFKSHGHREGMLQSDRT-------------- 1686

Query: 601  IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 1687 ---GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 1731


>gi|119599919|gb|EAW79513.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
 gi|119599920|gb|EAW79514.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
          Length = 2270

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 157/529 (29%), Gaps = 103/529 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 1755 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 1813

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 1814 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 1873

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 1874 PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 1930

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 1931 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 1990

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 1991 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2050

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +         
Sbjct: 2051 PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTG 2102

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              ++M E    +   D F+ T   R ++                 +    TI  G A   
Sbjct: 2103 INQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADI 2160

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
             K   V             +               +R  +  + R               
Sbjct: 2161 VKIATVN------------IQKQLETFHSTFKSHGHREGMLQSDRT-------------- 2194

Query: 601  IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2195 ---GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2239


>gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens]
          Length = 2725

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 157/529 (29%), Gaps = 103/529 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 2210 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2268

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2269 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 2328

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 2329 PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 2385

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 2386 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2445

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 2446 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2505

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +         
Sbjct: 2506 PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTG 2557

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              ++M E    +   D F+ T   R ++                 +    TI  G A   
Sbjct: 2558 INQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADI 2615

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
             K   V             +               +R  +  + R               
Sbjct: 2616 VKIATVN------------IQKQLETFHSTFKSHGHREGMLQSDRT-------------- 2649

Query: 601  IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2650 ---GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2694


>gi|62089320|dbj|BAD93104.1| DNA polymerase theta variant [Homo sapiens]
          Length = 2214

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 157/529 (29%), Gaps = 103/529 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 1699 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 1757

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 1758 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 1817

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 1818 PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 1874

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 1875 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 1934

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 1935 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 1994

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +         
Sbjct: 1995 PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTG 2046

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              ++M E    +   D F+ T   R ++                 +    TI  G A   
Sbjct: 2047 INQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADI 2104

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
             K   V             +               +R  +  + R               
Sbjct: 2105 VKIATVN------------IQKQLETFHSTFKSHGHREGMLQSDRT-------------- 2138

Query: 601  IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2139 ---GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2183


>gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens]
          Length = 2590

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 157/529 (29%), Gaps = 103/529 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 2075 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2133

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2134 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 2193

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 2194 PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 2250

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 2251 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2310

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 2311 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2370

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +         
Sbjct: 2371 PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTG 2422

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              ++M E    +   D F+ T   R ++                 +    TI  G A   
Sbjct: 2423 INQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADI 2480

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
             K   V             +               +R  +  + R               
Sbjct: 2481 VKIATVN------------IQKQLETFHSTFKSHGHREGMLQSDRT-------------- 2514

Query: 601  IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2515 ---GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2559


>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
          Length = 1855

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/728 (15%), Positives = 210/728 (28%), Gaps = 207/728 (28%)

Query: 49   HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-------AR 101
            +   + Q+ KE  E+  +  V HN  F+R V    +N +I +  +    +L       +R
Sbjct: 1190 NGDEILQIFKEYFEDESIFKVWHNYAFDRHV---FYNHNIDVVGFGGDTMLMARLWDASR 1246

Query: 102  SNGLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHECLYD---RNKPNHREAWRL 156
                  +L+ + + L L   K  M++          G   + +      +     +    
Sbjct: 1247 MMRGGYSLEGLTKDL-LDKHKTNMDDLFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTK 1305

Query: 157  FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWY--------LDQTINDRGYCV 199
            + EY   D  VT  + + L             S   + +Y        L   +  RG  V
Sbjct: 1306 WIEYSSRDAEVTWMLRENLHKKLMTMEWIGPNSNMWDFYYMMWRPFGQLLTDMERRGMKV 1365

Query: 200  DVALAHTLNQIVDVERTKLDQELESLTYGLVSSS-----RCLEKLKTWLFLE-------- 246
            D+     +  I   + T+ ++       G   +          +++ +LF          
Sbjct: 1366 DLEHLKGVEVIAQRDITEHNENFRRWALGYCENVKHMNIDSDAQVQQFLFAPCRNVKTKE 1425

Query: 247  ----------------------------------TGLHLEDLTETTCQRV-LSSNKKLTP 271
                                               GL +  +T +    V  +S + L+ 
Sbjct: 1426 EMAREEEFERENVDGIIEEGAKKAKKKIGFKLAGLGLPVPGVTNSGWPSVDAASLRLLSG 1485

Query: 272  QAIQVFNNRMRASRSAVLKLNTL-----VEAMNSDGR--LRGTLQFLGASRTGR-WSGCV 323
            +           +  AV +L        +E    +GR         L     G   S  +
Sbjct: 1486 KDPANGKYGTAYNHFAVDRLPPNATEEEIEKAKEEGRQACLAIASLLEVGSIGTLISSFI 1545

Query: 324  FPPQNLPR-PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377
             P Q L     R H  ++ + T      +  P+             +R       G  LV
Sbjct: 1546 IPLQRLADSNHRLHTSVN-VNTETGRLSSRRPNLQNQPALEKDRYKIRKAFTCEPGNTLV 1604

Query: 378  VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-------------------N 418
            VAD   +E R+L  +   +  L AF  G D +  T    +                    
Sbjct: 1605 VADYGQLELRLLGHITNCKSMLDAFRVGGDFHSRTAMGMYPHVRAAVDAGEVLLEWDGEG 1664

Query: 419  VAPAQVTKD----QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
              P  + KD    +R   K +  ++ Y   A    K  + T                   
Sbjct: 1665 APPKPLLKDKFASERRKAKTLNFSIAYGKTAHGLSKDWNVT------------------- 1705

Query: 475  WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
              +A+N      E+ PE                            LW           + 
Sbjct: 1706 LSEAQNTLNRWYEDRPE--------------------------VLLWQRSTIQIAHQKKW 1739

Query: 535  GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTY 593
             + ++ R                   +LP   S     VG + R+ +NT           
Sbjct: 1740 TRTLMGR-----------------YRLLPDIDSKARGFVGHSERASINTPL--------- 1773

Query: 594  GGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNA-SM 646
                     Q  + DI+ + M+         + GY +++ +HDE++ E P+     A  +
Sbjct: 1774 ---------QGGAADIVMKAMLIIEQDARLKELGYRLIMQIHDELILEGPEEHAPEARDI 1824

Query: 647  LYHLMTSN 654
            +  LM + 
Sbjct: 1825 VIKLMGNP 1832


>gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis]
          Length = 1661

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/516 (16%), Positives = 171/516 (33%), Gaps = 109/516 (21%)

Query: 172  FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                    + E    Y+   I   G   +V L   ++  +   +    +   +   G   
Sbjct: 1217 KNLWNAFLNIELPAQYVVGNIESAGIGFNVDLCMAMSTCLKN-KLNELEAEAAKEAGHRF 1275

Query: 232  SSRCLEKLKTWLFLETGLHLEDLTE------------TTCQRVLSSNKKLTPQAIQVFNN 279
            S    +++   LF E  L   D ++            +T + VL +  +L P    +   
Sbjct: 1276 SLNSPKEVSKVLFYELQLPPPDESKVSRRRFTSVKQYSTAKHVLENLAQLHPLPGIILEF 1335

Query: 280  RMRASRSAVLKLN---------TLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            R  ++                 T    + ++  R+ G   +  A  TGR        Q +
Sbjct: 1336 RQLSAALTNYIYPLLRINRYLCTNCNCVFSTQERIIGKYDWYTA--TGRLIMHEPNLQIV 1393

Query: 330  PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            P+                      P+    +   +R   +ASEG  L+ AD + +E R+L
Sbjct: 1394 PK------------------FLEIPNGNNTLH--IREIFVASEGCTLLSADFSQLELRIL 1433

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A ++ +   +K  +   D++    A+  ++  + V + QR   K +  AL Y       +
Sbjct: 1434 AHLSNDSKLIKILKEKIDVFTEIAAKMNSIDRSAVNEIQRNRAKQICYALIYGMCP---K 1490

Query: 450  KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             +A+  G +                 +   +  RW+ E   E      F  T   RV+  
Sbjct: 1491 SLAAELGTDEEQAIQF-----YNNFKKLFPDVTRWLIET-TEKCRSRGFCVTLANRVRYF 1544

Query: 510  WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
               + S  S+  +   QA   T++   + I +    +  VY+                  
Sbjct: 1545 AAIRSSATSDKLHAERQAINTTVQGSASDIFK--IALRKVYL------------------ 1584

Query: 570  YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                      L+  T++  +          N  Q +++                I+  +H
Sbjct: 1585 ---------ALDDYTKKNGQM---------NNAQTLAK----------------IIFQIH 1610

Query: 630  DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLK 664
            DE++ E  +++ E  A+++ H M +  S    LP++
Sbjct: 1611 DELMLEVTNSNVEAVATIVKHSMETAVSLRVDLPVR 1646


>gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 317

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 100/329 (30%), Gaps = 81/329 (24%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIE 385
             R H    Q +       + DP+   I         +R   +  +    L+ AD + IE
Sbjct: 39  DGRIHTTFGQTVAATGRLSSIDPNLQNIPARTVDGQKIREAFVPQKPYAALMTADYSQIE 98

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G++  L AF +GEDL+ +  A  + V P +VT  QR+  K     L Y   A
Sbjct: 99  MRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSA 158

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +A+   ++      L+ T                                     
Sbjct: 159 Y---GLAAQLNISQRDAKQLMDTYF----------------------------------- 180

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                     R  ++   L+Q        G     R RR                 LP  
Sbjct: 181 ---------ERFGKVREYLNQIVATATRVGYTETMRGRRRY---------------LPEL 216

Query: 566 RSLVYRDVGNN-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
           RS       N  R+ LN   +    +               +  +  +  +   +    +
Sbjct: 217 RSTNRNVADNARRAALNAPIQGSAADLM------------KAAMLQVDADLRQEQLQSRV 264

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTS 653
           +L VHDE+V E    +      L     +
Sbjct: 265 LLQVHDELVLEVAPGETERLETLVRQAMT 293


>gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 132

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 82/131 (62%), Gaps = 6/131 (4%)

Query: 551 MKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQA 604
           M+  +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QA
Sbjct: 1   MQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQA 60

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           VSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL 
Sbjct: 61  VSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLA 120

Query: 665 AEGYESKRYRK 675
           AEG+E+ RYRK
Sbjct: 121 AEGFETHRYRK 131


>gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens]
 gi|325511332|sp|O75417|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase eta
 gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct]
          Length = 2590

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 157/529 (29%), Gaps = 103/529 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 2075 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2133

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2134 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 2193

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 2194 PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 2250

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 2251 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2310

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 2311 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2370

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +         
Sbjct: 2371 PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTG 2422

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              ++M E    +   D F+ T   R ++                 +    TI  G A   
Sbjct: 2423 INQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADI 2480

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
             K   V             +               +R  +  + +               
Sbjct: 2481 VKIATVN------------IQKQLETFHSTFKSHGHREGMLQSDQT-------------- 2514

Query: 601  IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2515 ---GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2559


>gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens]
          Length = 1154

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 157/529 (29%), Gaps = 103/529 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 641  KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 699

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 700  AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 759

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 760  PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 816

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 817  NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 876

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 877  SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 936

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +         
Sbjct: 937  PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTG 988

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              ++M E    +   D F+ T   R ++                 +    TI  G A   
Sbjct: 989  INQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADI 1046

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
             K   V             +               +R  +  + +               
Sbjct: 1047 VKIATVN------------IQKQLETFHSTFKSHGHREGMLQSDQT-------------- 1080

Query: 601  IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 1081 ---GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 1125


>gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 261

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 16/229 (6%)

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
              +SDP+   I         +R C I     K   AD + IE R++A ++ ++  ++AF
Sbjct: 1   RLSSSDPNLQNIPVRDDDGKEIRKCFIPEPSCKFFSADYSQIELRIMAHLSCDENMMEAF 60

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T ++ +  A  +VT  QR   K     + Y         +A   G++    
Sbjct: 61  REGFDIHRATASKIWKEAMDEVTDSQRKQAKQANFGIIYGITTY---GLAQRMGIDNGEA 117

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L+       ++       +   E   E A E  +  T   R ++     +S+   +  
Sbjct: 118 RQLID------DYFTTFPKVKEYMEKAKEIARERGYAETLFGR-RRYLPDINSKNGTVRG 170

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570
              +        G      K   + +    K +     ++L     L +
Sbjct: 171 FAERNAINAPIQGSEADIIKLAMIRIWKRFKKEGIRSRMILQVHDELNF 219


>gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
          Length = 761

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 111/695 (15%), Positives = 206/695 (29%), Gaps = 148/695 (21%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH------PVELWDCVH--DPVMPQVLKEALENTD 65
           +D    G+  Y +   ++  +    +       PVE  DC       + + L     +  
Sbjct: 142 VDTETTGVDVYTD--VIVGLSLTLPNADWHVYIPVEHVDCEQLSRAYVLEGLAPVFNDES 199

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
           +  V HN+ F+  +L+     D+    W  T+          + +A+G A     + +  
Sbjct: 200 IGKVLHNAIFDIAMLRRH-GFDLKGVAW-DTMTAMHLLNENESDRALGGAGSFKLKDLAP 257

Query: 126 GKELIARFCKG-ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-------RLEP 177
                       +T + L+ RN         +   Y   D  +T ++++       ++  
Sbjct: 258 -----KYLKTPADTFDALFGRNAQFKEVPLDIALVYAAKDTELTWKLYEFQRYHMAKIPT 312

Query: 178 LSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-ESLTYGLVS- 231
           +       E  L Y+   +   GY +D+  A    + +     +L +EL   LT      
Sbjct: 313 ILDYYQTVEIPLLYVIVDLEANGYILDLDFAKEYGEKLHKRAEELRKELVAELTPFHEGD 372

Query: 232 ---SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +     +++  L    G  L ++      + L   K       ++            
Sbjct: 373 EPINLNSTHQMRPALSKAIGKDLSNMDAK---KTLKPLKDDYEIIAKLLE---------- 419

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                                +    +         P +  P   R H   + + T    
Sbjct: 420 ---------------------YKNIVKLSGTYIDTLPTKQNPTTERWHSRFNPMGTVTGR 458

Query: 349 SITSDPD--------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
             +   +         +Q      R       GK LV AD    E R +A+++GE   + 
Sbjct: 459 FSSGKDEEDKTQQGFNVQNQPPEARPMFGPPPGKLLVGADFKAQEIRCVAYLSGEPVLIN 518

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKD-------QRAIGKVMELALGYQGGAKAFQKMAS 453
           AF    D Y T  +  +     +V K+       +R   KV  LA  Y     +   M  
Sbjct: 519 AFLEERDPYATMASNFYKRPHEEVYKNADGSDTKERKKMKVAWLATLYGMSDYSLADMLG 578

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                   F          E +        W++EN  E   ++ ++       K+     
Sbjct: 579 VGKKEATEFKE--------ELFGSMPKLSAWLKEN-EEFVRKNGYVWADLNARKRRLPDA 629

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                                        R+++P       K              Y D 
Sbjct: 630 --------------------------KLPRKNIPYGKWNDPK--------------YDDA 649

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTV 628
             + S +N   RQ T             VQ  S       M+ A      K G+ +  TV
Sbjct: 650 RKHNSRINRALRQATNAR----------VQGSSSIQTKVTMIKAHEYCANKPGWALWSTV 699

Query: 629 HDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662
           HDE++ E P+   +  A  +  +M ++  W   +P
Sbjct: 700 HDELIFEVPEDFTWEEAQEIRDIMLNSYRWGDVVP 734


>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
 gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
          Length = 1054

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 122/736 (16%), Positives = 220/736 (29%), Gaps = 155/736 (21%)

Query: 37   FDDHP---VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
            + + P   V+  D     +  Q+ KE LE+ +   V HN  F+R VL   FN  I +   
Sbjct: 375  YGNGPYVWVDNLDSAEGTL--QLFKEFLESKNYLKVWHNYSFDRHVL---FNHGINVQGL 429

Query: 94   ICTLVLARSNGLPSALKAVGEAL-----KLSSQKMEEGKEL--IARFCK----------G 136
                +        +  +  G +L      L  Q+ +  KEL  I +  K           
Sbjct: 430  GGDTMHMARLWNTARFQNGGYSLESLTADLLLQRKKPMKELFGIPKLKKDGSKGKERIMP 489

Query: 137  ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-------RLEPLSSKEQELWYLD 189
               E       P  R+ W  +  Y          + +         E  +  E ++  + 
Sbjct: 490  TVEELQR---FPEFRKRWIRYSVYDAESTWFLHRVLQDKLDQTFWFEKPNGGESQVGSMY 546

Query: 190  Q--------------TINDRGYCVDVALAHTLNQIVDVERTKLDQ--------ELESLTY 227
            +               I  RG  VD+     + +    +R +L++          E    
Sbjct: 547  EFYREYIVPFGECLTDIERRGMHVDLEYLAGVEKQALEDRARLEKLVLQWASRYCEESER 606

Query: 228  GLVSSSRCLEKL-----------KTWLFLETGLHLED--------LTETTCQRVLSSNKK 268
              + S+   ++L           +  L  E    +E+          +   +R ++    
Sbjct: 607  INLYSAAQKQQLLFAPYFNKKKKEQVLPAERSFEVENTEGFIEEGKQKAKKKRNITIRGL 666

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQ----------FLGASRTG 317
              P      +    AS   +  L    EA     GR  G  +           L A    
Sbjct: 667  GIPPTHFTASGLPAASAEVLKDLAGHPEANPPQYGRAYGHFEDKEEGAAACVALKALFDI 726

Query: 318  RWSGCVFPPQNLP------RPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRS 366
                 +     LP        SR H  L+ + T      +  P+     +       +R 
Sbjct: 727  SSINTMLNNFILPLQELADSNSRVHCSLN-LNTDTGRLSSRKPNLQNQPAMGKDRYKIRD 785

Query: 367  CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
               A  GKKL+VAD + +E R++A +   +  ++AF+ G D +  T    +         
Sbjct: 786  AFTAPPGKKLIVADYSQLELRLMAHITQCKAMIEAFKAGGDFHSRTAMGMYP-------- 837

Query: 427  DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
                + K +E         +A  +   TTG        L        +     NF     
Sbjct: 838  ---YVAKAVENG-------EALLEWDHTTGKEPP-APLLKDKYGDERKNAKVLNFSIAYG 886

Query: 487  ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
            +     A +            + W      V +      +A E     G       R   
Sbjct: 887  KTAFGLAKDFNVSRKEAADTLEKWYSDRGEVRDW---QKKAIETARTFGYTRTLLGRYRR 943

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                M +D +                    R+ +NT                   +Q  +
Sbjct: 944  LPDAMLRDDSMTSKK---------ARGHAERAAINTP------------------IQGAA 976

Query: 607  RDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAK 659
             D++ + M+         + G+ +V  +HDEI+ E P+     A  ++ HLM +      
Sbjct: 977  ADVVMQAMLQVHHSPRLRELGWGMVSQIHDEIIVEGPEESVDEAMKLVVHLMENPFQKPL 1036

Query: 660  GLPLKAEGYESKRYRK 675
             + L+ +      + K
Sbjct: 1037 SVALEVDANVDDSWFK 1052


>gi|332225568|ref|XP_003261953.1| PREDICTED: DNA polymerase theta, partial [Nomascus leucogenys]
          Length = 2473

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 84/528 (15%), Positives = 159/528 (30%), Gaps = 101/528 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 1958 KVEMPSQYCLALLELNGIGFSAAECESQKHIMQAKLDAIETQAYQLA-GHSFSLTSSDDI 2016

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2017 AEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALHPL 2076

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 2077 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 2134

Query: 329  LPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC--------- 363
            +PR      P+   E           L           + +P     + +          
Sbjct: 2135 VPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYTKGCSLNPRCQAQMEERAADRGMPFS 2194

Query: 364  --VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   +   G  ++ AD + +E R+LA ++ ++  ++A  TG D++ +  A    + P
Sbjct: 2195 ISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQALNTGADVFRSIAAEWKMIEP 2254

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +     F
Sbjct: 2255 ESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGINQF 2309

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
             R   +N          +G    R        +       +   QA   T++   A I +
Sbjct: 2310 MRETVKNCKRDGFVQTILGR--RRYLPGIEDNNPYHKA--HAERQAINTTVQGSAADIVK 2365

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                            + +               +R  +  + R                
Sbjct: 2366 IAT-------------VNIQKQLETFHSTFKSHGHREGMLQSDRT--------------- 2397

Query: 602  VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
               +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2398 --GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2442


>gi|260794541|ref|XP_002592267.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
 gi|229277483|gb|EEN48278.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
          Length = 595

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/527 (14%), Positives = 163/527 (30%), Gaps = 74/527 (14%)

Query: 166 TVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
             T  +  +L  L  +          E         +   G   +     T  Q++    
Sbjct: 102 VFTFHLMVKLSKLLEEQGLSTAFRNVEMPSLVALARLELNGAGFNPEECETQCQVMKDRL 161

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-------------DLTETTCQRV 262
             L++    L  G   +    + +   L+ E  L +                +       
Sbjct: 162 RMLEERAHKLA-GHTFALNSTKAVDKVLYEEKKLEINEDPSTNSQPQERLSTSRKGVLEK 220

Query: 263 LSSNKKLTPQAIQVFNNRM---RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           L ++  L P    +   +      ++   L+   +     +  R+  T     A  TGR 
Sbjct: 221 LKTSHPLHPLPGVILKWKHISNLLNKVTPLQKKNVYNPRLNMDRIYSTCNLHTA--TGRV 278

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           +      Q +P+        D      P +   +   +     C+R   I  +G  ++ A
Sbjct: 279 AFHDPNLQFIPKEFEIEMPTDTNNEDGPPAAGEE--TMSKRKVCMRHAFIPFKGGVILAA 336

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + +E R++A ++ +    +A  +G+D++    ++   VA   V+   R   K +   +
Sbjct: 337 DYSQLEVRIMAHLSKDSKLTQALNSGQDVFKAIASQWKGVAVEHVSDKLRQQAKQLYYGI 396

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G    + +    G++       ++T      ++ +    +  ++   +    + ++
Sbjct: 397 IYGMGP---KTLGEKLGVSKEEGKRRIET------FKSSYTGIQRYRQTTVDQCKRNGYV 447

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            T  ER +           +L     QAF  TI+   A + +K        M      L 
Sbjct: 448 QTMAERRRYLPDINGEDYYKLSQAERQAFNTTIQGSAADLVKKA-------MVLIDQRLQ 500

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
              P  R           +     T +   +                             
Sbjct: 501 QEFPDTRRSHRH---GESTAAAADTDKRRSQQPSSP-----------------------P 534

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKA 665
            G  ++L +HDE++ E  + DE   + +  H M      +  LP+K 
Sbjct: 535 RGAYLILQLHDELIYEVHEEDEQKVAQIVKHKMEKAMELSVELPVKV 581


>gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta]
          Length = 2672

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 84/532 (15%), Positives = 161/532 (30%), Gaps = 109/532 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A       I+  +   ++ +   L  G   S    + +
Sbjct: 2157 KVEMPSQYCLALLELNGIGFSTAECEGQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2215

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2216 AEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALHPL 2275

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 2276 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQN 2333

Query: 329  LPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC--------- 363
            +PR      P+   E           L           + +P     + +          
Sbjct: 2334 VPRDFEIKMPTLVGESPPSQAIGKGLLPMGRGKSKKGCSLNPGRQAQMEERAADRGMPFS 2393

Query: 364  --VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + P
Sbjct: 2394 ISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEP 2453

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +     F
Sbjct: 2454 ESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGINQF 2508

Query: 482  CRWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKA 537
             R   +N          +G       +K    + + H+    +   +  +    ++    
Sbjct: 2509 MRETVKNCKRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATV 2568

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
             I ++       +  K   +   ML S R+ + R                        KL
Sbjct: 2569 NIQKQLETFHSTF--KSHGHREGMLQSDRTGLLRKR----------------------KL 2604

Query: 598  TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                           GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2605 Q--------------GMFCPVRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2641


>gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158]
 gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158]
          Length = 248

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 11/210 (5%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA+ G ++V AD + IE R++A ++G+   L+AF  GED++  T A  F V 
Sbjct: 6   GRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVT 65

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           P +V  DQR I KV+   L Y   A     +AS  G+  +     +              
Sbjct: 66  PLEVNADQRRIAKVINFGLIYGMSAF---GLASNLGITRDAAKLYIDRYFTRYP------ 116

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                 EN    A E  ++ T   R +    + +           +A       G A   
Sbjct: 117 GVAQYMENTRASAKEKGYVETVFGR-RLWLPEINGGNGPRRQAAERAAINAPMQGTAADL 175

Query: 541 RKRRDVPL-VYMKKDKNNLILMLPSGRSLV 569
            K   + +  ++ +DK    +++     LV
Sbjct: 176 IKLSMIAVDQWLTRDKLASRMIMQVHDELV 205


>gi|114588750|ref|XP_001165287.1| PREDICTED: DNA polymerase theta isoform 4 [Pan troglodytes]
          Length = 2499

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 158/528 (29%), Gaps = 101/528 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 1984 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2042

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2043 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 2102

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 2103 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 2160

Query: 329  LPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC--------- 363
            +PR      P+   E           L           + +P     + +          
Sbjct: 2161 VPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFS 2220

Query: 364  --VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + P
Sbjct: 2221 ISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEP 2280

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V  D R   K +   + Y  GA   + +    G+  N  A  + +  +          
Sbjct: 2281 ESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTGI 2332

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
             ++M E    +   D F+ T   R ++                 +    TI  G A    
Sbjct: 2333 NQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIV 2390

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            K   V             +               +R  +  + R                
Sbjct: 2391 KIATVN------------IQKQLETFHSTFKSHGHREGMLQSDRT--------------- 2423

Query: 602  VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
               +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2424 --GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2468


>gi|114588754|ref|XP_001165216.1| PREDICTED: DNA polymerase theta isoform 3 [Pan troglodytes]
          Length = 2500

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 158/528 (29%), Gaps = 101/528 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 1985 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2043

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2044 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 2103

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 2104 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 2161

Query: 329  LPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC--------- 363
            +PR      P+   E           L           + +P     + +          
Sbjct: 2162 VPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFS 2221

Query: 364  --VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + P
Sbjct: 2222 ISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEP 2281

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V  D R   K +   + Y  GA   + +    G+  N  A  + +  +          
Sbjct: 2282 ESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTGI 2333

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
             ++M E    +   D F+ T   R ++                 +    TI  G A    
Sbjct: 2334 NQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIV 2391

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            K   V             +               +R  +  + R                
Sbjct: 2392 KIATVN------------IQKQLETFHSTFKSHGHREGMLQSDRT--------------- 2424

Query: 602  VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
               +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2425 --GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2469


>gi|114588756|ref|XP_001165181.1| PREDICTED: DNA polymerase theta isoform 2 [Pan troglodytes]
          Length = 1762

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 158/528 (29%), Gaps = 101/528 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 1247 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 1305

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 1306 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 1365

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 1366 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 1423

Query: 329  LPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC--------- 363
            +PR      P+   E           L           + +P     + +          
Sbjct: 1424 VPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFS 1483

Query: 364  --VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + P
Sbjct: 1484 ISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEP 1543

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V  D R   K +   + Y  GA   + +    G+  N  A  + +  +          
Sbjct: 1544 ESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTGI 1595

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
             ++M E    +   D F+ T   R ++                 +    TI  G A    
Sbjct: 1596 NQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIV 1653

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            K   V             +               +R  +  + R                
Sbjct: 1654 KIATVN------------IQKQLETFHSTFKSHGHREGMLQSDRT--------------- 1686

Query: 602  VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
               +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 1687 --GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 1731


>gi|114588748|ref|XP_516680.2| PREDICTED: DNA polymerase theta isoform 5 [Pan troglodytes]
 gi|332817593|ref|XP_001165150.2| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes]
          Length = 2596

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 158/528 (29%), Gaps = 101/528 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 2081 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2139

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2140 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 2199

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 2200 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 2257

Query: 329  LPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC--------- 363
            +PR      P+   E           L           + +P     + +          
Sbjct: 2258 VPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFS 2317

Query: 364  --VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + P
Sbjct: 2318 ISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEP 2377

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V  D R   K +   + Y  GA   + +    G+  N  A  + +  +          
Sbjct: 2378 ESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR-----YTGI 2429

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
             ++M E    +   D F+ T   R ++                 +    TI  G A    
Sbjct: 2430 NQFMTETVK-NCKRDGFVQTILGR-RRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIV 2487

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            K   V             +               +R  +  + R                
Sbjct: 2488 KIATVN------------IQKQLETFHSTFKSHGHREGMLQSDRT--------------- 2520

Query: 602  VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
               +SR    +GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2521 --GLSRKRKLQGMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2565


>gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus]
 gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus
            norvegicus]
          Length = 2547

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 79/529 (14%), Positives = 160/529 (30%), Gaps = 105/529 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   T   I+  +   ++ +   L  G   S    + +
Sbjct: 2034 KVEMPSQYCLALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLA-GHSFSFTSADDI 2092

Query: 240  KTWLFLETGLHLEDLTET---------------------------TCQRVLSSNKKLTPQ 272
               LFLE  L      +T                           T + +L+  K L P 
Sbjct: 2093 AQVLFLELKLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRRFSTSKDILNKLKDLHPL 2152

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF---LGASRTGRWSGCVFPPQNL 329
               +   R R S +    +  L    + +  LR    +      + TGR +      QN+
Sbjct: 2153 PGLILEWR-RISNAITKVVFPLQREKHLNPFLRMERIYPVSQSHTATGRITFTEPNIQNV 2211

Query: 330  PRP------------------SRSHEELDQIITHLPTSITSDPDPLQIISDC-------V 364
            PR                    +    + +    +          L+  SD        +
Sbjct: 2212 PRDFEIKMPTLVRESPPSQASGKGQLAMARQNQKVYGLHPGQRTVLEKTSDRGVPFSVSM 2271

Query: 365  RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
            R   +   G  ++ AD + +E R+LA ++ +   ++   +G D++ +  A    + P  V
Sbjct: 2272 RHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNSGADVFRSIAAEWKMIEPDAV 2331

Query: 425  TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
              + R   K +   + Y  GA   + +    G+  N  A  + +  +   ++   +F R 
Sbjct: 2332 GDNLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YKGINHFMRD 2386

Query: 485  MQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              +N       +  +G       +K    + + H+    +   +  +    ++     I 
Sbjct: 2387 TVKNCRRDGFVETILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKVATVNIQ 2446

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            ++       +  K   +   ML S R+ +                               
Sbjct: 2447 KQLETFHPTF--KSHGHRESMLQSDRAGLLPKRKVK------------------------ 2480

Query: 601  IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                        GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2481 ------------GMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2516


>gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
 gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
          Length = 642

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 96/645 (14%), Positives = 185/645 (28%), Gaps = 138/645 (21%)

Query: 61  LENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             N  +  VAHN  FE + L      +  P+   +         G     K+ GE   L 
Sbjct: 94  FHNESLIKVAHNISFESSFLCEYGIVIKEPVFDTM--------LGSMLTFKSFGEFRTLR 145

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              ++   + I           +   +  N     +    Y   D      ++       
Sbjct: 146 DSGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSDYALRLYNWCMEWF 205

Query: 180 SK---EQELWYLDQT---------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                E  L               +   G  ++  L    N+  + E     +E+ S   
Sbjct: 206 ETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEELEFCKREILSFAN 265

Query: 228 GLVSSSRCLE--KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             V+    L+    K +LF +  L +  + E         +  L  +++ +         
Sbjct: 266 REVNLGSNLQTQDFKDFLFKDLRLPVLKICEKG-------DPSLDDESLILLE---EWCI 315

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               K   L+E +    R+         S+                  + H +   +   
Sbjct: 316 RNFKKGTYLIECIKRHKRV---------SKLKSTYIEALGKLLNCETGKIHTDFFSMGAE 366

Query: 346 LPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                + +P+   +         +R   I S     +  D + IE RV A+   ++  + 
Sbjct: 367 TGRFSSRNPNLQNLPRKDNDHLGIRKLFIPSPNHVFLDFDFSQIELRVGAYYCKDRKMIN 426

Query: 401 AFETGEDLYVTTYARSFNVAPAQVT-------KDQRAIGKVMELALGYQGGAKAFQK-MA 452
           AF    D++  T +  +N+   + T       K +R I K     + +    K  QK + 
Sbjct: 427 AFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNFGVFFGLFPKGLQKTLM 486

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+N++                                          CER+ +  + 
Sbjct: 487 YKGGINISE---------------------------------------KDCERIIRNIKD 507

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            + R+S    +                  +RR +  +   K K+       + R++    
Sbjct: 508 GYPRLST--WQKDTVKVAAYRGYTRSRTGRRRYLKDM---KSKDW------NKRAVS--- 553

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLT 627
               R  LNT                   +Q  + DI+   M         +     +L 
Sbjct: 554 ---ERCALNTP------------------IQGTAADIIKIAMARILRELPERGYIKPLLQ 592

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE---GY 668
           +HDE++ E  +     A + +   M   P     +P+K E   GY
Sbjct: 593 IHDELLFEVREDKVNEAIVFIKDCMERTPFKDFNIPIKVEYSVGY 637


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/516 (15%), Positives = 159/516 (30%), Gaps = 74/516 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L+   E+  V  +AHN+ F+  +L     + +    W     +   N    +      
Sbjct: 187 ETLRPFYEDPTVGKLAHNAKFDIHMLDRE-GIKLRGLTWDTQEAMRLLNENEPSFALKNL 245

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-- 172
             K    +     +L  +          +D       +   +   Y   D  VT ++   
Sbjct: 246 VTKYLRIESSTYGDLFGK--------IGFD-----EVDDLEIALAYAAKDGDVTLKLRNF 292

Query: 173 --KRLEPLSSK-------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             + L  +          E  L  + Q +   G+ +D+  A    + +     +L  EL 
Sbjct: 293 QREHLAKMPEVLRYYETVEVPLISVVQQMETTGFDIDLDYAEEYGRELKSGLDRLYDELI 352

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                +  +     +LK  L   TG   E L  T  ++VL    K  P   ++       
Sbjct: 353 EELGDV--NINSPAQLKPALERVTG---ESLASTDAKKVLKPLAKKYPVVKKLLEY---- 403

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            + +    +T + A                           P     +  + +   +   
Sbjct: 404 -KDSFKLYSTYINA--------------------------LPELIDQKTGKLYTNFNPNG 436

Query: 344 THLPTSITS-DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                  +      LQ      R   +A EG  ++  D +  E R LA+   +   +  +
Sbjct: 437 AKTGRFSSGGTGVNLQNQPKKARKLFVAPEGYAILGGDWSQQEYRCLAYFTQDPKLVDNY 496

Query: 403 ETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
             G+DLY +  A  F     +       R   KV+ LA+ Y GGA   +      G+  +
Sbjct: 497 FRGDDLYASIAAEVFGKPIEECGDGSVYRKQAKVIMLAVAYGGGANMLK---DAIGVEKH 553

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE- 519
                + +    E +   + +    Q+   +H     F+     + K+       R ++ 
Sbjct: 554 EAQKFLDSFF--ERFPVVKEWVESNQKFVKKHG----FVWMDHLQRKRRLPDAKDRSAKG 607

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
            ++ +          G A I  K   + L  +   K
Sbjct: 608 HYSAVFTQSTNARVQGSAAIQTKATMIALQELCDRK 643


>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
 gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
 gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
          Length = 1369

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 115/748 (15%), Positives = 214/748 (28%), Gaps = 236/748 (31%)

Query: 42   VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-- 99
            V++ D +    + QV KE  E+  +  V HN  F+R +    +N  I +  +    +   
Sbjct: 700  VDVMDDIEGDEILQVFKEYFEDESILKVWHNYAFDRHI---FYNHGINVKGFGGDTLHMA 756

Query: 100  -----ARSNGLPSALKAVGEALKLSSQKMEEGKELIA-RFCKGETHECLYDRNKPNHR-E 152
                 +R N    +L+A+ + L L+  K+   K+L   R  K +  E       P  R +
Sbjct: 757  RLWNASRMNSGGYSLEALSKEL-LNKPKV-PIKDLFGTRKIKADGEEGKSIVIPPLERIQ 814

Query: 153  AWRLFG----EYCKGDVTVTREIFKRLE-PLSSKEQ----ELW-----------YLDQTI 192
                F     EY   D  +T  + + +   L   E      +W           +L   +
Sbjct: 815  RDSKFILNWIEYSSLDSELTWLLRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEM 874

Query: 193  NDRGYCVDVALAHTLNQ-----IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE- 246
              RG  VD+    +L +     + +  +  L+            +     +++   F   
Sbjct: 875  EQRGLKVDIDYLKSLEEKAYTDMEENRKVFLNWAKTHSPDAENMNPVSDAQIQQLFFAPV 934

Query: 247  -----------------------------------------TGLHLEDLTETTCQRV--- 262
                                                      G+  + LT      V   
Sbjct: 935  QNKKTKESLPLEKDFECDNLDGTIEVGKTKPKKKKTFYLRGIGMESKSLTTNGWPSVDSS 994

Query: 263  -LSSNKKLTPQAIQ-------------------VFNNRMRASRSAVLKLNTLVEAMNSDG 302
             L       P   +                       R +  R A + +N L+E + S G
Sbjct: 995  SLRELAGKNPIDGKYGSAYDFFVKSKNECYKDLPIEEREQMGREASIAINALLE-LGSIG 1053

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSHEELDQIITHLPTSITSDPDPLQII- 360
             L  T               + P Q L    SR H  ++ + T      +  P+      
Sbjct: 1054 TLLNTF--------------IIPLQKLADSNSRLHTSIN-VNTETGRLSSKKPNLQNQPA 1098

Query: 361  ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                   +R       G  L+VAD   +E R+LA +   +  + AF+ G D +  T    
Sbjct: 1099 LEKDRYKIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMITAFQVGGDFHSRTAMGM 1158

Query: 417  FNVAPAQVTKDQ-----------------------RAIGKVMELALGYQGGAKAFQKMAS 453
            +      + + +                       R   K +  ++ Y   A     ++ 
Sbjct: 1159 YPHVKEAIDRGEVLLEWDGEGEPPKPLLKNVYASERRKAKTLNFSIAYGKTA---HGLSQ 1215

Query: 454  TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              G+ LN     +                                           W + 
Sbjct: 1216 DWGVTLNEAKETLN-----------------------------------------RWYED 1234

Query: 514  HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
               V  +W    +  E   + G       R                  LP  +       
Sbjct: 1235 RPEVL-VWQ--RKTIETAHKYGWTRTLMGR---------------YRQLPDIKGNKGMKG 1276

Query: 574  GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLT 627
               R+ +NT                    Q  + DI+ + M+         + G+ +++ 
Sbjct: 1277 HAERASINTPL------------------QGGAADIVMKAMLIIEDNKRLKELGFKLIMQ 1318

Query: 628  VHDEIVCETPDTDEFNA-SMLYHLMTSN 654
            +HDE++ E P+     A S++ +LM++ 
Sbjct: 1319 IHDELILEGPEQHADEARSIMMNLMSNP 1346


>gi|315452575|ref|YP_004072845.1| DNA polymerase I [Helicobacter felis ATCC 49179]
 gi|315131627|emb|CBY82255.1| DNA polymerase I [Helicobacter felis ATCC 49179]
          Length = 861

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 132/374 (35%), Gaps = 60/374 (16%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +  +G+ +D+A   TL Q        L  ++ +L +  + +    ++ 
Sbjct: 456 ELEYPLLAILLEMQAQGFSLDLAYFQTLKQEFAQSLNTLQNQIHALAHTDI-NVNSTKQW 514

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
             +L+ + GL  + + +      + +       +++      + +R   +++ TL++A+ 
Sbjct: 515 AHFLYQDLGLQAKGVKK------IKTGFSTDEASLKALQETYQGARVQGVEVATLLDAL- 567

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                   L +    +           QN  +  + H    Q  T      ++ P+   I
Sbjct: 568 --------LGYRELFKLQSTYVEPLLTQN--QHGKIHTIFYQHTTASSRLSSAHPNLQNI 617

Query: 360 -----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                +   +    I S     L+ AD + IE R+LA  + +   ++AF   +D+++ T 
Sbjct: 618 PIRTPLGKKIAHGFIPSAPDLLLLGADYSQIELRLLAHFSNDTHLIQAFLQNQDIHLNTA 677

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS--- 470
              FN         +R   K +  AL Y  G    +++A T  ++       +       
Sbjct: 678 LALFN------DPHKRHAAKSINFALIYGMGP---RRLADTLKISQQEAKDYIDRYFNAF 728

Query: 471 ------------------------APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                     +   D  N    +Q  +    I  LF G+A + V
Sbjct: 729 PTIKDFLDQLKARILQEGKITTLLGHQRHFDFTNATPKLQAEYLREGINTLFQGSASDLV 788

Query: 507 KKAWRQKHSRVSEL 520
           K A  + H+ +++ 
Sbjct: 789 KLAMLKIHAHIAKY 802


>gi|296226149|ref|XP_002807658.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Callithrix
            jacchus]
          Length = 2550

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/532 (15%), Positives = 163/532 (30%), Gaps = 109/532 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 2035 KVEMPSQYCLALLELNGIGFSTAECESQKHILQAKLDAIETQAYQLA-GHSFSFTSSDDI 2093

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2094 AEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALHPL 2153

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 2154 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQN 2211

Query: 329  LPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC--------- 363
            +PR      P+   E           L      +    + +P     + +          
Sbjct: 2212 VPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKIKKGWSLNPGCQAQMEERAAERGMPFS 2271

Query: 364  --VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   +   G  ++ AD + +E R+LA ++ ++  ++   +G D++ +  A    + P
Sbjct: 2272 VSMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNSGADVFRSIAAEWKMIEP 2331

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +     F
Sbjct: 2332 ESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGINQF 2386

Query: 482  CRWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKA 537
             R   +N          +G       +K+   + + H+    +   +  +    ++    
Sbjct: 2387 MRETVKNCKRDGFVQTILGRRRYLPGIKENNPYHKAHAERQAINTTVQGSAADIVKIATV 2446

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
             I ++       +  K   +   ML S ++ +                          KL
Sbjct: 2447 NIQKQLETFHSTF--KSHGHREGMLQSDQTGLLPKR----------------------KL 2482

Query: 598  TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                           GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2483 Q--------------GMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2519


>gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2382

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 86/545 (15%), Positives = 161/545 (29%), Gaps = 116/545 (21%)

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E         +   G     A       ++  +   L+ +   L  G   S   ++ +  
Sbjct: 1857 EMPSQVCLALLELNGVGFSAAECERQKHVMQAKLAALEGQAYRLA-GHSFSLTSVDDVAQ 1915

Query: 242  WLFLETGLHLE-----DLTETTC--------------------QRVLSSNKKLTPQAIQV 276
             LFLE  L          ++ T                     + VL   + L P    +
Sbjct: 1916 VLFLELHLPPNGDVNGSKSKKTLGYGRRGGGGRVRLGKQFSTTKDVLEKLRPLHPLPGLI 1975

Query: 277  FNNRMRASRSAVLKLNTLVEAMN----SDGRLRGTLQFLGASRT---------------- 316
               R   +    +      E  +    S  R+    Q   A+                  
Sbjct: 1976 LEWRRITNALTKVVFPLQREKKHHSALSMDRIYPIAQTHTATGNPQTPEPCETCNMRWLS 2035

Query: 317  -----GRWSGCVFPPQNLPR-------------------PSRSHEELDQIITHLPTSITS 352
                 GR S      QN+P+                      +  +  +  + +P+   +
Sbjct: 2036 LVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPSQDGRHLAARKGKKRRSAVPSGAAA 2095

Query: 353  DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
              +     S  +R   +   G  ++ AD + +E RVLA ++ +Q  L+    G D++   
Sbjct: 2096 GSEQGPAFSVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLNGGADVFRCI 2155

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             A   +V P  VT   R   K +   + Y  GA   + +    G+  N  A  ++T  + 
Sbjct: 2156 AAEWKSVDPDSVTDGLRQQAKQICYGIIYGMGA---KSLGEQMGVEENDAACYIETFKSR 2212

Query: 473  EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              +     F +   +N  ++      +G    R        ++ V    +   QA   T+
Sbjct: 2213 --YRGINAFLKETVKNCGKNGYVQTLMGR--RRYLPGITNTNAHVKA--HAERQAVNTTV 2266

Query: 533  ENGKAIIAR--KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            +   A I +         +        L    P+     +   G++R             
Sbjct: 2267 QGSAADIVKLATVNIQKRLRQTYPAAPLSHQHPAPVMGRFCGAGSSR------------- 2313

Query: 591  YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                        +AV+R             G   VL +HDE++ ET D D    + +   
Sbjct: 2314 -----------RRAVTR----------HPRGGYFVLQLHDELIYETTDEDVIQVAQIVKR 2352

Query: 651  -MTSN 654
             M + 
Sbjct: 2353 EMETA 2357


>gi|118083459|ref|XP_416549.2| PREDICTED: similar to DNA polymerase theta [Gallus gallus]
          Length = 2620

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 85/536 (15%), Positives = 160/536 (29%), Gaps = 108/536 (20%)

Query: 179  SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
            S  E    Y    +   G     A   T  Q++  + T+++ +   L  G   S    + 
Sbjct: 2097 SKVEMPNHYCLALLELNGIGFSTAAYETQKQVMQAKLTEIETKAYQLA-GHSFSLTSPDD 2155

Query: 239  LKTWLFLETGLHLE---------------------------DLTETTCQRVLSSNKKLTP 271
            +   LFLE  L                                  +T + VL   K L P
Sbjct: 2156 VAEVLFLELKLPQNGDVKVQGNKKTLGYTRRTSIKGNRVRLSKQFSTTKDVLEKLKPLHP 2215

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                +   R   S  + +      E    +     R+    Q   A  TGR S      Q
Sbjct: 2216 LPGLILEWRRINSAISKVVFPLQREKRFNSALGMERIYPVSQTHTA--TGRVSFAEPNIQ 2273

Query: 328  NLPRPSRSHEEL-------DQIITHLPTSITSDPDPLQIISD------------------ 362
            N+PR       +        +   +      S  +  + +                    
Sbjct: 2274 NVPRDFEIEMPIVVEESPPFRTHVYSCAVSRSLLNFERGLGRKHSSVLPSGVNTWTADRT 2333

Query: 363  ---------CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                      +R   +   G  ++ AD   +E R+LA  + +   ++AF  G D++ +  
Sbjct: 2334 ERRGIPFFVSMRHAFVPFPGGFILAADYCQLELRILAHFSRDCRLIEAFNKGADVFKSIA 2393

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            A    +    V    R   K +   + Y  GA   + +    G++ N  A+ +++  +  
Sbjct: 2394 AEWKMIDSEAVGDSTRQQAKQICYGIIYGIGA---KSLGEQMGIDDNKAANYIESFKSR- 2449

Query: 474  EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             +   + F +    N          +G    R   A R  +  +    +   QA   T++
Sbjct: 2450 -YTGIQKFLKETVSNCRRDGFVQTILGR--RRYLPAIRDSNPYIKA--HAERQAVNTTVQ 2504

Query: 534  NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
               A I +             +  L  +    +S  + +    R      +R+  RE   
Sbjct: 2505 GSAADIVKTAT-------VNIQRRLEALSSVNKSHGHLENSFQRDKTGRLSRKRNRE--- 2554

Query: 594  GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                                M++    G+ I L +HDE++ E  + D    + +  
Sbjct: 2555 --------------------MLHPISGGFFI-LQLHDELLYEVAEDDVIQVAQIVK 2589


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 115/722 (15%), Positives = 229/722 (31%), Gaps = 161/722 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVH---DPVMPQV-----LKEALE 62
           D+   G+  Y  D+ V +  +  D     +     D  +   +  M +      +   L 
Sbjct: 89  DVETTGLDIY-NDILVGICLYNPDLPSAYVPFNHTDLQNRRVEGQMTEEECKAVMLPYLA 147

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSS 120
           N D+  + HN  F+  ++   +   I  + W  T + +          LK +     L+ 
Sbjct: 148 NKDLKCINHNIKFDDKMITFNWGQRI-ANVWWDTNIASWVLNENEKHGLKPLYNKYILNG 206

Query: 121 Q-KMEEGKELIARF-CKGETHECLYDRNKPNHREAWRLFGEYCKGD-VTVTREIFKRLEP 177
           +   E+  +L     C     E        +  + W L+    +       R  +++L  
Sbjct: 207 EGSDEDFGDLFEGIPCNYIPIEIFSIYGANDGFKTWALYQFQKQYLNPEAKRADYRKLYD 266

Query: 178 L-SSKEQELWYLDQTINDRGYCVDVALAHTLN-----------QIVDVERTKLDQELES- 224
           +  + E  L  +   +  RG  +    A  L+            + D    + ++ ++  
Sbjct: 267 VFMNVEMPLIDVCMDMELRGVEIREDYAKELSVKFNEEMQEKEALCDAYVREFEEYIKEN 326

Query: 225 -----LTYG-LVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQV 276
                LT G    +    +++   L+    L      E   T  +++  ++    +A   
Sbjct: 327 ATLMRLTKGTCKINYNSPQQMACLLYDIFQLKSVSRKEPRGTGDKIIQMHRNKAKKAGTK 386

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R         +           G+L GT      +                + +  H
Sbjct: 387 KGERFIEFLDNYQRYK-------ECGKLLGTYIDKIPAVKCE------------KTNAVH 427

Query: 337 EELDQIITHLPTSITSD----PDPLQIIS--DCVRSCVIASEGKKLVVADLAGIEARVLA 390
              +Q         +SD     +   I S    +R    A +G KLV  D + IE RVLA
Sbjct: 428 TTFNQYGAVTGRFSSSDTVTKINLQNIPSHEKSIRKIFKARDGYKLVGGDFSQIEPRVLA 487

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ------------VTKDQRAIGKVMELA 438
           + +G++    A++ G+DLY    ++ + V                  K +R   K + L 
Sbjct: 488 YFSGDEAMQNAYKEGKDLYAIMGSKVYGVPYEDCREFYPDGTVNPEGKHRRTTMKSVLLG 547

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y+ GA+A                            E  +   +W              
Sbjct: 548 IMYERGAQAIG--------------------------EQFDKSAQW-------------- 567

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +++   + +   +V +L  ++ +  E+       I  RKRR   +     D    
Sbjct: 568 ----AQKLIDDFYKSFPKVQQLRLKIEKTAEE-YGYVTTIKGRKRRLPDMQLSNHDD--- 619

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                      YR    +R  LN+                  ++Q  S DI+   M+   
Sbjct: 620 -----------YRYAEAHRQSLNS------------------VIQGSSADIMKLAMIEIY 650

Query: 619 K------AGYDIVLTVHDEIVCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
           +          +++TVHDE++ E P+   +  A +L   M         LP+  +   ++
Sbjct: 651 RDPRYKELDCHMIITVHDELIMEVPEANVKVGAELLVSTMKRVGHSLIDLPMSVDAEVNE 710

Query: 672 RY 673
            +
Sbjct: 711 YW 712


>gi|308803633|ref|XP_003079129.1| DNA polymerase I (ISS) [Ostreococcus tauri]
 gi|116057584|emb|CAL53787.1| DNA polymerase I (ISS) [Ostreococcus tauri]
          Length = 538

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/524 (15%), Positives = 154/524 (29%), Gaps = 127/524 (24%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALA 204
           W       + D+ +    ++R   +            E ++      +  RG C D   A
Sbjct: 89  WDSPTARLRADLALALRYYQRGSEIPRMQGISFARIVEAKIAVALGAMQHRGMCFDRHEA 148

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL--TETTCQRV 262
           +T     +    +L      +  G+  +    +++   L+ +  L        +      
Sbjct: 149 NTQRAAANARVEELQNRARDVIGGVEINLSSAQQVGDVLYNQLKLPPPSAHAMKGAKSSH 208

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           LS++  +  Q    F   +   R A+       E    DG       +  A+        
Sbjct: 209 LSTSVDVLQQMKHPFAQIVLDHRGALK------ERAMCDG-------YDKATVVNAEGH- 254

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
                     +R H   +   T      +S P+  Q+    +R+C IA  G+ LV AD +
Sbjct: 255 ----------ARIHTRWNNTSTATGRLSSSAPNVQQVGRGSMRNCFIAPPGRVLVAADYS 304

Query: 383 GIEARVLAWMAGEQWKLKAFETG---EDLYVTTYARSFNVAPAQVT-KDQRAIGKVMELA 438
            IE RVLA +  ++  +  F       D++   +    N+     T    R I K     
Sbjct: 305 QIELRVLAHLTEDERLISLFNEHSRTVDVFCAIWNAGRNLPIETPTEPGTRDIAKRTAYG 364

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y   A     +A     +       +                                
Sbjct: 365 IVYGQHA---TGLAEKLNCSKFEAQGYIAAFH---------------------------- 393

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                        +   RV +    + +  +    +G  II                   
Sbjct: 394 -------------RAFPRVQQW---ISRVIQTAERDGAVIIPF----------------- 420

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-- 616
                SGR      + +N     +  ++         +    ++Q  + D++   M+   
Sbjct: 421 -----SGRHRPLPKIHSNVFSERSEAQR---------QAVNTVIQGSASDLIKTAMLRWC 466

Query: 617 -ATKAGY------DIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
            ATKAG       ++V  +HDE++ E   D  +    ++   M 
Sbjct: 467 EATKAGEARAELVELVAQIHDELLFECEKDYVQEAVRVIRSCME 510


>gi|194222793|ref|XP_001502374.2| PREDICTED: similar to polymerase (DNA directed), theta [Equus
            caballus]
          Length = 2701

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 83/531 (15%), Positives = 157/531 (29%), Gaps = 108/531 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 2187 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2245

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + +L+  K L P 
Sbjct: 2246 AEVLFLELKLPPNGEMKNQGGKKTLGSTRRGNDNGRKLRLGKQFSTSKDILNKLKALHPL 2305

Query: 273  AIQVFNNRMR--ASRSAVLKLNTLVEAMNSDG--RLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    A    V  L          G  R+    Q   A  TGR +      QN
Sbjct: 2306 PGLILEWRRITNAITKVVFPLQRAKRLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQN 2363

Query: 329  LPRP---------SRSHEELDQIITHLPTSITSDPDPLQIISDC---------------- 363
            +PR            S          LP    ++      +                   
Sbjct: 2364 VPRDFEIKMPTLVGESPPSQALGKGLLPMGRGNEKSHGLNLGHQAQTEERASDRGMPFSV 2423

Query: 364  -VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + P 
Sbjct: 2424 SMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGADVFRSIAAEWKMIEPE 2483

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +    +F 
Sbjct: 2484 SVGDDLRQQAKQICYGILYGMGA---KSLGEQMGIKENDAACYIDSFKSK--YTGINHFM 2538

Query: 483  RWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKAI 538
            R   +N          +G       +K    + + H+    +   +  +    ++     
Sbjct: 2539 RETVKNCKRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVN 2598

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            I ++       +  K   +   ML S R+ +                          KL 
Sbjct: 2599 IQKQLETFHSSF--KSHGHREGMLQSDRTGLLPKR----------------------KLQ 2634

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                          GM +  + G+ I L +HDE++ E  + D    + +  
Sbjct: 2635 --------------GMFSPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2670


>gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus]
          Length = 2273

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 78/531 (14%), Positives = 157/531 (29%), Gaps = 108/531 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   ++  +   ++ +   L  G   S    + +
Sbjct: 1759 KVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-GHSFSFTSADDI 1817

Query: 240  KTWLFLETGLHLEDLTET---------------------------TCQRVLSSNKKLTPQ 272
               LFLE  L      +T                           T + +L+  K L P 
Sbjct: 1818 AQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPL 1877

Query: 273  AIQVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R  ++        L+    +  +    R+    Q   A  TGR +      QN
Sbjct: 1878 PGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTA--TGRITFTEPNIQN 1935

Query: 329  LPRPSRSHE---------------ELDQIITHLPTSITSDP-----------DPLQIISD 362
            +PR                          I          P           D     S 
Sbjct: 1936 VPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSV 1995

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A    + P 
Sbjct: 1996 SMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPD 2055

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   ++   +F 
Sbjct: 2056 AVGDDLRQHAKQICYGIIYGMGA---KSLGEQMGIKENDAASYIDSFKSR--YKGINHFM 2110

Query: 483  RWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKAI 538
            R   +N  ++   +  +G       +K    + + H+    +   +  +    ++     
Sbjct: 2111 RDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2170

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            I ++       +  K   +   ML + R+ +                             
Sbjct: 2171 IQKQLETFRSTF--KSHGHRESMLQNDRTGLLPKRKLK---------------------- 2206

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                          GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2207 --------------GMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2242


>gi|148665538|gb|EDK97954.1| polymerase (DNA directed), theta, isoform CRA_d [Mus musculus]
          Length = 2398

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 78/531 (14%), Positives = 157/531 (29%), Gaps = 108/531 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   ++  +   ++ +   L  G   S    + +
Sbjct: 1884 KVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-GHSFSFTSADDI 1942

Query: 240  KTWLFLETGLHLEDLTET---------------------------TCQRVLSSNKKLTPQ 272
               LFLE  L      +T                           T + +L+  K L P 
Sbjct: 1943 AQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPL 2002

Query: 273  AIQVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R  ++        L+    +  +    R+    Q   A  TGR +      QN
Sbjct: 2003 PGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTA--TGRITFTEPNIQN 2060

Query: 329  LPRPSRSHE---------------ELDQIITHLPTSITSDP-----------DPLQIISD 362
            +PR                          I          P           D     S 
Sbjct: 2061 VPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSV 2120

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A    + P 
Sbjct: 2121 SMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPD 2180

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   ++   +F 
Sbjct: 2181 AVGDDLRQHAKQICYGIIYGMGA---KSLGEQMGIKENDAASYIDSFKSR--YKGINHFM 2235

Query: 483  RWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKAI 538
            R   +N  ++   +  +G       +K    + + H+    +   +  +    ++     
Sbjct: 2236 RDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2295

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            I ++       +  K   +   ML + R+ +                             
Sbjct: 2296 IQKQLETFRSTF--KSHGHRESMLQNDRTGLLPKRKLK---------------------- 2331

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                          GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2332 --------------GMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2367


>gi|148665536|gb|EDK97952.1| polymerase (DNA directed), theta, isoform CRA_b [Mus musculus]
          Length = 2119

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 78/531 (14%), Positives = 157/531 (29%), Gaps = 108/531 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   ++  +   ++ +   L  G   S    + +
Sbjct: 1605 KVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-GHSFSFTSADDI 1663

Query: 240  KTWLFLETGLHLEDLTET---------------------------TCQRVLSSNKKLTPQ 272
               LFLE  L      +T                           T + +L+  K L P 
Sbjct: 1664 AQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPL 1723

Query: 273  AIQVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R  ++        L+    +  +    R+    Q   A  TGR +      QN
Sbjct: 1724 PGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTA--TGRITFTEPNIQN 1781

Query: 329  LPRPSRSHE---------------ELDQIITHLPTSITSDP-----------DPLQIISD 362
            +PR                          I          P           D     S 
Sbjct: 1782 VPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSV 1841

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A    + P 
Sbjct: 1842 SMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPD 1901

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   ++   +F 
Sbjct: 1902 AVGDDLRQHAKQICYGIIYGMGA---KSLGEQMGIKENDAASYIDSFKSR--YKGINHFM 1956

Query: 483  RWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKAI 538
            R   +N  ++   +  +G       +K    + + H+    +   +  +    ++     
Sbjct: 1957 RDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2016

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            I ++       +  K   +   ML + R+ +                             
Sbjct: 2017 IQKQLETFRSTF--KSHGHRESMLQNDRTGLLPKRKLK---------------------- 2052

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                          GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2053 --------------GMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2088


>gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus]
          Length = 2587

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 78/531 (14%), Positives = 157/531 (29%), Gaps = 108/531 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   ++  +   ++ +   L  G   S    + +
Sbjct: 2073 KVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-GHSFSFTSADDI 2131

Query: 240  KTWLFLETGLHLEDLTET---------------------------TCQRVLSSNKKLTPQ 272
               LFLE  L      +T                           T + +L+  K L P 
Sbjct: 2132 AQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPL 2191

Query: 273  AIQVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R  ++        L+    +  +    R+    Q   A  TGR +      QN
Sbjct: 2192 PGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTA--TGRITFTEPNIQN 2249

Query: 329  LPRPSRSHE---------------ELDQIITHLPTSITSDP-----------DPLQIISD 362
            +PR                          I          P           D     S 
Sbjct: 2250 VPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSV 2309

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A    + P 
Sbjct: 2310 SMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPD 2369

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   ++   +F 
Sbjct: 2370 AVGDDLRQHAKQICYGIIYGMGA---KSLGEQMGIKENDAASYIDSFKSR--YKGINHFM 2424

Query: 483  RWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKAI 538
            R   +N  ++   +  +G       +K    + + H+    +   +  +    ++     
Sbjct: 2425 RDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2484

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            I ++       +  K   +   ML + R+ +                             
Sbjct: 2485 IQKQLETFRSTF--KSHGHRESMLQNDRTGLLPKRKLK---------------------- 2520

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                          GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2521 --------------GMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2556


>gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus]
 gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus]
          Length = 2265

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 78/531 (14%), Positives = 157/531 (29%), Gaps = 108/531 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   ++  +   ++ +   L  G   S    + +
Sbjct: 1751 KVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-GHSFSFTSADDI 1809

Query: 240  KTWLFLETGLHLEDLTET---------------------------TCQRVLSSNKKLTPQ 272
               LFLE  L      +T                           T + +L+  K L P 
Sbjct: 1810 AQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPL 1869

Query: 273  AIQVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R  ++        L+    +  +    R+    Q   A  TGR +      QN
Sbjct: 1870 PGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTA--TGRITFTEPNIQN 1927

Query: 329  LPRPSRSHE---------------ELDQIITHLPTSITSDP-----------DPLQIISD 362
            +PR                          I          P           D     S 
Sbjct: 1928 VPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSV 1987

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A    + P 
Sbjct: 1988 SMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPD 2047

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   ++   +F 
Sbjct: 2048 AVGDDLRQHAKQICYGIIYGMGA---KSLGEQMGIKENDAASYIDSFKSR--YKGINHFM 2102

Query: 483  RWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKAI 538
            R   +N  ++   +  +G       +K    + + H+    +   +  +    ++     
Sbjct: 2103 RDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2162

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            I ++       +  K   +   ML + R+ +                             
Sbjct: 2163 IQKQLETFRSTF--KSHGHRESMLQNDRTGLLPKRKLK---------------------- 2198

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                          GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2199 --------------GMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2234


>gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus]
 gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus]
 gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus]
 gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus]
 gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus]
          Length = 2544

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 78/531 (14%), Positives = 157/531 (29%), Gaps = 108/531 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   ++  +   ++ +   L  G   S    + +
Sbjct: 2030 KVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-GHSFSFTSADDI 2088

Query: 240  KTWLFLETGLHLEDLTET---------------------------TCQRVLSSNKKLTPQ 272
               LFLE  L      +T                           T + +L+  K L P 
Sbjct: 2089 AQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPL 2148

Query: 273  AIQVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R  ++        L+    +  +    R+    Q   A  TGR +      QN
Sbjct: 2149 PGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTA--TGRITFTEPNIQN 2206

Query: 329  LPRPSRSHE---------------ELDQIITHLPTSITSDP-----------DPLQIISD 362
            +PR                          I          P           D     S 
Sbjct: 2207 VPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSV 2266

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A    + P 
Sbjct: 2267 SMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPD 2326

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   ++   +F 
Sbjct: 2327 AVGDDLRQHAKQICYGIIYGMGA---KSLGEQMGIKENDAASYIDSFKSR--YKGINHFM 2381

Query: 483  RWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKAI 538
            R   +N  ++   +  +G       +K    + + H+    +   +  +    ++     
Sbjct: 2382 RDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVN 2441

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            I ++       +  K   +   ML + R+ +                             
Sbjct: 2442 IQKQLETFRSTF--KSHGHRESMLQNDRTGLLPKRKLK---------------------- 2477

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                          GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2478 --------------GMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2513


>gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum]
 gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum]
          Length = 1588

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 91/643 (14%), Positives = 193/643 (30%), Gaps = 150/643 (23%)

Query: 33   FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            FA  +        D         +++  +     TI+ +N   +   L            
Sbjct: 1072 FALFWGHSTAYYLDVAKKRETIDLIRHIVNEQQKTIIMYNCKQQIKTLHK---------- 1121

Query: 93   WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            W      +R +        V + L     + +   +L+  +C     +   D    +  E
Sbjct: 1122 WHGVEFRSRVHDPK-----VADWLLQPEGQDKTLHQLVETYCPELPLDQGQDAKLRSIFE 1176

Query: 153  ---AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               +W +        + V       L  +   E  +  +   I   G   +V+    L  
Sbjct: 1177 CYLSWHVLKN-----IEVELSKSNLLT-VFDTEMSIMRILANIELAGIGANVSTLSNLVD 1230

Query: 210  IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
            ++  E   ++++  ++     S +    +L   L        ++ ++ + Q      K  
Sbjct: 1231 LLTRELKAIERQGHAIAGRHFSFASSR-QLAKILQS------DNNSKKSLQ------KND 1277

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
             P A  +   R + S +    L  L+  +  +GR+ G      A  TGR +      QN+
Sbjct: 1278 NPLASLILKWR-KISATIGKTLQPLIRLV-ENGRIFGCYVTHTA--TGRITMHEPNLQNV 1333

Query: 330  PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
             +                  ++             R   + S+G  +V AD   +E RVL
Sbjct: 1334 AKD----------FDIDGVEVSC------------RKAFVPSQGHVMVSADFCQLELRVL 1371

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A ++ ++          D++    A+  N++  +VT++ R   K +   +          
Sbjct: 1372 AHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQRAKQIIYGII--------- 1422

Query: 450  KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                  G+     A  + T+ A                                 R  + 
Sbjct: 1423 -----YGMGSKALAEQLNTDEAQAT------------------------------RFMQT 1447

Query: 510  WRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            +R  +  V +    + +  E   + G    +A +RR +  +  K                
Sbjct: 1448 FRNAYPGVQK---YISEIIETCRKTGFVETLAGRRRFLAHINHKN--------------- 1489

Query: 569  VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYD 623
                             Q  R+           +Q  + D++   M+        +    
Sbjct: 1490 ------------GAVKSQAERQ------AVNTTIQGSAADLVKMAMVRLETVFLGEKEVK 1531

Query: 624  IVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKA 665
            +VL +HDE++ E P+    +   +L   M  +   +   P+K 
Sbjct: 1532 LVLHLHDELLYEVPEGSLGSFVRILKTEMEGSVKLSIPFPVKV 1574


>gi|297670244|ref|XP_002813286.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Pongo
            abelii]
          Length = 2728

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/533 (15%), Positives = 162/533 (30%), Gaps = 110/533 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E    Y    +   G     A    +   I+  +   ++ +   L  G   S    + 
Sbjct: 2212 KVEMPSQYCLSLLELNGIGFSTAECYESQKHIMQAKLEAIETQAYQLA-GHSFSFTSSDD 2270

Query: 239  LKTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTP 271
            +   LFLE  L      +                           +T + VL+  K L P
Sbjct: 2271 IAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2330

Query: 272  QAIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                +   R    + + V+      + +N      R+    Q   A  TGR +      Q
Sbjct: 2331 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 2388

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 2389 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGCSLNPRCQAQMEERAADRGMPF 2448

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 2449 SISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2508

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +     
Sbjct: 2509 PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGINQ 2563

Query: 481  FCRWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGK 536
            F     +N          +G       +K    +R+ H+    +   +  +    ++   
Sbjct: 2564 FMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTTVQGSAADIVKIAT 2623

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
              I ++       +  K   +   ML S R+ + +                        K
Sbjct: 2624 VNIQKQLETFHSTF--KSHGHREGMLQSDRTGLSQKR----------------------K 2659

Query: 597  LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            L               GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2660 LQ--------------GMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2697


>gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 180

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 10/177 (5%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA +G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A
Sbjct: 8   GRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLA 67

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             QVT +QR   K +   L Y         +++  G++       +      E +     
Sbjct: 68  LDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGISRADAKKYM------ERYFQRYP 118

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
             +       E A E  ++ T   R +    +  S  +       +        G A
Sbjct: 119 AVQQFMTGIRESASEKGYVETLFGR-RLYLPEIKSSNAMRRKAAERVAINAPMQGTA 174


>gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5]
 gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5]
          Length = 856

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 148/422 (35%), Gaps = 60/422 (14%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G+ +D+A    L Q        L+Q ++++   +  +     +    L+   GL  
Sbjct: 463 MQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNM-LSMPLNVNSSRQWAQVLYEHLGLES 521

Query: 252 EDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           + + +     +T +  L + +    Q+      R       + KL    E          
Sbjct: 522 KGIKKGKIGLSTNEASLKALQATYAQS----EVRGVCVGVLLTKLLNYRE---------- 567

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361
            +  L ++    +              + H    Q  T      +++P+   I     + 
Sbjct: 568 -IFKLQSTYVEPFLKRHTQ-------GKIHTTFYQNKTASSRLSSANPNLQNIPIRHDLG 619

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +    IAS G  L+  D + IE R+LA  + +Q  LKAFE  ED+++ T    F    
Sbjct: 620 RKIARGFIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFG--- 676

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
               + +R I K +   L Y  GA   +K+A T  ++       ++      ++   +NF
Sbjct: 677 -NQAQAKRPIAKAINFGLIYGMGA---RKLAQTLQISQEEAKAYME--RYFNKFPTIKNF 730

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKA-WRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              ++    +       + T    V++  ++Q   ++    + L +    T+  G A   
Sbjct: 731 LEELKARILQEG----QVTTLLGHVRRFSFKQASPKLHA--DYLREGV-NTLFQGSASDL 783

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   + +    + + ++ +++     L+          L  +  +          L EN
Sbjct: 784 VKLAMLAIYQKYESRADIKMLVQVHDELI----------LEVSEIEARELQQEIKTLMEN 833

Query: 601 IV 602
           I 
Sbjct: 834 IY 835


>gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
 gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
          Length = 856

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 148/422 (35%), Gaps = 60/422 (14%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G+ +D+A    L Q        L+Q ++++   +  +     +    L+   GL  
Sbjct: 463 MQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNM-LSMPLNVNSSRQWAQVLYEHLGLES 521

Query: 252 EDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
           + + +     +T +  L + +    Q+      R       + KL    E          
Sbjct: 522 KGIKKGKIGLSTNEASLKALQATYAQS----EVRGVCVGVLLTKLLNYRE---------- 567

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361
            +  L ++    +              + H    Q  T      +++P+   I     + 
Sbjct: 568 -IFKLQSTYVEPFLKRHTQ-------GKIHTTFYQNKTASSRLSSANPNLQNIPIRHDLG 619

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +    IAS G  L+  D + IE R+LA  + +Q  LKAFE  ED+++ T    F    
Sbjct: 620 RKIARGFIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFG--- 676

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
               + +R I K +   L Y  GA   +K+A T  ++       ++      ++   +NF
Sbjct: 677 -NQAQAKRPIAKAINFGLIYGMGA---RKLAQTLQISQEEAKAYME--RYFNKFPTIKNF 730

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKA-WRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
              ++    +       + T    V++  ++Q   ++    + L +    T+  G A   
Sbjct: 731 LEELKARILQEG----QVTTLLGHVRRFSFKQASPKLHA--DYLREGV-NTLFQGSASDL 783

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   + +    + + ++ +++     L+          L  +  +          L EN
Sbjct: 784 VKLAMLAIYQKYESRADIKMLVQVHDELI----------LEVSEIEARELQQEIKTLMEN 833

Query: 601 IV 602
           I 
Sbjct: 834 IY 835


>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
          Length = 745

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 141/787 (17%), Positives = 227/787 (28%), Gaps = 213/787 (27%)

Query: 6   IDFETRSPIDLTKCG--ICKYAEDVCV---ILFAFGFDDHP-VELW--DCVHDPVMPQVL 57
            D E    IDL + G     Y   + V     F +G  D P   LW  +      + Q  
Sbjct: 36  CDTEVM-DIDLKEVGPVGHGYVTCISVYSGEDFDYGLGDGPGTMLWIDNLDDAKDLLQEF 94

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL- 116
           K  LE+  V  V HN  F+R VL   FN  I +  +    +        S +K   E+L 
Sbjct: 95  KPWLEDAKVMKVWHNYGFDRHVL---FNEGINVLGFGGDTMHMARLSDTSRMKYSLESLT 151

Query: 117 -KLSSQKMEEGKEL--IARFCKGETHECLYD-------RNKPNHREAWRLFGEYCKGDVT 166
             L  Q+    KE+  + R  K  T   + D       +  P  RE+W  +      D  
Sbjct: 152 EDLLKQRKVPMKEIFGVPRLRKDGTDGAIVDIPPVEVMQRDPKFRESWIKYS---AMDAK 208

Query: 167 VTREIFKRLEP-LSSKEQ-------ELW--------YLDQTINDRGYCVDVALAHTLNQI 210
            T  +++ L+  L            + +         L   +  RG  V       +   
Sbjct: 209 STYNLYQHLKKELLKVGWIRQMNMMQYYQLHMRPFGELLTDLERRGMLVAKDYLADVEVQ 268

Query: 211 VDVERTKLDQELESLTY------GLVSSSRCLEKLKTWLF-----LETGLHLEDLT--ET 257
              +R    +      +      GL  +     +L T+LF      +T    E +   +T
Sbjct: 269 ARKDREGHVEAFRQWAFKQLGPDGLAMNLASSVQLTTFLFGGAENAKTKEPTEKVRVFKT 328

Query: 258 TCQRVLSSNKKLTPQAIQVFNN----------------------------RMRASRSAVL 289
             + +     +  P+  Q                                R  A      
Sbjct: 329 AREDIPDDAMEAYPKNEQEPKYVDVTVRSLGMTPDKFTVSGAPSATADVLRKLAGDPFAD 388

Query: 290 --KLNTLVEAMNSDGRLR-GTLQFLGASRTGRWSGCVFP----PQNLPRP-SRSHEELDQ 341
             K     E            + F   +  G     +       Q L    +R H  L+ 
Sbjct: 389 PPKYGAAYEFFGGGEAGHEACVAFFSLTAIGSIDTMIANFLTSLQTLADDQNRVHCSLN- 447

Query: 342 IITHLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           I T      +  P+     +       +R   +AS G  L+VAD   +E R+LA M    
Sbjct: 448 INTETGRLSSRKPNMQNQPALEKDKYKIRQAFMASPGNNLIVADYGQLELRLLASMTDCT 507

Query: 397 WKLKAFETGEDLYVTTYARSF--------------------NVAPAQVTKDQ----RAIG 432
             + AFE G D +  T    F                       P  + KDQ    R   
Sbjct: 508 SMIDAFEAGGDFHSRTALGMFKYIQDAVANGDVLLEWDYSKGEPPKPMLKDQYASERRKA 567

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +  ++ Y   A     ++   G++L     ++                          
Sbjct: 568 KTLNFSIAYGKTA---HGLSQDWGVSLKEAEEML-------------------------- 598

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          +AW      V +      +A                         
Sbjct: 599 ---------------RAWYDSRPEVEKWQQNTKKAA------------------------ 619

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
           ++      ++   R L +   GNNR  L    R                +Q  + D+   
Sbjct: 620 RNYGITRTLMGRYRHLPHAMEGNNRKRLGHAERAS----------INTPIQGGAADVAMM 669

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGL---- 661
            M+         K G+ +++ VHDE++ E P +T E     +   M     W  GL    
Sbjct: 670 AMIKINDSLLLKKLGWILLMQVHDEVILEGPEETAEEAFEEVVKCMQEP--WVLGLDKTK 727

Query: 662 -PLKAEG 667
            PL  +G
Sbjct: 728 VPLLVDG 734


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 109/726 (15%), Positives = 209/726 (28%), Gaps = 175/726 (24%)

Query: 6   IDFETRSPID------LTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDP------ 51
           ID ET           + K  +  Y  ++   ++                 H        
Sbjct: 211 IDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMKGN 270

Query: 52  ---VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               + + L++ LE  D+  +AHN  F+   L+A  ++ + I  W    +L         
Sbjct: 271 QIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW--DTMLIHIIDYRGE 328

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             +  + L      M  G +      K +  +       P     W +   Y   D  VT
Sbjct: 329 RYSWSKRLAWLETDMG-GYDDALDGEKPKGEDEGNYDLIP-----WDILKVYLADDCDVT 382

Query: 169 REIFKRLEPLSSKEQE---LW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + ++  PL  + +E   LW        Y    I   G  VD      L    + E ++
Sbjct: 383 FRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEISR 442

Query: 218 LDQELES-------------------LTYGLVSSSR------------------------ 234
           L+ ++                     +   + S++R                        
Sbjct: 443 LEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDKIN 502

Query: 235 --CLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               ++L   LF   GL      +    +T    L      +     +   R +A+    
Sbjct: 503 FGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFR-KANHLYN 561

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             ++ L   ++ D  +  +    G + TGR S      Q  PR   +             
Sbjct: 562 NFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLFQYNFEIKKM 620

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
             +                    +G  +V  D + +E R+L       + +  + +G DL
Sbjct: 621 FNSRF-----------------GDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADL 663

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    + +F VA  +V+KDQR   K ++  + YQ  A+   +     G+ ++     +  
Sbjct: 664 HKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFI 723

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               + +     + R  +++                                        
Sbjct: 724 KKYFKRFPKVSKWIRDTKKH---------------------------------------- 743

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQL 587
            + I   K +    R                  LP   S+         R  +NT  +  
Sbjct: 744 VKDISTVKTLTGATRN-----------------LPDIDSIDQSKANEAERQAVNTPIQGT 786

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-M 646
             + T            +   IL    +  +     I +TVHD IV + P  +    +  
Sbjct: 787 GSDCT------------LMSLILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKK 834

Query: 647 LYHLMT 652
           + H+M 
Sbjct: 835 VKHIME 840


>gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus]
          Length = 2306

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/532 (14%), Positives = 165/532 (31%), Gaps = 109/532 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A + +   I+  +   ++ +   L  G   S    + +
Sbjct: 1791 KVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 1849

Query: 240  KTWLFLETGLHLEDLTET---------------------------TCQRVLSSNKKLTPQ 272
               LFLE  L      ++                           T + VL+  K L P 
Sbjct: 1850 AEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHPL 1909

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 1910 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 1967

Query: 329  LPR------PSRSHEELDQIITHLPTS----------ITSDPDPLQIISDC--------- 363
            +PR      P+   E    ++                 T +P P   + +          
Sbjct: 1968 VPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPFS 2027

Query: 364  --VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   +   G  ++ AD + +E R+LA ++ ++  ++   TGED++ +  A    + P
Sbjct: 2028 VSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMMEP 2087

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +    +F
Sbjct: 2088 ESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGINHF 2142

Query: 482  CRWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKA 537
             +   +N          +G       +K    + + H+    +   +  +    ++    
Sbjct: 2143 MKETVKNCRRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATV 2202

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
             I ++       +  K   +   +L S ++ ++                           
Sbjct: 2203 NIQKQLETFHSTF--KSHGHREGVLQSDKTGLFPKRRLP--------------------- 2239

Query: 598  TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                           G+    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2240 ---------------GVFCPVRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2275


>gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus]
          Length = 2585

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/532 (14%), Positives = 165/532 (31%), Gaps = 109/532 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A + +   I+  +   ++ +   L  G   S    + +
Sbjct: 2070 KVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2128

Query: 240  KTWLFLETGLHLEDLTET---------------------------TCQRVLSSNKKLTPQ 272
               LFLE  L      ++                           T + VL+  K L P 
Sbjct: 2129 AEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHPL 2188

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 2189 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 2246

Query: 329  LPR------PSRSHEELDQIITHLPTS----------ITSDPDPLQIISDC--------- 363
            +PR      P+   E    ++                 T +P P   + +          
Sbjct: 2247 VPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPFS 2306

Query: 364  --VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   +   G  ++ AD + +E R+LA ++ ++  ++   TGED++ +  A    + P
Sbjct: 2307 VSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMMEP 2366

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +    +F
Sbjct: 2367 ESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGINHF 2421

Query: 482  CRWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGKA 537
             +   +N          +G       +K    + + H+    +   +  +    ++    
Sbjct: 2422 MKETVKNCRRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATV 2481

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
             I ++       +  K   +   +L S ++ ++                           
Sbjct: 2482 NIQKQLETFHSTF--KSHGHREGVLQSDKTGLFPKRRLP--------------------- 2518

Query: 598  TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                           G+    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2519 ---------------GVFCPVRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2554


>gi|333023285|ref|ZP_08451349.1| putative gp44 [Streptomyces sp. Tu6071]
 gi|332743137|gb|EGJ73578.1| putative gp44 [Streptomyces sp. Tu6071]
          Length = 624

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 94/516 (18%), Positives = 162/516 (31%), Gaps = 59/516 (11%)

Query: 15  DLTKCGI--CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           D    G+    +       L  FG +     +             + AL +++  I  + 
Sbjct: 43  DTETTGLDWWNWGNGFHCRLAQFG-NRSEAYVLPVERGTKFASAARIALRDSERVITHNG 101

Query: 73  SYFERTVLKACFNLDIPI--HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           + F+  V +    + +     + I T   +     P A+K  G   KL            
Sbjct: 102 ASFDAHVAEVALGIPMEQLSPKIIDTKPTSHLVD-PRAVKEGGPGAKLEELIKFYIDAGA 160

Query: 131 ARFCKGETHECLYDRNKPNHREAWRL-------FGEYCKGDVTVTREIFKRL-EPLSSK- 181
           A   KG     L  + K    E W L       F  Y   D      +F  L   + S+ 
Sbjct: 161 AEEVKGSM-TALAKKYKVKKEEIWSLVDLFDKDFLLYAGMDPVWAFRLFDILYHKIPSRS 219

Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E    Y+   +   GY  D+  A    + V++   + + E ++ T G V + 
Sbjct: 220 MQKGLFAWEHRTAYVTSLMERTGYAHDLEYAE--RECVNLTNQQREWESKAQTLG-VENV 276

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLTPQAIQVFNNRMRASRSAVLKLN 292
              +++   L +  G  L   T+     V       +     +   N  +A +       
Sbjct: 277 NSNQQIIDRLTV-LGYKLTKKTKKGNISVDDDVLTSIAHPLTEAIVNAKKAGKWRKTWFE 335

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP--RPSRSHEELDQIITHLPTSI 350
           + ++  + +GR+  ++    A           P Q LP   P   HE L           
Sbjct: 336 SAIKGRDKNGRVHCSINSCQARTARMTITGAIPAQTLPAGDPYVRHEFLADAAVLGENGE 395

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                             +  E       D + +E RV+A  +G+   L AF  G DL+ 
Sbjct: 396 ------------------VLEEEHVSCSIDFSNMELRVMAAASGDPVMLDAFNRGIDLHN 437

Query: 411 TTYARSFNVAPAQVTKD-QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T   +F   P  +TK  +R  GK    A+G+ GG   ++ +    G+        V+  
Sbjct: 438 ITAIAAFGPMPEGMTKHPKRKAGKGTNFAVGFGGG---WKAVTDGFGVPEPDAKKAVEAF 494

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                        +   +     AI    I TA  R
Sbjct: 495 WG------TYKGVKRFADQLQRQAIRTGHIYTATGR 524



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 602 VQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDT 639
           +Q+ +RDI    ++   KAGY   + L +HDEIV   P +
Sbjct: 541 IQSSARDITVRALLELHKAGYTPWMRLVIHDEIVFSFPKS 580


>gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 681

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 124/360 (34%), Gaps = 52/360 (14%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-- 107
           D    +  K+  E+ ++  V+ +   +  +      ++I         +L      PS  
Sbjct: 353 DQKFVENFKKYFEDENINKVSFDIKEDIVLFNK-LGIEINFP--YDDTMLMHYLIDPSRS 409

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG---D 164
           +      +      ++   ++L+ +    ++++ L ++    +  +     E       D
Sbjct: 410 SYDLKTFSQAFLKYEVLNEEDLLGKGRNKKSYKDLSEKELGKYLSSIINAIEDSLDILTD 469

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                 +++        E +L  +   +   G+  D      +   V +E   L++ +  
Sbjct: 470 KLKELSMYEL---YKDCEIKLSKVLAEMEITGFICDKNELEKIKDEVSLELEDLEKVIYE 526

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF +  L +   T+T      +VL   +   P   ++   R 
Sbjct: 527 LA-GSEFNINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERYR- 584

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     L +L E ++ DGR+R T                   QN             
Sbjct: 585 EMYKLKSTYLESLEECIDEDGRIRSTF-----------------KQN------------- 614

Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +T      +++P+   +         +R    A + K L+ AD + IE RVLA +A ++
Sbjct: 615 -VTATGRLSSTEPNLQNLPIRTEEGRKIRKAFKADKDKVLIDADYSQIELRVLAHLANDK 673


>gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus]
          Length = 858

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 97/611 (15%), Positives = 187/611 (30%), Gaps = 135/611 (22%)

Query: 70  AHNSYFERTVLKACFNLDIPI---HRWICTLVLARSNGLPSALKAVGEALKL-------- 118
           AHN  F R +L       +P+   +       + +  G   + K V + + L        
Sbjct: 286 AHN-QFARNMLSQVLKRKLPVVCFNAKDFVRTVLQFLGDADSWKHVADFVGLDPRIAAWL 344

Query: 119 --SSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     + L+     K  T +        +     +      +    +   +  +L
Sbjct: 345 IDPRDATLSFEHLVAKYLEKSTTVKVSSTYGNASRNIVNQNVHMNLRILHRLMMTLCSKL 404

Query: 176 EPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +  S      + E  L  +   +      V+       + ++     +L+QE   +  G 
Sbjct: 405 KAYSLWQLFWTLELPLIPILAVMERHSVQVNKEEMERTSALLGARLKELEQEAHFVA-GE 463

Query: 230 VSSSRCLEKLKTWLFLETGL--------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNN 279
                   +L+  LF +  L            L +  +T + VL++ + L P    +   
Sbjct: 464 RFLITSNNQLREILFDKLKLHLLSQRRLPKTGLQKYPSTSEAVLNALQDLHPLPKIILEY 523

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R      +       + A   +G +  T    G + TGR S      Q + R      + 
Sbjct: 524 RQVHKIKST--FVDGLLACMREGSISSTWNQTG-TVTGRLSAKHPNIQGISRHPIHITKP 580

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                     +T  P          R+  ++S G   + AD + IE R+LA ++G+   L
Sbjct: 581 QNTKGKEDEILTISP----------RAMFVSSAGHTFLAADFSQIELRILAHLSGDAELL 630

Query: 400 KAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           K F   E  D++ T  ++  N+    VT   R   K +  ++ Y  G    +++A+  G+
Sbjct: 631 KLFHESEREDVFSTLTSQWKNMPVEHVTHVDREQTKKVVYSVVYGAGK---ERLAACLGV 687

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +   A                                         R  + + QK+ ++
Sbjct: 688 AVPEAA-----------------------------------------RFLETFLQKYKKI 706

Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           S+       A  Q  + G    +  +RR +P +             P  R+   R     
Sbjct: 707 SDF---AQAAIAQCHQRGYVTSVTGRRRPLPRI---------CAQEPHLRAQAERQ---- 750

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVH 629
                                   +VQ  + D+    M+    A          +V  +H
Sbjct: 751 --------------------AVNFVVQGSAADLCKMAMIRIFAAVSSSPTLTARLVAQIH 790

Query: 630 DEIVCETPDTD 640
           DE++ E  D  
Sbjct: 791 DELLFEVEDAQ 801


>gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii]
 gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 16/212 (7%)

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAM---NSDGRL-RGTLQFLGASRTGRWSGCVFPPQ 327
           +   +      + R     L+  +E M   +S GR+    ++     +  +    +F   
Sbjct: 289 EVGAMQRLHEESVRRRAQVLDENLEIMAPYDSTGRVVHLVMEHARLDKLIQSYTGLFLQH 348

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS---------DCVRSCVIASEGKKLVV 378
              R  R +  L+Q+ T       S  + + +              R  ++A  G  L+ 
Sbjct: 349 VDRRTGRVYPTLNQVGTATGRLSMSGANLMALPHDKEEFGEHLRNFRRALVARPGWLLLA 408

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RV+A +  +     AF    D++  T AR F V    VT  QR  GK +   
Sbjct: 409 ADYSQVELRVIAHITQDPTLASAFRERRDVHAQTAARVFRVPLGAVTPAQRQAGKQVNFG 468

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           L Y  GA    K+A   GL  N  +  + T  
Sbjct: 469 LVYGMGA---AKLARDIGLPDNEASDFIHTFR 497


>gi|145334203|ref|NP_001078482.1| DNA-directed DNA polymerase family protein [Arabidopsis thaliana]
 gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis
            thaliana]
 gi|332660705|gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana]
          Length = 2154

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 102/643 (15%), Positives = 198/643 (30%), Gaps = 124/643 (19%)

Query: 57   LKEALENTDVTIVAHNSYFERTVLK-------ACFNLDIPIHRWICTLVLARSNGLPSAL 109
            + + + N +      N   +  VLK        C  L++P       LV      +P   
Sbjct: 1561 ISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCTRLNLP-EGIRDELVDGSWLMMPPLH 1619

Query: 110  KA-------VGEALKLSSQK------MEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
             +       V   L    ++       +E K+ ++       +     RN     +  R+
Sbjct: 1620 TSHTIDMSIVIWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRN-----QIRRV 1674

Query: 157  FGEYCKGDVTVTREIF----------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                C   V  TR +           + L+ L++ E  L  +   +   G  +D+     
Sbjct: 1675 AHNGCCRRVAQTRALCSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLR 1734

Query: 207  LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQ 260
               I+  +   L+++   L  G+  S      +   LF +  L +        L  +T +
Sbjct: 1735 ARNILRDKLRSLEKKAFELA-GMTFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDK 1793

Query: 261  RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ--------FLG 312
              L   +   P    +  +R  A       LN  + ++ S  +LR + Q           
Sbjct: 1794 HCLDLLRNEHPVVPIIKEHRTLAKL-----LNCTLGSICSLAKLRLSTQRYTLHGRWLQT 1848

Query: 313  ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            ++ TGR S      Q     S  HE ++  +      ++SD D  +I +   R   +   
Sbjct: 1849 STATGRLSIEEPNLQ-----SVEHE-VEFKLDKNGRDVSSDADRYKINA---RDFFVPTQ 1899

Query: 372  EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRA 430
            E   L+ AD + IE R++A  + +   +        D++    A+    A   V+   R 
Sbjct: 1900 ENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRD 1959

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K +   + Y  GA    +    T           K  S    +    ++         
Sbjct: 1960 QTKRLIYGILYGMGANRLAEQLECTSDEAKE-----KIRSFKSSFPAVTSWLNETISFCQ 2014

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
            E        G      ++   +     ++  ++  +    ++  G A    K   + +  
Sbjct: 2015 EKGYIQTLKGR-----RRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAADIIKIAMINI-- 2067

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                               Y  +  +     +++   TR +   G+              
Sbjct: 2068 -------------------YSAIAEDVDTAASSSSSETRFHMLKGR-------------- 2094

Query: 611  AEGMMNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652
                         I+L VHDE+V E  P   +  A +L   M 
Sbjct: 2095 -----------CRILLQVHDELVLEVDPSYVKLAAMLLQTSME 2126


>gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 2147

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 181/576 (31%), Gaps = 148/576 (25%)

Query: 123  MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---------- 172
             +E K+ ++       +     RN     +  R+    C   V  TR +           
Sbjct: 1639 DKEVKKRLSPEAAEAANRSGRWRN-----QIRRVAHNGCCRRVAQTRALCSALWKILVSE 1693

Query: 173  KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            + LE L++ E  L  +   +   G  VD+        I+  +   L+++   L  G+  S
Sbjct: 1694 ELLEALTTTEMPLVNVLADMELWGIGVDIEGCLRARNILRDKLRSLEKKAFELA-GMTFS 1752

Query: 233  SRCLEKLKTWLFLETGLHLE------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                  +   LF +  L +        L  +T +  L   +   P    +  +R  A   
Sbjct: 1753 LHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLAKL- 1811

Query: 287  AVLKLNTLVEAMNSDGRLRGTLQ--------FLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                LN  + ++ S  +LR + Q           ++ TGR S      Q     S  HE 
Sbjct: 1812 ----LNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQ-----SVEHE- 1861

Query: 339  LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
            ++ I+      + SD D  +I +   R   +   E   L+ AD + IE R++A  + +  
Sbjct: 1862 VEFILDKNGKDVNSDADSYKINA---RDFFVPTQENWLLLTADYSQIELRLMAHFSRDSS 1918

Query: 398  KLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +        D++    A+    A   V+   R   K +   + Y              G
Sbjct: 1919 LISQLRQPEGDVFTMIAAKWTGKAEGSVSPHDRDQTKRLIYGILY--------------G 1964

Query: 457  LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
            +  N  A  ++ +S     ++A+   R                         +++     
Sbjct: 1965 MGANRLAEQLECSS-----DEAKEKIR-------------------------SFKSSFPA 1994

Query: 517  VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            V+   NE                         +   ++K  +  +    R L     GN 
Sbjct: 1995 VTSWLNE------------------------TISFCQEKGYIQTLKGRRRFLSKIKFGNA 2030

Query: 577  RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---------------- 620
            +        +  R+         ++ Q  + DI+   M+N   A                
Sbjct: 2031 KEK-----SKAQRQ------AVNSMCQGSAADIIKIAMINIYSAIAEDVDTTASSSSSET 2079

Query: 621  -------GYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                      I+L VHDE+V E   +    A+ML  
Sbjct: 2080 RFHMLKGRCRILLQVHDELVLEVDPSYVKVAAMLLQ 2115


>gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 531

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 101/498 (20%), Positives = 164/498 (32%), Gaps = 77/498 (15%)

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK------ 173
             ++   KE  A F     H    +   P   E       Y   D+ +   I +      
Sbjct: 7   RYRLPVSKEARAWF--PGLHTRPTEWAAPFPAEQL----VYMVQDIEIPYAIAQHQRPRI 60

Query: 174 ---RLEPLSSKEQELWYLDQTINDRGYCVDVA-----------------------LAHTL 207
              +L  +   E E       +  RG C+DV                        L   L
Sbjct: 61  KEQKLARVVHLENEAVPALAAMEMRGVCIDVERWRSILARKQARQQALEPGLRETLGTAL 120

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW-LFLETGLHLEDLT-ETTCQRVLSS 265
            +  D  +  L +E + L     ++        +W LF   GL     T +   Q     
Sbjct: 121 QRACDDYQVALTREEKRLVEAYRANPAQ----SSWGLFRRKGLAQWQATHKKPPQPKERG 176

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
              L      +   R      +     TL         +   LQ+    +     G    
Sbjct: 177 TINLASPPQLLAALRALGVPVSATDEETLEPYAKEHAAVASLLQWKELHKFASSFGENLL 236

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC--------VRSCVIASEGKKLV 377
                   R   +  QI       I S P+  QI ++         VR C +A  G +++
Sbjct: 237 AMVDT-DGRLRTDYAQIGAASGRIICSKPNLQQIPAEEEEEGQEEPVRHCFVAPPGYRIL 295

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-------RA 430
            ADL+ IE R+LA ++ +Q  L+ F  G+DL+  T    F+++P   TK         R 
Sbjct: 296 KADLSNIELRILAEVSRDQTMLRLFAEGKDLHAETAKLMFHLSPETDTKRHLYKGVPGRK 355

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
           I K +   L Y  GA     +A+  G++L T   L++T      +E      RW+     
Sbjct: 356 IAKTINFGLAYGMGAN---GLANRAGVDLPTAKSLIRT-----YFETYRGIARWLPLTAK 407

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           + A+E  +  T   R  +          +   E+  + E++ +N         R      
Sbjct: 408 Q-ALEQGYAVTLAGR--RRTFASIPTSVDWNREVRASAERSAKN------HPIRGTNADI 458

Query: 551 MKKDKNNLILMLPSGRSL 568
           +K+    L   LPSG  L
Sbjct: 459 LKRALALLHASLPSGAHL 476


>gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Ailuropoda
            melanoleuca]
          Length = 2634

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/527 (15%), Positives = 157/527 (29%), Gaps = 100/527 (18%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 2120 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2178

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2179 AEVLFLELKLPPNGEIKNQNSKKTLGSTRRGNDNGRKLKLGKQFSTSKDVLNKLKALHPL 2238

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 2239 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRVTFTEPNIQN 2296

Query: 329  LPRP------------------SRSHEELDQIITHLPTSITSDPDPLQ--------IISD 362
            +PR                    +    +++         +     ++          S 
Sbjct: 2297 VPRDFEIKMPTVVGESPPSQALGKGLLPMNRGKEKSCGINSGHQAQMEERASDRGMPFSV 2356

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + P 
Sbjct: 2357 SMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPE 2416

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +    +F 
Sbjct: 2417 SVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGINHFM 2471

Query: 483  RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
            R   +N       D F+ T   R ++     +           +    T   G A    K
Sbjct: 2472 RETVKNCKR----DGFVQTILGR-RRYLPGINDNNPYHKAHAERQAINTTVQGSAADIVK 2526

Query: 543  RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
               V             +               +R  +  + R         G L +  +
Sbjct: 2527 VATVN------------IQKQLETFHSTFKSHGHREGMLQSERT--------GLLPKRKL 2566

Query: 603  QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            Q V   I           G   +L +HDE++ E  + D    + +  
Sbjct: 2567 QGVFCPI----------RGGFFILQLHDELLYEVAEEDVVQVAQIVK 2603


>gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior]
          Length = 2176

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 90/518 (17%), Positives = 176/518 (33%), Gaps = 94/518 (18%)

Query: 159  EYCKGDVTV---TREIFKRLEPLS--------SKEQELWYLDQTINDRGYCVDVALAHTL 207
                  V        I  +LE L+          E  +      +   G  V++     L
Sbjct: 1726 RSAAEAVLTWHMMDNIMNKLEELNPALLYTFREVEMRIMTTLACMELSGIGVNLKSLQEL 1785

Query: 208  NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
            + +V  E   L+ +   L  G   +    +++   L    GL+ +    +T + VL    
Sbjct: 1786 SSVVSNEMQSLETKAYDLA-GRKFNFSSSKEVGQVL----GLYKDKKV-STSKTVLEKCD 1839

Query: 268  KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
               P +  V + R + + +    +  L+     D R+RG       + TGR S      Q
Sbjct: 1840 N--PISTLVISWR-KLNATKTKMIYPLLNLAQGDSRVRGNCITC--TVTGRVSMHEPNLQ 1894

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            N+P+                    +D + +      VR   +   G  ++ AD   +E R
Sbjct: 1895 NVPKD----------------FSFADNNLVV----SVRMAFVPVLGNIMLSADYCQLELR 1934

Query: 388  VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
            +L   + +    K  +   D++    A+  NVA  QVT + R   K +   + Y  G   
Sbjct: 1935 LLTHFSQDSILCKIMKQSGDIFKNIAAKWNNVAEEQVTNEMRQRTKQLCYGMIYGMGV-- 1992

Query: 448  FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             + +A    ++       +++              +W+ +   E A  D ++ T   R +
Sbjct: 1993 -KSLAENLCISEPEAQEFLES-----FMSAYPGIYKWLNDILEE-AHHDGYVTTLLGR-R 2044

Query: 508  KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            + +    S  S +  +  +    T   G A    K+  + +      ++ +    P   +
Sbjct: 2045 REFPDLSSTKSSVRAQAERQSVNTKVQGSAADIVKKAMISI------EDKIRCYFP-DSA 2097

Query: 568  LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
            +++ +V  +R                  KL  N+ Q                 G  +VL 
Sbjct: 2098 IIFPEVHASR------------------KLRSNLQQ----------------RGGYLVLQ 2123

Query: 628  VHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLK 664
            +HDE++ E    D    A+++   M +       LP+K
Sbjct: 2124 LHDELLYEVNLADLKKFAAIIRESMENVCQLTVPLPVK 2161


>gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus]
 gi|297470916|ref|XP_002684835.1| PREDICTED: polymerase (DNA directed), theta-like [Bos taurus]
 gi|296491393|gb|DAA33456.1| polymerase (DNA directed), theta-like [Bos taurus]
          Length = 2593

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/533 (14%), Positives = 158/533 (29%), Gaps = 111/533 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 2078 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLA-GHSFSFTSSDDI 2136

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  + L P 
Sbjct: 2137 AEVLFLELKLPPNGEGKNQGIKKTLGSTRRGNDNGRKLRLGKQFSTSKGVLNKLRALHPL 2196

Query: 273  AIQVFNNRMRA-SRSAVLKLNTLVEAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +   R    + + V+      + +N      R+    Q   A  TGR +      QN
Sbjct: 2197 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 2254

Query: 329  LPRP----------------------------SRSHEELDQIITHLPTSITSDPDPLQII 360
            +PR                              R  +              +    +   
Sbjct: 2255 VPRDFEIKMPAVVEESPPSQALGKGLLPMGRGGRKKDCAMNAGRQTKVEERASDRGMP-F 2313

Query: 361  SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
            S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 2314 SVSMRHAFVPFTGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2373

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  + R   K +   + Y  GA   + +    G+  N  A  + +  +   +    +
Sbjct: 2374 PESVGDNLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGISH 2428

Query: 481  FCRWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGK 536
            F R   +N          +G       +K    + + H+    +   +  +    ++   
Sbjct: 2429 FMRETVKNCKRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTRVQGSAADIVKIAT 2488

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
              I ++       +  K   +   +L S R+ +                          K
Sbjct: 2489 VNIQKQLETFHSTF--KSHGHREGLLQSERTGLLPK----------------------KK 2524

Query: 597  LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            L               GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 2525 LQ--------------GMFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 2562


>gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens]
          Length = 2724

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/456 (15%), Positives = 141/456 (30%), Gaps = 74/456 (16%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 2209 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 2267

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 2268 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 2327

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 2328 PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 2384

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 2385 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2444

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 2445 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2504

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +     
Sbjct: 2505 PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGINQ 2559

Query: 481  FCRWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGK 536
            F     +N          +G       +K    +R+ H+    +   +  +    ++   
Sbjct: 2560 FMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIAT 2619

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              I ++       +  K   +   ML S R+ + R 
Sbjct: 2620 VNIQKQLETFHSTF--KSHGHREGMLQSDRTGLSRK 2653


>gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens]
          Length = 1762

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/456 (15%), Positives = 141/456 (30%), Gaps = 74/456 (16%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 1247 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 1305

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 1306 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPL 1365

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 1366 PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 1422

Query: 328  NLPR------PSRSHEE----------LDQIITHLPTSITSDPDPLQIISDC-------- 363
            N+PR      P+   E           L           + +P     + +         
Sbjct: 1423 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 1482

Query: 364  ---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    + 
Sbjct: 1483 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 1542

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   +     
Sbjct: 1543 PESVGDDLRQQAKQICYGIIYGMGA---KSLGEQMGIKENDAACYIDSFKSR--YTGINQ 1597

Query: 481  FCRWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENGK 536
            F     +N          +G       +K    +R+ H+    +   +  +    ++   
Sbjct: 1598 FMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIAT 1657

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              I ++       +  K   +   ML S R+ + R 
Sbjct: 1658 VNIQKQLETFHSTF--KSHGHREGMLQSDRTGLSRK 1691


>gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b]
          Length = 190

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 10/175 (5%)

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTL----QFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
           +      +T  + +N    L   +    Q    ++         P     +  R H   +
Sbjct: 14  KKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDALPKLVD-KNYRLHTTFN 72

Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
           Q +       ++ P+   I     +   +R+  IA E   LV AD +  E R+ A MAG+
Sbjct: 73  QDVVSTGRLSSTHPNLQNIPIRSTLGKKIRNAFIADEDNILVSADYSQFELRLAAIMAGD 132

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           +  +  F    D++  T +  + +   QVT +QR   KV+   + Y         
Sbjct: 133 EDLINDFNNDIDIHTKTASDVYKIPMDQVTSNQRRNAKVINFGVLYGMSPHGLSA 187


>gi|332259946|ref|XP_003279044.1| PREDICTED: DNA polymerase nu-like [Nomascus leucogenys]
          Length = 1502

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/522 (17%), Positives = 181/522 (34%), Gaps = 57/522 (10%)

Query: 74   YFERTVLKACFNLDIPI---HRWICTLVLARSNGLPSALKAVGEALKL----------SS 120
             F R VL        P+   +      +L +  G   + K V + + L           S
Sbjct: 902  QFARNVLFQTLKCKCPVICFNAKDFVRILLQFFGNDGSWKHVADFVGLDPRIAAWLIDPS 961

Query: 121  QKMEEGKELIARFC------KGETHECLYDRNKPNHREAWRLFGEY-CKGDVTVTREIFK 173
                  ++L+ ++C      K  +      RN  N      L   Y    D+    + + 
Sbjct: 962  DATPSFEDLVEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKILYRLTMDLCSKLKDYG 1021

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +   + E  L  +   +      V+       + ++     +L+QE   +  G     
Sbjct: 1022 LWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVA-GERFLI 1080

Query: 234  RCLEKLKTWLFLETGLHLED-----------LTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +L+  LF +  LHL                +T + VL++ + L P    +   R  
Sbjct: 1081 MSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 1140

Query: 283  ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                +       + A    G +  T    G + TGR S      Q + +          I
Sbjct: 1141 HKIKST--FVDGLLACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISK--------HPI 1189

Query: 343  ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                P +     D +  IS   R+  ++S+G   + AD + IE R+LA ++G+   LK F
Sbjct: 1190 QITTPKNFKGKEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLF 1247

Query: 403  ETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            +  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G    +++A+  G+ + 
Sbjct: 1248 QESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK---ERLAACLGIPVQ 1304

Query: 461  TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
              A  +++    ++++  ++F R       +       +G      ++   + H+   +L
Sbjct: 1305 EAAQFLESFL--QKYKKIKDFARAAIAQCHQTGYVVSIMGR-----RRPLPRIHAHDQQL 1357

Query: 521  WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
              +  +     +  G A    K   + +         L   L
Sbjct: 1358 RAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASGTLTARL 1399


>gi|281339993|gb|EFB15577.1| hypothetical protein PANDA_004677 [Ailuropoda melanoleuca]
          Length = 769

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 135/368 (36%), Gaps = 37/368 (10%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +      VD       + ++     +L+QE   +  G         +L+ 
Sbjct: 426 ELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVA-GEQFLITSNNQLRE 484

Query: 242 WLFLETGLHLEDLTET-----------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            LF +  L L    ET           T + VL + + L P    +   R R  ++    
Sbjct: 485 VLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYR-RVHKTKSAF 543

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L+  M   G +  T    G + TGR S      Q + +      +           +
Sbjct: 544 VDGLLACMRK-GSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQITKPQNFKGVEGAML 601

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DL 408
           T  P          RS  +A EG   + AD + IE R+LA ++G+   LK F+  E  D+
Sbjct: 602 TISP----------RSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDV 651

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + T  ++   V P  VT   R   K +  +  Y  G    +++A+  G+ +   A  +++
Sbjct: 652 FSTLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGK---ERLAACLGVTVQEAAWFLES 708

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               ++++  ++F +       +       +G      ++   +  ++  +L  +  +  
Sbjct: 709 FL--QKYKKVKDFVQTTIAQCHQTGYVASIMGR-----RRPLPRVRAQDQQLRAQAERQA 761

Query: 529 EQTIENGK 536
              +  G 
Sbjct: 762 VNFVVQGT 769


>gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 145

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 5/143 (3%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F + 
Sbjct: 4   GRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 63

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT +QR   K +   L Y   A     ++    +        +      E +     
Sbjct: 64  LDSVTGEQRRSAKAINFGLIYGMSAF---GLSRQLNIPRKEAQKYMD--LYFERYPGVLE 118

Query: 481 FCRWMQENHPEHAIEDLFIGTAC 503
           +    +    E    +   G   
Sbjct: 119 YMERTRAQAKEQGYVETLEGRRL 141


>gi|298706211|emb|CBJ29252.1| DNA polymerase [Ectocarpus siliculosus]
          Length = 1219

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 138/525 (26%), Gaps = 115/525 (21%)

Query: 165  VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            ++   E  K L      E     +   +   G           +  +      L +    
Sbjct: 731  ISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVK 790

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNN 279
               G   +    +++   LF    L         +  +T   VL   +        +   
Sbjct: 791  AVGGRDFNLASPDQVADVLFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEF 850

Query: 280  R--MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R   +   + V KL        +        Q  GA+                   R H 
Sbjct: 851  RGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGAA-------------------RIHA 891

Query: 338  ELDQIITHLPTSITSDPDPLQII----------SDCVRSCVIASEGKKLVVADLAGIEAR 387
              +Q          S P+  Q+              VR    A+    L+ AD + IE R
Sbjct: 892  TWNQTSARTGRLSCSRPNLQQMPKGSDPLAGVEGVNVRDAFSATRSFTLMAADYSQIEMR 951

Query: 388  VLAWMAGEQWKLKAFET------------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            VLA    +      F T            G D+Y    A+ F      V+ ++R   KV+
Sbjct: 952  VLADACRDPGLRNLFATLGGTNDAGASTGGGDVYRKLAAQVFAKEEHGVSDEERNRAKVV 1011

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN-SAPEEWEDAENFCRWM------QEN 488
             L + Y  G       A    +  +    LV++   A    E      R        Q +
Sbjct: 1012 CLGITYGMGTPQV---AKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRYGTPCRHQIS 1068

Query: 489  HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                A E+ ++ T   R +      +SR +    +  +    ++  G A    K   V +
Sbjct: 1069 QRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLV 1128

Query: 549  VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                                                    R   +   L E        D
Sbjct: 1129 --------------------------------------ARRLDAWRSSLDE------GLD 1144

Query: 609  ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653
                 M             +HDE+V E P  +E +   L  L+  
Sbjct: 1145 CPRLIM------------QIHDELVLECPACEE-DLERLKGLLAD 1176


>gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens]
          Length = 831

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 112/737 (15%), Positives = 201/737 (27%), Gaps = 182/737 (24%)

Query: 35  FGFDDHPVE---LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-------KACF 84
           F +D          DCV   V+  V      +     V HN  F+R V+       +   
Sbjct: 133 FSYDGEAAGKALFVDCVDAAVL-DVFAPWFADESRRKVWHNYGFDRHVVENHGLACRGFA 191

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE----THE 140
              + + R   +  L    G   +L+A+   L  + +     K L   F +         
Sbjct: 192 GDTMHMARLHDSSRLRTHGGDGYSLEALSRDLISAGEAKVSMKALFPEFFRKTAFADRAN 251

Query: 141 CLYDRNKP----------NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-------- 182
               R+                    F  Y   D   T ++   L     ++        
Sbjct: 252 GSASRDAARRGLDILRMQTDDATRDAFVCYAAYDAKSTWQVHDALRRRLERQAWAPMTDD 311

Query: 183 -----------QELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                       + +         +   +   G  VD       + + DVE+     +  
Sbjct: 312 PPRSPETPKTMWDFYERYFVPFGKVLTDMEAAGIYVD-----AASHLTDVEKAATADKAA 366

Query: 224 SLT------------YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +L              G + +    ++++T LF   G  +   T    +     +  L P
Sbjct: 367 ALKTFRDWAVERMGPDGALLNPASSKQIQTLLF---GGAMNQKTGEYLETEREFDVDLPP 423

Query: 272 QAIQV------FNNRMRASRS---AVLKLNTLVEAMNSDGRLRGTLQF------------ 310
           + +           R    RS      K  T      +   LR                 
Sbjct: 424 ELLPDGDDGASDRTRKLLVRSVGLTPTKYTTSGAPSCTADVLRELAGRPTDDPPVYGAAH 483

Query: 311 -------------LGASRTGRWSG--CVFPPQNLPRP------SRSHEELDQIITHLPTS 349
                        +             +      P        SR H  L+ + T     
Sbjct: 484 AGFGGGPAGEEACVALDALCNMGSIDTMLNTFINPLRLLADDESRVHCSLN-LNTETGRL 542

Query: 350 ITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +  P+     +       +R    A EG  LVVAD   +E R+LA +A  +  L AF  
Sbjct: 543 SSRRPNLQNQPALEKDQYFIRKAFRAKEGCALVVADYGQLELRLLAHVARCESMLVAFRE 602

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G   +  T    F+     V             A+  + G+              +    
Sbjct: 603 GGCFHSRTAVGMFDHVREAVESG----------AVLLEKGSSP----------EDSDKPL 642

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           +    ++        NF     +     A +        + + +AW      V       
Sbjct: 643 VKDVYASERRRAKTLNFSIAYGKTAHGLAKDWGVKQEEAQDMLRAWYDDRPEVEAW---- 698

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                      + I   KR       M +   NL  +L   R+L        R+ +NT  
Sbjct: 699 ---------QKRTIADAKRTGYTTTLMGRR-RNLPDILEKNRAL---QGRGARAAINTP- 744

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638
                            +Q  + D++   M+   ++      GY ++L +HDE++ E P+
Sbjct: 745 -----------------IQGSAADVVMMAMLKIAESKTLKDLGYTLLLQIHDEVILEGPE 787

Query: 639 T-DEFNASMLYHLMTSN 654
              E   + +  LM + 
Sbjct: 788 QHKEAALAEVTKLMEAP 804


>gi|255024133|ref|ZP_05296119.1| DNA polymerase I [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 93/310 (30%), Gaps = 89/310 (28%)

Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R   + S  G K+  AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +
Sbjct: 1   RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDE 60

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +   + Y        +     G+        +                +
Sbjct: 61  VDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFVSYP------AVK 111

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              ++    A E  ++ T   R     R+    +                          
Sbjct: 112 EYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------------------ 142

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                                 R+   R     R+ +NT                   +Q
Sbjct: 143 ----------------------RNFNVRGF-AERTAMNTP------------------IQ 161

Query: 604 AVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656
             + DI+ + M+         K    ++L VHDE++ E P+ +      +   +M +   
Sbjct: 162 GSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE 221

Query: 657 WAKGLPLKAE 666
               +PLK +
Sbjct: 222 --LSVPLKVD 229


>gi|118090791|ref|XP_420834.2| PREDICTED: similar to DNA polymerase N [Gallus gallus]
          Length = 530

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 88/520 (16%), Positives = 178/520 (34%), Gaps = 52/520 (10%)

Query: 61  LENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           +    V ++  N+  F +TVL   +   I   +   ++VL            +   L  S
Sbjct: 37  ILRCKVPVICFNAKDFLKTVL-QVYGSGISWKQVADSIVLD---------PRIAAWLINS 86

Query: 120 SQKMEEGKELIARFCKGETHECLYD-----RNKPNHREAWRLFGEYC-KGDVTVTREIFK 173
           S  +   + L+  F K  + E +       RN  +      L   Y     +    ++  
Sbjct: 87  SDTVPSFECLLQYFEKSYSVETVNTDTGGLRNSRHQNLVVNLQKLYTIMMGLAHDLQVQG 146

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
             +   + E  L  +   +      VD       ++I+ +   +L++E   +  G     
Sbjct: 147 LWKLFCTLELPLIKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEAHQIA-GERFLL 205

Query: 234 RCLEKLKTWLFLETGLHL--EDLTET-------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +L+  LF +  LH   E +  T       T + VLS  + L P    +   R    
Sbjct: 206 TSSSQLREVLFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDLHPLPKLMLEYRQV-- 263

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R         +      G +  T    G + TGR S      Q + +      +   I  
Sbjct: 264 RKMKSTYVDGLRTCMRKGFICPTWNQTG-TVTGRLSSKHPNIQGISKHPVRITKKQYIKG 322

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                +T  P          R+  ++ +G   + AD + IE R+LA ++ E   LK F+ 
Sbjct: 323 KEEEILTISP----------RALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLFQE 372

Query: 405 GE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            E  D++ +  ++   +   QV +  R   K +  ++ Y  G    +++A   G+  +  
Sbjct: 373 PETTDIFTSLASQWKGIPSEQVKQTDREQAKRIVYSVVYGAGK---ERLAECLGITPHEA 429

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
            H +++       +  +    + ++   +      ++ +   R K+     +S+  +L  
Sbjct: 430 GHFIES-----FMQKYKKVHEFTKKTIGQCQ-NKGYVVSIMGR-KRLLANINSQDYKLRT 482

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
           +  +     +  G A    K   V +         L   L
Sbjct: 483 QAERQAVNFVVQGSAADLCKMAMVEIFTSVVVSPTLTARL 522


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 108/726 (14%), Positives = 206/726 (28%), Gaps = 175/726 (24%)

Query: 6   IDFETRSPID------LTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDP------ 51
           ID ET           + K  +  Y  ++   ++                 H        
Sbjct: 211 IDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMKGN 270

Query: 52  ---VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               + + L++ LE  D+  +AHN  F+   L+A  ++ + I  W    +L         
Sbjct: 271 QIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW--DTMLIHIIDYRGE 328

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             +  + L      M  G +      K +  +       P     W +   Y   D  VT
Sbjct: 329 RYSWSKRLAWLETDMG-GYDDALDGEKPKGEDEGNYDLIP-----WDILKVYLADDCDVT 382

Query: 169 REIFKRLEPLSSKEQE---LW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + ++  PL  + +E   LW        Y    I   G  VD      L    + E ++
Sbjct: 383 FRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEISR 442

Query: 218 LDQELES-------------------LTYGLVSSSR------------------------ 234
           L+ ++                     +   + S++R                        
Sbjct: 443 LEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDKIN 502

Query: 235 --CLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               ++L   LF   GL      +    +T    L      +     +   R        
Sbjct: 503 FGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFRNGNH-LYN 561

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             ++ L   ++ D  +  +    G + TGR S      Q  PR   +             
Sbjct: 562 NFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLFQYNFEIKKM 620

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
             +                    +G  +V  D + +E R+L       + +  + +G DL
Sbjct: 621 FNSRF-----------------GDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADL 663

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    + +F VA  +V+KDQR   K ++  + YQ  A+   +     G+ ++     +  
Sbjct: 664 HKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFI 723

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               + +     + R  +++                                        
Sbjct: 724 KKYFKRFPKVSKWIRDTKKH---------------------------------------- 743

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQL 587
            + I   K +    R                  LP   S+         R  +NT  +  
Sbjct: 744 VKDISTVKTLTGATRN-----------------LPDIDSIDQSKANEAERQAVNTPIQGT 786

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-M 646
             + T            +   IL    +  +     I +TVHD IV + P  +    +  
Sbjct: 787 GSDCT------------LMSLILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKK 834

Query: 647 LYHLMT 652
           + H+M 
Sbjct: 835 VKHIME 840


>gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 242

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 102/310 (32%), Gaps = 89/310 (28%)

Query: 364 VRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F+V   
Sbjct: 1   IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K M   L Y   A      A    ++                        
Sbjct: 61  EVTPELRRRVKAMSYGLAYGLSAYGV---AQQLKISTEEA-------------------- 97

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                   K    Q   R   + + L    +Q  ++G       
Sbjct: 98  ------------------------KVQMEQYFDRFGGVRDYLRDVVDQARKDGYTSTVLG 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR                 LP   S                + +  RE      L   I 
Sbjct: 134 RRRY---------------LPELDS----------------SNRQVREAAERAALNAPI- 161

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+N  +A         I+L VHDE++ E  + +      L    M +  
Sbjct: 162 QGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGERGELEQLVREHMGN-- 219

Query: 656 SWAKGLPLKA 665
           ++   +PL+ 
Sbjct: 220 AYPLDVPLEV 229


>gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis]
          Length = 2671

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 83/534 (15%), Positives = 159/534 (29%), Gaps = 122/534 (22%)

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E    Y    +   G         T   I++ +  +++     L  G   S    + L  
Sbjct: 2163 EMPTQYCLALLELNGMGFSTEECETQKHIMEAKLNEIEAVAYQLA-GRSFSLTSHDDLAQ 2221

Query: 242  WLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQAI 274
             LFLE  L      +                           +T + VL   K L P   
Sbjct: 2222 VLFLELKLPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFSTAKDVLEKLKALHPLPG 2281

Query: 275  QVFNN-RMRASRSAVLKLNTLVEAMNSD---GRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
             +    R+  + + V+      + +N +    R+    Q   A  TGR S      QN+P
Sbjct: 2282 LILEWKRITNALTKVVFPLQREKLLNPNLGMERIYPISQTHTA--TGRVSFTEPNIQNVP 2339

Query: 331  RPSRSHEELDQIITHLPTSITSDPD---------------------PLQIISDC------ 363
            +      E+ +++   P S    P                        QI ++       
Sbjct: 2340 KDFEI--EMPRLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIPAERGVSFFV 2397

Query: 364  -VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +R   +   G  ++ A  + +E R+LA ++ ++  ++   +G D++ +  A    + P 
Sbjct: 2398 SMRHAFVPFPGGLILAAAYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIAAEWKMIDPE 2457

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             VT   R   K +   + Y  GA   + +    G+  +  A  + T  +   +   + F 
Sbjct: 2458 AVTDTVRQQAKQICYGIIYGMGA---KSLGEQMGIEESDAACYIDTFKSR--YTGIQKFL 2512

Query: 483  RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
            +    +          +G    R   A +  +       +   QA   T++   A I   
Sbjct: 2513 KETVRSCTRDGFVQTILGR--RRYLPAIKDSNPYAKS--HAERQAVNTTVQGSAADIV-- 2566

Query: 543  RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                              ++      ++L   +    K  E+ V
Sbjct: 2567 ----------------------------------KTATVNIQKRLEETFPSVPKSHEHPV 2592

Query: 603  QA--VSRDILAEGMMNATK-----AGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            QA    R                  G   +L +HDE++ E    D    + +  
Sbjct: 2593 QAGGTGR------AERLRHRPPPTRGAFFILQLHDELLYEAAQEDAIQVAQIIK 2640


>gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 138

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 5/141 (3%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F + 
Sbjct: 2   GRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 61

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT +QR   K +   L Y   A     ++    +        +      E +     
Sbjct: 62  LDSVTGEQRRSAKAINFGLIYGMSAF---GLSRQLNIPRKEAQKYMD--LYFERYPGVLE 116

Query: 481 FCRWMQENHPEHAIEDLFIGT 501
           +    +    E    +   G 
Sbjct: 117 YMERTRAQAKEQGYVETLEGR 137


>gi|330801495|ref|XP_003288762.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
 gi|325081196|gb|EGC34721.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
          Length = 489

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 87/553 (15%), Positives = 170/553 (30%), Gaps = 127/553 (22%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            Y    + + RE  K      + E ++  +   +   G   +  ++ +   ++  +   L
Sbjct: 2   RYYIQSLHIQREDNKFFNIFLNIEMKILPIFAMMEYVGIGFNEKVSESGKHLIQRKIEYL 61

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-------------VLSS 265
           D +   L  G   S    + +   LF +  +   ++ ++T ++             VL  
Sbjct: 62  DYKAHVLLPGKTFSLSSGDNVSEILFTDLKIPPPEIAKSTSRKNRLKKQYYLTNSVVLEQ 121

Query: 266 NKKLTPQAIQVFNNRMRASR-----SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
                P    +   R+           + K     +    D R+  T+Q      TGR +
Sbjct: 122 INHYHPLPSIISEYRVLTHHISHYIDVLGKYLFRSDHYQMD-RIYSTIQQTIVP-TGRIA 179

Query: 321 GCVFPPQNL---------PRPSRSHEELDQIITHLPTS-ITSDPDPL---------QIIS 361
                 QN+         P    S E +      L      SD   L          +I+
Sbjct: 180 MENPNLQNISHPIDFKRAPEIDFSQESIKSFNESLDRFEYLSDEHYLSLLQMDKSCDVIT 239

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA--FETGEDLYVTTYARSFNV 419
             +R+  I + G KL+  D   +E R+L  ++ +   ++        D++     +  N+
Sbjct: 240 VSIRNAFIPANGCKLLSVDYGQLELRILTHLSQDPKLMEMFNCNINIDIFKYVAHQVGNI 299

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
               VT   R   K +   + Y  G K+    AS   + +                   E
Sbjct: 300 PYDSVTDSDRQQAKHLVYGILYGMGIKSI---ASELHIPIEQARG------------KLE 344

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAI 538
           NF +                                   +L   L    E  I+NG  A 
Sbjct: 345 NFKKTYN--------------------------------KLIEYLEMVEENVIQNGYIAT 372

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
           +  + R+   ++  K  NN                        +  ++  R         
Sbjct: 373 LFGRVRNFSNIHSCKIDNN----------------------EISKVKRAAR--------- 401

Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-M 651
            +I Q  + DI    M+              ++L +HDEI+ E P+ + + ++ +    M
Sbjct: 402 NSIPQGTAADIAKMAMIKIQDELDKNHFKAQMILQLHDEILFEVPENELYQSAQIIKYSM 461

Query: 652 TSNPSWAKGLPLK 664
            +    +  LP+K
Sbjct: 462 ENVVKLSVSLPIK 474


>gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum]
          Length = 1076

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 86/510 (16%), Positives = 149/510 (29%), Gaps = 141/510 (27%)

Query: 170  EIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +++ L PL+++         E E   L   +   G   D    H L Q    E + L+ 
Sbjct: 651  RLYEWLLPLATRLSSEKSVSLELESTELLARLEATGIAFDRQAGHDLLQRTKSEMSSLEA 710

Query: 221  ELESLTYGLVSSSRCLEKLKTWLFLETGLHL---------EDLTETTCQRVLSSNKKLTP 271
            E   L   +  +     ++   LF+  G+                +T + VL        
Sbjct: 711  EGRRLAS-MPFNFDSPSEIANVLFVRMGIQPVSGCGGSGAPRRHYSTNKEVLQRLAPKHR 769

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             A  +   R   +  +   L  L+ A  S+GR+  +      + TGR        QN+ +
Sbjct: 770  IAAIILKWRKLNTALSSS-LQNLLRACRSNGRIHASF--TTFTGTGRVQSVHPNVQNVQK 826

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
             +                           S  VRS  +A  G  LV AD + +E RVLA 
Sbjct: 827  DALID------------------------SLSVRSLFVAPPGFVLVSADYSQLELRVLAG 862

Query: 392  MAGEQWKLKAFETGEDLYVTT-----YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
            ++ ++   K F  G D + T         S +V         R   K +  A+ Y  GA 
Sbjct: 863  LSKDEGLCKLFRNGGDFFQTVTDRWNANTSIDVPLD------RQKVKQLCYAIIYGMGAI 916

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                     G       HL+++      +++      WM                  +  
Sbjct: 917  TL---GERIGTTKQNAQHLIES-----FFKEFPKVRSWM------------------DAT 950

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             ++ R+    V+                    I  +RR +         +          
Sbjct: 951  LESCRRDACAVT--------------------ILGRRRPLKCGESVVQSD---------- 980

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----Y 622
                      R  +N+         T  G  +E              ++   K       
Sbjct: 981  -----RARAERQAINS---------TIQGSASEI---------FKSALLKLEKNLKDLDA 1017

Query: 623  DIVLTVHDEIVCETPDTDEFN-ASMLYHLM 651
             IV+ VHDE++ E  +         +   M
Sbjct: 1018 RIVMQVHDEVIVELNEACFSTAVERIESAM 1047


>gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii]
          Length = 1585

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/394 (18%), Positives = 141/394 (35%), Gaps = 37/394 (9%)

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E  L  +   +      V+       + ++     +L+QE   +  G         +L+ 
Sbjct: 1113 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVA-GEPFLITSNNQLRE 1171

Query: 242  WLFLETGLHLED-----------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             LF +  LHL                +T + VL++ +   P    +   R      +   
Sbjct: 1172 ILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDFHPLPKIILEYRQVHKIKST-- 1229

Query: 291  LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                + A    G +  T    G + TGR S      Q + +          I    P + 
Sbjct: 1230 FVDGLLACTKKGSISSTWNQTG-TVTGRLSAKHPNIQGISK--------HPIQITTPKNF 1280

Query: 351  TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DL 408
                D    IS   R+  ++S+G   + AD + IE R+LA ++G+   LK F+  E  D+
Sbjct: 1281 KGKEDKTLTISP--RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQEAERDDV 1338

Query: 409  YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            + T  ++  +V   QVT   R   K +  A+ Y  G    +++A+  G+ +   A  +++
Sbjct: 1339 FSTLTSQWKDVPMEQVTHADREQTKKVVYAVVYGAGK---ERLAACLGVPVQEAAQFLES 1395

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                ++++  ++F R       +       +G      ++   + H+   +L  +  +  
Sbjct: 1396 FL--QKYKKIKDFARAAIAQCHQTGYVVSIMGR-----RRPLPRIHAHDQQLRAQAERQA 1448

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
               +  G A    K   + +         L   L
Sbjct: 1449 VNFVVQGSAADLCKLAMIHVFTAVAASRTLTARL 1482


>gi|312074456|ref|XP_003139979.1| hypothetical protein LOAG_04394 [Loa loa]
 gi|307764861|gb|EFO24095.1| hypothetical protein LOAG_04394 [Loa loa]
          Length = 1001

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 91/567 (16%), Positives = 177/567 (31%), Gaps = 121/567 (21%)

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  +              ++L+++    E    L +        A   F      D  ++
Sbjct: 526 LSYLAHYRASDGNSAISFQDLVSQLTSPERAIILRNATSRLQA-AISAFICLHMHDDLLS 584

Query: 169 REIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             I  RL  + S E EL    L   I   G   D   A  L+  +  + T ++ +   ++
Sbjct: 585 AAI--RLSSMKSVELELQSVVLFSEIETMGIAFDTNKAEILHSKLKQKLTDIEAKAYDIS 642

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
            G+  +     ++   LF+   +   +L+     +T + VL       P    +   R R
Sbjct: 643 -GIPFNFGSAAEISQILFVRLQIPPPNLSTGRHYSTNKFVLQQLAPNYPIINLILEWR-R 700

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            S +    L +L+++  SDGR+R    F+  S TGR        QN+ +           
Sbjct: 701 ISTALTTSLPSLLKSCCSDGRIRT--NFITYSCTGRVLTENPNVQNVQKDGIID------ 752

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +RS  IA +G+ L+ +D   +E R+LA ++ +   +  F
Sbjct: 753 ------------------GFSIRSLFIAPKGRILLSSDYRQLEMRMLAHLSADSQLISLF 794

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
               D +       +N       K  R   K +   + Y  G+     ++   G+     
Sbjct: 795 LAEGDFFEII-TNKWNTNETLPVKVDRNKVKQLCYGIIYGMGS---LSLSKELGI----- 845

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                      + + A+       +  P+                             W 
Sbjct: 846 -----------QKQHAQQMIISFFQQFPK--------------------------VRTWM 868

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           +   A  +       ++ R+R                  LP   S+           L T
Sbjct: 869 DKILAVCRADGFVSTLLGRRR-----------------FLPQINSM-----------LQT 900

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPD 638
            + Q  R+           +Q    ++    ++N  K        IV+ +HDE++ ET +
Sbjct: 901 ESAQAERQ------AINTCIQGSVAELFKMALLNLQKNLLGTNSSIVMQMHDEVLVETDE 954

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +   +   +     ++      +PL  
Sbjct: 955 SSVASVVEIIKHSMTSVMPNLRVPLAV 981


>gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
 gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
          Length = 1492

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 91/644 (14%), Positives = 187/644 (29%), Gaps = 142/644 (22%)

Query: 31   ILFAFG-FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
            I   +G FD + V L DC     +   +   +EN+    +A+N   +  +L     ++I 
Sbjct: 935  IAICWGGFDSYFVNLGDC---NTLQDDVANNIENSSAIKIAYNLKEQYKILTRHLQVEI- 990

Query: 90   IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                     +        A +       + S  + +   L+       T       +  +
Sbjct: 991  -KGTSYDPKIGIWLLDQDAHEK--TFHAIISNYLADEAALLDCVIGTCTDGNGIGLHYNS 1047

Query: 150  HREAWRLFGEYCKGDVTVTREIFKRLEPLSS---KEQELWYLDQTIND------------ 194
                 R     C   V V      +L  +     KE+EL+ L   I              
Sbjct: 1048 QTSGRRRA---CIESVLV-----HKLHSVVEAMLKERELYKLYSEIEMPTIRTLCWLELD 1099

Query: 195  -RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
              G+C+D        + +      +++    +  G          +   L+ E       
Sbjct: 1100 GIGFCMDE--CQQQIERLQYRLHYIEEMAYRIA-GRSFQLTSPTDIAHVLYTEL------ 1150

Query: 254  LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
                TC+ VL    ++ P    V   R   S                   L+   ++   
Sbjct: 1151 ---NTCKDVLQKLSQIHPLPALVLEWRRINSALTKTLYP-----------LKRYSKYCHK 1196

Query: 314  SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-------CVRS 366
            S+T R                      Q+ T       SDP+   I  D        +R+
Sbjct: 1197 SKTYRVYPTC-----------------QMHTATGRISISDPNLQNIPKDFDIAKMVRMRN 1239

Query: 367  CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +  +    L+ AD + +E R++A ++ ++   +    G D++    +    +    V+ 
Sbjct: 1240 IIGCTNDTILLSADYSQLELRLIAHLSEDKQLSRVLNDGGDVFKAIASEWLCIPTDHVSD 1299

Query: 427  DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            +QR   K M   + Y     A         +     A  + T  +   +     F     
Sbjct: 1300 EQRQRAKQMCYGIIYGMTPMAL---GEQMKVPEEQAATFMHTFKSR--YNGIAKFIEKTL 1354

Query: 487  ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
             +          +    +R+    R  ++R+    +   QA   T++   A + +    +
Sbjct: 1355 VSCRREGYVSTIMNR--KRLLPNIRSTNARLRS--HAERQAINTTVQGSAADLVK----I 1406

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
             ++ + K  + +     + R+             N    +         K          
Sbjct: 1407 AMINIHKRIDEMC----ANRA-------------NRDNAEWK------PKF--------- 1434

Query: 607  RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                              VL +HDE++ E    +  + S++   
Sbjct: 1435 ------------------VLQMHDELLFEIKANELESVSLIVKQ 1460


>gi|281204189|gb|EFA78385.1| DNA-directed DNA polymerase I [Polysphondylium pallidum PN500]
          Length = 1359

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 93/634 (14%), Positives = 189/634 (29%), Gaps = 124/634 (19%)

Query: 59   EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
              LE+ ++  V+ N+  E        N  +   R I   + A  +    A +  G  L  
Sbjct: 772  RLLEDDNIKKVSFNAK-ESIKPMLWLNQWMQPSRLIDPKIAAWVH-NTEAEEMKGFELTF 829

Query: 119  SSQKMEEGKELIARFCKGETHE-CLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFK 173
                + E K+   +       E    D NK     N+   + +F    +    V   + +
Sbjct: 830  LYHHLVENKDYEKQINLPMIKELQSLDSNKDLVIINNDNNFSMFPNDLRNSSLVMIALEQ 889

Query: 174  RLEPLSS-----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-ESLTY 227
             L  L+      +E  +  +   +   G         T +  +      L  +       
Sbjct: 890  LLLQLNLQAPFYQEMRVVPILSKMELHGITFSPETFRTCSSNLQTYVQNLQGKWNTEFKK 949

Query: 228  GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
                S     ++K +L  +  + + +  + T   ++     +      +   R   ++  
Sbjct: 950  DSAKSLSSPVQIKEFLLTQYKITVSNTGKQTLVDLIKKYPDVQ-YIKDILEYRH-CNKIL 1007

Query: 288  VLKLNTLVEAMNSDG--RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               +   ++ +  +    +       G + TGR S      QNLPR + +    D+    
Sbjct: 1008 TTYVQPYLDIVKDEQAPSIHCQWIHTG-TATGRLSCKQPNLQNLPRNALNVNYNDEDGDS 1066

Query: 346  LPTSITSDPD-------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                   D D         Q IS  VR    A EG  L+  D + IE R++   + +Q  
Sbjct: 1067 ELADFNIDEDEDDNMGANNQTISLNVRDGFEAREGYTLIGLDYSQIELRIMTHYSKDQKL 1126

Query: 399  LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             + F+   D++             +VT  +R   K +   +                G+ 
Sbjct: 1127 EEYFKNEVDVFKHMAHHYLGKPVDKVTPTEREQTKRIIYGIM--------------YGIG 1172

Query: 459  LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
             ++ + ++K +                                  ER  +      ++  
Sbjct: 1173 PHSLSQILKVSK---------------------------------ERASQFINDFLNKFQ 1199

Query: 519  ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             + N + +               +++ + L    K       +LP            N  
Sbjct: 1200 SIRNYIEE---------------EKKKIRLKKFIKTIAGRRRLLP----------HVNSQ 1234

Query: 579  YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---------------KAGYD 623
              N + R L +          +I+Q  + DI+ E M N                      
Sbjct: 1235 DPNQSHRALRQT-------VNSIIQGSASDIIKEAMFNIHVYLSQLSKEYKSLDPHNDPR 1287

Query: 624  IVLTVHDEIVCETPDT-----DEFNASMLYHLMT 652
            ++L +HDE++ E PD      +      +  +M 
Sbjct: 1288 LLLQIHDELIYEIPDAMLNDKESEVCINIKRIME 1321


>gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens]
          Length = 579

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 147/413 (35%), Gaps = 37/413 (8%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            D+    + +   +   + E  L  +   +      V+       + ++     +L+QE 
Sbjct: 42  MDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEA 101

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----------LTETTCQRVLSSNKKLTP 271
             +  G         +L+  LF +  LHL                +T    L++ + L P
Sbjct: 102 HFVA-GERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTVSEALNALRDLHP 160

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +   R      +       + A    G +  T    G + TGR S      Q + +
Sbjct: 161 LPKIILEYRQVHKIKST--FVDGLLACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISK 217

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                     I    P +     D +  IS   R+  ++S+G   + AD + IE R+L  
Sbjct: 218 --------HPIQITTPKNFKGKEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILTH 267

Query: 392 MAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G    +
Sbjct: 268 LSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK---E 324

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           ++A+  G+ +   A  +++    ++++  ++F R       +       +G      ++ 
Sbjct: 325 RLAACLGVPIQEAAQFLESFL--QKYKKIKDFARAAIAQCHQTGCVVSIMGR-----RRP 377

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             + H+   +L  +  +     +  G A    K   + +       + L   L
Sbjct: 378 LPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARL 430


>gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes
           HL025PA1]
          Length = 112

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET SP  L K G+  YAE  D  +++F +  D  PVE+ D      +P  + 
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLAR 101
            AL +  V   AHN+ FER  L A      P           +W CT+V + 
Sbjct: 61  AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMVWSA 112


>gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 97/276 (35%), Gaps = 49/276 (17%)

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
                  +T ++VL+      P   ++ + R   ++        L++    D        
Sbjct: 2   KKGKTGYSTDEKVLNILLDKHPVIAKILDYR-ELAKLYSTYCEPLLKLALKD-------- 52

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-----DCV 364
                                + SR +    Q  T      + DP+   I +        
Sbjct: 53  ---------------------KNSRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDY 91

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 92  KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 147

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
             + R++ K +   L Y  G   ++ ++    +  N     +      E++ +     + 
Sbjct: 148 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEANLAKSYI------EKYFENFTSIKK 198

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             E     A ++ FI T   R K+ +  ++++  ++
Sbjct: 199 YFEKVKNEAKQNGFIVTLSGR-KRYFDFENAKPMQI 233


>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 912

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 122/744 (16%), Positives = 212/744 (28%), Gaps = 203/744 (27%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV--G 113
           + K   E+ D   V HN  F+R V++    + +       T+ +AR       L+     
Sbjct: 202 IFKPYFESPDAKKVWHNYSFDRHVIENHGGIKLAGF-AADTMHMARLWNSNRKLEGGYSL 260

Query: 114 EALKLSSQKMEE--------GKELIAR-------FCKGETHECLY------------DRN 146
           EAL    + M E        G+ELI         F K +  +                +N
Sbjct: 261 EALTSDPKVMSEAGEMFSEAGEELIRSKRGMKKIFGKPKIKKDGTPGKTIELPPIDQIQN 320

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLE-----------PLSSKE---------QELW 186
            P  RE W    EY   D   T  + + LE           P  S +          E +
Sbjct: 321 DPEQRETW---IEYSALDAQATWFLRESLEAKLRGISCDACPRLSDKPTFHECANLWEFY 377

Query: 187 --------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-----SS 233
                    +   +   G  VD        +    ++   +         +       + 
Sbjct: 378 TTYLREFGEVLTDMESAGMFVDKKHLEGAEKQALADKKVAEDYFRRWAMKMCPAAEHMNV 437

Query: 234 RCLEKLKTWLF--------LETGLHLE--------------------DLTETTCQRVL-- 263
               +++  LF         + G+  E                       +   +  L  
Sbjct: 438 GSGIQVRQLLFAGARNKRPDKPGVEKEREFAMVSPEWTAWDEGGREGKAPKKGAKFTLHG 497

Query: 264 -------------SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                        +    ++   ++    R  A+R  V   + L +A  ++  L+ +   
Sbjct: 498 VTKRDLAVPVYTATGLPAVSSVVLRSLAGRPGAAREIVDTWDALTDAEKTNDALKKS--- 554

Query: 311 LGASRTGRWSGCV-------------------------FPPQ--NL-PRPSRSHEELDQI 342
            GA+      G                            P Q  NL  +  R H  L+ I
Sbjct: 555 CGAAYDAFGGGYDGAEACAAVDALNDVAAIDTLLSNFIIPLQSDNLRGKTGRVHTALN-I 613

Query: 343 ITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            T         P      +       +R       G  LVVAD   +E R+LA MAG   
Sbjct: 614 NTETGRLSARRPSLQNQPALEKDRYGIRKAFTCRPGNILVVADYGQLELRLLAHMAGCAS 673

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AFE G D +  T    +      + +     GK        + G++ + +       
Sbjct: 674 MREAFEAGGDFHSRTAMGMYKEIREAMDE-----GK-----CLLEYGSEGYDED------ 717

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             N  A +    ++        NF     +     A +        E     W      V
Sbjct: 718 EANRPALVKDMFASERRKAKVLNFSIAYGKTAHGLAKDFGVSTKEAEDTVNLWYSDRPEV 777

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
              W E+  A    +     ++ R R                  LP              
Sbjct: 778 -RAWQEVQHANATKLGKVSTLLGRHRN-----------------LP-------------- 805

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
               ++  ++ R++     +   I Q  + DI    MM   +       GY++++ +HDE
Sbjct: 806 --EASSRDEMRRQHALRASINTPI-QGGAADIAMLAMMQIHRCPRLKEIGYELLMQIHDE 862

Query: 632 IVCETPDTDEFNASMLYHLMTSNP 655
           ++ E P+  +  A  L      NP
Sbjct: 863 VILEGPEEHKDEALALVKRHMENP 886


>gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
 gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
          Length = 853

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 109/750 (14%), Positives = 208/750 (27%), Gaps = 164/750 (21%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVHDPVMPQVLKEALEN 63
           ET S           +  D+C +  +    +  V     ++   +   +     +EA+ +
Sbjct: 153 ETFSKTPF-----DPHQADICTVSISAKAHESRVVPISHKVGKNIAPELSRDEAREAVLD 207

Query: 64  ---------TDVTIVAHNSYFERTVLKACFNLDI-----PIHRWICTLVLARSNGLPSAL 109
                         +A N  FE           +     P+  W+ ++ +A     P  L
Sbjct: 208 LMDRYVFTHEPTLKIAVNLAFETKFAARYKRYILGRVADPLMMWVRSMQIAA----PGRL 263

Query: 110 KAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE---YCKG 163
            ++ +      L +   +     +  F      + L  +      E      E   Y   
Sbjct: 264 NSLSKPHTGWGLKTATKKTFGVTMQDFS-----QLLQKKGVQFFDEIDASTKEGFIYSAE 318

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV-------------DVALA--HTLN 208
           D     + +   + +  +          I      V             D A A      
Sbjct: 319 DADYGLQHYHYWKTIIEQIPGYDKWLHDIEMPFMRVIGIMEFWGMPWNTDTANARYEEAL 378

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEK--LKTWLFLETGLHLEDLTETTCQRVLSSN 266
           Q  +    ++ + +   T   V+  +  +   +K  LF +  L +  +++ T    L   
Sbjct: 379 QAQENASEEIKRIIFEATGEEVAPGKTGKTGSVKLALFNKMKLPILKISDKTGNASLDEE 438

Query: 267 KKLTPQAIQVFNNRMR---ASRSAVLKLNTLVEAMNSD---------GRLRGTLQFLGAS 314
             +      +  N++      +   + L    E +  D         G +  T Q  GA 
Sbjct: 439 ALI--DMRFMLENKLESIDEEKYLAIPLPEGWEDIEPDANYGEPGFNGDI--TKQERGAI 494

Query: 315 RTGR---------------------WSGCVF-------PPQNLPRPSRSHEELDQIITHL 346
           R  +                         +             P   R H       T  
Sbjct: 495 RIKKREFHPFKDAGIALIEQMMKIQKYTTLISSHIVGRQKYLNPFTDRIHAGYS-SFTDT 553

Query: 347 PTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               +  P+   +         +RS      GK L   D +G E R++AW + ++  ++ 
Sbjct: 554 GRLNSFKPNGQNVPRPDNDDFKIRSFFAPKPGKILFFIDFSGFELRLIAWKSNDEVMIEL 613

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLN 460
           F T  D++  T +       + +TK +R   K     + Y G   A QK   +  G+   
Sbjct: 614 FNTNGDMHRRTASALTGKPESDITKIERTNAKAGNFGIAYGGTEYALQKTFKTDYGVRKT 673

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   N+    +       R    +  E+   +   G      K+  R  +   S+L
Sbjct: 674 LDECAAIVNAVKTAYPRIPQMQRQAILDARENGYAETIYG-----YKRLLRDINGTNSKL 728

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +    T   G A    K                          VY  +G      
Sbjct: 729 RGSDERRAGNTPIQGSAADIMKDCQNK---------------------VYDRIGE----- 762

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
              T +  +  T               D+L       T    D++  +HDE++ E  D  
Sbjct: 763 --DTFKQRQGET---------------DVL------FTHGSIDMIAQIHDEMIFEMDDDP 799

Query: 641 EFNASM---LYHLMTSNPSWAKGLPLKAEG 667
                    +  +M   P     +P+ AE 
Sbjct: 800 ALVEKAGAWIKAVMERPPLPDFPVPVIAEA 829


>gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens]
          Length = 891

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 92/513 (17%), Positives = 178/513 (34%), Gaps = 55/513 (10%)

Query: 71  HNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            N+  F R VL+   N       W      A   GL      +   L   S      ++L
Sbjct: 319 FNAKDFVRIVLQFFGNDG----SWKHV---ADFIGLD---PRIAAWLIDPSDATPSFEDL 368

Query: 130 IARFC------KGETHECLYDRNKPNHREAWRLFGEY-CKGDVTVTREIFKRLEPLSSKE 182
           + ++C      K  +      RN  N      L   Y    D+    + +   +   + E
Sbjct: 369 VEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLE 428

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +      V+       + ++     +L+QE   +  G         +L+  
Sbjct: 429 LPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVA-GERFLITSNNQLREI 487

Query: 243 LFLETGLHLED-----------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           LF +  LHL                +T + VL++ + L P    +   R      +    
Sbjct: 488 LFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKST--F 545

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
              + A    G +  T    G + TGR S      Q + +          I    P +  
Sbjct: 546 VDGLLACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISK--------HPIQITTPKNFK 596

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLY 409
              D +  IS   R+  ++S+G   + AD + IE R+L  ++G+   LK F+  E  D++
Sbjct: 597 GKEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVF 654

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  ++  +V   QVT   R   K +  A+ Y  G    +++A+  G+ +   A  +++ 
Sbjct: 655 STLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK---ERLAACLGVPIQEAAQFLESF 711

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              ++++  ++F R       +       +G      ++   + H+   +L  +  +   
Sbjct: 712 L--QKYKKIKDFARAAIAQCHQTGCVVSIMGR-----RRPLPRIHAHDQQLRAQAERQAV 764

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             +  G A    K   + +       + L   L
Sbjct: 765 NFVVQGSAADLCKLAMIHVFTAVAASHTLTARL 797


>gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens]
 gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu
 gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens]
 gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct]
          Length = 900

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 92/513 (17%), Positives = 178/513 (34%), Gaps = 55/513 (10%)

Query: 71  HNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            N+  F R VL+   N       W      A   GL      +   L   S      ++L
Sbjct: 319 FNAKDFVRIVLQFFGNDG----SWKHV---ADFIGLD---PRIAAWLIDPSDATPSFEDL 368

Query: 130 IARFC------KGETHECLYDRNKPNHREAWRLFGEY-CKGDVTVTREIFKRLEPLSSKE 182
           + ++C      K  +      RN  N      L   Y    D+    + +   +   + E
Sbjct: 369 VEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLE 428

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +      V+       + ++     +L+QE   +  G         +L+  
Sbjct: 429 LPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVA-GERFLITSNNQLREI 487

Query: 243 LFLETGLHLED-----------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           LF +  LHL                +T + VL++ + L P    +   R      +    
Sbjct: 488 LFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKST--F 545

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
              + A    G +  T    G + TGR S      Q + +          I    P +  
Sbjct: 546 VDGLLACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISK--------HPIQITTPKNFK 596

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLY 409
              D +  IS   R+  ++S+G   + AD + IE R+L  ++G+   LK F+  E  D++
Sbjct: 597 GKEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVF 654

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  ++  +V   QVT   R   K +  A+ Y  G    +++A+  G+ +   A  +++ 
Sbjct: 655 STLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK---ERLAACLGVPIQEAAQFLESF 711

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              ++++  ++F R       +       +G      ++   + H+   +L  +  +   
Sbjct: 712 L--QKYKKIKDFARAAIAQCHQTGCVVSIMGR-----RRPLPRIHAHDQQLRAQAERQAV 764

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             +  G A    K   + +       + L   L
Sbjct: 765 NFVVQGSAADLCKLAMIHVFTAVAASHTLTARL 797


>gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens]
          Length = 900

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 92/513 (17%), Positives = 178/513 (34%), Gaps = 55/513 (10%)

Query: 71  HNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            N+  F R VL+   N       W      A   GL      +   L   S      ++L
Sbjct: 319 FNAKDFVRIVLQFFGNDG----SWKHV---ADFIGLD---PRIAAWLIDPSDATPSFEDL 368

Query: 130 IARFC------KGETHECLYDRNKPNHREAWRLFGEY-CKGDVTVTREIFKRLEPLSSKE 182
           + ++C      K  +      RN  N      L   Y    D+    + +   +   + E
Sbjct: 369 VEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLE 428

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +      V+       + ++     +L+QE   +  G         +L+  
Sbjct: 429 LPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVA-GERFLITSNNQLREI 487

Query: 243 LFLETGLHLED-----------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           LF +  LHL                +T + VL++ + L P    +   R      +    
Sbjct: 488 LFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKST--F 545

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
              + A    G +  T    G + TGR S      Q + +          I    P +  
Sbjct: 546 VDGLLACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISK--------HPIQITTPKNFK 596

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLY 409
              D +  IS   R+  ++S+G   + AD + IE R+L  ++G+   LK F+  E  D++
Sbjct: 597 GKEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVF 654

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  ++  +V   QVT   R   K +  A+ Y  G    +++A+  G+ +   A  +++ 
Sbjct: 655 STLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK---ERLAACLGVPIQEAAQFLESF 711

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              ++++  ++F R       +       +G      ++   + H+   +L  +  +   
Sbjct: 712 L--QKYKKIKDFARAAIAQCHQTGCVVSIMGR-----RRPLPRIHAHDQQLRAQAERQAV 764

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             +  G A    K   + +       + L   L
Sbjct: 765 NFVVQGSAADLCKLAMIHVFTAVAASHTLTARL 797


>gi|332818964|ref|XP_001147379.2| PREDICTED: DNA polymerase nu isoform 3 [Pan troglodytes]
          Length = 1502

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 150/413 (36%), Gaps = 37/413 (8%)

Query: 163  GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             D+    + +   +   + E  L  +   +      V+       + ++     +L+QE 
Sbjct: 1011 MDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEA 1070

Query: 223  ESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----------LTETTCQRVLSSNKKLTP 271
              +  G         +L+  LF +  LHL                +T + VL++ + L P
Sbjct: 1071 HFVA-GERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHP 1129

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                +   R      +       + A    G +  T    G + TGR S      Q + +
Sbjct: 1130 LPKIILEYRQVHKIKST--FVDGLLACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISK 1186

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                      I    P +     D +  IS   R+  ++S+G   + AD + IE R+LA 
Sbjct: 1187 --------HPIQITTPKNFKGKEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILAH 1236

Query: 392  MAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G    +
Sbjct: 1237 LSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK---E 1293

Query: 450  KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            ++A+  G+ +   A  +++    ++++  ++F R       +       +G      ++ 
Sbjct: 1294 RLAACLGVPVQEAAQFLESFL--QKYKKIKDFARAAIAQCHQTGCVVSIMGR-----RRP 1346

Query: 510  WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
              + H+   +L  +  +     +  G A    K   + +       + L   L
Sbjct: 1347 LPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARL 1399


>gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes]
          Length = 900

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 150/413 (36%), Gaps = 37/413 (8%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            D+    + +   +   + E  L  +   +      V+       + ++     +L+QE 
Sbjct: 409 MDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEA 468

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----------LTETTCQRVLSSNKKLTP 271
             +  G         +L+  LF +  LHL                +T + VL++ + L P
Sbjct: 469 HFVA-GERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHP 527

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +   R      +       + A    G +  T    G + TGR S      Q + +
Sbjct: 528 LPKIILEYRQVHKIKST--FVDGLLACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISK 584

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                     I    P +     D +  IS   R+  ++S+G   + AD + IE R+LA 
Sbjct: 585 --------HPIQITTPKNFKGKEDKILTISP--RAMFVSSKGHTFLAADFSQIELRILAH 634

Query: 392 MAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           ++G+   LK F+  E  D++ T  ++  +V   QVT   R   K +  A+ Y  G    +
Sbjct: 635 LSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK---E 691

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           ++A+  G+ +   A  +++    ++++  ++F R       +       +G      ++ 
Sbjct: 692 RLAACLGVPVQEAAQFLESFL--QKYKKIKDFARAAIAQCHQTGCVVSIMGR-----RRP 744

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             + H+   +L  +  +     +  G A    K   + +       + L   L
Sbjct: 745 LPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARL 797


>gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta]
          Length = 1484

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 89/517 (17%), Positives = 179/517 (34%), Gaps = 63/517 (12%)

Query: 71   HNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
             N+  F R VL+   N       W      A   GL      +   L   S  +   ++L
Sbjct: 921  FNAKDFVRIVLQFFGNDG----SWKHV---ADFVGLD---PRIAAWLIDPSDAVPSFEDL 970

Query: 130  IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-----TREIFKRLEPLS----- 179
            + ++C     + +  +    +  + R        D        T ++  +L+        
Sbjct: 971  VEKYC----EKSITVKVNSTYENSSRNIVNQNVRDNLKILYRLTMDLCSKLKEYGLWQLF 1026

Query: 180  -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
             + E  L  +   +      V+      ++ ++     KL+QE   +  G         +
Sbjct: 1027 CTLEVPLIPILAVMESHAIQVNKEEMEKISALLGARLKKLEQEAHFVA-GERFLIMSSNQ 1085

Query: 239  LKTWLFLETGLHLED-----------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            L+  LF +  LHL                +T + VL++ + L P    +   R      +
Sbjct: 1086 LREILFGKLKLHLLSRRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKS 1145

Query: 288  VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                   + A    G +  T    G + TGR S      Q + +      +        P
Sbjct: 1146 T--FVDGLLACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITK--------P 1194

Query: 348  TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE- 406
             +     D +  IS   R+  ++S+G   + AD + IE R+LA ++G+   LK F+  E 
Sbjct: 1195 KNFKGKEDEILTISP--RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESER 1252

Query: 407  -DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
             D++ T  ++  +V    VT   R   K +  A+ Y  G    +++A+  G+ +   A  
Sbjct: 1253 DDVFSTLTSQWKDVPMEHVTHADREQTKRVVYAVVYGAGK---ERLAACLGVPVQEAAQF 1309

Query: 466  VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
            +++    ++++  ++F R               +G      ++   + H+   +L  +  
Sbjct: 1310 LESFL--QKYKKIKDFARAAIAQCHRTGYVVSIMGR-----RRPLPRIHAHDQQLRAQAE 1362

Query: 526  QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +     +  G A    K   + +         L   L
Sbjct: 1363 RQAVNFVVQGSAADLCKLAMIRVFTAVATSRTLTARL 1399


>gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni]
 gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 98/276 (35%), Gaps = 49/276 (17%)

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
                  +T ++VL++     P   ++ + R   ++        L++    D        
Sbjct: 2   KKGKTGYSTDEKVLNALLDKHPVIAKILDYR-ELAKLYSTYCEPLLKLALKD-------- 52

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-----DCV 364
                                + SR +    Q  T      + DP+   I +        
Sbjct: 53  ---------------------KNSRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDY 91

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           +SC +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     + 
Sbjct: 92  KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 147

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
             + R++ K +   L Y  G   ++ ++    +  +     +      E++ +     + 
Sbjct: 148 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYI------EKYFENFTSIKK 198

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             E     A ++ FI T   R K+ +  ++++  ++
Sbjct: 199 YFETVKNKAKQNGFITTLSGR-KRYFDFENAKPMQI 233


>gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes
           HL030PA1]
          Length = 112

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET SP  L K G+  YAE  D  +++F +  D  PVE+ D      +P  + 
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLAR 101
            AL +  V   AHN+ FER  L A      P           +W CT+V + 
Sbjct: 61  AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQWRCTMVWSA 112


>gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 100

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 44/93 (47%), Positives = 55/93 (59%)

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
             R + R  +YGGKL ENIVQAV+RD+    M    + G+ IV+ VHDEIV + P    F
Sbjct: 7   IDRLVVRLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGF 66

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +    LM + P WA GLPL A+GYE   YRK
Sbjct: 67  TVADACVLMATLPDWAAGLPLDADGYECDYYRK 99


>gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 671

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 78/515 (15%), Positives = 148/515 (28%), Gaps = 118/515 (22%)

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             DV     +                + Q     G   D   A    +  +    +L++E
Sbjct: 237 ARDVEAKVAVA-------------LGVLQH---HGVGFDRTRADEQRRAANRRVEELERE 280

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---------TTCQRVLSSNKKLTPQ 272
            +    G+  +    +++   L+ +  L                +T   VL S  K    
Sbjct: 281 AQK-CIGVDINLASAQQVADVLYNKLKLPTPSAHAMKGSKSSHLSTSVEVLQSLVKHHHF 339

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A  V N+R      A+         + +DGR                             
Sbjct: 340 AQIVLNHRGALKERAMCDNYDKSAVIAADGR----------------------------- 370

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +R H + +   T      +S P+  Q+    +R+C +A  G+  + AD + IE RVLA +
Sbjct: 371 ARIHTQWNNTKTATGRLSSSHPNIQQVGRGTMRNCFVAPTGRTFIAADYSQIELRVLAHL 430

Query: 393 AGEQWKLKAFETG-EDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQK 450
           +G+   +        D++V  +     +       K  R I K     + Y   A     
Sbjct: 431 SGDDRLISLLRQAKGDVFVAIWNAGKGLPLDAPAEKSTRDIAKRTAYGIVYGQHA---TG 487

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A   G+  +     +        +  A            + A +   +        +A 
Sbjct: 488 LAEKLGVPKSEAQGYIAA------FHRAFPKVNQWITRVLQRAEQTGAVTLPMSGRHRAL 541

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            + HS+V    +E  +    TI  G A                                 
Sbjct: 542 PKIHSKVFSERSEAQRQAVNTIIQGTAA-------------------------------- 569

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                    + T   + T      G+   ++              +  K    +V  +HD
Sbjct: 570 -------DMMKTAMLRWTSAVG-AGRFANDVAPG-----------SVNKKRVTLVAQIHD 610

Query: 631 EIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLK 664
           E++ E  +      A  + ++M +    A   P+K
Sbjct: 611 ELLFEVDEDYVPECARAVKNVMENAIKLAVPTPIK 645


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 111/736 (15%), Positives = 224/736 (30%), Gaps = 169/736 (22%)

Query: 8   FETR----SP--IDLTKCGICKYAE--------DVCVILFAFGFDDHPVE---LWDCVHD 50
            ET     S   +D+   G+  Y +        +  +  F   F+   ++   +   + +
Sbjct: 75  METYLTGVSEYVLDVETTGLDVYNDILVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMTE 134

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSA 108
                V+   L N  +  + HN  F+  V+   +   I  + W  T +            
Sbjct: 135 EECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRI-ANVWWDTNIAGWVLNENEKHR 193

Query: 109 LKAVGEALKLSSQ-KMEEGKELIARF-CKGETHECLYDRNKPNHREAWRLF---GEYCKG 163
           LK +     L+ +   E+  +L     C     +        +  + W L+    +Y + 
Sbjct: 194 LKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTWALYQFQKKYLRE 253

Query: 164 DVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK----L 218
           D    R  +++L  +    E  L  +   +  RG  +    A  L+   + E  +     
Sbjct: 254 D--HPRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKLC 311

Query: 219 DQELESLTYGLVSSS--------------RCLEKLKTWLFLETGLHLEDLTE--TTCQRV 262
           D+ +      +  +                  +++    +    L      E   T  ++
Sbjct: 312 DEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDKI 371

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           +  ++    +A                +           G+L GT               
Sbjct: 372 VQQHRNKAKKAGTKKGEEFIQFLDNYQRYK-------ECGKLLGT------------YID 412

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSD----PDPLQIIS--DCVRSCVIASEGKKL 376
             P     + +  H   +Q         +SD     +   I S    +R    A +G K 
Sbjct: 413 KIPEVKCAKTNAVHTTYNQYGAKTGRFSSSDTVTKINLQNIPSHEKSIRKIFRARDGYKF 472

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ------------V 424
           V  D + IE RVL++++G++   +A+  G+DLY    ++ + V                 
Sbjct: 473 VGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDCREFYPDGTVNAE 532

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
            K +R   K + L + Y+ GAKA                            E  +    W
Sbjct: 533 GKHRRTTMKSVLLGIMYERGAKAIG--------------------------EQFDKSAEW 566

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +++   + +   ++ +L  ++ +  E+       I  RKRR
Sbjct: 567 ------------------AQKLIDDFYKSFPKIQQLRLKVEKMAEE-YGYVTTIQGRKRR 607

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + LP      Y                   +  +   L   ++Q 
Sbjct: 608 LPE------------MQLPDHDDYRY-------------------QEAHRQSL-NAVIQG 635

Query: 605 VSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSW 657
            S DI+   M+              +V+TVHDE++ E P+   +  A +L + M      
Sbjct: 636 SSADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVNTMKRVGHS 695

Query: 658 AKGLPLKAEGYESKRY 673
              LP+  +   +  +
Sbjct: 696 LIDLPMSVDAEVNDYW 711


>gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii]
 gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii]
          Length = 2508

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 87/593 (14%), Positives = 155/593 (26%), Gaps = 167/593 (28%)

Query: 160  YCKGDVTVTREIF----------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
                   + R I+            L PL   E  L  +   +   G  +   +      
Sbjct: 1968 DACRRAAMVRRIYIDKLPRLQSEGLLRPLLELEMPLVRILARMEGEGIALAPQVLKDQRG 2027

Query: 210  IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLS 264
             ++    +L  +   L  G+       + +   LF    L        +  +        
Sbjct: 2028 PLEARLRQLAAKAH-LAAGMTFDLNSPKDVSEVLFQHLNLPPPPCAFSNQNQRHPSTKKE 2086

Query: 265  SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE---------------------------- 296
              ++L           +   R+    L   VE                            
Sbjct: 2087 VLEELEESTHHPIIRLLLDYRTLHKLLTGFVETLYHTAKGQWQRQQHELERCQGQGQQPQ 2146

Query: 297  --------AMNSDG--------RLRGTLQFLGASRTGRWSGCVFPPQNLPRP---SRSHE 337
                    A+   G        RL GT     ++ TGR +      Q +PRP   +    
Sbjct: 2147 RGGAATGGAVKPGGPGPVPDVIRLCGTW-LHTSTATGRLAMDEPNLQTVPRPVEYTFMAS 2205

Query: 338  ELDQIITHLPTSITSDPDPLQIISDC------------------VRSCVIASEGKKLVVA 379
            +L Q     P +  +D   L+++                     +RS  +A  G  ++ A
Sbjct: 2206 QLSQASAGTPPAAGADGAELKLLPGEERGGGAGEGGRSVTLHFNLRSAFVAPPGYMVLAA 2265

Query: 380  DLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
            D   IE R++A  + +           +D ++   A    V   QVT + R   K +   
Sbjct: 2266 DYKQIELRLMAHFSSDAALCALLRNPAQDPFILLAAEWKKVPVEQVTPEVRVQAKRLAYG 2325

Query: 439  LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
            + Y  G       A   G+++     L                                 
Sbjct: 2326 MLYGMGTNTL---AQELGVSVAEAGELSD------------------------------- 2351

Query: 499  IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                       +R+    V     E+ +A           +  +RR    +         
Sbjct: 2352 ----------NFRRAIPSVDRWMREVVEAVRSC--GYTTTLMGRRRYYSRI--------- 2390

Query: 559  ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                        R   + RS      RQ              + Q  + D++   M+   
Sbjct: 2391 ----------NERASKDARSARAQAERQ----------AVNTVCQGSAADLIKAAMVTLQ 2430

Query: 619  KAGY--------DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPL 663
            +            +VL VHDE+V E  +     A+ L   +      A  +PL
Sbjct: 2431 RRLEAEGLAPHVRMVLMVHDELVFEVAEQLLPAAARLVQAVLEGEV-ALSVPL 2482


>gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase
 gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5]
          Length = 829

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 86/530 (16%), Positives = 158/530 (29%), Gaps = 81/530 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI----HRWICTLVLARSNG-LPSALKA 111
           L++ L++ + TIV HN  F+    K    L         R   T++              
Sbjct: 179 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 238

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A+K +     +  EL            +   +       + +   Y   D   T  +
Sbjct: 239 KSLAMKYTDMGDYDF-ELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRL 297

Query: 172 FKRLEPLSSKEQEL--WYLD---------QTINDRGYCVDVALAHTLNQIV------DVE 214
                P   K ++L   Y D         Q + DRG  + +         +        E
Sbjct: 298 HNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKARE 357

Query: 215 RTKLDQELESLTY--GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNK 267
           +     E++ L        +   +++L+  LF   GL     LT+T    T    L+   
Sbjct: 358 KLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELA 417

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P A  +   R + ++     +  ++ ++++DG +R        +     S      Q
Sbjct: 418 TQHPIAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQ 476

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LPR                                ++ CV+A  G +++  DL   E  
Sbjct: 477 QLPRDE----------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 508

Query: 388 VLAWMAGEQWKLKAFETGE-------DLYVTTYARSFNV--APAQVTK---DQRAIGKVM 435
             A ++G++   + F           D +       F +   P  V K     R   K +
Sbjct: 509 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 568

Query: 436 ELALGYQGGAK--------AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
              + Y  G          A  + A+ TG                  +       RW+ +
Sbjct: 569 TFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDK 628

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
            H +      FI +   R K+     HS    +  E  ++    I    +
Sbjct: 629 CHDQI-KNHGFIYSHFGR-KRRLHNIHSEDRGVQGEEIRSGFNAIIQSAS 676


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 110/734 (14%), Positives = 229/734 (31%), Gaps = 165/734 (22%)

Query: 8   FETR----SP--IDLTKCGICKYAE--------DVCVILFAFGFDDHPVE---LWDCVHD 50
            ET     S   +D+   G+  Y +        +  +  F   F+   ++   +   + +
Sbjct: 75  METYLTGVSEYVLDVETTGLDVYNDILVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMTE 134

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSA 108
                V+   L N  +  + HN  F+  V+   +   I  + W  T +            
Sbjct: 135 EECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRI-ANVWWDTNIAGWVLNENEKHG 193

Query: 109 LKAVGEALKLSSQ-KMEEGKELIARF-CKGETHECLYDRNKPNHREAWRLF---GEYCKG 163
           LK +     L+ +   E+  +L     C     +        +  + W L+    +Y + 
Sbjct: 194 LKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTWALYQFQKKYLRE 253

Query: 164 DVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK----L 218
           D    R  +++L  +    E  L  +   +  RG  +    A  L+   + E  +     
Sbjct: 254 D--HPRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKLC 311

Query: 219 DQELESLTYGLVSSS--------------RCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           D+ +      +  +                  +++    +      L+ ++    +    
Sbjct: 312 DEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIF--KLKSVSRKEPRGTGD 369

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              +           R +A ++   K    ++ +++  R +     LG            
Sbjct: 370 KIVQQH---------RNKAKKAGTKKGEEFIQFLDNYQRYKECGNLLG------TYIDKI 414

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSD----PDPLQIIS--DCVRSCVIASEGKKLVV 378
           P     + +  H   +Q         +SD     +   I S    +R    A +G K V 
Sbjct: 415 PEVKCAKTNAVHTTYNQYGAKTGRFSSSDTVTKINLQNIPSHEKSIRKIFRARDGYKFVG 474

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ------------VTK 426
            D + IE RVL++++G++   +A+  G+DLY    ++ + V                  K
Sbjct: 475 GDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDCREFYPDGTVNAEGK 534

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            +R   K + L + Y+ GAKA                            E  +    W  
Sbjct: 535 HRRTTMKSVLLGIMYERGAKAIG--------------------------EQFDRSAEW-- 566

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                            +++   + +   ++ +L  ++ +  E+       I  RKRR  
Sbjct: 567 ----------------AQKLIDDFYKSFPKIQQLRLKVEKMAEE-YGYVTTIQGRKRRLP 609

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                        + LP      Y                   +  +   L   ++Q  S
Sbjct: 610 E------------MQLPDHDDYRY-------------------QEAHRQSL-NAVIQGSS 637

Query: 607 RDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAK 659
            DI+   M+              +V+TVHDE++ E P+   +  A +L + M        
Sbjct: 638 ADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVNTMKRVGHSLI 697

Query: 660 GLPLKAEGYESKRY 673
            LP+  +   +  +
Sbjct: 698 DLPMSVDAEVNDYW 711


>gi|221108884|ref|XP_002170257.1| PREDICTED: similar to DNA polymerase theta, partial [Hydra
           magnipapillata]
          Length = 493

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 84/532 (15%), Positives = 162/532 (30%), Gaps = 118/532 (22%)

Query: 161 CKGDVTV-----TREIFKR----LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           C   VTV       E+  +    ++     E         I   G          L +I+
Sbjct: 21  CIEAVTVYHLMEEMELRLKREDLIKSFVDIEMPTIRTLLVIEINGIGFSDIECEKLKEIL 80

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             +   + QE   L+ G V S                           + VL    K   
Sbjct: 81  KGKLDSIQQECYKLS-GSVFSLSSPA-------------------DVAREVLEKLSKFHA 120

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSD----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R   S              +SD     R+     +   + TGR +      Q
Sbjct: 121 LPKLILEWRKINSTLTKFVYPVQRRKRSSDVLQMHRIFTEAIYR--TCTGRVTFSEPNLQ 178

Query: 328 NLPRP-----------------SRSHEELDQIITHLPTSITSDPD------PLQIISDCV 364
           N+P+                  + + +   Q+++     ++   D        ++ +  +
Sbjct: 179 NVPKEFDIKLSSLVVKSPPHQITGNKKHKRQLVSSTRPLLSQQKDKHIGSSTTEMFTVSM 238

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS  +      +V AD   +E R++A M+ +Q  +K      D++ +  A   ++    V
Sbjct: 239 RSTFVPFSSGVMVAADYEQLELRIIAHMSQDQILIKTLNESGDVFKSIAAEINHINVVDV 298

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T  QR   K +   + Y  G KA        G+  N  +  +      E++++     + 
Sbjct: 299 TTVQRQHAKQICYGIIYGIGIKALSH---QLGVEENDASEYM------EKFKNRFKGVKR 349

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
             +N  E A  + F+ T   R K+     +S+++   +   +    T   G A    K  
Sbjct: 350 FIQNTIEEARANGFVKTLGGR-KRYLPAINSKITNDKSHAERQAVNTTIQGSAADLVKI- 407

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                 ++   D+  N+ + N+             KL E     
Sbjct: 408 ----------------------AMNNIDIKLNKIFGNSCFN----------KLAE----- 430

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNP 655
                       +   G  +VL +HDE++ E   +  +    ++   M S  
Sbjct: 431 -----------KSQPKGAYLVLQIHDELLYEVNKENVDIVIKLIRREMESAI 471


>gi|73951787|ref|XP_545922.2| PREDICTED: similar to polymerase (DNA directed) nu [Canis
           familiaris]
          Length = 947

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 147/408 (36%), Gaps = 37/408 (9%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             +++   +   + E  L  +   +      V+       + ++     +L+QE   +  
Sbjct: 414 QLKVYGLWQLFCTLELPLIPILAVMESHSIRVNREEMERTSALLGSRLKELEQEAHFVA- 472

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET-----------TCQRVLSSNKKLTPQAIQV 276
           G         +L+  LF +  LHL    ET           T + VL++ + L P    +
Sbjct: 473 GEQFLITSNNQLQEILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKII 532

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R R  ++    ++ L+  +   G +       G + TGR S      Q + +     
Sbjct: 533 LEYR-RVHKTKSAFVDGLLAFVRK-GSISSMWNQTG-TVTGRLSARHPNIQGISKHPIKI 589

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +         T +T  P          RS  +A E    + AD + IE R+LA ++G+ 
Sbjct: 590 TKPQNFKGTEGTMLTISP----------RSMFVAPESHTFLAADFSQIELRILAHLSGDP 639

Query: 397 WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             LK F      D++ T  ++  ++ P  VT   R   K +  ++ Y  G    +++A+ 
Sbjct: 640 ELLKLFRESGRDDVFSTLTSQWKDIPPECVTYADREQTKKVVYSVVYGAGK---ERLAAC 696

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+ +   A  +++    ++++  ++F +       +       +G      ++   + H
Sbjct: 697 LGVTVQEAAQFLESFL--QKYKKIKDFVQTTIAQCHQTGYVASIMGR-----RRPLPRVH 749

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +  +L  +  +     +  G A    K   + +         L   L
Sbjct: 750 DQDQQLRAQAERQAVNFVVQGSAADLCKMAMIRIFRAVATSPTLTARL 797


>gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35]
 gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35]
          Length = 855

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/530 (16%), Positives = 156/530 (29%), Gaps = 81/530 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI----HRWICTLVLARSNG-LPSALKA 111
           L++ L++ + TIV HN  F+    K    L         R   T++              
Sbjct: 205 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A+K +     +  EL            +   +       + +   Y   D   T  +
Sbjct: 265 KSLAMKYTDMGDYDF-ELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATLRL 323

Query: 172 FKRLEPLSSKEQEL--WYLD---------QTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
                P   K ++L   Y D         Q + DRG  + +         +     K  +
Sbjct: 324 HNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKARE 383

Query: 221 ELE--------SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNK 267
           +L                 +   +++L+  LF   GL     LT+T    T    L+   
Sbjct: 384 KLYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELS 443

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P A  +   R + ++     +  ++ ++++DG +R        +     S      Q
Sbjct: 444 TQHPIAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQ 502

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LPR                                ++ CV+A  G +++  DL   E  
Sbjct: 503 QLPRDE----------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 534

Query: 388 VLAWMAGEQWKLKAFETGE-------DLYVTTYARSFNV--APAQVTK---DQRAIGKVM 435
             A ++G++   + F           D +       F +   P  V K     R   K +
Sbjct: 535 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 594

Query: 436 ELALGYQGGAK--------AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
              + Y  G          A  + A+ TG                  +       RW+ +
Sbjct: 595 TFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDK 654

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
            H +      FI +   R K+     HS    +  E  ++    I    +
Sbjct: 655 CHDQI-KNHGFIYSHFGR-KRRLHNIHSEDRGVQGEEIRSGFNAIIQSAS 702


>gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera]
          Length = 2091

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/565 (15%), Positives = 165/565 (29%), Gaps = 147/565 (26%)

Query: 124  EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
            +E ++ ++       +     +N+       R     C   V  TR +   L  L   E+
Sbjct: 1570 KEVRKRLSSEAAAAANRSGRWKNQTR-----RAAHNGCCRRVAQTRALCSVLWKLLVSEE 1624

Query: 184  ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                       L  +   +   G  VD+        ++  +   L++E   L  G+  S 
Sbjct: 1625 LVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEKEAYELA-GMTFSL 1683

Query: 234  RCLEKLKTWLFLETGLHLE---DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
                 +   L+    L +    +  +   +T +  L   +   P    +  +R  A    
Sbjct: 1684 YTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPVIKEHRTLAKL-- 1741

Query: 288  VLKLNTLVEAMNSDGRLRGTLQ--------FLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               LN  + ++ S  RL    Q           ++ TGR S      Q +      H   
Sbjct: 1742 ---LNCTLGSICSLARLSLQTQRYTLHGHWLQTSTATGRLSMEEPNLQCV-----EHVVE 1793

Query: 340  DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
             ++I        S+ D  +I +   R   + S E   L+ AD + IE R++A  + +   
Sbjct: 1794 FKMIKGNKDVCNSEADHYKINA---RDFFVPSQENWLLLTADYSQIELRLMAHFSRDSSL 1850

Query: 399  LKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +       D++    A+      + V   +R   K +   + Y  GA      A     
Sbjct: 1851 TELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLVYGILYGMGANTL---AKQLEC 1907

Query: 458  NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +L      +                                         +++R     V
Sbjct: 1908 SLGEAEEKI-----------------------------------------RSFRSSFPGV 1926

Query: 518  SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +     LH+A     + G     + R+                     R L     G ++
Sbjct: 1927 ASW---LHEAVACCCKKGYVKTLKGRK---------------------RFLSKIKFGTSK 1962

Query: 578  SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------------------- 618
              L     +  R+         +I Q  + DI+   M+N                     
Sbjct: 1963 EKL-----KARRQ------AVNSICQGSAADIIKIAMINIHSVIAEGVDEPNSSTELPAK 2011

Query: 619  ----KAGYDIVLTVHDEIVCETPDT 639
                K    I+L VHDE+V E   +
Sbjct: 2012 FHMLKGRCRIILQVHDELVLEVDPS 2036


>gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5]
          Length = 825

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/530 (16%), Positives = 158/530 (29%), Gaps = 81/530 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI----HRWICTLVLARSNG-LPSALKA 111
           L++ L++ + TIV HN  F+    K    L         R   T++              
Sbjct: 175 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 234

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A+K +     +  EL            +   +       + +   Y   D   T  +
Sbjct: 235 KSLAMKYTDMGDYDF-ELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRL 293

Query: 172 FKRLEPLSSKEQEL--WYLD---------QTINDRGYCVDVALAHTLNQIV------DVE 214
                P   K ++L   Y D         Q + DRG  + +         +        E
Sbjct: 294 HNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKARE 353

Query: 215 RTKLDQELESLTY--GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNK 267
           +     E++ L        +   +++L+  LF   GL     LT+T    T    L+   
Sbjct: 354 KLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELA 413

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P A  +   R + ++     +  ++ ++++DG +R        +     S      Q
Sbjct: 414 TQHPIAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQ 472

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LPR                                ++ CV+A  G +++  DL   E  
Sbjct: 473 QLPRDE----------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 504

Query: 388 VLAWMAGEQWKLKAFETGE-------DLYVTTYARSFNV--APAQVTK---DQRAIGKVM 435
             A ++G++   + F           D +       F +   P  V K     R   K +
Sbjct: 505 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 564

Query: 436 ELALGYQGGAK--------AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
              + Y  G          A  + A+ TG                  +       RW+ +
Sbjct: 565 TFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDK 624

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
            H +      FI +   R K+     HS    +  E  ++    I    +
Sbjct: 625 CHDQI-KNHGFIYSHFGR-KRRLHNIHSEDRGVQGEEIRSGFNAIIQSAS 672


>gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5]
 gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/530 (16%), Positives = 158/530 (29%), Gaps = 81/530 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI----HRWICTLVLARSNG-LPSALKA 111
           L++ L++ + TIV HN  F+    K    L         R   T++              
Sbjct: 205 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A+K +     +  EL            +   +       + +   Y   D   T  +
Sbjct: 265 KSLAMKYTDMGDYDF-ELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRL 323

Query: 172 FKRLEPLSSKEQEL--WYLD---------QTINDRGYCVDVALAHTLNQIV------DVE 214
                P   K ++L   Y D         Q + DRG  + +         +        E
Sbjct: 324 HNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKARE 383

Query: 215 RTKLDQELESLTY--GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNK 267
           +     E++ L        +   +++L+  LF   GL     LT+T    T    L+   
Sbjct: 384 KLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELA 443

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P A  +   R + ++     +  ++ ++++DG +R        +     S      Q
Sbjct: 444 TQHPIAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQ 502

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LPR                                ++ CV+A  G +++  DL   E  
Sbjct: 503 QLPRDE----------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 534

Query: 388 VLAWMAGEQWKLKAFETGE-------DLYVTTYARSFNV--APAQVTK---DQRAIGKVM 435
             A ++G++   + F           D +       F +   P  V K     R   K +
Sbjct: 535 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 594

Query: 436 ELALGYQGGAK--------AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
              + Y  G          A  + A+ TG                  +       RW+ +
Sbjct: 595 TFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDK 654

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
            H +      FI +   R K+     HS    +  E  ++    I    +
Sbjct: 655 CHDQI-KNHGFIYSHFGR-KRRLHNIHSEDRGVQGEEIRSGFNAIIQSAS 702


>gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/530 (16%), Positives = 158/530 (29%), Gaps = 81/530 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI----HRWICTLVLARSNG-LPSALKA 111
           L++ L++ + TIV HN  F+    K    L         R   T++              
Sbjct: 205 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A+K +     +  EL            +   +       + +   Y   D   T  +
Sbjct: 265 KSLAMKYTDMGDYDF-ELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRL 323

Query: 172 FKRLEPLSSKEQEL--WYLD---------QTINDRGYCVDVALAHTLNQIV------DVE 214
                P   K ++L   Y D         Q + DRG  + +         +        E
Sbjct: 324 HNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKARE 383

Query: 215 RTKLDQELESLTY--GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNK 267
           +     E++ L        +   +++L+  LF   GL     LT+T    T    L+   
Sbjct: 384 KLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELA 443

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P A  +   R + ++     +  ++ ++++DG +R        +     S      Q
Sbjct: 444 TQHPIAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQ 502

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LPR                                ++ CVIA  G +++  DL   E  
Sbjct: 503 QLPRDE----------------------------SIIKGCVIAPPGYRVIAWDLTTAEVY 534

Query: 388 VLAWMAGEQWKLKAFETGE-------DLYVTTYARSFNV--APAQVTK---DQRAIGKVM 435
             A ++G++   + F           D +       F +   P  V K     R   K +
Sbjct: 535 YAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAI 594

Query: 436 ELALGYQGGAK--------AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
              + Y  G          A  + A+ TG                  +       RW+ +
Sbjct: 595 TFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDK 654

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
            H +      FI +   R K+     HS    +  E  ++    I    +
Sbjct: 655 CHDQI-KNHGFIYSHFGR-KRRLHNIHSEDRGVQGEEIRSGFNAIIQSAS 702


>gi|225430047|ref|XP_002281624.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2100

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/556 (13%), Positives = 144/556 (25%), Gaps = 166/556 (29%)

Query: 124  EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
            +E ++ ++       +     +N+       R     C   V  TR +   L  L   E+
Sbjct: 1618 KEVRKRLSSEAAAAANRSGRWKNQTR-----RAAHNGCCRRVAQTRALCSVLWKLLVSEE 1672

Query: 184  ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                       L  +   +   G  VD+        ++  +   L++E   L  G+  S 
Sbjct: 1673 LVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEKEAYELA-GMTFSL 1731

Query: 234  RCLEKLKTWLFLETGLHLE---DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
                 +   L+    L +    +  +   +T +  L   +   P    +  +R  A    
Sbjct: 1732 YTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPVIKEHRTLAK--- 1788

Query: 288  VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                                L           +      Q        H    Q  T   
Sbjct: 1789 --------------------LLNCTLGSICSLARLSLQTQ----RYTLHGHWLQTSTATG 1824

Query: 348  TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GE 406
                 +P+                E   L+ AD + IE R++A  + +    +       
Sbjct: 1825 RLSMEEPNLQ--------------ENWLLLTADYSQIELRLMAHFSRDSSLTELLSKPHG 1870

Query: 407  DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
            D++    A+      + V   +R   K +   + Y  GA      A     +L      +
Sbjct: 1871 DVFTMIAAKWTGKPESVVGYQEREQTKRLVYGILYGMGANTL---AKQLECSLGEAEEKI 1927

Query: 467  KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                     +++R     V+     LH+
Sbjct: 1928 -----------------------------------------RSFRSSFPGVASW---LHE 1943

Query: 527  AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            A     + G     + R+                     R L     G ++  L     +
Sbjct: 1944 AVACCCKKGYVKTLKGRK---------------------RFLSKIKFGTSKEKL-----K 1977

Query: 587  LTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----------------------KAGYD 623
              R+         +I Q  + DI+   M+N                         K    
Sbjct: 1978 ARRQ------AVNSICQGSAADIIKIAMINIHSVIAEGVDEPNSSTELPAKFHMLKGRCR 2031

Query: 624  IVLTVHDEIVCETPDT 639
            I+L VHDE+V E   +
Sbjct: 2032 IILQVHDELVLEVDPS 2047


>gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
          Length = 975

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 96/590 (16%), Positives = 188/590 (31%), Gaps = 131/590 (22%)

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
              +     LD  I  W+     A  +      K +G    L+   M           + 
Sbjct: 333 WKCVAGFVGLDPRIAAWLIDPSDAAPSFEDLVAKYLGNPTTLTVNSMHGNS------SRK 386

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
             ++ +  + +  H    RL    C        ++    +   + E  L  +   +    
Sbjct: 387 TVNQTVRAKLRVLH----RLTMHLCSQ-----LQVCGLWQLFWTLELPLIPILAVMESHR 437

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             V+      ++ ++     +L+QE   +  G         +L+  LF +  LHL    +
Sbjct: 438 IRVNKEEMERMSALLGSRLKELEQEAHFVA-GEQFLITSNHQLREILFGKLRLHLLRPQD 496

Query: 257 -----------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
                      +T    L++ + L P    +   R      +       + A    G + 
Sbjct: 497 ASPATGLRRLPSTSGAELNALQDLHPLPRIILEYRQVHKIKST--FVDGLLACMKKGSVS 554

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T    G + +GR S      Q +           Q        ++  P          R
Sbjct: 555 STWNQTG-TVSGRLSAKHPNIQGI-SKHPIQITKPQSFKGEEDELSISP----------R 602

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQ 423
           +  ++SEG   + AD + IE R+LA ++G+   LK F+  E  D++ T  ++  +V+P +
Sbjct: 603 TAFVSSEGYTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVSPER 662

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT   R   K +  A+ Y  G    +++A+  G+ +   A  +            E+F +
Sbjct: 663 VTHADREQTKKVVYAVVYGAGK---ERLAACLGVPVREAARFL------------ESFLQ 707

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
             ++                  +K   +   +R  +                ++I+ R+R
Sbjct: 708 KYKK------------------IKDFTQATVARCQQ------------TGYVESIMGRRR 737

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                             LP  R+                  Q  R+          +VQ
Sbjct: 738 P-----------------LPRIRAHDP-----------QLRAQAERQ------AANFVVQ 763

Query: 604 AVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDT--DEFNA 644
             + D+    M+    A          ++  +HDE++ E  D+   EF A
Sbjct: 764 GSAADLCKMAMIRIFTAMATSPTLTARLLAQIHDELLFEVEDSQVPEFTA 813


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/491 (17%), Positives = 148/491 (30%), Gaps = 71/491 (14%)

Query: 15   DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNS 73
            DL   G+  +A D  V L +         L D    P     L   LE    V +V  N 
Sbjct: 918  DLETTGL-SHARD-RVRLLSLATPSGTF-LVDLFALPDPAAALAPLLEALTAVEVVGQNL 974

Query: 74   YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK-LSSQKMEEGKELIAR 132
             F+   L     L     R   T++ ++     +  +  G +LK L+ + +  G EL   
Sbjct: 975  GFDLPFL---MRLGFVPGRVRDTMLASQVLH--AGNRTTGHSLKDLAHRHL--GLELDKG 1027

Query: 133  FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                +    L D +             Y   D  +   +++RL P  +        +  +
Sbjct: 1028 LQTADWSGPLTDAHL-----------GYAARDAELPLALWERLAPELAAAHLTGTAEAEM 1076

Query: 193  N---------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
                        G   D          V  +              L+ ++  L  +  W 
Sbjct: 1077 AALPAVAWAARHGVGFDRP----AWDAVAADTEACAARAREHLDELLPNAGNLFGVTNWN 1132

Query: 244  F-LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
               E                  +   +   A  +      AS+ +       +  +  DG
Sbjct: 1133 SVDEVTAAFAAAGVALTSTGDDALAAVAHPAAALLREHRAASKLSGTYGRGWLRHVADDG 1192

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            R+    + +GA                                       DP+  Q+  D
Sbjct: 1193 RVYAAWKQVGAG------------------------------ASGRMSCKDPNLQQLPRD 1222

Query: 363  -CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
               R C +   G+ LV AD + IE R+ A + G++  L A++ GEDL+ TT         
Sbjct: 1223 PRFRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQKGEDLHTTTARAVLGKT- 1281

Query: 422  AQVTKDQRAIGKVMELALGYQGG-AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VTK  R + K +   L Y  G        AS  G+ L         ++    +     
Sbjct: 1282 -DVTKADRQLSKSLNFGLLYGMGAKALAAYAASNFGVALTEGEAADHRDAFFRTYPGLRA 1340

Query: 481  FCRWMQENHPE 491
            + R + +   +
Sbjct: 1341 WHRKVPDGIIQ 1351


>gi|126332210|ref|XP_001374207.1| PREDICTED: similar to polymerase (DNA directed) nu, [Monodelphis
           domestica]
          Length = 816

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 146/397 (36%), Gaps = 43/397 (10%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +    + VD       ++++     +L+QE   +  G         +L+ 
Sbjct: 431 ELPLIPILAVMETHKFQVDKEEMKRTSKLLGCRLKELEQEAH-VAAGEQFLVTSNNQLRE 489

Query: 242 WLFLETGLHLEDLTET-----------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            LF +  LHL   ++T           T + VL++ + L P    +   R    +     
Sbjct: 490 VLFDKLKLHLLCKSKTLPKTELQKHPSTSEAVLNALQDLHPLPKIILEYRQ-IHKVKSTF 548

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---PRPSRSHEELDQIITHLP 347
           ++ L+  M   G +  T    G + +GR S      Q +   P     H + +Q      
Sbjct: 549 VDGLLSCMRK-GFIAPTWNQTG-TVSGRLSAKKPNIQGISKHPIQITKH-QYEQGKEDEK 605

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TG 405
           T+++             R+  I+S+G   + AD + IE R+LA ++ +   LK F+    
Sbjct: 606 TTVSP------------RTMFISSKGYTFLAADFSQIELRILAHLSCDPELLKLFQEPES 653

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++++  ++   +   QVT  +R   K +  ++ Y  G    +++A+  G+     +  
Sbjct: 654 LDVFMSLTSQWKGIPLEQVTHVEREQTKRIVYSVVYGAGK---ERLAACLGVTSLQSSQF 710

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +++    ++++   +F +               +G      ++     +++   L  +  
Sbjct: 711 IESFL--QKYKKIHDFTQETIMQCHHKGYVTSIMGR-----RRPLPNINAKDYRLRTQAE 763

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
           +     +  G A    K   + +         L   L
Sbjct: 764 RQAVNFVVQGSAADLCKIAMIRIFTSIATSPKLTARL 800


>gi|224050209|ref|XP_002195724.1| PREDICTED: similar to polymerase (DNA directed) nu [Taeniopygia
           guttata]
          Length = 631

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 88/517 (17%), Positives = 171/517 (33%), Gaps = 53/517 (10%)

Query: 65  DVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            V I+  N+  F RT+L   +  +I   +   ++VL            +   L   S  +
Sbjct: 134 KVPIICFNAKDFLRTLL-QIYGNEISWKQVANSVVLD---------PRIAAWLINPSDTV 183

Query: 124 EEGKELI-ARFCKGETHECLYD-----RNKPNHREAWRLFGEYC-KGDVTVTREIFKRLE 176
              + LI   F K  +           RN         L   Y    D+    +      
Sbjct: 184 PSFECLIQKYFEKPFSKGAENTDTDTLRNISYQNLGVNLEKLYNVMMDLAHGLKAQGLWN 243

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  L  +   +      VD       ++I+ +   +L++E   +  G        
Sbjct: 244 LFCTLELPLIKILAVMETHKIYVDKQELKKTSEILGLRLKELEREAHEVA-GERFLLTSS 302

Query: 237 EKLKTWLFLETGLHL--EDLTET-------TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +L+  LF +  LH   E L  T       T + VL+  + L P    +   R      +
Sbjct: 303 CQLREVLFDKLKLHTLCEKLQRTEIQQLVSTSEVVLNKLQDLHPLPKIILEYRQVHKMKS 362

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                  +      G +  T    G + TGR S      Q + +           I    
Sbjct: 363 T--YVDGLRTCMKKGFISSTWNQTG-TVTGRLSAKHPNIQGISKH-------PVTIAKKQ 412

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE- 406
                + D + I     R+  ++ +G   + AD + IE R+LA ++ E   LK F+  E 
Sbjct: 413 YIKGKEEDIITISP---RTLFVSKKGCTFLAADFSHIELRILADLSSEPELLKLFQEPEI 469

Query: 407 -DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++ T  ++   +   QV    R   K +  ++ Y  G    +++A   G+     +  
Sbjct: 470 TDIFATLASQWKGIPSEQVKHADREQAKRIVYSVVYGAGK---ERLADCLGITPVQASQF 526

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           +++       +  +    + ++   E      ++ +   R K+     +++  +L  +  
Sbjct: 527 IES-----FMQKYKKVHEFTKKTI-EQCRNKGYVVSIMGR-KRPLANINAQDYKLRTQAE 579

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
           +     +  G A    K   V +         L   L
Sbjct: 580 RQAVNFVVQGSAADLCKMAMVKIFASIVISPTLTARL 616


>gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix
           jacchus]
          Length = 965

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 102/608 (16%), Positives = 194/608 (31%), Gaps = 133/608 (21%)

Query: 71  HNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            N+  F R VL   F  +            A   GL      +   L   S      ++L
Sbjct: 382 FNAKDFVRIVL-QFFGNNGSWKHV------ADFVGLD---PRIAAWLIDPSDAAPSFEDL 431

Query: 130 IARFC------KGETHECLYDRNKPNHREAWRLFGEY-CKGDVTVTREIFKRLEPLSSKE 182
           + ++C      K  +      RN  N      L   Y    D+    + +   +   + E
Sbjct: 432 VEKYCDKSITVKVSSTYGNSSRNIVNQNVRENLKILYRLTMDLCSKLKDYGLWQLFCTLE 491

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +      V+       + ++     +L+QE   +  G         +L+  
Sbjct: 492 LPLIPILAVMESHTIQVNKEEMEKTSSLLGARLKELEQEAHFVA-GEQFLIMSNNQLREI 550

Query: 243 LFLETGLHLED-----------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           LF +  LHL                +T + VL++ + + P    +   R      +    
Sbjct: 551 LFGKLKLHLLSPRNCFPRTGLQKYPSTSEAVLNALRDVHPLPKIILEYRQVHKIKST--F 608

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
              + A    G +  T    G + TGR S      Q + +           IT       
Sbjct: 609 VDGLLACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQ-------ITKPKNFKG 660

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLY 409
            + + L I   C R+  ++S+G   + AD + IE R+LA ++G+   LK F+  E  D++
Sbjct: 661 KEDEILTI---CPRAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVF 717

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            T  ++  +V    VT   R   K +  ++ Y  G    +++A+  G+ +   A      
Sbjct: 718 STLTSQWKDVPVEHVTHADREQTKKVVYSVVYGAGK---ERLAACLGVPVQEAA------ 768

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                              +  +++ QK+ ++ +       A  
Sbjct: 769 -----------------------------------QFLESFLQKYKKIKDF---AQAAIA 790

Query: 530 QTIENGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           Q  + G  + I  +RR +P ++ +                                 Q  
Sbjct: 791 QCHQTGYMVSIMGRRRPLPRIHARDQ---------------------------QLQAQAE 823

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDTDE 641
           R+          +VQ  + D+    M+    A          +V  +HDE++ E  D+  
Sbjct: 824 RQ------AVNFVVQGSAADLCKLAMIRVFAAVAASHTLTARLVAQIHDELLFEVEDSQI 877

Query: 642 FNASMLYH 649
              + L  
Sbjct: 878 PECAALVR 885


>gi|224143022|ref|XP_002324822.1| predicted protein [Populus trichocarpa]
 gi|222866256|gb|EEF03387.1| predicted protein [Populus trichocarpa]
          Length = 646

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 83/527 (15%), Positives = 154/527 (29%), Gaps = 98/527 (18%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALA 204
           R+    C   V  TR +   L  L + E            L  +   +   G  VD+   
Sbjct: 154 RVAHNGCCRRVAQTRALCSGLWKLLTSEGLFEALKNIEIPLVNVLADMELWGIGVDMEGC 213

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETT 258
                ++      L+++   L  G+  S      +   L+    L +           +T
Sbjct: 214 LNARTVLGKRLRYLEKKAYKLA-GMTFSLYTAADIANILYRHLKLPIPEGHNKGKKHPST 272

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG------ 312
            +  L   +   P    +     R  R+    LN+ + ++ S  RL    Q         
Sbjct: 273 DKHCLDLLRHEHPIVPVI-----REHRTLAKLLNSTLGSICSLARLSMETQKYTLHGHWL 327

Query: 313 --ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             ++ TGR S      Q          + +            +   +       R   + 
Sbjct: 328 QTSTATGRLSIEEPNLQ----CVEHAVDFEMSSDKEGDDAEPEHYKINA-----RDFFVP 378

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQ 428
             +   L+ AD + IE R++A  + +   +K       D++    AR      A V+  +
Sbjct: 379 TQDNWLLLTADYSQIELRLMAHFSKDTALIKLLTKPHGDVFNLIAARWTGKPEASVSSVE 438

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K M   + Y  GA      A     + +  A  +K+  +   +    ++      +
Sbjct: 439 RDQTKRMVYGILYGMGANTL---AEQLDCSSDEAAEKIKSFKSS--FPGVASWLHEAVAS 493

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
             E    +   G      K+   +     SE  ++  +    +I  G A    K   + +
Sbjct: 494 CREKGYVETIKGR-----KRFLSKIKFGNSEEKSKAQRQAVNSICQGSAADLIKIAMINI 548

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
             +  D     +  P   SL                                        
Sbjct: 549 HSLIVDG----VGRPESSSLHANKFH---------------------------------- 570

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654
                M+   K    I+L VHDE+V E   +    A++L  + M   
Sbjct: 571 -----ML---KGQCRILLQVHDELVLEVDPSLINEAAVLLQMSMEDA 609


>gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
 gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
          Length = 711

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 76/223 (34%), Gaps = 41/223 (18%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y   ++   G  V+          + V+   L+QE+   T G   +    ++L
Sbjct: 519 EIEMPLIYSLSSMEQAGVKVEREELKEYGSRLKVQIDVLEQEIYRDT-GKEFNINSPKQL 577

Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L     T+T   T   VL       P   ++ + R    +        L  
Sbjct: 578 GEILFGDMALPGGKKTKTGYSTAADVLEKLAPDYPVVQKILDYRQLT-KLYSTYAEGLAA 636

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            + SDGR+ G                               + +Q IT      +++P+ 
Sbjct: 637 FIGSDGRIHG-------------------------------KFNQTITATGRISSTEPNL 665

Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
             I     +   +R   +  EG   V AD + IE R+LA M+G
Sbjct: 666 QNIPVRMELGREIRKVFVPREGSVFVDADYSQIELRILAHMSG 708


>gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
 gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
          Length = 96

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 1  MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
          M  L +D ET S ++L KCG+ KYAE  D  ++LF +  D   V++ D      +P+V+ 
Sbjct: 1  MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60

Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD 87
           AL +  VT  A N+ FER  L       
Sbjct: 61 SALTDETVTKWAFNAQFERVCLSRYLRDK 89


>gi|156377033|ref|XP_001630662.1| predicted protein [Nematostella vectensis]
 gi|156217687|gb|EDO38599.1| predicted protein [Nematostella vectensis]
          Length = 425

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 108/352 (30%), Gaps = 52/352 (14%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  +      +   G+    A    L  I+  +   L+QE   L      S    +  
Sbjct: 106 KVEMPVMQCLVRMELNGFGFSEAECDRLKAILQAKLRTLEQEAYRLA-NHSFSLTSPD-- 162

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
                               + VL   K L P    +   R        +      E + 
Sbjct: 163 -----------------DVAREVLERLKSLHPLPRIILEWRRVNCALTKVVFPVQREKLF 205

Query: 300 SDG----RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
                  R+  T Q    + TGR S      QN+PR      EL  +I   P   T   +
Sbjct: 206 HKSLHMSRIYPTSQTH--TTTGRVSFNEPNLQNVPRDFEI--ELPSVIAESPPLGTRRRE 261

Query: 356 PLQIISDC----------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            +Q  +            +R+  +   G  L+ AD + +E R++A +A +    K    G
Sbjct: 262 NIQKPARSDHSGMSCAVSMRTAFVPCAGGVLLAADYSQLELRLIAHLADDSRLRKVLNGG 321

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++         + P  V   QR   K +   + Y  GAKA         L     +  
Sbjct: 322 GDVFRMIAGSLAGLEPGSVDDKQRQRAKQICYGIIYGIGAKAL---GEQLELGEEDASMY 378

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++   +        +  R   ++  E   +  ++ T  +R     R+    V
Sbjct: 379 IEKFKSR------FSGIRRYLKSTVEQCRKTGYVTTITKR-----RRYLPAV 419


>gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 310

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 86/366 (23%), Positives = 138/366 (37%), Gaps = 94/366 (25%)

Query: 274 IQVFNNRMRASR-SAVLKLNTLVEAMNS----DGRLRGTLQFLGASRTGRWSGC-VFPPQ 327
           + +F  R RA    AV +   LV+A+N     D +L   L + GA  TGR+ G      Q
Sbjct: 9   LPIFEARERAKSNQAVSRAKKLVQAVNGRPNNDNKLVVPLVYYGA-HTGRYGGNEGLNLQ 67

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           NL R S                               R  + A  G+ + VAD + IEAR
Sbjct: 68  NLQRGSEH-----------------------------RKALTAPFGQLVYVADSSNIEAR 98

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT-KDQRAIGKVMELALGYQGGAK 446
           ++AW A E   L  F+ G D Y T     +     + T + +R +GKV  L L Y  GA+
Sbjct: 99  IVAWFAQETALLNQFKNGIDTYATLATDIYGFPVTKQTHQLERNVGKVARLGLQYGMGAR 158

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            F +   +  + +            P  W   E                        E++
Sbjct: 159 TFHRTMESGPMGI-----------PPMPWAFPE-----------------------IEKI 184

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            K +R+ H  + + W   +Q  ++ I          R+D    +      +  L LP+G 
Sbjct: 185 VKTYRRTHPMIKKCWEIGNQIIQKMI----------RKDTLETWRCLTVRHQCLELPNGM 234

Query: 567 SLVYRDVGNNR-------------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
            L + ++ N                  +  +++L  +  YGGKL ENI QA++   + E 
Sbjct: 235 YLQFPNLRNKEIQTAQGPQYEVVYDSYDYKSKKLVEKRLYGGKLLENIAQALAGLAMKEM 294

Query: 614 MMNATK 619
           M++  +
Sbjct: 295 MLDIQE 300


>gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7]
 gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7]
          Length = 855

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 84/530 (15%), Positives = 155/530 (29%), Gaps = 81/530 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNG-LPSALKA 111
           L++ L++ +  IV HN  F+         L         R   T++              
Sbjct: 205 LQKILDSKNHQIVFHNLKFDMHFYSYHLGLSFEKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A+K +     +  EL            +   +       + +   Y   D   T  +
Sbjct: 265 KSLAMKYTDMGDYDF-ELDKFKEDYCKAHKIKKEDFSYDLIPFDIMWPYAAKDTDATLRL 323

Query: 172 FKRLEPLSSKEQEL--WYLD---------QTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
                P   K ++L   Y D         Q + DRG  + V         +     K  +
Sbjct: 324 HNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISVDRLKEAQYQLTHNLNKARE 383

Query: 221 ELE--------SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNK 267
           +L                 +   +++L+  LF   GL     LT+T    T    L+   
Sbjct: 384 KLYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTNAEALNELA 443

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P A  +   R + ++     +  ++ ++++DG +R        +     S      Q
Sbjct: 444 TQHPIAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQ 502

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LPR                                ++ CV+A  G +++  DL   E  
Sbjct: 503 QLPRDE----------------------------SIIKGCVVAPPGYRVIAWDLTTAEVY 534

Query: 388 VLAWMAGEQWKLKAFET-------GEDLYVTTYARSFNV--APAQVTK---DQRAIGKVM 435
             A ++G++   + F           D +       F +   P  V K     R   K +
Sbjct: 535 YAAVLSGDRNMQQVFINMKNEPDKYPDFHSNIAHMVFKLTCEPRDVKKLFPALRQAAKAI 594

Query: 436 ELALGYQGGAK--------AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
              + Y  G          A  + A+ TG            +     +       RW+ +
Sbjct: 595 TFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKDYIETYFGQFPQLKRWIDK 654

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
            H +      FI +   R K+     HS    +  E  ++    I    +
Sbjct: 655 CHDQI-KNFGFIYSHFGR-KRRLHNIHSEDRGVQGEEIRSGFNAIIQSAS 702


>gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 143

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           +V A + GLP +LK VG+ L L +QKM+EGK+LI  FC  + +     R   +    W+L
Sbjct: 1   MVWAATLGLPLSLKDVGKVLNLDAQKMDEGKDLIKHFCVPDDNSQ--RRLPSSDPAGWKL 58

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F  Y   DV V   I ++L   P+     E + +DQ INDRG  +D  LA +   I +  
Sbjct: 59  FQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTLAASAITIDEKH 118

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKT 241
           R +       LT   + +     +L+ 
Sbjct: 119 RAQALARAHKLTG--LDNPASPLQLQE 143


>gi|153792006|ref|NP_001093496.1| DNA polymerase nu [Danio rerio]
 gi|108735435|gb|ABG00195.1| DNA polymerase nu [Danio rerio]
          Length = 1146

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 135/390 (34%), Gaps = 43/390 (11%)

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +  S  EQ++  +   +      VD       ++++  +  +L+QE      G     
Sbjct: 700  LWQLYSGIEQKMIPVLAAMESYKMHVDKEALKKTSEMLGSKLKQLEQEAHQ-AAGQKFLV 758

Query: 234  RCLEKLKTWLFLETGL----------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                +L+  LF +  L                ++T +  L   +KL P    +   R   
Sbjct: 759  SSSAQLRLILFEKLRLHELCENKKLPKTVKQQQSTSETALLQLQKLHPLPKIILEYRQ-I 817

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
             +     ++ ++        +  T     ++ +GR S      Q LP+            
Sbjct: 818  HKIKTTFVDGILSCTRKT-FISSTWNQT-STVSGRLSAKHPNFQALPK------------ 863

Query: 344  THLPTSITSDPDPLQIISDCV----RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              LP  I+         SD V    R+  I  EG   + AD   +E R+LA ++ +   L
Sbjct: 864  --LPLQISKKQYIHGKASDIVTVHPRAMFIPREGWTFLSADFCQVELRLLAHLSADPQLL 921

Query: 400  KAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            + F++   D +    A+   V+  +V+ + R   K +  ++ Y  G    ++++   G++
Sbjct: 922  RIFQSPEADAFTMLAAQWKGVSEDRVSLEDREQAKRIVYSVVYGAG---RERLSGILGVS 978

Query: 459  LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                +    +    + + +   F +   ++   H      +G      ++     HS   
Sbjct: 979  AEEASRFQDSFL--KTYREVPAFIQHTIQHCQSHGFVRSIMGR-----RRFLPHIHSADW 1031

Query: 519  ELWNELHQAFEQTIENGKAIIARKRRDVPL 548
             L N+  +     +  G A    K   + +
Sbjct: 1032 SLRNQAERQAVNFVLQGSAADLAKLAMIRI 1061


>gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex]
          Length = 1781

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/532 (14%), Positives = 149/532 (28%), Gaps = 133/532 (25%)

Query: 155  RLFGEYCKGDVTVTREIFKRLE------PLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                  C   + +  ++ +RL       P    E  +      +   G   D +    + 
Sbjct: 1331 EKILHECCALLDIFHQLKQRLSKEELLQPFVDVEMPMVATMLRMEQIGIAFDRSNCELIL 1390

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW-------LFLETGLHLEDLTETTCQR 261
            QI+      L++    L  G   S    +++          +  +      +  +   Q 
Sbjct: 1391 QILRNHLKMLEEAAHRLA-GRSFSLTSTKEVSKIVASLNLCIEEKNPQSFINPLKKKFQP 1449

Query: 262  V------LSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLG 312
            +      L    ++ P    V   R  ++    +    L      ++   R+ G  +F  
Sbjct: 1450 LSVSKASLIKLGRIHPLPRVVVEFRKVSAIIQTIICPLLQASTFHVSGVERIAGECEFRN 1509

Query: 313  ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            A  TGR +      Q++PRP                   SD   +      VRS   A+ 
Sbjct: 1510 A--TGRVNIVQPNLQHIPRP----------------FSLSDGRMIN-----VRSAFHAAT 1546

Query: 373  GKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAI 431
            G  L+ AD + +E R+LA ++ +            D++    +         VT D+R  
Sbjct: 1547 GTTLLSADYSQLELRILAHLSEDTGLCSILSKPNGDVFRGIVSVWKKKKQEDVTDDERQQ 1606

Query: 432  GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             K +   + Y  G    + +A    ++                                 
Sbjct: 1607 AKQICYGIVYGMGC---KSLAEQLEVSEEEAQ---------------------------- 1635

Query: 492  HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                             ++   +  + +    +          G  I    RR       
Sbjct: 1636 -------------LFVDSFHSTYPNIQKF---ITNTINMCRSKGFVITLLGRR------- 1672

Query: 552  KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                      LPS  S                  Q  R+           +Q  + D++ 
Sbjct: 1673 --------RFLPSINSNNAAQR-----------AQAERQ------AVNTKIQGSAADLVK 1707

Query: 612  EGMMNATKAGYD------IVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPS 656
              ++   ++  +      +V  +HDE++ E P    E  A ++ H M +   
Sbjct: 1708 TAVILLNRSLKEKLSDVHLVHQIHDELLFEIPTNCVERAARVVRHCMETAIP 1759


>gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia]
 gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia]
          Length = 2006

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 154/488 (31%), Gaps = 99/488 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G+         L Q +     KL+ ++    +G   +    + +
Sbjct: 1600 DIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYE-QHGSRFNLGSSQAV 1658

Query: 240  KTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L    GLH +     TT ++VL      +P +  +   R  +   A   +  L+E  
Sbjct: 1659 AKVL----GLHRKAKGRVTTSRQVLEKLN--SPISHLILGYRKLSCLLAKS-IQPLMECC 1711

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             +D R+ G      A  TGR S      QN+ +     E   Q+           P    
Sbjct: 1712 QAD-RIHGQSITYTA--TGRISMTEPNLQNVAK-----EFCIQVGADAVNISCRSP---- 1759

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                     +   E + L+ AD   +E R+LA M+ ++  L+   + +DL++   A    
Sbjct: 1760 --------FMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNK 1811

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            +  ++VT D R   K +   + Y  G    + +A +   +      L       +++ +A
Sbjct: 1812 IKESEVTPDLRNSTKQVCYGIVYGMG---MRSLAESLNCSEQEARIL------SDQFHEA 1862

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                R         A    F+ T   R ++     +S +  L     QA   TI+   A 
Sbjct: 1863 YKGIRDYTRRVVNFARGKGFVETITGR-RRYLEMINSDMEHLKKAERQAVNSTIQGSAAD 1921

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            IA+                                       N   +       Y  KL 
Sbjct: 1922 IAK---------------------------------------NAILKMEKNIERYREKLA 1942

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657
                                    D+V+ +HDE++ E P       + +  + M S    
Sbjct: 1943 ------------------LGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK- 1983

Query: 658  AKGLPLKA 665
               +PLK 
Sbjct: 1984 -LSVPLKV 1990


>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
 gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
          Length = 1178

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 106/767 (13%), Positives = 202/767 (26%), Gaps = 246/767 (32%)

Query: 42   VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
            V++ D     +M        E+  +  V HN  F+  V++   N  I +  +    +   
Sbjct: 479  VDVLDGGRGVLM--EFAPFFEDPSIKKVWHNYSFDNHVIE---NYGIKVAGFRADTMHLA 533

Query: 102  SNGLPSALKAVGEALK-----------LSSQKMEEGKELI-----ARFCKGETHECLYDR 145
                 S     G +L+           +     + GK  +      +  + +  E     
Sbjct: 534  RLWDSSRKIDGGYSLEGLTNDRRVMDTVPEDLPKPGKISMKTIFGRKKVRKDGSEGKVVS 593

Query: 146  NKP------NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD---------- 189
              P        RE W  +      D   T  +++ L+     E   W LD          
Sbjct: 594  IDPVKELQREDRELWICYSSL---DSMSTLRLYESLKR--KLETRRWVLDGCPRGTMYDF 648

Query: 190  ------------QTINDRGYCVDVALAHTLNQIVDVERTKL------------------- 218
                          +   G  VD      + +    ER                      
Sbjct: 649  YEQYWCPFGALLVKMETEGMLVDRGYLSEIEKAAIAERELAADKFRKWASKYCPDAKYMN 708

Query: 219  ---DQELESLTYGLVSS-----SRCLE-KLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
               D ++  L +G + +         + K    L  E      +  +T+  R +     +
Sbjct: 709  VNSDTQIRQLLFGGIENRHKSGETWPQSKTFKVLNEEN--VATEGKKTSKYRTIKLCSIV 766

Query: 270  TPQAIQVFN-----------NRMRASRSAVLKLNTLVEAMNSDGRLRGT----------- 307
                  +F             R  A +     + T+ +    D    G+           
Sbjct: 767  EDLKTDMFTPSGWPSASGDALRSLAGKIPTEYIYTMGDIQEDDEDSSGSENPDGDSSYGT 826

Query: 308  -LQFLGASRTGR------------------WSGCVFPPQNLPRP---SRSHEELDQIITH 345
              +  G  + G+                   S  + P Q         R H  L+ I T 
Sbjct: 827  AYEAFGGGKNGKEACHAIAALCEICSIDSLISNFILPLQGDRISCAEGRIHCSLN-INTE 885

Query: 346  LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                    P+             +R   +A+ G  L+VAD   +E R+LA +   +  L 
Sbjct: 886  TGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLD 945

Query: 401  AFETGEDLYVTTYARSFNVAPAQVT--------------------------KDQRAIGKV 434
            AF+ G D +  T    +      V                             +R   K+
Sbjct: 946  AFKAGGDFHSRTAMNMYQHIRDAVHEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKM 1005

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +  ++ Y   A     ++    +++      +K                           
Sbjct: 1006 LNFSIAYGKTA---LGLSRDWKVSVKEARDTLK--------------------------- 1035

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                                     LW    +      ++ K +   K     L+   + 
Sbjct: 1036 -------------------------LWYGDRKEVLAWQKSQKKLAREKCEVYTLLGRSRH 1070

Query: 555  KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
              NL    P  R  +       R+ +N                    VQ  + D+    M
Sbjct: 1071 FPNLTQFGPGQRGHI------ERAAINAP------------------VQGSAADVAMCAM 1106

Query: 615  MNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
            +   +       G+ ++L VHDE++ E P ++ E   +++   M+  
Sbjct: 1107 LEIERNARLKELGWRLLLQVHDEVILEGPSESAEVAKAIVVECMSKP 1153


>gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis]
          Length = 1711

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/521 (16%), Positives = 173/521 (33%), Gaps = 76/521 (14%)

Query: 48   VHDPVMPQVLKEALE--NTDVTIVAH--NSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
               P + + ++   E  + DV  +A      F+  +      +    + W   ++ +   
Sbjct: 1153 TRHPSVIEDIQNIFESFDEDVIQIAFCIKDQFKWMLNSGVHGVTTS-NNWQDPMIASWLM 1211

Query: 104  GLPSAL--KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
              P  +            S+ +           +   ++   +R       + ++     
Sbjct: 1212 D-PDNIKQGLFSLVEHYCSEHL--------YLFQDTKYDWDVNRPSYTSVSSEKVCCVES 1262

Query: 162  KGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
                 +  ++ ++L  +      +  E    Y    +   G  VD +L       +    
Sbjct: 1263 IASYILMLQLEEQLSGMNMWQHFTGVEMPHMYCVALLELNGIEVDNSLLKRYRLELHSAS 1322

Query: 216  TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
              L ++   +  G   +    +++   LF E  L                          
Sbjct: 1323 LALQEKAWKI-LGRKFNLSNPKEVSKVLFQELRLXXX------XXXXXXXXXXXXXXYPC 1375

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            + + R      A+ K+  L+ ++    GRL      L  + TGR        Q++P+   
Sbjct: 1376 IMSWR--TVNYALNKVILLINSLPPSCGRLHHKC--LTLTNTGRMIMSEPNIQSIPK--- 1428

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                  Q      +   +D +     S C+R+  +A  GK L+ AD + IE R+LA ++G
Sbjct: 1429 ------QFSITKGSKSEADSEQ----SFCLRNIFVAGNGKLLISADYSQIELRILAHLSG 1478

Query: 395  EQWKLKAFE-TGEDLYVTTYARSFN--VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            ++  + AF  +G D++ +  A  ++   +   VT  QR   K     + Y  GA+   + 
Sbjct: 1479 DETLIAAFNSSGVDIFKSIAAMFYSEISSIDDVTDKQRDTTKQTCYGILYGMGAQTLAQQ 1538

Query: 452  ASTTGLNLNTF------------------------AHLVKTNSAPEEWEDAENFCRWMQE 487
             +T+  +                               ++T S    +       R    
Sbjct: 1539 MNTSETDAQNAMDSFMNSYPMVKVYFNRLVAQCKEKGYIETISGRRRYLPEIKSVRLKMR 1598

Query: 488  NHPE-HAIEDLFIGTACERVKKAWRQKHSRVSEL-WNELHQ 526
            +H E  A+     G+A + VK A  + H  V+ L WN LHQ
Sbjct: 1599 SHAERQAVNSTIQGSAADIVKMATYKIHCAVASLGWNTLHQ 1639


>gi|224003183|ref|XP_002291263.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
 gi|220973039|gb|EED91370.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
          Length = 500

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 123/384 (32%), Gaps = 42/384 (10%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
              L  L + E  +  +   +  RG               +     L+ +  ++T     
Sbjct: 66  RDLLPSLENIEAPVQSILAAMECRGVAFYPNHLKRNEAQANERIEALEAQARTITNDSSF 125

Query: 232 SSRCLEKLKTWLFLETGLHLEDL--TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
                +++  +L+    + +      +T  QR  S                ++A ++A  
Sbjct: 126 LLSSPQQISNYLYDILKMKVPSGLVQKTKSQRSTS-------------EETLQALKAASN 172

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                +        +   L+F   ++         P   LP+  R H +  +        
Sbjct: 173 GSPHPI--------IDVILEFRTLNKLLTTYIKPLPTFCLPQ--RIHPQWSECAVRTGRL 222

Query: 350 ITSDPDPLQII---SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE- 403
               P+  Q+       VR   + S  E   L   D +  E R+LA M+G++  +  F+ 
Sbjct: 223 SCRQPNLQQVPKDDGASVRRSFVPSKKETMCLFACDYSQKEVRILAHMSGDKALISLFQM 282

Query: 404 -TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
               D+Y    +   N     +T  +RA  K + LAL Y        K      LN+   
Sbjct: 283 DANVDIYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPNQVAK-----KLNITKS 337

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             +   N     ++  +N+     E+  E A  + ++ T   R ++      S  +    
Sbjct: 338 QAIQMMNDFFRRFQGVKNW----MEDTKEFARRNHYVVTIAGR-RRYLDGIDSDDNGAKA 392

Query: 523 ELHQAFEQTIENGKAIIARKRRDV 546
           +  +    T+  G A    K   +
Sbjct: 393 QAERQAINTVIQGSAADLMKCSMI 416


>gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 88/519 (16%), Positives = 170/519 (32%), Gaps = 61/519 (11%)

Query: 68  IVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
           +V  N+  F RTVL+     D     W      A   GL      V   L   S      
Sbjct: 317 VVCFNAKDFVRTVLQLYGEDD----SWKHV---ADFVGLD---PRVAAWLIDPSDTAPSF 366

Query: 127 KELIARFC------KGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLEPLS 179
           ++L+A+        K  +      RN  +      L        D+    + +   +   
Sbjct: 367 EDLVAKHLEKSITVKPSSTFREASRNTLSQNVCMNLKILYDLTMDLCSKLKAYGLWQLFC 426

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           + E  L  +   + +    VD       + ++     +L+QE   +  G         +L
Sbjct: 427 TLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVA-GEQFLIMSNNQL 485

Query: 240 KTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +  LF +  LHL    +           +T + +L+S + L P    +   R      + 
Sbjct: 486 REILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKST 545

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---PRPSRSHEELDQIITH 345
                 + A    G +  T    G + TGR S      Q +   P               
Sbjct: 546 --FIDGLLAYMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEE 602

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             T                R+  ++SEG   + AD + IE R+LA ++G+   LK F+  
Sbjct: 603 TVTISP-------------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQES 649

Query: 406 E--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           E  D++ T  ++  ++   +VT   R   K +  ++ Y  G    +++A+  G+ +    
Sbjct: 650 ERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEAT 706

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
           H +      E +       +   +          ++ +   R ++   +  ++  +L  +
Sbjct: 707 HFL------ERFLQKYKKIKDFAQTVIGQCHSAGYVTSILGR-RRPLPRICAQDQQLRAQ 759

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             +     +  G A    K   + +         L   L
Sbjct: 760 AERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARL 798



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           Q  R      +    +VQ  + D+    M+  + A          +V  +HDE++ E  D
Sbjct: 754 QQLRAQAER-QAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVED 812

Query: 639 T--DEFNASMLYHLMT 652
           T   EF A+++  +M 
Sbjct: 813 TQVPEF-AALVRRIME 827


>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
 gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 147/472 (31%), Gaps = 81/472 (17%)

Query: 197 YCVDVALAH-TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
             VD+ +   T +    V    L      ++   V +     +L   +F +     E +T
Sbjct: 405 IRVDLPVETYTASGWPSVSGDALKTLARKISSEYVVNDAAGSQLDDVVFDD----SETMT 460

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +   +    S  +   ++  V N R         +  T  E + +   +    +      
Sbjct: 461 DEDLESKELSVVENEDESGHVGNLR---------RFQTPEEGIEACHAISSLCELCSIDS 511

Query: 316 TGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
                       NL  +  R H  L+ I T         P+             +R   I
Sbjct: 512 LISNFILPLQSSNLSGKSGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI 570

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A+ G  L+VAD   +E RVLA +A  +  L AF+ G D +  T    +      + K + 
Sbjct: 571 AAPGNSLIVADYGQLELRVLAHLANCKSMLDAFKAGGDFHSRTAVNMYPHIREAIEKKR- 629

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                               +     G +      L    ++        NF     +  
Sbjct: 630 -----------------VLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 672

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              + +        +     W ++   V + W +  +  ++  E+G+      R  V   
Sbjct: 673 VGLSRDWKVSVAEAKETVNLWYKERKEVLK-WQQARK--KEAREDGRVHTLLGRARVFP- 728

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                  +L     S R  V       R+ +NT                   VQ  + D+
Sbjct: 729 -------SLTDASSSLRGHV------ERAAINTP------------------VQGSAADV 757

Query: 610 LAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
               M+  +K       G+ ++L VHDE++ E P ++ E   +++   M+  
Sbjct: 758 AMCAMLEISKNNRLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKP 809



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 73/250 (29%), Gaps = 51/250 (20%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-- 99
           V++ D      +        E+ D+  V HN  F+  V++   N  I +  +    +   
Sbjct: 114 VDVLD-GGGRDLLHEFAPFFESPDIKKVWHNYSFDNHVIE---NYGISVSGFHADTMHMA 169

Query: 100 -----ARSNGLPSALKAVGEALKLSSQKMEEGKELIAR------FCKGETHECLYDRNKP 148
                +R      +L+A+    K+        KELI +      F K +  +   +    
Sbjct: 170 RLWDSSRRINGGYSLEALTGDQKVMRGAEPCYKELIGKVSMKNIFGKKKVKKDGSEGKLT 229

Query: 149 NHREAWRLFGE-------YCKGDVTVTREIFKRLE-------------PLSSK-----EQ 183
                  L  E       Y   D   T +++K LE             P+  K       
Sbjct: 230 TIAPVEELQREAREPWICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYL 289

Query: 184 ELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSR 234
           E W     +   +   G  VD A      ++   E+                     +  
Sbjct: 290 EYWQPFGEILVRMETEGMLVDRAYLAVTEKVAKAEQEVAASRFRKWASRYCPDAKYMNVG 349

Query: 235 CLEKLKTWLF 244
              +L+  LF
Sbjct: 350 SDTQLRQLLF 359


>gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
 gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
          Length = 1200

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/579 (14%), Positives = 176/579 (30%), Gaps = 164/579 (28%)

Query: 163  GDVTVTREIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
             D+  + +I+  L+ L           +E  +  L   +   G  ++  + +   +++D 
Sbjct: 671  QDIVYSLKIYLVLKNLLYDKDLSYNFIEEMSVVSLISKMELYGILLETKILNQYKKLLDE 730

Query: 214  ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKK 268
            +   L +         + + R + ++   ++ +  L L       + + +   + + N  
Sbjct: 731  KSANLCEYFRD---NNLLNPRSIPQVTKVIYQDLKLKLPHPPPTKVDKKSLNEIKALNPN 787

Query: 269  LTPQAIQVFNNR-------------MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                   +   R             +  + S   K +      N    ++      G + 
Sbjct: 788  QEEFINNLLIYRNLEKINKTYISAYLELADSYYDKFHQNQNESNKKAFIKCDWLQCG-TS 846

Query: 316  TGRWSGCVFPPQNLPRPS---------------------RSHEELDQIITHLPTSITSDP 354
            TGR S C    QN+ R +                      +H E DQ          +  
Sbjct: 847  TGRLSSCNPNMQNVCRNTSIISFDDEEDQASSQIDDLFLMTHIEDDQNQNQNHNQNQNQN 906

Query: 355  DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
               + I   +R   I+ +G  ++  D   IE RV++  + ++  +  F   +D+     +
Sbjct: 907  QNQETI--NIRDAFISRDGYTMLAYDYNQIELRVMSHFSNDKHLINYFNNNQDVIRRMAS 964

Query: 415  RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
            +  N     VT D+R   K +   + Y  G ++  K+   +                   
Sbjct: 965  KLLNKEINDVTTDEREKTKRVVYGIMYGIGPQSLGKLLKIS------------------- 1005

Query: 475  WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                      +A E +   + ++  ++S        + +Q    
Sbjct: 1006 -------------------------TSAAELLINNFYKEFPQISSFITTTKNSLKQNDPE 1040

Query: 535  GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
             + I  R R+      + + KN+  + +   RS                           
Sbjct: 1041 VRTISGRIRK------LGEIKNSFDISIAKRRS--------------------------- 1067

Query: 595  GKLTENIVQAVSRDILAEGMMNATKAGYDI------------------------VLTVHD 630
                  I+Q  S DI+ + M+       DI                        +L +HD
Sbjct: 1068 ---VNTIIQGSSADIIKKSMVKINNFFGDICSIFNNNNNNNNSNNNNNQISPRFLLQIHD 1124

Query: 631  EIVCETPD--TDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
            E++ E P    +E    + + +LM S    +K   LK +
Sbjct: 1125 ELIFEVPTFLIEEHRVDLYIKYLMESV---SKDFNLKVD 1160


>gi|302855051|ref|XP_002959026.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
 gi|300255592|gb|EFJ39887.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
          Length = 2736

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 132/430 (30%), Gaps = 58/430 (13%)

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
             L PL   E  L  +   +   G  +   +       ++    +L  +   +  G+    
Sbjct: 2266 LLRPLLEVEMPLVRILAAMEATGVALAPRVLRDQRGPLEARLRQLAHKAH-VAAGMTFDL 2324

Query: 234  RCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               + +   LF    L           +          ++L           +   RS  
Sbjct: 2325 NSPKDVSEVLFQHLNLQPPPCAFTSHHQKHPSTKXEVLEELEESTHHPILRYLLDYRSLH 2384

Query: 289  LKLNTLVEAMNSDGR--LRGTLQFLGASRTGRWSGCVFPPQNLPRPS-----RSHEELDQ 341
              L   VE + S  R  L G+     A+ TGR S      Q +PRP       S EE  +
Sbjct: 2385 KLLTGFVETLYSTARGQLCGSW-LHTATATGRLSMDEPNLQTIPRPVEYCFQLSQEESPR 2443

Query: 342  IITHLPTSITSD----PDPLQIISDC-------------------------VRSCVIASE 372
              T +   +       P    +                             +R+  +A  
Sbjct: 2444 ATTEMAVGVAGAEGQVPPLQPLQPAQGDGGEEAGGGGGGGGCRTVVRMHFNLRNAFVAPP 2503

Query: 373  GKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAI 431
            G  ++ AD   IE R++A  +G+           +D +    A    ++  QVT + R  
Sbjct: 2504 GHVILTADYKQIELRLMAHFSGDSALCDLLRNPAQDPFTLLAAEWKRLSVEQVTPEVRVQ 2563

Query: 432  GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             K +   + Y  G       A+  G++++  A L                 RWM+E   E
Sbjct: 2564 AKRLAYGMLYGMGTSTL---AAELGVSVHEAAELSDNFR-----RAIPGVDRWMKE-VVE 2614

Query: 492  HAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAFEQTIENGKAIIARKRRDVP 547
                  +I T   R ++ + + + R  +       +  +    ++  G A    K   + 
Sbjct: 2615 QCRSCGYIVTLMGR-RRYFPRINERSCKEARSQRAQSERQAINSVCQGSAADLVKAAMIS 2673

Query: 548  LVYMKKDKNN 557
            L    +++  
Sbjct: 2674 LTRRIREEGW 2683


>gi|66817246|ref|XP_642487.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
 gi|60470570|gb|EAL68549.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
          Length = 516

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 85/550 (15%), Positives = 168/550 (30%), Gaps = 137/550 (24%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           + L   S  E ++  +   +   G   +  +  +  + V  +   L+ + + L  G V S
Sbjct: 16  QSLFIFSEIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVLLPGKVFS 75

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-----------------------TTCQRVLSSNKKL 269
               E +   LF +  + + ++ +                       +T   VL      
Sbjct: 76  LSSTEDISQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLEHISHH 135

Query: 270 TPQAIQVFNNRMRASR-----SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            P    +   R            + K     +  N   R+  T+Q      TGR S    
Sbjct: 136 HPLPGLIIEIRKLTHHITHYVDILGKYEYHSDRFNM-RRIYSTIQQTVVP-TGRISMAFP 193

Query: 325 PPQNL--PRPSRSHEELDQIITHLPTSITSDP-------------DPLQIISDC------ 363
             QN+  P   R       + +        D              + L+I S C      
Sbjct: 194 NLQNISHPIEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFTKVS 253

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFNVAP 421
           +R+    + G  L+ AD + +E R+L   + +   ++ F      D++     +   V  
Sbjct: 254 LRNSFTCANGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSGVDY 313

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +V+ ++R   K +   + Y  G  +    AS   ++               + E  +N 
Sbjct: 314 EKVSDEERNFAKHLVYGILYGMGINSI---ASELKVDKEKAKV---------QLERFKNT 361

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            R + +     +IED                  + +  L+  +       I + K +   
Sbjct: 362 YRTLIDFLE--SIEDRVF-------------IDAYIKTLFGRIRN--FSAIHDPKTL--- 401

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                        +D+G          ++  R          ++
Sbjct: 402 ----------------------------PKDIGK--------IKRGAR---------NSV 416

Query: 602 VQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654
            Q  + DI    M+N             +VL +HDE++ E P TD + +A ++   M + 
Sbjct: 417 PQGTAADITKLAMINIQSQFDQLSINVHMVLQLHDELLFEVPLTDIDQSAKIIKESMENV 476

Query: 655 PSWAKGLPLK 664
                 LP+K
Sbjct: 477 VKLNVPLPIK 486


>gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans]
 gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans]
          Length = 967

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 85/488 (17%), Positives = 154/488 (31%), Gaps = 99/488 (20%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  +      +   G+         L Q +     KL+ ++    +G   +    + +
Sbjct: 561 DIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYE-QHGSRFNLGSSQAV 619

Query: 240 KTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
              L    GLH +     TT ++VL      +P +  +   R  +   A   +  L+E  
Sbjct: 620 AKVL----GLHRKARGRVTTSRQVLEKLN--SPISHLILGYRKLSCLLAKS-IQPLMECC 672

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            +D R+ G      A  TGR S      QN+ +     E   Q+ +         P    
Sbjct: 673 QAD-RIHGQSITYTA--TGRISMTEPNLQNVAK-----EFCIQVGSDAVNISCRSP---- 720

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                    +   E + L+ AD   +E R+LA M+ ++  L+   + +DL++   A    
Sbjct: 721 --------FMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNK 772

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           +  ++VT D R   K +   + Y  G    + +A +   +              +++ +A
Sbjct: 773 IKESEVTPDLRNSTKQVCYGIVYGMG---MRSLAESLNCSEQEA------RIISDQFHEA 823

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
               R         A    F+ T   R ++     +S +  L     QA   TI+   A 
Sbjct: 824 YKGIRDYTRRVVNFARGKGFVETITGR-RRYLEMTNSDMEHLKKAERQAVNSTIQGSAAD 882

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
           IA+                                       N   +       Y  KL 
Sbjct: 883 IAK---------------------------------------NAILKMEKNIERYREKLA 903

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657
                                   D+V+ +HDE++ E P       + +  + M S    
Sbjct: 904 ------------------LGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK- 944

Query: 658 AKGLPLKA 665
              +PLK 
Sbjct: 945 -LSVPLKV 951


>gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu
          Length = 864

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 87/519 (16%), Positives = 169/519 (32%), Gaps = 61/519 (11%)

Query: 68  IVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
           +V  N+  F RTVL+           W      A   GL      V   L   S      
Sbjct: 315 VVCFNAKDFVRTVLQLYGEDG----SWKHV---ADFVGLD---PRVAAWLIDPSDTAPSF 364

Query: 127 KELIARFC------KGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLEPLS 179
           ++L+A+        K  +      RN  +      L        D+    + +   +   
Sbjct: 365 EDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFC 424

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           + E  L  +   + +    VD       + ++     +L+QE   +  G         +L
Sbjct: 425 TLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVA-GEQFLIMSNNQL 483

Query: 240 KTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +  LF +  LHL    +           +T + +L+S + L P    +   R      + 
Sbjct: 484 REILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKST 543

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---PRPSRSHEELDQIITH 345
                 + A    G +  T    G + TGR S      Q +   P               
Sbjct: 544 --FIDGLLAYMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEE 600

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             T                R+  ++SEG   + AD + IE R+LA ++G+   LK F+  
Sbjct: 601 TVTISP-------------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQES 647

Query: 406 E--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           E  D++ T  ++  ++   +VT   R   K +  ++ Y  G    +++A+  G+ +    
Sbjct: 648 ERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEAT 704

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
           H +      E +       +   +          ++ +   R ++   +  ++  +L  +
Sbjct: 705 HFL------ERFLQKYKKIKDFAQTVIGQCHSAGYVTSILGR-RRPLPRICAQDQQLRAQ 757

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             +     +  G A    K   + +         L   L
Sbjct: 758 AERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARL 796



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           Q  R      +    +VQ  + D+    M+  + A          +V  +HDE++ E  D
Sbjct: 752 QQLRAQAER-QAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVED 810

Query: 639 T--DEFNASMLYHLMT 652
           T   EF A+++  +M 
Sbjct: 811 TQVPEF-AALVRRIME 825


>gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus]
 gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 87/519 (16%), Positives = 169/519 (32%), Gaps = 61/519 (11%)

Query: 68  IVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
           +V  N+  F RTVL+           W      A   GL      V   L   S      
Sbjct: 317 VVCFNAKDFVRTVLQLYGEDG----SWKHV---ADFVGLD---PRVAAWLIDPSDTAPSF 366

Query: 127 KELIARFC------KGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLEPLS 179
           ++L+A+        K  +      RN  +      L        D+    + +   +   
Sbjct: 367 EDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFC 426

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           + E  L  +   + +    VD       + ++     +L+QE   +  G         +L
Sbjct: 427 TLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVA-GEQFLIMSNNQL 485

Query: 240 KTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +  LF +  LHL    +           +T + +L+S + L P    +   R      + 
Sbjct: 486 REILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKST 545

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---PRPSRSHEELDQIITH 345
                 + A    G +  T    G + TGR S      Q +   P               
Sbjct: 546 --FIDGLLAYMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEE 602

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             T                R+  ++SEG   + AD + IE R+LA ++G+   LK F+  
Sbjct: 603 TVTISP-------------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQES 649

Query: 406 E--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           E  D++ T  ++  ++   +VT   R   K +  ++ Y  G    +++A+  G+ +    
Sbjct: 650 ERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEAT 706

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
           H +      E +       +   +          ++ +   R ++   +  ++  +L  +
Sbjct: 707 HFL------ERFLQKYKKIKDFAQTVIGQCHSAGYVTSILGR-RRPLPRICAQDQQLRAQ 759

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             +     +  G A    K   + +         L   L
Sbjct: 760 AERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARL 798



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           Q  R      +    +VQ  + D+    M+  + A          +V  +HDE++ E  D
Sbjct: 754 QQLRAQAER-QAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVED 812

Query: 639 T--DEFNASMLYHLMT 652
           T   EF A+++  +M 
Sbjct: 813 TQVPEF-AALVRRIME 827


>gi|3063700|emb|CAA18591.1| putative protein [Arabidopsis thaliana]
 gi|7270174|emb|CAB79987.1| putative protein [Arabidopsis thaliana]
          Length = 1548

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 90/567 (15%), Positives = 164/567 (28%), Gaps = 131/567 (23%)

Query: 123  MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---------- 172
             +E K+ ++       +     RN     +  R+    C   V  TR +           
Sbjct: 1064 DKEVKKRLSPEAAEAANRSGRWRN-----QIRRVAHNGCCRRVAQTRALCSALWKILVSE 1118

Query: 173  KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            + L+ L++ E  L  +   +   G  +D+        I+  +   L+++   L  G+  S
Sbjct: 1119 ELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKAFELA-GMTFS 1177

Query: 233  SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL-KL 291
                  +   LF +  L + +              KL P   +   + +R S   +    
Sbjct: 1178 LHNPADIANVLFGQLKLPIPENQSKG---------KLHPSTDKHCLDLLRYSEWLIAFPY 1228

Query: 292  NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                  +  D RL    + L AS                       E++  +      ++
Sbjct: 1229 IAFCFFIIKDNRL---FELLSASVEH--------------------EVEFKLDKNGRDVS 1265

Query: 352  SDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLY 409
            SD D  +I +   R   +   E   L+ AD + IE R++A  + +   +        D++
Sbjct: 1266 SDADRYKINA---RDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVF 1322

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
                A+    A   V+   R   K +   + Y  GA    +    T           K  
Sbjct: 1323 TMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMGANRLAEQLECTSDEAKE-----KIR 1377

Query: 470  SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
            S    +    ++         E           C R+       +            A  
Sbjct: 1378 SFKSSFPAVTSWLNETISFCQEKG-------WGCYRLFPLLFVLN------------AVL 1418

Query: 530  QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                N              +Y++  K          R L     GN +        +  R
Sbjct: 1419 CVPLNHI-----------FIYIQTLKG-------RRRFLSKIKFGNAKEK-----SKAQR 1455

Query: 590  EYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------------------GYDIVL 626
            +         ++ Q  + DI+   M+N   A                          I+L
Sbjct: 1456 Q------AVNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKGRCRILL 1509

Query: 627  TVHDEIVCET-PDTDEFNASMLYHLMT 652
             VHDE+V E  P   +  A +L   M 
Sbjct: 1510 QVHDELVLEVDPSYVKLAAMLLQTSME 1536


>gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
            T ++  R  TYG KL ENIVQA SRD+LAE M      G  +V+ +HDE V + P    
Sbjct: 1   NTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAPFNR- 59

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 60  -SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 92


>gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 103

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 1  MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
          M  + ID +T S +++TKCG  KYAE  +  ++LF    D  PV ++D      +P+ + 
Sbjct: 2  MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61

Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           AL + +VT  A N+ FER  L      +   +RW
Sbjct: 62 AALSDENVTKWAFNASFERVCLSNWLKKNC--NRW 94


>gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
 gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 89/239 (37%), Gaps = 5/239 (2%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC----VRSCVIASEGKKLVVADLAGIEARVL 389
           R    L  +         ++P+  Q+ S+     +R+C + + G +L+VAD A IE RV 
Sbjct: 317 RIRCRLHPLAADSGRFSCTEPNLQQVPSEYTAPGLRACFVPAPGHRLIVADYAQIELRVA 376

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A        F  G D +  T A        +V   +R + K +     +  GA+ F+
Sbjct: 377 AHLAPCDALGAVFRAGRDPHRATAATLTGKPEPEVESHERKLAKAVNFGFLFGMGARRFR 436

Query: 450 KMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             A++  GL+L+         +    +     + R +         E + + TA  R K 
Sbjct: 437 SYAASGYGLDLDERQAAEAREAFFRTFPGIAAWHRRVGALSRRGDHEAITVTTAMGRRKT 496

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
               + S  + L   +     +  +     + R+   +    +    +  +  +P  R+
Sbjct: 497 FPAGRFSFNAALNIPVQGTAAEGFKAAMIRLHRELPSIGGRGVLVVHDEYLAEVPEARA 555



 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 9/94 (9%)

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT-----ENIVQAVSRDILAEGMMNATK 619
            R +       +   +  TT    R+    G+ +        VQ  + +     M+   +
Sbjct: 470 HRRVGALSRRGDHEAITVTTAMGRRKTFPAGRFSFNAALNIPVQGTAAEGFKAAMIRLHR 529

Query: 620 AGYDI----VLTVHDEIVCETPDTDEFNASMLYH 649
               I    VL VHDE + E P+        +  
Sbjct: 530 ELPSIGGRGVLVVHDEYLAEVPEARAEEGKAMVE 563


>gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
 gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
          Length = 643

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 123/344 (35%), Gaps = 36/344 (10%)

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
           +E  +  L   ++  G   D ++       ++V   KL++E ++L    V       ++ 
Sbjct: 203 QELPVARLLTLMSVTGAPFDHSIMQRWRSDLEVTVAKLEREAQALVKKEVLM-TSPAQVA 261

Query: 241 TWLFLETGL--HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS--RSAVLKLNTLVE 296
             L+ + GL       + +T   VLS      P    +  +R  A    + V  + +L E
Sbjct: 262 ALLYDDLGLQPPAGRRSRSTGDEVLSMMVDQHPVVSIIRKHRQVAKLITTYVDTIRSLPE 321

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           +    G L       G S +  + G            R +   +Q +T      +S+P+ 
Sbjct: 322 SSPKPGLLEYFRPQNGVSESCNFLGKN----------RLYTVWNQTMTVTGRLSSSNPNL 371

Query: 357 LQIISD---------CVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-T 404
             I             +R   I+   +   LV  D   +E RVLA   G     ++F   
Sbjct: 372 QNIPRSHEFEDLGVISLRKAFISPILDSHCLVSVDYRQVEIRVLAHFVGPGALRRSFSVD 431

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D+Y    A     A   VTK++R   KV  LAL Y  G      +A   G+       
Sbjct: 432 GADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVYGSG---IHLLARQMGVTTTVAQG 488

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +  +    + + E +   +       A    ++ T C+R +K
Sbjct: 489 FKRQFNYA--FPELERWMVRVWHA----AKGKKYVETICKRRRK 526


>gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
            T ++  R  TYG KL ENIVQA SRD+LA  M     AG  +V+ +HDE V + P    
Sbjct: 1   NTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTDR- 59

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +   +  +MT  P WA GL L A G+    Y+K
Sbjct: 60  -SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 92


>gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 95/612 (15%), Positives = 164/612 (26%), Gaps = 192/612 (31%)

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------------QELW-------- 186
           R AW  +  +   D   T  + K LE L  +                  + +        
Sbjct: 77  RSAWIDYSAF---DAEATWHVRKELESLLREMFWTSESLNGALSELSMWDFYRRYYRDFG 133

Query: 187 YLDQTINDRGYCVDV-----ALAHTLNQIVDVERTKLD--QELESLTYGLVSSSRCLEKL 239
            L   +  RG  VDV      +       ++  R +       E  +  L  +     ++
Sbjct: 134 QLLVNMERRGIHVDVARHLPEIEREARAALEKARNQFKSWAVAEGGSDLLFMNVHSTAQI 193

Query: 240 KTWLFL------ETGLH-------------LEDLTETTCQRVL---------------SS 265
           +  LF         GL              +E   +   +                    
Sbjct: 194 QQLLFAPGFRGGRAGLPREREFSVENTTGFVEPGKKKPLKNRTILIRGLGIPPISFTEKG 253

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             +     IQ    ++        +     EA+    R +     L A         +  
Sbjct: 254 LPQCNAATIQELAGKIDEENVEKSEFGKAFEALGGGDRGKAACLALNALSRVNSIETMLN 313

Query: 326 PQNLPRPS------RSHEELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGK 374
              LP  S      R H  L+ + T      + +P+     +       +R   +A  G 
Sbjct: 314 TFILPLQSVADAEQRVHCSLN-LNTETGRLSSRNPNLQNQPALEKDVYFIRKAFMAKPGN 372

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD------- 427
            L+V+D   +E RVLA M   +  ++AF  G D +  T    ++     + K        
Sbjct: 373 ILLVSDYGQLELRVLAHMTKCKAMIEAFRLGGDFHSRTALSMYDYIKEDIAKGTCLLEWD 432

Query: 428 -----------------QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                            +R   K++  +L Y   A   Q      G++L           
Sbjct: 433 SSKGEPPAPLLKHKYASERRQAKILNFSLAYGKTAHGLQ---KDFGVSLEEAKE------ 483

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                              V   W ++   V   W EL      
Sbjct: 484 -----------------------------------VLAKWYKERPEVKR-WQEL------ 501

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN-RSYLNTTTRQLTR 589
           TI+  K     +                   LP   S      G+  R+ +NT       
Sbjct: 502 TIQTAKETGFTRTLMGR-----------YRPLPDINSKNKWKEGHACRAAINTP------ 544

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+   K       G++++L +HDE++ E P  +   
Sbjct: 545 ------------IQGGAADIVMMAMLKIEKDERLRRLGFEMLLQIHDEVILEGPIENVAE 592

Query: 644 ASM-LYHLMTSN 654
           A   L   M   
Sbjct: 593 AKKCLVEDMMHP 604


>gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster]
 gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster]
          Length = 2059

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 152/477 (31%), Gaps = 97/477 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G+         L Q +     K++ ++    +G   +    + +
Sbjct: 1652 DIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYE-QHGSRFNLGSSQAV 1710

Query: 240  KTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L    GLH +     TT ++VL      +P +  +   R  +   A   +  L+E  
Sbjct: 1711 AKVL----GLHRKAKGRVTTSRQVLEKLN--SPISHLILGYRKLSGLLAKS-IQPLMECC 1763

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             +D R+ G      A  TGR S      QN+ +     E   Q+ + +       P    
Sbjct: 1764 QAD-RIHGQSITYTA--TGRISMTEPNLQNVAK-----EFSIQVGSDVVHISCRSPFMPT 1815

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S C            L+ AD   +E R+LA M+ ++  L+  ++ +DL++   A    
Sbjct: 1816 DESRC------------LLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNK 1863

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            +  ++VT+D R   K +   + Y  G    + +A +   +              +++  A
Sbjct: 1864 IEESEVTQDLRNSTKQVCYGIVYGMG---MRSLAESLNCSEQEA------RMISDQFHQA 1914

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH-QAFEQTIENGKA 537
                R         A    F+ T   R ++     +S V  L N+   QA   TI+   A
Sbjct: 1915 YKGIRDYTTRVVNFARSKGFVETITGR-RRYLENINSDVEHLKNQAERQAVNSTIQGSAA 1973

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
             IA+                                       N   +       Y  KL
Sbjct: 1974 DIAK---------------------------------------NAILKMEKNIERYREKL 1994

Query: 598  TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654
                                     D+V+ +HDE++ E P       + +  L   N
Sbjct: 1995 A------------------LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMEN 2033


>gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster]
          Length = 2059

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 152/477 (31%), Gaps = 97/477 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G+         L Q +     K++ ++    +G   +    + +
Sbjct: 1652 DIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYE-QHGSRFNLGSSQAV 1710

Query: 240  KTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L    GLH +     TT ++VL      +P +  +   R  +   A   +  L+E  
Sbjct: 1711 AKVL----GLHRKAKGRVTTSRQVLEKLN--SPISHLILGYRKLSGLLAKS-IQPLMECC 1763

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             +D R+ G      A  TGR S      QN+ +     E   Q+ + +       P    
Sbjct: 1764 QAD-RIHGQSITYTA--TGRISMTEPNLQNVAK-----EFSIQVGSDVVHISCRSPFMPT 1815

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S C            L+ AD   +E R+LA M+ ++  L+  ++ +DL++   A    
Sbjct: 1816 DESRC------------LLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNK 1863

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            +  ++VT+D R   K +   + Y  G    + +A +   +              +++  A
Sbjct: 1864 IEESEVTQDLRNSTKQVCYGIVYGMG---MRSLAESLNCSEQEA------RMISDQFHQA 1914

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH-QAFEQTIENGKA 537
                R         A    F+ T   R ++     +S V  L N+   QA   TI+   A
Sbjct: 1915 YKGIRDYTTRVVNFAHSKGFVETITGR-RRYLENINSDVEHLKNQAERQAVNSTIQGSAA 1973

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
             IA+                                       N   +       Y  KL
Sbjct: 1974 DIAK---------------------------------------NAILKMEKNIERYREKL 1994

Query: 598  TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654
                                     D+V+ +HDE++ E P       + +  L   N
Sbjct: 1995 A------------------LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMEN 2033


>gi|242083352|ref|XP_002442101.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
 gi|241942794|gb|EES15939.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
          Length = 917

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/517 (15%), Positives = 162/517 (31%), Gaps = 90/517 (17%)

Query: 161 CKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           C      TR ++  L+ L ++         E  L  +   +   G   D+        I+
Sbjct: 440 CCRRSAQTRALYTVLKKLLTQNLSDLVETIEAPLVNVLADMELWGIGADMDACLHARHII 499

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET------GLHLEDLTETTCQRVLSS 265
             +  +L++E   L  G   S      +   L++        G     L  +T ++ L  
Sbjct: 500 TKKLKELEKEAYRLA-GKNFSLNATADIADILYVHLKLPVPKGCEKGKLHPSTDKQSLDH 558

Query: 266 NKKLTPQAIQVFNNRMRASRS--AVLKLNTLVEAMNSDGR--LRGTLQFLGASRTGRWSG 321
            +   P    +  +R  A      +  + +  +      R  + G      ++ TGR S 
Sbjct: 559 LRDQHPIIPVIKEHRTLAKLLNGTLWSICSRAQLCTQSQRYIIHGNW-LQTSTATGRLSM 617

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                Q          E D   ++    ++ D          VR   I   E    V AD
Sbjct: 618 EEPNLQ----CVEHLVEFDTGKSNKDYCMSVDDHHKIN----VRDFFIPTKENWLFVTAD 669

Query: 381 LAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
            + IE R++A  + +   ++       D++    +R  +   A ++  +R   K +   +
Sbjct: 670 YSQIELRLMAHFSKDPTLVELLSKPDGDVFTMIASRWADKEEALISSKERENTKRLIYGI 729

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  GA +  +      L  +T     K  S    +    ++   +  +  +    +  +
Sbjct: 730 LYGMGANSLAEQ-----LECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLL 784

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
           G      ++   +  +  S+   +  +    +I  G A    K   + L           
Sbjct: 785 GR-----RRFLTKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAMIRL----------- 828

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY-GGKLTENIVQAVSRDILAEGMMNAT 618
                        V  NR+    +T ++TR+++  GG+                      
Sbjct: 829 -----------HSVITNRTRATDSTDEVTRKFSEFGGQ---------------------- 855

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654
                ++L VHDE+V E        A  L  + M   
Sbjct: 856 ---CHLILQVHDELVLEVVPCMVAQAGRLLQICMEEA 889


>gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus]
          Length = 169

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           DP+ LQ I   +RS   A EGK LV++D + IE R+ +   G++  ++AF+ G DL+  T
Sbjct: 1   DPN-LQNIPRELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYT 59

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +        +V+K++R + K +   L Y   AK   + A + G++L+        +   
Sbjct: 60  ASILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKIRDKFF 119

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
           E +   +N+   ++    E      +     + V   +   
Sbjct: 120 EYFVSFKNWHEKVKRELKEFKESRGYTLLGRKYVAHTFPDA 160


>gi|183231230|ref|XP_653960.2| DNA-directed DNA polymerase [Entamoeba histolytica HM-1:IMSS]
 gi|169802582|gb|EAL48574.2| DNA-directed DNA polymerase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 657

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 140/422 (33%), Gaps = 42/422 (9%)

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND-RGYCVDVALA 204
           NK    E  +        +V V       ++    +E  +  +   +N    + +D  L 
Sbjct: 216 NKSTIEERLKQTRRLAVKEVEVMNN-DNMIKVFQEQEMIIDGVLIEMNYCNEFKIDNKLL 274

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL-ETGLHLEDLTETTCQRVL 263
           +   + +  E+ K++ E + +  G   +    E++K  L     G+       TT +++L
Sbjct: 275 NEQRKKLIEEQHKIEMETKKII-GRTINLSSPEQVKKELIRFNIGIDGIKKKATTDKKIL 333

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR---LRGTLQFLGASRTGRWS 320
           S  +   P A  V   R + S+     +  + +     G    +R T     A  TGR  
Sbjct: 334 S--QSDHPFAKLVLEYR-KISKLLSGVIEQIRKCCIKSGDEYFIRTTWSQT-AIVTGRIQ 389

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 Q +P+                    S P  L I     R   I       V  D
Sbjct: 390 SKSPNLQQIPK-----------------QSFSLPQCLIIP----RDLFITHNNNTFVAID 428

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
              IE R+LA    +   ++ F++  D++    A         +T D+R   K +     
Sbjct: 429 YNQIELRILADFTKDHHLIEFFKSNTDVHRLIAAHWLKKNVNDITDDERRKAKTIVYGCI 488

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y  G  +    A    ++L+     +++       +    F +W +E    +A    F+ 
Sbjct: 489 YGIGPFSL---ADQLHVSLDESKAFLES-----FLDQFPAFKKWKEETI-TNASTTGFVH 539

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           T   R ++          +   E  +    +   G A    K   +  ++ K   + + +
Sbjct: 540 TINNRRRRINNLTDCNDKKTVAESKRIAVNSPIQGTAADIIKMCMI-EIFKKLHSSWVGV 598

Query: 561 ML 562
            L
Sbjct: 599 QL 600



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT--DEFNASMLY 648
              + +Q  + DI+   M+   K       G  ++L +HDEIV E PD   DE   + L 
Sbjct: 567 AVNSPIQGTAADIIKMCMIEIFKKLHSSWVGVQLLLNIHDEIVLEVPDHLLDEVCVT-LK 625

Query: 649 HLMT 652
           HLM 
Sbjct: 626 HLME 629


>gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi]
 gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi]
          Length = 2235

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/490 (17%), Positives = 162/490 (33%), Gaps = 102/490 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G+        TL Q +     KL+ ++  L +G   +    + +
Sbjct: 1828 ELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYEL-HGSRFNLGSTQAV 1886

Query: 240  KTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L    GLH +     +T +++L      +P +  + N R  +   +  K    +   
Sbjct: 1887 AKVL----GLHRKANGRISTSRQILEKLD--SPMSQLILNYRKLSMLLS--KNMQPLLKC 1938

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                R+ G      A  TGR S      QN+ +         Q+                
Sbjct: 1939 CQANRVHGQSITYTA--TGRISMSEPNLQNVAKDFEI-----QLGAEKINISC------- 1984

Query: 359  IISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                  RS     +GK+ L+ AD   +E R+LA ++ +Q  LK   + +DL+    A   
Sbjct: 1985 ------RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWN 2038

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             +  ++V++  R   K +   + Y  G    + +A +          +       E++  
Sbjct: 2039 KIPESEVSEQLRNGTKQICYGIVYGMG---MRSLAESLKCTEQEAQMI------SEQFHL 2089

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH-QAFEQTIENGK 536
            A    +       + A  + ++ T   R ++     +S   ++ N+   QA   TI+   
Sbjct: 2090 AYAGIKAYAMKVVKFARNNGYVETITGR-RRYLDHINSGEPQIKNQAERQAINSTIQGSA 2148

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            A IA+                L +          +++G  R  L                
Sbjct: 2149 ADIAK-------------SAILRME---------KNIGRYREKLG--------------- 2171

Query: 597  LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
            L EN V                    ++VL +HDE++ E P       + +  L M +  
Sbjct: 2172 LAENAV--------------------NLVLHLHDELIFEVPVDKAKKVAKVLSLTMENCV 2211

Query: 656  SWAKGLPLKA 665
                 +PL+ 
Sbjct: 2212 K--LSVPLRV 2219


>gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi]
 gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi]
          Length = 2218

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/490 (17%), Positives = 162/490 (33%), Gaps = 102/490 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G+        TL Q +     KL+ ++  L +G   +    + +
Sbjct: 1811 ELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYEL-HGSRFNLGSTQAV 1869

Query: 240  KTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L    GLH +     +T +++L      +P +  + N R  +   +  K    +   
Sbjct: 1870 AKVL----GLHRKANGRISTSRQILEKLD--SPMSQLILNYRKLSMLLS--KNMQPLLKC 1921

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                R+ G      A  TGR S      QN+ +         Q+                
Sbjct: 1922 CQANRVHGQSITYTA--TGRISMSEPNLQNVAKDFEI-----QLGAEKINISC------- 1967

Query: 359  IISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                  RS     +GK+ L+ AD   +E R+LA ++ +Q  LK   + +DL+    A   
Sbjct: 1968 ------RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWN 2021

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             +  ++V++  R   K +   + Y  G    + +A +          +       E++  
Sbjct: 2022 KIPESEVSEQLRNGTKQICYGIVYGMG---MRSLAESLKCTEQEAQMI------SEQFHL 2072

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH-QAFEQTIENGK 536
            A    +       + A  + ++ T   R ++     +S   ++ N+   QA   TI+   
Sbjct: 2073 AYAGIKAYAMKVVKFARNNGYVETITGR-RRYLDHINSGEPQIKNQAERQAINSTIQGSA 2131

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            A IA+                L +          +++G  R  L                
Sbjct: 2132 ADIAK-------------SAILRME---------KNIGRYREKLG--------------- 2154

Query: 597  LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
            L EN V                    ++VL +HDE++ E P       + +  L M +  
Sbjct: 2155 LAENAV--------------------NLVLHLHDELIFEVPVDKAKKVAKVLSLTMENCV 2194

Query: 656  SWAKGLPLKA 665
                 +PL+ 
Sbjct: 2195 K--LSVPLRV 2202


>gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           QR   K +   L Y   A     +A    +        +      E +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMSAF---GLARQLNIPRKEAQKYMD--LYFERYPGVPEYMERTR 114


>gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi]
          Length = 287

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 9/185 (4%)

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEG 373
           +         P     + ++ H   +Q+ T      +  P+  QI     +R   I SE 
Sbjct: 3   KLYSAFYLKLPLHINKQTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQQNIREIFIPSEN 62

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
              ++AD   IE ++ A +  ++  LKA+    DL+  T +        ++ K+ R + K
Sbjct: 63  NIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGIDEINKEDRHVAK 122

Query: 434 VMELALGYQGGAKAFQKMASTT---GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
            +   L Y       +  A+T     +NL+              +E  +   RW      
Sbjct: 123 AINFGLLYGMNYVNLRTYANTYYNVKMNLDQC-----LYFYNSFFEHYKGLSRWHNSVKQ 177

Query: 491 EHAIE 495
             A+E
Sbjct: 178 TRALE 182



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 596 KLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHL 650
           K     VQ    DIL   ++   K        I+L VHDEI+ E      E    +L   
Sbjct: 200 KALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALKILVES 259

Query: 651 MT 652
           M 
Sbjct: 260 ME 261


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 93/546 (17%), Positives = 163/546 (29%), Gaps = 117/546 (21%)

Query: 36  GFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW- 93
             D   + L DC          L+      D   +AHN+ F+   L+     +I    W 
Sbjct: 44  ARDRDTIVLIDCFQLDKGDWADLRWFFSTPDRFWLAHNAVFDLGWLQEH---NIYPAGWV 100

Query: 94  ICTLVLAR--SNGLPSALKAVGEALKLSSQK-----------------------MEEGKE 128
            C+++ +R  +NGLP++   +   +K   +K                         +   
Sbjct: 101 RCSMLASRLLTNGLPNSKHGLDSVVKRYLKKELSKEQQRSDWSGDLSEEQLEYAANDVAA 160

Query: 129 LI-------------------ARFCKGETHECLYDRN-KPNHREAWRLFGEYCKGDV--- 165
           L+                      C+         R   P + E  +      + D+   
Sbjct: 161 LMELDPILEHRISRDRLGPAFKLECRALPAMAQMWRTGLPWNAENLQQRKVDYEYDITQL 220

Query: 166 --TVTREIFKRLE-----PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
                  + K L      P    EQ + YL   + + G   D A      ++  +E +  
Sbjct: 221 KQDFLMLLDKALPEEHKLPRERDEQRISYLKDKVTEMG-HYDKAYEKWYAELESLENSTT 279

Query: 219 DQELESLTYGL--------VSSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKK 268
                     +          +    ++L   L +  G    D     +  ++ L S   
Sbjct: 280 FNTRSKDEGSIRLGTKKYAGFNINSPKQLVEKLTVILGEPPRDANGKPSASRQALRSYAA 339

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
              + IQ++    R  +   + + ++ E M+  G +R +   LGA               
Sbjct: 340 DH-EVIQIYLEWKRCEKRRQM-IESIQEKMDGTGFVRASYMQLGA--------------- 382

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEAR 387
                                    P+  QI  D   RSCV A EG  LV AD   +E R
Sbjct: 383 ----------------ESGRMSCIKPNNQQIPRDKQFRSCVEAPEGWLLVDADFGQMELR 426

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           + A +A ++  + AF+ GED +  T                R   K     L Y  GA  
Sbjct: 427 LAAAVADDERMIAAFQAGEDPHTVTAKAI---------GCDRQTAKSANFGLLYGSGATG 477

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            +  A   G+ +         N     ++      +W ++N  E      +   A     
Sbjct: 478 LRNYAGGMGITMTQERAADIRNEWLGVFQ---GVAKWQRDNAKEADETQDYKWAATRVPI 534

Query: 508 KAWRQK 513
              R+ 
Sbjct: 535 SGMRRY 540


>gi|255087648|ref|XP_002505747.1| predicted protein [Micromonas sp. RCC299]
 gi|226521017|gb|ACO67005.1| predicted protein [Micromonas sp. RCC299]
          Length = 953

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 91/602 (15%), Positives = 173/602 (28%), Gaps = 113/602 (18%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L      +V H     R + KA  ++D      + T  +A       A +    A+    
Sbjct: 386 LCRPRPVVVHHAQAVTRELAKARVHVDPHALEVMDTRCMAWLAAPDDAHEGGIAAVTSRF 445

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175
             + +G         G T    +DR       +  + G   + D+  +  + +RL     
Sbjct: 446 NGVNDG-------SGGATTTNAFDRVGAGDETSDDVLGGL-RADILASASLAQRLRATAG 497

Query: 176 --EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ-ELESLTYGLVSS 232
               +   E ++      +   G   D +        +  +   +++    ++  G   +
Sbjct: 498 LDPNVVRTEGKVAAALGQMEHVGLGFDPSAVRAAVGDLRRKLAGIEESAAAAMPDGARVN 557

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               +++   L+    L                            +N  + +++A L   
Sbjct: 558 LASPQQVAEALYGTLKLPPPS------------------------SNAQQGAKTAQLTTK 593

Query: 293 TLVEAMNSDGRLRGT----LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                   D RL       L++   S+T              R  R   + +   T    
Sbjct: 594 DDALRSLRDKRLHPLPGLVLEYRAVSKTIAMCNSYASM---ARGKRLRCDWNNTRTATGR 650

Query: 349 SITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +++P+   +  D      +R    A  GK L+ AD + IE R+LA +AG++  +    
Sbjct: 651 LSSTNPNIQAVGKDETGEFSLRRAFSAPPGKVLLAADYSQIELRMLAHLAGDRGLVALLR 710

Query: 404 ----TGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
                G D++   +       P   V K+ R   K     L Y  G      +A   G  
Sbjct: 711 RQITDGGDVFERIWNAGRGAPPETPVAKEDRDRAKRTVYGLLYGQGK---TGLAEKLGCT 767

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +    L+        +  A    R       E A  +  +     R +       +   
Sbjct: 768 GDVAQGLINA------FFRAFPGVRAFVTRTKERARVEKRVVLPSGRHRPLPGFASADQR 821

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E      +A    I+   A + +       + M +    L    P G             
Sbjct: 822 ERAGAERKAVNSLIQGSAADLMK-------IAMCR---WLAAASPVG------------- 858

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
           +  TTT       T                        A      +V  +HDE++ E  D
Sbjct: 859 FEPTTTEHADVAST------------------------AATLPARLVAQIHDELLFECED 894

Query: 639 TD 640
           + 
Sbjct: 895 SP 896


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 122/420 (29%), Gaps = 82/420 (19%)

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
           L   + +ET    VL                   A  +A+    +L E + +   +    
Sbjct: 586 LETTEGSETQVPSVLKDVDT-------------SAYGTALKAFPSLEEGIEACHAIASLC 632

Query: 309 QFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362
           +                  N+  +  R H  L+ I T         P+            
Sbjct: 633 EVCSIDSLISNFILPLQGSNVSGKRGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRY 691

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   IA+ G  L+VAD   +E R+LA +A  +  L+AF+ G D +  T    +     
Sbjct: 692 KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIHE 751

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            V K +                     +     G        L     +        NF 
Sbjct: 752 AVDKGE------------------VLLEWDPQPGEEKPPVPLLKDAFGSERRKAKMLNFS 793

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               +     A +        +     W ++   V + W E  +  ++  E+G+      
Sbjct: 794 IAYGKTPVGLARDWKVSIEEAKETVNLWYRERQEVLK-WQEARK--KEAREDGRVHTLLG 850

Query: 543 RRDVPLVYMKKDKNNLILMLPSG-RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           R  V                PS   +   +     R+ +NT                   
Sbjct: 851 RARV---------------FPSISHASNAQKRHIERAAINTP------------------ 877

Query: 602 VQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN 654
           VQ  + D+    M+         + G+ ++L +HDE++ E P      A  +    M+  
Sbjct: 878 VQGSAADVAMCAMLQISRNKRLKELGWKLLLQIHDEVILEGPTESAVVAKDIVIECMSKP 937



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 98/303 (32%), Gaps = 88/303 (29%)

Query: 32  LFAFGFDDHP------------VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
           +  F     P            V++ D      +    K   EN ++  V HN  F++ V
Sbjct: 229 IICFSIYSGPEADFGNGTSCIWVDVLD-GGGRDLLVKFKPFFENPEIKKVWHNYSFDKHV 287

Query: 80  LKACFNLDIPIHRWICTLVL-------ARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
           ++   N ++P+  +    +        +R      +L+A+    ++ S      + LI +
Sbjct: 288 IQ---NYEVPVCGFHADTMHMARLWNSSRRTEGGYSLEALTGDKRVMSGAQSCFEGLIGK 344

Query: 133 ------FCKGETHECLYDRN----------KPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                 F K +  +   +            +   RE W  +      D   T ++++ L+
Sbjct: 345 VSMKTIFGKNKLKKDGSEGKMITVAPVEELQREEREPWICYS---ALDAISTWQLYESLK 401

Query: 177 P-----------------LSSKEQELW----YLDQTINDRGYCVDVALAHTLNQIVDVER 215
                             +    +E W     L   +   G  VD A    + ++  VE+
Sbjct: 402 RKLFHMPWNLNGKPVGKSMLDFYKEYWRPFGELLVRMETEGILVDRAYLAEIEKVAKVEQ 461

Query: 216 TKL----------------------DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
                                    D +L  L +G +++S+  +   + L +E  + + +
Sbjct: 462 EIAVNRFRNWACKYCPDAKYMNVGSDTQLRQLFFGGIANSKDPD---SILPVEKKIKVPN 518

Query: 254 LTE 256
           + +
Sbjct: 519 VDK 521


>gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29]
          Length = 478

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 108/276 (39%), Gaps = 51/276 (18%)

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++LK+ L    G+ LE +++      LS      P  +Q++ N  +A +   + 
Sbjct: 138 FNLNSPQQLKSKLSAVLGVKLESVSKNA----LSEFAGHHP-VVQMYLNWKKAEKRRQM- 191

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + ++ E M  DG ++ +   LGA                                     
Sbjct: 192 ITSIQEKMRPDGFVKASYMQLGA-------------------------------ETGRMT 220

Query: 351 TSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
             +P+  QI  D   R CV A +G  +V AD   +E R+ A +A ++  ++AF+ GEDL+
Sbjct: 221 CFNPNNQQIPKDKQFRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFKDGEDLH 280

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T          +     R I K     L Y  GAK  +  A+ + +++ T     K  
Sbjct: 281 TVTA---------EAIGCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM-TLEEAQKVR 330

Query: 470 SAPEEWEDAENFCRW-MQENHPEHAIEDLFIGTACE 504
           S  + +++ E   +W  +EN   +     F G  C 
Sbjct: 331 S--DWFQEFEGIAKWHKKENDKANNPNPRFKGKKCG 364


>gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 361

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 109/311 (35%), Gaps = 39/311 (12%)

Query: 341 QIITHLPTSITSDPDPLQII--SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           ++  + P +++S P P+     + C+R+     +G  ++ AD + +E R+LA +A ++  
Sbjct: 57  RVGAYTPLTMSSGPTPMPGPKFAVCIRNVFCPFKGGLMLAADYSQLELRLLAHLAKDRCL 116

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +    +G D++    A+  +V    VT +QR   K M   + Y  GA+A        G+ 
Sbjct: 117 MSILNSGSDVFKQIAAKWKHVDVDSVTAEQRQQAKQMCYGMIYGIGARAL---GEQLGVC 173

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A  +++     +++  +N+   + +   E        G      ++     H    
Sbjct: 174 EEDAAAFMESF--KSQYKGMKNYLLEVVKQCREKGYVQTLTGR-----RRYLPAIHHTNP 226

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              N+  +    T   G A    K   V +         L +  P+ +           S
Sbjct: 227 GARNQAERQAVNTTVQGSAADLVKTAMVKI------DRRLAVEYPATKRSHKHKE-EEES 279

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                 R+  R  T                         T  G  +VL +HDE++ E   
Sbjct: 280 GTAPGRRKSRRLQT--------------------STTGFTPPGAFLVLQLHDELIYEVRR 319

Query: 639 TDEFNASMLYH 649
            D    + L  
Sbjct: 320 EDVDQVAQLIK 330


>gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           QR   K +   L Y   A     +A    +        +      E +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMSAF---GLARQLNIPRKEAQKYMD--LYFERYPGVLQYMERTR 114


>gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli]
 gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli]
 gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli]
 gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli]
 gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli]
 gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli]
 gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli]
 gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli]
 gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli]
 gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli]
 gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli]
 gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli]
 gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli]
 gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli]
 gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli]
 gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli]
 gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli]
 gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli]
 gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli]
 gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli]
 gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli]
 gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli]
 gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli]
 gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli]
 gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli]
 gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli]
 gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli]
 gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli]
 gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli]
 gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli]
 gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli]
 gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli]
 gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli]
 gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli]
 gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli]
 gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli]
 gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli]
 gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli]
 gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli]
 gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli]
 gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli]
 gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli]
 gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli]
 gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli]
 gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli]
 gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli]
 gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli]
 gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli]
 gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli]
 gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli]
 gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli]
 gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli]
 gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli]
 gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli]
 gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli]
 gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli]
 gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli]
 gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli]
 gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli]
 gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli]
 gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli]
 gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli]
 gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli]
 gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli]
 gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli]
 gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli]
 gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli]
 gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           QR   K +   L Y   A     +A    +        +      E +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMSAF---GLARQLNIPRKEAQKYMD--LYFERYPGVLEYMERTR 114


>gi|255071395|ref|XP_002507779.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
 gi|226523054|gb|ACO69037.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
          Length = 1974

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 81/533 (15%), Positives = 147/533 (27%), Gaps = 124/533 (23%)

Query: 178  LSSKEQELWYLDQTINDRGYCVD----VALAHTLNQIVDVERTKLDQELESLTYGLV--S 231
            L   E  L      +   G   D           N+ +     + D  +     G     
Sbjct: 1480 LRDAEMRLVPALAQMEATGVAFDPSVLCRQMRQANRRLREIEREADALVSKQVPGAEPAF 1539

Query: 232  SSRCLEKLKTWLFLETGLHLE----------DLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
            S      +   LF    L                      VL++ K  +     V  +R 
Sbjct: 1540 SLASSADVARVLFENLKLPPPPCAVVQCGNGRRRLRANAEVLAALKDQSDLPALVLEHRT 1599

Query: 282  RAS-----------RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
             +                 + +    +     RLRG +     + TGR +      Q +P
Sbjct: 1600 LSRCVAMADEMVELALGGARRDEGNSSRGKITRLRGAIHQTN-TETGRLAMEEPNLQTVP 1658

Query: 331  RPSRSHEELDQIITHLPTS------------ITSDPDPLQIISD----CVRSCVIASEGK 374
            +P            +                 T +P P   +       VR+  +A  G 
Sbjct: 1659 KP----RTFRMADAYDGRPGIIAPEGSAKAHKTREPSPGTEVGSEETLSVRNAFVAPPGA 1714

Query: 375  KLVVADLAGIEARVLAWMAGEQWKLKAFETGE--------DLYVTTYARSFNVAPAQVTK 426
             L+ AD   +E RV+A M+G++  ++AF            D +    +R   V   +V+ 
Sbjct: 1715 VLLSADYRQLELRVMAHMSGDEGLVRAFNHEGAPPHHPDADPFRFLASRWRGVEVGKVSD 1774

Query: 427  DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
              RA+ K +   + Y  G   F   A   G+  +     ++   A       E + + + 
Sbjct: 1775 ADRAVAKQLAYGVLYGSGPARF---AQEMGVTESEARVQIEAFKAS--VPGVERWRKKLI 1829

Query: 487  ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
            E     +     + T C R                    +    ++    A+ A    D 
Sbjct: 1830 ETASRASPPS--VETICGR--------------------RRILSSLAPDAALTATGCEDA 1867

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                               R        + R  +NT                    Q  +
Sbjct: 1868 K------------------RRFRLDRSADERRAVNTA------------------CQGSA 1891

Query: 607  RDILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN 654
             D++   M+        +    VL +HDE++ E   +    A+  +  +M   
Sbjct: 1892 ADVVKRAMIAVFDELDPSLATPVLQIHDELLFEVDASRVVEAARAVRAIMERA 1944


>gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis]
          Length = 2242

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 120/365 (32%), Gaps = 47/365 (12%)

Query: 175  LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            L      E     +   +  RG+ ++V     L  ++  +  ++++E      G   +  
Sbjct: 1897 LSAYKDIEMPTILILANMELRGFGINVESLQELATVIKNDLGRIEEEAFR-AAGRKFNFY 1955

Query: 235  CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              +++   L L      +     T +  L S +        +     + +      +  L
Sbjct: 1956 SSKEVSQVLGLN-----KRGRACTNKNALKSCENP---ISNLVTLWRKLTTVQTKIVFPL 2007

Query: 295  VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            ++    + R+ G       + TGR S      Q +PR  +S                   
Sbjct: 2008 LQLERKNNRIHGNCITY--TVTGRVSMHEPNLQTIPRDFKSD------------------ 2047

Query: 355  DPLQIISDCV---RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                 IS C+   R   + + G  ++ AD   +E R+LA  + +    K      D++ +
Sbjct: 2048 -----ISGCILSVRMAFVPASGNIMLSADFCQLELRILAHFSQDPVLCKLLHGKGDIFKS 2102

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              AR       QV  D R   K +  A+ Y  GA   + +A T     +     ++    
Sbjct: 2103 IAARLNKTTEEQVDDDMRQRAKQLCYAMIYGMGA---KSLAETLSATESEAKDYLEAFMG 2159

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                       R       E A  + F+ T   R ++     +S++S + ++  +    T
Sbjct: 2160 ------TYKGIRVWLTGVCEQARVEGFVSTIANR-RRILPGINSKISAVKSQAERQAVNT 2212

Query: 532  IENGK 536
               G 
Sbjct: 2213 KVQGS 2217


>gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
 gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
          Length = 608

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 151/465 (32%), Gaps = 49/465 (10%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ETR+   L   G   +  D  + L   G     V       DP     +   L +
Sbjct: 40  LGLDVETRA---LPDTGPRHFGPDAGLRLVQLGT--ATVAWVLDPLDPAQRAAIAAVLGD 94

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK-LSSQK 122
                V H + F+   + +   + +   R   T ++++        +  G  LK L+++ 
Sbjct: 95  PGRRFVTH-TSFDTLAVWSALAIGLG-QRVADTHLISKLVDPD---ERAGHGLKTLTARH 149

Query: 123 MEEGKEL--------IARFCKGETHECLY--DRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           +++G  L        +                    +       +  Y +  + V  ++ 
Sbjct: 150 LDDGLTLAQTALYARMRALAPPGERAGERWKTWGWAHLPADDEAYVVYVRRLLPVLLDLC 209

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                L   EQ L      I  RG  +D+         V+ +       +E+      +S
Sbjct: 210 GPFSHLVPVEQWLAAQSVGITIRGLALDLPYTRAYLAQVEADHHAAAALIEAELGCPPTS 269

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            R  +    WL  +          T   R+  +   LT  A  +   R+    +   ++ 
Sbjct: 270 PRFAD----WLDTQH----VPGPRTATGRLQVTADTLTALARDLDTGRL----TVSDQVR 317

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            ++ A    GR+  T   +  +    +     P        R H +++ +         +
Sbjct: 318 RMLTAR---GRVAATSNTI--ANLRSFLAAADPA------GRVHPQINTLRAKTGRMSIT 366

Query: 353 DPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P    +      +R C  A  G  L+  D + +E RV A ++ +        +G D++ 
Sbjct: 367 GPALQTLKKGDPRLRHCFQADPGHVLISCDFSQVEVRVTAALSRDPALTDVLASGVDIHD 426

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            T    F       TKDQR + K       Y GGA+A       T
Sbjct: 427 ATARLLFG---DGFTKDQRTLAKRATFGTIYGGGARALMNATGAT 468


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 102/739 (13%), Positives = 191/739 (25%), Gaps = 188/739 (25%)

Query: 42   VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-- 99
            V++ D   D +M        E+  +  V HN  F+  V++   N  I +  +    +   
Sbjct: 331  VDVLDGGRDVLM--EFAPFFEDPSIRKVWHNYSFDSHVIE---NYGIKVAGFHADTMHLA 385

Query: 100  -----ARSNGLPSALKAVGEALKL----SSQKMEEGKELIA-----RFCKGETHECLYDR 145
                 +R      +L+ +    ++      +  + GK  +      +  K +        
Sbjct: 386  RLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIIS 445

Query: 146  NKP------NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------------- 183
             +P      + RE W  +      D   T  +++ L+    K+                 
Sbjct: 446  MEPVEVLQRDDREMWICYSSL---DSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYE 502

Query: 184  ELW----YLDQTINDRGYCVDVALAHTL---------NQIVDVERTKL------------ 218
            E W     L   +   G  VD      +                +               
Sbjct: 503  EYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVN 562

Query: 219  -DQELESLTYGLVSS----------------SRC---------------------LEKLK 240
             D ++  L +G + +                                        +E LK
Sbjct: 563  SDTQIRQLFFGGIENRCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYRTIELFSIVEDLK 622

Query: 241  TWLFLETGLHLEDLT---------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            T LF  +G                 T         +       ++  + +  + S     
Sbjct: 623  TDLFTASGWPSVSGDALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTASYGTAY 682

Query: 292  NTLVEAMNSDGRLRGTLQFLGASRTGRWSGC-VFPPQNLPRP---SRSHEELDQIITHLP 347
                                            + P Q         R H  L+ I T   
Sbjct: 683  EAFGGGKKGKEACHAIAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLN-INTETG 741

Query: 348  TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                  P+             +R   +A+ G  L+VAD   +E R+LA +A  +  L AF
Sbjct: 742  RLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAF 801

Query: 403  ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            + G D +  T    +      V +      KV               +     G      
Sbjct: 802  KAGGDFHSRTAMNMYQHIRDAVEEK-----KV-------------LLEWHPQPGQEKPPV 843

Query: 463  AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              L     A        NF     +     A +        +   K W +    V   W 
Sbjct: 844  PLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDRKEVLA-WQ 902

Query: 523  ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
               +   Q       ++ R RR   + +    +                     R+ +N 
Sbjct: 903  MKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRG----------------HIERAAINA 946

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636
                               VQ  + D+    M+   +       G+ ++L VHDE++ E 
Sbjct: 947  P------------------VQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEG 988

Query: 637  P-DTDEFNASMLYHLMTSN 654
            P ++ +   S++   M+  
Sbjct: 989  PTESADLAKSIVVECMSKP 1007


>gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1]
 gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1]
          Length = 618

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 102/517 (19%), Positives = 168/517 (32%), Gaps = 76/517 (14%)

Query: 9   ETRSPI--DLTKCGICKYAEDVC-VILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-T 64
           ETR+P+  D   CG+  YA     + L  FG ++         H P   +    AL    
Sbjct: 36  ETRTPVAVDTETCGLKIYAWGPGFLRLAQFG-NETEAWALPIEHGPEYVEAAAWALRVLP 94

Query: 65  DVTIVAHN-SYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKA-VGEALK--- 117
           D+T   HN S F+  V      + + +   +   T +LA+       ++  +G  LK   
Sbjct: 95  DLT--GHNWSGFDALVSDEHLGVPLEVTCAKVTDTQILAKLVDPRQQMEGGIGSGLKANS 152

Query: 118 ---LSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     +    L A F          + +   +H      + EY   DV +T  +  
Sbjct: 153 ARYIDPTAPDTQDGLKAVFKSLKLKITEGFAKIPLDHP----TYLEYGLLDVILTSRLRP 208

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           RLE   +K          E  +  +   +   G  +D      L   +  +  +  +   
Sbjct: 209 RLEATLAKLGVPKTLAVYEHRVARICAQMVRAGLVLDEEYTTGLQSDLAYDADRYSEVAL 268

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT----------PQA 273
                 V+S+R +      L                + VL +   L           P  
Sbjct: 269 GYGVESVNSARQVSAALLDLGETLTEKTASGALKVDKAVLMALADLDRDWKPIRSREPNV 328

Query: 274 IQVFNNR-MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           +     R  RA +      +  +E +++ GR+   +Q + A RT R S      Q     
Sbjct: 329 LADAVLRSKRAGKWRSAYADNFLENVDAQGRIHPNVQSMQA-RTFRMSVTQPAVQ----- 382

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                          T  +SD          +R  ++A  G+ +V  D   +E RVLA +
Sbjct: 383 ---------------TLPSSD--------KMIRRALLADPGEVMVSVDFQAVELRVLAAL 419

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A  +    A   GEDL+  T    F       T   R + K +     Y GGA    +  
Sbjct: 420 ADVKRMKAAIAAGEDLHSFTARLVFG---DGFTDKDRKVSKGIAFGKVYGGGAATVSRQT 476

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
               L     A        PE    A+++      NH
Sbjct: 477 G-APLGAVQRAMAKYDQVYPEVGRAAKDWRIEAFNNH 512



 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDTDEFNA 644
           L R+ +Y   +T  +VQ+ +RD L + +++  +AG    + L +HDE++   P  +   A
Sbjct: 525 LDRDRSYA--ITNYLVQSTARDCLGQALIHMDEAGLVPYLRLPIHDEVLASVPKAE---A 579

Query: 645 SMLYHLMTSNPSWAK-GLPLKAEGYESKR 672
             +   +    +++  G+P++A+    KR
Sbjct: 580 EEISRAIAKAMTFSLRGVPIEADAEIGKR 608


>gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli]
 gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            I  E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +
Sbjct: 1   FIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           QR   K +   L Y   A     +A    +        +      E +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMSAF---GLARQLNIPRKEAQKYMD--LYFERYPGVLEYMERTR 114


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 102/739 (13%), Positives = 191/739 (25%), Gaps = 188/739 (25%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-- 99
           V++ D   D +M        E+  +  V HN  F+  V++   N  I +  +    +   
Sbjct: 184 VDVLDGGRDVLM--EFAPFFEDPSIRKVWHNYSFDSHVIE---NYGIKVAGFHADTMHLA 238

Query: 100 -----ARSNGLPSALKAVGEALKL----SSQKMEEGKELIA-----RFCKGETHECLYDR 145
                +R      +L+ +    ++      +  + GK  +      +  K +        
Sbjct: 239 RLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIIS 298

Query: 146 NKP------NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------------- 183
            +P      + RE W  +      D   T  +++ L+    K+                 
Sbjct: 299 MEPVEVLQRDDREMWICYSSL---DSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYE 355

Query: 184 ELW----YLDQTINDRGYCVDVALAHTL---------NQIVDVERTKL------------ 218
           E W     L   +   G  VD      +                +               
Sbjct: 356 EYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVN 415

Query: 219 -DQELESLTYGLVSS----------------SRC---------------------LEKLK 240
            D ++  L +G + +                                        +E LK
Sbjct: 416 SDTQIRQLFFGGIENRCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYCTIELFSIVEDLK 475

Query: 241 TWLFLETGLHLEDLT---------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           T LF  +G                 T         +       ++  + +  + S     
Sbjct: 476 TDLFTASGWPSVSGDALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTASYGTAY 535

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGC-VFPPQNLPRP---SRSHEELDQIITHLP 347
                                           + P Q         R H  L+ I T   
Sbjct: 536 EAFGGGKKGKEACHAIAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLN-INTETG 594

Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                 P+             +R   +A+ G  L+VAD   +E R+LA +A  +  L AF
Sbjct: 595 RLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAF 654

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G D +  T    +      V +      KV               +     G      
Sbjct: 655 KAGGDFHSRTAMNMYQHIRDAVEEK-----KV-------------LLEWHPQPGQEKPPV 696

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
             L     A        NF     +     A +        +   K W +    V   W 
Sbjct: 697 PLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDRKEVLA-WQ 755

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +   Q       ++ R RR   + +    +                     R+ +N 
Sbjct: 756 MKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRG----------------HIERAAINA 799

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636
                              VQ  + D+    M+   +       G+ ++L VHDE++ E 
Sbjct: 800 P------------------VQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEG 841

Query: 637 P-DTDEFNASMLYHLMTSN 654
           P ++ +   S++   M+  
Sbjct: 842 PTESADLAKSIVVECMSKP 860


>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
 gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
          Length = 992

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 110/716 (15%), Positives = 212/716 (29%), Gaps = 163/716 (22%)

Query: 37  FDDHPVELW-DCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           F +    +W D +     P VL E     E++ +  V HN  F+  V++   N  I +  
Sbjct: 317 FGNGKTCIWVDVLDGG--PDVLMEFAPFFEDSSIRKVWHNYSFDSHVIE---NYGIKVAG 371

Query: 93  WICTLVL-------ARSNGLPSALKAVGEALKL----SSQKMEEGKELI-----ARFCKG 136
           +    +        +R      +L+ +    ++    S +  + GK  +      +  K 
Sbjct: 372 FHADTMHLARLWDSSRRTDGGYSLEGLTNDHRVMGVVSKELRKIGKRSMKTIFGRKKIKK 431

Query: 137 ETHECLYDRNKP------NHREAWRLFGEYCKGDVTVTREIFKRLE------PLS----- 179
           +  E      +P        RE W  +      D   T ++++ L+      P +     
Sbjct: 432 DGSEGKITAIEPVEILQREDRELWICYSSL---DSMSTLKLYESLKSKLERKPWTFDGCP 488

Query: 180 -----SKEQELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                   +E W     +   +   G  VD A    + ++   +R     +  +      
Sbjct: 489 RGSLYDFYEEYWRPFGAILVKMETAGMLVDRAYLSEIEKVAVAQRKLAADKFRNWASKYC 548

Query: 231 S-----SSRCLEKLKTWLFL--ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                 +     +++   F   E      D    +    + +++    +  +V   R   
Sbjct: 549 PDAKYMNVNSDTQIRQLFFGGIENICKPGDFLPKSKAIKVPNDETAVSEGKKVPKYRTIE 608

Query: 284 SRSAVLKLNTLV------EAMNSD------GRLRGTLQFLGASRTGRWSGCVFPPQN--L 329
             + V  L T +       +++ D      G++   L +     T    G      N  L
Sbjct: 609 LFNIVEDLKTDIFTASGWPSVSGDALRNLAGKVPSDLVY----STDDECGSHSEISNCDL 664

Query: 330 PRPSRSHEELDQI------------------ITHLPTSITSDPDPLQIISDC------VR 365
              S      D                    I  + + I++   PLQ           +R
Sbjct: 665 EDTSSYGTAYDAFGGGKEGKEACHAIAALCEICSIDSLISNFILPLQNQPALEKDRYKIR 724

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              +A+ G  L+VAD   +E R+LA +A  +  L AF  G D +  T    +      V 
Sbjct: 725 QAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFRAGGDFHSRTAMNMYPHIREAVD 784

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           ++     KV+              +     G        L     A        NF    
Sbjct: 785 EE-----KVI-------------LEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAY 826

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +     A +        +   K W      V   W    +           ++ R RR 
Sbjct: 827 GKTPHGLARDWKVSVKEAKDTLKLWYSDRKEVLA-WQMKQKQLAHEKSEVYTLLGRSRRF 885

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
             + +    +                     R+ +N                    VQ  
Sbjct: 886 PNMAHATSGQRG----------------HIERAAINAP------------------VQGS 911

Query: 606 SRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
           + D+    M+   +       G+ ++L VHDE++ E P ++ E   S++   M+  
Sbjct: 912 AADVAMCAMLEIDRNTRLKELGWTLLLQVHDEVILEGPSESAELAKSIVVECMSKP 967


>gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta]
 gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta]
          Length = 2037

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/482 (16%), Positives = 153/482 (31%), Gaps = 93/482 (19%)

Query: 173  KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            + L+     E  L      +   G+     L   L Q +     KL+ ++    +G   +
Sbjct: 1623 QLLKFFHDLEMPLQLTLCHMEFVGFPAQQQLLQQLYQKMVAVVRKLETKIFE-QHGSRFN 1681

Query: 233  SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                + +   L L       +   TT ++VL      TP +  +   R  A   A   + 
Sbjct: 1682 LGSSQAVAKVLGLH---RKINGRVTTSRQVLEKLN--TPISHMILGYRKLAGLLAKS-IQ 1735

Query: 293  TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             L++   +D R+ G      A  TGR S      QN+ +     E   Q+ +        
Sbjct: 1736 PLLKCCQAD-RIHGQSITYTA--TGRISMAEPNLQNVAK-----EFCIQVGSDAVNISCR 1787

Query: 353  DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
             P  L+             E + L+ AD   +E R+LA ++ ++  LK   + +DL++  
Sbjct: 1788 LPFMLK------------DEDRCLLSADFCQLEMRILAHLSQDKGLLKVMNSSQDLFIAI 1835

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             A    +  ++V+++ R   K +   + Y  G    + +A +   +              
Sbjct: 1836 AAHWNKIEESEVSQNLRNSTKQVCYGIVYGMG---MRSLAESLNCSEEEA------RLIS 1886

Query: 473  EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
            E++  A    R       + A    F+ T   R ++     +S    L N+  +    + 
Sbjct: 1887 EQFHQAYTGIREYTMRVVKFARNQGFVETITGR-RRYLDNINSDQEHLKNQAERQAINST 1945

Query: 533  ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
              G A                                       +S +    + L R   
Sbjct: 1946 IQGSA-----------------------------------ADIAKSAILKMEKNLER--- 1967

Query: 593  YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMT 652
            Y  KL                         D+V+ +HDE++ E P       + +  +  
Sbjct: 1968 YRDKL------------------GLGDKSVDLVMHLHDELIFEVPAAKSKKIAKVLSVTM 2009

Query: 653  SN 654
             N
Sbjct: 2010 QN 2011


>gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera]
          Length = 1864

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 150/487 (30%), Gaps = 83/487 (17%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E ++  L   +   G  V +     L+ ++  E   L++   +L  G   +    +++
Sbjct: 1443 DIEMKIIILLAYMELTGLGVCLKSLQDLSSVIREEMISLEERAYALC-GKKFNFSSSKEV 1501

Query: 240  KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
               L L  G     + +    +         P +  V + R      + +    L+    
Sbjct: 1502 GEILGLYKG-KKISVNKAVLGQ------SDHPISNLVMSWRKLNVTKSKIIYP-LLNLAQ 1553

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
               R+ G    + ++ TGR S      QN+PR                     D +    
Sbjct: 1554 HSSRIHG--NCVTSTLTGRISMHEPNLQNVPR---------------------DFNSKDN 1590

Query: 360  -ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              +  VR   I + G  ++ AD   +E R+LA  + +           D++    A+  +
Sbjct: 1591 SFTISVRMAFIPTVGNIILSADYCQLELRILAHFSKDTILCNIMRKPGDIFKNIAAKWNH 1650

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            V+  +V    R   K +   + Y  G K   +  S   +    F                
Sbjct: 1651 VSENEVDDKMRRHTKQLCYGMIYGMGVKTLAENLSVDEVKAKEFLE--------SFMNAY 1702

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                +W+  N  E A  + +I T  ER ++ +    S      ++  +    T   G A 
Sbjct: 1703 PGISKWL-NNVLEEARINGYITTILER-RRMFPGLTSINPMEKSQAERQAVNTKVQGSAA 1760

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
               K+  + +    + +      LP   +   R + +N                      
Sbjct: 1761 DIVKKAMIDIEKRMRFE--FSTSLPIMPANSSRKLRSNS--------------------- 1797

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSW 657
                                  G  +VL +HDE++ E    D    A+++   M      
Sbjct: 1798 ----------------KETQHKGGYLVLQLHDELLYEVNIYDLRQVATIVKESMEQVCQL 1841

Query: 658  AKGLPLK 664
               LP+K
Sbjct: 1842 TVPLPVK 1848


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 102/336 (30%), Gaps = 66/336 (19%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
            +  R H  L+ I T         P+             +R   IA+ G  L+VAD   +E
Sbjct: 812  KNGRIHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLE 870

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
             R+LA +A  +  L AF+ G D +  T    +      V K +                 
Sbjct: 871  LRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKRE----------------- 913

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +     G +      L     +        NF     +     A +          
Sbjct: 914  -VLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARE 972

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
              + W ++   V   W E  +    T++    ++ R R    + +    +          
Sbjct: 973  TVERWYKERKEVLA-WQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRG-------- 1023

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATK 619
                       R+ +NT                   VQ  + D+    M+         +
Sbjct: 1024 --------HIERAAINTP------------------VQGSAADVAMCAMLEISRNARLKE 1057

Query: 620  AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
             G+ ++L VHDE++ E P ++ E   +++   M   
Sbjct: 1058 LGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEKP 1093



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 78/271 (28%), Gaps = 62/271 (22%)

Query: 32  LFAFGFDDHP------------VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
           +  F     P            V++ D      +        E+  +  V HN  F+  V
Sbjct: 381 IICFSIYSGPEADFGNGKSCIWVDVLD-GGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHV 439

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK--------LSSQKMEEGKELI- 130
           ++   N D+ +  +    +        S     G +L+        +S   M  G+ELI 
Sbjct: 440 IE---NYDLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIG 496

Query: 131 ---------ARFCKGETHECLYDRNKP---NHREAWRLFGEYCKGDVTVTREIFKRLE-P 177
                     +  K +  E       P     RE  + +  Y   D   T ++++ ++  
Sbjct: 497 KVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMKNK 556

Query: 178 LSSKEQ---------------ELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           L  KE                + W     L   +   G  VD A    + ++   E    
Sbjct: 557 LLDKEWLLDGARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAEEQVA 616

Query: 219 DQELESLTYGLVS-----SSRCLEKLKTWLF 244
                +            +     +L+  LF
Sbjct: 617 ANRFRNWASKHCPDAKYMNVGSDTQLRQLLF 647


>gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1034

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 102/336 (30%), Gaps = 66/336 (19%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
            +  R H  L+ I T         P+             +R   IA+ G  L+VAD   +E
Sbjct: 728  KNGRIHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLE 786

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
             R+LA +A  +  L AF+ G D +  T    +      V K +                 
Sbjct: 787  LRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKRE----------------- 829

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +     G +      L     +        NF     +     A +          
Sbjct: 830  -VLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARE 888

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
              + W ++   V   W E  +    T++    ++ R R    + +    +          
Sbjct: 889  TVERWYKERKEVLA-WQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRG-------- 939

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATK 619
                       R+ +NT                   VQ  + D+    M+         +
Sbjct: 940  --------HIERAAINTP------------------VQGSAADVAMCAMLEISRNARLKE 973

Query: 620  AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
             G+ ++L VHDE++ E P ++ E   +++   M   
Sbjct: 974  LGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEKP 1009



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 78/271 (28%), Gaps = 62/271 (22%)

Query: 32  LFAFGFDDHP------------VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
           +  F     P            V++ D      +        E+  +  V HN  F+  V
Sbjct: 297 IICFSIYSGPEADFGNGKSCIWVDVLD-GGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHV 355

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK--------LSSQKMEEGKELI- 130
           ++   N D+ +  +    +        S     G +L+        +S   M  G+ELI 
Sbjct: 356 IE---NYDLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIG 412

Query: 131 ---------ARFCKGETHECLYDRNKP---NHREAWRLFGEYCKGDVTVTREIFKRLE-P 177
                     +  K +  E       P     RE  + +  Y   D   T ++++ ++  
Sbjct: 413 KVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMKNK 472

Query: 178 LSSKEQ---------------ELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           L  KE                + W     L   +   G  VD A    + ++   E    
Sbjct: 473 LLDKEWLLDGARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAEEQVA 532

Query: 219 DQELESLTYGLVS-----SSRCLEKLKTWLF 244
                +            +     +L+  LF
Sbjct: 533 ANRFRNWASKHCPDAKYMNVGSDTQLRQLLF 563


>gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C]
 gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C]
          Length = 1023

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 94/583 (16%), Positives = 156/583 (26%), Gaps = 185/583 (31%)

Query: 160 YCKGDVTVTREIFKRLEPLSS---KEQELWY--------LDQTINDRGYCVDVALAHTLN 208
           Y  GDV     I+  L        K  ELW             I   G  +D   A  + 
Sbjct: 449 YASGDVDCCLRIYNVLYKRIEEHPKMLELWLGFYPRLTATLAHIEASGVLLDSEYAELVE 508

Query: 209 QIVDVERTKLDQELESL---------------------TYGLVSSSRCLEKLKTW----- 242
            I   E  +L  E+  L                     T  +      + +L+       
Sbjct: 509 NIYTEEEHRLLNEIRKLPEVKEVEDEHMMFYKEGLKEMTKPVKDRDASVARLRDKYKITD 568

Query: 243 ------------------LFLETGLHLE----DLTE-----------------TTCQRVL 263
                             LF   GL L      + +                  T +  L
Sbjct: 569 SENKVHFKPSSSEHKGRLLFKVMGLTLPYDKESIKKETFDNGVPEHQLTWRDYKTDKHAL 628

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRW 319
           +   +  P+A  V    +  S+   LK N   +    A N DG + G+    G   T R 
Sbjct: 629 AYIAENYPEAKHVAELLLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYNSTGTEST-RL 687

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      Q L                         D    I    R+     EG  ++  
Sbjct: 688 SANNPNMQQL---------------SSKVGDPRRFDYKYPIKRLFRTRF---EGGGMLQL 729

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + +E R+L  +A ++   +AF  GED++  T +  + +    V KD R   K +   +
Sbjct: 730 DYSALEMRILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRAKSVNFGI 789

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y     +    A   G+ +                                        
Sbjct: 790 AYGESPFSI---APKLGVTVEEA------------------------------------- 809

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               ER+ + +      + +   E HQ  ++                            +
Sbjct: 810 ----ERIFEEYFASKPSIKQFIEETHQFAQRY-------------------------GYV 840

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM----- 614
             L   R L+      ++   N   R          K    I+Q     +    M     
Sbjct: 841 ETLQGHRRLLRDSFSKDKKVFNGAMR----------KSVNTIIQGTGAYLTNLSMVYIDE 890

Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP 655
            +        IV+TVHD +V + P  +    + +   +M + P
Sbjct: 891 YIRKHNKRSRIVITVHDSLVIDCPRDEVDEMAKVAKYIMENLP 933


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 106/336 (31%), Gaps = 68/336 (20%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
            +  R H  L+ I T         P+             +R   +AS G  LVVAD   +E
Sbjct: 745  KDGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQLE 803

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
             R+LA + G +  ++AF+ G D +  T    +      V   Q                 
Sbjct: 804  LRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQ----------------- 846

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +     G +      L     +        NF     +     + +        + 
Sbjct: 847  -VILEWHPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQE 905

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                W      V + W E+ +  ++ IE+G  +    R                   P+ 
Sbjct: 906  TVDLWYNDRQEVRK-WQEMRK--KEAIEDGYVLTLLGRS---------------RRFPAS 947

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATK 619
            +S   R+    R+ +NT                   VQ  + D+    M+         K
Sbjct: 948  KSRAQRN-HIQRAAINTP------------------VQGSAADVAMCAMLEISINQQLKK 988

Query: 620  AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
             G+ ++L +HDE++ E P ++ E    ++   M+  
Sbjct: 989  LGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKP 1024



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 96/326 (29%), Gaps = 75/326 (23%)

Query: 32  LFAFG--------FDDHPVELWDCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVL 80
           L  F         F +    +W  V      +VL E     E++ +  V HN  F+  ++
Sbjct: 312 LICFSIYCGPEADFGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHII 371

Query: 81  KACFNLDIPIHRWICTLVL-------ARSNGLPSALKAVG---EALKLSSQKMEE---GK 127
           +   N  I I  +    +        AR      +L+A+    + L  +  K E    GK
Sbjct: 372 R---NHGIEISGFHADTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGK 428

Query: 128 ELI-----ARFCKGETHECLYDRNKP------NHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +      R  K +  E       P        REAW  +      D   T ++++ + 
Sbjct: 429 ISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDREAWISYS---ALDAISTLKLYESMT 485

Query: 177 P------------------LSSKEQELW----YLDQTINDRGYCVDVALAHTLNQIVDVE 214
                              +     E W     L   +   G  VD      + ++   E
Sbjct: 486 KKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAE 545

Query: 215 RTKLDQELESLTYGLVS-----SSRCLEKLKTWLFLETG------LHLEDLTET-TCQRV 262
           +        +            +     +L+   F          L +E L +     +V
Sbjct: 546 QQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGISNSHDEVLPVEKLFKVPNIDKV 605

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAV 288
           +   KK   +   +  +R+  S  + 
Sbjct: 606 IEEGKKTPTKFRNIKLHRISDSPLST 631


>gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA
            polymerase [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 106/336 (31%), Gaps = 68/336 (20%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
            +  R H  L+ I T         P+             +R   +AS G  LVVAD   +E
Sbjct: 746  KDGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQLE 804

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
             R+LA + G +  ++AF+ G D +  T    +      V   Q                 
Sbjct: 805  LRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQ----------------- 847

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                +     G +      L     +        NF     +     + +        + 
Sbjct: 848  -VILEWHPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQE 906

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                W      V + W E+ +  ++ IE+G  +    R                   P+ 
Sbjct: 907  TVDLWYNDRQEVRK-WQEMRK--KEAIEDGYVLTLLGRS---------------RRFPAS 948

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATK 619
            +S   R+    R+ +NT                   VQ  + D+    M+         K
Sbjct: 949  KSRAQRN-HIQRAAINTP------------------VQGSAADVAMCAMLEISINQQLKK 989

Query: 620  AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
             G+ ++L +HDE++ E P ++ E    ++   M+  
Sbjct: 990  LGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKP 1025



 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 96/326 (29%), Gaps = 75/326 (23%)

Query: 32  LFAFG--------FDDHPVELWDCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVL 80
           L  F         F +    +W  V      +VL E     E++ +  V HN  F+  ++
Sbjct: 313 LICFSIYCGPEADFGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHII 372

Query: 81  KACFNLDIPIHRWICTLVL-------ARSNGLPSALKAVG---EALKLSSQKMEE---GK 127
           +   N  I I  +    +        AR      +L+A+    + L  +  K E    GK
Sbjct: 373 R---NHGIEISGFHADTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGK 429

Query: 128 ELI-----ARFCKGETHECLYDRNKP------NHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +      R  K +  E       P        REAW  +      D   T ++++ + 
Sbjct: 430 ISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDREAWISYS---ALDAISTLKLYESMT 486

Query: 177 P------------------LSSKEQELW----YLDQTINDRGYCVDVALAHTLNQIVDVE 214
                              +     E W     L   +   G  VD      + ++   E
Sbjct: 487 KKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAE 546

Query: 215 RTKLDQELESLTYGLVS-----SSRCLEKLKTWLFLETG------LHLEDLTET-TCQRV 262
           +        +            +     +L+   F          L +E L +     +V
Sbjct: 547 QQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGISNSHDEVLPVEKLFKVPNIDKV 606

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAV 288
           +   KK   +   +  +R+  S  + 
Sbjct: 607 IEEGKKTPTKFRNIKLHRISDSPLST 632


>gi|167392000|ref|XP_001739984.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165896117|gb|EDR23624.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 651

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/428 (14%), Positives = 135/428 (31%), Gaps = 54/428 (12%)

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND-RGYCVDVALA 204
           NK    E  +   +    +V +    +  ++    +E  +  +   +N    + +D  L 
Sbjct: 210 NKSTTEERLKQTRKLALKEVEI-MNKYNMIKVFQEQEMIIEGVLIEMNYCNEFKIDDKLL 268

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL-ETGLHLEDLTETTCQRVL 263
           +   +++  E+ K++ E + +  G   +    E++K  L     G+       TT +++L
Sbjct: 269 NEQRKVLIEEQNKIEIETKKII-GKTINLSSPEQVKKELIRYNIGIDGVKKKATTDKKIL 327

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
           S  +   P A  V   R + S+     +  +       G                     
Sbjct: 328 S--QSGHPFAKLVLEYR-KISKLLSGVIEQIRRCCIKTGD-------------------- 364

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV---------RSCVIASEGK 374
                         +  Q         + +P+  QI              R   I     
Sbjct: 365 --------EYFIRTKWSQTAITTGRIQSKNPNLQQIPKQAFSLQQFVVIPRDLFITHNNN 416

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             V  D   IE R+LA    +   ++ F++  D++    A         +T  +R   K 
Sbjct: 417 TFVAIDYNQIELRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVNDITDGERRKAKT 476

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +     Y  G  +    A    ++L+     +++       +   +F +W +E    +A 
Sbjct: 477 IVYGCIYGIGPFSL---ADQLHISLDESKTFLES-----FLDQFPSFKKW-KEEIITNAS 527

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
              F+ T   R ++      S   +   E  +    +   G A    K   +  ++ K  
Sbjct: 528 TTGFVHTINNRRRRINNLTDSSDKKTLAESKRIAVNSPIQGTAADIIKMCMI-EIFKKIH 586

Query: 555 KNNLILML 562
              L + L
Sbjct: 587 STWLGVQL 594



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT--DEFNASMLY 648
              + +Q  + DI+   M+   K       G  ++L +HDEIV E PD   DE   + L 
Sbjct: 561 AVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVPDHLLDEVCVT-LK 619

Query: 649 HLMT 652
           +LM 
Sbjct: 620 YLME 623


>gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173]
          Length = 169

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 1/145 (0%)

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           DP+ LQ I   +R    A EG   V+AD + IE R+ A   GE   +KAF+ G DL+  T
Sbjct: 1   DPN-LQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYT 59

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +         +TK++R + K +   L Y   AK   + A+T G++L             
Sbjct: 60  ASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFF 119

Query: 473 EEWEDAENFCRWMQENHPEHAIEDL 497
             +E  +++   ++E   +      
Sbjct: 120 SYFEGFKDWHNKVKEELKKTGKSSG 144


>gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus]
          Length = 900

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 142/408 (34%), Gaps = 38/408 (9%)

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             +I+   +   + E  L  +   +      V+       + ++     +L+QE   +  
Sbjct: 415 QLKIYGLWQLFCTLELPLIPILAVMESHNIQVNKDEMERTSAVLGSRLKELEQEAHFVA- 473

Query: 228 GLVSSSRCLEKLKTWLFLETGL----HLEDLTETTCQRVLSS-------NKKLTPQAIQV 276
           G         +L+  LF +  L      E L +T  Q  LS+        +   P    +
Sbjct: 474 GEQFLITSNNQLREILFGKLKLHLLRPRETLPKTGLQGHLSTSEAMLNVLQNFHPLPKII 533

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R      +       + A    G +  T    G + TGR S      Q + +     
Sbjct: 534 LEYRQVHKIKST--FVDGLLACMKKGSISSTWNQTG-TVTGRLSAKRPNIQGISKHPIQI 590

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +           +T  P          R+  ++SEG   + AD + IE R+LA ++G+ 
Sbjct: 591 TKPQNFKGKEDDILTISP----------RTMFVSSEGHTFLAADFSQIELRILAHLSGDP 640

Query: 397 WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             LK F+  E  D++ T  ++  ++    VT  +R   K +  ++ Y  G    +++A+ 
Sbjct: 641 ELLKLFQESERDDVFSTLTSQWKDIPSECVTHVEREQTKKVVYSVVYGAGK---ERLAAC 697

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+ +   A  ++     ++++  ++F +       +       +G      ++   +  
Sbjct: 698 LGVTVQEAARFLEF---LQKYKKIKDFAQATIARCHQTGYVASIMGR-----RRPLPRIR 749

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
           ++  +L  +  +     +  G A    K   + +         L   L
Sbjct: 750 AQDQQLRAQAERQAVNFVVQGSAADLCKMAMIHIFAAVATSPTLTARL 797


>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 824

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 112/738 (15%), Positives = 218/738 (29%), Gaps = 190/738 (25%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS------NGLPSA 108
           +V KE  EN +V  V HN  F+R V++    + +       T+ +AR            +
Sbjct: 114 EVFKEYFENANVKKVWHNYSFDRHVVENHHGIKLAGF-AADTMHMARLWNSNRKLDGGYS 172

Query: 109 LKA----------VGEALKLSSQKMEEGKELIARFCKGE-THECLYDRN--KP------N 149
           L+A            E L   ++ M   + +   F K +   +    +    P       
Sbjct: 173 LEALSSSADAMSECAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTMILPPIEEIQE 232

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLE-----------PLSSKE---------QELWY-- 187
            R++   + EY   D   T  + + LE           P+ + +          + +   
Sbjct: 233 ARDSRDRWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFYTFY 292

Query: 188 ------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCL 236
                 L   +   G  VD A      ++   ++   +    +          + +    
Sbjct: 293 LAEFGNLLTQMERNGLLVDKAHLAHAEKMAHEDKRVAEDYFRNWAASKCEGARIMNVGSG 352

Query: 237 EKLKTWLF--------LETGLHLE--------------------DLTETTCQRVL----- 263
            +++  LF         + G+ L                        + T +  L     
Sbjct: 353 LQVRQLLFAGAKNKRRDKPGVELTREFTQESSEWIAWDAAGREGKAPKKTMKVALHGITV 412

Query: 264 ----------SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR----GTLQ 309
                     +    ++   ++    +  A+R+ +   ++L +A  ++  L+       +
Sbjct: 413 KPIQVQTFTATGLPAVSSVVLRALAGKPGAARAIMDTWDSLADAEKTEDVLKKACGTAFE 472

Query: 310 FLGASRTGR------------------WSGCVFPPQNLPRPS---RSHEELDQIITHLPT 348
             G  + G                    S  + P Q         R H  L+ I T    
Sbjct: 473 AFGGGKEGVQACAAIDALNDVAAIDTLLSNFIIPLQGDDIRGPEGRVHGALN-INTETGR 531

Query: 349 SITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                P      +       +R    A  G  LVVAD   +E R+LA MA  +   +AFE
Sbjct: 532 LSARRPSLQNQPALEKDRYGIRKAFTAGPGNILVVADYGQLELRLLAHMADCKSMQEAFE 591

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G D +  T    ++     + K +          +  + G +        T    +  A
Sbjct: 592 AGGDFHSRTALGMYSNIKEAIDKGE----------VVLEYGEQ------EETVDEKDRPA 635

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            +    ++        NF     +     A +            + W      V E W E
Sbjct: 636 LVKDVFASERRKAKVLNFSIAYGKTAHGLAKDWGTSLEEAANTVELWYADRPEVRE-WQE 694

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           + +      +N    +  + R++P    K +                      R+ +NT 
Sbjct: 695 VQK-KMAVEKNLVRTLLGRVRNLPDASSKNEA---------------FKSHALRASINTP 738

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
                             +Q  + DI    M+   +       GY +++ +HDE++ E P
Sbjct: 739 ------------------IQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGP 780

Query: 638 DTDEFNASMLYHLMTSNP 655
           +  +  A  L      NP
Sbjct: 781 EEHKDEALALTKYHMENP 798


>gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus]
          Length = 848

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 87/519 (16%), Positives = 167/519 (32%), Gaps = 79/519 (15%)

Query: 68  IVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
           +V  N+  F RTVL+     D     W      A   GL      V   L   S      
Sbjct: 317 VVCFNAKDFVRTVLQLYGEDD----SWKHV---ADFVGLD---PRVAAWLIDPSDTAPSF 366

Query: 127 KELIARFC------KGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLEPLS 179
           ++L+A+        K  +      RN  +      L        D+    + +   +   
Sbjct: 367 EDLVAKHLEKSITVKPSSTFREASRNTLSQNVCMNLKILYDLTMDLCSKLKAYGLWQLFC 426

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           + E  L  +   + +    VD       + ++     +L+QE   +  G         +L
Sbjct: 427 TLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVA-GEQFLIMSNNQL 485

Query: 240 KTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +  LF +  LHL    +           +T + +L+S + L P    +   R        
Sbjct: 486 REILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQ------- 538

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---PRPSRSHEELDQIITH 345
                        G +  T    G + TGR S      Q +   P               
Sbjct: 539 -------------GSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEE 584

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             T                R+  ++SEG   + AD + IE R+LA ++G+   LK F+  
Sbjct: 585 TVTISP-------------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQES 631

Query: 406 E--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           E  D++ T  ++  ++   +VT   R   K +  ++ Y  G    +++A+  G+ +    
Sbjct: 632 ERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEAT 688

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
           H +      E +       +   +          ++ +   R ++   +  ++  +L  +
Sbjct: 689 HFL------ERFLQKYKKIKDFAQTVIGQCHSAGYVTSILGR-RRPLPRICAQDQQLRAQ 741

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             +     +  G A    K   + +         L   L
Sbjct: 742 AERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARL 780



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           Q  R      +    +VQ  + D+    M+  + A          +V  +HDE++ E  D
Sbjct: 736 QQLRAQAER-QAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVED 794

Query: 639 T--DEFNASMLYHLMT 652
           T   EF A+++  +M 
Sbjct: 795 TQVPEF-AALVRRIME 809


>gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni]
 gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni]
          Length = 2080

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 105/651 (16%), Positives = 206/651 (31%), Gaps = 169/651 (25%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            + L + L   ++T++ H+   +  +L+               +       +      V  
Sbjct: 1543 EELVKLLTRPELTLIMHDGKEQLKILRH-------------AMPQLVRIAIKLEDPKVAN 1589

Query: 115  ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR--------EAWRLFGEYCKG 163
             L L   K+     +  +F   CKG T  C   R   ++            R   E C  
Sbjct: 1590 WL-LQPDKVLSFHNMCQQFAPECKGLTDLCGSGRGYSSYGLDASNAILPKIRASVEAC-- 1646

Query: 164  DVTVTREIF----KRLEPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLNQI 210
               V+  I     + LE + + +   ++ D  +            G+         L+Q 
Sbjct: 1647 ---VSMHILHGQIENLERIGTGQLLKFFRDLEMPIQLSLCNMEFTGFPAKQESLQGLSQQ 1703

Query: 211  VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKL 269
            +     KL+ ++  L +G   +    + +   L    GLH +   + +T +++L      
Sbjct: 1704 MLSTMKKLEAKIYEL-HGSRFNLGSSQAVAKVL----GLHRKASGKVSTSRQILEKLD-- 1756

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            +P +  +   R     + + K    +     D R+ G  Q L  + TGR S      QN+
Sbjct: 1757 SPISQLIVGYRKL--STVLAKNVQPLLKCCQDNRVYG--QSLSYTATGRISMSEPNLQNV 1812

Query: 330  PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARV 388
             +    + + D++                 IS   RS  +  + K+ L+ AD   +E R+
Sbjct: 1813 AKDFEINLDSDKV----------------NIS--CRSAFLPMDFKRCLISADFCQLEMRI 1854

Query: 389  LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            LA ++ +   L+   +  DL+    AR  ++  ++V+++ R   K +   + Y  G    
Sbjct: 1855 LAHLSQDPALLEVMNSPRDLFTAIAARWNHMNESEVSENLRNGTKQICYGIVYGMG---M 1911

Query: 449  QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            + +A +     N    + +                                         
Sbjct: 1912 RSLAESLKCTENEAQTVSE----------------------------------------- 1930

Query: 509  AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
               Q H   + +   + +  +    NG       RR                     R L
Sbjct: 1931 ---QFHQTYAGISAYIQKVVKFARNNGYVETITGRR---------------------RYL 1966

Query: 569  VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----- 623
             + + G  +   N   RQ             + +Q  + DI    ++   K         
Sbjct: 1967 EHINSGELQIK-NQAERQ----------AINSTIQGSAADIAKSAILRMEKHLLRYRERL 2015

Query: 624  --------IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
                    +VL +HDE++ E P       + +  L M S       +PLK 
Sbjct: 2016 GITENSVNLVLHLHDELIFEVPIDKAKKIAKVLSLTMESCVK--LSVPLKV 2064


>gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K]
 gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K]
          Length = 1072

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 96/287 (33%), Gaps = 32/287 (11%)

Query: 253 DLTETTCQRVLS--SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR-LRGTLQ 309
              +      L     K    + +++                 L+  +N   R L G+  
Sbjct: 670 KTDKKAIGYALDNLELKDDVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFS 729

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             G + T R S      QNLP                  + TSD +         RS V 
Sbjct: 730 ETG-TETSRLSSSNPNLQNLP------------------AHTSDVNKFDYKHPIKRSFVS 770

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             E   L+ +D + +E R++     +   L++F  GED++  T +  +N    +VTK++R
Sbjct: 771 RFENGVLLGSDYSALEMRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEER 830

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   L +     +F   A    + ++    + +     +     +     + E  
Sbjct: 831 QATKAVNFGLAFGESPFSF---AGKNNMEVSEAEEIFE--KYFQTKPSVKTSIDNVHEFV 885

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            ++   D   G      ++  R   S   ++ NE  +    TI  G 
Sbjct: 886 QQYGYVDTMHGH-----RRFIRSAQSTDKKIKNEGLRQSFNTIIQGS 927


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 116/369 (31%), Gaps = 85/369 (23%)

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + +  DGR+  +L     + TGR S      Q                  L  S   + +
Sbjct: 470 QILGPDGRVHCSLNIN--TETGRLSARRPNLQ----------------ASLQRSSFLNIN 511

Query: 356 PLQIISDC--VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
              +  D   +R   IA  GK L+VAD   +E R+LA M+G +  L+AFE G D +  T 
Sbjct: 512 QPALEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTA 571

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              +           R   K +E        +   +          +    L     +  
Sbjct: 572 LNMY--------PHVR---KAVETGEVLLEWSGEGK----------SPVPLLKDKFGSER 610

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                 NF     +     + +        ++    W    S V E   +  +    T +
Sbjct: 611 RKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTDTIERARIT-K 669

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYLNTTTRQLTREYT 592
               ++ R R                  LP    S+        R+ +NT          
Sbjct: 670 RVHTLLGRSRH-----------------LPDINTSISVLRGHLERAAINTP--------- 703

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNAS 645
                    VQ  + D+    M+   +       G+ ++L VHDE++ E P ++ E    
Sbjct: 704 ---------VQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPSESVEEAQE 754

Query: 646 MLYHLMTSN 654
           ++   M+  
Sbjct: 755 IVVKCMSFP 763



 Score = 44.4 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 80/255 (31%), Gaps = 53/255 (20%)

Query: 37  FDDHPVELW-DCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           F      +W D ++  P +  V +   EN ++  + HN  F++ +L    N  I    + 
Sbjct: 63  FGGGKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILG---NYGIKAAGFY 119

Query: 95  CTLVLARSN------GLPSALKAVGEALKLSSQK-MEEGKELIA-RFC----KGETHECL 142
              +           GL  +L+A+    K+   + ++ GK  +   F     K +  E  
Sbjct: 120 ADTMHLARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGK 179

Query: 143 YD--------RNKPNHREAWRLFGEYCKGDVTVTREIFKRL-EPLSSKEQ---------- 183
                     +   + R+ W     Y   D   T  ++  L + L               
Sbjct: 180 LKVIPPVEELQTSKDTRDKW---IYYSAHDSVCTWHLWSSLKKKLQKASWYMEGDKRGNM 236

Query: 184 ----ELWY-----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGL 229
               EL++     +   +   G  VD      + ++   ++       +          +
Sbjct: 237 YQFYELYWRHFGDVLVQMEAEGMRVDTVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAM 296

Query: 230 VSSSRCLEKLKTWLF 244
             +     +++  LF
Sbjct: 297 YMNVCSDVQIRQILF 311


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 116/369 (31%), Gaps = 85/369 (23%)

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + +  DGR+  +L     + TGR S      Q                  L  S   + +
Sbjct: 470 QILGPDGRVHCSLNIN--TETGRLSARRPNLQ----------------ASLQRSSFLNIN 511

Query: 356 PLQIISDC--VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
              +  D   +R   IA  GK L+VAD   +E R+LA M+G +  L+AFE G D +  T 
Sbjct: 512 QPALEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTA 571

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              +           R   K +E        +   +          +    L     +  
Sbjct: 572 LNMY--------PHVR---KAVETGEVLLEWSGEGK----------SPVPLLKDKFGSER 610

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                 NF     +     + +        ++    W    S V E   +  +    T +
Sbjct: 611 RKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTDTIERARIT-K 669

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYLNTTTRQLTREYT 592
               ++ R R                  LP    S+        R+ +NT          
Sbjct: 670 RVHTLLGRSRH-----------------LPDINTSISVLRGHLERAAINTP--------- 703

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNAS 645
                    VQ  + D+    M+   +       G+ ++L VHDE++ E P ++ E    
Sbjct: 704 ---------VQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPSESVEEAQE 754

Query: 646 MLYHLMTSN 654
           ++   M+  
Sbjct: 755 IVVKCMSFP 763



 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 80/255 (31%), Gaps = 53/255 (20%)

Query: 37  FDDHPVELW-DCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           F      +W D ++  P +  V +   EN ++  + HN  F++ +L    N  I    + 
Sbjct: 63  FGGGKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILG---NYGIKAAGFY 119

Query: 95  CTLVLARSN------GLPSALKAVGEALKLSSQK-MEEGKELIA-RFC----KGETHECL 142
              +           GL  +L+A+    K+   + ++ GK  +   F     K +  E  
Sbjct: 120 ADTMHLARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGK 179

Query: 143 YD--------RNKPNHREAWRLFGEYCKGDVTVTREIFKRL-EPLSSKEQ---------- 183
                     +   + R+ W     Y   D   T  ++  L + L               
Sbjct: 180 LKVIPPVEELQTSKDTRDKW---IYYSAHDSVCTWHLWSSLKKKLLKASWYMEGDKRGNM 236

Query: 184 ----ELWY-----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGL 229
               EL++     +   +   G  VD      + ++   ++       +          +
Sbjct: 237 YQFYELYWRHFGDVLVRMEAEGMRVDTVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAM 296

Query: 230 VSSSRCLEKLKTWLF 244
             +     +++  LF
Sbjct: 297 YMNVCSDVQIRQILF 311


>gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain
           Friedlin]
 gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major]
 gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major
           strain Friedlin]
          Length = 931

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 87/234 (37%), Gaps = 23/234 (9%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           L       G + TGR S      QNLPR          I   +  +   +     ++   
Sbjct: 632 LHPNFLQEG-TDTGRLSCVEPNLQNLPRNG--------ITAAVAGNDAEEDGEEDLLG-- 680

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            R C +A++G  L+  D   IE RVLA + G+   ++A  T  D++       F   P  
Sbjct: 681 FRRCFVATDGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP-- 738

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V+ ++R + K +   L Y  G    + +A+  G+ ++   H+           +A     
Sbjct: 739 VSTEERRLAKRVVFGLLYGAGP---KTLATHMGVTVDRALHI------TSLLANAFPGID 789

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
             Q    E A  + F+ T   R+ +      S V    +   +    ++  G A
Sbjct: 790 AYQRRVIEEARTNGFVRTLSGRL-RYLPDIRSTVLSRRSYAERQAFNSVVQGSA 842


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 75/463 (16%), Positives = 134/463 (28%), Gaps = 84/463 (18%)

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRS 286
            + R   K    L    G+     T +   +     L        +          A + 
Sbjct: 458 ENQRTPLKYTEMLIKGLGIEPLSYTPSGMPQADYNALKQLAGDVEKQQYGLIYHHFAGKG 517

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              K      A+N    L+     L                      R H  ++ I T  
Sbjct: 518 EPQKGIDACVAINDLLELKSIEVLLHTFIIPLIELTDP-------SGRIHTSIN-INTET 569

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+ L           +R   IA +G KL+VAD   +E RVLA M   +  + A
Sbjct: 570 GRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDA 629

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ------RAIGKVMELALGYQGGAKAFQKMASTT 455
           F  G D +  T    F     ++ K +      ++ GK                      
Sbjct: 630 FLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAP-------------------- 669

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                    +    +A        NF     +     A +        ++   AW  +  
Sbjct: 670 ------APLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRK 723

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +    +    +        +    R      Y ++                Y + G 
Sbjct: 724 EVEQWQYNVRMIAKNQFFTQTLL---GRYRYLEKYFQQQTR------------SYINHGL 768

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R+ +NT  +         G   + ++ A+ +        +    GY ++L VHDE++ E
Sbjct: 769 -RAAINTPIQ---------GGAADIVIAAMVK---IYKNQSLKDLGYKLLLQVHDELILE 815

Query: 636 TP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG------YESK 671
            P +  +    ++  LM +       LPL+ +       YE K
Sbjct: 816 GPEENAQEALKIVKELMENPFEIQLELPLEVDAKIGNNWYECK 858


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/463 (16%), Positives = 134/463 (28%), Gaps = 84/463 (18%)

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRS 286
            + R   K    L    G+     T +   +     L        +          A + 
Sbjct: 458 ENQRTPLKYTEMLIKGLGIEPLSYTPSGMPQADYNALKQLAGDVEKQQYGLIYHHFAGKG 517

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              K      A+N    L+     L                      R H  ++ I T  
Sbjct: 518 EPQKGIDACIAINDLLELKSIEVLLHTFIIPLIELTDP-------SGRIHTSIN-INTET 569

Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
               + +P+ L           +R   IA +G KL+VAD   +E RVLA M   +  + A
Sbjct: 570 GRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDA 629

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ------RAIGKVMELALGYQGGAKAFQKMASTT 455
           F  G D +  T    F     ++ K +      ++ GK                      
Sbjct: 630 FLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAP-------------------- 669

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                    +    +A        NF     +     A +        ++   AW  +  
Sbjct: 670 ------APLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRK 723

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +    +    +        +    R      Y ++                Y + G 
Sbjct: 724 EVEQWQYNVRMIAKNQFFTQTLL---GRYRYLEKYFQQQTR------------SYINHGL 768

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
            R+ +NT  +         G   + ++ A+ +        +    GY ++L VHDE++ E
Sbjct: 769 -RAAINTPIQ---------GGAADIVIAAMVK---IYKNQSLKDLGYKLLLQVHDELILE 815

Query: 636 TP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG------YESK 671
            P +  +    ++  LM +       LPL+ +       YE K
Sbjct: 816 GPEENAQEALKIVKELMENPFEIQLELPLEVDAKIGNNWYECK 858


>gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31]
 gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31]
 gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31]
          Length = 617

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 94/555 (16%), Positives = 161/555 (29%), Gaps = 69/555 (12%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D    G+  Y+    +    FG       +              + +       + HN+ 
Sbjct: 40  DTETTGLAMYSSGYKLRTVQFGTAHEAW-VIHYELGGRF-AEAADYVLKHCPRFLIHNAP 97

Query: 75  FERTVLKAC--FNLDIPIHRWICTLVLARSN--------GLPSALKAVGEALKLSSQKME 124
           F+  VL A    +++    R + T + A           G+ + LK +       S    
Sbjct: 98  FDWLVLDAHTPVSMESLAPRTVDTKIKATLIDPRQPQDGGIGTGLKPLSAFYVDPSAPDT 157

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------FKRL-- 175
           +G         G T E  +      H      +  Y   DV  T  +         RL  
Sbjct: 158 QGDLTAVFRSLGLTKETGWAGIDLRHP----TYNLYAGLDVIYTARLNPCLDAEHARLSI 213

Query: 176 -EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              L   E E+ Y+   +   G  +D+    TL +++  E  K    L +     V S  
Sbjct: 214 RPTLLEYEHEIAYMCAYMQRAGLALDLEYVDTLRRMLREEEEKH---LYAAAMWGVDSVN 270

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              ++   L L  G   E LT+ T    L  +K +      +  +  R        L   
Sbjct: 271 SGAQVAEAL-LAMG---ETLTQRTDGGALKVDKAVLLPLADLDRDWERIGAREPNPLAEA 326

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           V      G+   T     A+             N     R H  ++ +         +  
Sbjct: 327 VLRAKRAGKWVTTYADRFAN-------------NHDPHGRIHPNINTLQARTGRMSINGD 373

Query: 355 DPLQIISDC---VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE---D 407
              Q +      +R  ++       +   D   IE RVLA +A  +     F  G    D
Sbjct: 374 FAAQTLPSSDWMIRRAIVGDAPDHIMGSVDFQAIEMRVLAALADVKRMKDGFVNGGSDFD 433

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +++ T      +   + TK  R + K       Y GG       A  TG      A  V 
Sbjct: 434 IHMYTAQLIKGL---EATKRDRKVFKGAGFGKVYGGGVATI---ARQTGATEAEIARAV- 486

Query: 468 TNSAPEEWEDAENF-CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                  + + +    RW +E      +     G      +        R   + N   Q
Sbjct: 487 -AEYDRVFPEIKRASSRWQREARGTGLVTVSVTGRRLPLDRN-------RTYAVVNYQCQ 538

Query: 527 AFEQTIENGKAIIAR 541
           +  + +     +  R
Sbjct: 539 SAARDVLGQAMLNMR 553



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDTDEFNA 644
           L R  TY   +     Q+ +RD+L + M+N   AG    + L +HDEIV   P  D  + 
Sbjct: 524 LDRNRTYA--VVNYQCQSAARDVLGQAMLNMRDAGLLDYMKLPIHDEIVFSAPKADAKDI 581

Query: 645 S-MLYHLMTSNPSWAKGLPLKAEG 667
           +      MT +     G+P+ A+ 
Sbjct: 582 AREFEKCMTMD---LFGVPVVADA 602


>gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba]
 gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba]
          Length = 2043

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 137/432 (31%), Gaps = 102/432 (23%)

Query: 238  KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT---------------PQAIQVFNNRMR 282
            KL+T ++ + G      +  T  +VL  ++K                 P +  +   R  
Sbjct: 1673 KLETKIYEQHGSRFNLGSSQTVAKVLGLHRKANGRVTTSRQVLEKINSPISQLILGYRKV 1732

Query: 283  ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            A   A   +  L++   +D R+ G      A  TGR S      QN+ +     E   Q+
Sbjct: 1733 AGLLAKS-IQPLLKCCEAD-RIHGQSITYTA--TGRISMTEPNLQNVAK-----EFCIQV 1783

Query: 343  ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
             +         P             V   E + L+ AD   +E R+LA M+ ++  L+  
Sbjct: 1784 GSDALRIACRLP------------FVPKDEDRCLLSADFCQLEMRILAHMSQDKALLEVM 1831

Query: 403  ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             + +DL++   A    +  ++V++D R   K +   + Y  G    + +A +   +    
Sbjct: 1832 NSPQDLFIAIAAHWNKIEESEVSQDLRNSTKHVCYGIVYGMG---MRSLAESLNCSEQEA 1888

Query: 463  AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                      E++  A    R       + A    F+ T   R ++     +S   +L N
Sbjct: 1889 ------RMISEQFHQAYKGIREYTSRVVKFARNQGFVETITGR-RRYLDNINSDEEQLKN 1941

Query: 523  ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            +  +    +   G A                                       +S +  
Sbjct: 1942 QAERQAINSTIQGSA-----------------------------------ADIAKSAILK 1966

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
              + + R   Y  KL                         D+++ +HDE++ E P     
Sbjct: 1967 MEKNIER---YRDKLV------------------LGDQSVDLIMHLHDELIFEVPAAKAK 2005

Query: 643  NASMLYHLMTSN 654
              + +  L   N
Sbjct: 2006 KIAKVLSLTMEN 2017


>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 108/336 (32%), Gaps = 66/336 (19%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H  L+ I T         P+             +R   IA+ G  L+VAD   +E
Sbjct: 528 KGGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLE 586

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A  +  L AF+ G D +  T    +      + K Q                 
Sbjct: 587 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIREAIEKKQ----------------- 629

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +     G N      L    ++        NF     +     + +        + 
Sbjct: 630 -VLLEWYPQPGENKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSVAEAKE 688

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               W ++   V + W +  +  ++  ENG+      R  V          +L     S 
Sbjct: 689 TVNLWYKERKEVLK-WQQARK--KEARENGRVYTLLGRARVFP--------SLTDASSSL 737

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATK 619
           R  V       R+ +NT                   VQ  + D+    M+         +
Sbjct: 738 RGHV------ERAAINTP------------------VQGSAADVAMCAMLEISKNTRLQE 773

Query: 620 AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
            G+ ++L VHDE++ E P ++ E   +++   M+  
Sbjct: 774 LGWKLLLQVHDEVILEGPTESAEVAKAIVVGCMSKP 809



 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 85/268 (31%), Gaps = 63/268 (23%)

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           +     GR+  +L     + TGR S      QN P                         
Sbjct: 524 DISGKGGRVHCSLNIN--TETGRLSARRPNLQNQP------------------------- 556

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
            L+     +R   IA+ G  L+VAD   +E R+LA +A  +  L AF+ G D +  T   
Sbjct: 557 ALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 616

Query: 416 SFNVAPAQVTKDQ--------------------------RAIGKVMELALGYQGGAKAFQ 449
            +      + K Q                          R   K++  ++ Y        
Sbjct: 617 MYPHIREAIEKKQVLLEWYPQPGENKPPVPLLKDAFASERRKAKMLNFSIAYGKTP---V 673

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            ++    +++      V        +++ +   +W Q    E A E+  + T   R  + 
Sbjct: 674 GLSRDWKVSVAEAKETVNLW-----YKERKEVLKWQQARKKE-ARENGRVYTLLGRA-RV 726

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKA 537
           +       S L   + +A   T   G A
Sbjct: 727 FPSLTDASSSLRGHVERAAINTPVQGSA 754



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 102/333 (30%), Gaps = 69/333 (20%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLA 100
           V++ D     ++ +      E+ D+  V HN  F+  V++   N    +  +   T+ +A
Sbjct: 114 VDVLDGGGRDLLNEFAL-FFEDPDIKKVWHNYSFDNHVIE---NYGFSVSGFHADTMHMA 169

Query: 101 RSNGLPSALKAVGEALKLS-SQKMEEG-----KELIAR------FCKGE----------T 138
           R       LK       L+  QK+  G     KELI +      F K +          T
Sbjct: 170 RLWDSSRRLKGGYSLEALTGDQKVMRGAGSCYKELIGKVSMKTIFGKKKLKKDGSEGKMT 229

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------PLS------------S 180
                +  +   RE W  +      D   T +++K +E      P +             
Sbjct: 230 IIAPVEELQREEREPWICYS---ALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMFD 286

Query: 181 KEQELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVS 231
             QE W     +   +   G  VD A    + ++   E+        +            
Sbjct: 287 FYQEYWQPFGEILVRMETEGMLVDRAYLAEVEKVAKAEQEVAANRFRNWACKYCPDAKYM 346

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +     +L+  LF   G+     ++     +        P   +V        +    K 
Sbjct: 347 NVGSDTQLRQLLFG--GVP---NSKDPLLTLPEDKTFKVPNVDKVIEE----GKKTPTKY 397

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             +   + S G +   ++   AS     SG   
Sbjct: 398 RNIK--LCSIG-VDLPIETYTASGWPSVSGVAL 427


>gi|74002862|ref|XP_545125.2| PREDICTED: similar to DNA polymerase theta (DNA polymerase eta)
           [Canis familiaris]
          Length = 576

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/472 (15%), Positives = 140/472 (29%), Gaps = 88/472 (18%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E    Y    +   G         +   I+  +   ++ +   L  G   S    + +
Sbjct: 131 KVEMPSQYCLALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLA-GHSFSFTSSDDI 189

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA-SRSAVLKLNTLVEAM 298
                               + VL+  K L P    +   R    + + V+      + +
Sbjct: 190 -------------------AEDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKRL 230

Query: 299 NS---DGRLRGTLQFLGASRTGRWSGCVFPPQNLPR------------------------ 331
           N      R+    Q   A  TGR +      QN+PR                        
Sbjct: 231 NPFLGMERIYPVSQSHTA--TGRITFMEPNIQNVPRDFEIKMPILVGESPPSQALAKGLL 288

Query: 332 ----PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
                 R          H         D     S  +R   +   G  ++ AD + +E R
Sbjct: 289 PVYGRGRGKRSCGPNSGHQAQVEERASDQGMPFSVSMRHAFVPFSGGLILAADYSQLELR 348

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++ ++  ++   TG D++ +  A    + P  V  D R   K +   + Y  GA  
Sbjct: 349 ILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGA-- 406

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + +    G+  N  A  +++  +   +    +F R   +N   +     F+ T   R +
Sbjct: 407 -KSLGEQMGIKENDAACYIESFKSR--YTGINHFMRETVKNCKRNG----FVQTILGR-R 458

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           +     +            +  Q I +   I  R     P +  ++        LP+   
Sbjct: 459 RYLPGINDNNPYHKAHGKHSHGQYINDCDCIPIR-----PYLQKQELSQIWPEGLPTS-G 512

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                +   R  +NTT                  VQ  + DI+    +N  K
Sbjct: 513 PTVPSLNAERQAINTT------------------VQGSAADIVKIATVNIQK 546


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/439 (15%), Positives = 128/439 (29%), Gaps = 126/439 (28%)

Query: 256  ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            ET+    L++N ++  Q  +V         SA        + + +   +    +      
Sbjct: 775  ETSIDEALATNNEVPSQEPEVSIY-----GSAYNAFGGGQKGIEACHAIAALCEMCSIGS 829

Query: 316  TGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
                       Q++     R H  L+ I T         P+             +R   +
Sbjct: 830  LISNFILPLQGQDVSGENGRIHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFV 888

Query: 370  ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---- 425
            A++G  L+VAD   +E R+LA +A  +  L AF+ G D +  T    +      V     
Sbjct: 889  AAQGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGRV 948

Query: 426  ----------------------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
                                    +R   K++  ++ Y    K    +A    +++    
Sbjct: 949  LLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYG---KTTIGLARDWKVSVKEAK 1005

Query: 464  HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
              V                RW ++                      W             
Sbjct: 1006 ETVD---------------RWYRDRKE----------------VSDW------------- 1021

Query: 524  LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL-VYRDVGNNRSYLNT 582
                     +  +   AR+ R V  +  +          PS ++          R+ +NT
Sbjct: 1022 ---------QEQRKFEAREFRRVHTLLGR------ARWFPSVKNATGSVKGHIERAAINT 1066

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCET 636
                               VQ  + D+    M+         + G+ ++L VHDE++ E 
Sbjct: 1067 P------------------VQGSAADVAMCAMLEISKNARLEELGWKLLLQVHDEVILEG 1108

Query: 637  PDTDEFNA-SMLYHLMTSN 654
            P+  E  A +++   M+  
Sbjct: 1109 PEESENEAMAIVVDCMSKP 1127


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1047

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 103/336 (30%), Gaps = 68/336 (20%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
            +  R H  L+ I T         P+             +R   +AS G  LVVAD   +E
Sbjct: 743  KDGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQLE 801

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
             R+LA + G +  ++AF+ G D +  T    +      V   Q          +  +   
Sbjct: 802  LRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHIREAVENGQ----------VILEWHP 851

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            +         G +      L     +        NF     +     + +        + 
Sbjct: 852  QP--------GEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAIGLSRDWKVSVEEAQD 903

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
              K W      V +      +  ++ IE+G       R      Y  + + N        
Sbjct: 904  TVKLWYNDRQEVRKW---QERRKKEAIEDGYVRTLLGRSRRFPRYKSRAQKN-------- 952

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATK 619
                       R+ +NT                   VQ  + D+    M+         K
Sbjct: 953  --------HIQRAAINTP------------------VQGSAADVAMCAMLEISTNQQLKK 986

Query: 620  AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
             G+ ++L +HDE++ E P ++ E    ++   M+  
Sbjct: 987  LGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKP 1022



 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 87/297 (29%), Gaps = 65/297 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-------ARSNGLPSA 108
             K   E++ +  V HN  F+  +++   N  I I  +    +        AR      +
Sbjct: 343 EFKPYFEDSFIRKVWHNYSFDSHIIR---NHGIEISGFHADTMHMARLWDSARRIEGGYS 399

Query: 109 LKAVG---EALKLSSQKMEE---GKELI-----ARFCKGETHECLYDRNKP------NHR 151
           L+A+    + L  +  K E    GK  +      R  K +  E       P        R
Sbjct: 400 LEALTSDPKVLGGTQTKEEADFLGKISMKTIFGKRKLKKDGSEGKMVVIPPVEELQREDR 459

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEP------------------LSSKEQELW----YLD 189
           EAW  +      D   T ++++ +                    +     E W     L 
Sbjct: 460 EAWISYS---ALDAISTLKLYESMTKKLQMMDWRLDGKPVLERTMLDFYHEFWRPFGELL 516

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-----SSRCLEKLKTWLF 244
             +   G  VD      + ++   E+        +            +     +L+   F
Sbjct: 517 VKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFF 576

Query: 245 LETG-------LHLEDLTET-TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
                      L +E L +     +V+   KK   +   +  +R+  S  +   L  
Sbjct: 577 GGISNSVNGEVLPVEKLFKIPNIDKVIEVGKKTATKFRNIKLHRISDSPLSTENLTA 633


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 103/706 (14%), Positives = 202/706 (28%), Gaps = 154/706 (21%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-- 99
           V++ D   D +M        E+  +  V HN  F+  V++   N  I +  +    +   
Sbjct: 331 VDVLDGGRDVLM--EFAPFFEDPSIRKVWHNYSFDSHVIE---NYGIKVAGFHADTMHLA 385

Query: 100 -----ARSNGLPSALKAVGEALKL----SSQKMEEGKELIA-----RFCKGETHECLYDR 145
                +R      +L+ +    ++      +  + GK  +      +  K +        
Sbjct: 386 RLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIIS 445

Query: 146 NKP------NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------------- 183
            +P      + RE W  +      D   T  +++ L+    K+                 
Sbjct: 446 MEPVEVLQRDDREMWICYSSL---DSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYE 502

Query: 184 ELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-----SSR 234
           E W     L   +   G  VD      + ++   +R     +               +  
Sbjct: 503 EYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVN 562

Query: 235 CLEKLKTWLFL------ETG--LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
              +++   F       + G  L      +      L +  K TP+   +    +     
Sbjct: 563 SDTQIRQLFFGGIENRCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYCTIELFSIVEDLK 622

Query: 287 AVLKLNTLVEAMNSD------GRLRGTLQFLGASRTGRWSG-CVFPPQNLPRPSRSHEEL 339
             L   +   +++ D      G+L   L +         SG       +L   +      
Sbjct: 623 TDLFTASGWPSVSGDALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTASYGTAY 682

Query: 340 DQI------------------ITHLPTSITSDPDPLQIISDC------VRSCVIASEGKK 375
           +                    I  + + I++   PLQ           +R   +A+ G  
Sbjct: 683 EAFGGGKKGKEACHAIAALCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVAAPGNS 742

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+VAD   +E R+LA +A  +  L AF+ G D +  T    +      V +      KV 
Sbjct: 743 LIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEK-----KV- 796

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                         +     G        L     A        NF     +     A +
Sbjct: 797 ------------LLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARD 844

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   +   K W +    V   W    +   Q       ++ R RR   + +    +
Sbjct: 845 WKVSVKEAKDTLKLWYRDRKEVLA-WQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQ 903

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                                R+ +N                    VQ  + D+    M+
Sbjct: 904 RG----------------HIERAAINAP------------------VQGSAADVAMCAML 929

Query: 616 NATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
              +       G+ ++L VHDE++ E P ++ +   S++   M+  
Sbjct: 930 EIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKP 975


>gi|119493749|ref|ZP_01624319.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
 gi|119452494|gb|EAW33680.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
          Length = 874

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 107/338 (31%), Gaps = 34/338 (10%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            DV   +   + L  ++  E         ++  G  +D A      Q ++ ER       
Sbjct: 113 RDVLRVKLASEELIEVAKIEFNATKATAQMSQNGVRLDTAWLKDKQQELEEERRG----- 167

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ----AIQVFN 278
                          ++K WL  +     + +  +       ++K  T +    A     
Sbjct: 168 ------------LESQVKDWLGEKLPDETDKIQLSDLTSTKKADKTQTLECFNRAGVPLE 215

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +  +    ++   + ++       R+R     +G                +   ++ +  
Sbjct: 216 SFNKNHIQSLTTEHPILNQFQ---RMRTVNDLIGNKGIQGL------LNVVDDENKVYPT 266

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK---KLVVADLAGIEARVLAWMAGE 395
             Q          + P    I +   R+ +   +G+     V AD +  E R+LA + G+
Sbjct: 267 WHQNSAATGRMSATKPAIQNIPASLKRAIIPEQQGEEKQVFVRADYSQQELRILAQLTGD 326

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-T 454
           +    A++ G D +  T +        Q+T ++R   K +     Y    +  Q  A  +
Sbjct: 327 KTLTSAYQEGRDAHRLTASLMTGKPENQITSEERQRAKPVNFGKIYGQSPQGLQSYAKVS 386

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
            G+  +    +    +  + +       + ++++    
Sbjct: 387 YGVEFSIEDAMKFQAAMDKGYPSVARHEQQVRQDFKHQ 424


>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
 gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1044

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 111/362 (30%), Gaps = 120/362 (33%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
            +  R H  L+ I T         P+             +R   IAS G  L+VAD   +E
Sbjct: 740  KDGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLE 798

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-----NVAPAQVTKD------------- 427
             R+LA +A  +   +AF  G D +  T    +      V   +V  +             
Sbjct: 799  LRILAHLASCKSMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVP 858

Query: 428  --------QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    +R   K++  ++ Y   A     ++    +++      V             
Sbjct: 859  LLKDAFASERRKAKMLNFSIAYGKTA---IGLSRDWKVSIEEAQDTVN------------ 903

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                          W      V + W EL +  ++ I+NG  + 
Sbjct: 904  -----------------------------LWYNDRQEVRK-WQELRK--KEAIQNGYVLT 931

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
               R     VY  + + N                   R+ +NT                 
Sbjct: 932  LLGRARKFPVYRSRAQKN----------------HIERAAINTP---------------- 959

Query: 600  NIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
              VQ  + D+    M+  +K       G+ ++L +HDE++ E P ++ E    ++ + M+
Sbjct: 960  --VQGSAADVAMCAMLEISKNQRLKELGWKLLLQIHDEVILEGPSESAENAKDIVVNCMS 1017

Query: 653  SN 654
              
Sbjct: 1018 EP 1019



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 108/353 (30%), Gaps = 79/353 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVMPQVLKEA-- 60
           ID +T +P+D        + E +C  ++      F D    +W  V       +L E   
Sbjct: 288 IDVKTETPVD--------HGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKP 339

Query: 61  -LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-------ARSNGLPSALKAV 112
             E++ +  V HN  F+  +++   N  I +  +    +        +R      +L+A+
Sbjct: 340 FFEDSSIKKVWHNYSFDNHIIR---NYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEAL 396

Query: 113 G---EALKLSSQKMEE---GKELIAR-FCKGETHECLYDRNK---P-------NHREAWR 155
                 L  +  K E    GK  + + F KG+  +   +      P         REAW 
Sbjct: 397 TSDPRVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLS------------------SKEQELW----YLDQTIN 193
            +      D   T ++++ ++                        QE W     L   + 
Sbjct: 457 SYS---ALDSISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYWQPFGELLAKME 513

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-----SSRCLEKLKTWLF---- 244
             G  VD      +  +   E+        S            +     +L+   F    
Sbjct: 514 SEGMLVDRDYLAQIEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDTQLRQLFFGGIS 573

Query: 245 ---LETGLHLEDLTET-TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +  L  E L +     +V+   KK   +   +  +R+        K   
Sbjct: 574 NSCNDEDLPYEKLFKVPNVDKVIEKGKKRATKFRNIKLHRISDRPLPTEKFTA 626


>gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus]
          Length = 1821

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/428 (16%), Positives = 149/428 (34%), Gaps = 83/428 (19%)

Query: 250  HLEDLTETTCQRVLSSNKKLT------------PQAIQVFNNRMRASRSAVLKLNTLVEA 297
              +   +   + +L  N  L              +      ++ +   +    +  L++ 
Sbjct: 1449 KTKQKAKPKLKEILERNLLLANCNTDSIIYNSEDETTLSLASKTKIIETQSNLIQPLLKL 1508

Query: 298  MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
              +D R+RG    +  + TGR S      QN+P+                    +D + +
Sbjct: 1509 AQTDSRVRG--NSITCTVTGRVSMHEPNLQNVPKD----------------FSFADNNFV 1550

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                  VR   + + G  ++ AD   +E R+L   + +    +      D++ +  A+  
Sbjct: 1551 L----SVRMAFVPALGNIMLSADYCQLELRLLTHFSQDSILCEIMRQPGDIFKSIAAKWN 1606

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            NV+  +VT + R   K +   + Y  G    + +A    ++ +     +++         
Sbjct: 1607 NVSEEEVTIEMRQRTKQLCYGMIYGMGV---KSLAENLCISESEAQEFLES-----FMST 1658

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                 +W+  N  E A  D++I T   R ++    K ++ S       QA    ++   A
Sbjct: 1659 YPGIYKWL-NNVLEEAHRDVYITTLLGRRRQFPDLKSTKSSTRAQAERQAVNTKVQGSAA 1717

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
             I +K        ++ +  +  ++ P                +N T +            
Sbjct: 1718 DIVKKAMISIEERIRCNFPDSAIIFPE---------------MNNTRK------------ 1750

Query: 598  TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656
                +++ SRD          + G  +VL +HDE++ E    D +  A+++   M +   
Sbjct: 1751 ----LRSNSRD--------MQQRGGYLVLQLHDELLYEVNLADLKEVAAIIRESMENVCQ 1798

Query: 657  WAKGLPLK 664
                LP+K
Sbjct: 1799 LTVPLPVK 1806


>gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group]
          Length = 2044

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 101/690 (14%), Positives = 188/690 (27%), Gaps = 157/690 (22%)

Query: 24   YAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK- 81
            Y      ++ A   D   +E+WD           + E +    V  +  N  F+   LK 
Sbjct: 1442 YCNFPKDLMMAGSNDS--IEMWDELTRRWN---RVIEIMRQNSVKKMTWNLKFQIQALKY 1496

Query: 82   ------ACFNLDIPIHRWICTLVL----------ARSNGLPSALKAVGEALKLSSQKME- 124
                      L +         VL          +  +GL   L  V   L    +    
Sbjct: 1497 PCVSCQRLSRLHLDYKMLKNVEVLDNLYVFLQPVSVHSGLDICL--VAWVLWPDEESKTV 1554

Query: 125  -EGKELIARFCKGETHEC----LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               ++L+ R    E           RN+ +     +     C      TR +   L  L 
Sbjct: 1555 PNLEKLVKRRLHNEAAAAANRDGRWRNQMH-----KAAHNGCCRRAAQTRALCSVLRKLL 1609

Query: 180  SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                        E  L  +   +   G   D+        I+  +  +L++E   L  G 
Sbjct: 1610 VSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEKEAYKLA-GK 1668

Query: 230  VSSSRCLEKLKTWLFLETGLHLED------LTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              S      +   L+    L +        L  +T ++ L   +   P    +  +R  A
Sbjct: 1669 SFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLA 1728

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                   LN  + ++ S             ++    S          +         Q  
Sbjct: 1729 KL-----LNGTLGSICS------------RAQLCSKS----------QRYIIQGNWLQTS 1761

Query: 344  THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            T        +P+                E   LV AD + IE R++A  + +   ++   
Sbjct: 1762 TATGRLSMEEPNLQ--------------ENWLLVTADYSQIELRLMAHFSKDTALIELLS 1807

Query: 404  T-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
                D++    +R    A + +   +R   K     + Y  GA +  +      L  +  
Sbjct: 1808 KPDGDVFTMIASRWTGKAESLICSKERETTKRFIYGILYGMGANSLAEQ-----LECSPE 1862

Query: 463  AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                K  S    +    ++      +       +  +G      ++   +  +  S+   
Sbjct: 1863 DAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLMGR-----RRFLSKITAGNSKEKA 1917

Query: 523  ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            +  +    +I  G A    K   + +                           N S +  
Sbjct: 1918 KAQRQAVNSICQGSAADIIKVAMIKV----------------------HSAITNGSTVGA 1955

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--KAGYDIVLTVHDEIVCETPDTD 640
            T                        D +   M N +  +    ++L VHDE+V E     
Sbjct: 1956 TV-----------------------DSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCM 1992

Query: 641  EFNASMLYHLMTSNPSWAKG-----LPLKA 665
               A  L   +  N +   G     L L+A
Sbjct: 1993 VAEAVRLLQTVMENSASLLGPSVSFLLLRA 2022


>gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica
            Group]
          Length = 2065

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 101/690 (14%), Positives = 188/690 (27%), Gaps = 157/690 (22%)

Query: 24   YAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK- 81
            Y      ++ A   D   +E+WD           + E +    V  +  N  F+   LK 
Sbjct: 1463 YCNFPKDLMMAGSNDS--IEMWDELTRRWN---RVIEIMRQNSVKKMTWNLKFQIQALKY 1517

Query: 82   ------ACFNLDIPIHRWICTLVL----------ARSNGLPSALKAVGEALKLSSQKME- 124
                      L +         VL          +  +GL   L  V   L    +    
Sbjct: 1518 PCVSCQRLSRLHLDYKMLKNVEVLDNLYVFLQPVSVHSGLDICL--VAWVLWPDEESKTV 1575

Query: 125  -EGKELIARFCKGETHEC----LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               ++L+ R    E           RN+ +     +     C      TR +   L  L 
Sbjct: 1576 PNLEKLVKRRLHNEAAAAANRDGRWRNQMH-----KAAHNGCCRRAAQTRALCSVLRKLL 1630

Query: 180  SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                        E  L  +   +   G   D+        I+  +  +L++E   L  G 
Sbjct: 1631 VSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEKEAYKLA-GK 1689

Query: 230  VSSSRCLEKLKTWLFLETGLHLED------LTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              S      +   L+    L +        L  +T ++ L   +   P    +  +R  A
Sbjct: 1690 SFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLA 1749

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                   LN  + ++ S             ++    S          +         Q  
Sbjct: 1750 KL-----LNGTLGSICS------------RAQLCSKS----------QRYIIQGNWLQTS 1782

Query: 344  THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            T        +P+                E   LV AD + IE R++A  + +   ++   
Sbjct: 1783 TATGRLSMEEPNLQ--------------ENWLLVTADYSQIELRLMAHFSKDTALIELLS 1828

Query: 404  T-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
                D++    +R    A + +   +R   K     + Y  GA +  +      L  +  
Sbjct: 1829 KPDGDVFTMIASRWTGKAESLICSKERETTKRFIYGILYGMGANSLAEQ-----LECSPE 1883

Query: 463  AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                K  S    +    ++      +       +  +G      ++   +  +  S+   
Sbjct: 1884 DAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLMGR-----RRFLSKITAGNSKEKA 1938

Query: 523  ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            +  +    +I  G A    K   + +                           N S +  
Sbjct: 1939 KAQRQAVNSICQGSAADIIKVAMIKV----------------------HSAITNGSTVGA 1976

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--KAGYDIVLTVHDEIVCETPDTD 640
            T                        D +   M N +  +    ++L VHDE+V E     
Sbjct: 1977 TV-----------------------DSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCM 2013

Query: 641  EFNASMLYHLMTSNPSWAKG-----LPLKA 665
               A  L   +  N +   G     L L+A
Sbjct: 2014 VAEAVRLLQTVMENSASLLGPSVSFLLLRA 2043


>gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus]
          Length = 822

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 152/476 (31%), Gaps = 70/476 (14%)

Query: 68  IVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
           +V  N+  F RTVL+           W      A   GL      V   L   S      
Sbjct: 317 VVCFNAKDFVRTVLQLYGEDG----SWKHV---ADFVGLD---PRVAAWLIDPSDTAPSF 366

Query: 127 KELIARFC------KGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLEPLS 179
           ++L+A+        K  +      RN  +      L        D+    + +   +   
Sbjct: 367 EDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFC 426

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           + E  L  +   + +    VD       + ++     +L+QE   +  G         +L
Sbjct: 427 TLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVA-GEQFLIMSNNQL 485

Query: 240 KTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +  LF +  LHL    +           +T + +L+S + L P    +   R      + 
Sbjct: 486 REILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKST 545

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---PRPSRSHEELDQIITH 345
                 + A    G +  T    G + TGR S      Q +   P               
Sbjct: 546 --FIDGLLAYMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEE 602

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
             T                R+  ++SEG   + AD + IE R+LA ++G+   LK F+  
Sbjct: 603 TVTISP-------------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQES 649

Query: 406 E--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           E  D++ T  ++  ++   +VT   R   K +  ++ Y  G                   
Sbjct: 650 ERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAG------------------- 690

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           ++                 + ++      A+  +  G+A +  K A  +  + V+ 
Sbjct: 691 YVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVAT 746



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           Q  R      +    +VQ  + D+    M+  + A          +V  +HDE++ E  D
Sbjct: 710 QQLRAQAER-QAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVED 768

Query: 639 T--DEFNASMLYHLMT 652
           T   EF A+++  +M 
Sbjct: 769 TQVPEF-AALVRRIME 783


>gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 288

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 91/278 (32%), Gaps = 87/278 (31%)

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF  G+D++++T A  F V+  +VT +QR   K +   L Y  
Sbjct: 1   IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGM 60

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A     ++   G++       +                                     
Sbjct: 61  SAF---GLSRQLGISRPDAQKYMD------------------------------------ 81

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                 + Q++  V +   ++ +A  +     + +  R+                 L LP
Sbjct: 82  -----LYFQRYPSVQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLP 118

Query: 564 SGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
              S    R  G  R  +N                     Q  + DI+   M+   +   
Sbjct: 119 DINSSNAMRRKGAERVAINAPM------------------QGTAADIIKRAMIKIDEVIR 160

Query: 621 ---GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN 654
                ++++ VHDE+V E   +   F    +   M + 
Sbjct: 161 HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAA 198


>gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured gamma proteobacterium HF0070_03O15]
          Length = 454

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 98/269 (36%), Gaps = 51/269 (18%)

Query: 231 SSSRCLEKLKTWLFLETGLHL--EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +  ++L   L L  G      D   +  +  L +    +P    +   + R  R  +
Sbjct: 114 FNIKSSKQLLEKLELVLGYTPVNNDGKPSVAKDALKNCAADSPTIQTLMTWKRREKRRQM 173

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             + ++ + M++DG +R +   LGA                                   
Sbjct: 174 --IESIQDKMSNDGFVRASYMQLGA-------------------------------DTGR 200

Query: 349 SITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             +  P+  QI  D   R CV A +G K+V AD + +E R+ A +A ++    AF+ GED
Sbjct: 201 MSSIKPNNQQIPRDSEFRQCVQAPQGWKIVDADFSQMELRLAAALAKDKNMTAAFQRGED 260

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL-- 465
           L+  T  +             R I K     L Y  GA+  +K A ++G+ +     +  
Sbjct: 261 LHDYTAEQM---------GCDRQIAKSANFGLLYGAGAEGLRKYAGSSGVIMTNDEAVKI 311

Query: 466 ----VKTNSAPEEWEDAENFCRWMQENHP 490
               + T S   +W+   N+     E   
Sbjct: 312 RDNWLTTYSGIRDWQREMNYLSRSTEGDE 340


>gi|303271985|ref|XP_003055354.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
 gi|226463328|gb|EEH60606.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
          Length = 1996

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 80/544 (14%), Positives = 144/544 (26%), Gaps = 145/544 (26%)

Query: 178  LSSKEQELWYLDQTINDRGYCV-DVALAHTLNQIVDVERTKLDQELESLT---------- 226
            L + E  L  +  ++   G       L+  L +     R    + +  +           
Sbjct: 1503 LRAIEMPLVPVLASMERAGVAFAPATLSRQLRRATKRVREIETEAVAVVATHFACRHPGM 1562

Query: 227  YGLVSSSRCLEKLKTWLFLE----TGLHLEDLTETTCQR-------------VLSSNKKL 269
                 +    + +   LF       G       + T  R             V      +
Sbjct: 1563 APPEFNLASSDDVARVLFDAPPAGLGAEPPRGAKPTAARGRRSTRQDDLLALVREQGGPI 1622

Query: 270  TPQAIQVFNNRM------------RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
                  V  +R             R ++S +          +   RLRG +     + TG
Sbjct: 1623 AAFPKLVLEHRSLRKLLDEANEFGRLAKSELGGDAAAAADESVTIRLRGVIHQTN-TGTG 1681

Query: 318  RWSGCVFPPQNLPRPSR--SHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGK 374
            R +      Q +PRP          + ++        +D    + +   +R+   A  GK
Sbjct: 1682 RLAMEDPNLQCVPRPREFALSRAYPERLSASGRVSPGTDAGAEETL--AIRNAFRAPRGK 1739

Query: 375  KLVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSF--NVAPAQVTKDQRAI 431
            KL+  D   IE RV+A ++ ++  + A      D +    AR       P  V+ + RA 
Sbjct: 1740 KLIAFDYKQIELRVIAHLSCDRGLIAALCVRSVDPFKVIAARWKGDGTTPKNVSDEDRAK 1799

Query: 432  GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             K +   + Y  G   +Q+    T L         K +                      
Sbjct: 1800 AKELCYGICYGAGVGRYQQAMGVTELEARAAIEDFKRSLPG------------------- 1840

Query: 492  HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                            + W+            +  A E+T  + + I  R          
Sbjct: 1841 ---------------VERWKSAL---------VKDARERTPPHVRTIAGR---------- 1866

Query: 552  KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                      LPS           N +      R          K      Q  + DI+ 
Sbjct: 1867 -------CRFLPS----------LNATGAGGEIRAADER-----KAINTACQGSAADIVK 1904

Query: 612  EGMMNATKA--------------------GYDIVLTVHDEIVCETPDTD-EFNASMLYHL 650
              M+                           ++VL VHDE++ E  +   +     +  +
Sbjct: 1905 RVMIELHAKLTSGGGADDDDEWAPLREVDACEMVLQVHDELLFEVDERKVDVAVRAIRGV 1964

Query: 651  MTSN 654
            M   
Sbjct: 1965 MERA 1968


>gi|322822411|gb|EFZ28469.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 127/408 (31%), Gaps = 70/408 (17%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL-VSS 232
            L     +E+ +  L   +   G+ V+++              +L    + L   +   +
Sbjct: 458 LLPAFLKQEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFN 517

Query: 233 SRCLE----------KLKTWLFLETG-------LHLEDLTE-TTCQRVLSSNKKLTPQAI 274
            + LE          +L T L            L +    + +T +  L           
Sbjct: 518 MQNLEECRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPR 577

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMN--------SDGRL-----------------RGTLQ 309
            +   R  A       +  +  A          +D R+                      
Sbjct: 578 LLIAYRKTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFV 637

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             G + TGR S      QNLPR     E  +           S+P   ++     R C  
Sbjct: 638 QEG-TDTGRLSCVEPNLQNLPRSKAIAENDN-----------SEPYEAEM--ATFRRCFA 683

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
              G  L+  D   IE RV+A ++ +   + A     D++       F  +P  V  ++R
Sbjct: 684 VPIGLTLLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VNVEER 741

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
            + K +   + Y  G    + +A+  G+ +    H++    A   +   E + R + +  
Sbjct: 742 TLAKRVVFGMLYGAGP---RTLATQMGVPMERALHVMSLFKAS--YPQIERYQRRVIDQC 796

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                 D F+ T   R+ ++    + RV        +    ++  G A
Sbjct: 797 RT----DGFVRTMTGRI-RSLPDINDRVMAKRMYAERQAFNSVIQGSA 839


>gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa]
          Length = 1413

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 131/379 (34%), Gaps = 54/379 (14%)

Query: 206  TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----------DL 254
             + Q+    R K  ++      G         +L+  LF +  LHL              
Sbjct: 950  QIAQMQPKFRLKELEQEAHFVAGEQFLITSNSQLREMLFGKLKLHLLHPRATLPRMGLQR 1009

Query: 255  TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
              +T   VLS+ + L P    +   R      +       + A    G +       G +
Sbjct: 1010 PPSTSDTVLSALQDLHPLPRIILEYRQVHKIKST--FVDGLRAHMKKGSVSSVWNQTG-T 1066

Query: 315  RTGRWSGCVFPPQNL---------PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
             TGR S      Q +         PR ++        ++                    R
Sbjct: 1067 VTGRLSAKRPNMQGISKLPIQIGAPRNAKGEAGDALTVSA-------------------R 1107

Query: 366  SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQ 423
            S  ++ EG+  + AD + IE R+LA ++G+   LK F+  E  D++    ++   ++P  
Sbjct: 1108 SLFVSPEGRSFLAADFSQIELRILAHLSGDPELLKLFQEPERDDVFSALTSQWKGISPEH 1167

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            VT+  R   K +  A+ Y  G    +++A+  G+ L   A   ++    ++++  ++F +
Sbjct: 1168 VTQADREQTKKVVYAVVYGAG---RERLAACLGVTLREAARFGESFL--QKYKKIKDFTQ 1222

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                   +    +  +G      ++   +  +R  +L  +  +     +  G A    K 
Sbjct: 1223 ATIARCHQTGYVESVMGR-----RRPLPRIRARDQKLRAQAERQAVNFVVQGSAADLCKM 1277

Query: 544  RDVPLVYMKKDKNNLILML 562
              + +         L   L
Sbjct: 1278 AMIRIFAAVATSPTLTARL 1296


>gi|281207443|gb|EFA81626.1| DNA polymerase theta short isoform [Polysphondylium pallidum PN500]
          Length = 1192

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 89/619 (14%), Positives = 198/619 (31%), Gaps = 120/619 (19%)

Query: 98   VLARSNGLPSALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDR--------N 146
            +L++   L   L     AL L      K ++ + +     KG        +         
Sbjct: 614  LLSKGISLKHRLIDPKIALWLTDSDLHKDKKLEYVYMDNAKGSKKMIGATKFHNISKLAT 673

Query: 147  KPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----LSSKEQELWYLDQTINDRGYCVDV 201
            +      + L  + C   + +++ + K+L+P     L   E  +  +   +   G   D 
Sbjct: 674  RSGSTNHFDLAYQACYQTLILSQRLLKQLDPSSLKILFEIEMPVTPILARMEFIGIGFDD 733

Query: 202  ALAHTLNQIVDVERTKLDQELE----SLTYGLVSSSRCLEKLKTWLFL-----ETGLHLE 252
             +     ++V  +   L  +       L   + S  +  + +  WL L      T   + 
Sbjct: 734  EICQNTRELVQKKIDYLIYKAHLLVPRLKLDMESKIQMSDVMYNWLKLTKPDSRTNKKVL 793

Query: 253  DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR--SAVLKLNTL-VEAMNSDGRLRGTLQ 309
              + +T    L +     P    +   R  +    +   +L      + ++  R+  T+ 
Sbjct: 794  KESYSTNAHHLETISHEHPFPNILMEYRKLSHHINNYADELRKYCYRSTDNSMRIYSTIL 853

Query: 310  FLGASRTGRWSGCVFPPQNLPRPSR----------------SHEELDQIITHLPTSITSD 353
                  TGR +      Q++  P                  +  +++     L    +  
Sbjct: 854  QTIVP-TGRLAMVFPNLQSIAHPIEFKVAPTFTPSPLSIASNSSDIEIPAVDLENHSSQY 912

Query: 354  PDPLQIISDC------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-E 406
             + + + S C      +R   +  +G   + AD + IE R+LA  + +   L+ F     
Sbjct: 913  NNLVAMESKCETLSIKIRDSFLPKQGYIFLSADYSQIELRILAHFSQDPKLLEIFNNSTV 972

Query: 407  DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
            D++     +   +   Q+    R I K +   + Y  G        +TT           
Sbjct: 973  DVFKLISHQMSKIPLEQIKDSDRTIAKHLCYGILYGMGIGKLAHDLNTTK---------D 1023

Query: 467  KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
            K  +A   ++           +  +  +++ F+ T   R K+ +R+           + +
Sbjct: 1024 KAKAALLRFKTTYQVLTDYLTSVGDSCLKNGFVETFFGR-KRYFRE-----------VFE 1071

Query: 527  AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             ++ T    +   + KR+    +             P G +        ++  +    + 
Sbjct: 1072 VYKDTKVTNEVKESAKRKAKNTI-------------PQGTA-----ADISKLAMIQVDK- 1112

Query: 587  LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                     KL E   + +  +I               VL VHDE++ E P++     ++
Sbjct: 1113 ---------KLNE---RGIPAEI---------------VLQVHDELLLEVPESQLAEVAL 1145

Query: 647  L-YHLMTSNPSWAKGLPLK 664
            +    M S    +  +P+K
Sbjct: 1146 IVKESMESAAKLSIPIPIK 1164


>gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis]
 gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis]
          Length = 2181

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 78/478 (16%), Positives = 149/478 (31%), Gaps = 99/478 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G+         L Q +     +L+ ++  L +G   +    + +
Sbjct: 1774 ELEMPIQMSLCHMECIGFPAKEHSLQRLFQQMMATMKRLESKIYEL-HGSRFNLGSTQAV 1832

Query: 240  KTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L    GLH +     +T +++L      +P +  + N R  +   A  K    +   
Sbjct: 1833 AKVL----GLHRKANGRVSTSRQILEKID--SPISQLILNYRKLSMLLA--KSMQPLLKC 1884

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                R+ G      A  TGR S      QN+ +        +Q+                
Sbjct: 1885 CQANRVHGQSITYTA--TGRISMSEPNLQNVAKDFHIELGKEQLKISC------------ 1930

Query: 359  IISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                  RS      E + L+ AD   +E R+LA ++ ++  L+   + +DL+    A   
Sbjct: 1931 ------RSAFAPMDEKRCLISADFCQLEMRILAHLSQDKALLQVMNSTQDLFTAIAAHWN 1984

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             +  + V++  R   K +   + Y  G ++  +    T           +     E++  
Sbjct: 1985 KIDESNVSEQLRNGTKQICYGIVYGMGMRSLSEALKCT---------EQEAQMITEQFHL 2035

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH-QAFEQTIENGK 536
            A    +       + A  + ++ T   R ++     +S   +L  +   QA   TI+   
Sbjct: 2036 AYPGIKAYTMKVVKFARNNGYVETITGR-RRYLDHINSGEVQLKTQAERQAINSTIQGSA 2094

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            A IA+                L +    GR                          Y  K
Sbjct: 2095 ADIAK-------------SAILRMEKNLGR--------------------------YREK 2115

Query: 597  LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654
            L                     K   ++VL +HDE++ E P       + +  L   N
Sbjct: 2116 L------------------GLAKNAVNLVLHLHDELIFEVPTDKAKKVAKVLSLTMEN 2155


>gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1049

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 107/362 (29%), Gaps = 120/362 (33%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
            +  R H  L+ I T         P+             +R   IAS G  L+VAD   +E
Sbjct: 745  KDGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLE 803

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-----NVAPAQVTKD------------- 427
             R+LA +A  +   +AF  G D +  T    +      V   +V  +             
Sbjct: 804  LRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVP 863

Query: 428  --------QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    +R   K++  ++ Y   A     ++    ++       V             
Sbjct: 864  LLKDAFASERRKAKMLNFSIAYGKTA---IGLSRDWKVSREEAQDTVN------------ 908

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                          W      V + W EL +  ++ I+ G  + 
Sbjct: 909  -----------------------------LWYNDRQEVRK-WQELRK--KEAIQKGYVLT 936

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
               R      Y  + + N                   R+ +NT                 
Sbjct: 937  LLGRARKFPEYRSRAQKN----------------HIERAAINTP---------------- 964

Query: 600  NIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
              VQ  + D+    M+         + G+ ++L VHDE++ E P ++ E    ++ + M+
Sbjct: 965  --VQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMS 1022

Query: 653  SN 654
              
Sbjct: 1023 EP 1024



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 109/353 (30%), Gaps = 79/353 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVMPQVLKEA-- 60
           ID +T +P+D        + E +C  ++      F D    +W  V       +L E   
Sbjct: 293 IDVKTETPVD--------HGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKP 344

Query: 61  -LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-------ARSNGLPSALKAV 112
             E++ +  V HN  F+  +++   N  I +  +    +        +R      +L+A+
Sbjct: 345 FFEDSSIKKVWHNYSFDNHIIR---NYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEAL 401

Query: 113 G---EALKLSSQKMEE---GKELIAR-FCKGETHECLYDRNK---P-------NHREAWR 155
               + L  +  K E    GK  + + F KG+  +   +      P         REAW 
Sbjct: 402 TSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWI 461

Query: 156 LFGEYCKGDVTVTREIFKRLEPLS------------------SKEQELW----YLDQTIN 193
            +      D   T ++++ ++                        QE W     L   + 
Sbjct: 462 SYS---ALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKME 518

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-----SSRCLEKLKTWLF---- 244
             G  VD      +  +   E+        +            +     +L+   F    
Sbjct: 519 SEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGIS 578

Query: 245 ---LETGLHLEDLTET-TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +  L  E L +     +V+   KK   +   +  +R+        K   
Sbjct: 579 NSCNDEDLPYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTA 631


>gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding /
            DNA-directed DNA polymerase/ nucleic acid binding
            [Arabidopsis thaliana]
 gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
 gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
 gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
 gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1034

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 107/362 (29%), Gaps = 120/362 (33%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
            +  R H  L+ I T         P+             +R   IAS G  L+VAD   +E
Sbjct: 730  KDGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLE 788

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-----NVAPAQVTKD------------- 427
             R+LA +A  +   +AF  G D +  T    +      V   +V  +             
Sbjct: 789  LRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVP 848

Query: 428  --------QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    +R   K++  ++ Y   A     ++    ++       V             
Sbjct: 849  LLKDAFASERRKAKMLNFSIAYGKTA---IGLSRDWKVSREEAQDTVN------------ 893

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                          W      V + W EL +  ++ I+ G  + 
Sbjct: 894  -----------------------------LWYNDRQEVRK-WQELRK--KEAIQKGYVLT 921

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
               R      Y  + + N                   R+ +NT                 
Sbjct: 922  LLGRARKFPEYRSRAQKN----------------HIERAAINTP---------------- 949

Query: 600  NIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
              VQ  + D+    M+         + G+ ++L VHDE++ E P ++ E    ++ + M+
Sbjct: 950  --VQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMS 1007

Query: 653  SN 654
              
Sbjct: 1008 EP 1009



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 109/353 (30%), Gaps = 79/353 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVMPQVLKEA-- 60
           ID +T +P+D        + E +C  ++      F D    +W  V       +L E   
Sbjct: 278 IDVKTETPVD--------HGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKP 329

Query: 61  -LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-------ARSNGLPSALKAV 112
             E++ +  V HN  F+  +++   N  I +  +    +        +R      +L+A+
Sbjct: 330 FFEDSSIKKVWHNYSFDNHIIR---NYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEAL 386

Query: 113 G---EALKLSSQKMEE---GKELIAR-FCKGETHECLYDRNK---P-------NHREAWR 155
               + L  +  K E    GK  + + F KG+  +   +      P         REAW 
Sbjct: 387 TSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWI 446

Query: 156 LFGEYCKGDVTVTREIFKRLEPLS------------------SKEQELW----YLDQTIN 193
            +      D   T ++++ ++                        QE W     L   + 
Sbjct: 447 SYS---ALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKME 503

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-----SSRCLEKLKTWLF---- 244
             G  VD      +  +   E+        +            +     +L+   F    
Sbjct: 504 SEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGIS 563

Query: 245 ---LETGLHLEDLTET-TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +  L  E L +     +V+   KK   +   +  +R+        K   
Sbjct: 564 NSCNDEDLPYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTA 616


>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1088

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 107/362 (29%), Gaps = 120/362 (33%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
           +  R H  L+ I T         P+             +R   IAS G  L+VAD   +E
Sbjct: 695 KDGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLE 753

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-----NVAPAQVTKD------------- 427
            R+LA +A  +   +AF  G D +  T    +      V   +V  +             
Sbjct: 754 LRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVP 813

Query: 428 --------QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                   +R   K++  ++ Y   A     ++    ++       V             
Sbjct: 814 LLKDAFASERRKAKMLNFSIAYGKTA---IGLSRDWKVSREEAQDTVN------------ 858

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                         W      V + W EL +  ++ I+ G  + 
Sbjct: 859 -----------------------------LWYNDRQEVRK-WQELRK--KEAIQKGYVLT 886

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              R      Y  + + N                   R+ +NT                 
Sbjct: 887 LLGRARKFPEYRSRAQKN----------------HIERAAINTP---------------- 914

Query: 600 NIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
             VQ  + D+    M+         + G+ ++L VHDE++ E P ++ E    ++ + M+
Sbjct: 915 --VQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMS 972

Query: 653 SN 654
             
Sbjct: 973 EP 974



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 109/353 (30%), Gaps = 79/353 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVMPQVLKEA-- 60
           ID +T +P+D        + E +C  ++      F D    +W  V       +L E   
Sbjct: 243 IDVKTETPVD--------HGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKP 294

Query: 61  -LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-------ARSNGLPSALKAV 112
             E++ +  V HN  F+  +++   N  I +  +    +        +R      +L+A+
Sbjct: 295 FFEDSSIKKVWHNYSFDNHIIR---NYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEAL 351

Query: 113 G---EALKLSSQKMEE---GKELIAR-FCKGETHECLYDRNK---P-------NHREAWR 155
               + L  +  K E    GK  + + F KG+  +   +      P         REAW 
Sbjct: 352 TSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWI 411

Query: 156 LFGEYCKGDVTVTREIFKRLEPLS------------------SKEQELW----YLDQTIN 193
            +      D   T ++++ ++                        QE W     L   + 
Sbjct: 412 SYS---ALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKME 468

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-----SSRCLEKLKTWLF---- 244
             G  VD      +  +   E+        +            +     +L+   F    
Sbjct: 469 SEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGIS 528

Query: 245 ---LETGLHLEDLTET-TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +  L  E L +     +V+   KK   +   +  +R+        K   
Sbjct: 529 NSCNDEDLPYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTA 581


>gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus]
          Length = 172

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
           DP+ LQ I   +R     ++   ++VAD + IE R+ A    +Q  + AF+ G DL+  T
Sbjct: 1   DPN-LQNIPTSLRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLDLHRFT 59

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSA 471
            +         +TK++R + K +   L Y    ++  + A S+ G+ ++     +     
Sbjct: 60  ASLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSSYGVEISLKEAQIFHEKF 119

Query: 472 PEEWEDAENFCRWMQENHPEH 492
            E ++  + +    +E    H
Sbjct: 120 FEHYKGFKKWHEETKEKLKNH 140


>gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 930

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 23/234 (9%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           L       G + TGR S      QNLPR       +   +         D D L      
Sbjct: 631 LHPNFLQEG-TDTGRLSCVEPNLQNLPRNG-----ITAAVAGNDAEEDGDDDLLG----- 679

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            R C +A+ G  L+  D   IE RVLA + G+   ++A  T  D++       F   P  
Sbjct: 680 FRRCFVAAGGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP-- 737

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V+ ++R++ K +   + Y  G    + +A+  G+ ++   H+           +A     
Sbjct: 738 VSTEERSLAKRVVFGVLYGAGP---KTLATHMGVTVDRALHI------TSLLTNAFPGID 788

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                  E A  + F+ T   R+ +      S V    +   +    ++  G A
Sbjct: 789 AYHRRVVEEARANGFVRTLSGRL-RYLPDIRSTVLSRRSYAERQAFNSVVQGSA 841


>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
          Length = 1033

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 140/478 (29%), Gaps = 79/478 (16%)

Query: 193  NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG-LHL 251
            ND G   +        +       KL   +E L   + + +         L    G +  
Sbjct: 594  NDEGIATEGK------KTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLRSLAGKIPT 647

Query: 252  EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
            + + +    +    +        Q   +      +A        +   +   +    +  
Sbjct: 648  DHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYG-TAYEAFGGGKKGREACHAIAALCEVF 706

Query: 312  GASRTGRWSGCVFPPQNLPRP---SRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
               +    SG + P Q         R H  L+ I T         P+             
Sbjct: 707  SIDKL--ISGFIVPLQGDRISCKEGRIHCSLN-INTETGRLSARTPNLQNQPALEKDRYK 763

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            +R   +A+ G  L+VAD   +E R+LA +   +  L+AF+ G D +  T    +      
Sbjct: 764  IRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDA 823

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            V +      KV               +     G +      L     A        NF  
Sbjct: 824  VEEK-----KV-------------LLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSI 865

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
               +     A+   +        K + R+      +LW    +      +  KA    K 
Sbjct: 866  AYGKT----AVGLSWDW------KVSVREARD-TLKLWYRDRKEVSAWQKKQKAFALEKC 914

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                L+   +   N+    P  +  V       R+ +N                    VQ
Sbjct: 915  EVYTLLGRSRQFPNMTHAGPGQKGHV------ERAAINAP------------------VQ 950

Query: 604  AVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
              + D+    M+   +       G+ ++L VHDE++ E P ++ E   +++   M+  
Sbjct: 951  GSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKP 1008


>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
          Length = 976

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 140/478 (29%), Gaps = 79/478 (16%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG-LHL 251
           ND G   +        +       KL   +E L   + + +         L    G +  
Sbjct: 537 NDEGIATEGK------KTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLRSLAGKIPT 590

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           + + +    +    +        Q   +      +A        +   +   +    +  
Sbjct: 591 DHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYG-TAYEAFGGGKKGREACHAIAALCEVF 649

Query: 312 GASRTGRWSGCVFPPQNLPRP---SRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
              +    SG + P Q         R H  L+ I T         P+             
Sbjct: 650 SIDKL--ISGFIVPLQGDRISCKEGRIHCSLN-INTETGRLSARTPNLQNQPVLEKDRYK 706

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A+ G  L+VAD   +E R+LA +   +  L+AF+ G D +  T    +      
Sbjct: 707 IRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDA 766

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V +      KV               +     G +      L     A        NF  
Sbjct: 767 VEEK-----KV-------------LLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSI 808

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              +     A+   +        K + R+      +LW    +      +  KA    K 
Sbjct: 809 AYGKT----AVGLSWDW------KVSVREARD-TLKLWYRDRKEVSAWQKKQKAFALEKC 857

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
               L+   +   N+    P  +  V       R+ +N                    VQ
Sbjct: 858 EVYTLLGRSRQFPNMTHAGPGQKGHV------ERAAINAP------------------VQ 893

Query: 604 AVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
             + D+    M+   +       G+ ++L VHDE++ E P ++ E   +++   M+  
Sbjct: 894 GSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKP 951


>gi|71660963|ref|XP_817509.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70882706|gb|EAN95658.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 924

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/408 (15%), Positives = 127/408 (31%), Gaps = 70/408 (17%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL-VSS 232
            L     +E+ +  L   +   G+ V+++              +L    + L   +   +
Sbjct: 455 LLPAFLKQEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFN 514

Query: 233 SRCLE----------KLKTWLFLETG-------LHLEDLTE-TTCQRVLSSNKKLTPQAI 274
            + L+          +L T L            L +    + +T +  L           
Sbjct: 515 MQNLDECRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLRLLAPHHELPR 574

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMN--------SDGRL-----------------RGTLQ 309
            +   R  A       +  +  A          +D R+                      
Sbjct: 575 LLIAYRKTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFV 634

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             G + TGR S      QNLPR     E  +           S+P   ++     R C  
Sbjct: 635 QEG-TDTGRLSCVEPNLQNLPRSKAIAENDN-----------SEPYEAEM--ATFRRCFA 680

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
              G  L+  D   IE RV+A ++ +   + A     D++       F  +P  V  ++R
Sbjct: 681 VPIGLTLLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VNVEER 738

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
            + K +   + Y  G    + +A+  G+ +    H++    A   +   E + R + +  
Sbjct: 739 TLAKRVVFGMLYGAGP---RTLATQMGVPMERALHVMSLFKAS--YPQIERYQRRVIDQC 793

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                 D F+ T   R+ ++    + RV        +    ++  G A
Sbjct: 794 RT----DGFVRTMTGRI-RSLPDINDRVMAKRMYAERQAFNSVIQGSA 836


>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
          Length = 1033

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 135/478 (28%), Gaps = 79/478 (16%)

Query: 193  NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG-LHL 251
            ND G   +        +       KL   +E L   + + +         L    G +  
Sbjct: 594  NDEGITTEGK------KTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLRSLAGKIPT 647

Query: 252  EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
              + +    +    +        Q   +      +A        +   +   +    +  
Sbjct: 648  NRIYKIDDGQEFDEDGSSLELPEQDIEDTSLYG-TAYEAFGGGNKGREACHAIAALCEVF 706

Query: 312  GASRTGRWSGCVFPPQNLPRP---SRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
               +    SG + P Q         R H  L+ I T         P+             
Sbjct: 707  SIDKL--ISGFIVPLQGDRISCKEGRIHCSLN-INTETGRLSARTPNLQNQPALEKDRYK 763

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            +R   +A+ G  L+VAD   +E R+LA +   +  L+AF+ G D +  T    +      
Sbjct: 764  IRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDA 823

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            V +      KV               +     G        L     A        NF  
Sbjct: 824  VEEK-----KV-------------LLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSI 865

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
               +     + +            K W +    VS  W           +  KA    K 
Sbjct: 866  AYGKTAVGLSWDWKVEVREARDTLKLWYRDRKEVSA-WQ----------KKQKAFALEKC 914

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                L+   +   N+    P  +  V       R+ +N                    VQ
Sbjct: 915  EVYTLLGRSRQFPNMTHAGPGQKGHV------ERAAINAP------------------VQ 950

Query: 604  AVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
              + D+    M+   +       G+ ++L VHDE++ E P ++ E   +++   M+  
Sbjct: 951  GSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKP 1008


>gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 808

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 185/687 (26%), Gaps = 155/687 (22%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             +N  V  +A N  FE           +                 P  +      +   
Sbjct: 189 LFKNEKVLKIAVNLSFETKYAAKYGKYILGK------------VADPLIMWVRCLQIAAP 236

Query: 120 SQKMEEGKELIARFCKGETHEC----------LYDRNKPNHREAWRLFGE----YCKGDV 165
            +     K       K  T E           L  + K +  +           Y   D 
Sbjct: 237 QKINNPKKPTSGWGLKPATKEIFGVTMNDFSALLKKYKVDFFDEIDASKGEGLLYSAEDA 296

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV-----------DVALAHTLNQIVDVE 214
               + ++    ++S+  +       I      V           D  LA    Q  ++ 
Sbjct: 297 DYALQHYEYWSQIASQIPQYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIM 356

Query: 215 RTKLDQELESLTY---------GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
           + +  + ++ +           G    +  ++ L    F    + +    +T       +
Sbjct: 357 QEQAAERIKQVAKETFNVDINTGKSGKTNEVKSLM---FDYLKIPVAKYGKTGASLDQEA 413

Query: 266 N--------------------------------KKLTPQAIQVFNNRMRASRSAVLKLN- 292
                                                P   ++    +R ++        
Sbjct: 414 LIDMAFMLENKLNDIDEEKYLSIPLPENWEIIDPDKDPTLDKLERGAIRIAKREPHPYKE 473

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             +E ++   +++     L +   GR     F         R H       T      + 
Sbjct: 474 QALEVIDQLKKIQKYTTLLSSHIVGREKYLNF------MSGRIHAGYSP-FTETGRLNSF 526

Query: 353 DPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   +         +R+  +   GK L   D +G E R++AW +G++   + F TG D
Sbjct: 527 NPNGQNVPRPDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGD 586

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T +        ++ K +R   K     + Y G   A Q    T  +   T     +
Sbjct: 587 MHRRTASVMTGKPEDEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQ 646

Query: 468 T-NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             N+    ++    + R +     E        G    R+       + R     +   Q
Sbjct: 647 IVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYM--RLLPGINSANRRDRG--SAERQ 702

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
           A    ++   A I +K ++     + K +  L                            
Sbjct: 703 AANTPVQGSAADIMKKVQNEIYESIGKQEGVL---------------------------- 734

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                 +G           S D++A       +   +I+  + D+     P+        
Sbjct: 735 -----AHG-----------SADMIA-------QIHDEIIFEIDDD-----PEIVVAAEKQ 766

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M   P     +P++AEG    R+
Sbjct: 767 IKQVMEQPPVPGFPVPIEAEGSVGYRW 793


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 110/358 (30%), Gaps = 94/358 (26%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385
            +  R H  L+ I T         P+             +R   +AS G  LVVAD   +E
Sbjct: 745  KDGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQLE 803

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ----------------- 428
             R+LA + G +  ++AF+ G D +  T    +      V   Q                 
Sbjct: 804  LRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPVP 863

Query: 429  ---------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                     R   K++  ++ Y   A     ++    ++       V        W +  
Sbjct: 864  LLKDAFGSERRKAKMLNFSIAYGKTA---VGLSRDWKVSTKEAQETVD------LWYNDR 914

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
               R  QE   + AIED ++ T   R ++ +    SR     N + +A   T   G A  
Sbjct: 915  QEVRKWQEMRKKEAIEDGYVLTLLGRSRR-FPASKSRAQR--NHIQRAAINTPVQGSAAD 971

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                  + +                               +N   ++L            
Sbjct: 972  VAMCAMLEIS------------------------------INQQLKKLGW---------- 991

Query: 600  NIVQAVSRDILAEGMMN--ATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
                   R +L   +++   +  G      +HDE++ E P ++ E    ++   M+  
Sbjct: 992  -------RLLLQWSLLDWKLSNKGNLYWKQIHDEVILEGPIESAEIAKDIVVDCMSKP 1042



 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 96/327 (29%), Gaps = 76/327 (23%)

Query: 32  LFAFG--------FDDHPVELWDCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVL 80
           L  F         F +    +W  V      +VL E     E++ +  V HN  F+  ++
Sbjct: 311 LICFSIYCGPEADFGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHII 370

Query: 81  KACFNLDIPIHRWICTLVL-------ARSNGLPSALKAVG---EALKLSSQKMEE---GK 127
           +   N  I I  +    +        AR      +L+A+    + L  +  K E    GK
Sbjct: 371 R---NHGIEISGFHADTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGK 427

Query: 128 ELI-----ARFCKGETHECLYDRNKP------NHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +      R  K +  E       P        REAW  +      D   T ++++ + 
Sbjct: 428 ISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDREAWISYS---ALDAISTLKLYESMT 484

Query: 177 P------------------LSSKEQELW----YLDQTINDRGYCVDVALAHTLNQIVDVE 214
                              +     E W     L   +   G  VD      + ++   E
Sbjct: 485 KKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAE 544

Query: 215 RTKLDQELESLTYGLVS-----SSRCLEKLKTWLFLETG-------LHLEDLTET-TCQR 261
           +        +            +     +L+   F           L +E L +     +
Sbjct: 545 QQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGISNSSHDEVLPVEKLFKVPNIDK 604

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAV 288
           V+   KK   +   +  +R+  S  + 
Sbjct: 605 VIEEGKKTPTKFRNIKLHRISDSPLST 631


>gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 940

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 106/351 (30%), Gaps = 75/351 (21%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEAR 387
            R H  L  + T         P+     S       +R    A  G  L+V D + +E R
Sbjct: 636 GRIHPSLA-LDTTTGRLCCRKPNLQNPPSAHNDLYSIRKAFSARPGNTLIVGDYSQLELR 694

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA M+  +  ++    G D++       F      V                   G+  
Sbjct: 695 ILAHMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAV-----------------ANGSVV 737

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                +  G+       +    S   +     NF     +     A E     T    + 
Sbjct: 738 IDDAEAHPGI-----PSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMF 792

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             W      V     E+ Q    T ++  +++ R RR   + +  +          SGRS
Sbjct: 793 TRWNNSKKGVERWKAEIIQQARDT-QHATSVLGRHRRFPHIKHRLRKY--------SGRS 843

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621
                    R+ +N                   ++Q  + DI    M+   +       G
Sbjct: 844 --------ERAAVNF------------------VIQGSAADIAMMAMLRVDRDERLRRMG 877

Query: 622 YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN-----PSWAKGLPLKAE 666
           + IV+ VHDE++ E P +       ++  LM        P +   + L  +
Sbjct: 878 FKIVMQVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVD 928


>gi|71668117|ref|XP_820999.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70886365|gb|EAN99148.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/408 (15%), Positives = 127/408 (31%), Gaps = 70/408 (17%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL-VSS 232
            L     +E+ +  L   +   G+ V ++              +L    + L   +   +
Sbjct: 458 LLPAFLKQEKRISLLCAAMKLNGFPVKLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFN 517

Query: 233 SRCLE----------KLKTWLFLETG-------LHLEDLTE-TTCQRVLSSNKKLTPQAI 274
            + LE          +L T L            L +    + +T +  L           
Sbjct: 518 MQNLEECRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPR 577

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMN--------SDGRL-----------------RGTLQ 309
            +   R  A       +  +  A          +D R+                      
Sbjct: 578 LLIAYRKTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGECSDKKDDTPVKWVTLHPNFV 637

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             G + TGR S      QNLPR     +  +           S+P   ++     R C  
Sbjct: 638 QEG-TDTGRLSCVEPNLQNLPRSKVIADNDN-----------SEPYEAEM--ATFRRCFA 683

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
              G  L+  D   IE RV+A ++ +   + A     D++       F  +P  V+ ++R
Sbjct: 684 VPIGLTLLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VSVEER 741

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
            + K +   + Y  G    + +A+  G+ +    H++    A   +   E + R + +  
Sbjct: 742 TLAKRVVFGMLYGAGP---RTLATQMGVPMERALHVMSLFKAS--YPQIERYQRRVIDQC 796

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                 D F+ T   R+ ++    + RV        +    ++  G A
Sbjct: 797 RT----DGFVRTMTGRI-RSLPDINDRVMAKRMYAERQAFNSVIQGSA 839


>gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
 gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
          Length = 808

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 88/682 (12%), Positives = 186/682 (27%), Gaps = 145/682 (21%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             +N  V  +A N  FE           +                 P  +      +   
Sbjct: 189 LFKNEKVLKIAVNLSFETKYAAKYGKYILGK------------VADPLIMWVRCLQIAAP 236

Query: 120 SQKMEEGKELIARFCKGETHEC----------LYDRNKPNHREAWRLFGE----YCKGDV 165
            +     K       K  T             L  + K +  +           Y   D 
Sbjct: 237 QKINNPKKPTSGWGLKPATKHIFGVTMNDFAALLKKYKVDFFDEIDASKGEGLLYSAEDA 296

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV-----------DVALAHTLNQIVDVE 214
               + ++    ++++          I      V           D  LA    Q  ++ 
Sbjct: 297 DYALQHYEYWSQIAAQIPRYEDWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIM 356

Query: 215 RTKLDQELESLTY---------GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
           + +  + ++ +           G    +  ++ L    F    + +    +T       +
Sbjct: 357 QEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLM---FDYLKIPVAKYGKTGASLDQEA 413

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD----------GRLR------GTLQ 309
              +        N+       ++  L    E+++ D          G +R         +
Sbjct: 414 LIDMAFMLENKLNDIDEEKYLSIS-LPENWESIDPDKDPTLDKLERGAIRIAKREPHPYK 472

Query: 310 FLGASRTGRW-----SGCVFPPQNLPR-------PSRSHEELDQIITHLPTSITSDPDPL 357
                   +         +     + R         R H       T      + +P+  
Sbjct: 473 EQALEVIDQLKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSP-FTETGRLNSFNPNGQ 531

Query: 358 QIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
            +         +R+  +   GK L   D +G E R++AW +G++  ++ F TG D++  T
Sbjct: 532 NVPRPDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRT 591

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSA 471
            +     + A++ K +R   K     + Y G   A Q    T  +   T     +  N+ 
Sbjct: 592 ASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAV 651

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              ++    + R +     E        G    R+       + R     +   QA    
Sbjct: 652 KTAYKRIPEYQRKIVLEAREQGYVQTIYGYM--RLLPGINSANRRDRG--SAERQAANTP 707

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
           ++   A I +K ++     + K +  L                                 
Sbjct: 708 VQGSAADIMKKVQNEIYESIGKQEGVL--------------------------------- 734

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
            +G           S D++A       +   +I+  + D+     P+        +  +M
Sbjct: 735 AHG-----------SADMIA-------QIHDEIIFEIDDD-----PEIVVAVEKQIKQVM 771

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
              P     +P++AEG    R+
Sbjct: 772 EQPPVPGFPVPIEAEGSVGYRW 793


>gi|309810195|ref|ZP_07704040.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169467|gb|EFO71515.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 681

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 111/350 (31%), Gaps = 46/350 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ LE+ ++     +       L+    L I +      ++LA               L
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             S Q+     + I    KG+    +       H        +  K  +    +  ++L 
Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  +  +   +   G  V       +   +DV  T L  ++  L  G   +    
Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538

Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF +  L     T+T       VL   +  +P    + + R   S+     +N 
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L++ + +DG++                               H    Q +T      + +
Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626

Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQW 397
           P+   I         +R   +  +    L   D + +E RVLA ++ E+ 
Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKN 676


>gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50]
          Length = 665

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 111/366 (30%), Gaps = 82/366 (22%)

Query: 7   DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           D ET S  +++          + G+  Y      I  A  + D P    D +      ++
Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114
           LK  LE+     V  N  ++R +L    N  I +       +L     N +         
Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K    +E+  +     T   +          A    G Y   D  VT ++  +
Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +  G   +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 629

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                                         + G ++         P    P+  R H   
Sbjct: 630 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 659

Query: 340 DQIITH 345
            Q +T 
Sbjct: 660 HQAVTA 665


>gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
 gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
          Length = 808

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 91/687 (13%), Positives = 187/687 (27%), Gaps = 155/687 (22%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             +N  V  +A N  FE           +                 P  +      +   
Sbjct: 189 LFKNEKVLKIAVNLSFETKYAAKYGKYILGK------------VADPLIMWVRCLQIAAP 236

Query: 120 SQKMEEGKELIARFCKGETHEC----------LYDRNKPNHREAWRLFGE----YCKGDV 165
            +     K       K  T             L  + K N  +           Y   D 
Sbjct: 237 QKINNPKKPTSGWGLKPATKHIFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDS 296

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVE 214
               + ++    ++++          I              G   D  LA    Q  ++ 
Sbjct: 297 DYAVQHYEYWSQIAAQIPRYEEWLHKIEMSFTRAIGLMEYWGMNWDPNLATQKKQEAEIM 356

Query: 215 RTKLDQELESLTY---------GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
           + +  + ++ +           G    +  ++ L    F    + +    +T       +
Sbjct: 357 QEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLM---FDYLKIPIAKYGKTGASLDQEA 413

Query: 266 N----------------------------KKLTPQAIQVFNNRMR-----ASRSAVLKLN 292
                                        + + P+     +   R     A R       
Sbjct: 414 LIDMAFMLENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKE 473

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             +E ++   +++     L +   GR     F         R H       T      + 
Sbjct: 474 QALEVIDQLKKIQKYTTLLSSHIIGREKYLNF------MSGRIHAGYSP-FTETGRLNSF 526

Query: 353 DPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
           +P+   +         +R+  +   GK L   D +G E R++AW +G++  ++ F TG D
Sbjct: 527 NPNGQNVPRPDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGD 586

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T +     + A++ K +R   K     + Y G   A Q    T  +   T     +
Sbjct: 587 MHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQ 646

Query: 468 T-NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             N+    ++    + R +     E        G    R+       + R     +   Q
Sbjct: 647 IVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYM--RLLPGINSANRRDRG--SAERQ 702

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
           A    ++   A I +K ++     + K +  L                            
Sbjct: 703 AANTPVQGSAADIMKKVQNEIYESIGKQEGVL---------------------------- 734

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                 +G           S D++A       +   +I+  + D+     P+        
Sbjct: 735 -----AHG-----------SADMIA-------QIHDEIIFEIDDD-----PEIVVAVEKQ 766

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M   P     +P++AEG    R+
Sbjct: 767 IKQVMEQPPVPGFPVPIEAEGSVGYRW 793


>gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 607

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/546 (14%), Positives = 160/546 (29%), Gaps = 122/546 (22%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY---------G 228
           L   E     +   +   G   D  LA    Q  ++ + +  + ++ +           G
Sbjct: 119 LHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNIDINTG 178

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK-------------------- 268
               +  ++ L    F    + +    +T       +                       
Sbjct: 179 KSGKTNEVKSLM---FDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYLGV 235

Query: 269 --------LTPQAIQVFNNRMR-----ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                   + P+     +   R     A R         +E ++   +++     L +  
Sbjct: 236 SLPENWGNIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSSHI 295

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIA 370
            GR     F         R H       T      + +P+   +         +R+  + 
Sbjct: 296 IGREKYLNF------MSGRIHAGYSP-FTETGRLNSFNPNGQNVPRPDNDEFKIRNFFVP 348

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             GK L   D +G E R++AW +G++  ++ F TG D++  T +     + A++ K +R 
Sbjct: 349 KPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERT 408

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSAPEEWEDAENFCRWMQENH 489
             K     + Y G   A Q    T  +   T     +  N+    ++    + R +    
Sbjct: 409 DAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEA 468

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            E        G    R+       + R     +   QA    ++   A I +K ++    
Sbjct: 469 REQGYVQTIYGYM--RLLPGINSANRRDRG--SAERQAANTPVQGSAADIMKKVQNEIYE 524

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
            + K +  L                                 ++G           S D+
Sbjct: 525 SIGKQEGVL---------------------------------SHG-----------SADM 540

Query: 610 LAEGMMNATKAGYDIVLTVHD--EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667
           +A       +   +I+  + D  EIV             +  +M   P     +P++AEG
Sbjct: 541 IA-------QIHDEIIFEIDDDPEIVVAV-------EKQIKQVMEQPPVPGFPVPIEAEG 586

Query: 668 YESKRY 673
               R+
Sbjct: 587 SVGYRW 592


>gi|74228402|dbj|BAE24040.1| unnamed protein product [Mus musculus]
          Length = 299

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 101/294 (34%), Gaps = 48/294 (16%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            S  +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A    +
Sbjct: 19  FSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMI 78

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
            P  V  D R   K +   + Y  GA   + +    G+  N  A  + +  +   ++   
Sbjct: 79  EPDAVGDDLRQHAKQICYGIIYGMGA---KSLGEQMGIKENDAASYIDSFKSR--YKGIN 133

Query: 480 NFCRWMQENHPEHAIEDLFIG--TACERVKKA--WRQKHSRVSELWNELHQAFEQTIENG 535
           +F R   +N  ++   +  +G       +K    + + H+    +   +  +    ++  
Sbjct: 134 HFMRDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIA 193

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              I ++       +  K   +   ML + R+ +                          
Sbjct: 194 TVNIQKQLETFRSTF--KSHGHRESMLQNDRTGLLPKRKLK------------------- 232

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                            GM    + G+ I L +HDE++ E  + D    + +  
Sbjct: 233 -----------------GMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVK 268


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/439 (15%), Positives = 126/439 (28%), Gaps = 126/439 (28%)

Query: 256  ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            ET     L++N ++  Q  +V         SA        + + +   +    +      
Sbjct: 775  ETRIDEALATNNEVPSQEPEVSIY-----GSAYNAFGGGQKGIEACHAIAALCEMCSIDS 829

Query: 316  TGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369
                       Q++     R H  L+ I T         P+             +R   +
Sbjct: 830  LISNFILPLQGQDVSGENGRIHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFV 888

Query: 370  ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---- 425
            A++G  L+VAD   +E R+LA +A  +  L AF+ G D +  T    +      V     
Sbjct: 889  AAQGNSLIVADYGQLELRILAHLANRKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGEV 948

Query: 426  ----------------------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
                                    +R   K++  ++ Y    K    +A    +++    
Sbjct: 949  LLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYG---KTTIGLARDWKVSVKEAK 1005

Query: 464  HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
              V                RW  +                      W             
Sbjct: 1006 ETVD---------------RWYSDRKE----------------VSDW------------- 1021

Query: 524  LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL-VYRDVGNNRSYLNT 582
                     +  +   AR+ R V  +  +          PS ++          R+ +NT
Sbjct: 1022 ---------QEQRKFEAREFRRVHTLLGR------ARWFPSVKNATGSVKGHIERAAINT 1066

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCET 636
                               VQ  + D+    M+         + G+ ++L VHDE++ E 
Sbjct: 1067 P------------------VQGSAADVAMCAMLEISKNARLEELGWKLLLQVHDEVILEG 1108

Query: 637  PDTDEFNA-SMLYHLMTSN 654
            P+  E  A +++   M+  
Sbjct: 1109 PEESENEAMAIVVDCMSKP 1127


>gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis]
 gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis]
          Length = 2086

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 158/478 (33%), Gaps = 99/478 (20%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G+         L Q +     KL+ ++  L +G   +    + +
Sbjct: 1679 ELEMPIQMSLCNMECLGFPAQEQRLQRLLQQMLATMKKLEVKIFEL-HGSRFNLGSTQAV 1737

Query: 240  KTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L    GLH +     +T +++L      +P +  + ++R       + K    +   
Sbjct: 1738 AKVL----GLHRKANGRISTSRQILEKLD--SPISQLILDHRKL--SMVLAKNMQPLLKC 1789

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                R+ G      A  TGR S      QN+ +        ++I                
Sbjct: 1790 CQANRVHGQSITYTA--TGRISMSEPNLQNVAKDFLVDLGQEKI---------------- 1831

Query: 359  IISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
             IS   RS  ++S E   L+ AD   +E R+LA ++ ++  LK   + +DL+    A   
Sbjct: 1832 NIS--CRSAFVSSNEKHCLLSADFCQLEMRILAHLSQDKALLKVMNSPQDLFTAIAAHWN 1889

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             +A + V++  R   K +   + Y  G    + +A +          +       E++  
Sbjct: 1890 KIAESDVSEQLRNGTKQICYGIVYGMG---MRSLAESLKCTEQEAQMI------SEQFHL 1940

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH-QAFEQTIENGK 536
            A    +       + A  + ++ T   R ++     +S   +L N+   QA   TI+   
Sbjct: 1941 AYAGIKAYASKVVKFARNNGYVETITGR-RRYLDHINSGEPQLKNQAERQAINSTIQGSA 1999

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            A IA+                L +          +++   R  L                
Sbjct: 2000 ADIAK-------------SAILRME---------KNIARYREKLG--------------- 2022

Query: 597  LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654
            L EN V                    ++VL +HDE++ E P       + +  L   N
Sbjct: 2023 LAENAV--------------------NLVLHLHDELIFEVPADKAKKVAKVLSLTMEN 2060


>gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti]
 gi|108878374|gb|EAT42599.1| DNA polymerase theta [Aedes aegypti]
          Length = 1987

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 84/498 (16%), Positives = 157/498 (31%), Gaps = 100/498 (20%)

Query: 172  FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             + L     +E  +      +   G+  D      L + + V + ++ + + +L  G   
Sbjct: 1570 QEMLPTFVQREMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVRTLNGGRRL 1629

Query: 232  SSRCLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     ++   L     +  E      TC++VL      +P A  V   R   S  +   
Sbjct: 1630 NFASTSEVAAALK----VPRERNGRVKTCRQVLEKID--SPLATLVIAYRKIESNLSRT- 1682

Query: 291  LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            +  L  A+    R+ G       + TGR S      Q                T +    
Sbjct: 1683 IEPLYRAIRDGKRIYG--NSYCFTSTGRISMHEPNLQ----------------TVVKDFK 1724

Query: 351  TS-DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
               DP  +++ S C  +   +S  + L+ AD   +E  VL  ++ ++  L     G+D++
Sbjct: 1725 VEIDPGHVEVFS-CRSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGGKDVF 1783

Query: 410  VTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
                A+   +     V+ + R   K +   + Y  GA   + MA+   ++ +    L+  
Sbjct: 1784 RGIAAKWNRIEDEALVSDELRNYTKAIVYGVIYGMGA---KSMAAELNVDEDMACTLM-- 1838

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                E++       R   +   +   E  +I T   R ++     HS   +  +E  +  
Sbjct: 1839 ----EQFHSTYPEIRRYADKVIQVTRERGYIETLTGR-RRYLPAIHSTDMKKRSEAERQA 1893

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
              T   G A    K                                      N   R + 
Sbjct: 1894 VCTTVQGSAADILK--------------------------------------NAILRMMR 1915

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP-DTDEFNASML 647
                Y   L                     +   ++VL +HDE++ E P D     A +L
Sbjct: 1916 NLRKYRQTL------------------RLGQV--ELVLHMHDELIFEVPRDQSRKVAKIL 1955

Query: 648  YHLMTSNPSWAKGLPLKA 665
               M +       LPL+ 
Sbjct: 1956 KSSMENCAK--LSLPLRV 1971


>gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1257

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 23/234 (9%)

Query: 304  LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            L       G + TGR S      QNLPR       +   +         + D L      
Sbjct: 958  LHPNFLQEG-TDTGRLSCVEPNLQNLPRNG-----IAAAVAGNDAEEDGEEDLLG----- 1006

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
             R C +A+ G  L+  D   IE RVLA + G+   + A  T  D++       F   P  
Sbjct: 1007 FRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP-- 1064

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            V+ ++R++ K +   + Y  G    + +A+  G+ ++   H+           +A     
Sbjct: 1065 VSTEERSLAKRVVFGVLYGAGP---KTLATHMGVTVDRALHI------TSLLTNAFPGID 1115

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                   E A  + F+ T   R+ +      S V    +   +    ++  G A
Sbjct: 1116 AYHRRVIEEARANGFVRTLSGRL-RYLPDIRSTVLSRRSYAERQAFNSVVQGSA 1168


>gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum]
 gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            infantum JPCM5]
          Length = 1257

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 23/234 (9%)

Query: 304  LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            L       G + TGR S      QNLPR       +   +         + D L      
Sbjct: 958  LHPNFLQEG-TDTGRLSCVEPNLQNLPRNG-----IAAAVAGNDAEEDGEEDLLG----- 1006

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
             R C +A+ G  L+  D   IE RVLA + G+   + A  T  D++       F   P  
Sbjct: 1007 FRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP-- 1064

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            V+ ++R++ K +   + Y  G    + +A+  G+ ++   H+           +A     
Sbjct: 1065 VSTEERSLAKRVVFGVLYGAGP---KTLATHMGVTVDRALHI------TSLLTNAFPGID 1115

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                   E A  + F+ T   R+ +      S V    +   +    ++  G A
Sbjct: 1116 AYHRRVIEEARANGFVRTLSGRL-RYLPDIRSTVLSRRSYAERQAFNSVVQGSA 1168


>gi|326426432|gb|EGD72002.1| hypothetical protein PTSG_00018 [Salpingoeca sp. ATCC 50818]
          Length = 830

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 85/597 (14%), Positives = 165/597 (27%), Gaps = 171/597 (28%)

Query: 94  ICTLVLARSNGLPSALKAVGEALKL-SSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
             T V A       A   + +  +L   + +  G   +       + + L+     +   
Sbjct: 325 RDTQVAAWLADPERAWDDMDDVFRLCQLRPVTRGAGDLGDSSASASSQWLHKLASRHAAA 384

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
              LF      D     E++ RL      E    +L   +   G  +D          + 
Sbjct: 385 FDHLFARLRACD---QAELYSRL------EAPAIWLLAEMQVHGIHIDTETLKQQRVQIQ 435

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH--LEDLTETTCQRVLSSNKKLT 270
               +L+   E+L  G         +L+ +L+ +  LH  + +   T   ++ +    LT
Sbjct: 436 QCLAELEARAEAL-VGFKLLLTSPLQLREYLYDQLQLHVGIPNFPRTPKGKLSTGEDALT 494

Query: 271 -PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
             +      N +   R A   L T ++ +                              L
Sbjct: 495 LIKDRHELPNLLLLHRRAARLLCTYIDGV------------------------------L 524

Query: 330 PR--PSRSHEELDQIITHLPTSITSDPDPLQIISDCV-----------RSCVIASEGKKL 376
           P       H E  Q            P+   +                R+  +A  G   
Sbjct: 525 PHVTHGMLHPEWLQTSAASGRVSCQQPNIQSVPLRETALRLDLLVVSPRAAYVAPGGCVY 584

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGE-----------------------DLYVTTY 413
           V  D   +E R+LA  + ++  +  F+  E                       D +    
Sbjct: 585 VSLDWRQMELRLLAHFSEDEGLIALFQNQEAKAKANTPPSTANATSREEGGTSDPFKALA 644

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           ++ F V   QVT  QR   K    A  Y  GA     ++    ++++             
Sbjct: 645 SKWFCVPVEQVTGRQRDQVKRCLYAFIYGSGA---LHLSKVLEVSVHEAK---------- 691

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                          ++ +A+R++H R+  L +++    ++T  
Sbjct: 692 -------------------------------KLLQAFRRRHPRIQHLRDQVLIRLKET-- 718

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
              + ++R+RR          +      L                               
Sbjct: 719 GFVSCLSRRRRYFKDSANDHSQRAAFNFL------------------------------- 747

Query: 594 GGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
                   +Q  + DI    M      + A +    +V  +HDEI+ E P+ +    
Sbjct: 748 --------LQGSAADICKAAMINLREFLRAKQMRSFMVAQLHDEIILECPEKEAKEV 796


>gi|170592393|ref|XP_001900953.1| DNA polymerase I family protein [Brugia malayi]
 gi|158591648|gb|EDP30253.1| DNA polymerase I family protein [Brugia malayi]
          Length = 475

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 133/381 (34%), Gaps = 47/381 (12%)

Query: 169 REIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                RL  + S E EL    L   I   G   D   A TLN  +  + T+++ +   ++
Sbjct: 59  MSAAVRLSSIKSVELELKSVVLFSEIEITGIAFDRNKALTLNSKLQQKLTEIEAKAYGIS 118

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
            G+  +     ++   LF+   +   + +     +T + VL       P    +   R R
Sbjct: 119 -GIPFNFGSAAEISQILFVRLQIPPPNASTGRHYSTNKIVLQQLAPKYPIISLILEWR-R 176

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            + +    L  L++   SDGR+R    F+    TGR        QN+ + +         
Sbjct: 177 INTALTTSLPILLKLCCSDGRIRA--NFITHCCTGRVLTVHPNVQNVQKDAIID------ 228

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +RS  I  +G+ L+ +D   +E R+LA ++ +   +  F
Sbjct: 229 ------------------GFSIRSLFIVPKGRILLSSDYRQLEMRMLAHLSADPNLISLF 270

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            T +D +       +N       K  R   K +   + Y  GA +        G++    
Sbjct: 271 LTKDDFFEII-TNKWNKNETLHIKVDRNKVKQLCYGIIYGMGAISLS---KELGISKQHA 326

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV--SEL 520
             ++   S  + +     +   +      +     F+ T   R ++   Q  S V  +EL
Sbjct: 327 QQMI--ISFFQLFPKVRTWMDKILAMCRTNG----FVSTLLGR-RRFLPQITSAVLQTEL 379

Query: 521 WNELHQAFEQTIENGKAIIAR 541
                QA    I+   A + +
Sbjct: 380 AQAERQAINTCIQGSVAELFK 400



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 74/221 (33%), Gaps = 21/221 (9%)

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                       +M     L+ +   +L+      +++ +     +W +       ++  
Sbjct: 241 GRILLSSDYRQLEMRMLAHLSAD--PNLISLFLTKDDFFEIIT-NKWNKNETLHIKVDRN 297

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV-PLVYMKKDKN 556
            +   C  +          +S+      Q  +Q I +   +  + R  +  ++ M +   
Sbjct: 298 KVKQLCYGIIYGMGAIS--LSKELGISKQHAQQMIISFFQLFPKVRTWMDKILAMCRTNG 355

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
            +  +L   R L         + L T   Q  R+           +Q    ++    ++N
Sbjct: 356 FVSTLLGRRRFL----PQITSAVLQTELAQAERQ------AINTCIQGSVAELFKMALLN 405

Query: 617 ATK----AGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMT 652
             K        IV+ +HDE++ ET ++   +   ++ H MT
Sbjct: 406 LRKNLLGTNSSIVMQLHDEVLIETDESSIASIVEIIKHSMT 446


>gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
 gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
          Length = 808

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 97/680 (14%), Positives = 194/680 (28%), Gaps = 141/680 (20%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRW-ICTLVLARSNGLPSALKAVG 113
             +N  V  +A N  FE           +     P+  W  C  + A            G
Sbjct: 189 LFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKKPTSG 248

Query: 114 EALKLSSQK-----MEEGKELIARFCKGETHECLYDRN-----KPNHREAWRLFGEYCKG 163
             LK +++      M +   L+ ++      E    +           +      EY   
Sbjct: 249 WGLKPATKHIFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQ 308

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                    + L  +   E     +   +   G   D  LA    Q  ++ + +  + ++
Sbjct: 309 IAAQISRYEEWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIK 365

Query: 224 SLTY---------GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-------- 266
            +           G    +  ++ L    F    + +    +T       +         
Sbjct: 366 QIAKETFNIDINTGKSGKTNEVKSLM---FDYLKIPIAKYGKTGASLDQEALIDMAFMLE 422

Query: 267 --------------------KKLTPQAIQVFNNRMR-----ASRSAVLKLNTLVEAMNSD 301
                               + + P+     +   R     A R         +E ++  
Sbjct: 423 NKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQL 482

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            +++     L +   GR     F         R H       T      + +P+   +  
Sbjct: 483 KKIQKYTTLLSSHIIGREKYLNF------MSGRIHAGYSP-FTETGRLNSFNPNGQNVPR 535

Query: 362 D-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R+  +   GK L   D +G E R++AW +G++   + F TG D++  T +  
Sbjct: 536 PDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVM 595

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSAPEEW 475
              + A++ K +R   K     + Y G   A Q    T  +   T     +  N+    +
Sbjct: 596 TGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAY 655

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
           +    + R +     E        G    R+       + R     +   QA    ++  
Sbjct: 656 KRIPEYQRKIVLEAREQGYVQTIYGYM--RLLPGINSANRRDRG--SAERQAANTPVQGS 711

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
            A I +K ++     + K +  L                                 ++G 
Sbjct: 712 AADIMKKVQNEIYESIGKQEGVL---------------------------------SHG- 737

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD--EIVCETPDTDEFNASMLYHLMTS 653
                     S D++A       +   +I+  + D  EIV             +  +M  
Sbjct: 738 ----------SADMIA-------QIHDEIIFEIDDDPEIVVAV-------EKQIKQVMEQ 773

Query: 654 NPSWAKGLPLKAEGYESKRY 673
            P     +P++AEG    R+
Sbjct: 774 PPVPGFPVPIEAEGSVGYRW 793


>gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51]
 gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51]
          Length = 802

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 95/678 (14%), Positives = 194/678 (28%), Gaps = 137/678 (20%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRW-ICTLVLARSNGLPSALKAVG 113
             +N  V  +A N  FE           +     P+  W  C  + A            G
Sbjct: 183 LFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKKPTSG 242

Query: 114 EALKLSSQK-----MEEGKELIARFCKGETHECLYDRN-----KPNHREAWRLFGEYCKG 163
             LK +++      M +   L+ ++      E    +           +      EY   
Sbjct: 243 WGLKPATKHIFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQ 302

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                    + L  +   E     +   +   G   D  LA    Q  ++ + +  + ++
Sbjct: 303 IAAQISRYEEWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIK 359

Query: 224 SLTY---------GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-------- 266
            +           G    +  ++ L    F    + +    +T       +         
Sbjct: 360 QIAKETFNIDINTGKSGKTNEVKSLM---FDYLKIPIAKYGKTGASLDQEALIDMAFMLE 416

Query: 267 --------------------KKLTPQAIQVFNNRMR-----ASRSAVLKLNTLVEAMNSD 301
                               + + P+     +   R     A R         +E ++  
Sbjct: 417 NKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQL 476

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            +++     L +   GR     F         R H       T      + +P+   +  
Sbjct: 477 KKIQKYTTLLSSHIIGREKYLNF------MSGRIHAGYSP-FTETGRLNSFNPNGQNVPR 529

Query: 362 D-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R+  +   GK L   D +G E R++AW +G++   + F TG D++  T +  
Sbjct: 530 PDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVM 589

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSAPEEW 475
              + A++ K +R   K     + Y G   A Q    T  +   T     +  N+    +
Sbjct: 590 TGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAY 649

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
           +    + R +     E        G    R+       + R     +   QA    ++  
Sbjct: 650 KRIPEYQRKIVLEAREQGYVQTIYGYM--RLLPGINSANRRDRG--SAERQAANTPVQGS 705

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
            A I +K ++     + K +  L                                 ++G 
Sbjct: 706 AADIMKKVQNEIYESIGKQEGVL---------------------------------SHG- 731

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655
                     S D++A       +   +I+  + D+     P+        +  +M   P
Sbjct: 732 ----------SADMIA-------QIHDEIIFEIDDD-----PEIVVAVEKQIKQVMEQPP 769

Query: 656 SWAKGLPLKAEGYESKRY 673
                +P++AEG    R+
Sbjct: 770 VPGFPVPIEAEGSVGYRW 787


>gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis]
 gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis]
          Length = 2154

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 184/694 (26%), Gaps = 170/694 (24%)

Query: 29   CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD--------------------VTI 68
             +   A  +++ P+   +   D + P   K  L   +                    V  
Sbjct: 1506 EIHGMAICWENSPIYYVNLPKDLLCPDNQKYVLRPENWLEIVRHRWNRIGKIMGKREVIK 1565

Query: 69   VAHNSYFERTVLKACF------------NLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               N   +  VLK                 D+ +     + +      +   +     A 
Sbjct: 1566 FTWNLKIQIQVLKNAVVSIHRFGSTNLSGKDLDLELIDSSHLPLPQINVTEGIDMCIVAW 1625

Query: 117  KLSSQKMEEG-----KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             L   +         KE+  R           +RN     +  R     C   V  TR +
Sbjct: 1626 ILWPDEERSSNPNLEKEVKRRL--PTQAVAAANRNGRWKNQMRRAAHNGCCRRVAQTRAL 1683

Query: 172  FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
               L  L             E  L  +   +   G  VD+        ++  +   L+++
Sbjct: 1684 CSVLWKLLISEGLVEALKKIEMPLVNVLADMELWGIGVDMEACLRARNVLGKKLRHLEKK 1743

Query: 222  LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ--VFNN 279
               L  G+  S      +   L+    L + +              KL P   +  +   
Sbjct: 1744 AYELA-GMTFSLYTAADIANVLYGRLKLPIPEGHGKG---------KLHPSTDKHCLDLL 1793

Query: 280  RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            R +    A +   T+         L      +           V    NL         +
Sbjct: 1794 RKKYCCFAFMFYATI---AALKLGLLMLFFLILMILIWVSEIKVLLRTNLGVMQCVEHMV 1850

Query: 340  DQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +  I+       ++ +  +I +   R   I   E   L+ AD + IE R++A  + +   
Sbjct: 1851 EFKISMDKNGGDAEANNYKINA---REFFIPTQENWLLLTADYSQIELRLMAHFSKDASL 1907

Query: 399  LKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++       D++    AR    A   V   +R   K +   + Y  GA      A     
Sbjct: 1908 IELLSKPHGDVFTIIAARWTGKAEESVASLERDQTKRLVYGILYGMGANTL---AQQLEC 1964

Query: 458  NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            + +  A  +K+  +                               C     +W       
Sbjct: 1965 SSDEAAEKIKSFKS-------------------------------CFPGVASW------- 1986

Query: 518  SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                  LH+A     +NG     + R+                     R L     GN++
Sbjct: 1987 ------LHEAVASCRKNGYVETLKGRK---------------------RFLSKIKFGNSK 2019

Query: 578  SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------------------- 618
                    +  R+         +I Q  + D++   M+N                     
Sbjct: 2020 EK-----SKAQRQ------AVNSICQGSAADLIKIAMINIYSVIARVDGPDPSSSLATKF 2068

Query: 619  ---KAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
               K    I+L VHDE+V E        A+ L  
Sbjct: 2069 HMLKGRCRILLQVHDELVLEVDPPVIKEAASLLQ 2102


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 83/514 (16%), Positives = 161/514 (31%), Gaps = 87/514 (16%)

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
           Q  +D GY  D        +  D+ +TK  + L           +  ++L   +    GL
Sbjct: 530 QEDDDDGYLSDGRKKSVRKEEDDIPQTKAFKVLNIKGIIPEGKKKPPKQLDMNI-TGLGL 588

Query: 250 HLEDLTETTCQ----RVLSSNKKLTPQ-----AIQVFNNRMRASRSAVL---KLNTLVEA 297
            +  LT++        VL        +       ++  N   A++             + 
Sbjct: 589 EVISLTDSGMPAADLPVLKILAGNPKKGNYGAIGKLLKNNQLAAKVYNQIGEYYKQKGDE 648

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGC-VFPPQNLP-RPSRSHEELDQIITHLPTSITSDPD 355
                        +   +        + P + L  +  R H  L+ + T         P+
Sbjct: 649 EMGKRASHAIESLIQLKQVETLLTTFIIPLRELADKDGRIHCSLN-MNTETGRISARKPN 707

Query: 356 PLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            +   S       +RS   A +G KL+VAD   +E R+LA M   +  ++AF+ G D + 
Sbjct: 708 LMNQPSHDKDVYKIRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEAFKMGGDFHS 767

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    +     ++ K         EL L +                       L    S
Sbjct: 768 RTAMGMYPKLKEEIEKG--------ELLLEWDKSQG------------EPPAPLLKDKYS 807

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           +  +     NF     ++    + +        +    AW      V E      +   +
Sbjct: 808 SERKKAKMMNFSIAYGKSAHGFSKDWNCSMKEAQEALDAWFADRKEVKEWQENTKKIALE 867

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                   +  + R++  +   K          S R LV   +   R+ +NT        
Sbjct: 868 --HGYTQTMMGRYRNLERLTHSK----------SARHLVQHGL---RASINTP------- 905

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + D++   M+  ++       GY ++L +HDE++ E P+     A
Sbjct: 906 -----------IQGGAADLVIAAMVKVSQDPKLNELGYKLLLQIHDELILEGPEEHAQEA 954

Query: 645 -SMLYHLMTSNPSWAKGLPLKAEG------YESK 671
            + +  +M +       L ++ +       YE K
Sbjct: 955 LARVIEIMENPLDTPLLLKMEVDAKVGNNWYECK 988



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 22/172 (12%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           F + P    D    +  + Q+ KE LE++    + HN  F+R +    +N  I +  +  
Sbjct: 129 FGNGPRLFIDNFAQNTDLIQIFKEYLEDSRYKKIWHNYGFDRHI---FYNHGINVQGFGG 185

Query: 96  TLVLARSNGLPSALK---AVGEALKLSSQKMEEGK-ELIARFCKGETHECL--------Y 143
             +       PS      ++    K   ++++  K +LI    K                
Sbjct: 186 DTMHLARLADPSRGPKEYSLANVTKHYEEEIKYLKRQLINDLRKSIQINTQELQSVLAAL 245

Query: 144 DRNKPNHREAWRLFG--EYCKGDVT---VTREIFKRL-EPLSSKEQELWYLD 189
            +      E  + F    +   D     +  +I K L +   + + E +YL+
Sbjct: 246 QKGADLPHEIIQKFKLHRFNTRDEQIFFINDQIQKWLIKKQPADQYEKYYLN 297


>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
          Length = 1028

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 108/351 (30%), Gaps = 69/351 (19%)

Query: 319  WSGCVFPPQNLPRP---SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370
             SG + P Q         R H  L+ I T         P+             +R   +A
Sbjct: 707  ISGFIIPLQGDRISCKEGRIHCSLN-INTETGRLSARTPNLQNQPALEKDRYKIRQAFVA 765

Query: 371  SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            + G  L+VAD   +E R+LA +   +  L+AF+ G D +  T    +      V +    
Sbjct: 766  APGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEK--- 822

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              KV               +     G +      L  T  A        NF     +   
Sbjct: 823  --KV-------------LLEWHPQPGQDKPPVPLLKDTFGAERRKAKMLNFSIAYGKTAV 867

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              + +            K W +    VS  W           +  KA+   K     L+ 
Sbjct: 868  GLSQDWNVEVREARDTLKLWYRDRKEVSA-WQ----------KKQKALALEKCEVYTLLG 916

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
              +   N+    P  +  V       R+ +N                     Q  + D+ 
Sbjct: 917  RSRQFPNMTHAGPGQKGHV------ERAAINAPG------------------QGSAADVA 952

Query: 611  AEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
               M+   +       G+ ++L VHDE++ E P ++ E   S++   M+  
Sbjct: 953  MCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKSIVVECMSKP 1003



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 99/302 (32%), Gaps = 60/302 (19%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-- 99
           V++ D   D +M        E+  +  V HN  F+  V++ C    I +  +    +   
Sbjct: 320 VDVLDGGRDVLM--EFAPFFEDPSIKKVWHNYSFDNHVIENC---GIKVAGFHADTMHLA 374

Query: 100 -----ARSNGLPSALKAVGEALKLSSQKMEEG--------------KELIARFCKGETHE 140
                +R      +L+ +    ++ +  +++               K++     +G+T  
Sbjct: 375 RLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKKVRKNGSEGKTIS 434

Query: 141 C-LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLSSKEQ--------------- 183
               ++ +   RE W  +      D   T ++++ L+  L +KE                
Sbjct: 435 IEPVEKLQREDRELWICYSSL---DSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYE 491

Query: 184 ELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-----SSR 234
           E W     L   +   G  VD A    + +   VER     +               +  
Sbjct: 492 EYWRPFGALLVKMETEGMLVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVN 551

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              +++   F   G+   +    T  +  +      P    +     + S+S  +KL T+
Sbjct: 552 SDNQIRQLFFG--GIKNRNKPGETWPQSKTFK---VPNDESIATEGKKTSKSRTIKLFTI 606

Query: 295 VE 296
           VE
Sbjct: 607 VE 608


>gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis]
          Length = 2117

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 120/404 (29%), Gaps = 81/404 (20%)

Query: 173  KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            + L PL   E  L  + Q                        R +  + +     G   S
Sbjct: 1654 ELLPPLWRTEMPLEPMLQR-----------------------RIEELEGMAHAEAGQEFS 1690

Query: 233  SRCLEKLKTWLFLETGL-------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
                +++   LF    L        L+    +T Q VL       P A  +F +R   + 
Sbjct: 1691 LSSPQEVSRILFEVLKLAPPPCAKDLKSGGYSTGQEVLLEL-HEHPIARLIFEHRKLRTL 1749

Query: 286  SAVLK-------------LNTLVEAMNSDG-----RLRGTLQFLGASRTGRWSGCVFPPQ 327
                                   EA++  G     R+RG++       T R +      Q
Sbjct: 1750 LNRQGGPGLLPFVQGFKMHLAYAEAVSYPGGLVLKRIRGSINQ-----TCRLAMDEPNLQ 1804

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +P+P R+++ L         +  +     +     +R+  +A  G  L+ AD   IE R
Sbjct: 1805 CVPKP-RAYKVLLTPGELGSAASGASAHADRT--ANLRAAFVAPPGCVLLSADYRQIEFR 1861

Query: 388  VLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQ-------------VTKDQRAIGK 433
            ++A  +G+    + F   G D +    A+       Q             VT+ QR   K
Sbjct: 1862 LMAHFSGDPGLARVFSEDGADPFRLLAAQWLGAPQEQARPRGWLGRGRRGVTQQQRDHAK 1921

Query: 434  VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
             +   L Y  GA         +     T     + +    E   A       +       
Sbjct: 1922 QLTYGLLYGMGAAKLADELGCSVAEARTAQEKFRASMPGIEAWQARVVAECRRL------ 1975

Query: 494  IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                ++ T   R ++     + R         +  + T+  G A
Sbjct: 1976 ---GYVETLAGR-RRYLPNINCRDGRKRAAAERQAKNTVCQGSA 2015


>gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group]
          Length = 1986

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/524 (14%), Positives = 144/524 (27%), Gaps = 121/524 (23%)

Query: 166  TVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              TR +   L  L             E  L  +   +   G   D+        I+  + 
Sbjct: 1538 EKTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKL 1597

Query: 216  TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED------LTETTCQRVLSSNKKL 269
             +L++E   L  G   S      +   L+    L +        L  +T ++ L   +  
Sbjct: 1598 KELEKEAYKLA-GKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLRDQ 1656

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
             P    +  +R  A       LN  + ++ S             ++    S         
Sbjct: 1657 HPIISVIKEHRTLAKL-----LNGTLGSICS------------RAQLCSKS--------- 1690

Query: 330  PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
             +         Q  T        +P+                E   LV AD + IE R++
Sbjct: 1691 -QRYIIQGNWLQTSTATGRLSMEEPNLQ--------------ENWLLVTADYSQIELRLM 1735

Query: 390  AWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A  + +   ++       D++    +R    A + +   +R   K     + Y  GA + 
Sbjct: 1736 AHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICSKERETTKRFIYGILYGMGANSL 1795

Query: 449  QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +      L  +      K  S    +    ++      +       +  +G      ++
Sbjct: 1796 AEQ-----LECSPEDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLMGR-----RR 1845

Query: 509  AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
               +  +  S+   +  +    +I  G A    K   + +                    
Sbjct: 1846 FLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAMIKV-------------------- 1885

Query: 569  VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--KAGYDIVL 626
                   N S +  T                        D +   M N +  +    ++L
Sbjct: 1886 --HSAITNGSTVGATV-----------------------DSIDVAMQNFSEIRGRCHLIL 1920

Query: 627  TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKA 665
             VHDE+V E        A  L   +  N +   G     L L+A
Sbjct: 1921 QVHDELVLEVDPCMVAEAVRLLQTVMENSASLLGPSVSFLLLRA 1964


>gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1]
 gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1]
          Length = 895

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 162/448 (36%), Gaps = 88/448 (19%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+   G+  + E   + L  +G DD   + W    +P + + +KE       T+  HN  
Sbjct: 22  DIETTGLDYFTE--KITLVQYGTDDEH-QQW-YTEEPTI-EDIKEL---KKRTLFWHNGK 73

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLSSQKMEEGKELIA 131
           F+   +   F + +PIH    ++VL  + G   +L    A  + L + +  +E   +L  
Sbjct: 74  FDTKFIAYHFGVMLPIHG--DSMVLLHALGYSDSLSLKVAAAKLLGVENWDIEHDLKLSK 131

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                           P+   +   F EY   DV  T  + + L                
Sbjct: 132 ---------------GPDEEASKLKFFEYGLKDVKYTYALMRLL---------------- 160

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
               G           +Q  D E +K    ++ L Y + ++         ++   TG  L
Sbjct: 161 --LTGVN---------SQSDDPEDSKNFNTIDDLQYNVYNNELKAYSAFRYI-EMTGTPL 208

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN------SDGRLR 305
            D++++       +           +  R     S+  K+  L+  ++       +G++ 
Sbjct: 209 GDMSKSQ-----DAIDGKIEDIENKWGFRFDWVNSS-DKVGALLSLVDKRLKPGDNGKIS 262

Query: 306 GTLQFL--GASRTGRWSGCVFPPQNLPR-------------PSRSHEELDQIITHLPTSI 350
            T + L       G ++  V   + L +               R   + + I T    + 
Sbjct: 263 VTKEVLTKHIQEVGDFAYDVKEVRKLKKLIQFFDSWNKLGHDGRIFPQFN-ITTKTGRTS 321

Query: 351 TSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           +S+P+  Q+  D  VR+ + A +G K +  D + +E R  A+ A E   ++A++ G DL+
Sbjct: 322 SSNPNLQQVPQDSRVRNIIAAPKGMKFIECDYSQLELRCAAYCAQEPAMMEAYKNGADLH 381

Query: 410 VTTYARSFNVAPA---QVTKDQRAIGKV 434
             T+        +    + K +R I K 
Sbjct: 382 TKTWESMNGRPFSDDHDMAKRERTIAKA 409



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 12/113 (10%)

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLT 627
           +G  R      ++    + +   +     VQ +  DI    M            + +  T
Sbjct: 778 LGRRRYLPTVYSKDWGEKESAYRRSINTPVQGLGSDICVSAMTTILQHPEYGKTFFVHGT 837

Query: 628 VHDEIVCET--PDTDEFNASMLYHLMTSNP-----SWAKGLPLKAEGYESKRY 673
           +HD I+        +     ++  +M   P         GL L A+   +  +
Sbjct: 838 IHDAILVTAYEDQAEHVAYDIIKKIMEHPPILDKLPTTNGLYLIADADVTDSW 890


>gi|328873005|gb|EGG21372.1| DNA polymerase theta short isoform [Dictyostelium fasciculatum]
          Length = 989

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/590 (13%), Positives = 173/590 (29%), Gaps = 99/590 (16%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLS 119
           +EN +     +N    R  +K   ++DI +    +   V A                   
Sbjct: 428 MENPNSYKYLYNC---RAQIKMLMSMDIHVKKGIMDPRVGAWLLDP-------------D 471

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE--- 176
             K      L+  F + +      D         +     +C     + +++F R     
Sbjct: 472 KYKDTTLDTLVREFSQDKKLSTNVDELN-----HYDRSFHHCYRSFVLMKQLFTRFHFNR 526

Query: 177 ----PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                 +  E  L  +   +   G   D A        V  +   ++ +   +   L  S
Sbjct: 527 DLYKIFNEMEMPLLVILAKMEYNGIGFDDATCQNTKYEVLQKLQYIEVKARLMVPDLKFS 586

Query: 233 SRCLEKLKTWLFLET---GLHLEDLTE------TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               E +   L+       +   +  +      +T   +L +  +      ++     + 
Sbjct: 587 MSSKEDMSNILYNVLRVVDIPKANRGKIVKRHHSTKAAILEAVPEEKAAFPKMLIEWRKL 646

Query: 284 SRSAVLKLNTLVE--AMNSDG---RLRGTLQFLGASRTGRWSGCVFPPQ----------- 327
           S   +  ++ L +    N D    R+  T+       TGR +      Q           
Sbjct: 647 SHHLLNYVHVLFKFGYYNPDYEMMRIYTTIMQTNVP-TGRLAMTYPNLQSIANAFTFRES 705

Query: 328 ------------------------------NLPRPSRSHEELDQIITHLPTSITSDPDPL 357
                                         N+           + I  L T    + +  
Sbjct: 706 PISFSDVSTNNVSKASSSASQHCSPPYDHHNVTVDYSPSPNESKSIGSLSTLELKEDNC- 764

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARS 416
           ++I+  +R   I  +G   + AD + IE R+LA ++ ++  L        D + T + + 
Sbjct: 765 RLITVRIRDSFIPRKGYLFLSADYSQIELRILAHLSEDKLLLDGLNNPDFDFFKTMFVQM 824

Query: 417 F-NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                   VT ++R I K +   + Y  G  +         L+ +     +        +
Sbjct: 825 NKGTRIEDVTAEERDIAKELCYGILYGMGTWSLAN-----KLDRDEKEARILKEKLYNTY 879

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            D   +   +++ + +    + F        K+          E+  E  +A     +  
Sbjct: 880 RDLIKYIDSVKKRYHQVGYVETFYHR-----KRFLDNNTRDKVEIEKEKRKAVNSIPQGT 934

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
            A I ++         ++ K   +++L     L++ +V  + +  N   R
Sbjct: 935 AADIIKQAMISIDRIFEEQKTPALMVLQIHDELLF-EVREDSNGRNQIFR 983


>gi|47215759|emb|CAG05770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 462

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 138/443 (31%), Gaps = 50/443 (11%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  +  +   +      VD       + ++  +  +L+QE      G +       
Sbjct: 14  YTDMELNMIPVLAVMESHHIHVDKEALKRTSDLLGTKMKQLEQEAHR-AAGEIFLITSNT 72

Query: 238 KLKTWLFLETGL----------HLEDLTETTCQ------RVLSSNKKLTPQAIQVFNNRM 281
           +L+  LF    L             +  ++T +      + L   + L P    +   R 
Sbjct: 73  QLRAVLFERLRLHQQCENKKLPKTLNKQQSTSEAAVQYLKRLLQLQDLHPLPKIILEYRQ 132

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV-FPPQNLPRPSRSHEELD 340
              +     ++ ++  M +        Q L  ++  R  G      +  PR     +E  
Sbjct: 133 V-HKIKSTSVDGILSCMRNKNFQALPRQPLQITKQQRVQGKEEVVVKVHPREMFIPQEGW 191

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
             +      +     P        R   I  EG   V AD   +E R+LA  + +   L+
Sbjct: 192 TFVAAGKEEVVVKVHP--------REMFIPQEGWTFVAADFCQVELRLLAHFSSDPELLR 243

Query: 401 AFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            F     D++    ++   ++ ++VT + R   K +  ++ Y  G    ++++   G++ 
Sbjct: 244 IFNHPQSDVFTMLASQWKGLSQSEVTSEDREHAKRIVYSVVYGAG---RERLSGILGVSA 300

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              +    +      ++D + F +   +   +       +G      ++     H     
Sbjct: 301 KQASQFQDSFL--RAYKDVQAFIQKTIQQCHQQGCVLSLMGR-----RRTLPNIHLSDWA 353

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +  +  +     +  G A    K   + +  +    +    +L         D       
Sbjct: 354 VRMQAERQAVNFVVQGSAADLCKMAMIRIFNLVSSSSCSARLL-----AQLHDELLFEVE 408

Query: 580 LNTTTRQLTREYTYGGKLTENIV 602
            N   R       + GK TEN  
Sbjct: 409 DNQVHR-------FAGKFTENFT 424


>gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 958

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/442 (14%), Positives = 134/442 (30%), Gaps = 82/442 (18%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-S 232
            L     +E+ +  +   +   G+ V++            +  KL  E  S+   + + +
Sbjct: 448 LLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFN 507

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-------------------TTCQRVLSSNKKLTPQA 273
            +  +  +  L+    L    +++                   +T +  L    +     
Sbjct: 508 IQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGKLSTSEETLRILARHHEFP 567

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMN---SDG---------------------------R 303
             +   R  A       +  +  A+     DG                           +
Sbjct: 568 RILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSITEQGKEAIPNASDRHKAKWAK 627

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSR---SHEELDQIITHLPTSITSDPDPLQII 360
           L   L   G + TGR +      Q LPR ++   +HE+ +            + +     
Sbjct: 628 LHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTNDADSENGNYENINGDVNA 686

Query: 361 SDC----------------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +D                 +R C+ A +G  LV  D   +E RVLA ++G+   +     
Sbjct: 687 ADAGGNESDGPVQEKEVSFIRRCLGAPDGYSLVSLDYEQVELRVLAHLSGDSALINVLTK 746

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
             D++ +     F      VT ++R++ K +   + Y  G    + +A   G+++     
Sbjct: 747 SGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAGP---RGLAQQMGVSVEQA-- 799

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                     ++         Q    +    D  + T   R  ++    + RV    +  
Sbjct: 800 ----LRVSSLFKSCFPTVDAYQRRIIDQCRSDGSVRTLSGR-VRSIPDINDRVLTKRSHA 854

Query: 525 HQAFEQTIENGKAIIARKRRDV 546
            +    T+  G A    K   +
Sbjct: 855 ERQAFNTVVQGSAADVMKLGMI 876


>gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1264

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 304  LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            L       G + TGR S      QNLPR   +  E +     L                 
Sbjct: 971  LHPNFLQEG-TDTGRLSCVEPNLQNLPRNGITSTEEEGEEDLLG---------------- 1013

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
             R C +A+ G  L+  D   IE RVLA + G+   +KA  +  D++ T     F   P  
Sbjct: 1014 FRRCFVAAAGCVLLSIDYQQIELRVLAHLCGDPALVKALTSSADIHQTIAEVVFKKKP-- 1071

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            V+ ++R++ K +   + Y  G    + +A+  G+ ++   H+  T+     +     + R
Sbjct: 1072 VSTEERSLAKRVVFGVLYGAGP---KTLATHMGVTVDRALHI--TSLLTNAFPGINTYHR 1126

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
             +      +     F+ T   R+ +      S V    +   +    ++  G A
Sbjct: 1127 RVIAETRANG----FVRTLSGRL-RYLPDICSTVLSRRSYAERQAFNSVVQGSA 1175


>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
 gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
          Length = 972

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 98/336 (29%), Gaps = 66/336 (19%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEA 386
             R H  L+ I T         P      +       +R    A  G  L+VAD   +E 
Sbjct: 665 NGRVHAALN-INTETGRLSARRPSLQNQPALEKDRYGIRKAFSAEPGNILIVADYGQLEL 723

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA MAG     +AFE G D +  T    +      + +     GK        + G  
Sbjct: 724 RLLAHMAGCVSMREAFEAGGDFHSRTAMGMYKEIREAMEQ-----GK-----CLLEYGDI 773

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                     L  + FA                NF     +     A +        E  
Sbjct: 774 DDDAGGEKPALVKDMFAS-------ERRKAKVLNFSIAYGKTAHGLAKDFGVSTREAEET 826

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              W      V E W  +    ++  E GK      R                  LP   
Sbjct: 827 VDLWYSDRPEVRE-WQAVQH--KKAAEKGKVNTLLGRH---------------RNLPEAS 868

Query: 567 SLVYRDVGNN-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
           S      G+  R+ +NT                   +Q  + DI    M+   +      
Sbjct: 869 SSDEMRRGHALRASINTP------------------IQGGAADIAMLAMIQIHRCPRLRE 910

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655
            G+ +++ +HDE++ E P+     A  L  L    P
Sbjct: 911 LGFKLLMQIHDEVILEGPEEHRDEALALVKLHMEKP 946



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 79/270 (29%), Gaps = 65/270 (24%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-----------------FNLDIPIHRWICTL 97
           ++ K   E+ DV  V HN  F+R V++                   +N +  +       
Sbjct: 263 KIFKPYFESPDVKKVWHNYGFDRHVIENHGVKLAGFAADTMHMARLWNSNRKLEGGYSLE 322

Query: 98  VLAR----SNGLPSALKAVGEALKLSSQKMEE--GKELIARFCKGETHECLY----DRNK 147
            L+      +         GE L  S + M++  GK  + +         L      +  
Sbjct: 323 ALSSDPKVMSDAGEMYSEAGEELIRSKRGMKKIFGKAKLKKDGTPGKTVILPPIDEIQTD 382

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLE-----------PLSSKE---------QELW- 186
           P  RE W    EY   D   T  + + LE           P+ SK+          + + 
Sbjct: 383 PEQRETW---IEYSALDAQATWFLRESLEAKLRGIDCEACPVLSKKPTFRRCSNLWDFYV 439

Query: 187 -------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-----LVSSSR 234
                   +   +   G  VD A      +    ++   +    +   G        +  
Sbjct: 440 HYLREFGEVLTDMESNGMYVDKAHLADAEKRALEDKKVAEDYFRAWATGKCPAAEHMNVG 499

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
              +++  LF   G   +   +   ++   
Sbjct: 500 SGIQVRQLLFA--GAPNKRRDKPGVEKTRE 527


>gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei
           TREU927]
 gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei]
 gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 958

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 134/442 (30%), Gaps = 82/442 (18%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-S 232
            L     +E+ +  +   +   G+ V++            +  KL  E  S+   + + +
Sbjct: 448 LLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFN 507

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-------------------TTCQRVLSSNKKLTPQA 273
            +  +  +  L+    L    +++                   +T +  L    +     
Sbjct: 508 IQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGKLSTSEETLRILARHHEFP 567

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMN---SDG---------------------------R 303
             +   R  A       +  +  A+     DG                           +
Sbjct: 568 RILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSISEQGKEAIPNASDRHKAKWAK 627

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSR---SHEELD----------------QIIT 344
           L   L   G + TGR +      Q LPR ++   +HE+ +                 +  
Sbjct: 628 LHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTNDADSENGNNENINGDVNA 686

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                  SD    +     +R C+ A +G  LV  D   +E RVLA ++G+   +     
Sbjct: 687 ADAGGNESDGPVQEKEVSFIRRCLGAPDGYSLVSLDYEQVELRVLAHLSGDSALINVLTK 746

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
             D++ +     F      VT ++R++ K +   + Y  G    + +A   G+++     
Sbjct: 747 SGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAGP---RGLAQQMGVSVEQA-- 799

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                     ++         Q    +    D  + T   R  ++    + RV    +  
Sbjct: 800 ----LRVSSLFKSCFPTVDAYQRRIIDQCRSDGSVRTLSGR-VRSIPDINDRVLTKRSHA 854

Query: 525 HQAFEQTIENGKAIIARKRRDV 546
            +    T+  G A    K   +
Sbjct: 855 ERQAFNTVVQGSAADVMKLGMI 876


>gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae]
 gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae]
          Length = 2135

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/501 (14%), Positives = 146/501 (29%), Gaps = 124/501 (24%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  L  +   +   G+ V       L   +     KL+ ++  L  G   +    + +
Sbjct: 1728 DNEMPLCLILAQMEVIGFPVKEHRLGNLISQIAGSMKKLEAKIFEL-NGSRFNINSSQAV 1786

Query: 240  KTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L    G+H +     +T + VL   +   P A  +   R   +   ++K    +   
Sbjct: 1787 AKVL----GIHRKPTGRVSTSREVLERLE--APIANLICQYRKLNAL--LVKNVQPLMKC 1838

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
              + R+ G      A  TGR S      QN+ +      +    I               
Sbjct: 1839 CLNNRIHGHSITNTA--TGRISMAEPNLQNVAKNFVVDVQDRGAIVSC------------ 1884

Query: 359  IISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                  RS  +  +  + L+ AD   +E R+LA ++ ++  + A  +  D++ +  A   
Sbjct: 1885 ------RSAFMPMDSTRCLLSADFCQLEMRILAHLSQDKALVAAMNSPRDIFTSISAHWH 1938

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             +  ++V+   R   K +   + Y       +K+A    +       L +          
Sbjct: 1939 RMNESEVSDQLREGTKKICYGIIYGMS---MRKLADELNVTEQEAEVLSE---------- 1985

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                              Q HS    + +  ++  +     G  
Sbjct: 1986 ----------------------------------QFHSNYPGIRSYTNRLIKYARHKGYV 2011

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                 RR        +D                            T ++  R+       
Sbjct: 2012 ETITGRRRYLENIRSEDAG--------------------------TRKKAERQ------A 2039

Query: 598  TENIVQAVSRDILAEGMMN-------------ATKAGYDIVLTVHDEIVCETPDTDEFNA 644
              + +Q  + DI    ++                +   ++VL +HDE++ E P       
Sbjct: 2040 VNSTIQGSAADIAKVAIIKSVKYMRRHCQKLFIDENSVNLVLHIHDELMFEVPADKAKKI 2099

Query: 645  SMLYHLMTSNPSWAKGLPLKA 665
            + L  ++    +    +PLK 
Sbjct: 2100 AKLLKVVMEASA-RLTVPLKV 2119


>gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 324

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI QA +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 246 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 305

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 306 AWDLPLSANGFETYRYRK 323


>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
          Length = 982

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 103/334 (30%), Gaps = 66/334 (19%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H  L+ I T         P              +R   +A+ G  L+VAD   +E R
Sbjct: 678 GRIHCSLN-INTETGRLSARTPSLQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELR 736

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +   +  L+AF+ G D +  T    +      V +      KV             
Sbjct: 737 ILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEK-----KV------------- 778

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +     G +      L     A        NF     +     + +            
Sbjct: 779 LLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTL 838

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K W +    +S  W           +  KA+   K     L+   +   N+    P  +S
Sbjct: 839 KLWHRDRKEISA-WQ----------KKQKALAFEKCEVYTLLGRSRQFPNMTHAGPGQKS 887

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621
            V       R+ +N                    VQ  + D+    M+   +       G
Sbjct: 888 HV------ERAAINAP------------------VQGSAADVAMCAMLEIERNARLKELG 923

Query: 622 YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
           + ++L VHDE++ E P ++ E   +++   M+  
Sbjct: 924 WRLLLQVHDEVILEGPTESAEEAKAIVVECMSKP 957


>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 1035

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 103/334 (30%), Gaps = 66/334 (19%)

Query: 333  SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
             R H  L+ I T         P              +R   +A+ G  L+VAD   +E R
Sbjct: 731  GRIHCSLN-INTETGRLSARTPSLQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELR 789

Query: 388  VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
            +LA +   +  L+AF+ G D +  T    +      V +      KV             
Sbjct: 790  ILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEK-----KV------------- 831

Query: 448  FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +     G +      L     A        NF     +     + +            
Sbjct: 832  LLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTL 891

Query: 508  KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            K W +    +S  W           +  KA+   K     L+   +   N+    P  +S
Sbjct: 892  KLWHRDRKEISA-WQ----------KKQKALAFEKCEVYTLLGRSRQFPNMTHAGPGQKS 940

Query: 568  LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621
             V       R+ +N                    VQ  + D+    M+   +       G
Sbjct: 941  HV------ERAAINAP------------------VQGSAADVAMCAMLEIERNARLKELG 976

Query: 622  YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
            + ++L VHDE++ E P ++ E   +++   M+  
Sbjct: 977  WRLLLQVHDEVILEGPTESAEEAKAIVVECMSKP 1010


>gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
 gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1388

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 164/519 (31%), Gaps = 96/519 (18%)

Query: 30   VILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACFNLD 87
            V L  +  +   PV   D     ++P      LE  D TIV HN   ++   L+  + LD
Sbjct: 838  VRLATYSVNGAEPVPTTDIA-GELIP-----LLEKAD-TIVGHNVLQYDLPALQRLYGLD 890

Query: 88   ----IPIHRWICTLVLARSNG-----LPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                I   R   TLV+AR        L   L  V     +  + + +G+  +    K   
Sbjct: 891  VKALIKADRVRDTLVMARLRAGGDKNLKYDLDKVASRCGVDGKLLADGETALKALAKQFG 950

Query: 139  HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL---------EPLSSKEQELWYLD 189
                   + PN       + EY   DV     ++++L         +     E    +  
Sbjct: 951  GFDKIPVDNPN-------YVEYALQDVRANVAVYEKLLTSVGKEINQDYLRLEHAKMHAL 1003

Query: 190  QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL-------EKLKTW 242
              +  RG  VD +         +  + ++   L   T G+    +         + +  +
Sbjct: 1004 AVVEARGIRVDTSKVDQFLAEEEQTKGEIRTWLID-TVGIPDEGKSPWASAAGKQVIADY 1062

Query: 243  L--FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            L  F          + +T  + L+   +  P   +V      A++   L   +       
Sbjct: 1063 LSQFNVAAPRTSKGSISTSTKALNELAEKHPDVPEVVE---LAAKMETLLHASTP----- 1114

Query: 301  DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                        AS   R+           R  R +  + + I       T+ P      
Sbjct: 1115 ------------ASTINRYL----------RGDRVYPSI-KSIQATGRLSTTKPGMTVFG 1151

Query: 361  SD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
            S        R  ++     + LV  DL+ I+AR +A  +G+    + F  G D +     
Sbjct: 1152 SRGEWLIRQREMILPDSTDEALVSVDLSQIDARCMAAGSGDANYAQLFTPGRDAHTEMAL 1211

Query: 415  RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
            R F          +R+  K +  A  Y  G K+F   A   G++       V+     E 
Sbjct: 1212 RVFG------DASRRSDAKALAHAANYGMGQKSF---AQHAGISE------VEATKQLER 1256

Query: 475  WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                       +++  +HA    +I T   R     R K
Sbjct: 1257 LHYEFPALEKFKDHLRKHAAAHGWIPTGFGRRVTVDRAK 1295



 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 603  QAVSRDILAEGMMNATKAGYDIV-LTVHDEIVCETPDTDEFNASMLYH-LMT 652
            Q  +RD+  EG++N      ++V + VHDEIV   P      A  + H +M 
Sbjct: 1306 QGTARDVFLEGVLNLPAEVLEMVRIFVHDEIVLSVPRD---RAEEIKHTVMG 1354


>gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1]
 gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1]
          Length = 624

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 102/561 (18%), Positives = 172/561 (30%), Gaps = 74/561 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D    G+  YA    +    FG       +          +   + +       + HN+ 
Sbjct: 40  DTETTGLDIYAPGYGLRTVQFGTTHEAW-VIHYELRGRF-KEAADYVLKHCPRFLIHNAM 97

Query: 75  FERTVLKAC--FNLDIPIHRWICTLVLARSN--------GLPSALKAVGEALKLSSQKME 124
           F+  VL A    +L+    R I T + A           G+ + LK +       S    
Sbjct: 98  FDWLVLDAHADVSLESLAPRTIDTKIKATLIDPRQPQEGGIGTGLKPLSAFYVDPSAPDT 157

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------FKRL-- 175
           +G         G T    +      H      +  Y   DV  T  +        +RL  
Sbjct: 158 QGDLTAVFRSLGLTKATGFAGIDLRHP----TYNLYAGLDVIYTARLNPCLDVEHERLGV 213

Query: 176 -EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              L+  E E+ Y+   +   G  +D+    TL +++  E  K      S     V S  
Sbjct: 214 RAALTDYEHEIAYMCAYMQRAGLVLDLEYVDTLRRMLREEEDKYATIAASW---GVESVN 270

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              ++   L L  G   E LTETT    L  +KK+      +  +  R        L   
Sbjct: 271 SGAQVSEAL-LAMG---ETLTETTDGGALKVSKKVLLPLADLDRDWERIGAREPNPLAEA 326

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           V      G+         +S   +++    P        R H  ++ +         S  
Sbjct: 327 VLRAKRAGK-------WVSSYADKFAENHDPL------GRIHPTINTLQARTGRMSISGD 373

Query: 355 DPLQIISDC---VRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLK---------- 400
              Q +      +R  V+  +   +V   D   IE RVLA +AG +   +          
Sbjct: 374 FAAQTLPSSDWMIRRAVLGDKPDHIVGSVDFQAIEMRVLAALAGVRRMTEGFLDPDPDPS 433

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            +  G D+++ T            TK  R + K       Y GG    + ++  TG   +
Sbjct: 434 VYPDGFDIHMYTARLIKGP---NATKRDRKVFKGAGFGKVYGGG---IKTISRQTGAPEH 487

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  V        + + +   R   +   E         T   R+    R    R+  +
Sbjct: 488 EIARAV--AEYDRVFPEIK---RASSKWQREARARGCVTVTPTGRILPLDRN---RMYAV 539

Query: 521 WNELHQAFEQTIENGKAIIAR 541
            N   Q+  + +     I  R
Sbjct: 540 VNYKCQSTARDVLGQAMINMR 560


>gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus]
          Length = 467

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 128/422 (30%), Gaps = 59/422 (13%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            D+    + +   +   + E  L  +   + +    VD       + ++     +L+QE 
Sbjct: 15  MDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEA 74

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
             +  G         +L+  LF +  LHL    +   +  L +    +    Q       
Sbjct: 75  HFVA-GEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMTQ------- 126

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                   +        +                G  S                   +Q 
Sbjct: 127 ---WRTSGVPAGPHCCATTADSCLLSWLYPIGLLGSISST----------------WNQT 167

Query: 343 ITHLPTSITSDPDPLQIISDCV--------------------RSCVIASEGKKLVVADLA 382
            T         P+   I    +                    R+  ++SEG   + AD +
Sbjct: 168 GTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEGHTFLAADFS 227

Query: 383 GIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            IE R+LA ++G+   LK F+  E  D++ T  ++  ++   +VT   R   K +  ++ 
Sbjct: 228 QIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVV 287

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y  G    +++A+  G+ +    H +      E +       +   +          ++ 
Sbjct: 288 YGAGK---ERLAACLGVTVLEATHFL------ERFLQKYKKIKDFAQTVIGQCHSAGYVT 338

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           +   R ++   +  ++  +L  +  +     +  G A    K   + +         L  
Sbjct: 339 SILGR-RRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTA 397

Query: 561 ML 562
            L
Sbjct: 398 RL 399



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           Q  R      +    +VQ  + D+    M+  + A          +V  +HDE++ E  D
Sbjct: 355 QQLRAQAER-QAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVED 413

Query: 639 T--DEFNASMLYHLMT 652
           T   EF A+++  +M 
Sbjct: 414 TQVPEF-AALVRRIME 428


>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
 gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group]
          Length = 560

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 99/334 (29%), Gaps = 66/334 (19%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387
            R H  L+ I T         P+             +R   +A+ G  L+VAD   +E R
Sbjct: 256 GRIHCSLN-INTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELR 314

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A  +  L AF+ G D +  T    +      V +      KV             
Sbjct: 315 ILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEK-----KV------------- 356

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +     G        L     A        NF     +     A +        +   
Sbjct: 357 LLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTL 416

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K W +    V   W    +   Q       ++ R RR   + +    +            
Sbjct: 417 KLWYRDRKEVLA-WQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRG---------- 465

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621
                    R+ +N                    VQ  + D+    M+   +       G
Sbjct: 466 ------HIERAAINAP------------------VQGSAADVAMCAMLEIDRNARLKELG 501

Query: 622 YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
           + ++L VHDE++ E P ++ +   S++   M+  
Sbjct: 502 WRLLLQVHDEVILEGPTESADLAKSIVVECMSKP 535


>gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
 gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
          Length = 1474

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 94/548 (17%), Positives = 170/548 (31%), Gaps = 105/548 (19%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVC-VILFAFGFDD-HPVELWDCVHDPVMPQVLKEA 60
            T+  D ET S  D          +D   V L  +      PV   D     ++P      
Sbjct: 903  TVVFDLETGSADDQHVT------DDPGFVRLATYSVGGAEPVATTDIA-GELIP------ 949

Query: 61   LENTDVTIVAHN-SYFERTVLKACFNLD----IPIHRWICTLVLARSNG-----LPSALK 110
            L     TIV HN   ++  VL+  + LD    I   +   TL++ R        L   L 
Sbjct: 950  LLEQADTIVGHNIVQYDLPVLQRLYGLDVGALIKAGKVRDTLIMVRLASGGNRNLEYNLD 1009

Query: 111  AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            AV     +  + +   +  +    K       +D+   ++ E    + EY   DV     
Sbjct: 1010 AVAHRCGVDGKLLAGSESALKALAKQY---GGFDKIPVDNPE----YVEYALQDVRANGA 1062

Query: 171  IFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++++L P            +E E  +    +   G  VD A            + ++   
Sbjct: 1063 VYEKLLPATIEAVGEDYLRREHEKMHSLSVVESHGVRVDTAKVDAFIAEEAQTKAEIRAW 1122

Query: 222  LESLTYGLVSSSRCL-------EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTP 271
            L   T G+    +         + +  +L    G+      +   +T  + L+   +   
Sbjct: 1123 LVD-TVGIPDEGKAPWASAAGKQAIAEYL-ERFGVAAPRTAKGAISTSAKALNDLAEAHA 1180

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +V     +                         LQ    + T +            R
Sbjct: 1181 DVPEVVELAAKME---------------------TLLQSSTPATTIKKYL---------R 1210

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASE-GKKLVVADLAGIE 385
              R +  +           T++P      S        R  ++A    ++L+  DL+ I+
Sbjct: 1211 GERVYPHITSS-QATGRLSTTNPGMTVFGSRDERLIRQREMIVADSADEELISVDLSQID 1269

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            AR +A  +G+      F  G D +     R F          +R+  K +  A  Y  G 
Sbjct: 1270 ARCMAAGSGDAAYAALFAPGRDAHTEMAIRVFG------DAARRSDAKALGHAANYGMGP 1323

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            K+F   A+  G++       +          +A       +++  +HA    +I T   R
Sbjct: 1324 KSF---AAHAGISEVEAKEQLDRLHFEFPQLEA------FKDHLRKHAKALGWIATGFGR 1374

Query: 506  VKKAWRQK 513
                 R K
Sbjct: 1375 RVAVDRAK 1382


>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 808

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 119/414 (28%), Gaps = 80/414 (19%)

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
            LT    +     +  +  +A + F       + A + L  L E  + +  L   ++ L 
Sbjct: 438 SLTSAGVETDHEEDLSVYGKAYKAFLGGQE-GKEACMALAALCEVASINTLLSNFIEPLQ 496

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367
            +     S             R H  L+ I T         P              +R  
Sbjct: 497 GNDIKSVS-----------DGRVHCSLN-INTETGRLSARRPSLQNQPALEKDRYKIRQA 544

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +A+ GK LVVAD   +E R+LA +A  +    AF  G D +  T    +      V KD
Sbjct: 545 FVAAPGKALVVADYGQLELRLLAHLADCKSMKAAFIAGGDFHSRTAMNMYPHVREAVEKD 604

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
                                + +    GL       L     +        NF     +
Sbjct: 605 ---------------------RVLLEWEGLEKPPVPLLKDMFGSERRKAKMLNFSIAYGK 643

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                A +        +     W      V     E  Q   +T+     ++ R R    
Sbjct: 644 TAMGLAKDWNVKLDEAKATVDLWYSDRPEVLAWQKERKQEAHETLR-VHTLLGRARH--- 699

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         LP   S                +  L R +     +   + Q  + 
Sbjct: 700 --------------LPDINS----------------SNSLLRSHMERAAINTPVQQGSAA 729

Query: 608 DILAEGMM------NATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
           D+    M+         + G+ ++L VHDE++ E P ++ E    ++   M   
Sbjct: 730 DVAMCAMLEINQNARLRELGWKLLLQVHDEVILEGPLESAEEAKELVIKSMMYP 783



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 79/265 (29%), Gaps = 57/265 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           F +G +   V++ D      + +V K   E+  +  V HN  F++ +L     +  P   
Sbjct: 75  FGYGKNRLWVDVLD--GGDDVLRVFKRYFEDPSIQKVWHNYSFDKHILSRH-GIH-PQGF 130

Query: 93  WICTLVLARSNGLPSALKAVG---EALKLSSQKMEE--------------GKELIAR-FC 134
           +  T+ LAR N         G   E L    + M+               GK+ +   F 
Sbjct: 131 YADTMHLARLNDSARRGSKGGYALEVLSADRKVMDYCSKNFTEEDGSVFVGKKSMKELFG 190

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTV---------TREIFKRLE------PLS 179
           K +  +               L  +    D  +         T  +F  L+      P S
Sbjct: 191 KAKLKKDGTPGKIKVVPPVDELQRDEELRDAWIHYSTLDAVCTWRLFVSLQHKLSNTPWS 250

Query: 180 SKE-----------QELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             E           ++ W     +   +   G  VD     T+ ++   ++         
Sbjct: 251 VAELRHKGSMYDFYEKYWRPFGEVLVQMEAYGMLVDYDHLATVEKLARAQQKISVSRFRK 310

Query: 225 LT-----YGLVSSSRCLEKLKTWLF 244
                       +     +++ +LF
Sbjct: 311 WAARYCPNAARMNVGSDAQIRQFLF 335


>gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 92

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 4  LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
          LF D ET S I +  CG  +YAE+  ++LFA+ ++   V++WD   D  MP  LK   + 
Sbjct: 5  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63

Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPIH 91
           ++  V HN   F+  +LK   N+D+P+ 
Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLPLS 92


>gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis]
 gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis]
          Length = 2193

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 90/543 (16%), Positives = 166/543 (30%), Gaps = 112/543 (20%)

Query: 118  LSSQKMEEGKELIARFCKGETHE---CLYDRNKPNHR--------EAWRLFGEYCKGDVT 166
            L   K    K +  +F    T     C   R   +H            R   E C     
Sbjct: 1713 LEPDKTVSFKNMCQQFAPECTALANLCGSGRGYSSHGLDSSSAILPKLRASIEAC----- 1767

Query: 167  VTREIFK-RLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            VT  I K ++E L     E  +  +   +   G+         L + +     K++ ++ 
Sbjct: 1768 VTVHILKGQIENLERIEVEMPIQIVLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIY 1827

Query: 224  SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             + +G   +    + +   L    GLH +              +KL     ++  N  + 
Sbjct: 1828 KM-HGSKFNLGSTQAVANVL----GLHRKPHGR--VSTSRQVLEKLGSPISELILNHRKL 1880

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +   V  +  L+       R+ G      A  TGR S      QN+ +            
Sbjct: 1881 NMQIVKGMQPLIR-CCKANRIHGHSITHTA--TGRISMSEPNLQNVAKDFDIRMG----- 1932

Query: 344  THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                      PD ++I    V   +   E + L+ AD   +E R+LA ++ ++  +    
Sbjct: 1933 ----------PDSVRISCRSVFKSM--DEKRCLLSADFCQLEMRILAHLSQDKALVSVMN 1980

Query: 404  TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            + +DL+    A   ++  A+VT+  R+  K +   + Y  G ++       T        
Sbjct: 1981 SPQDLFTAIAAHWNHIPEAEVTEQMRSGTKQICYGIVYGMGMRSLGDALQCTESEAQ--- 2037

Query: 464  HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                     E++  +    R   E   + A +  ++ T   R ++     +S    L  +
Sbjct: 2038 ------LICEQFHQSYPGIRAYTEKVLKFARKLGYVETITGR-RRYLDHINSGEQNLIKQ 2090

Query: 524  LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
              +    T   G A    KR  +                         D+  N       
Sbjct: 2091 AERQAVNTTIQGSAADIAKRAIL-------------------------DMDKNI------ 2119

Query: 584  TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
             R   +         EN +Q                    +VL +HDE+V E P+     
Sbjct: 2120 GRYWKKLGVE-----ENSIQ--------------------LVLHIHDELVYEVPEAKAKR 2154

Query: 644  ASM 646
             + 
Sbjct: 2155 IAK 2157


>gi|198451642|ref|XP_001358456.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
 gi|198131580|gb|EAL27595.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
          Length = 2054

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 144/467 (30%), Gaps = 93/467 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +  +   +   G+         L + +     K++ ++  + +G   +    + +
Sbjct: 1645 EVEMPIQIVLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKM-HGSKFNLGSTQAV 1703

Query: 240  KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
               L    GLH +              +KL     ++  N  + +   V  +  L+    
Sbjct: 1704 ANVL----GLHRKPHGR--VSTSRQVLEKLGSPISELILNHRKLNMQIVKGMQPLIR-CC 1756

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
               R+ G      A  TGR S      QN+ +                      PD ++I
Sbjct: 1757 KANRIHGHSITHTA--TGRISMSEPNLQNVAKDFDIRMG---------------PDSVRI 1799

Query: 360  ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
                V   +   E + L+ AD   +E R+LA ++ ++  +    + +DL+    A   ++
Sbjct: 1800 SCRSVFKSM--DEKRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHI 1857

Query: 420  APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              A+VT+  R+  K +   + Y  G ++       T                 E++  + 
Sbjct: 1858 PEAEVTEQMRSGTKQICYGIVYGMGMRSLGDALQCTESEAQ---------LICEQFHQSY 1908

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
               R   E   + A +  ++ T   R ++     +S    L  +  +    T   G A  
Sbjct: 1909 PGIRAYTEKVLKFARKLGYVETITGR-RRYLDHINSGEQNLIKQAERQAVNTTIQGSAAD 1967

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              KR  +                         D+  N        R   +         E
Sbjct: 1968 IAKRAIL-------------------------DMDKNI------GRYWKKLGVE-----E 1991

Query: 600  NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
            N +Q                    +VL +HDE+V E P+      + 
Sbjct: 1992 NSIQ--------------------LVLHIHDELVYEVPEAKAKRIAK 2018


>gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush]
 gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush]
          Length = 609

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 116/692 (16%), Positives = 191/692 (27%), Gaps = 195/692 (28%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           D+   G+ +  E  C+     G+D     V L D +  P      ++        +V HN
Sbjct: 46  DIETPGLDRNFEINCLTAAWIGWDGTIESV-LLDPIRWPAHRAAARDVFARAS-KLVFHN 103

Query: 73  SYFERT-VLKACFNLDIPIHRWICTLVLARSN-------GLPSALKAVGEALKLSSQKME 124
           + F+   +          I +   T++LAR          LP           L    + 
Sbjct: 104 ASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLLGLVDVA 163

Query: 125 EGKELIARFCKGETHECLYDR---NKPNHREA---------------------WRLFGEY 160
            G E   +    +T +  Y+    + P +R+                      W     +
Sbjct: 164 GGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVEWTTSHPF 223

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   T   E  + LE    +E   W + Q  + RG  VD        +       +L+ 
Sbjct: 224 AEFGATTEAEALEVLE---VQEIAHWVMLQR-SARGLAVDRDYLDEYRE--REHDKRLEH 277

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQAIQ 275
                 Y L   +     L  WL     L            +  +  L +       A  
Sbjct: 278 AAFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPVAAA-- 335

Query: 276 VFNNRMRASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
               R  A    VL     +       GR    +  LGAS                    
Sbjct: 336 ---QRALAQSDKVLGYLEKVSRQAAVTGRCHPQVAILGAS-------------------- 372

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                              P+  Q   D     +I  +G+ L   D A IE   +A MAG
Sbjct: 373 ----------ATGRMSYGSPELQQFPKDARP--IIVDDGQGLTSVDWAQIEPVTMALMAG 420

Query: 395 EQWKLKAF-ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++  L  F E   DLY             +     R + KV+ LA  Y  G         
Sbjct: 421 DREFLAPFFENDADLYE---------PIMRACGIDRPMAKVILLATMYGQG--------- 462

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                   A +  R +       A           ++++     
Sbjct: 463 ------------------------ARSMARRIGHTEESAA-----------QIRRQMLAA 487

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                +   ++       I +G+ +    R                 +LP  +   YR  
Sbjct: 488 MPASRDFMAKVESI---AITHGRIVTGGGR-----------------ILPVDQQGSYR-- 525

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDE 631
                                      I Q  + D+LA  ++   +AG    + L +HDE
Sbjct: 526 -----------------------AVNYICQGSAYDVLAHTIVRLDEAGLSGHVQLAMHDE 562

Query: 632 IVCETPDTDEFNASMLYHLMTSNPS----WAK 659
           +V +T       A+ + H+M + P     WAK
Sbjct: 563 LVVDTD-----VAAEVEHIMMTPPEFLTRWAK 589


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 774

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/377 (17%), Positives = 112/377 (29%), Gaps = 123/377 (32%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEA 386
            SR H  L+ + T      +  P+     +       +R    AS G  L+VAD   +E 
Sbjct: 469 KSRVHCSLN-LNTETGRLSSRGPNLQNQPALEKDTYQIRKAFEASPGNNLIVADYGQLEL 527

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ------------------ 428
           R+LA M G +  ++AFE G D +  T    F+   A+V   +                  
Sbjct: 528 RLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKAKVDSGEALLEWDYAKGDPPKPLVK 587

Query: 429 ------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R   K +  ++ Y   A     ++   G+ L     ++K               
Sbjct: 588 DLFASERRKAKTLNFSIAYGKTAF---GLSDDWGVTLQEAEEMLKA-------------- 630

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                      W +    V ++W    +   +     + ++ R 
Sbjct: 631 ---------------------------WYKARPEV-DVWQTQVKLTARNHGYTRTLMGR- 661

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                      YRD+   +S      +Q  R            +
Sbjct: 662 ---------------------------YRDLPEAKSKRQKFAKQAERAS------INTPI 688

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655
           Q  + DI    M            G+ ++L VHDE++ E P+     A   + + M    
Sbjct: 689 QGGAADIAMMAMNKINANEKLKALGWILLLQVHDEVMLEGPEETAKEAFDEVLNNMQEP- 747

Query: 656 SWAKGL-----PLKAEG 667
            W  GL     PL  +G
Sbjct: 748 -WVFGLMKTAVPLLVDG 763



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 89/291 (30%), Gaps = 43/291 (14%)

Query: 33  FAFGFDDHPVE-LW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           F +G  + P   LW  +      + Q  K   EN     V HN  F+R V+   +N  I 
Sbjct: 59  FDYGLGEGPGSCLWIDNLDDAAGILQEFKAWFENPRFLKVWHNYGFDRHVM---WNEGID 115

Query: 90  IHRWICTLVLARSN----------GLPSALKAV-GEALKLSSQKMEE---GKELIARFCK 135
           +       +               G   +L+A+  + L    Q M+E      L     +
Sbjct: 116 VQGLGGDTMHMARLQDTCRSKMAKGGGYSLEALTADLLSRRKQPMKELFGVHRLRKDGSE 175

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVT------VTREIFKRLEPL--SSKEQELWY 187
           G   +     +     E+  ++ +Y   D           E   +++P   +    + ++
Sbjct: 176 GALVDIPPVESMQRDPESRSMWIKYSCYDAEGTWLLREELEKRLKMKPWIGNKNLWDYYF 235

Query: 188 LDQT--------INDRGYCVD-VALAHTLNQIVDVERTKLDQELESLT------YGLVSS 232
           L           +  RG  V+       + +    +R    +             GL  +
Sbjct: 236 LHMRPFAEVLTDMERRGVRVNAKDYLFNVERKAREDRVHHSKIFREWAASKIGPDGLALN 295

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                +L+   F  +          T + V     ++   A+    N+ +A
Sbjct: 296 LSSATQLQALFFGGSENLKTKEQSETVRVVKVPRDEIPEDALHALENQSKA 346


>gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1683

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 127/391 (32%), Gaps = 56/391 (14%)

Query: 176  EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            E L   E  L  +   +      +D+ +       +  +  +L+ + E L  G+  S   
Sbjct: 1237 EALLQLEMPLVRVLADMETWSLGLDMRVCRKAQSHLHCKLRELEAQGEKLA-GMSFSLSA 1295

Query: 236  LEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASR----- 285
              ++   L+    L +    +     +T ++ L   +   P A  +  +R  +       
Sbjct: 1296 PAEVAHVLYRHLKLPVPPGCKGKHHPSTDKQALEFLRNHHPIADIIKEHRSLSKLLQSTL 1355

Query: 286  -------SAVLKLNTLVEAMNSDGRLRGTLQF--LGASRTGRWSGCVFPPQNLPRPSRSH 336
                    +   L +  E  +  G +          ++ TGR S      Q         
Sbjct: 1356 GSIIAWAKSPEPLFSSQERSSR-GEIFSIAGHWLQTSTATGRLSMEDPNLQ-------CV 1407

Query: 337  EELDQIITHLPTSITSDPDPLQIISDC-VRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
            E           S+  D +    + +   R   + S EG  L+ AD + IE R++A  +G
Sbjct: 1408 EHAVSFTIEGGRSLDGDQEKANNVVEVNARQAFVPSQEGWILLSADYSQIELRLMAHFSG 1467

Query: 395  EQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   +        DL+    A+   +   +V+  QR   K +   + Y  G     +   
Sbjct: 1468 DPSLVSLLSHPTGDLFRVLAAQWTGLPMCEVSDKQRERTKRLVYGILYGMGVNTLAEHLE 1527

Query: 454  ------------------------TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                                    +  ++       + T S  + + D  N  +W ++  
Sbjct: 1528 CPVAEAQVMLERFKGTFPLVTTWLSHAVDSCRQKGYITTLSGRKRYLDKINTGKWGEQAK 1587

Query: 490  PE-HAIEDLFIGTACERVKKAWRQKHSRVSE 519
             E  A+  +  G+A + +K A  + H  +S 
Sbjct: 1588 AERQAVNSICQGSAADLIKLAMIKVHDAISS 1618



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 574  GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVL 626
            G  R      T +   +     +   +I Q  + D++   M+    A          ++L
Sbjct: 1569 GRKRYLDKINTGKWGEQAKAERQAVNSICQGSAADLIKLAMIKVHDAISSSHQGSCRLLL 1628

Query: 627  TVHDEIVCETPDTDEFNASML 647
             +HDE++ E       + + +
Sbjct: 1629 QIHDELLLEVDKRVLKHVAQI 1649


>gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei]
          Length = 958

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/442 (14%), Positives = 133/442 (30%), Gaps = 82/442 (18%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-S 232
            L     +E+ +  +   +   G+ V++            +  KL  E  S+   + + +
Sbjct: 448 LLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFN 507

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-------------------TTCQRVLSSNKKLTPQA 273
            +  +  +  L+    L    +++                   +T +  L    +     
Sbjct: 508 IQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGKLSTSEETLRILARHHEFP 567

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMN---SDG---------------------------R 303
             +   R  A       +  +  A+     DG                           +
Sbjct: 568 RILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSISEQGKEAIPNASDRHKAKWAK 627

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSR---SHEELD----------------QIIT 344
           L   L   G + TGR +      Q LPR ++   +HE+ +                 +  
Sbjct: 628 LHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTNDADSENGNNENINGDVNA 686

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                  SD    +     +R C+   +G  LV  D   +E RVLA ++G+   +     
Sbjct: 687 ADAGGNESDGPVQEKEVSFIRRCLGVPDGYSLVSLDYEQVELRVLAHLSGDSALISVLTK 746

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
             D++ +     F      VT ++R++ K +   + Y  G    + +A   G+++     
Sbjct: 747 SGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAGP---RGLAQQMGVSVEQA-- 799

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                     ++         Q    +    D  + T   R  ++    + RV    +  
Sbjct: 800 ----LRVSSLFKSCFPTVDAYQRRIIDQCRSDGSVRTLSGR-VRSIPDINDRVLTKRSHA 854

Query: 525 HQAFEQTIENGKAIIARKRRDV 546
            +    T+  G A    K   +
Sbjct: 855 ERQAFNTVVQGSAADVMKLGMI 876


>gi|162135103|ref|YP_001595844.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513950|emb|CAO77776.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 664

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 118/701 (16%), Positives = 209/701 (29%), Gaps = 122/701 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICK------YAEDVCVILFAFGFDDHPVELWDCVH--DPVM 53
             + ID ETR P DL K G         Y     +   +F  +D P       H     +
Sbjct: 31  KRVAIDCETRDP-DLRKLGPGAGRRPNSY-----ITGISFAIEDGPGGYLPIRHEGGGNL 84

Query: 54  P-QVLKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
           P + +   L           V  N  ++   L       I   R      +  ++ L   
Sbjct: 85  PLEGVLAYLRAQAKVFTGDLVGANLPYDLDFLA---GDGIEFERVRYFRDIQIADPLICE 141

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV- 167
           L        ++ +    GK+      +    +   D  K       +  G+Y + D  + 
Sbjct: 142 LHDSYSMQAIAERWGFYGKDEA--LLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRLP 199

Query: 168 -------TREIFKR-LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                   REI ++ L  + + E +L  +   +  RG  +D      + +    + T+  
Sbjct: 200 LNILRRQEREIDEQDLWGVYNLESKLLPILTRLRRRGVRIDCDRLDMIERWALEKETEAL 259

Query: 220 QELESLTYG--LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
            ++ S+T     V      E +   L    G+ L   ++            +      + 
Sbjct: 260 AQVRSITGHRIAVGDVWKPEVIAPAL-EHIGIKLNKTSQGKPSIDKELLGSIDHPVAGLL 318

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
               + ++      +++ + M  +GRL GT   L                   R  +  E
Sbjct: 319 ERARKVNKLRTTFASSVRDHM-VNGRLHGTFNQL-------------------RRQKDDE 358

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCV-----RSCVIASEGKKLVVADLAGIEARVLAWM 392
                        +  P+  Q  +        RS  +  EG+     D +  E R+    
Sbjct: 359 SDGTAGAAYGRLSSEHPNLQQQPARDEFAMMWRSIYLPEEGQHWASNDYSQQEPRMAVHY 418

Query: 393 A-------GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
           A       G +  L A     D Y        +   A +   +R   K + L L Y  G 
Sbjct: 419 ACLAKDLIGHKAWLSAI-EARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLGLSYGMG- 476

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               KM    GL       ++       +  D  +     Q    E A      G   + 
Sbjct: 477 --GAKMCRKLGL-----PTMMAVRGPRFQLFDVNSP--EGQRLVAEGARRFEAAGPEGQA 527

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           +   + QK   + +L        +  +     +  R+ R                  P  
Sbjct: 528 LLDTFDQKVPFIKKLAKACEARAK-AVGYITTLSGRRCRF-----------------PKD 569

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
           +   Y                   ++T+ G     ++Q  S D     M+   +AG DI+
Sbjct: 570 KDGNY-------------------DWTHKG--LNRLIQGSSADQTKMAMVACAEAGLDII 608

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDEI     D  E  A+   H+M +       LP K +
Sbjct: 609 IQVHDEIAFSVHDMKE--AAEAAHIMRTCTP--LELPSKVD 645


>gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4]
 gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4]
 gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4]
          Length = 630

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 104/651 (15%), Positives = 205/651 (31%), Gaps = 112/651 (17%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
           M T + +D ET     +    I          LF    +      W      V    L++
Sbjct: 1   MTTYIALDLETEQVARMPHGKIHA--------LFLASNNGAEFYPWGLAAAAV----LEK 48

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL 116
            L + DV  V  N+ ++  VL+    +DIP  R++ T+VLA          +L++ G + 
Sbjct: 49  LLTDPDVIFVIQNAAYDVWVLRHH-GVDIPPGRYVDTMVLAHCVNPQQGDYSLESYGRS- 106

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +  +K++   E++         E     + P +     +   Y   DV +T + +  L 
Sbjct: 107 -VDDEKVDYRTEMVRAGLWEGGKEDPSVYDVPFNP----IMERYGLQDVRLTLKWWGELL 161

Query: 177 PLSSKEQEL---------WYLDQTINDRG-YCVDV--ALAHTLNQIVDVERTKLDQELE- 223
           P   ++  L           ++ TI+  G   +D    L      + D+E   L+     
Sbjct: 162 PHLERDARLADSYYNIHLPAVETTISLHGGLYIDRKATLKAATELMGDIEEGYLEFARRY 221

Query: 224 ------------------------SLTYGLVSSSRCLEKLK---TWLFLETGLHLED-LT 255
                                    +T   + S   +  L     W+  E        +T
Sbjct: 222 PKVYKMKWNDKTKEYDIVMKGGKPVMTAPNLQSPNDMASLLYMMGWVPTEFKRSTGKPVT 281

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA--VLKLNTLVEAMNSDGRLRGTLQFLGA 313
                ++L ++ +  P+  +                +L  L+E ++  G ++G     G 
Sbjct: 282 SQDVLKLLIADDETPPKLKECATFVQSLRSLVGIQNQLMQLLELVDDKGFVKGNWYQTG- 340

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           ++T R+S      QN                      T  P         VR C     G
Sbjct: 341 TQTFRYSSSSPNMQN--------------------FSTRHPKW----GKRVRECFTPPPG 376

Query: 374 KKLVVADLAGIEARVLAW----MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ- 428
             + + DL+ IE  ++AW    +AG+    +    G D +       + V       +  
Sbjct: 377 YVMFMGDLSQIELAIVAWYLEILAGDSAMAEGNRQGRDAHDVNTENWYGVTRESNPDEFK 436

Query: 429 --RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC-RWM 485
             R   K    A  Y      ++++A T G +      +++T     +    +      M
Sbjct: 437 QCRPRAKNGAFAANYG---AKYRRLAFTIGCSFEEAKDILETVERATQITPLKQLVWDTM 493

Query: 486 QENHPEHAIEDLFIGTA--------CERVKKAWRQKHSRVSELWNELHQAFEQTIENGK- 536
           +++     ++  +            C   +  +    S+         +     +  G  
Sbjct: 494 RQSRDVLPVQVPYSWRKTTKGFLYDCLNTRLFYPGIDSKERYERESSERKAFNALAQGGC 553

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
           A I RK  +  L Y++  +      L    ++ Y         +    R+ 
Sbjct: 554 ASILRKLCNQSLPYIQAGEGW-FAGLVHDEAIGYVKEQYADETIIHLNREW 603


>gi|303289002|ref|XP_003063789.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454857|gb|EEH52162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 942

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 94/332 (28%), Gaps = 72/332 (21%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSSSRCLEKLKTWLFLETGL 249
           +   G   D ++       +  E + ++ E        G   +    +++   L+   G 
Sbjct: 490 LESIGLPFDASVVEAAAVGLRRELSSIEAEASRSLPGRGQPLNLSSPQQVADVLYGFLGF 549

Query: 250 HLED------------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
                            T+    R  +S     P    V   R  A   AV   N     
Sbjct: 550 PPPSSNAMQGAKTAQLTTKDDVLRDFASRPNAHPLPGMVLRYR--AVTRAVAMCNAYASL 607

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
            ++DGRLR                                E +   T      +S+P+ L
Sbjct: 608 TDADGRLR-------------------------------CEWNNTRTATGRLSSSNPN-L 635

Query: 358 QIISDC---------------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
           Q +                  +R+  +A  GK L+  D + IE R LA +  ++      
Sbjct: 636 QAVGRAEHSAGAGEEELATFNLRAAFVAPPGKVLLAVDYSQIELRTLAHLTRDEKLCGVL 695

Query: 403 E---TGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
                G D++   +  S +      V+ + R   K     + Y  G      +A     +
Sbjct: 696 RVAGDGGDVFKMIWNLSRDAPRDAPVSAEDRDKAKRTVYGVLYGQGV---AGLAEKLACS 752

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
            +    L+        +   + F    +E   
Sbjct: 753 TDAAKGLIDA--LFRTFPGLKRFVVATKERAR 782


>gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100]
          Length = 702

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/397 (14%), Positives = 130/397 (32%), Gaps = 39/397 (9%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +++  +S  E++   L +    RG                 ++  + +  +     L  +
Sbjct: 208 RKIAEVSELEEQHMELYE----RGV------EEMAIPPAKRDKD-IAKLRDKYKKKLKFN 256

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                     L+   G+ L    E   +      K       + +    +A    V    
Sbjct: 257 PNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWEDYKTDKKALNYIVDHFP 316

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
              +A  S       ++    + T +    +       +  R H   +   T      ++
Sbjct: 317 -DQKAFASLLLEHSLVKTRKNNFTAKLLNFISN-----KDGRVHGSFNATGTETTRLSSN 370

Query: 353 DPDPLQIISDC-----------VRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
           +P+  Q+ +             ++     A E   L+  D + +E R+LA  AG++   +
Sbjct: 371 NPNMQQLPAKTSDPKRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQ 430

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G DL+  T +  + +   +V  + R   K +   + Y     +F   A    +++ 
Sbjct: 431 AFFDGADLHKETASIVWGMPVDKVPAEFRKKAKAVNFGIAYGETPFSF---APKHDMSVE 487

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
               + +       + +  N   ++ E H E A+ D F+ T  +  ++  R   S+  ++
Sbjct: 488 EAEDIFQ-----RYFANKPNIKTFIDETHRE-ALRDGFVDT-LQGHRRLIRDAFSKDKQI 540

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
            N   +    T   G          + +    +D N 
Sbjct: 541 QNGALRKSVNTKIQGTGAYCTNMSLIYIDQYIQDNNM 577


>gi|328724320|ref|XP_003248104.1| PREDICTED: DNA polymerase theta-like isoform 2 [Acyrthosiphon pisum]
          Length = 1583

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 121/369 (32%), Gaps = 54/369 (14%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +  +   +   G+ ++      LN  V+     + ++    + G+  + +     
Sbjct: 1202 DIEMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQS-GIRFNMQST--- 1257

Query: 240  KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              W  ++  L L D +      ++ + +KL+               + +    T+     
Sbjct: 1258 LEWAKVKKKLKLTDSSSHLLVELVKNWRKLS-----------CLRNTHINMYLTIQN--- 1303

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
               R+         S TGR S      QN+P+      E+                    
Sbjct: 1304 --DRVHCDSNTY--SNTGRISMHEPNLQNIPKDYVIENEIL------------------- 1340

Query: 360  ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
                +RS  +    + LV  D   IE RVLA ++ +   L A  +  D+++   ++  N+
Sbjct: 1341 ---SLRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNI 1397

Query: 420  APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
               +V  + R   K +   + Y  G      ++ T  +  +    L+       E++   
Sbjct: 1398 PEIEVCDELRQKTKQVCYGMLYGMGT---VTLSETLNITQDEAHKLI------SEFKRTF 1448

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                               + T   R++  +   +S V ++ +++ +    TI  G A  
Sbjct: 1449 PGVNKYFNECVLQCRSMGLVKTLSGRIRH-FPDINSEVPKIKSQVERQAINTIIQGSAAD 1507

Query: 540  ARKRRDVPL 548
              K   + +
Sbjct: 1508 VTKMAMIKV 1516



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 19/149 (12%)

Query: 525  HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                 + I   K       +      ++     L+  L SGR   + D+ +    + +  
Sbjct: 1434 QDEAHKLISEFKRTFPGVNKYFNECVLQCRSMGLVKTL-SGRIRHFPDINSEVPKIKSQV 1492

Query: 585  RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVLTVHDEIVCET 636
             +         +    I+Q  + D+    M+   K            +V+ +HDE++ + 
Sbjct: 1493 ER---------QAINTIIQGSAADVTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDV 1543

Query: 637  PDTD-EFNASMLYHLMTSNPSWAKGLPLK 664
             +T  +   S +   M +  +    LP+K
Sbjct: 1544 ENTVLDEACSTIIKTMEAAVNLCVPLPVK 1572


>gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon pisum]
          Length = 1691

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 121/369 (32%), Gaps = 54/369 (14%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +  +   +   G+ ++      LN  V+     + ++    + G+  + +     
Sbjct: 1310 DIEMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQS-GIRFNMQST--- 1365

Query: 240  KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              W  ++  L L D +      ++ + +KL+               + +    T+     
Sbjct: 1366 LEWAKVKKKLKLTDSSSHLLVELVKNWRKLS-----------CLRNTHINMYLTIQN--- 1411

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
               R+         S TGR S      QN+P+      E+                    
Sbjct: 1412 --DRVHCDSNTY--SNTGRISMHEPNLQNIPKDYVIENEIL------------------- 1448

Query: 360  ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
                +RS  +    + LV  D   IE RVLA ++ +   L A  +  D+++   ++  N+
Sbjct: 1449 ---SLRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNI 1505

Query: 420  APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
               +V  + R   K +   + Y  G      ++ T  +  +    L+       E++   
Sbjct: 1506 PEIEVCDELRQKTKQVCYGMLYGMGT---VTLSETLNITQDEAHKLI------SEFKRTF 1556

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                               + T   R++  +   +S V ++ +++ +    TI  G A  
Sbjct: 1557 PGVNKYFNECVLQCRSMGLVKTLSGRIRH-FPDINSEVPKIKSQVERQAINTIIQGSAAD 1615

Query: 540  ARKRRDVPL 548
              K   + +
Sbjct: 1616 VTKMAMIKV 1624



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 19/149 (12%)

Query: 525  HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                 + I   K       +      ++     L+  L SGR   + D+ +    + +  
Sbjct: 1542 QDEAHKLISEFKRTFPGVNKYFNECVLQCRSMGLVKTL-SGRIRHFPDINSEVPKIKSQV 1600

Query: 585  RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVLTVHDEIVCET 636
             +         +    I+Q  + D+    M+   K            +V+ +HDE++ + 
Sbjct: 1601 ER---------QAINTIIQGSAADVTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDV 1651

Query: 637  PDTD-EFNASMLYHLMTSNPSWAKGLPLK 664
             +T  +   S +   M +  +    LP+K
Sbjct: 1652 ENTVLDEACSTIIKTMEAAVNLCVPLPVK 1680


>gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula]
 gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula]
          Length = 600

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 116/692 (16%), Positives = 191/692 (27%), Gaps = 195/692 (28%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           D+   G+ +  E  C+     G+D     V L D +  P   Q  ++        +V HN
Sbjct: 37  DIETPGLDRNFEINCLTAAWIGWDGTIESV-LLDPIRWPAHRQAARDVFARA-CKLVFHN 94

Query: 73  SYFERT-VLKACFNLDIPIHRWICTLVLARSN-------GLPSALKAVGEALKLSSQKME 124
           + F+   +          I +   T++LAR          LP           L    + 
Sbjct: 95  ASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLLGLVDVA 154

Query: 125 EGKELIARFCKGETHECLYDR---NKPNHREA---------------------WRLFGEY 160
            G E   +    +T +  Y+    + P +R+                      W     +
Sbjct: 155 GGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVEWTTSHPF 214

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   T   E  + LE    +E   W + Q  + RG  VD        +       +L+ 
Sbjct: 215 AEFGATTEAEALEVLE---VQEIAHWVMLQR-SARGLAVDRDYLDEYRE--REHDKRLEH 268

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQAIQ 275
                 Y L   +     L  WL     L            +  +  L +       A  
Sbjct: 269 AAFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPVAAA-- 326

Query: 276 VFNNRMRASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
               R  A    VL     +       GR    +  LGAS                    
Sbjct: 327 ---QRALAVSDKVLGYLEKVARQAAVTGRCHPQVAILGAS-------------------- 363

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                              P+  Q   D     +I  +G+ L   D A IE   +A MAG
Sbjct: 364 ----------ATGRMSYGSPELQQFPKDARP--IIVDDGQGLTSVDWAQIEPVTMALMAG 411

Query: 395 EQWKLKAF-ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++  L  F E   DLY             +     R + KV+ LA  Y  G         
Sbjct: 412 DREFLAPFFEKDADLYE---------PIMRACGIDRPMAKVILLATMYGQG--------- 453

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                   A +  R +       A           ++++     
Sbjct: 454 ------------------------ARSMARRIGHTEESAA-----------QIRRQMLAA 478

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                +   ++       I +G+ +    R                 +LP  +   YR  
Sbjct: 479 MPASRDFMAKVESI---AITHGRIVTGGGR-----------------ILPVDQQGSYR-- 516

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDE 631
                                      I Q  + D+LA  ++   + G    + L +HDE
Sbjct: 517 -----------------------AVNYICQGSAYDVLAHTIVRLDEVGLSGHVQLAMHDE 553

Query: 632 IVCETPDTDEFNASMLYHLMTSNPS----WAK 659
           +V +T       A+ + H+M + P     WAK
Sbjct: 554 LVVDTD-----VAAEVEHIMMTPPEFLTRWAK 580


>gi|170056642|ref|XP_001864122.1| DNA polymerase theta [Culex quinquefasciatus]
 gi|167876219|gb|EDS39602.1| DNA polymerase theta [Culex quinquefasciatus]
          Length = 1177

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 79/490 (16%), Positives = 150/490 (30%), Gaps = 98/490 (20%)

Query: 179  SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
            +S+E  +      +   G+  D A    L   +   + ++ + +  L  G         +
Sbjct: 767  TSREMPIHVALARMELVGFPADGAKLGALIARLKAAKERIAERVRQLNGGRKLDFGSTRE 826

Query: 239  LKTWLFLETGLHLE-DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            +   L     +  + +    T ++VL      +P A  V   R   S  +   +  L   
Sbjct: 827  VAAVLK----VPKDRNGRARTSRQVLERID--SPLAALVIAWRKIDSNLSRT-IEPLGRG 879

Query: 298  MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
            +    R+ G+      + TGR S      Q                T +           
Sbjct: 880  IVGGRRIYGSSYCF--TSTGRISMHEPNLQ----------------TVVKDFRVEIEPGT 921

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
              +  C  +       K L+ AD   +E  VL  ++ ++  L   ++G+D++    A+  
Sbjct: 922  VEMFSCRGTFACEDSSKVLISADFCQLELCVLTHLSQDRKLLAVMKSGKDVFRGIAAKWN 981

Query: 418  NVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            ++    +V+ + R   K +   + Y  GA   + MA+   ++ +T   L+      E++ 
Sbjct: 982  HIEDEREVSDELRNYTKAIVYGVIYGMGA---RSMAAELNVDEDTARTLM------EQFH 1032

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                  R   E   +   E  +I T   R ++     HS  S   +E  +    T   G 
Sbjct: 1033 ATYPEIRRYAEKVVQVTRERGYIETLTGR-RRYLPAIHSTDSTKRSEAERQAVCTTVQGS 1091

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            A    K                                      N   R       Y  +
Sbjct: 1092 AADILK--------------------------------------NAILRMARNLRKYRER 1113

Query: 597  LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655
            L                +         +VL +HDE++ E P         +L   M +  
Sbjct: 1114 L---------------ALGEVE-----LVLHMHDELIFEAPRDQARKVGKILKSSMENCA 1153

Query: 656  SWAKGLPLKA 665
            +    LPL+ 
Sbjct: 1154 N--LSLPLRV 1161


>gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511]
 gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511]
          Length = 730

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/465 (13%), Positives = 138/465 (29%), Gaps = 78/465 (16%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVAL 203
            +   Y  GD      I   L  + +K Q++W+               I   G       
Sbjct: 157 EILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIESNGIYAQTDY 216

Query: 204 AH---------------------TLNQIVDVERTKLDQELESLT---------------- 226
                                   ++++ +      ++ +E +                 
Sbjct: 217 MEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAVPPAKRDDDIAKLRNK 276

Query: 227 --YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               L  +          L+   G+ L    E   +      K       + +    +A 
Sbjct: 277 YKNKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWEDYKTDKKAL 336

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
              V       +   S       ++    + T +    +       +  R H   +   T
Sbjct: 337 NYIVDHFP-DQKVFASLLLEHSLVKTRKNNFTAKLLNFISN-----KDGRVHGSFNATGT 390

Query: 345 HLPTSITSDPDPLQIISDC-----------VRSCV-IASEGKKLVVADLAGIEARVLAWM 392
                 +++P+  Q+ +             ++     A E   L+  D + +E R+LA  
Sbjct: 391 ETTRLSSNNPNMQQLPAKTSNPKRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALA 450

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           AG++   +AF  G DL+  T +  + +   +V  + R   K +   + Y     +F   A
Sbjct: 451 AGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAEFRKKAKAVNFGIAYGETPFSF---A 507

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               +++     + +       + +  N   ++ E H E A+ D F+ T  +  ++  R 
Sbjct: 508 PKHDMSVEEAEDIFQ-----RYFANKPNIKTFIDETHRE-ALRDGFVDT-LQGHRRLIRD 560

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
             S+  ++ N   +    T   G          + +    +D N 
Sbjct: 561 AFSKDKQIQNGALRKSVNTKIQGTGAYCTNMSLIYIDQYIQDNNM 605


>gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 798

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 131/424 (30%), Gaps = 78/424 (18%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP 106
                +   +K  LE+  V  +AHN  F+  V        I +  W   T ++A      
Sbjct: 339 AKAEALQGQVKRFLEDERVRKLAHNLKFDHQVSAR---EGIEVRGWLHDTQLMAFFADEN 395

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGD 164
              K++ +  ++   +M    +             +   +  +       +G   Y  GD
Sbjct: 396 MMSKSLDDCTRVWVPEMAGYADNFNMAIDKSKMMDVPPDDILDADGKVVQYGMRNYAGGD 455

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVD 212
                 + +RL+ +  ++   +   + I               G  VD     +L   V 
Sbjct: 456 TDACLRLAQRLDKILREDPRQYQCYRRIQMPAIIAFAKVVERYGLSVDKEHLRSLADQVA 515

Query: 213 VERTKLDQELESLT----------YGLVSSSRCLEKLKTWLFLE--TGLHLEDLTETTCQ 260
                   E+  L            G   S      ++  LF +   GL  +  T++T +
Sbjct: 516 QYTDAKYDEIVRLIPPALRRDYLRRGEEISFTRDVVMRDILFGKKGFGLTPKVFTKSTAK 575

Query: 261 ----------------RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA------M 298
                                      + +  + + ++  +     + +  +       +
Sbjct: 576 LPPAQRVPSVSTKDHMPYFEDAPGNAGRFVTGYIDFLKQQKLITTYIGSEEKQSGFWQYI 635

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DG +  + + L A+ TGR +      QN P+  R  +  +                  
Sbjct: 636 APDGAIYPSYK-LHATVTGRSASDNPNGQNFPKRGRFAKSYN------------------ 676

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                      A  G KLV ADL+ IE R+ AWMA E   L+ +    D++ +T A +  
Sbjct: 677 -------KVFKARPGYKLVSADLSQIELRIAAWMANEPEMLRIYRADGDIHASTGAATAG 729

Query: 419 VAPA 422
               
Sbjct: 730 WTDE 733


>gi|149408291|ref|YP_001294570.1| hypothetical protein ORF062 [Pseudomonas phage M6]
          Length = 664

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 117/701 (16%), Positives = 208/701 (29%), Gaps = 122/701 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICK------YAEDVCVILFAFGFDDHPVELWDCVH--DPVM 53
             + ID ETR P DL K G         Y     +   +F  +D P       H     +
Sbjct: 31  KRVAIDCETRDP-DLRKLGPGAGRRPNSY-----ITGISFAIEDGPGGYLPIRHEGGGNL 84

Query: 54  P-QVLKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
           P + +   L           V  N  ++   L       I   R      +  ++ L   
Sbjct: 85  PLEGVLAYLRAQAKVFTGDLVGANLPYDLDFLA---GDGIEFERVRYFRDIQIADPLICE 141

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV- 167
           L        ++ +    GK+      +    +   D  K       +  G+Y + D  + 
Sbjct: 142 LHDSYSMQAIAERWGFHGKDEA--LLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRLP 199

Query: 168 -------TREIFKR-LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                   REI ++ L  + + E +L  +   +  RG  +D      + +    + T+  
Sbjct: 200 LNILRRQEREIDEQDLWGVYNLESKLLPILTGLRRRGVRIDCDRLDMIERWALEKETEAL 259

Query: 220 QELESLTYG--LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
            ++ S+T     V      E +   L    G+ L   ++            +      + 
Sbjct: 260 AQVRSITGHRIAVGDVWKPEVIAPAL-EHIGIKLNKTSQGKPNIDKELLGSIDHPVADLL 318

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
               + ++      +++ + M  +GRL GT   L                   R  +  E
Sbjct: 319 ERARKVNKLRTTFASSVRDHM-VNGRLHGTFNQL-------------------RRQKDDE 358

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCV-----RSCVIASEGKKLVVADLAGIEARVLAWM 392
                        +  P+  Q  +        R+  +  EG+     D +  E R+    
Sbjct: 359 SDGTAGAAYGRLSSEHPNLQQQPARDEFAMMWRAIYLPEEGQHWASNDYSQQEPRMAVHY 418

Query: 393 A-------GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
           A       G Q  L A     D Y        +   A +   +R   K + L L Y  G 
Sbjct: 419 ACLAKDLIGHQAWLSAI-EARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLGLSYGMG- 476

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               KM    GL       ++       +  D  +     Q    E A      G   + 
Sbjct: 477 --GAKMCRKLGL-----PTMMAVRGPRFQLFDVNSP--EGQRLVAEGARRFEAAGPEGQA 527

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           +   +  K   + +L        +  +     +  R+ R                  P  
Sbjct: 528 LLDTFDHKVPFIKKLAKACEARAK-AVGYITTLSGRRCRF-----------------PKD 569

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
           +   Y                   ++T+ G     ++Q  S D     M+   +AG DI+
Sbjct: 570 KDGNY-------------------DWTHKG--LNRLIQGSSADQTKMAMVACAEAGLDII 608

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           + VHDEI     D  E  A+   H+M +       LP K +
Sbjct: 609 IQVHDEIAFSVHDMKE--AAEAAHIMRTCTP--LELPSKVD 645


>gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis]
          Length = 158

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R    A EG  ++ AD + IE R++A    ++  +KAF+  +DL+  T +      
Sbjct: 1   PKDLRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKN 60

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAPEEWEDAE 479
             ++TK++R + K +   L Y    K+    A S  G+N+          +  E ++D +
Sbjct: 61  YEEITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIK 120

Query: 480 NFCRWMQENHPEHAI 494
            +    + +   H  
Sbjct: 121 KWHEETKNHLNHHGY 135


>gi|116517384|gb|ABJ99064.1| Hypothetical protein W03A3.2 [Caenorhabditis elegans]
          Length = 1540

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 77/469 (16%), Positives = 137/469 (29%), Gaps = 134/469 (28%)

Query: 196  GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--HLED 253
            G   D AL ++    +  +   L++ +  L YG   +     ++   LF   GL      
Sbjct: 1167 GIVFDQALCNSFIYKIRKQIENLEENIWRLAYG-KFNIHSSNEVANVLFYRLGLIYPETS 1225

Query: 254  LTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
              +       T + +L       P   ++   R     +    L  L + +   GR+   
Sbjct: 1226 GCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQH-TLTQCLMPLAKFI---GRIHCW 1281

Query: 308  LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
             +    + TGR    V   QN+P+                  I+SD           R  
Sbjct: 1282 FEMC--TSTGRILTSVPNLQNVPKR-----------------ISSD-------GMSARQL 1315

Query: 368  VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
             IA+    L+ AD   +E RVLA ++ +   +    +  DL+    +  +N     V   
Sbjct: 1316 FIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEE-LSIQWNFPRDAV--- 1371

Query: 428  QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
                 K +   L Y              G+   + + L          EDAE   +    
Sbjct: 1372 -----KQLCYGLIY--------------GMGAKSLSEL-----TRMSIEDAEKMLKAFFA 1407

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              P   +      T  +  K                         E   + I  +R  + 
Sbjct: 1408 MFP--GVRSYINETKEKVCK-------------------------EEPISTIIGRRTIIK 1440

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                                     +G  R+ +                     +Q  + 
Sbjct: 1441 AS----------------------GIGEERARIERV-------------AVNYTIQGSAS 1465

Query: 608  DILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASM-LYHLM 651
            +I    +++        G  IVLT+HDE++ E P+     AS  + + M
Sbjct: 1466 EIFKTAIVDIESKIKEFGAQIVLTIHDEVLVECPEIHVAAASESIENCM 1514


>gi|86563272|ref|NP_498250.3| POLQ (DNA polymerase theta) homolog family member (polq-1)
            [Caenorhabditis elegans]
          Length = 1661

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 77/469 (16%), Positives = 137/469 (29%), Gaps = 134/469 (28%)

Query: 196  GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--HLED 253
            G   D AL ++    +  +   L++ +  L YG   +     ++   LF   GL      
Sbjct: 1288 GIVFDQALCNSFIYKIRKQIENLEENIWRLAYG-KFNIHSSNEVANVLFYRLGLIYPETS 1346

Query: 254  LTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
              +       T + +L       P   ++   R     +    L  L + +   GR+   
Sbjct: 1347 GCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQH-TLTQCLMPLAKFI---GRIHCW 1402

Query: 308  LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
             +    + TGR    V   QN+P+                  I+SD           R  
Sbjct: 1403 FEMC--TSTGRILTSVPNLQNVPKR-----------------ISSD-------GMSARQL 1436

Query: 368  VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
             IA+    L+ AD   +E RVLA ++ +   +    +  DL+    +  +N     V   
Sbjct: 1437 FIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEE-LSIQWNFPRDAV--- 1492

Query: 428  QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
                 K +   L Y              G+   + + L          EDAE   +    
Sbjct: 1493 -----KQLCYGLIY--------------GMGAKSLSEL-----TRMSIEDAEKMLKAFFA 1528

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              P   +      T  +  K                         E   + I  +R  + 
Sbjct: 1529 MFP--GVRSYINETKEKVCK-------------------------EEPISTIIGRRTIIK 1561

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                                     +G  R+ +                     +Q  + 
Sbjct: 1562 AS----------------------GIGEERARIERV-------------AVNYTIQGSAS 1586

Query: 608  DILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASM-LYHLM 651
            +I    +++        G  IVLT+HDE++ E P+     AS  + + M
Sbjct: 1587 EIFKTAIVDIESKIKEFGAQIVLTIHDEVLVECPEIHVAAASESIENCM 1635


>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 94/352 (26%), Gaps = 116/352 (32%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386
             R H  L+ I T         P              +R   +A+ GK LVVAD   +E 
Sbjct: 490 DGRVHCSLN-INTETGRLSARRPSLQNQPALEKDRYKIRQAFVAAPGKSLVVADYGQLEL 548

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ------------------ 428
           R+LA +A  +    AF+ G D +  T    +      V K++                  
Sbjct: 549 RLLAHLADCKSMKAAFKAGGDFHSRTAMNMYPHVREAVEKERVLLEWESHGKPPAPLLKD 608

Query: 429 -----RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   K++  ++ Y   A     +A    + ++                       
Sbjct: 609 IFGSERRKAKMLNFSIAYGKTA---MGLAKDWKVKVDEAKA------------------- 646

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                     W      V   W +  +    T      ++ R R
Sbjct: 647 ----------------------TVDLWYSDRPEVLA-WQKERKQEAHTSLRVHTLLGRAR 683

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                             LP   S          R+ +NT                   V
Sbjct: 684 H-----------------LPDINSSNALLRSHMERAAINTP------------------V 708

Query: 603 QAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY 648
           Q  + D+    M+   +       G+ ++L VHDE++ E P      A  L 
Sbjct: 709 QGSAADVAMCAMLEINRNSKLRELGWKLLLQVHDEVILEGPSESAQEAKELV 760



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 77/266 (28%), Gaps = 63/266 (23%)

Query: 37  FDDHPVELWD--CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           F +    LW         + +V +   E+  +  V HN  F++ +L     +  P   + 
Sbjct: 60  FGNGKNRLWVDVLDGGDGILEVFRRYFEDPSIKKVWHNYSFDKHILSRH-GIH-PQGFYA 117

Query: 95  CTLVLARSNGLPSALKAVG---EALKLSSQKME--------------EGKELIARF---- 133
            T+ LAR +         G   E L    + M+               GK+ +       
Sbjct: 118 DTMHLARLHDSARRGAKGGYSLEVLSADEKVMDGYLGHLTEEDDITLVGKKSMKELFGKA 177

Query: 134 -CKGETHECLYDRNKP--------NHREAWRLFGEYCKGDVTVTREIFKRLE------PL 178
             K +          P          R+AW  +  +   D   T  +F  L+      P 
Sbjct: 178 NLKKDGSPGKIKTIPPVDELQRDGELRDAWIHYSTF---DTVCTWRLFVSLQHKLSNTPW 234

Query: 179 S-----------SKEQELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +              ++ W     +   +   G  VD     T+ ++   ++        
Sbjct: 235 NVVDLKEKGSMYDFYEKYWRPFGEVLVQMEADGMLVDCDHLATVEKVARAQQEISVSRFR 294

Query: 224 SLT-----YGLVSSSRCLEKLKTWLF 244
                      + +     +++ +LF
Sbjct: 295 KWAAKYCPDAAMMNVGSDAQIRQFLF 320


>gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort]
 gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort]
          Length = 1067

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 65/446 (14%), Positives = 130/446 (29%), Gaps = 73/446 (16%)

Query: 155 RLFGEYCKGDVTVTREIF-------------KRLEPLSSKEQELWYLDQTINDRGYCVDV 201
            L   Y  GD    R I+             K LE L+     L      I   G   D 
Sbjct: 487 ELMHPYASGDTDACRRIYCDVINKLKEQNRPKALELLTKSYPRLTRTLARIQSNGMYTDT 546

Query: 202 ALAHTLNQIVDVERTKLDQELES---------------LTYGLVSSSRCLEKLKTWL--- 243
              + ++     E  K++Q+L S               +       S   ++    +   
Sbjct: 547 EYLYMIDDKYSNELDKIEQKLRSHWVIKEFEDTRYDLYMAGVEEFESNPPKERNKSITQY 606

Query: 244 ---FLETGLHLEDLTETTCQRVL-----------SSNKKLTPQAIQVFNNRM-----RAS 284
              F   G   +  +      VL               K  P    V  +++     + +
Sbjct: 607 RDKFKNGGWKFKPSSGAHKGEVLFSILGISLPYEKEFVKDKPFTKGVKEDKLTWEDYKTN 666

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR-WSGCVFPPQNLPRPSRSHEELDQII 343
           +S +  +   +E       +   ++     +T R       P       S  H   +   
Sbjct: 667 KSTIDYIIDNIELKKDCIDVVVLMKKYAELQTKRNSFTKKLPNLVNKETSTLHGNFNSTG 726

Query: 344 THLPTSITSDPDPLQIISDC-----------VRSCVIAS-EGKKLVVADLAGIEARVLAW 391
           T      +S P+  Q+ S             V+    +  +   +   D + IE +++  
Sbjct: 727 TASARLSSSAPNLQQLPSHTSDVNKFDYHYPVKRAFKSRYKNGIMTELDFSAIEMKIIGL 786

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
              +   L++F  GED++ +T +  +N     +T ++R   K +   + Y     +F   
Sbjct: 787 YTKDPEMLESFLKGEDIHKSTASIVYNKPVEDITAEERQNTKKVNFGIAYGESPFSFSG- 845

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                + +     +   N         +N      +   +H   +   G      ++  R
Sbjct: 846 --KNNMTVEEAEEI--FNKYFNTKPSVKNSIDATHDFVQKHGYVEAMQGH-----QRFIR 896

Query: 512 QKHSRVSELWNELHQAFEQTIENGKA 537
              S   +  N+  +    TI    A
Sbjct: 897 DAQSSDKKKRNQALRQSFNTIIQSTA 922


>gi|298528005|ref|ZP_07015409.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511657|gb|EFI35559.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 914

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 119/367 (32%), Gaps = 48/367 (13%)

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +  +G  +D          VD +  +L   + S     ++ S     LK  LF E    
Sbjct: 505 EMEYQGIRIDREKLEDFIARVDAKIPELKDRIFSSIGRKINLSSSSGDLKRVLFKEKRYE 564

Query: 251 LEDLTET----TCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
               T+T    T +  +    +K   + I+      R  +            +  DGRL 
Sbjct: 565 PVKYTKTGDFSTDKNSMEVLYEKNEDEFIRDLLILRRVEKVRETYFINWRGEIEYDGRLH 624

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            +L   G +     +                               + P  L+ I   V+
Sbjct: 625 FSLNQHGTATYRLSANKGLQ--------------------------NAPAYLKEIDLNVK 658

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           S  +   E   +   D+A  E RVL   + ++  ++AF  G D++  T A+  +    ++
Sbjct: 659 SLFLPDSEEYDIFDLDIANAELRVLCGYSKDETLIEAFNQGLDIHSLTAAKISDFTYEEI 718

Query: 425 -------TKDQ---RAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAPE 473
                  T +Q   R +GK +     Y  GA +  K   + + + ++        N   E
Sbjct: 719 KAAKEDKTSEQHKLRQLGKKINFGTVYSMGATSLSKQLWAESRIKVSEDEAKQYLNKFFE 778

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
           E+   + +    +     H     F+ T   R ++ +        + +    QA    I+
Sbjct: 779 EYPKVKEYMEKTRAFARAH----RFVYTYTGR-RRRFPMLGVDNHQKFKAFRQAINCRIQ 833

Query: 534 NGKAIIA 540
              A I 
Sbjct: 834 TTSADIV 840


>gi|221501798|gb|EEE27554.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 932

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 134/456 (29%), Gaps = 66/456 (14%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            + ++PL ++E  +  L   ++  G  +       L   +D     +++E+  +      
Sbjct: 438 HQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGTSCV 497

Query: 232 SSRCLEKLKTWLFLETGLHLE-----------------DLTETTCQRVLSSNKKLTPQAI 274
                 +L + LF    L L                   L  +T + VL     L P   
Sbjct: 498 QVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHPVVP 557

Query: 275 QVFNNRMRASRSAVL---------------------------KLNTLVEAMNS---DGRL 304
            + N R  A   +                             KL    E       D   
Sbjct: 558 LIQNFRSLAKLRSTYLESTAALSLSSSCALSAPEGAPFKVAFKLYDREEETCEPASDSET 617

Query: 305 RGTLQFLGASRTG---RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           +   +   AS T      +   +P     +  R     +Q  T      +S P+ LQ I 
Sbjct: 618 QTGEEGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPN-LQNIP 676

Query: 362 DCV--RSCV---IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
             V  R      +      +V AD A IE R+L         +       DLY    +  
Sbjct: 677 KAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVREKSFSSLVHTRCAPIDLYREMASLY 736

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
             +   +VTK+ R   KV  LAL Y  G       A    ++L   +     +     + 
Sbjct: 737 AEIPSHEVTKELRDKVKVTCLALIYGSGTCTI---ARQMNISLAAASAF--RSKFLFVFP 791

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           D  +F R +         ED F+ T   R ++   +  S  S +     +    +   G 
Sbjct: 792 DVSHFIRSIIA----KGREDGFVTTLTGR-RRYVPEAKSNSSHVRALGERLSVNSCIQGS 846

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           A    K   + L             LP    L   D
Sbjct: 847 ASDIMKIAMMRLQAELLSFPWAPDALPPRLLLSVHD 882



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 459 LNTFAHLVKTNSAP-EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             +F+ LV T  AP + + +  +    +  +     + D    T    +   +      +
Sbjct: 712 EKSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKELRDKVKVTCLALI---YGSGTCTI 768

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +   N    A          +       +  +  K  ++  +  L +GR     +  +N 
Sbjct: 769 ARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTL-TGRRRYVPEAKSNS 827

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DIVL 626
           S++     +L+           + +Q  + DI+   MM                   ++L
Sbjct: 828 SHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLL 878

Query: 627 TVHDEIVCET 636
           +VHDE+V   
Sbjct: 879 SVHDELVLHC 888


>gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 661

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 103/374 (27%), Gaps = 86/374 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET S   +             ++  +F   +             +P+  +EAL
Sbjct: 348 KILSLDTETTSTSPME----------AELVGLSFSVKEKEAFYV------AIPKDREEAL 391

Query: 62  ----------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK 110
                     E+ ++  V  N  ++  VL+   N  + I   +   +LA     P     
Sbjct: 392 QYVNIFKPLYEDPEILKVGQNIKYDYVVLR---NYGVDIQGKMFDTMLAHYLIQPELRHN 448

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A  L   +    +ELI         +    +N  +         EY   D  +T  
Sbjct: 449 MDYMAETLLHYQTMHIEELIG-------PKGKGQKNMRDLSP--EEIYEYAAEDADITLR 499

Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +   LEP   +          E  L  +   +   G  +D    + + +       + ++
Sbjct: 500 LKNVLEPQLKEVGAKSLFWDIEMPLVKVLADMELNGVLLDTESLNEIERTFTERMQQYER 559

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQ 275
               L  G   +    +++   LF +   +     T+T    T + VL   K   P    
Sbjct: 560 HAFELA-GEEFNISSPKQVGEILFGKMKIVDKPKKTKTGQFVTSEEVLLQLKDKAPIVED 618

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +                                 + G  +         P    PR    
Sbjct: 619 IL-------------------------------NYRGMKKLLGTYVEALPKLINPRTGHI 647

Query: 336 HEELDQIITHLPTS 349
           H   +Q +T     
Sbjct: 648 HTSFNQAVTATGRL 661


>gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
 gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
          Length = 115

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
          M TL ID ET S + L K G  +Y E  +  ++LFA+  D+ PV++ D      +P+ + 
Sbjct: 1  MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60

Query: 59 EALENTDVTIVAH 71
           ALE+  V   A 
Sbjct: 61 LALEDEFVIKWAW 73


>gi|221480621|gb|EEE19073.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 935

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 137/459 (29%), Gaps = 72/459 (15%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            + ++PL ++E  +  L   ++  G  +       L   +D     +++E+  +      
Sbjct: 441 HQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGTSCV 500

Query: 232 SSRCLEKLKTWLFLETGLHLE-----------------DLTETTCQRVLSSNKKLTPQAI 274
                 +L + LF    L L                   L  +T + VL     L P   
Sbjct: 501 QVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHPVVP 560

Query: 275 QVFNNRMRASRSAVL---------------------------KLNTLVEAMNS---DGRL 304
            + N R  A   +                             KL    E       D   
Sbjct: 561 LIQNFRSLAKLRSTYLESTAALSLSSSCALSAPEGAPFKVAFKLYDREEETCEPASDSET 620

Query: 305 RGTLQFLGASRTG---RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           +   +   AS T      +   +P     +  R     +Q  T      +S P+ LQ I 
Sbjct: 621 QTGEEGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPN-LQNIP 679

Query: 362 DCV--RSCV---IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG---EDLYVTTY 413
             V  R      +      +V AD A IE R+   + GE+       T     DLY    
Sbjct: 680 KAVNCREAFRDDVQDGSAVVVAADYAQIEMRL---LVGEKSFSSLVHTRCAPIDLYREMA 736

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +    +   +VTK+ R   KV  LAL Y  G       A    ++L   +     +    
Sbjct: 737 SLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI---ARQMNISLAAASAF--RSKFLF 791

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            + D  +F R +         ED F+ T   R ++   +  S  S +     +    +  
Sbjct: 792 VFPDVSHFIRSIIA----KGREDGFVTTLTGR-RRYVPEAKSNSSHVRALGERLSVNSCI 846

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            G A    K   + L             LP    L   D
Sbjct: 847 QGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLSVHD 885



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 25/192 (13%)

Query: 457 LNLNTFAHLVKTNSAP-EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           +   +F+ LV T  AP + + +  +    +  +     + D    T    +   +     
Sbjct: 713 VGEKSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKELRDKVKVTCLALI---YGSGTC 769

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++   N    A          +       +  +  K  ++  +  L +GR     +  +
Sbjct: 770 TIARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTL-TGRRRYVPEAKS 828

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DI 624
           N S++     +L+           + +Q  + DI+   MM                   +
Sbjct: 829 NSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRL 879

Query: 625 VLTVHDEIVCET 636
           +L+VHDE+V   
Sbjct: 880 LLSVHDELVLHC 891


>gi|237845437|ref|XP_002372016.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211969680|gb|EEB04876.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 938

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 137/459 (29%), Gaps = 72/459 (15%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            + ++PL ++E  +  L   ++  G  +       L   +D     +++E+  +      
Sbjct: 444 HQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGTSCV 503

Query: 232 SSRCLEKLKTWLFLETGLHLE-----------------DLTETTCQRVLSSNKKLTPQAI 274
                 +L + LF    L L                   L  +T + VL     L P   
Sbjct: 504 QVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHPVVP 563

Query: 275 QVFNNRMRASRSAVL---------------------------KLNTLVEAMNS---DGRL 304
            + N R  A   +                             KL    E       D   
Sbjct: 564 LIQNFRSLAKLRSTYLESTAALSLSSSCALSAPEGAPFKVAFKLYDREEETCEPASDSET 623

Query: 305 RGTLQFLGASRTG---RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           +   +   AS T      +   +P     +  R     +Q  T      +S P+ LQ I 
Sbjct: 624 QTGEEGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPN-LQNIP 682

Query: 362 DCV--RSCV---IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG---EDLYVTTY 413
             V  R      +      +V AD A IE R+   + GE+       T     DLY    
Sbjct: 683 KAVNCREAFRDDVQDGSAVVVAADYAQIEMRL---LVGEKSFSSLVHTRCAPIDLYREMA 739

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +    +   +VTK+ R   KV  LAL Y  G       A    ++L   +     +    
Sbjct: 740 SLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI---ARQMNISLAAASAF--RSKFLF 794

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            + D  +F R +         ED F+ T   R ++   +  S  S +     +    +  
Sbjct: 795 VFPDVSHFIRSIIA----KGREDGFVTTLTGR-RRYVPEAKSNSSHVRALGERLSVNSCI 849

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            G A    K   + L             LP    L   D
Sbjct: 850 QGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLSVHD 888



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 25/192 (13%)

Query: 457 LNLNTFAHLVKTNSAP-EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           +   +F+ LV T  AP + + +  +    +  +     + D    T    +   +     
Sbjct: 716 VGEKSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKELRDKVKVTCLALI---YGSGTC 772

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++   N    A          +       +  +  K  ++  +  L +GR     +  +
Sbjct: 773 TIARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTL-TGRRRYVPEAKS 831

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DI 624
           N S++     +L+           + +Q  + DI+   MM                   +
Sbjct: 832 NSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRL 882

Query: 625 VLTVHDEIVCET 636
           +L+VHDE+V   
Sbjct: 883 LLSVHDELVLHC 894


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 110/351 (31%), Gaps = 69/351 (19%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEAR 387
            R H  L+ I T         P      +       +R    A  G  LVVAD   +E R
Sbjct: 661 GRVHGALN-INTETGRLSARRPSLQNQPALEKDRYGIRKAFTAGPGNVLVVADYGQLELR 719

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA MAG +   +AFE G D +  T    ++     + K +          +  + G   
Sbjct: 720 LLAHMAGCKSMQEAFEAGGDFHSRTALGMYSNIKDAIAKGE----------VVLEYGE-- 767

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEE-WEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                   G++      LVK   A E       NF     +     + +           
Sbjct: 768 -----QEEGVDEKDRPALVKDVFASERRKAKVLNFSIAYGKTAHGLSKDWGTSLEEAANT 822

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + W      V + W E+ +      +N    +  + R++P    K +            
Sbjct: 823 VELWYSDRPEVRD-WQEVQK-KMAVEKNLVRTLLGRVRNLPDASSKNEA----------- 869

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                     R+ +NT                   +Q  + DI    M+   +       
Sbjct: 870 ----FKSHALRASINTP------------------IQGGAADIAMLAMLQIQRCPRLKEL 907

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA----KGLPLKAEG 667
           GY +++ +HDE++ E P+  +  A  L      NP         + L  +G
Sbjct: 908 GYKLLMQIHDEVILEGPEEHKDEALALTKYHMENPFPGHVNLLDVALAVDG 958



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 81/285 (28%), Gaps = 65/285 (22%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI---PIHRWICTLVLARSN 103
                 + +V KE  EN +V  V HN  F+R V++    + +            +   + 
Sbjct: 250 LRGGEGVWEVFKEYFENPNVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWNSNR 309

Query: 104 GLPSAL------------KAVGEALKLSSQKMEEGKELIARFCKGE-THECLYDRN--KP 148
           GL                    E L   ++ M   + +   F K +   +    +    P
Sbjct: 310 GLDGGYSLEALSSSAEVMSDCAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTIILP 369

Query: 149 ---------NHREAWRLFGEYCKGDVTVTREIFKRLE-----------PLSSKE------ 182
                      R+ W    EY   D   T  + + LE           P+ + +      
Sbjct: 370 PVEEIQEDVEQRDKW---IEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKC 426

Query: 183 ---QELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT----- 226
               + +         L   +   G  VD        ++   ++   ++   +       
Sbjct: 427 VTLWDFYTFYLAEFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAKCE 486

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              + +     +++  LF   G   +   +   + V    ++ T 
Sbjct: 487 GAKLMNVGSGLQIRQLLFA--GAKNKRRDKPGVELVREFTQESTE 529


>gi|20095249|gb|AAL85287.2|AF465603_1 polymerase [Vibrio phage 1]
          Length = 786

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 90/569 (15%), Positives = 179/569 (31%), Gaps = 93/569 (16%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           +  +D P E        ++   +K  L +  V +   N  ++   +K  +N++    +  
Sbjct: 190 YSTEDQPKE------GDLLHDQIKWLLNSEMVIMCGANFKYDLNWIKYKWNIECTNFKLD 243

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            TLV +  N      +    +L       +   +L       +    +YD+ + +     
Sbjct: 244 TTLVGSLLN------ENRSNSLN---THAKLFTDLGGY---DDDLNNIYDKGRMDLIP-D 290

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKE--QELWYLD---------QTINDRGYCVDVAL 203
                Y  GD   T  +         ++     +Y++         + +   G  V+   
Sbjct: 291 ENLLPYAGGDTDATLRVRNHFARELQQDPWLTNFYVNLLHPASRAFEKMEQNGVKVNGEK 350

Query: 204 AHTLNQIVDVERTKLDQELESL-------TYGLVSSSRCLEKLKTWLFLETGLHLE---- 252
             TL + ++ E+ +  +E+  +                     K +LF   GL L+    
Sbjct: 351 LKTLGEELEQEKNQYLREMVDMMPATACPEVPEAKPVIKAAIGKDYLFGARGLGLKPIMV 410

Query: 253 ---DLTETTCQRVLS--SNKKLTPQA---IQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
              +    T +  L+   + K  P+A   IQ+ N   +A ++        +     DG  
Sbjct: 411 NEKNKEPLTNKSHLNNFDDPKKYPEAHKFIQLGNKWNQADKAQGTYCTGFLRHQREDGYF 470

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI----- 359
             +      +                    + +  D   T        DP    +     
Sbjct: 471 HPSYMLFKGAF------------------DNDKGTDDSGTVTGRLAAKDPAIQTLPKKTS 512

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           ++  +R+C    EG  +V  D +  E R L  MA E    KA+  G DL+V +   +  +
Sbjct: 513 LAKRLRACYEPPEGYSIVEIDFSQGELRRLCGMANEPAMKKAYREGLDLHVISGGATAGL 572

Query: 420 APAQVT----------KDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKT 468
           +  Q+           K  R  GK     L Y      FQ+ A    G+ L+        
Sbjct: 573 SYEQMQELEKTDAALYKKYRNYGKPQNFGLLYGMSWGGFQQYAKDQYGVLLSDKEAQNMR 632

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN-ELHQA 527
            +  + +    ++     E   E A  + +I +   RV+         ++   N    QA
Sbjct: 633 FNFFDTYARLPDWH----EETKEFARVNGYIRSPLGRVRHL-----PLINSFDNFYKSQA 683

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKN 556
             Q + +G            +   +    
Sbjct: 684 ERQAVNSGVQSTLSDLLIYGMARFRAQYG 712


>gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 330

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 93/284 (32%), Gaps = 43/284 (15%)

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++LK  L  E G+ +  +     +  L           ++   + + ++     
Sbjct: 4   DNLNSSKQLKQSL-QEMGIPVTSVQ----EGKLKLFSSKYSIVDEIVRYK-KYNKLVTTY 57

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + L   ++ DGRLRG    +G                               T      
Sbjct: 58  GDKLKNQLSKDGRLRGHWNLIG-------------------------------TKTSRMS 86

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P+  Q I   ++    A E    ++ D + IE R+LA +   Q  + AF  G DL+V
Sbjct: 87  CQKPNF-QSIPKEMKKYFQAEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHV 145

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTFAHLVKTN 469
            T     N     ++  +R +GKV+   L Y       ++  +   G N++ +       
Sbjct: 146 ETAKAILNQ--ESISDSERKLGKVVNFGLIYGLTPFGLKEKINAIPGFNISEYKAEEFIA 203

Query: 470 SAPEEWEDAENF--CRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           +  + + +   +   +   +                +R+K   R
Sbjct: 204 NYFKMYPEVAKYQQQQQYSDIITTLGGSYWDNTNGLDRLKPRQR 247



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 602 VQAVSRDILAEGMM---NATKAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLM 651
           VQA   + L E +       +  + +V  +HDEI+ E P+T+   A   L   M
Sbjct: 252 VQASCAEGLKESLALFCKLKQDKWKLVSAIHDEIIIEVPETEALTAKECLKQAM 305


>gi|158285510|ref|XP_564726.3| AGAP007533-PA [Anopheles gambiae str. PEST]
 gi|157020027|gb|EAL41770.3| AGAP007533-PA [Anopheles gambiae str. PEST]
          Length = 1997

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/486 (15%), Positives = 136/486 (27%), Gaps = 101/486 (20%)

Query: 179  SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
            +S+E  +     +    G+ VD      L   +   R ++ +E   L             
Sbjct: 1563 TSREMPVQLALASAEVIGFPVDRERLAALIAQLKACRDRIAEEARKLNGNQRLDFGSSRA 1622

Query: 239  LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            +   L L  G   +     T ++VL   +  +P A  V   R   S              
Sbjct: 1623 VAKALRLAGG--NDRKQCRTVRQVLERLE--SPLAALVIAYRKIESNLTRTIEPLYRIVR 1678

Query: 299  NSDGRLRG-TLQFLGASRTGRWSGCVFPPQNL----PRPSRSHEELDQIITHLPTSITSD 353
                R+ G +  F   + TGR +      Q +      P+R  E         P   +  
Sbjct: 1679 PGSNRVHGRSFCF---TSTGRITMHEPNLQTVVKDFTVPARLTEGGGGGGDAPPPLFSC- 1734

Query: 354  PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE------- 406
                        +C     G  L+ AD   +E  +L  ++ +   + A   G        
Sbjct: 1735 --------RSTFACSDPDGGTVLLSADFCQLELSILTHLSQDPQLMAALGGGGNEAPGRT 1786

Query: 407  ----DLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
                D++    AR  +      V+ + R   K +   + Y  G +A   MA+   L+ + 
Sbjct: 1787 EARSDVFRALAARWNHYERESDVSDELRNRTKAIVYGVIYGMGVRA---MAAELQLDEDA 1843

Query: 462  FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               L++   A   + +   +   +     +      +I T   R ++      S  +   
Sbjct: 1844 ARTLMEQFHA--TYPEIRRYIERVVRLTRQLG----YIETLTGR-RRHLPAITSENARER 1896

Query: 522  NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
            +E  +    T   G A    K                                      N
Sbjct: 1897 SEAERQAVCTTIQGSAADILK--------------------------------------N 1918

Query: 582  TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
               R       Y                    ++   +     VL +HDE++ E P +  
Sbjct: 1919 AIVRMRRNLRKYR------------------NVLELER--IRFVLHMHDELIYEVPRSQL 1958

Query: 642  FNASML 647
               + +
Sbjct: 1959 HKIAKI 1964


>gi|290998603|ref|XP_002681870.1| predicted protein [Naegleria gruberi]
 gi|284095495|gb|EFC49126.1| predicted protein [Naegleria gruberi]
          Length = 1648

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 68/422 (16%), Positives = 134/422 (31%), Gaps = 43/422 (10%)

Query: 171  IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL- 229
            I   L  +   E     +  T+   G   +        +++D +  ++ ++L SL     
Sbjct: 1168 INLELRQMFEFEMSFSKVLSTMEHNGIRFNYHWIKHNTKLIDAKLDEITRDLNSLQILDG 1227

Query: 230  ----VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
                VS++  +  L        G         T + +L   KKL P    +         
Sbjct: 1228 KKIDVSNNDHVALLLFDKLKLKGTE-----RKTNKEILEKLKKLYPDKSYIMKQISEYRY 1282

Query: 286  SAVLKLNTLVE-----AMNSDGRLRGTL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
               +K + +           D +       Q    S TGR S      QN+P      + 
Sbjct: 1283 LLNIKTHHIQNMPNDIKYCPDTQEYRIFASQMQTTSATGRLSVKNPNLQNIPNDIDIKDP 1342

Query: 339  LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
              Q                 II+  +RS  I   G  +V  D   IE R+LA ++ ++  
Sbjct: 1343 FSQK---------------SIITLSIRSAFIPRNGYVMVSIDYKNIELRILAHLSQDRTL 1387

Query: 399  LKAFETGE-DLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMA---- 452
                   E D++       +N  P + V    R++ K +   + Y  G++          
Sbjct: 1388 SDILSNTERDIFEEIARNFWNFRPEEPVPLSHRSLVKQIIYGISYCMGSETLSGKMFNSE 1447

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            +   +       +       + + +     +  ++    H +E  ++ T+  R K+    
Sbjct: 1448 NEDFMLRPGEDRIEAAERYKQNFFEKYQGLKQYKDFVENHLVEKHYVETSYSR-KRFIHD 1506

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV----YMKKDKNNLILMLPSGRSL 568
              S  S       +A   T+  G A    K   + +     +  K +    ++L     L
Sbjct: 1507 ICSDDSSKRAAARRAALNTVSQGSASDIMKIVMLGIYSFMRHFNKKEERAYMLLQIHDEL 1566

Query: 569  VY 570
            ++
Sbjct: 1567 LF 1568


>gi|194100568|ref|YP_002003893.1| gp54 [Mycobacterium phage Nigel]
 gi|192758284|gb|ACF05057.1| gp54 [Mycobacterium phage Nigel]
          Length = 618

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 115/677 (16%), Positives = 202/677 (29%), Gaps = 154/677 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDD---HPVELW--DCVHDPVMPQVLKEALENTDVTIV 69
           D+   G+        +      ++      V     D   +     ++++ +E+    + 
Sbjct: 60  DIETPGLD---NAFTINCVTMAWEMPTTGHVRTVILDPSRNRADHAIVRDMVEHAG-RLA 115

Query: 70  AHNSYFERT-VLKACFNLDIPIHRWICTLVLARS----NGLPSALKAVGEALKLSSQKME 124
            HN+ F+   +L         I++ + TL+++R       +P  L A+     L     +
Sbjct: 116 FHNAPFDTPPLLHNQLFDRPDINKIVDTLLISRFAVPDVMVPKNLTALS-VRHLGLDDDK 174

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
            G E   +    +T    ++           ++      D   T     RLEPL   +  
Sbjct: 175 GGLERAFKAAGYKTQAAGFEGMDITSP----VYRYGAMADTVATL----RLEPLMRAKAL 226

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK------ 238
            W  D      G   +      L     V R  L +    L        R  E+      
Sbjct: 227 HWATDHPFQTYGATTEAEAEQLLWTQETVHRVMLRRSAVGLAVDRAYLDRYAEQVDVDRN 286

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L        GL             L    +L     +    ++RA++  +  L+  + A 
Sbjct: 287 LAVAELAAHGLEGGSGKAAKLVEYLYQRGELPEPWPRTPTKKLRATKDDLEGLDHPLAAA 346

Query: 299 NSDGRLRGTLQFLG-ASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT-HLPTSITSDPDP 356
               +L    + +G  ++  R +             R H ++  +            P+ 
Sbjct: 347 QR--KLATIEKVMGYLAKVDRQAS---------VTGRCHPQVGVLGASATGRMAYGSPEL 395

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
            Q  +D     +I  +G+ L   D + IE   +A MA +   L  FE GEDLY       
Sbjct: 396 QQFPADAR--AIITDDGQGLTSIDWSQIEPVTMALMAKDHDFLAPFEAGEDLYE------ 447

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                 +     R + KV+ L                  GL +   A  +         E
Sbjct: 448 ---PIQRSAGIDRPVAKVVLLGTM--------------YGLGIAKLARQIGHTE-----E 485

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            A    R M E               CER    W +K   V+E               G+
Sbjct: 486 SAAQIRRQMFEAMK-----------GCER----WMRKVQNVAE-------------TYGR 517

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            + A  R                 +LP      Y                         K
Sbjct: 518 VVTAGGR-----------------ILPVDPGYEY-------------------------K 535

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLT--VHDEIVCETPDTDEFNASMLYHLMTSN 654
                +Q  + D+LA  ++   + G    L   +HDE+V +T       A  +  +M + 
Sbjct: 536 AVNYAIQGSAYDVLANSIVEMDRRGISDHLQLAMHDELVVDTE-----VAEEVQQIMLTP 590

Query: 655 PS----WAKGLP-LKAE 666
           P     WA+ +P L+ +
Sbjct: 591 PEFLITWAERVPVLRTD 607


>gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01]
          Length = 680

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 80/503 (15%), Positives = 153/503 (30%), Gaps = 93/503 (18%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARS 102
           + D          L + L +   T +AH++  E   L     L  P   W  C    AR 
Sbjct: 110 VIDLTKFKEP--KLLQPLLDLPTTYIAHHAKAELHCLWQ-LGLTEPRTIWDTCIAERARY 166

Query: 103 NGL-----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK----PNHREA 153
            GL          +    +   ++  E  +   A       ++  +  N       H   
Sbjct: 167 LGLHVFDNDRVFDSENAEICARAEHAENNRIRYALNTVASRYDIHHRFNLVKSDLQHSFI 226

Query: 154 WRLFGE-------YCKGDVTVTREIF----KRL------EPLSSKEQELWYLDQTINDRG 196
               GE       Y   D  V  +++    ++L        L + E      +  +   G
Sbjct: 227 DYDSGEFTREQIHYAAEDAIVAAKLYLPQMQQLTLQGCYHHLITVEMPWVTTNAAMEWHG 286

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--HLEDL 254
             VD       N +++    KL+     L    + +    ++ K   F +  L  H    
Sbjct: 287 VSVDR---EKCNAVLNASTPKLETLRSQLAQMGLDNPNSHQQ-KETFFRQLNLLDHFNKG 342

Query: 255 TETTCQ-RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + + + ++L     + P    +                + V+A+  D  LR T+     
Sbjct: 343 GKYSFKLQLLKDLAHIHPAIGLLAEF-------------SKVQAIERDILLRPTI----- 384

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
                          +   SR H E  Q+         + P+ L +    +R  +I  +G
Sbjct: 385 ---------------IGSDSRVHPEHKQLEVVTGRQSCASPNLLGLPG-AMRPLIIPKKG 428

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT-------- 425
             +  AD + IE  + A +  ++  +  F  G D+Y       + +   +          
Sbjct: 429 NGIGEADYSQIEVAITAAVYSDKNLIAKFNAG-DIYTVMAQEFYAIDLDEEDRQCDSDTF 487

Query: 426 ----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
               KD+R I K   L + Y         + S   ++      L+        +      
Sbjct: 488 KHKHKDKRDIMKTCVLGILYGLSPF---GLGSRLEISELEAKQLMN------RFLAMFPT 538

Query: 482 CRWMQENHPEHAIEDLFIGTACE 504
            + M E  P+ A    ++ T+  
Sbjct: 539 LKHMMETAPQQAAYRGYVSTSTG 561


>gi|48696692|ref|YP_024986.1| DNA polymerase I [Vibrio phage VP5]
 gi|40806155|gb|AAR92073.1| DNA polymerase I [Vibrio phage VP5]
          Length = 633

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 108/671 (16%), Positives = 207/671 (30%), Gaps = 157/671 (23%)

Query: 14  IDLTKCGICKYAEDVCVIL----------FAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           IDLTK     Y  D               F+    D     +D    P   Q L E  ++
Sbjct: 15  IDLTKYEAWAY--DTECTGLKYKVDKVFGFSVATPDGQSGYFDIREQPDAVQWLVEQADS 72

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA------------RSNGLPS--AL 109
              TIV HN+ F+   +     + +P+ +   T + A             + G     +L
Sbjct: 73  YKGTIVCHNASFDYR-MSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYSL 131

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +    + +  E   EL A F    T +     N         L  +Y   D  +T 
Sbjct: 132 DYLAKKYVGAQKYAEIYDELAAMFGGKATRKTQM-PNLYRAPSG--LVRKYACPDAELTL 188

Query: 170 EIF---------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           E++         + LE + + E+++         RG  VD+  A      +D    +   
Sbjct: 189 ELWLEQQELIAKRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQA 248

Query: 221 ELESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           ++  L  G   +    ++++       E G+       T  +R  + N  L   A++   
Sbjct: 249 KMFQLA-GREFNPNSPKQVREVFGAKEERGV-WTSRDGTVLERTATGNPCLDADALRAMK 306

Query: 279 NRMRAS--------RSAVLKLNTLVEAMNSDGRLRGTLQFL----GASRTGRWSGCVFPP 326
           + + A+        ++    L   V   +  GR+   +  +    G + TGR S      
Sbjct: 307 DPLAAAVLELRSNIKTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPAL 366

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q +P  ++                         I+  ++   +  EG+  + +D+A  E 
Sbjct: 367 QQIPSRNK------------------------RIAAIIKPAFLPEEGQLWLDSDMASFEV 402

Query: 387 RVLAWMAG--EQWKLKAFETG--EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
           R+ A +         +A+      DL+         +        Q A  K M L + + 
Sbjct: 403 RIFAHLVAAYNPAIARAYAENPELDLHQWVG-DLMGIPRNASYSGQ-ANAKQMNLGMIFN 460

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
            G  A               A  +       E+ D +      ++  PE           
Sbjct: 461 RGDGAV--------------ADSLGMPWEWCEFTDKKGDLIRYKKAGPEA---------- 496

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                +  A+   I+  K +  R ++      + +++    +  
Sbjct: 497 -------------------KAVIAAYHTQIQGVKTLATRAQK------IAEERGW--IQT 529

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG- 621
             GR L + +    +SY                K +  ++QA + D   E  +    A  
Sbjct: 530 AHGRRLRFPN--GYKSY----------------KASGILIQATAADENKENWLRIEDALG 571

Query: 622 --YDIVLTVHD 630
               ++L  HD
Sbjct: 572 SDGSMILNTHD 582


>gi|302845441|ref|XP_002954259.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
 gi|300260464|gb|EFJ44683.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
          Length = 689

 Score =  113 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 110/360 (30%), Gaps = 46/360 (12%)

Query: 170 EIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +   L P + + E ++ +L   +   G  VD A        V      L     SL  G
Sbjct: 268 RVQPWLRPQAVQVEMQVCWLLAQMEAVGMAVDTAGLGRQAAAVRQRMEALTSAASSLLGG 327

Query: 229 LVSSSRCLEKLKTWLFLETGLH--LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
              +     +L   L+ E  L   +            ++   +T +A QV   RM  + +
Sbjct: 328 RTINLGSSAQLAVVLYDELELPPPVPQGQRDAAGVSRTAVPGVTERAKQVVGTRMDGTAA 387

Query: 287 AVLKLNTLVEAMNSD--------GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                +                  RLR   Q    + T      V P         + E 
Sbjct: 388 GAELDDGGGGGGGGGRRGPGGRWNRLRRGFQ---WAVTK--YEVVVPL------GDTTEG 436

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                     +     D L +++   R+  +A  G+ LV AD + IE R+LA M+G+   
Sbjct: 437 SPCGGGGEEGAGVLRGDRLVVVA---RNAFVAPPGRLLVAADYSQIELRLLAHMSGDLRL 493

Query: 399 LKAFETGE-------------DLYVTTYARSF--NVAPAQVTKDQRAIGKVMELALGYQG 443
            +  + G              D +    A       APA V+   R   K +   + Y  
Sbjct: 494 QELLKRGVEQSEGRGGGGGGTDAFRHIAASWLRPGTAPADVSSRDREQVKRVVYGIIYGM 553

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A+   +  +  G+ L     L         +       +    +   HA    +I T  
Sbjct: 554 TAQGLAQQLAEYGVGLEEATAL------RTSFLRHFAGVQAFITSSLYHARRHGYITTGL 607


>gi|48696650|ref|YP_024429.1| DNA polymerase I [Vibrio phage VP2]
 gi|40950048|gb|AAR97639.1| DNA polymerase I [Vibrio phage VP2]
          Length = 633

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 108/671 (16%), Positives = 207/671 (30%), Gaps = 157/671 (23%)

Query: 14  IDLTKCGICKYAEDVCVIL----------FAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           IDLTK     Y  D               F+    D     +D    P   Q L E  ++
Sbjct: 15  IDLTKYEAWAY--DTECTGLKYKVDKVFGFSVATPDGQSGYFDIREQPDAVQWLVEQADS 72

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA------------RSNGLPS--AL 109
              TIV HN+ F+   +     + +P+ +   T + A             + G     +L
Sbjct: 73  YKGTIVCHNASFDYR-MSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYSL 131

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +    + +  E   EL A F    T +     N         L  +Y   D  +T 
Sbjct: 132 DYLAKKYVGAQKYAEIYDELAAMFGGKATRKTQM-PNLYRAPSG--LVRKYACPDAELTL 188

Query: 170 EIF---------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           E++         + LE + + E+++         RG  VD+  A      +D    +   
Sbjct: 189 ELWLEQQELIAKRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQA 248

Query: 221 ELESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           ++  L  G   +    ++++       E G+       T  +R  + N  L   A++   
Sbjct: 249 KMFQLA-GREFNPNSPKQVREVFGAKEERGV-WTSRDGTILERTATGNPCLDADALRAMK 306

Query: 279 NRMRAS--------RSAVLKLNTLVEAMNSDGRLRGTLQFL----GASRTGRWSGCVFPP 326
           + + A+        ++    L   V   +  GR+   +  +    G + TGR S      
Sbjct: 307 DPLAAAVLELRSNIKTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPAL 366

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q +P  ++                         I+  ++   +  EG+  + +D+A  E 
Sbjct: 367 QQIPSRNK------------------------RIAAIIKPAFLPEEGQLWLDSDMASFEV 402

Query: 387 RVLAWMAG--EQWKLKAFETG--EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
           R+ A +         +A+      DL+         +        Q A  K M L + + 
Sbjct: 403 RIFAHLVAAYNPAIARAYAENPELDLHQWVG-DLMGIPRNASYSGQ-ANAKQMNLGMIFN 460

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
            G  A               A  +       E+ D +      ++  PE           
Sbjct: 461 RGDGAV--------------ADSLGMPWEWCEFTDKKGDLIRYKKAGPEA---------- 496

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                +  A+   I+  K +  R ++      + +++    +  
Sbjct: 497 -------------------KAVIAAYHTQIQGVKTLATRAQK------IAEERGW--IQT 529

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG- 621
             GR L + +    +SY                K +  ++QA + D   E  +    A  
Sbjct: 530 AHGRRLRFPN--GYKSY----------------KASGILIQATAADENKENWLRIEDALG 571

Query: 622 --YDIVLTVHD 630
               ++L  HD
Sbjct: 572 SDGSMILNTHD 582


>gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 1564

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 126/412 (30%), Gaps = 71/412 (17%)

Query: 67   TIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL------PSALKAVGEALKL 118
             + AH++  +   L     +D+     R   T++ A+          P   K  G  L  
Sbjct: 1051 MLHAHSATADLIPLAHAGLIDLDDAWSRMHDTVIPAKLADPASTGSDPGLKKLAGAVLGD 1110

Query: 119  SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-------GEYCKGDVTVTREI 171
            ++      +   A F K            P  R  W            Y   DV     +
Sbjct: 1111 AAVSTAAEEGRKALF-KAGKWLTEVKSTTPISRSGWAQVNPACETMIRYAASDVIDDAAL 1169

Query: 172  FKRLEPLSSKEQELWYLDQTI----NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
              RL PL  +  E   L Q +     DRG  +D  L   L+     +   L    E +  
Sbjct: 1170 ALRLPPLPPELLERERLAQRMTARVADRGLRLDADLVERLHA---EQTAALTAASEHIRA 1226

Query: 228  GLVSSSRCLEKLKTWLFLETGLHLEDLTETT----CQRVLSSNKKLTPQAIQVFNNRMRA 283
              V +    +++   L    G  L   T+T      + VL   K +  +   +   R+  
Sbjct: 1227 FGVDNPGSDQQVAAAL-ERLGAPLP-RTKTGRPSVAKGVLDPLKNVDGEIGDLVRARLDY 1284

Query: 284  SRSAVLKLNTLVE-----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +A  +L   +E       N DGR R T+  L A                         
Sbjct: 1285 Q-TAENRLGLFLEPYRQLVTNGDGRARPTIYTLAA------------------------- 1318

Query: 339  LDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                           P+  Q+  +   R+C+ A  G  L+ AD +G+E RV A ++ +Q 
Sbjct: 1319 ------DTGRMSCVRPNLQQVPREGGFRACITADPGHVLISADFSGVELRVAAALSQDQN 1372

Query: 398  KLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
             +        D++       +        K +R   K       Y  G    
Sbjct: 1373 LMAIVADPDRDIHREIAQLVWGP---DAGKPERYQAKRKVFGRLYGSGLNGL 1421



 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 33/152 (21%)

Query: 511  RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            R  H  +++L         +  +  + +  R       +Y       +    P    +  
Sbjct: 1382 RDIHREIAQLVWGPDAGKPERYQAKRKVFGR-------LYGSGLNGLITSDPPVSEPIA- 1433

Query: 571  RDVGNNRSYLNTTTRQLTRE------------YTYGGKLT-----------ENIVQAVSR 607
            + +      +       +R               Y G+                +Q  +R
Sbjct: 1434 KAIIEAMDLMTPGLSSWSRMVADGVDAGRTEFQAYSGRTIYMPTDRGYAGPNYCIQGTAR 1493

Query: 608  DILAEGMMN--ATKAGYDIVLTVHDEIVCETP 637
            ++L + ++    T+ G  ++L VHDE+V   P
Sbjct: 1494 ELLIDALVRWSGTRWGNAVLLPVHDELVVHVP 1525


>gi|66821457|ref|XP_644204.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
 gi|60472150|gb|EAL70103.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
          Length = 519

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 84/515 (16%), Positives = 163/515 (31%), Gaps = 107/515 (20%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLD----QELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   G C D +     ++ +     +++     E   L      +    +++  W     
Sbjct: 1   MEIEGVCCDTSKLDNCSEKILKRIKEINCSVYNEDSKLIREPKINLNSPQQVLDWFGKNL 60

Query: 248 -GLHLEDLTETT-----CQRVLSSNKKLTPQAIQVFNNRMRASR-SAVLKLNTLVEAMNS 300
               +    + T      + +  +NKK+      V N R      S+ +K+       N+
Sbjct: 61  ENYKITSSNKETLAIERVKFLNCNNKKVVDFIDSVSNVRKLTKLNSSYIKIILKSNRTNN 120

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-------- 352
                  L     + TGR S      Q+LPR S    +L+ I      +  +        
Sbjct: 121 LKFQFSCLWNQTGTTTGRLSSTKPNFQSLPRNSTKLTKLNNIDFDDDDNFNNINNNNNNN 180

Query: 353 ----------------------------DPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
                                       +          +R+  I+ EG  LV  D   I
Sbjct: 181 NGEKNLYTLLNNDNDGDDDEDDDNIDELNSYNNNNNIINIRNSFISREGYSLVALDYNQI 240

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPAQVTKDQRAIGKVMELALGYQG 443
           E R++A  + ++  ++ FE+G+D+     +R    V P  V K+ R   K +   + Y  
Sbjct: 241 ELRIMAHYSKDKHLIEYFESGKDVINMMASRLIDGVDPNNVKKEIRDKVKRIVYGILYGI 300

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
              +  K+    G++L+     +  N+   ++E+  +F +   +      I++  I T  
Sbjct: 301 QKNSLHKL---LGVSLDEAQEHI--NNFNLKFEEVSSFIKINSQ------IKNGKILTIG 349

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
            R+++   Q HS +    +         I+   +I+     D+  + M    N L+L L 
Sbjct: 350 NRIRRF--QDHSSIIPSTSSSSSLSSSPIQAINSIMQGSSADIIKMAMINIMNELLLPLS 407

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
             R  +  +   +                   +                           
Sbjct: 408 KLREFIGVNSKGDVVGT--------------PRFV------------------------- 428

Query: 624 IVLTVHDEIVCETPD----TDEFNASMLYH-LMTS 653
             L VHDE+V E PD     +     +L    M  
Sbjct: 429 --LQVHDELVFEIPDQLLSDESIRLDLLIKYQMER 461


>gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus]
          Length = 1473

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 112/378 (29%), Gaps = 122/378 (32%)

Query: 325  PPQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVV 378
            P Q L    SR H  L+ + T         P+     +       +R+   A EG  LVV
Sbjct: 1160 PLQELVDEKSRVHCSLN-LNTETGRLSARKPNLQNQPALEKDQYKIRAAFRAEEGNTLVV 1218

Query: 379  ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ---------- 428
            AD   +E R+LA +   +  + AF+ G   +  T    F+     V K +          
Sbjct: 1219 ADYGQLELRLLAHITDCKSMITAFKEGGCFHSRTAVGMFDHVKEAVDKGEVLLEWDYSKG 1278

Query: 429  --------------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
                          R   K +  ++ Y    K    +    G+ L     LVK       
Sbjct: 1279 EPPKPLVKDVFASERRQAKTLNFSIAYG---KTGHGLFKDWGVTLKEAEDLVKA------ 1329

Query: 475  WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                               W      V     ++ Q  + T   
Sbjct: 1330 -----------------------------------WYADRPEVKRWQKQVIQNAKDT-GF 1353

Query: 535  GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTY 593
             + ++ R R+                 LP   S     VG   R+ +NT           
Sbjct: 1354 SRTLMGRYRK-----------------LPDITSNDRGKVGHGTRAAINTP---------- 1386

Query: 594  GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SM 646
                    +Q  + D+    M+   ++      G+ ++L VHDE++ E P+     A + 
Sbjct: 1387 --------IQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQVHDEVILEGPEESAKEALAE 1438

Query: 647  LYHLMTSNPSWAKGLPLK 664
                M     W  G+ L+
Sbjct: 1439 TVRCMQQP--W-DGIGLR 1453



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 107/346 (30%), Gaps = 52/346 (15%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA---FGFDDHPVEL--WD-CVHDPVMPQVLKE 59
            D E  S I+L   G   +    C+ ++      F + P ++   D         +    
Sbjct: 651 CDTEV-SEINLKDHGPVGHGRVTCISIYGGPDLDFGEGPGKILWVDNLGAAAGTLEEFLP 709

Query: 60  ALENTDVTIVAHNSYFERTVLKA--------------CFNLDIPIHRWICTLVLARSNGL 105
              +     V HN  F+R V+                     + + R   T +   +   
Sbjct: 710 FFASEKHKKVWHNYGFDRHVMFNSPDNREEQRIDCVGFAGDTMHMARLWDTSMEKYAGDT 769

Query: 106 PSALKAVGEALKLSSQKMEEGKEL--IARFCK-GETHECL---YDRNKPNHREAWRLFGE 159
             +L+A+   L    Q+    KEL  I +  K G     L            E    F E
Sbjct: 770 GFSLEALSLKLLGEGQRKTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRPRFIE 829

Query: 160 YCKGDVTVT----REIFKRLEPLSSKE-------QELWY-----LDQTINDRGYCVD-VA 202
           Y   D   T    RE+ ++L  +S K+        E++Y     L   +   G  V+   
Sbjct: 830 YSAYDAQATWLVHRELMQKLREMSWKDGMTMLDFYEMYYVPFGELLTDMERTGIYVEAKD 889

Query: 203 LAHTLNQIVDVERTKLDQE----LESLTYGLVS-SSRCLEKLKTWLFLETGLHLEDLTET 257
               +      ++ K ++     ++ +  G  + +     +++T LF   G      T+ 
Sbjct: 890 YLQDIEVQARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLF---GGATNPKTKE 946

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
                     +  P  ++ F         A      L E +   G+
Sbjct: 947 KLPVRRVFKIERDPAELEAFKATQVQDEFADYTAAMLKEKLKEMGK 992


>gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1]
 gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1]
          Length = 1046

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 76/511 (14%), Positives = 148/511 (28%), Gaps = 115/511 (22%)

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175
            K +  K  +       T       N         +   Y  GD   T  +  +L     
Sbjct: 438 YKDKVVKATMD-LANISTSNVFSGGNFSYEWIPMEIMYYYAAGDADATLRVHNKLLQLIR 496

Query: 176 -EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-- 222
            +PL+   +          +L +    I + G  VD A    +  +   +  +L+ ++  
Sbjct: 497 EDPLNKDGRIEDLYLNFYPKLVHALACIQNHGMQVDDAYLTKITGLYADKAEELNNDIRK 556

Query: 223 -------ESLTYGLVS--------SSRCLEK-----------------------LKTWLF 244
                  E    GL +          +  +K                       + T L+
Sbjct: 557 LPAVKDFEEYQLGLYNEGVKEFAKPPKERDKTIFGYRAKFKDDKYKFSASRANDIATILY 616

Query: 245 LETGLHLE---DLTETTC--------------------------QRVLSSNKKLTPQAIQ 275
              G  L    D  + T                            +   +  K T    +
Sbjct: 617 KNLGYALPYGKDFIKDTVWKKNKPEEQIIWSDYKTNKVALDYVNSQAKEAGDKDTEDLTK 676

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +       ++ +    ++L E  +   +L G    +G + T R S      QNLP    +
Sbjct: 677 MLAKFSIVNKISSSFTDSLREYTDDTMKLHGHFSAVG-TETSRLSSSQINLQNLPAEKSN 735

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
               +         ++  P+                   KL+  D + +E  +LA +  E
Sbjct: 736 THLFNYKYPIKRMFVSRFPNG------------------KLINLDYSSLEFHILALVTKE 777

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                AF  G+D++ +  A  ++V    V  +QR   K +   L Y  G  A    A   
Sbjct: 778 DSMTGAFLEGKDIHTSNAALMYDVPYEDVIVEQRKAAKSIGFGLIYGKGDAAL---AEDL 834

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL+L      + T      +  ++   +   +   + A  + ++ T     ++      S
Sbjct: 835 GLSLEEAQEKINT------FFKSKPRVKAFIDKAHKFAENNGYVTT-LNGFRRNLGGAFS 887

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                 ++  +    TI  G   I      +
Sbjct: 888 TDYGKRSKAQRQSVNTIIQGSGAILTNTAVI 918


>gi|291532674|emb|CBL05787.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Megamonas hypermegale ART12/1]
          Length = 215

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 80/265 (30%), Gaps = 85/265 (32%)

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A M+ ++  + AF   +D++  T A+ F V   +VT + R   K +   + Y   A   
Sbjct: 1   MAHMSEDKHFIDAFCHNQDIHTATAAQVFKVPIDEVTSELRGKAKAVNFGIIYGISAF-- 58

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +A    ++       +        +    +  +       E A +D F+ T       
Sbjct: 59  -GLAKNLHISPKEAGEYIDN------YLQECSGVKNFMHEIVEKAHQDGFVTTLF----- 106

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                                            +RR +P +                R+L
Sbjct: 107 --------------------------------GRRRYLPAIKSSNFNQ---------RAL 125

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622
                   R  +NT                   +Q  + DI+   M  A++A        
Sbjct: 126 A------ERMAMNTP------------------IQGTAADIIKIAMNRASEAIKEAKLKS 161

Query: 623 DIVLTVHDEIVCETPDTDEFNASML 647
            I+L VHDE+V E    +    S +
Sbjct: 162 RILLQVHDELVLEVVKEEIEKVSEI 186


>gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus]
          Length = 482

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF--NVAPA 422
           R  ++AS G   V AD + +E R++A ++G+   LK F  G D++ T  A          
Sbjct: 216 RDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKKAE 275

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            +T+++R   K++   + Y   A A         L+      + +T    + +     F 
Sbjct: 276 DITEEERRQTKIVVYGVLYGQSADALVP---QLRLSRPEAFKIRQT--VLKTFPKLTEFL 330

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
           + ++E+  E    +  +G      ++   Q +S      +   +    T   G A    K
Sbjct: 331 KKVKEDCKECGYVETLLGR-----RRYLPQINSTDKAERSRAERQAANTTTQGSAADLLK 385

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                +    + +    +  P+G+ +         +    T+       T    +     
Sbjct: 386 LAATNVA--ARLERCEWMSRPAGKPICTPPPN---AAAGGTSSSALASGTADATVPCRFP 440

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
           +   R  LA       +    +VL++HDE++ E
Sbjct: 441 RDGGRSQLA------RRPACRLVLSIHDELLYE 467


>gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSC 367
           ++  A++     G     +   +        +Q+         SDP+  Q+      R C
Sbjct: 83  EYRAAAKRLSTYGR-VWVEKHVQDGAVLPSWNQLGAESGRMSCSDPNLQQVPRGSAHRRC 141

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
             A     LV AD +  E R+ A +A E+  + A+  G DL+  T AR  N     VTKD
Sbjct: 142 FTARPEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLHALTAARVLNKDEDAVTKD 201

Query: 428 QRAIGK 433
            R + K
Sbjct: 202 DRQLAK 207


>gi|60117346|gb|AAX14438.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 193

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 35/211 (16%)

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL- 249
            +   G  +++     L+         L+ E+ +L  G   +    ++L   LF + GL 
Sbjct: 6   DMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGLN 64

Query: 250 -HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              +     +        + L  + +++ +                             L
Sbjct: 65  KKKKSKKSGSYSTNYEVLEALEEEGVEIASK---------------------------IL 97

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
            +   S+           Q  P   R H       T      +S+P+   I       + 
Sbjct: 98  NWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQNIPIRSEEGNL 157

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +R   IA +G K++ AD + IE R+LA +A 
Sbjct: 158 IRQAFIAPKGHKIISADYSQIELRLLAHVAN 188


>gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1]
 gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1576

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/659 (11%), Positives = 171/659 (25%), Gaps = 174/659 (26%)

Query: 120  SQKMEEGKELIARFCK-----GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            ++K+    +++  F          +  +           +     Y  GD   T E FK 
Sbjct: 832  NEKVGYKSQMVHLFKDLFDLVSTKNNIVKIDEFDYSYINFDEQSFYAAGDTYATYEAFKL 891

Query: 175  -----LEPLSSKEQELWYL-DQTIND----------RGYCVDVALAHTLNQIVDVERTKL 218
                 L+  S    + + +    +ND          +G  ++      +         +L
Sbjct: 892  DYMNFLKRDSKSILKEYPIPLVLLNDILLPISVIQSQGIKIEPDDYEFMKINFKRSLEEL 951

Query: 219  DQELE------------SLTYGLVSSSRCLEKLKTWLFLETGLH--------------LE 252
             + +                Y    + +  E L    +    +                E
Sbjct: 952  LKNIYNHPDLKPYIEEFEAKYKEKFNIQSAEHLTHMFYDYLQVPDKYKTFTDKGNIQMNE 1011

Query: 253  DLTETTCQRVLSSNKKLTPQAIQV---FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL- 308
               +      +        + +++      +    R+     +  +++ N +  +     
Sbjct: 1012 SAIKKIKGIDIEDESIQDKKKVEIAKYLAEKTLEYRTFSKLYSAYIQSYNKNDLIDTNYI 1071

Query: 309  ----QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
                 F   + TGR S      QN+P+      +L +        ++   +  +   D  
Sbjct: 1072 VHPNYFTTGTVTGRMSSSEPNFQNIPKG-----DLPKEFQVKNIFVSRYLNSNKYFEDND 1126

Query: 365  RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV----- 419
                I      L+ AD + +E RVLA ++ ++    AF +GED+++ T      +     
Sbjct: 1127 YKKPITG---ILLQADYSQMELRVLAMVSQDENLKNAFISGEDIHLATAKSITGMDYLSK 1183

Query: 420  ---APAQVTKD----------------------------------QRAIGKVMELALGYQ 442
                  ++T +                                   R   K +   + Y 
Sbjct: 1184 DVDENTEITPEVKNLITKYKQYWGKEAENLTDKEILSKIAHDTEVIRKKAKTVNFGIVYG 1243

Query: 443  GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
              A     +A    ++L      +      E++ +A    +         A E  ++ T 
Sbjct: 1244 MTA---AGLAERINVSLKEAEKFI------EQYLNALPGVQNYIITKQTKAKEKGYVET- 1293

Query: 503  CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                             +WN         +            D+  +             
Sbjct: 1294 -----------------IWNRKRNLLNAKVY---------LHDIEQIIKHYKDKLYSKNT 1327

Query: 563  PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD-------ILAEGMM 615
            P    L Y ++      +     +  R+           +Q  + D        L    +
Sbjct: 1328 PEEDKLFYNNIIYGLKQMYYVGTKSLRQSINAP------IQGGASDFTFVSLICLNHAFL 1381

Query: 616  NATKAGYDI---------------VLTVHDEIVCETPDTDE-----FNASMLYHLMTSN 654
               +    +               + TVHD IV + P   +         ++  +M   
Sbjct: 1382 TLKELNIPVYNKETNQIEYIRPVLIGTVHDSIVIDIPVHTKHYIVHKVIKLVKTIMEDP 1440


>gi|291165127|gb|ADD81154.1| gp49 [Rhodococcus phage ReqiPine5]
          Length = 600

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 97/528 (18%), Positives = 170/528 (32%), Gaps = 95/528 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGF--DDHPVELWDCVHDPVMPQVLKEA--LENTDVTIVA 70
           D+   GI        +    F +   D              P+ L EA  +      +V 
Sbjct: 40  DIETKGIDI----FTIRCITFSWHGSDGRTHGILLDMGRR-PEDLAEAKRIAQRAEHLVF 94

Query: 71  HNSYFERTVLKAC--FNLDIPIHRWICTLVLARS----NGLPSALKAVGEALKLSSQKME 124
           HNS F+   L        +  + R   T+VL+R       +P  L+A+   +++S +  +
Sbjct: 95  HNSPFDVVPLVHFGVMGRE-EVFRVWDTIVLSRMAFPDVMVPKKLEAMAVKMRVSDELPD 153

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR--------EIFKRL- 175
             K +I     G   +  +  +    R A+R        D  VT          I ++L 
Sbjct: 154 GLKMMIK--ASGLKSKDGWYAHGDIDRPAYR---HGAIADTVVTLRLLPVLIDAIHRKLT 208

Query: 176 -EPLSSK-----EQELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             P + +     ++    +D+ +         + RG  VD+   HT    V  +  + + 
Sbjct: 209 DHPFTDRGLQTTDEAQALVDREMLVNRVMLWRSARGIRVDLDYMHTYRDSVADKVARAEL 268

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           EL++      + ++ + KL     L          +    +         P A     +R
Sbjct: 269 ELKNYGVDPGNGAQLVAKLDEVGGLPENWPRTATGKLASNKDAMEKLGDHPLA---LAHR 325

Query: 281 MRASRSAV-LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           + A  + +   L+ +       GR   ++  LGAS                         
Sbjct: 326 IYADETKIGQYLDAVASRAEVTGRCHPSVAILGAS------------------------- 360

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                    +  SDP   Q  +D     V+  +G+ L+  D + IE  V+A MAG+Q  L
Sbjct: 361 -----ATGRTSYSDPPLQQFSADARP--VLVDDGQGLMSVDWSAIEPVVVANMAGDQEFL 413

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
             F  G DLY             +     R   KV+ L   Y  G     KMA+    + 
Sbjct: 414 APFVAGADLYE---------PIQRAAGIDRKRAKVVLLGTLYGEGKG---KMAADLKCSY 461

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                + +           E F   ++    +  I     G   +  K
Sbjct: 462 EQAVQIQR--GMFSAMPKVERFLETVKSVAAQFGIIVTADGRILDVPK 507


>gi|213421456|ref|ZP_03354522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 236

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 80/270 (29%), Gaps = 57/270 (21%)

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            N +         + +    K    +++  +     T   +          A    G Y 
Sbjct: 8   LNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYA 57

Query: 162 KGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
             D  VT ++  ++ P   +           E  L  +   +   G  +D A+ H  ++ 
Sbjct: 58  AEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEE 117

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
           + +   +L+++   +  G   +    ++L+T LF + G+     T     +T + VL   
Sbjct: 118 ITLRLAELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEEL 176

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
               P    +                                 + G ++         P 
Sbjct: 177 ALDYPLPKVILE-------------------------------YRGLAKLKSTYTDKLPL 205

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDP 356
              P+  R H    Q +T      ++D +P
Sbjct: 206 MINPKTGRVHTSYHQAVTATGRLSSTDTEP 235


>gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 311

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 127/358 (35%), Gaps = 74/358 (20%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +      V+       + ++     +L+QE   +  G         +L+ 
Sbjct: 18  ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVA-GERFLIMSNNQLRE 76

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF +  L                          + + R    R+ + K  +  EA+N  
Sbjct: 77  ILFGKLKL-------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQ 111

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G  +  +Q                    P+  +  E+                   +I++
Sbjct: 112 GISKHPIQITT-----------------PKNFKGKED-------------------KILT 135

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNV 419
              R+  ++S+G   + AD + IE R+LA ++G+   LK F+  E  D++ T  ++  +V
Sbjct: 136 ISPRAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDV 195

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              QVT   R   K +  A+ Y  G    +++A+  G+ +   A  +++    ++++  +
Sbjct: 196 PVEQVTHADREQTKKVVYAVVYGAGK---ERLAACLGVPVQEAAQFLESFL--QKYKKIK 250

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           +F R       +       +G      ++   + H+   +L  +  +     +   ++
Sbjct: 251 DFARAAIAQCHQTGCVVSIMGR-----RRPLPRIHAHDQQLRAQAERQAVNFVVQAQS 303


>gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens]
          Length = 312

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 126/358 (35%), Gaps = 74/358 (20%)

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +      V+       + ++     +L+QE   +  G         +L+ 
Sbjct: 19  ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVA-GERFLITSNNQLRE 77

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF +  L                          + + R    R+ + K  +  EA+N  
Sbjct: 78  ILFGKLKL-------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQ 112

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G  +  +Q                    P+  +  E+                   +I++
Sbjct: 113 GISKHPIQITT-----------------PKNFKGKED-------------------KILT 136

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNV 419
              R+  ++S+G   + AD + IE R+L  ++G+   LK F+  E  D++ T  ++  +V
Sbjct: 137 ISPRAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDV 196

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              QVT   R   K +  A+ Y  G    +++A+  G+ +   A  +++    ++++  +
Sbjct: 197 PVEQVTHADREQTKKVVYAVVYGAGK---ERLAACLGVPIQEAAQFLESFL--QKYKKIK 251

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           +F R       +       +G      ++   + H+   +L  +  +     +   ++
Sbjct: 252 DFARAAIAQCHQTGCVVSIMGR-----RRPLPRIHAHDQQLRAQAERQAVNFVVQAQS 304


>gi|163937889|ref|YP_001642775.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
 gi|163865744|gb|ABY46800.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
          Length = 359

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 134/360 (37%), Gaps = 59/360 (16%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIE 385
           R    H+ + +++T+         +   I +       VR      EG   + ADL+ IE
Sbjct: 9   RDDNFHDIVMKLVTNDDKISKGS-NLQNIPARSKEGARVRGAFKPQEGWFYLAADLSQIE 67

Query: 386 ARVLAWMA----GEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTK--------DQRAIG 432
            R++A +     G+      F  G DLY T     FN+     V K          RA+ 
Sbjct: 68  PRIMAHIMWTIYGDNSLRSIFTAGRDLYTTMAMMVFNLDEKYCVDKAYDPTGTFKPRAMM 127

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K   LA  Y      F    +T G+++         N   E+++ A      M  +  + 
Sbjct: 128 KTGVLAKSYDQQVGNF---CNTMGVSIEV------GNMFYEKFDTAFPSFINMVRDKRKF 178

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A +  +  T   R     +++  +++E W+++ +  E+ + +     AR R+ V      
Sbjct: 179 AYDKGYSETLYGR-----KRRFPQLAE-WSKIVKRNERKLMDLYIERARIRKKV------ 226

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                    L +   L+   +   R+ +        R          +++Q    DIL  
Sbjct: 227 VKSRYDFERLDTLEELIKP-MAEMRNMVGY----WERAS------FNSVIQGTGADILKL 275

Query: 613 GMMNA----TKAGYDIVLTVHDEIVCETPDTDEF--NASMLYHLMTSNPSWAKGLPLKAE 666
            M+       K G+ +  ++HDEI  E P  D    N  ++  +MT +      LPLK++
Sbjct: 276 NMIRLYRECQKRGWYLNASIHDEIKVEVPRKDLTLENCDLITDIMTKSVE--LSLPLKSD 333


>gi|307106799|gb|EFN55044.1| hypothetical protein CHLNCDRAFT_134899 [Chlorella variabilis]
          Length = 1781

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 111/327 (33%), Gaps = 56/327 (17%)

Query: 165  VTVTREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
               +R  ++ ++P            L  +E  L  +   +   G  +D     +L   ++
Sbjct: 1460 AAASRAAWEEVQPQLQAINGSTMAVLLEQEMPLAVVLAGMEAVGVGIDTQHLQSLRSQLE 1519

Query: 213  VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET----GLHLEDLTETTCQRVLSSNKK 268
              R  ++ E+     G        +++   LF +     GL      +   +   S+NK+
Sbjct: 1520 QRRKDIELEIAR-ALGRRLDLSKFKEVSDVLFGKLEGQLGLQPPPCAKKLKRGGYSANKE 1578

Query: 269  L-----------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL-GASRT 316
            +            P    +  +R  A   +V  +  L++   +   L   L+   GA+  
Sbjct: 1579 VMQALVRLNPDCPPVVKLIAEHRRLAY--SVWFIRQLLQCARAGAALAQQLEPAAGAAPL 1636

Query: 317  GRWSG-----CVFPPQN-----------------LPRPSRSHEELDQIITHLPTSITSDP 354
            GR  G      V    N                 +PR       L            S  
Sbjct: 1637 GRAGGGPRIWTVLHQTNSDTGAGAVLLGLLRRCCVPRTHELRMLLKGTAREGDDVSAS-- 1694

Query: 355  DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-DLYVTTY 413
               +++   VR   +A+ G  L+ AD   IE R++A  + ++  L  F+ G+ D +    
Sbjct: 1695 GQHRLLEANVRKAFVAAPGCVLLGADYRAIELRMMAHFSQDEKLLATFQDGQHDPFRLLA 1754

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALG 440
            A+       QV++  R + K ++  + 
Sbjct: 1755 AKWLGKELGQVSQTDRQLIKHLQYGIM 1781


>gi|109392407|ref|YP_654951.1| gp54 [Mycobacterium phage Cooper]
 gi|88910241|gb|ABD58171.1| gp54 [Mycobacterium phage Cooper]
          Length = 617

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 96/513 (18%), Positives = 155/513 (30%), Gaps = 65/513 (12%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHN 72
           D+   G+       CV   A+ + D   +    D   D      +  AL +   T+  HN
Sbjct: 60  DIETPGLDNVFTINCVTA-AWDWPDGGTQTILLDPARDEEH-WEVAVALLHAARTVAFHN 117

Query: 73  SYFERTVLKAC-FNLDIPIHRWICTLVLARS----NGLPSALKAVGEALKLSSQKMEEGK 127
             F+   L       D  I R + TL++ R       +P  L A+     L     + G 
Sbjct: 118 VPFDAPPLYHAGLINDSTIRRIVDTLLITRFAVPDVMVPKNLTALS-VRHLGLDDDKGGL 176

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           E   +    +T +  ++           ++      D   T  +    EPL   +   W 
Sbjct: 177 ERAFKAAGYKTQQAGFEGMDITSP----VYRYGAMADTVATLRV----EPLMRAKALHWA 228

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK------LKT 241
            D      G          L     V R  L +    L        R  E+      L  
Sbjct: 229 TDHPFATYGATTQAEAEELLATQETVHRVMLRRSAVGLAVDRAYLDRYAEQVDIDRNLAI 288

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEA 297
                 GL             L+   +L     +    ++RA+++ +  L+         
Sbjct: 289 AELAAHGLEGGSGKGAKLVEYLAERGELPANWPRTPTRKLRATKADLDGLDHPLAAAQRK 348

Query: 298 MNSDGRLRGTLQF--LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           +    ++ G L+     AS TGR   C      L              +         P+
Sbjct: 349 LAQIDKVMGYLEKVDRQASVTGR---CHPQVGVL------------GASATGRMAYGSPE 393

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
             Q  +D     +I  +G+ L   D + IE   +A MA +   L  FE GEDLY      
Sbjct: 394 LQQFPADAR--AIITDDGQGLTSIDWSQIEPVTMALMAKDHEFLAPFEAGEDLYE----- 446

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                  +     R + KV+ L   Y  G     K+A   G    + A +        + 
Sbjct: 447 ----PIQRSAGIDRPVAKVVLLGTMYGLG---IAKLARQIGHTEESAAQI------RRQM 493

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            +A   C          A     + TA  R+  
Sbjct: 494 FEAMKGCERWMRKVQNVAETYGRVVTAGGRILP 526


>gi|308497564|ref|XP_003110969.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
 gi|308242849|gb|EFO86801.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
          Length = 927

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 78/510 (15%), Positives = 149/510 (29%), Gaps = 129/510 (25%)

Query: 165 VTVTREIFK--RLEPLSSKEQELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVER 215
           V   + IF   ++  + S  +E ++L+         +   G   D +  ++         
Sbjct: 498 VFAMKRIFDDLKVSAIQSSSEESFHLEMSSCQSVLNMFYTGISFDHSKCNSFITNTRQRI 557

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--------HLEDLTETTCQRVLSSNK 267
             L++E+  L +G   +     ++   +F   GL         ++     T + +L   K
Sbjct: 558 ELLEEEIWRLAHG-KFNIDSSNEVANVIFHRLGLIYPETSSCKMKQRHLPTNKLILEQMK 616

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  ++   R          L   + +     R+   ++   A  TGR    V   Q
Sbjct: 617 NQHKIVGKILEYRHIQHTLTQCLLPLSIYST----RIHCRMEMCTA--TGRILTTVPNLQ 670

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P+                                 R    AS G+ L+ AD   +E R
Sbjct: 671 NVPKR-----------VSTEGLSA-------------RQLFKASSGRILISADFKQLELR 706

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAIGKVMELALGYQGGAK 446
           VLA ++ +   ++      DL        F  ++        R + K +   L Y     
Sbjct: 707 VLAHLSNDSKLIELICADRDL--------FGELSVEWN--FSRDVVKQLCYGLIY----- 751

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G+   T A L K   A     +AE          P   +     GT     
Sbjct: 752 ---------GMGPKTLAELTKVKVA-----EAEKMLCSFFSMFPGLYLYLSNKGTYL--- 794

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                     V+ + + +++  E   +         R+      +  ++           
Sbjct: 795 ---------YVTGVRSYINETKEHVSKEECVQTILGRKKFLKSGLTGEE----------- 834

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622
                     R  +N T                  +Q  + +I    ++         G 
Sbjct: 835 -----KARVERVAVNYT------------------IQGTASEIFKVAIVEIESKIKAYGA 871

Query: 623 DIVLTVHDEIVCETPDT-DEFNASMLYHLM 651
            IVLT+HDE + E P+      + ++   M
Sbjct: 872 RIVLTIHDEFLVECPENRTPVISEIIRDCM 901


>gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001]
 gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001]
          Length = 1757

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 88/562 (15%), Positives = 159/562 (28%), Gaps = 132/562 (23%)

Query: 6    IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-VELWDCVHD-PVMPQVLKEALEN 63
            +D ET S                   L+A      P + L          P  L   L +
Sbjct: 1146 LDLETCS----------------ATQLWAPAVPGRPFIRLVGTEAGIDTDPSSLVPWLAS 1189

Query: 64   TDVTIVAHNSY-FERTVLKACFNLDI----PIHRWICTLVLARSNGLP------------ 106
                ++AHN + F+   L     LD+       + I T+VLA +   P            
Sbjct: 1190 GG-RLIAHNGFGFDYLALARHHGLDLLQAAEEGKLIDTMVLALALDPPKPPVDGKLSGGQ 1248

Query: 107  ----SALKAVGEALKLSSQKMEEGKELIARFCKGETHEC--------LYDRNKPNHREAW 154
                 +L    E   +   K  + K+L     K   H           Y     NH +  
Sbjct: 1249 IARLYSLDRCAERAGVPG-KTNDLKKLARDAAKAHGHTGKPKQLEAIGYGLIPRNHPD-- 1305

Query: 155  RLFGEYCKGDVTVTREIFK------RLEPLSSKEQELWYLDQT-INDRGYCVDVALAHTL 207
              +  Y +GDV   R ++       +L P + +E  +     T I   G  +D+ L  + 
Sbjct: 1306 --YLAYLQGDVAACRAVYDALVPDGQLSPYARREMRVMGRLVTGITLHGTRLDLQLTQSR 1363

Query: 208  NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF------------LETGLHLE--- 252
               ++  + +    L +  YGL + +         L              + GL L    
Sbjct: 1364 YDAIEARKEECRSRLVA-DYGLPTMTSSGAAAANPLSCKGAAEAITKAAADVGLVLPLTA 1422

Query: 253  ----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
                  ++     +L   ++   Q        + +   A     T ++   SDGR+    
Sbjct: 1423 TGKPSTSKDALGPLLEQVREQGNQTQTELLETILSLTGARSVYGTALDHCQSDGRIH--- 1479

Query: 309  QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CV 364
                             PQ  P            +        ++P              
Sbjct: 1480 -----------------PQVAP------------LQASGRFSLTNPGITVFGKRGGRVTE 1510

Query: 365  RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            R+  +   +  +L+ ADL+ I+ R +A  A +   L+ F+ G D +    A         
Sbjct: 1511 RAIFLPDADDHRLLAADLSQIDMRAMAAHAQDPAYLELFQPGRDAHSEIAAAV------- 1563

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                 R+  K +     Y        +     G++                +     +  
Sbjct: 1564 --GLSRSDAKAIGHGWNYGMSVNGMVR----HGISQALAEQF--DQGMRRSFPQLVAWRD 1615

Query: 484  WMQENHPEHAIEDLFIGTACER 505
             ++E      + D   G     
Sbjct: 1616 QIRERAASGQLLDNGFGRMMRP 1637


>gi|325115196|emb|CBZ50752.1| hypothetical protein NCLIV_012190 [Neospora caninum Liverpool]
          Length = 1235

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 87/523 (16%), Positives = 142/523 (27%), Gaps = 130/523 (24%)

Query: 169  REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                + ++PL ++E  +  L   ++  G  +       L   +D     +++E+      
Sbjct: 674  LRCHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDEALVAVEKEVNRTAGT 733

Query: 229  LVSSSRCLEKLKTWLFLETGLHLEDLT------------------ETTCQRVLSSNKKLT 270
                     +L   LF    L L   T                   +T + +L     L 
Sbjct: 734  SSVQVSSPAQLSNLLFDHLALPLPARTFAAVRGNRPRRAAKRTLARSTAEEILQEIVDLH 793

Query: 271  PQAIQVFNNRMRASRSAVL---------------------------KLNTLVEAMNSD-- 301
            P    + N R  A   +                             KL   V A  +D  
Sbjct: 794  PVVPLIQNFRSLAKLRSTYLESTAALSLSSSSSLSAPEGASFKVAFKLYDEVPAGEADVH 853

Query: 302  -----GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                 G+ +   +    S +   +   +P     +  R     +Q  T      +S P+ 
Sbjct: 854  RNERKGKAKDGEENSEGSISLADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNL 913

Query: 357  LQIISDCV-------------------------------------------RSCV---IA 370
              I    V                                           R      + 
Sbjct: 914  QNIPKVMVLPSLSSLTSSSSSCSSSSPSSDVSPSSPSSSRLRYTLPKTVNCREAFRDDVQ 973

Query: 371  SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED---------------------LY 409
                 +V AD A IE R+LA   G +  L++  TG D                     LY
Sbjct: 974  DGSAVVVAADYAQIEMRLLAHFCG-KGPLQSLLTGRDTREARGSAPDDESETSKEPIDLY 1032

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
                A    + P+QVTK+ R   KV  LAL Y  G       A    ++L   +     +
Sbjct: 1033 REMAALYAEIPPSQVTKELRDKVKVTCLALIYGSGTCTI---ARQMNISLAAASAF--RS 1087

Query: 470  SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                 + D  +F R    +      ED F+ T   R ++   +  S  S +     +   
Sbjct: 1088 KFLFVFPDVSHFIR----SIVAKGREDGFVTTLTGR-RRYIPEAKSNSSHVRALGERLSV 1142

Query: 530  QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             +   G A    K   + L             LP    L   D
Sbjct: 1143 NSCIQGSASDIMKIAMMRLQAELLSFPWDPHALPPRVLLSVHD 1185


>gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobacillus sakei]
          Length = 343

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 66/176 (37%), Gaps = 6/176 (3%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++ +  +  E  L  +   +   G  VD +    +          L++++ +   G   
Sbjct: 161 HQQFDLFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEA-GETF 219

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF + GL +   T+T       VL   +K  P    + + R  A   + 
Sbjct: 220 NINSPKQLGVILFEKMGLPVVKKTKTGYSTAVDVLEQLRKDAPIVQTILDYRQIAKIQST 279

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
             +  L+++++ D ++         ++TGR S      QN+P       ++ Q   
Sbjct: 280 Y-VEGLLKSIHQDNKVHTRY-LQTLTQTGRLSSVDPNLQNIPVRLAEGRKIRQAFV 333


>gi|154412700|ref|XP_001579382.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
 gi|121913588|gb|EAY18396.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
          Length = 709

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/373 (13%), Positives = 112/373 (30%), Gaps = 54/373 (14%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDV 213
           +  T E+F++     +K+ +L+   + I  R            + +D+         ++ 
Sbjct: 285 IDKTLELFEKF----TKDDKLYKWYKDIEMRHLRFMGTIHQKSFKLDLENMKFERYKIES 340

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           E  ++  ++  L+ G   +     ++   LF +  L     +  T         K     
Sbjct: 341 ELKEISDKIYGLS-GCKFNILSPFEVSEVLFEKMKLKSNKFSAQT---------KTIDSR 390

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +   +R  A  ++++  +     +    + R       +     W       Q      
Sbjct: 391 HKNIKHREFAPTNSLVLDDINHPIVELIKKFRSL-----SKLVSNWLSFD---QKSDSEG 442

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIASEGKKLVVADLAGIEAR 387
             H  +  + T      +  P+   I S        +R   +    K ++  D + +E R
Sbjct: 443 ILHPWILVLSTATGRISSVFPNLQNIPSFNDEQSLNIRKFFLPPTKKTMISVDYSQLELR 502

Query: 388 VLAWMAGEQWKLKAFE-TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           +LA ++ ++           D++       FN     VT+D R   K    A  Y    +
Sbjct: 503 ILAHLSDDKKLKDLCNVDQGDIHSMIAKMIFNK--NNVTEDMRKEAKTNIYATIYGKKVE 560

Query: 447 AFQK------------MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                             + T +       +   +       +        +      ++
Sbjct: 561 NMSGISVIDIFQGIRSFITNTVIETQNKGFIKTFSGKYRFLPNIRCQKVSDKMRDERISV 620

Query: 495 EDLFIGTACERVK 507
             +  GTA + VK
Sbjct: 621 NTIIQGTAADFVK 633



 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDI-VLTVHDEIVCETPDT 639
              I+Q  + D +   ++N  K    I ++ +HDE + ET + 
Sbjct: 620 VNTIIQGTAADFVKFALINVIKQTNLIPIIQIHDEWIFETDEE 662


>gi|145350924|ref|XP_001419843.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580075|gb|ABO98136.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 460

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 124/376 (32%), Gaps = 42/376 (11%)

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK--------LKTWLFLETG 248
              D          +D    KL++   +  + ++ SS  + +        L+  L+    
Sbjct: 19  IPFDARKMREEMATMDDRLKKLEEYALTQKWIVLDSSVSIARRALTNNTYLQDRLYKHLK 78

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL---NTLVEAMNSDGRLR 305
           L      +T+     ++ +KL  Q+   F   +   RS   +    +T++     D R+R
Sbjct: 79  LTPPPGAKTSI--DANNLRKLYEQSNHPFPLLIIEHRSVFKRRGFADTILGMYADDSRIR 136

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            ++ F      GR +       +L       ++                  L      +R
Sbjct: 137 YSI-FQTNHDCGRLAHSEPNFHSLAHDMTCGDQF---------------YGLDAPKISIR 180

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET------GEDLYVTTYARSFNV 419
           S  +    K  V AD + +E R++A  +G++  +   +        +D +    ++ +  
Sbjct: 181 SAFVPPAAKVFVRADYSQLELRIMAHFSGDRTLIHMLQNPEPNNLKDDPFTMLASKWYRK 240

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           AP  V  ++R   K +   L Y  GA   +K+AS   +        V             
Sbjct: 241 APDTVLAEERTNCKNLVYGLLYGSGA---KKLASDLRMCEEAAKSEV--ARFKSMLPRLM 295

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            +   +     E   + +   T      + +   HS+ ++      +    T+  G A  
Sbjct: 296 EWLDGIVIRAREE--KPIARVTTISARHRYFPDLHSKNNDDRAAAERQAVNTVCQGSAAD 353

Query: 540 ARKRRDVPLVYMKKDK 555
             K   V ++   + K
Sbjct: 354 IFKTAVVRVIDTLRTK 369


>gi|322786085|gb|EFZ12696.1| hypothetical protein SINV_15346 [Solenopsis invicta]
          Length = 1172

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 50/282 (17%)

Query: 228  GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            G+  + + L++L   +  E              + L +  K    A + FN    +S+  
Sbjct: 926  GIGVNLKSLQELSAVISDEM-------------QSLET--KAYNLAGRKFNF--SSSKEV 968

Query: 288  VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
               +  L++   +D R+RG       + TGR S      QN+P+                
Sbjct: 969  GQMIYPLLKLAQNDSRIRGNCITC--TVTGRVSMHEPNLQNVPK---------------- 1010

Query: 348  TSITSDPDPL-QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                 D +     +   VR   + + G  ++ AD   +E R+L   + +    K  +   
Sbjct: 1011 -----DFNFADNNLVISVRMAFVPALGNIMLSADYCQLELRLLTHFSQDSVLCKIMKQPG 1065

Query: 407  DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
            D++    A+  NV   QV  + R   K +   + Y  G    + +A    ++       +
Sbjct: 1066 DIFKNIAAKWNNVTEEQVNNEMRQRTKQLCYGMIYGMGV---KSLAENLCVSEPEAQEFL 1122

Query: 467  KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            ++              +W+ +   E A  D ++ T   R ++
Sbjct: 1123 ES-----FMGAYPGIYKWLND-VLEEAHRDGYVATLLGRRRQ 1158


>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
          Length = 647

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 109/321 (33%), Gaps = 50/321 (15%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55
           ID ET + +D       + AE   ++ F+  FD +        HD            + Q
Sbjct: 350 IDTET-TSLD------YRIAE---MVGFSVAFDANDAYYIPLAHDYEGAPEQLNRDAIIQ 399

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113
            +K  LE+  V  + H+  ++  + +   N  I +  W    +LA    N + +      
Sbjct: 400 QIKPILEDPSVEKIGHHLKYDAHIFE---NHGIHLQGWYFDTMLASYVLNAVTTRHGMDD 456

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A    S      +++  +  K +T   +               G Y   D  VT  +++
Sbjct: 457 VARVYLSHLTTTFEQVAGKGAKQKTFNQI----------EIETAGHYAAEDAHVTYRLYE 506

Query: 174 ----RLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
               +L+ +          E  +  +  T+ + G  +D++    L+         L+ ++
Sbjct: 507 VLERKLKEIPELINILHHIEMPVASVLATMEENGIELDLSFLDQLSVDFANTIQNLENQI 566

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKL-TPQAIQVFNNR 280
             +  G   +    +++   LF + GL     T T       +  +K+  P    +   R
Sbjct: 567 IEIA-GESFNVGSPKQVGEVLFEKLGLKGGKKTATGQYSTSEAVLEKIDHPITELIIEYR 625

Query: 281 MRASRSAVLKLNTLVEAMNSD 301
                 +      LV+  N D
Sbjct: 626 GLTKLRSTYT-EALVKQANPD 645


>gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262]
 gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262]
          Length = 661

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 143/481 (29%), Gaps = 70/481 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKE 59
           M  L +D ET    D  +       E   ++  ++ F          V+  +     L +
Sbjct: 26  MNFLVLDLET--DTDGDERSPDATWEQNDIVSASWVFGTGGRGTEKFVYGGIHDMDELIQ 83

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN-------GLPSALKA 111
            +   D   VAHN+ F+   +K      +   R  +   +LA          G   AL  
Sbjct: 84  DMYEADFV-VAHNAKFD---IKWLIRAGLDPSRILVADTMLAEYVLTGNLKAGKKGALTL 139

Query: 112 VGEA-LKLSSQKMEEGKELIARFCKGE--THECLYDRNKPN---HREAWRLFGEYCK-GD 164
              A   L   K     +L+             L  RNK +    R  W    +     D
Sbjct: 140 GALAKQYLGVTKDPLVDKLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLKLRDEMMERD 199

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V         L P+ +           I   G  +D       + I      +++ +L  
Sbjct: 200 VIHLFYNRCLLSPVLA----------DIELNGVHLDKERVCEEHDIASRRMAEVEADLMD 249

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +  G   + R + +++ +++    L  + L +   +          P   +V     R  
Sbjct: 250 MIDGR--NPRSVPQMQEFIYDV--LKFKPLKKRGVEWR--------PTGEEVLQFEARTK 297

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     L+   E    +  L   L +     T R                 + + +Q  T
Sbjct: 298 KQQA-FLDLKKEFAQLNADLSKNLDYFYGVVTERE------------DCLFYAQFNQAQT 344

Query: 345 HLPTSITSDPDP------------LQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
                 +S                LQ      +    A      ++  D A IE RV  +
Sbjct: 345 VTHRLSSSGIKTKFEMYPKAKSIQLQNSPRKYKRLYSARNPDWYVIEMDGAQIEFRVAGY 404

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +  +    +    G D++  T +   +    +VTKDQR   K       Y G      +M
Sbjct: 405 IGQDTRICQDIVDGVDVHRFTASVLNHCDEEEVTKDQRTDAKPDTFKPLYGGQYGTDDQM 464

Query: 452 A 452
           A
Sbjct: 465 A 465


>gi|33322741|gb|AAQ07105.1|AF496417_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 101

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 361 SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   + S     +   D + IE RVLA ++ +    +AF+TG D++  T  + F++
Sbjct: 11  GKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHL 70

Query: 420 -APAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            +  +VT  Q    K +   + Y        
Sbjct: 71  SSVDEVTSLQXRRAKAVNFGIVYGISDXGLS 101


>gi|308808137|ref|XP_003081379.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
 gi|116059841|emb|CAL55548.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
          Length = 1489

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/521 (14%), Positives = 143/521 (27%), Gaps = 132/521 (25%)

Query: 168  TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES--- 224
              E    +  L   E         +       D          +D    KL++  +    
Sbjct: 1004 ECEAKDLIRALIRVEMPFVAPIVAMETVKVPFDPRRLKEEIAAMDDRLKKLEEYAKKQKW 1063

Query: 225  --------LTYGLVSSSRCLEKLKTWL------FLETGLHLE--DLTETTCQRVLSSNKK 268
                    L      ++  ++ L   L        E     +     +       ++ +K
Sbjct: 1064 LDPLHPANLRRAFTDNAYLVKCLYEHLKLTPPAGSELAFTKDWVSNAKECTVSTKTTYEK 1123

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAM------NSDGRLRGTLQFLGASRTGRWSGC 322
            +  Q+  +F   +   R +V K  T  + +      + D R+R ++       T    G 
Sbjct: 1124 VHEQSGHMFPLLILEHR-SVFKRLTFADVLLGMYGESMDSRIRYSIHQ-----TNHDCGR 1177

Query: 323  VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
            +         +        +   +      D     +IS  VRS       +  +  D +
Sbjct: 1178 L---------THIEPNFHSMAHDMKCVDAFDGLDAPVIS--VRSAFTPPADRVFLRVDYS 1226

Query: 383  GIEARVLAWMAGEQWKLKAFET------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             +E RV+A  +G+Q  +   +        +D +     +   V    V+ D+R   K + 
Sbjct: 1227 HLELRVMAHFSGDQTLIALLQNPEPVNAHDDPFTMLACKWRGVPLNAVSVDERQRVKNLV 1286

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
              + Y  G    +++A    L+                 E A+     ++   P      
Sbjct: 1287 YGILYGSGV---KRLARELRLSD----------------EKAKILVDELKSMLPT----- 1322

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                         WR                  + IE          + +P V     ++
Sbjct: 1323 ----------LMNWR-------------DDVVARAIEE---------KPIPRVTTISSRH 1350

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                 L S         G+ RS                 +    + Q  + DI    ++ 
Sbjct: 1351 RYFPELLS-------RSGDERSAAER-------------QAVNTVCQGSAADIFKTAVVL 1390

Query: 617  ATKAG--------YDIVLTVHDEIVCETPDTDEFNASMLYH 649
              +            +VLTVHDE V E   +    A+ +  
Sbjct: 1391 VMETLRAKHLLDRCQLVLTVHDEAVFEVNASVAKAAARIVR 1431


>gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 551

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/380 (14%), Positives = 108/380 (28%), Gaps = 55/380 (14%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG-LHL 251
           ND G   +        +       KL   +E L   + + +         L    G +  
Sbjct: 171 NDEGIATEGK------KTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLRSLAGKIPT 224

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           + + +    +    +        Q   +      +A        +   +   +    +  
Sbjct: 225 DHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYG-TAYEAFGGGKKGREACHAIAALCEVF 283

Query: 312 GASRTGRWSGCVFPPQNLPRP---SRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363
              +    SG + P Q         R H  L+ I T         P+             
Sbjct: 284 SIDKL--ISGFIVPLQGDRISCKEGRIHCSLN-INTETGRLSARTPNLQNQPALEKDRYK 340

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A+ G  L+VAD   +E R+LA +   +  L+AF+ G D +  T    +      
Sbjct: 341 IRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDA 400

Query: 424 VT--------------------------KDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           V                             +R   K++  ++ Y   A          GL
Sbjct: 401 VEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTA---------VGL 451

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           + +    + +     + W          Q+     A+E   + T   R ++     H+  
Sbjct: 452 SWDWKVSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGP 511

Query: 518 SELWNELHQAFEQTIENGKA 537
            +    + +A       G A
Sbjct: 512 GQ-KGHVERAAINAPVQGSA 530


>gi|295426488|ref|ZP_06819138.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295063856|gb|EFG54814.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 122

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 8/128 (6%)

Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            EI ++LE  P+   E   +++DQ INDRG  +D  L +   +       +  Q  + LT
Sbjct: 1   MEITQKLERFPVPKNEWGNYWMDQDINDRGIRIDQQLVNNAIRCQKNFHDQYLQVSQKLT 60

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
              +++     +LK WL  + G+    L++    ++L      T    QV + R   S+S
Sbjct: 61  G--LANPNPPLQLKDWLH-QQGVKTNSLSKAAVTQLL---HTTTGTVHQVLSLRQLLSKS 114

Query: 287 AVLKLNTL 294
           +V K   +
Sbjct: 115 SVKKYQAM 122


>gi|326919514|ref|XP_003206025.1| PREDICTED: HAUS augmin-like complex subunit 3-like [Meleagris
            gallopavo]
          Length = 1077

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 86/248 (34%), Gaps = 32/248 (12%)

Query: 337  EELDQIITHLPTSITSDPDPLQIISDCVR--------------------SCVIASEGKKL 376
               +Q  T      +  P+   I    VR                    +  ++ +G   
Sbjct: 776  PTWNQTGTVTGRLSSKHPNIQGISKHPVRIKKKQYIKGKEEEIVTISPRALFVSKKGYTF 835

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            + AD + IE R+LA ++ E   LK F+  E  D++ +  ++   +   QV +  R   K 
Sbjct: 836  LAADFSQIELRILADLSAEPELLKLFQEPETADIFTSLASQWKGIPSEQVKQTDREQAKR 895

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +  ++ Y  G    +++A   G+     +  +++       +  +    + ++   +   
Sbjct: 896  IVYSVVYGAGK---ERLAECLGITPLEASCFIES-----FMQKYKKVHEFTKKTIGQCQ- 946

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
               ++ +   R K+     HS+  +L  +  +     +  G A    K   V +      
Sbjct: 947  NKGYVVSIMGR-KRLLANIHSQDYKLRTQAERQAVNFVVQGSAADLCKMAMVEIFTSVVV 1005

Query: 555  KNNLILML 562
               L   L
Sbjct: 1006 SPTLTARL 1013



 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 19/170 (11%)

Query: 498  FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
            + G   E+VK+  R++  R+   ++ ++ A ++ +     I   +       +M+K K  
Sbjct: 877  WKGIPSEQVKQTDREQAKRIV--YSVVYGAGKERLAECLGITPLEASCFIESFMQKYKKV 934

Query: 558  -----LILMLPSGRSLVYRDVGNNRSYLNTTTRQLT-REYTYGGKLTENIVQAVSRDILA 611
                   +     +  V   +G  R   N  ++    R      +    +VQ  + D+  
Sbjct: 935  HEFTKKTIGQCQNKGYVVSIMGRKRLLANIHSQDYKLRTQAER-QAVNFVVQGSAADLCK 993

Query: 612  EGMMNA-------TKAGYDIVLTVHDEIVCETPDT--DEFNASMLYHLMT 652
              M+               ++  +HDE++ E  D+   EF+A ++   M 
Sbjct: 994  MAMVEIFTSVVVSPTLTARLIAQIHDELLFEVEDSQIQEFSA-LVKRTME 1042


>gi|325171249|ref|YP_004251221.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512275|gb|ADX87732.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512343|gb|ADX87799.1| putative DNA polymerase [Vibrio phage ICP2_2006_A]
          Length = 710

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 108/756 (14%), Positives = 210/756 (27%), Gaps = 171/756 (22%)

Query: 4   LFIDFETRSPI-DLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVMPQVLKE 59
           L  D ET     D+ K     +       +  FG    D  PV L         P +++E
Sbjct: 17  LSFDCETTIRNHDIGKLQASPF--HPANKMVCFGCKTLDAEPVVLRP--EHADFPTIIRE 72

Query: 60  ALENTDVTIVAHNSYFERTVLKACFN--LDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              N  + +V  N  F+   +   +    D+  +  I    LA         K       
Sbjct: 73  ---NGVLLLVGQNIKFDLLWMMRTYPDFRDMLPNLCIWDTQLAEYLLTGQDHKMAS---- 125

Query: 118 LSSQKMEEGKEL----IARFCKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE-- 170
           L+   M+ G  L    IA F K      +   + P    E ++ +       V + +   
Sbjct: 126 LNELAMKYGGTLKDDRIAEFWKA----GVDTSDIPFPMLEEYQKYDVINTEIVFLEQVDQ 181

Query: 171 -IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            I + L  L+  + +       +   G   D  LA  L + +  E   +   + S+   +
Sbjct: 182 IIKEGLLNLTMTQMDALMATTEMEWHGMKFDKDLALELAKPLQAEIEDIKGAVSSVMEAV 241

Query: 230 --------VSSSRCLEKL----------KTWLFLETG----------------------- 248
                   V S+  +  L          K +++ + G                       
Sbjct: 242 GFPKDSINVGSNSQISALIFGGEVKYKEKDYIYNDDGTIATFKGGARAGQPKTKIFERSK 301

Query: 249 -----------------LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
                              + D + +  +     +  +      +   R    +      
Sbjct: 302 RIEGLCKPISPKGKNGSYPVGDDSLSKVKAKYKGDAVVEQLVGDILKFRQLE-KDVNTYY 360

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
                 +  DG L G       + TGR S      QN+    +  +  +           
Sbjct: 361 IGYASQVFPDGCLHGNYNHTK-TGTGRLSSSSPNLQNISNSGKDLQRKNN--KTTQRFHM 417

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           SD      I  C+ S        K++  D + +E    A + G+    K    G D +  
Sbjct: 418 SD------IKRCIISRF---PNGKIMECDFSQLEVVGGAVLTGDPMMKKDIIEGVDTHCM 468

Query: 412 TYARSFNV-APAQV-----------TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           + + +    +  ++           TK  R   K +  AL Y  GA   +  A   G+ +
Sbjct: 469 SASWANPKYSYEEILAGYKAEDPFFTK-LRKNAKPVNFALQYGAGA---ETAAENAGIEV 524

Query: 460 NTFAHLVKTNSAPE-EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                ++          +  ++          + +     +G    R    +R    R+ 
Sbjct: 525 EQAQAIIDNYYKRYCVLKQFQDDVIEQVNKSRQPSSRRTEMGMPAGRG--EYRNPTGRIF 582

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             +      F +      +    + ++ P           ++                  
Sbjct: 583 TFYEYDAPEFLRRRGQMTSFSPTQCKNYPTQSFATGDIVPMM------------------ 624

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET-P 637
            L    + L  + T   K                           ++ TVHD +V +  P
Sbjct: 625 -LGHIYKLLMTDKTLRDK-------------------------CLLIGTVHDSVVFDVHP 658

Query: 638 DTDEFNASMLYHLMTSNPSWAK-------GLPLKAE 666
           D  ++ A  +  LM   P + +        +PL  +
Sbjct: 659 DILDYAAKAVRGLMLRTPEYVERYLKVPFDMPLACD 694


>gi|48697456|ref|YP_024841.1| Pas55 [Actinoplanes phage phiAsp2]
 gi|47679674|gb|AAT36803.1| Pas55 [Actinoplanes phage phiAsp2]
          Length = 1415

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 89/499 (17%), Positives = 157/499 (31%), Gaps = 100/499 (20%)

Query: 6    IDFETRSPIDLTKCGICK-YAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            +D  T    DL      + Y ED    V + A   DD PV   +      + + +  A  
Sbjct: 822  VDVATF---DLETGDAERLYVEDGQAYVRIGAVAHDDRPV--IEL-GGSTVAEDV-AARI 874

Query: 63   NTDVTIVAHNSY-FERTVLKACFNLDIPI------HRWICTLVLARSNGLP--------- 106
                TI  HN   F+   L     + +           +   +LA     P         
Sbjct: 875  RQGATITGHNIMAFDLPALVRAEAMTMDEIHDLADEGRLFDGLLAARLLDPPMARDKGVD 934

Query: 107  ----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYC 161
                  L  +  +  L  +  +  K L  ++        +   +  P   E  RLF  Y 
Sbjct: 935  ATRKYDLGTLAVSYGLGEKYTDLSKPLAKKYGGDWGQIPVDTDDPDPERAEDARLFRTYM 994

Query: 162  KGDVTVTREIFKRL--------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
              D  ++R +  RL            ++E  +  L   I   G+ VD  L       VD 
Sbjct: 995  VQDAELSRRLHARLLEELGGTVPEYLTREHRVAALAAQIRHNGFLVDQPLLTERVAEVDQ 1054

Query: 214  ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG-----------------LHLEDLTE 256
             + +    L       +++++ +   K+ L    G                         
Sbjct: 1055 RKAESLAWLAEHAGVPLANAKGVAY-KSPLASTGGKEALEAALRAAGATSFWRTPNSGQF 1113

Query: 257  TTCQRVLSSNK---KLTPQAIQVFNN--RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
             T    +          P+  ++  +  R+  +RS      TL++ M+ DGR+   + F 
Sbjct: 1114 DTSGEHMKHLAREYHHLPKVREIAKHVFRIVGARSV---YQTLMDNMSPDGRVHPKIGFD 1170

Query: 312  GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             A  TGRWS        L +    H E                          R+ ++  
Sbjct: 1171 QA--TGRWSVTRPGLTVLGKRGGRHVE--------------------------RAVLLPD 1202

Query: 372  EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
             G+ L+ ADL+ ++ R +A ++ +   ++  +   D +       F       T D+R  
Sbjct: 1203 PGEVLMSADLSQVDMRAVAGLSQDLAYIEMLKKD-DPHAEIAKELFG------TADRREE 1255

Query: 432  GKVMELALGYQGGAKAFQK 450
             K +     Y  G KA  +
Sbjct: 1256 AKAIGHGWNYGRGIKAISE 1274



 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 36/298 (12%)

Query: 389  LAWMAGEQWKLKAFET-GEDLYVTTYAR-SFNVAPAQVTKDQRAIGK-----------VM 435
            +  +A E   L       + ++    AR  +      ++ D R   K           V 
Sbjct: 1120 MKHLAREYHHLPKVREIAKHVFRIVGARSVYQTLMDNMSPDGRVHPKIGFDQATGRWSVT 1179

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE----WEDAENFCRWMQENHPE 491
               L   G         +    +          +               +   ++++ P 
Sbjct: 1180 RPGLTVLGKRGGRHVERAVLLPDPGEVLMSADLSQVDMRAVAGLSQDLAYIEMLKKDDPH 1239

Query: 492  HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
              I     GTA        R++   +   WN       + I  G+ I     R      M
Sbjct: 1240 AEIAKELFGTADR------REEAKAIGHGWNYGRG--IKAISEGQEIEPALVRRFDA-SM 1290

Query: 552  KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
            ++    L+      R++       +  +         R +T G  L     Q  +RDI+ 
Sbjct: 1291 RERFGRLVEWQTEVRAVAEAGQLLDNGFGRLMRADPQRAHTQGPALMG---QGAARDIMM 1347

Query: 612  EGMMNATKAGYDIV-LTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
             G++   +    ++   +HDEIV   P  + +E   +++  L   +  W +G+P+ A+
Sbjct: 1348 TGLLRLDRRILPMLRAQIHDEIVFSVPVAEAEEVGRAVVEAL---SFEW-RGVPILAD 1401


>gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1]
          Length = 865

 Score =  104 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 89/567 (15%), Positives = 166/567 (29%), Gaps = 104/567 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           L  D E  S        +  Y   +  I FA+   +      D   +      +  +LK 
Sbjct: 190 LSADIEAWS--------LKFYEARLGTISFAWNQHEGIAFAVDFERNYEDALAIRLLLKG 241

Query: 60  ALENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTLVL------- 99
                   ++ HN  ++ TV+                  LD+    W  T ++       
Sbjct: 242 FFTEYKGKMLWHNGSYDLTVIIYELWMNGLLDQKGLLTGLDVMTKNWHDTKIITYLATNS 301

Query: 100 --ARSNGLPSALKAVGEALKLSSQKMEE---GKELIAR-----FCK----GETHECLYDR 145
                 GL +          L   K       K+L+        C     G+  + + D 
Sbjct: 302 CAGNHLGLKAQSHEYAGNYALDDIKDISLIPKKDLVRYNLIDSLCTWYVYGKHWQTMNDD 361

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-----REIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
           N+    +   +        + +T      E   ++E +  KE+  +Y  Q +       D
Sbjct: 362 NQRELYDDLFMPSLKNIIQMQLTGIPLDMEEVLKVEKILIKEKVTFY--QEMLKFSVITD 419

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
           +  +    +      +   +++    +    +     +L+  L+   GL + DLT+T   
Sbjct: 420 LVHSVRKRKCEKKNASLKTKQVTVEDFDDQFNPDSPLQLQELLYDIMGLPVIDLTDTKAP 479

Query: 258 -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
            T    +   K             +    S V K+ T                F  A + 
Sbjct: 480 ATGAETMEKLKFKVKTPEHAELLDLLIKFSKVNKIITS-----------FIPAFKAAPKA 528

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS------DCVRSCVIA 370
                 +F   NL              T      +S+P+  QI S        ++ C  A
Sbjct: 529 EDGWHYLFGFFNL------------GGTVSGRLSSSNPNLQQIPSSKSPYSKVIKKCFRA 576

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----- 425
            +G   V  D A +E R+ A    +  KLK +  G D +       F      +      
Sbjct: 577 PKGFLFVGLDFASLEDRISAVTTKDSNKLKVYTDGYDGHCLRAYAYFKDEMPDIINTVES 636

Query: 426 --------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                   KD R   K     L Y+G    +  +    G +  T   +   +   E +++
Sbjct: 637 INSIEGKYKDIRQKSKTPTFLLTYRG---TYMGLMQKCGFDEPTAKQI--ESRYHELYKE 691

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACE 504
           ++++     E   +        G    
Sbjct: 692 SDDWVNARLEEATKVGYVTAAFGLRVR 718


>gi|226323296|ref|ZP_03798814.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
 gi|225208486|gb|EEG90840.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
          Length = 162

 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 44/166 (26%)

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGG 444
           RV+A +A E W+ + F+ G D+Y T+ ++ F+V   +  +    R  GK+ +LALGY G 
Sbjct: 35  RVIAHLARESWRAEVFKNGGDIYCTSASQMFHVPVEKHGINGHLRQKGKIADLALGYGGS 94

Query: 445 AKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             A + M +   GL  +    LV                                     
Sbjct: 95  VGALKAMGALEMGLTEDELQPLVDA----------------------------------- 119

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                 WRQ +  +  LW +   A +  I+   +  +        +
Sbjct: 120 ------WRQSNPNIVALWWDFDTAIKNAIKMHCSTASHSLNYCSNL 159


>gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 842

 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 98/345 (28%), Gaps = 78/345 (22%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEAR 387
            R H  L  + T         P+     S       +R    A  G  L+V D + +E R
Sbjct: 553 GRIHPSLA-LDTTTGRLCCRKPNLQNPPSAHNDLYSIRKAFSARPGNTLIVGDYSQLELR 611

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA M+  +  ++    G D++       F      V             A G  G   +
Sbjct: 612 ILAHMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAV-------------ANGSVGRLHS 658

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                +T  + ++         S   ++       + M      +   +  +    +   
Sbjct: 659 RIDRRATVQVVIDDAEAHPGIPSVKTKFSTQRQQAKVM-NFSIAYGKTERTLAEEMDLPV 717

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
              R   +R    WN   +  E+     KA I R+ R     +                 
Sbjct: 718 TDIRDMFTR----WNNSKKGVER----WKAEILREVRACSGEFRH--------------- 754

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
                VG    +    +R+  RE T                            G  IV+ 
Sbjct: 755 ---PRVGGRHRHDGHASRRSRRETT--------------------------AHGVKIVMQ 785

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSN-----PSWAKGLPLKAE 666
           VHDE++ E P +       ++  LM        P +   + L  +
Sbjct: 786 VHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVD 830


>gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9]
 gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9]
          Length = 334

 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 83/247 (33%), Gaps = 27/247 (10%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QNLPR        D      P      P+              A     LV  D +  
Sbjct: 2   NLQNLPRSISDPTRFDYAF---PIKDYFGPNK-------------ARNHDTLVFTDYSAQ 45

Query: 385 EARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           EAR+   +AG++  + AF     D++  T +  F V   +VTKD R   K +   L Y  
Sbjct: 46  EARLAGVLAGDEQMINAFLDPSRDVHTETASLVFKVPVEEVTKDLRTRAKAVTFGLMYGE 105

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
              +F   A    + +     L +   A +         + + +     A  D +I    
Sbjct: 106 DPNSF---AGKNNMPIEESEQLFEDYYAGKPK------IKELIDIAQSSATRDGYIDVPG 156

Query: 504 ERVKKAWRQKHSRVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
              ++      S   +  N  L QA    ++ G A + +K       Y +    +  +M+
Sbjct: 157 SGFRRNLEDVWSADFKTKNGALRQALNTMVQGGSAYLTQKALITINQYFRAYDIDAYIMV 216

Query: 563 PSGRSLV 569
               S+V
Sbjct: 217 TVHDSIV 223


>gi|237651592|ref|YP_002899062.1| DNA polymerase [Roseophage DSS3P2]
 gi|220898062|gb|ACL81320.1| N4 DNA pol-like protein [Silicibacter phage DSS3phi2]
          Length = 876

 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 97/644 (15%), Positives = 191/644 (29%), Gaps = 122/644 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL-- 61
           L  D E  S        +  Y   +  I F +   +      D         VL++AL  
Sbjct: 182 LSCDIEGFS--------LKHYDAGIGTITFCWDQHNGIAFEVDNTKTKAEDHVLRQALKT 233

Query: 62  -----ENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTLVL---- 99
                  T   ++ HN  ++  VL                  LD+ +  W CT ++    
Sbjct: 234 FFYRYRATGRRMIYHNICYDAYVLIYQLFMDHILDQEGFLEGLDVMLENWECTQLITYLA 293

Query: 100 -----ARSNGLPSALKAVGEALKLSSQKMEEGKELIARF----CKGETHECLYDRNKPNH 150
                    GL +  +       +   +     EL          G +   +Y+++    
Sbjct: 294 TNSCAGNELGLKAQAQEFAGNYAVEDIQDITQIELPKLLEYNLVDGLSTWFVYNKHYQTM 353

Query: 151 --REAWRLFG---EYCKGDVTVT--------REIFKRLEPLS--SKEQELWYLDQTINDR 195
              + + ++    +    D+            +   +L        E  +W + QT   +
Sbjct: 354 INDQQFEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKLNDQLGAESEHNVWKMLQTKIVQ 413

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLV--SSSRCLEKLKTWLFLE--TGL 249
           G+     L     +  + +          L  T  L+   +     +L+  L+ +   GL
Sbjct: 414 GFV--YQLEENALKKKNEKLKTKVVTRVDLGSTQDLMVAFNPGSAPQLQRLLYSDEFLGL 471

Query: 250 HLEDLTET----TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNS 300
            + DLT++    T    L     + ++ +  +  N  +    SA+     L   ++A   
Sbjct: 472 PVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTFLPAFLKACPG 531

Query: 301 DGRLRGTL-QFL-GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                     F  G + +GR S      QN+P                    ++      
Sbjct: 532 PDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIP-------------------SSAGGPLKS 572

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
            ++  ++ C  A  G   V  D   +E R+ A    +  KLK +  G D +       F 
Sbjct: 573 RLAKLIKKCFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFG 632

Query: 419 -----VAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
                + P+ V          K  R   K    AL YQG    F  +    G +      
Sbjct: 633 DQMPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQG---TFHTLMVNCGFSKEKAQD 689

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
           +        +++          E   E A  D +I  A        R +   +++     
Sbjct: 690 IEN------KYKKMYKVSIEYVEKKLEQATRDGYITVAFG-----LRVRTPLLAQTILGT 738

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           ++  ++    G+       +   ++  +     +  +  S   L
Sbjct: 739 NKTPKEAAAEGRTAGNAMGQSFCMLNSRAASEFMKKVRASKHKL 782


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 99/499 (19%), Positives = 174/499 (34%), Gaps = 59/499 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAH 71
            D+   G+ +  +  CV   A+   D  V   L D    P   + ++E  ++ +V I   
Sbjct: 39  TDIETPGLLRQFDINCVTA-AWRHGDGRVHSVLLDPDRTPHHDEAVREIYDSAEVII-LQ 96

Query: 72  NSYFERTVLKACFNLDIP---IHRWICTLVLARSNGLPSALKAVGEAL---KLSSQKMEE 125
           N  F+   L     L  P     +++ TL+ AR     S +      L    L  +++  
Sbjct: 97  NGVFDLPALLHS-GLITPEQIREKFLDTLLPARMIDTSSPMARSLTMLVKRHLGVEELTG 155

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
           G EL  +    +  +  Y+    +      ++      D  +T  ++    P+  +    
Sbjct: 156 GIELAFKAAGYKRQQDGYEGMDIDSP----IYRLGAMADTVMTLALW----PVLYEAAID 207

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             LD     RG CVD A       +V+   T+L      +  G+      LE+    +  
Sbjct: 208 QQLDHPFQSRG-CVDRA---EAQYVVERMITELRIVGTRVAKGVNVDRGALERYADSVED 263

Query: 246 ET----------GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           +           GL      E+     L+S   L     +  + +++A++  +  L    
Sbjct: 264 DRRRATATLAAVGLEGGKGKESKIIEYLASVGHLPADWPRTPSGKLKATKDLMEGLG--- 320

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH-LPTSITSDP 354
           + + +  R    +  L    TG         Q      R H ++             S P
Sbjct: 321 DPIATAQRTLAHMDQL----TGYLEKVEAQSQV---TGRCHPQISVAGAAATGRMSISSP 373

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
            PLQ  S   R+ + A EG+++   D + IE   +A +AG+   L  F  G DLY     
Sbjct: 374 -PLQQFSGPARAILTADEGQRMWSVDWSQIEPVTMALLAGDSEFLAPFAAGADLYE---- 428

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
                   +    +R + KV+ L   Y  GA    K+A T G    +   L +   A   
Sbjct: 429 -----PIMRAAGIERKVAKVLLLQTMYGSGA---AKIAETIGHTPESAVQLRRQMFAA-- 478

Query: 475 WEDAENFCRWMQENHPEHA 493
             ++  F   +Q     H 
Sbjct: 479 MPESSKFMSRVQTLGDTHG 497



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDTDEFNASMLYHL 650
           +G K T  I Q  + DIL E ++   + G    ++  +HDEI+   P      A  +  +
Sbjct: 513 FGYKATNYICQGTALDILTETIIELDRRGLGDSMLWWMHDEILVSGPPE---VAREVQEV 569

Query: 651 MTSNPSWAKGLP 662
           M   P + +  P
Sbjct: 570 MEIVPDFMRTWP 581


>gi|60117328|gb|AAX14432.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 276

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 81/258 (31%), Gaps = 46/258 (17%)

Query: 170 EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            I ++L+    +E+           L  +   +   G  +++     L+         L+
Sbjct: 43  AIHEKLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLE 102

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGL--HLEDLTETTCQRVLSSNKKLTPQAIQVF 277
            E+ +L  G   +    ++L   LF + GL    +     +        + L  + +++ 
Sbjct: 103 DEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIA 161

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +                             L +   S+           Q  P   R H 
Sbjct: 162 SK---------------------------ILNWRHLSKLKGTYTDALIKQVDPLDGRIHT 194

Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                 T      +S+P+   I       + +R   IA +G K++ AD + IE + L   
Sbjct: 195 SFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELKPLGTR 254

Query: 393 AG-EQWKLKAFETGEDLY 409
                   K F T ++++
Sbjct: 255 CQRCHHLKKLFATKQEIH 272


>gi|237651508|ref|YP_002898979.1| DNA polymerase [Roseophage EE36P1]
 gi|220898140|gb|ACL81397.1| N4 DNA pol-like protein [Sulfitobacter phage EE36phi1]
          Length = 876

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 93/585 (15%), Positives = 172/585 (29%), Gaps = 117/585 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL-- 61
           L  D E  S        +  Y   +  I F +   +      D         VL++AL  
Sbjct: 182 LTCDIEGFS--------LKHYDAGIGTITFCWDQHNGIAFEVDNTQTKAEDHVLRQALKT 233

Query: 62  -----ENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTLVL---- 99
                  T    + HN  ++  VL                  LD+ +  W CT ++    
Sbjct: 234 FFYRYRATGRRTIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENWECTQLITYLA 293

Query: 100 -----ARSNGLPSALKAVGEALKLSSQKMEEGKELIARF----CKGETHECLYDRNKPNH 150
                    GL +  +       +   +     EL          G +   +Y+++    
Sbjct: 294 TNSCAGNELGLKAQAQEFAGNYAVEDIQDITQIELAKLLEYNLVDGLSTWYVYNKHYQTM 353

Query: 151 --REAWRLFG---EYCKGDVTVT--------REIFKRLEPLS--SKEQELWYLDQTINDR 195
              + + ++    +    D+            +   +L        E  +W + QT   +
Sbjct: 354 INDQQYEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKLNNQLGAESEHNVWKMMQTKIVQ 413

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLV--SSSRCLEKLKTWLFLE--TGL 249
           G+     L     +  + +          L  T  L+   +     +L+  L+ +   GL
Sbjct: 414 GFV--YQLEEDALKKKNEKLKTKVVTRADLGSTQDLMVAFNPGSAPQLQRLLYSDEFLGL 471

Query: 250 HLEDLTET----TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNS 300
            + DLT++    T    L     + ++ +  +  N  +    SA+     L   ++A   
Sbjct: 472 PVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTFLPAFLKACPG 531

Query: 301 DGRLRGTL-QFL-GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
                     F  G + +GR S      QN+P                    ++      
Sbjct: 532 PDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIP-------------------SSAGGPLKS 572

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
            ++  ++ C  A  G   V  D   +E R+ A    +  KLK +  G D +       F 
Sbjct: 573 RLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFG 632

Query: 419 -----VAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
                + P+ V          K  R   K    AL YQG    F  +    G +      
Sbjct: 633 DQMPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQG---TFHTLMVNCGFSKEKAQD 689

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           +        +++          E   E A  D +I  A     + 
Sbjct: 690 IEN------KYKKMYKVSIEFVEKKLEQATRDGYITVAFGLRVRT 728


>gi|258539932|ref|YP_003174431.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
 gi|257151608|emb|CAR90580.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
          Length = 690

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 107/345 (31%), Gaps = 39/345 (11%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK--------ACFNLDIPIHRWICTLVL 99
             +          L   +V     +S  + TV              L +P       ++L
Sbjct: 345 TKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNIVAAHRLGLHLP--DIAFDVLL 402

Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           A     P   +      A       +   +++  +  K         R  P  +  +  F
Sbjct: 403 ASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAK---------RQVPEDKLLFEQF 453

Query: 158 GE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  +    D+T      ++ +  +  E  L  +   +  +G  ++      +    
Sbjct: 454 ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEF 513

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKK 268
                 L++++     G+  +    ++L   LF +  L +   T+T       VL+  K 
Sbjct: 514 SQSIKVLEEKIYGEA-GVKFNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKS 572

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
            +P    + + R   ++     +  L++A   D ++         ++TGR S      QN
Sbjct: 573 ASPIVQDILDYRG-WAKLNSTYVVGLLKAQMPDHKIHTRY-LQTLTQTGRLSSVDPNMQN 630

Query: 329 LPRPS------RSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
           +P         +    L +I   L  +I         IS  +R C
Sbjct: 631 IPARDEGKIIRKPLSLLIRIGRFLARNIRKSNYACYRISRVMRIC 675


>gi|313631120|gb|EFR98660.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 80

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 45/76 (59%)

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
           +   ++S  +R+  IA +G    + D + IEARV+AW+AGEQW+L  F +   +Y  + +
Sbjct: 5   NVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASAS 64

Query: 415 RSFNVAPAQVTKDQRA 430
           + F++   +V K+ R 
Sbjct: 65  QMFHIPIEEVDKNLRQ 80


>gi|269964624|ref|ZP_06178862.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830523|gb|EEZ84744.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 676

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 85/521 (16%), Positives = 164/521 (31%), Gaps = 96/521 (18%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA 100
           + +  +  + P+   ++L +  VT V H++  +   +   ++L +   R+    C    A
Sbjct: 109 VINVANPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI---WSLGLNESRYWWDTCIAEKA 163

Query: 101 RSNG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           R  G      + + V    K+  QK    +  +                  +  +     
Sbjct: 164 RYLGQHNNAKSTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSGLASSAKLLMGS 223

Query: 158 GEYC----KGDVTVTREIFKRLEPL-----------------SSKEQELWYLDQTINDRG 196
            + C       +  T ++   +  L                  S E      +  I   G
Sbjct: 224 EQDCPSFSALQIEQTSQLSITVAKLYLTQSQSCLMFGIHQHLISIEMPWVVTNAAIEWNG 283

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--HLEDL 254
           + V       + +  + + +   Q L  L    +++     + K  LF   GL  H +D 
Sbjct: 284 FKVCRDKCRQILEACERKLSLYSQGLAQL---GMTNPNSQHQ-KQVLFASLGLLHHFKDG 339

Query: 255 TETTCQ-RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + + Q  +LS N  L P    +                T ++++  D            
Sbjct: 340 DDYSFQREMLSKNYALHPAVAFLAKY-------------THIDSVYKD------------ 374

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
                    +  P  +    R H E  Q+        T  P+ L  +   +R  V+A +G
Sbjct: 375 --------VILQPGIVGSDGRVHSEQKQLTAATGRQATVAPNIL-GLPAVLRPLVVAQDG 425

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF--NVAPAQVT------ 425
             +   DLA IE  + A + G+   +K +  G DLY       F   + P   T      
Sbjct: 426 YVIGEVDLAQIEVAIAAGVYGDSNLVKMYNQG-DLYTAMAQEFFCEELEPEYSTCDSAVF 484

Query: 426 ----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                ++RAI K   L L Y   +      A    +++N    L+        + + +  
Sbjct: 485 KEKYPEKRAIMKQCTLGLIYGITSFGI---AKKLNISVNKATELMD--KFLSMFPELQKA 539

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK-KAWRQKHSRVSELW 521
              M    P++      + TA    + +    K     + W
Sbjct: 540 IDKM----PQYGALRGHVSTATGLHRYRQLDAKRGHTEKNW 576


>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 686

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 35/269 (13%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114
            LK  LE+ DV  +  N  ++ T+     N  + +       +L + +            
Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTI---FANHGVQVEGVAFDTMLESYTLNSTGRHNMDEL 490

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +    K  E +E+  +     T + +          A  +  +Y   D  VT ++ + 
Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASQYAAEDADVTMKLHQV 540

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   K           E  L  +   I   G  +D       +  ++   ++L+Q + 
Sbjct: 541 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVH 600

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK---KLTPQAIQV 276
           S   G + +    ++L+  LF + GL +   T      T + VL        L P+ +  
Sbjct: 601 SEA-GEIFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
                +   +   KL  ++      GR+ 
Sbjct: 660 HRGLSKLKSTYTDKLPLMIN--QKTGRVH 686


>gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 1097

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 84/530 (15%), Positives = 163/530 (30%), Gaps = 74/530 (13%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGLPSALK-AVG 113
           K  LE  D+ +  HN+ F+  V+       N+ I         + A+    P  LK  + 
Sbjct: 274 KPLLEKKDIIV--HNASFDWKVIYIYGIVLNVVIDTFAVFSLTLNAKYQ-TPVGLKHLIS 330

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             LK  S ++++        CK        D+N  +  +   L   Y   D   T  ++ 
Sbjct: 331 LLLKRDSLELDD-------LCKNGDF-GSIDQNFADLPK--ELVRLYACADADNTLALYH 380

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            +  L +   E W                      ++V  E         S  +G   + 
Sbjct: 381 YM--LETNMLENW-------------------GATKVVQFESIFACAIGYSEFHGQFVNV 419

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------------IQVFNNRM 281
              ++L   +  +     E       ++V        PQ+                  ++
Sbjct: 420 NETDQLVQDIDRDLQ-EAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKL 478

Query: 282 RASRSAVLK-LNTLVEAMNSDGRLRGTL-----QFLGASRTGRWSGCVFPPQNLPRPSRS 335
               +A  K L  L +  N D   +        +F   +   +      P    P     
Sbjct: 479 DGKLTADKKALKNLSKMTNPDDTPKYPFVNYFQEFNEVNTLRKNFSKNLPEFCTP-DGFM 537

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              + Q +        S P+  Q  +D V+  +    G  +   D + IE RV+A M+ +
Sbjct: 538 FSGVKQFL-KTGRVSISKPNY-QSYNDTVKKYIKPRPGFWMGDMDYSSIEYRVIASMSKQ 595

Query: 396 QWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK--AFQKMA 452
              ++AF+    D +    +  + +    V+K  R   K     + +  G +        
Sbjct: 596 LSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAFNFGIPFGMGNEKLGMTIFG 655

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             +  N      L       E +   ++  R    N    A++  +  T   R     R+
Sbjct: 656 KVSKENTRKATAL------RERYFKGQDNVREFFVNAQRDAVKYGYTETHFGR-----RR 704

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +++ +     + +        G A    K+  V L     ++  L  +L
Sbjct: 705 YYNKETTSVGSIKRQGGNQRIQGTAADIYKQAVVRLFLRIINEGWLDKVL 754


>gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 1015

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 84/530 (15%), Positives = 163/530 (30%), Gaps = 74/530 (13%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGLPSALK-AVG 113
           K  LE  D+ +  HN+ F+  V+       N+ I         + A+    P  LK  + 
Sbjct: 192 KPLLEKKDIIV--HNASFDWKVIYIYGIVLNVVIDTFAVFSLTLNAKYQ-TPVGLKHLIS 248

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             LK  S ++++        CK        D+N  +  +   L   Y   D   T  ++ 
Sbjct: 249 LLLKRDSLELDD-------LCKNGDF-GSIDQNFADLPK--ELVRLYACADADNTLALYH 298

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            +  L +   E W                      ++V  E         S  +G   + 
Sbjct: 299 YM--LETNMLENW-------------------GATKVVQFESIFACAIGYSEFHGQFVNV 337

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------------IQVFNNRM 281
              ++L   +  +     E       ++V        PQ+                  ++
Sbjct: 338 NETDQLVQDIDRDLQ-EAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKL 396

Query: 282 RASRSAVLK-LNTLVEAMNSDGRLRGTL-----QFLGASRTGRWSGCVFPPQNLPRPSRS 335
               +A  K L  L +  N D   +        +F   +   +      P    P     
Sbjct: 397 DGKLTADKKALKNLSKMTNPDDTPKYPFVNYFQEFNEVNTLRKNFSKNLPEFCTP-DGFM 455

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              + Q +        S P+  Q  +D V+  +    G  +   D + IE RV+A M+ +
Sbjct: 456 FSGVKQFL-KTGRVSISKPNY-QSYNDTVKKYIKPRPGFWMGDMDYSSIEYRVIASMSKQ 513

Query: 396 QWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK--AFQKMA 452
              ++AF+    D +    +  + +    V+K  R   K     + +  G +        
Sbjct: 514 LSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAFNFGIPFGMGNEKLGMTIFG 573

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             +  N      L       E +   ++  R    N    A++  +  T   R     R+
Sbjct: 574 KVSKENTRKATAL------RERYFKGQDNVREFFVNAQRDAVKYGYTETHFGR-----RR 622

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +++ +     + +        G A    K+  V L     ++  L  +L
Sbjct: 623 YYNKETTSVGSIKRQGGNQRIQGTAADIYKQAVVRLFLRIINEGWLDKVL 672


>gi|256081122|ref|XP_002576822.1| DNA polymerase I [Schistosoma mansoni]
 gi|238662107|emb|CAZ33059.1| DNA polymerase I, putative [Schistosoma mansoni]
          Length = 787

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 81/540 (15%), Positives = 153/540 (28%), Gaps = 128/540 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E     L   +   G+ +++   +  +  +     +L+     L  G        +
Sbjct: 285 LDVIELPCQSLLARMESNGFILNLDDLNKCHDSLLKACKQLESVAYRLA-GQPFPMDSPK 343

Query: 238 KLKTWLFLET------------------------GLHLEDLTETTCQRVLSSNKKLTPQA 273
           ++   LF                           G +  +        +LS    L P  
Sbjct: 344 EISKVLFKWLHLPQITDPNDLIMNRKRSQSYLLNGRNRSNHLPKATNTLLSKLTNLHPLP 403

Query: 274 IQVFNNRMRA--------SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             +   R           S  +  +L  +    +   R+  T     A  TGR    +  
Sbjct: 404 AVIMEWRHINGILEKIFNSLVSTCRLIYISSTGDQPLRISPTYDVYTA--TGRIISIMPN 461

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPL-------QIISD--------CVRSCVIA 370
            Q++P+            +    +   + +         QI+S+          R    A
Sbjct: 462 LQSVPKDIVIDWSKLHYKSSTVDNNCLNNNSEKWTSPFDQILSELPKSIETIRPRCAFHA 521

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQR 429
             G  L+  D   +E R+LA+ + +   LK     E    T  A   N+  + QVT  QR
Sbjct: 522 PVGGLLISGDFCQLELRLLAYFSKDVELLKLLSVVEHASQTLAAHWLNIPHSNQVTDVQR 581

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +  A+ Y  G+   Q +AS   ++                               
Sbjct: 582 QQAKQLCYAILYGMGS---QTLASQLNVSQQNAQ-------------------------- 612

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                          ++  ++   +  V +    +  A       G+             
Sbjct: 613 ---------------KLIDSFLNTYPGVQKF---IKTAVLTAHREGQI------------ 642

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG-----GKLTENIVQA 604
              K  N  I +LP   S    D G         +++      +      G+    I+Q 
Sbjct: 643 ---KTLNGHIRLLPVLNSKTVFDSGTPYELNCNWSKKYDLRNHFAVIKAEGQAVNIIIQG 699

Query: 605 VSRDILAEGMMNATKA--------GYDIVLTVHDEIVCET-PDTDEFNASMLYHL-MTSN 654
            + +I    M+   +A           +VL  HDE++ E  P++       L    M++ 
Sbjct: 700 SASEIAKIAMLAVDEAIHSSNIPGNAHLVLHEHDELIYEVFPESSAKQFGELIRQTMSNT 759


>gi|308516943|emb|CBW47048.1| N4 DNA polymerase-like protein [Roseovarius sp. 217 phage 1]
          Length = 874

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/418 (14%), Positives = 124/418 (29%), Gaps = 62/418 (14%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--SSSRCLE 237
             E  +W + QT   +G+   +       +   ++   + ++   LT  L    +     
Sbjct: 396 ESEHNIWKMMQTKIVQGFQYQLEEEALAKKNAKLKTKTVTRKDLGLTKDLEVAYNPGSAP 455

Query: 238 KLKTWLFLE--TGLHLEDLTET----TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAV- 288
           +L+  L+ +   GL + DLT++    T    L     + ++ +        +    SA+ 
Sbjct: 456 QLQRLLYSKEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKDFLKILLEYKASAII 515

Query: 289 --LKLNTLVEAMNSDGRLRGTL-QFL-GASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
               L   ++A             F  G + +GR S      QN+P              
Sbjct: 516 LSTFLPAFLKAHPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIP-------------- 561

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 ++       ++  ++ C  A  G   V  D   +E R+ A    +  KLK +  
Sbjct: 562 -----SSAGGPLKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTD 616

Query: 405 GEDLYVTTYARSFNVAPAQVTKD--------------QRAIGKVMELALGYQGGAKAFQK 450
           G D +       F      +                  R   K    AL YQG    +  
Sbjct: 617 GYDGHSLRAYGYFGDQMPDIDPSSVESINSIGKKYKPLRQESKAPTFALTYQG---TYHT 673

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +    G +      +        ++    +          E A  D +I  A        
Sbjct: 674 LMQNCGFSKEKAQMIEN------KYRQMYSVSIDYVNEKLEQATHDGYITVAFG-----L 722

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           R +   + +     ++  ++    G+       +   ++  +     +  +  S   L
Sbjct: 723 RVRTPLLVQTILGTNKTPKEAAAEGRTAGNAMGQSYCMLNSRAASAFMKKVRRSSHRL 780


>gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 835

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/574 (14%), Positives = 149/574 (25%), Gaps = 139/574 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+   G+   +E   +  FA+           C         LK   E+    ++ HN+ 
Sbjct: 184 DIETTGLELGSELYSI-AFAWSQHKG------CAFKVTDKVQLKRFFESYSGVLIFHNAT 236

Query: 75  FER-TVLKACF------------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           F+   ++  CF             L         T ++A      +     G  L L   
Sbjct: 237 FDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNNTQGNILGL--- 289

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--LS 179
                KEL   F      +  +  N P          EY   D   T  +F + +P  LS
Sbjct: 290 -----KELSHEFVGNYAIDVKHVLNHP-----LATVLEYNLKDTLATYWVFNKYKPKMLS 339

Query: 180 SKEQELWYLDQ--------TINDRG--------YCVDVALAHTLNQIVDV-----ERTKL 218
             +  ++             I   G          V   L +  N  ++          +
Sbjct: 340 DNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVIVKKQLQNQANDALEQIYASEHVKAV 399

Query: 219 DQELESLTYGLVSS------------------SRCLEKLKTWLFLETGLHL----EDLTE 256
             EL++     ++S                        L   L+   GL +     +   
Sbjct: 400 THELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSTAHLAILLYDYLGLPILDYTPNKQP 459

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL-----NTLVEAMNSDGRLRGTLQFL 311
                 +    + T     +         + V K+         +A   D        +L
Sbjct: 460 AVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDD-----WHYL 514

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-----VRS 366
                                   H   +   T      +S+P+  Q+ S       ++ 
Sbjct: 515 ------------------------HGSFNLGGTLSNRLSSSNPNLQQLPSGSTYGKTIKQ 550

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT- 425
           C  A +    V AD   +E R+   +  +  K K +  G D +       F      +  
Sbjct: 551 CFQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFANQMPDIIN 610

Query: 426 ------------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                        + R   K    AL Y G    +  +    G + +    +        
Sbjct: 611 TKESINSIKHKYPELRQESKAPSFALQYGG---QYFTLMKNCGFSESKAKEIETNYHKMY 667

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
           E  DA  + +   E   +    D+  G       
Sbjct: 668 EVSDA--WTQRKLEQCAKQGYIDVAFGLRIRTPV 699


>gi|66812036|ref|XP_640197.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
 gi|60468189|gb|EAL66199.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
          Length = 1459

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/430 (15%), Positives = 141/430 (32%), Gaps = 89/430 (20%)

Query: 181  KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR------ 234
             E  L  +   +   G C ++       + +     +L + +          +       
Sbjct: 935  NEMRLIPILSKMELEGICCNIGKLDHYLKRISEFTKELKESVNKDDGDDDDDNNFKRFEE 994

Query: 235  ----CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS- 286
                  +++  WL  + G+ ++  ++ T    +R+  +N+K+     +V   R  ++   
Sbjct: 995  FKLGSFKEVSGWLN-QHGVDIKSTSKETLIQQKRLNINNQKVVTFIDRVLFYRRLSALKG 1053

Query: 287  -----AVLKLNTLVEAMNSDGRLRGTLQF-----LGASRTGRWSGCVFPPQNLPRPS--- 333
                  +LK         +      T Q         + TGR S      Q +PR S   
Sbjct: 1054 HYIEPYLLKYTNTTTTTKTRSNTNSTFQISCQWNQTGTATGRLSSSEPNLQTIPRTSTSL 1113

Query: 334  -------------------RSHEELDQIITHLPTSITSDPDPLQII-------------- 360
                                  ++LD +  +     + DPD +Q +              
Sbjct: 1114 INPTTATTTTTTTSTNNDLNDLDDLDDLDYNGNDGGSLDPDFIQALQDDDDNNNINNNNN 1173

Query: 361  ------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                     +R+  I+ EG  LVV D   +E R++A  + ++  ++ FE+G D+      
Sbjct: 1174 NDDDDNIINIRNSFISREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFESGSDVINMMAV 1233

Query: 415  RSF---NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
            R     ++    V K+ R   K +   + Y   A +  K+     LN+  +       + 
Sbjct: 1234 RLSDRDDLDVNNVDKETRDRVKRIVYGILYGIQAFSLGKL-----LNIPIYKASDHIKNF 1288

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +++   NF +  + N  +  +           + K  R+  S+         +A    
Sbjct: 1289 YFKFDGVSNFIQITKSNAEKSHV--------VPTLGKRIRKLDSKFKT------KAVNSI 1334

Query: 532  IENGKAIIAR 541
            I+   A I +
Sbjct: 1335 IQGSSADIIK 1344



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 27/119 (22%)

Query: 539  IARKRRDVPLVYMKKDKNNLILMLP---SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
            I +    +   Y K D  +  + +    + +S V   +G     L++  +          
Sbjct: 1278 IYKASDHIKNFYFKFDGVSNFIQITKSNAEKSHVVPTLGKRIRKLDSKFKT--------- 1328

Query: 596  KLTENIVQAVSRDILAEGMMNATKAGY---------------DIVLTVHDEIVCETPDT 639
            K   +I+Q  S DI+   M+      +                 +L VHDE+V E PD 
Sbjct: 1329 KAVNSIIQGSSADIIKLAMITIMNELFLPLLNLNSNNNNKIPRFLLQVHDELVFEVPDE 1387


>gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65]
 gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65]
          Length = 988

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 91/654 (13%), Positives = 183/654 (27%), Gaps = 167/654 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------Q 55
             + IDFET +              +  + + +  + DH   +         P      Q
Sbjct: 198 KIIGIDFETNTLESWRT--------NARMTMMSISWKDHQGVVIPIDKTGFQPFSEEEKQ 249

Query: 56  VLKE----ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------ 105
            +K       ++  +  V HN  F+ T+LK    LD  I        +    G       
Sbjct: 250 DIKHNVNQIFKSDKIWKVLHNGKFDITMLKDVNGLDRSIK--CIDTEVMYYVGFSQAKKV 307

Query: 106 PSALKAVGEA---LKLSSQKMEEGK---------------------ELIARFCKGETHEC 141
              LK +  A   +    Q +EE K                      L       +  + 
Sbjct: 308 KKGLKQIARAFTDMGGYEQPLEEFKNEYLEKHYKNWYNAEIEKYRKALELEGKDPDKAKV 367

Query: 142 LYDRNKPNHRE-----------AWRLFGEYCKGDVTVTREIFKRLEPLSSKE--QELWYL 188
                K    E              +   Y   D  VT  +F ++     K         
Sbjct: 368 SKKDYKAPTNEIDGGKFNYDWIDMEVQFPYAAADADVTLRLFNKMVGRIKKNRAWVNLVF 427

Query: 189 DQ---------TINDRGYCVDVALAHTL---------------------NQIVDVERTKL 218
           +          TI   G  +D+     L                      ++++ ER   
Sbjct: 428 NIFPRLNDALTTIEHNGIKLDMERNRELHDKYVKHRDDMKNEILSTIPEIKMIEKERLNF 487

Query: 219 DQELESL----------------------TYGLVSSSRC-----LEKLKTWLFLETGLHL 251
             E E +                        G               +K  L+   G  L
Sbjct: 488 AMEREQIKKIKPADRTKEQKQKFKDYAKNCTGKDGVPNYKFKFTPNDMKRLLYDVLGYEL 547

Query: 252 E-----------DLTETTCQRVLSSNKKLTP----QAIQVFNNRMRASRSAVLKLNTLVE 296
                       ++T  +     ++ + L      + I +++   +A  +    ++ L E
Sbjct: 548 PQEPPYVTGNPKNITWKSYSVGKAAQEYLEETYKTKFIDLYSKYSKAETALGSFIDKLPE 607

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
             + D  ++ +        +   S   F  QN  R + +                +D + 
Sbjct: 608 VRDKDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDN---------------PNDFNY 652

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +    RS     +G  L+  D + +E   +A ++ ++   +A    +D++    +  
Sbjct: 653 SYGVKSMYRSRF---KGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLG 709

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F+V   +VTK+ R   K +   + Y  G    + +A   G++      +     A     
Sbjct: 710 FHVPYDEVTKNLRTSAKKVSFGIPYSMG---IKTLAKDLGVDEKEAQRIYDAILATMPQ- 765

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                 +    +  E A    +  T        +R+  S V  +  ++    ++
Sbjct: 766 -----VKQAMADSQEFAARYKYAETL-----NGFRRDLSNVDSILKDVRAKAKR 809


>gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 835

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 83/574 (14%), Positives = 155/574 (27%), Gaps = 139/574 (24%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+   G+   +E   +  FA+   +       C         LK   E+    ++ HN+ 
Sbjct: 184 DIETTGLELGSELYSI-AFAWSQHEG------CAFKVTDKVQLKRFFESYSGVLIFHNAT 236

Query: 75  FER-TVLKACF------------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           F+   ++  CF             L         T ++A      +     G  L L   
Sbjct: 237 FDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNNTQGNILGL--- 289

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--LS 179
                KEL   F      +  +  N P          EY   D   T  +F + +P  LS
Sbjct: 290 -----KELSHEFVGNYAIDVKHVLNHP-----LATVLEYNLKDTLGTYWVFNKYKPKMLS 339

Query: 180 SKEQELWYLDQ--------TINDRG--------YCVDVALAHTLNQIVDV-----ERTKL 218
             +  ++             I   G          V   L +  N  ++          +
Sbjct: 340 DNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVVVKKQLQNQANDALEQIYASEHVKAV 399

Query: 219 DQELESLTYGLVSS------------------SRCLEKLKTWLFLETGLHL----EDLTE 256
             EL++     ++S                     +  L   L+   GL +     +   
Sbjct: 400 THELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSIAHLAILLYDYLGLPILDYTPNKQP 459

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL-----NTLVEAMNSDGRLRGTLQFL 311
                 +    + T     +         + V K+         +A   D        +L
Sbjct: 460 AVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDD-----WHYL 514

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-----VRS 366
                                   H   +   T      +S+P+  Q+ S       ++ 
Sbjct: 515 ------------------------HGSFNLGGTLSNRLSSSNPNLQQLPSGSTFGKTIKQ 550

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPAQVT 425
           C  A +    V AD   +E R+   +  +  K K +  G D +       F N  P  + 
Sbjct: 551 CFQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFVNQMPDIIN 610

Query: 426 ------------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                        + R   K    AL Y G    +  +    G + +    +    +  +
Sbjct: 611 TKESINSIKHKYPELRQESKAPSFALQYGG---QYFTLMKNCGFSESKAKEI--ETNYHK 665

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            +E +  + +   E   +    D+  G       
Sbjct: 666 MYEVSNAWTQRKLEQCAKQGYIDVAFGLRIRTPV 699


>gi|315181204|gb|ADT88118.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 676

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 83/522 (15%), Positives = 155/522 (29%), Gaps = 98/522 (18%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARS 102
           + +     + P+   ++L +  VT V H++  +   +     L+ P + W  C    AR 
Sbjct: 109 VINVASPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI-WSLGLNEPRYWWDTCIAEKARY 165

Query: 103 NG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR---- 155
            G        + V    K+  QK    +  +               +  +  +       
Sbjct: 166 LGQHNNAKPTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSDLASSAKLLMGSEQ 225

Query: 156 ---LFGEYCKGDVT-----------------VTREIFKRLEPLSSKEQELWYLDQTINDR 195
               F E+     +                 +   I + L    S E      +  I   
Sbjct: 226 DCPSFSEFQIERTSQLSITVAKLYLTQSQSCLMFGIHQHL---ISIEMPWVVTNAAIEWN 282

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G+ V       + +  + +     QEL  L    +++     + K  LF   GL      
Sbjct: 283 GFKVCRDKCSQILEACERKLNLYSQELAQL---GMTNPNSQHQ-KQALFASLGLLHHFKD 338

Query: 256 ETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                  + +LS N  L P    +                T ++++  D           
Sbjct: 339 GEDYSFQREMLSKNYALHPAVAFLAKY-------------THIDSVYKD----------- 374

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
                     +  P  +    R H E  Q+        T  P+ L  +   +R  V+A +
Sbjct: 375 ---------VILQPGIVGSDGRVHSEQKQLTAATGRQATVAPNIL-GLPAVLRPLVVAQD 424

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA---------- 422
           G  +   DLA IE  + A + G+   +K +  G DLY       F               
Sbjct: 425 GYAIGEVDLAQIEVAIAAGVYGDSNLVKMYNQG-DLYTAMAQEFFCDELESEYRICDSST 483

Query: 423 --QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +   ++RAI K   L L Y   +      A    +++N    L+        + + + 
Sbjct: 484 FKEKYPEKRAIMKQCTLGLIYGITSFGI---AKKLNISVNKATELMD--KFLSMFPELQK 538

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVK-KAWRQKHSRVSELW 521
               M    P++      + TA    + +    K     + W
Sbjct: 539 AIEKM----PQYGALRGHVSTATGLHRYRQLDAKRGHTEKNW 576


>gi|77918409|ref|YP_356224.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544492|gb|ABA88054.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelobacter carbinolicus DSM 2380]
          Length = 593

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 72/473 (15%), Positives = 144/473 (30%), Gaps = 72/473 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-IC 95
           F    V +W          +      + +   VA+ +  E T  +A     +P +   + 
Sbjct: 37  FSGKTVRVW-IEKGEQP--LAAPFPTDKNTLFVAYLASAEMTCFQA-LGWKLPAYVIDLY 92

Query: 96  TLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
                 +NG  LP     +G       + ++  ++        +    L  R  P   + 
Sbjct: 93  AEFCLLTNGFFLPRGKGLLGALAYFGEEILDAVEK--------KDMRELAQRGGPYTEDE 144

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW-----YLDQTINDRGYCVDVALAHTLN 208
                +YC+ DV     ++K + P    ++ L           I   G  +D      L 
Sbjct: 145 KTDLLDYCQRDVLALERLWKHMVPHLDGDRSLLRGEYMKAVAKIEMTGIPIDTLALADLR 204

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSS 265
           +  +V +T L +EL    YG+  + +    L        G+           T       
Sbjct: 205 ENWEVIKTSLIEEL-GAPYGVYKNGKFKTDLFVQYLKNKGIPWPLTPTRKPKTDADTFKE 263

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             K  P+        ++  +  + KL      + +DGR R      G+            
Sbjct: 264 MAKCYPELKP-----LKELQQLLGKLKLNKLQVGTDGRNRYLSGVFGSK----------- 307

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
                                  +  S+   +  +   +R  V    G  L   D    E
Sbjct: 308 --------------------TGRNQPSNSKCIFGLPSWMRKLVRPGPGNGLAYLDYEQQE 347

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA---PAQVTKDQRAIGKVMELALGYQ 442
             +   ++G++   +A+ +G D Y+    ++         +   D R+  K   L + Y 
Sbjct: 348 FGIAGALSGDEAMRQAYISG-DPYLAFAIQAGAAPRGATKESHGDIRSRFKATALGVQYG 406

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
            G     ++A    ++      L+  +      +    F +W Q+   +  IE
Sbjct: 407 MGQ---DRLAMNLNISKGEAKALLDLHR-----KTYARFWQWQQDIENKALIE 451


>gi|156122484|gb|ABU50233.1| DNA polymerase [Cyanophage S-CBP1]
          Length = 586

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 82/492 (16%), Positives = 151/492 (30%), Gaps = 37/492 (7%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNS 73
           D+   G+   A  +  I      +     ++ D      + + + + LE+ D+  V HN 
Sbjct: 6   DIETDGLYNDASCIHCIGI-HDLNAGETYVFNDVGTQQPITKGI-QLLEDADLI-VGHNI 62

Query: 74  Y-FERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKM-EEGKELI 130
             ++  V+   F      +  + TLVL+R  +     +    +   +  Q       E  
Sbjct: 63  IGYDIPVISKLFPWFSRTNGVLDTLVLSRLYHTDLLDIDQKRKWKHMPLQLYGRHSLEAY 122

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---EQELWY 187
                          +     +    +      DV VTR+++K    +      E  +  
Sbjct: 123 GYRLGEYKGSFGKTADWKEWSQDMEDYM---IQDVNVTRKLWKHFPQIPEWVQLEHRVAQ 179

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +       G+  D   A  L Q +  E   L   L      +       +++   L    
Sbjct: 180 ILTEQEIYGWYFDENAARELAQTLYTELDDLKGVLRKRYPYVAGREFTPKRVNRSLGYVE 239

Query: 248 GLHLEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
           G     L   + T+   +    K L            + +   ++      E      R 
Sbjct: 240 GATCTKLVEFSPTSRDHIAWVMKNLHGWKPDKKTKAGKTAIDEIVLKEIGTEEALQFFRC 299

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC- 363
               + LG    G+ +        L R  R H       T        +P+  Q+ SD  
Sbjct: 300 LEITKQLGMLSEGKNAWLK-----LSRKDRVHHHCSVA-TVTHRCAHRNPNLAQVPSDLN 353

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            R    AS G  +V ADL+GIE R+LA      +  +        D++     +      
Sbjct: 354 FRRLFCASPGHIMVGADLSGIELRMLAHYLARYDDGRYGDILLHGDIHQENADKI----- 408

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                  R + K +  A  Y  G +    ++   GL+ +      K     + + DA   
Sbjct: 409 ----GISRRLVKTVTYAFLYGAGDQKI-GLSYDQGLSPDKAKQ--KGKEIRQAYMDAIPG 461

Query: 482 CRWMQENHPEHA 493
              + E   + A
Sbjct: 462 LEKLVEATKKAA 473


>gi|146087835|ref|XP_001465919.1| DNA polymerase theta (polymerase domain only) [Leishmania infantum
            JPCM5]
 gi|134070020|emb|CAM68350.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
            infantum JPCM5]
          Length = 1169

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 105/406 (25%), Gaps = 117/406 (28%)

Query: 314  SRTGRWSGCVFPPQNLP------------------RPSRSHEELD--------------- 340
              TGR    +   QNLP                  R S   E L                
Sbjct: 810  KSTGRIFSALPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDR 869

Query: 341  -----QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                 +       S    P   +     +R    A  G  L   D   +E R+LA ++G+
Sbjct: 870  WLSLAEAAAVDQASSAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGD 929

Query: 396  QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +      D+     A    +     V   QR   KV+   L Y  G ++       
Sbjct: 930  AALQEHLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKK 989

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                    E F    Q+ H   A        A   + + + + +
Sbjct: 990  IN----------------------EEFATSEQQQHRGEAASSAPAPMAARDLLRRFHRVY 1027

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             R+     E  Q   +                          +  +   SGR  +  +  
Sbjct: 1028 PRIENYLRETRQEALR--------------------------SFAVETLSGRKSLIAEKD 1061

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----------- 623
             NR           R+           VQ  + D+L   M    +  +            
Sbjct: 1062 ANR----------RRQRAIAQA-----VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA 1106

Query: 624  IVLTVHDEIVCETPDTD-EFNASMLYHLM---TSNPSWAKGLPLKA 665
            +V+++HDE+V   P    E     +  ++         A  LP+ A
Sbjct: 1107 LVMSIHDELVYAVPRVAIEEVVRGVQRILEDQARVLRLAVPLPVSA 1152


>gi|322499407|emb|CBZ34480.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1171

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 105/406 (25%), Gaps = 117/406 (28%)

Query: 314  SRTGRWSGCVFPPQNLP------------------RPSRSHEELD--------------- 340
              TGR    +   QNLP                  R S   E L                
Sbjct: 812  KSTGRIFSALPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDR 871

Query: 341  -----QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                 +       S    P   +     +R    A  G  L   D   +E R+LA ++G+
Sbjct: 872  WLSLAEAAAVDQASSVQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGD 931

Query: 396  QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +      D+     A    +     V   QR   KV+   L Y  G ++       
Sbjct: 932  AALQEHLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKK 991

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                    E F    Q+ H   A        A   + + + + +
Sbjct: 992  IN----------------------EEFATSEQQQHRGEAASSAPAPMAARDLLRRFHRVY 1029

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             R+     E  Q   +                          +  +   SGR  +  +  
Sbjct: 1030 PRIENYLRETRQEALR--------------------------SFAVETLSGRKSLIAEKD 1063

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----------- 623
             NR           R+           VQ  + D+L   M    +  +            
Sbjct: 1064 ANR----------RRQRAIAQA-----VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA 1108

Query: 624  IVLTVHDEIVCETPDTD-EFNASMLYHLM---TSNPSWAKGLPLKA 665
            +V+++HDE+V   P    E     +  ++         A  LP+ A
Sbjct: 1109 LVMSIHDELVYAVPRVAIEEVVRGVQRILEDQARVLRLAVPLPVSA 1154


>gi|221057828|ref|XP_002261422.1| DNA polymerase I [Plasmodium knowlesi strain H]
 gi|194247427|emb|CAQ40827.1| DNA polymerase I, putative [Plasmodium knowlesi strain H]
          Length = 1245

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 126/371 (33%), Gaps = 53/371 (14%)

Query: 278  NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                 + +     +  L + +  +  ++      +GAS TGR S      QN+      H
Sbjct: 809  KLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQVGAS-TGRLSCEHPNLQNI------H 861

Query: 337  EELDQIITHLPTSITS------------DPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
                  I+      +S            DPD   +  +        S+G+ L+  D   +
Sbjct: 862  SRFRCAISLKGEDSSSVEVGKDKLTVAEDPDREILTCEMSPHESTPSDGENLITFDYKQM 921

Query: 385  EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
            E  V+A+++ ++  LK  ++G D++V T    FN    QVT + R + K +   + Y   
Sbjct: 922  ELFVMAYLSFDRQLLKMLQSG-DVFVETAKVLFNTT--QVTSELRRMTKTVIYGILYGQT 978

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                  +A +  ++    ++L+  ++  + + +   F    +            +G    
Sbjct: 979  EN---GLARSLLISEGMASNLI--SNFFQVFPNVYRFMEMQKILLKHMNRVYTLVGRK-- 1031

Query: 505  RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                  R     V    N+   +    I+   A I +      L  M   +         
Sbjct: 1032 ------RIIEPTVK---NKYRISMNTPIQGCAADIMKFALLSCLSIMTHGRG-------- 1074

Query: 565  GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                V  + G+     N         +T   +L E  +  VS  +L E           +
Sbjct: 1075 --RQVVSNFGSVHEPHNKYDVHSMGHWTQSARLLE--INNVSAALLEENKPFLEAT--KL 1128

Query: 625  VLTVHDEIVCE 635
            +L VHDE++ E
Sbjct: 1129 ILQVHDELLFE 1139


>gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 221

 Score = 97.5 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 10/171 (5%)

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E R++A ++G++  ++AF +G D +    +  + +   ++T DQR+  K M   L Y  
Sbjct: 1   MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGL 60

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                  +A    ++      L        ++           E+    A E  +  T  
Sbjct: 61  STY---GLAQQLKISPKEAESL------RNQYFATFGKVHEYLESLVSTAREKGYTETIY 111

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            R ++ +    S    + +   +A       G A    K   +      +D
Sbjct: 112 GR-RRYFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRASDSLRD 161


>gi|154338261|ref|XP_001565355.1| DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062404|emb|CAM42265.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 977

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 103/379 (27%), Gaps = 112/379 (29%)

Query: 314 SRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQIISDCV-------- 364
           + TGR    +   QNLP +P R+   +  +      S     D        V        
Sbjct: 613 TSTGRIFSALPNVQNLPKQPPRTAFPIHALSATQDRSSNGGGDESLRPYGYVDSPTEEDV 672

Query: 365 -------------------------------RSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                          R    A  G  LV  D   +E R+LA ++
Sbjct: 673 DRWLSLAEAGVIDQASSAQFLLFPEHPQWTLRHLYCAPPGCVLVSFDFNQLELRLLAHLS 732

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           G+    +   +  D+     A    +     V  +QR   KV+   L Y  G +      
Sbjct: 733 GDSALQEHLSSNVDVLALVTASVLRLPSIDHVRPEQRQAVKVIVYGLLYGMGPELMD--- 789

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                               +  E+     +  Q +    A        +   + + +  
Sbjct: 790 ----------------VRIRKINEEFATAEQQQQHDREGAASSSDPESASARDLLRRFYH 833

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            + RV     E  Q                            +N+L++   SGR  +  +
Sbjct: 834 AYPRVESYLRETRQEA--------------------------QNSLVVETLSGRKTLLAE 867

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--------- 623
              NR           ++           VQ  + D+L   M    +  +          
Sbjct: 868 TDANR----------RKQRAIAQA-----VQGGAADVLHSAMRAVHQQRHSFLPYLPAAP 912

Query: 624 --IVLTVHDEIVCETPDTD 640
             +V+++HDE+V  TP   
Sbjct: 913 LALVMSIHDELVYATPRVA 931


>gi|115754782|ref|XP_790049.2| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
 gi|115960873|ref|XP_001194514.1| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
          Length = 1312

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 106/349 (30%), Gaps = 71/349 (20%)

Query: 228  GLVSSSRCLEKLKTWLFLETGL----HLEDLT-------ETTCQRVLSSNKKLTPQAIQV 276
            G         +L+  LF E  L      + L        ++T + VL   K L P    V
Sbjct: 791  GHPFQITSHIQLRQVLFDELKLDELCPGQKLARTNVQNLKSTSEMVLHKLKDLHPLPELV 850

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRS 335
              +R                                              QN+P +P + 
Sbjct: 851  LTHRQ-------------------------------------------NIQNIPKQPLQV 867

Query: 336  HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
            H++ +  + +  T  ++ P     +    R    + EG   + AD   IE R+LA ++ +
Sbjct: 868  HKDANGSVVNESTVSSTAPATTLWM----REPFFSHEGWSFIAADFQSIELRILAHLSQD 923

Query: 396  QWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
               LK F      D++V        +    V    R   K +  ++ Y  GA+   +  +
Sbjct: 924  AVLLKVFNDAGSTDIFVQLTCEWLGLNLEDVKTGDRERTKRIVYSVIYGVGAERLAETLN 983

Query: 454  TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             T  N   F     T S   +++    F +        H               +     
Sbjct: 984  DTKENAKAF-----TKSFLVKFKGVNTFAQRCISECQRHGHVKTIFHRH-----RLISNI 1033

Query: 514  HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             S+   + +   +     +  G A    K   + ++ +  ++N +   L
Sbjct: 1034 SSQNFHVRSHAERQAVNFVIQGSAADICKLAMIHIMTVLSERNTVRARL 1082



 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 14/79 (17%)

Query: 596  KLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVCETPDTD--EFNASM 646
            +    ++Q  + DI    M++              +++ +HDE++ E  D D  E  A  
Sbjct: 1047 QAVNFVIQGSAADICKLAMIHIMTVLSERNTVRARLLVQIHDELLFEVHDEDINEVKAKK 1106

Query: 647  LYHLMTSNPS-----WAKG 660
                ++   S     W  G
Sbjct: 1107 SCVCLSELESVWGSFWRDG 1125


>gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert]
          Length = 619

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 101/586 (17%), Positives = 167/586 (28%), Gaps = 119/586 (20%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLKE--ALENTDV 66
            D+   G+        +      +   D   V     D   D     ++ E  AL    +
Sbjct: 54  TDIETPGLD---NSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVAEMYALAGPVI 110

Query: 67  TIVAHNSYFERTVLKACFNLDIPI--HRWICTLVLARSN---GLPSALKAVGEALK---L 118
               HN+ F+   L     +   +   R + T+VLAR       P        AL    L
Sbjct: 111 L---HNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYL 167

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              + + G E   +    +T +  Y+    +      ++ +    D   T      LEP+
Sbjct: 168 GLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSP----IYRQGAMADTVATLA----LEPV 219

Query: 179 SSKEQELWYLD--------------------QTINDR--------GYCVDVALAHTLNQI 210
             +    W LD                    Q I  R        G  VD          
Sbjct: 220 MRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRYLNQ 279

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSS 265
           V  E+     +L    +GL   +    KL  +L     L               +  L +
Sbjct: 280 VADEQAIYTADLA--AHGLDGGTGKGAKLVQYLAERGELPQPWPRTPKGALRATKADLEA 337

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
              + P A    +          L   +   A+   GR    +  LGAS           
Sbjct: 338 LATVNPLAKAQLSLANIEKTLGYLSKVSTQAAV--TGRCHPQVATLGAS----------- 384

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
                                       P+  Q   D     ++  +G  L   D + IE
Sbjct: 385 -------------------ATGRMSYGSPELQQFPKDARP--ILCDDGDGLTSIDWSQIE 423

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
              +A MA +   L A+E GEDLY                   R   KV+ L+  Y  G 
Sbjct: 424 PVTMANMARDIDFLAAYEAGEDLY---------GPIMLAAGIDRPTSKVVLLSSMYGSG- 473

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               K+A+  G    + A +       + +   +   +WM +   E A +   + TA  R
Sbjct: 474 --IAKLAALIGHTEESTAQI-----KRQMFAAMKRSAKWMVK-VEEVAAQFGRVITAGGR 525

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
           +          + +  N   Q     +     +   +R     +Y+
Sbjct: 526 ILPV---DEGGIFKAVNYTVQGSAYDVLANTIVEMYRRGMTDELYL 568


>gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie]
          Length = 619

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 101/586 (17%), Positives = 167/586 (28%), Gaps = 119/586 (20%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLKE--ALENTDV 66
            D+   G+        +      +   D   V     D   D     ++ E  AL    +
Sbjct: 54  TDIETPGLD---NSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVAEMYALAGPVI 110

Query: 67  TIVAHNSYFERTVLKACFNLDIPI--HRWICTLVLARSN---GLPSALKAVGEALK---L 118
               HN+ F+   L     +   +   R + T+VLAR       P        AL    L
Sbjct: 111 L---HNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYL 167

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              + + G E   +    +T +  Y+    +      ++ +    D   T      LEP+
Sbjct: 168 GLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSP----IYRQGAMADTVATLA----LEPV 219

Query: 179 SSKEQELWYLD--------------------QTINDR--------GYCVDVALAHTLNQI 210
             +    W LD                    Q I  R        G  VD          
Sbjct: 220 MRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRYLNQ 279

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSS 265
           V  E+     +L    +GL   +    KL  +L     L               +  L +
Sbjct: 280 VADEQAIYTADLA--AHGLDGGTGKGAKLVQYLAERGELPQPWPRTPKGALRATKADLEA 337

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
              + P A    +          L   +   A+   GR    +  LGAS           
Sbjct: 338 LATVNPLAKAQLSLANIEKTLGYLSKVSTQAAV--TGRCHPQVATLGAS----------- 384

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
                                       P+  Q   D     ++  +G  L   D + IE
Sbjct: 385 -------------------ATGRMSYGSPELQQFPKDARP--ILCDDGDGLTSIDWSQIE 423

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
              +A MA +   L A+E GEDLY                   R   KV+ L+  Y  G 
Sbjct: 424 PVTMANMARDIDFLAAYEAGEDLY---------GPIMLAAGIDRPTSKVVLLSSMYGSG- 473

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               K+A+  G    + A +       + +   +   +WM +   E A +   + TA  R
Sbjct: 474 --IAKLAALIGHTEESTAQI-----KRQMFAAMKRSAKWMVK-VEEVAAQFGRVITAGGR 525

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
           +          + +  N   Q     +     +   +R     +Y+
Sbjct: 526 ILPV---DEGGIFKAVNYTVQGSAYDVLANTIVEMYRRGMTDELYL 568


>gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 375

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 119/369 (32%), Gaps = 79/369 (21%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QNLP                                 VR+C I  +G   V ADL  I
Sbjct: 26  NLQNLPAKG--------------------------AGVRVRNCFIPRKGFTFVGADLGQI 59

Query: 385 EARVLAWMA----GEQWKLKAFETGEDLYVTTYARSFNVA----PAQV-----TKDQRAI 431
           E R++A +     G+    + F  G DLY T   ++F +       +      T + R +
Sbjct: 60  EPRIMAHIMHTKYGDNSMRQIFMDGVDLYTTGAMQTFGLEEKYCLDEAYDPTGTFEPRKL 119

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K  +LA+ Y    K+F   A    +               E ++      R M ++  E
Sbjct: 120 MKTGQLAVSYDQSPKSF---AKKMNVTEEVAHMF------FENFDRTYPSFRTMVKDIRE 170

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                 ++ T   R K+ +   +   S+      Q   +     K +  +K      +  
Sbjct: 171 EMKSCGYVETLFGR-KRRFPDFNEVASQTARN-EQKLIRLYTERKRLRNKKNPTAADMRR 228

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                + I +L   R LV                   R           ++Q    DIL 
Sbjct: 229 LTAVQDEIDILSEKRGLVGY---------------WLRA------AFNAVIQGTGADILK 267

Query: 612 -EGMMNAT---KAGYDIVLTVHDEIVCETPDTD--EFNASMLYHLMTSNPSWAKGLPLKA 665
             G+ NA    + G+++  ++HDEI    P+    E    ++  +MT        +PL  
Sbjct: 268 LIGIRNAEICRERGWEMNASIHDEIKNSIPNEQLTEGTIDLINEIMTQTVE--LSVPLIT 325

Query: 666 EGYESKRYR 674
           +     R+ 
Sbjct: 326 DTVIEPRWM 334


>gi|212695717|ref|ZP_03303845.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677390|gb|EEB36997.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 210

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 80/266 (30%), Gaps = 86/266 (32%)

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   +AF    D++  T +  F+    +VTK QR+  K +   + Y           S  
Sbjct: 3   KKMQEAFSHDIDIHTKTASEVFDTPIDEVTKLQRSEAKAVNFGIIYG---------ISDY 53

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL+ N      +     E + +     +   ++  + A E+ F+ T              
Sbjct: 54  GLSQNLNIPRKRAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNT-------------- 99

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                  I  +RR VP +              + ++   R  G 
Sbjct: 100 -----------------------IFNRRRYVPEI--------------NSKNFNVRSFGE 122

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVH 629
            R  LNT                   +Q  + DI+   M      +   K    IVL +H
Sbjct: 123 -RVALNTP------------------IQGSAADIIKFAMINSYENLKKAKVDAKIVLQIH 163

Query: 630 DEIVCETPDTDEFNASML-YHLMTSN 654
           DEI+ E    D   A  +    M   
Sbjct: 164 DEIIIEASKKDLTKAKEILKSSMEEA 189


>gi|213025755|ref|ZP_03340202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 107

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361
            L++ G ++         P    P+  R H    Q +T      ++DP+   I       
Sbjct: 27  ILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 86

Query: 362 DCVRSCVIASEGKKLVVADLA 382
             +R   IA E   +V AD +
Sbjct: 87  RRIRQAFIAPEDYLIVSADYS 107


>gi|158425221|ref|YP_001526513.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
 gi|158332110|dbj|BAF89595.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
          Length = 609

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 99/587 (16%), Positives = 175/587 (29%), Gaps = 111/587 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-ELWDCVHDPV----MP- 54
           M+ L  D ET         G+     D    +      D    ++W C  D      +P 
Sbjct: 1   MSHLIFDIET--------NGL----LDATNRVHCLCIKDADTGQVWSCTDDGPTGTYIPI 48

Query: 55  QVLKEALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           +   + L + +V I  HN   F+   L+  +    P      T+V +R       L+   
Sbjct: 49  ERGLQLLADAEVLI-GHNILKFDIPALQKVYPWWKPKGVLRDTIVCSRLIWPKDDLRE-- 105

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECL-YDRNKPNHREAWRL-FGEYCKGDVTVTREI 171
              +L  Q    G  +     +   +    Y  +     + W     +YC+ DV VT  +
Sbjct: 106 RDFRLQKQGKLPGNLIGRYALEAWGYRLGEYKGDYKGPWDVWSQEMQDYCEQDVEVTFRL 165

Query: 172 FKRLEPLSSKEQ--ELWYLDQTI----NDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +++++    KE+  EL +  Q I       G+  D A A +L   +   +T+L+ EL+S 
Sbjct: 166 YQKIKEKGWKEESIELEHRVQWIIHRQEQYGFLFDQAKAASLYADLVQRKTELEAELQSA 225

Query: 226 -----------------------------TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
                                           +       + +   L  + G    + T+
Sbjct: 226 FPPWEVESVFVPKVNNRVRGYVKGVPFTKRRTIHFKPSSRDHIAGRLKAKYGWEPSEFTD 285

Query: 257 TTCQRVLSS-NKKLT-PQAIQVFNNRMRASRSA--VLKLNTLVEAMNSDGRLRGTLQFLG 312
               +V       L  P+A  +    M   R           ++ + +DGR+ G +   G
Sbjct: 286 EGKPKVDEDVLSHLPYPEAKLLSEYLMVEKRLGQIATGKEAWLKHVKADGRIHGDVTTNG 345

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           A  TGR +        +P     +                            R   +A++
Sbjct: 346 AV-TGRMTHSKPNIAQVPGNGSPY------------------------GHRCRELFVAAK 380

Query: 373 GKKLVVADLAGIEARVLA-WMAGEQW-------KLKAFETGEDLYVTTYARSFNVAPAQV 424
            K LV  D   +E R LA +MA                E G D++               
Sbjct: 381 RKLLVGCDADALELRCLAGYMARYDGGAYVRTVLEGKKELGTDMHTLNAKAL-------- 432

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + KV   A  Y  G      +     L             +   +  A      
Sbjct: 433 -GCSRDVAKVWFYAFIYGAGDFKLGTI-----LGAPKGEEQKWGRRSRARFLKALPALGT 486

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
           + +   E   +  F+    +  +   R  HS  + L         + 
Sbjct: 487 IIKKVQEKVQKKGFL-RGLDGRELRVRSAHSAFNTLLQSAGAVLMKM 532


>gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio]
          Length = 619

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 101/586 (17%), Positives = 167/586 (28%), Gaps = 119/586 (20%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLKE--ALENTDV 66
            D+   G+        +      +   D   V     D   D     ++ E  AL    +
Sbjct: 54  TDIETPGLD---NSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVAEMYALAGPVI 110

Query: 67  TIVAHNSYFERTVLKACFNLDIPI--HRWICTLVLARSN---GLPSALKAVGEALK---L 118
               HN+ F+   L     +   +   R + T+VLAR       P        AL    L
Sbjct: 111 L---HNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYL 167

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              + + G E   +    +T +  Y+    +      ++ +    D   T      LEP+
Sbjct: 168 GLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSP----IYRQGAMADTVATLA----LEPV 219

Query: 179 SSKEQELWYLD--------------------QTINDR--------GYCVDVALAHTLNQI 210
             +    W LD                    Q I  R        G  VD          
Sbjct: 220 MRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRYLNQ 279

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSS 265
           V  E+     +L    +GL   +    KL  +L     L               +  L  
Sbjct: 280 VADEQAIYTADLA--AHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGALRATKADLEY 337

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             ++ P A    +          L   +   A+   GR    +  LGAS           
Sbjct: 338 LAEINPLAKAQLSLANIEKTLGYLTKVSTQAAV--TGRCHPQVATLGAS----------- 384

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
                                       P+  Q   D     ++  +G  L   D + IE
Sbjct: 385 -------------------ATGRMSYGSPELQQFPKDARP--ILCDDGDGLTSIDWSQIE 423

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
              +A MA +   L A+E GEDLY                   R   KV+ L+  Y  G 
Sbjct: 424 PVTMANMARDIDFLAAYEAGEDLY---------GPIMLAAGIDRPTSKVVLLSSMYGSG- 473

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               K+A+  G    + A +       + +   +   +WM +   E A +   + TA  R
Sbjct: 474 --IAKLAALIGHTEESTAQI-----KRQMFAAMKRSAKWMVK-VEEVAAQFGRVITAGGR 525

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
           +          + +  N   Q     +     +   +R     +Y+
Sbjct: 526 ILPV---DEGGIFKAVNYTVQGSAYDVLANTIVEMYRRGMTDELYL 568


>gi|322492142|emb|CBZ27416.1| DNA polymerase theta (polymerase domain only),putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1171

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/377 (14%), Positives = 91/377 (24%), Gaps = 111/377 (29%)

Query: 314  SRTGRWSGCVFPPQNLP------------------RPSRSHEELD--------------- 340
            + TGR    +   QN+P                  R S   E L                
Sbjct: 810  TSTGRIFSSLPNVQNVPKQPPRTAFPIHTLSATPSRNSGGDESLRHYSYVDPPTEEDVAR 869

Query: 341  -----QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                 +       S    P   +     +R    A  G  L   D   +E R+LA ++G+
Sbjct: 870  WLALAEAALVDQASSAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGD 929

Query: 396  QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +      D+     A    +     V   QR   KV+   L Y  G ++       
Sbjct: 930  AALQEHLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKK 989

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                  T                               A        +   + + +   +
Sbjct: 990  INEEFATSEQQQHHRGG--------------------EASSPGPAPMSAHDLLRRFHHVY 1029

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             R+     E  Q   +                          +  +   SGR  +  +  
Sbjct: 1030 PRIESYLRETRQEALR--------------------------SFAVETLSGRKSLIAEKD 1063

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----------KAGYD 623
             NR           R+           VQ  + D+L   M                A   
Sbjct: 1064 ANR----------RRQRAIAQA-----VQGGAADVLHSAMRAVHQQRHSFLPYLPAATLA 1108

Query: 624  IVLTVHDEIVCETPDTD 640
            +V++VHDE+V   P   
Sbjct: 1109 LVMSVHDELVYAVPRAA 1125


>gi|157870107|ref|XP_001683604.1| DNA polymerase theta (polymerase domain only) [Leishmania major
            strain Friedlin]
 gi|68126670|emb|CAJ04554.1| putative DNA polymerase theta [Leishmania major strain Friedlin]
          Length = 1170

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 97/377 (25%), Gaps = 113/377 (29%)

Query: 314  SRTGRWSGCVFPPQNLP------------------RPSRSHEELD--------------- 340
            + TGR    +   QNLP                  R S   E L                
Sbjct: 811  TSTGRIFSALPNVQNLPKQPPRTMFPIHALSATPSRNSGGDESLRPYSHIDPPTEEDVER 870

Query: 341  -----QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                 +       S    P   +     +R    A  G  L   D   +E R+LA ++G+
Sbjct: 871  WLSLAEAAAVDQASPAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGD 930

Query: 396  QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +      D+     A    +    +V   QR   KV+   L Y  G ++       
Sbjct: 931  AALQEHLSANVDVLALVTASVLRLPSIDRVRPQQRQAVKVVVYGLLYGMGLESMDVRIKK 990

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                    E F    Q+ H   A            + + + + +
Sbjct: 991  IN----------------------EEFAASEQQQHRGEASSSAPAPMPARDLLRRFHRVY 1028

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             R+     E  Q   +                          +  +   SGR  +  +  
Sbjct: 1029 PRIESYLRETRQEALR--------------------------SFAVETLSGRKSLIAEKD 1062

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----------- 623
             NR           ++           VQ  + D+L   M    +  +            
Sbjct: 1063 ANR----------RKQRAIAQA-----VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA 1107

Query: 624  IVLTVHDEIVCETPDTD 640
            +V+++HDE+V   P   
Sbjct: 1108 LVMSIHDELVYAVPRVA 1124


>gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1]
 gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion]
 gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah]
 gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1]
 gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion]
 gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah]
 gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang]
 gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C]
          Length = 619

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 101/586 (17%), Positives = 167/586 (28%), Gaps = 119/586 (20%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLKE--ALENTDV 66
            D+   G+        +      +   D   V     D   D     ++ E  AL    +
Sbjct: 54  TDIETPGLD---NSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVAEMYALAGPVI 110

Query: 67  TIVAHNSYFERTVLKACFNLDIPI--HRWICTLVLARSN---GLPSALKAVGEALK---L 118
               HN+ F+   L     +   +   R + T+VLAR       P        AL    L
Sbjct: 111 L---HNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYL 167

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              + + G E   +    +T +  Y+    +      ++ +    D   T      LEP+
Sbjct: 168 GLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSP----IYRQGAMADTVATLA----LEPV 219

Query: 179 SSKEQELWYLD--------------------QTINDR--------GYCVDVALAHTLNQI 210
             +    W LD                    Q I  R        G  VD          
Sbjct: 220 MRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRYLNQ 279

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSS 265
           V  E+     +L    +GL   +    KL  +L     L               +  L  
Sbjct: 280 VADEQAIYTADLA--AHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGALRATKADLEY 337

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             ++ P A    +          L   +   A+   GR    +  LGAS           
Sbjct: 338 LAEINPLAKAQLSLANIEKTLGYLTKVSTQAAV--TGRCHPQVATLGAS----------- 384

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
                                       P+  Q   D     ++  +G  L   D + IE
Sbjct: 385 -------------------ATGRMSYGSPELQQFPKDARP--ILCDDGDGLTSIDWSQIE 423

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
              +A MA +   L A+E GEDLY                   R   KV+ L+  Y  G 
Sbjct: 424 PVTMANMARDIDFLAAYEAGEDLY---------GPIMLAAGIDRPTSKVVLLSSMYGSG- 473

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               K+A+  G    + A +       + +   +   +WM +   E A +   + TA  R
Sbjct: 474 --IAKLAALIGHTEESTAQI-----KRQMFAAMKRSAKWMVK-VEEVAAQFGRVITAGGR 525

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
           +          + +  N   Q     +     +   +R     +Y+
Sbjct: 526 ILPV---DEGGIFKAVNYTVQGSAYDVLANTIVEMYRRGMTDELYL 568


>gi|62327214|ref|YP_223952.1| DNA polymerase [Phage phiJL001]
 gi|50059532|gb|AAT69504.1| DNA polymerase [Phage phiJL001]
          Length = 631

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 97/693 (13%), Positives = 182/693 (26%), Gaps = 165/693 (23%)

Query: 7   DFETRSP--IDLT---KCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLK 58
           D ET  P   D     + G         +  + F  D  P       H   D +    + 
Sbjct: 32  DLETYDPHLKDTGPSVRTGGH-------IAGYGFAIDGGPKHYLPVRHENGDNLDAAQVL 84

Query: 59  EALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALK 110
             +++   T     V  N  ++         +D+P+ +    +++A           +L 
Sbjct: 85  RYIKDQFKTFDGELVGANLGYDLD-WAWAEGIDMPLVKAYRDVLIAEPCINENKFFYSLD 143

Query: 111 AV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +V G+ L     K    +   A   + ++    Y    P       ++GE          
Sbjct: 144 SVAGDWLGEQKSKTLMIEAARAYGMRKDSELGSYIHLLPARYVG--VYGEDDCALPLRIL 201

Query: 170 EIFKR------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           E+ ++      ++ +   E ++  +   +  RG  VD      +      ER      + 
Sbjct: 202 ELQEKEIEQQGIQAVWDLESKVLPVLVRMRQRGVKVDEDRLMEVEIRATKERRDASDLIT 261

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV------- 276
            +T   V     ++K         G+ ++ L     Q            A          
Sbjct: 262 RVTGVAVGPEDAMKK---------GILVDALRAAGHQLNADDAVDKHFIARHEGHCEVTA 312

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA----------SRTGRWSGCVFPP 326
              R+R   +        V+    +GR+  +   + A          +R GR S      
Sbjct: 313 ALGRLRKWDTLRKLAIDPVKNHMVNGRIHCSFNQMAADKDNGKGTKGARYGRLSCEHVNM 372

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q  P                    + D D   I     R      +G      D +  E 
Sbjct: 373 QQQP--------------------SRDEDIAPIWRRIYR----PDDGGLWAALDYSQQEP 408

Query: 387 RVLAWMAGEQWK------LKAFETGEDL--YVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           R+L   A            + +    D   +              +    R   K++ L 
Sbjct: 409 RMLVHFAEICGMPGASEAAQKYRDDPDTDNHQMMA---------DMAGISRKEAKIIFLG 459

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y  G +                          +  E  +          P    + + 
Sbjct: 460 LCYGMGQEKLCH----------------DLQLPTKIIELKKG---------PRKGQKMVV 494

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
            G    R+ + +  K   V ++ N       +        +  +R    +          
Sbjct: 495 AGDEGARLFETFHAKVPFVKQMENLCKDRATE--RGFITTLLGRRCRFKM---------- 542

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                    L Y                         K    ++Q  S D     M+ A 
Sbjct: 543 -----GDDGLNY----------------WGTH-----KALNRLIQGSSADQTKAAMVAAD 576

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
           +AGY++ L VHDE   +        A  +  +M
Sbjct: 577 EAGYELQLQVHDE--IDLTVESREQAEKIAEIM 607


>gi|156319560|ref|XP_001618134.1| hypothetical protein NEMVEDRAFT_v1g225484 [Nematostella vectensis]
 gi|156197578|gb|EDO26034.1| predicted protein [Nematostella vectensis]
          Length = 758

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 112/379 (29%), Gaps = 66/379 (17%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
           N  G  +D+   + L      +       L         +    ++++ +++   G    
Sbjct: 82  NFEGLQIDMEKRNELRTASQKQLDTARSRLHVKFADPAFNPGSWQQVEKYIYNIFGASKP 141

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRM----RASRSAVLKLNTLVEAMNSDGRLRGTL 308
            + ++       +   +  Q       R+     A R A   + T  + +   GRL   L
Sbjct: 142 KIGKSKSGTDEKNLLAVAEQ--HPLLARLTTDILAYREAQKAIGTYYDFLRFQGRLLWAL 199

Query: 309 QFLGASRTGRWSG------CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
              G + T R +       C    QN+P                                
Sbjct: 200 NPFG-TETERMACSASSLWCGTQVQNIP-------------------------------S 227

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAP 421
             +  ++A +G +L  AD +  E R  A+ A E   + A ET G D Y T     FN+  
Sbjct: 228 YAKQMLVADDGYELFEADNSQSEGRTTAYCAQEPALIAALETAGRDFYRTLGTLFFNIPY 287

Query: 422 AQVTKDQRAIG-KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            +VT   R    K +     Y  G K F +      L        +K    P +  + E 
Sbjct: 288 EEVTDFFRNKVLKRIVHGTNYMMGGKTFTENIGIVVLYETAPKVGIKLVEIPTKDAEMEM 347

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
             R                    + +   + +   R+ + + E+      T   G  +  
Sbjct: 348 TIRQF-----------------AKYLLDLYHEPFPRIRKWYGEIKTEVATT---GYIVSP 387

Query: 541 RKRRDVPLVYMKKDKNNLI 559
                     + +D N L 
Sbjct: 388 LGHVRKCFGNITRDHNMLR 406


>gi|71416914|ref|XP_810416.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70874942|gb|EAN88565.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1627

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 75/466 (16%), Positives = 135/466 (28%), Gaps = 99/466 (21%)

Query: 243  LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE---AMN 299
            L L  G  L  L              +TP+ +    +R    R+A    + +      ++
Sbjct: 1207 LPLSLGAELRGLHGQERASTRGLLWIVTPEELHPLLHRSLRGRNASSGADAIERITVLLS 1266

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQ--------NLPR-PSRSHEELDQIITHLPTSI 350
            SD ++   L F  A +  R++                LP    R H EL   +T      
Sbjct: 1267 SDKQI--DLSFFKALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGELCHTVTATGRLS 1324

Query: 351  TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            +  P+   I     +   + S     EG +++ AD + +E  VLA ++ +   L+     
Sbjct: 1325 SQSPNLQNIPREEDLRRLIVSRFGRREG-RMIEADYSQLEVVVLAALSRDTRMLQELHDK 1383

Query: 406  EDLYVTTYARSFNVAPAQVTK-----------DQRAIGKVMELALGYQGGAKAFQKMAST 454
             D +    +         V +             R   K       Y  G       A+T
Sbjct: 1384 VDFHCLRVSLMTKEPYENVVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATI---ATT 1440

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            TGL  +    L+      + ++D   + R                               
Sbjct: 1441 TGLTEHEVERLISAEE--QHYKDLSRYYRL------------------------------ 1468

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                             +E G   + R R      +    +  ++L  P      +    
Sbjct: 1469 -------------VMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLH---YFVVPT 1512

Query: 575  NNRSYLNTTTRQLTREYTYG-GKLTENIVQAVSRDILAEGMMNATKAGYD----IVLTVH 629
             ++       + + R   Y    L   IVQ +   I+        K  YD    +V TVH
Sbjct: 1513 GSKFDFAKDKKSIPRLKNYPVQGLAGEIVQIMCGKIVR---RFYEKRNYDGRAFLVNTVH 1569

Query: 630  DEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAE 666
            D +  +   +        +  +M+S         P     +P  A+
Sbjct: 1570 DCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNAD 1615


>gi|71414776|ref|XP_809478.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70873866|gb|EAN87627.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1499

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 75/466 (16%), Positives = 135/466 (28%), Gaps = 99/466 (21%)

Query: 243  LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE---AMN 299
            L L  G  L  L              +TP+ +    +R    R+A    + +      ++
Sbjct: 1079 LPLSLGAELRGLHGQERASTRGLLWIVTPEELHPLLHRSLRGRNASSGADAIERITVLLS 1138

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQ--------NLPR-PSRSHEELDQIITHLPTSI 350
            SD ++   L F  A +  R++                LP    R H EL   +T      
Sbjct: 1139 SDKQI--DLSFFKALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGELCHTVTATGRLS 1196

Query: 351  TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
            +  P+   I     +   + S     EG +++ AD + +E  VLA ++ +   L+     
Sbjct: 1197 SQSPNLQNIPREEDLRRLIVSRFGRREG-RMIEADYSQLEVVVLAALSRDTRMLQELHDK 1255

Query: 406  EDLYVTTYARSFNVAPAQVTK-----------DQRAIGKVMELALGYQGGAKAFQKMAST 454
             D +    +         V +             R   K       Y  G       A+T
Sbjct: 1256 VDFHCLRVSLMTKEPYENVVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATI---ATT 1312

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            TGL  +    L+      + ++D   + R                               
Sbjct: 1313 TGLTEHEVERLISAEE--QHYKDLSRYYRL------------------------------ 1340

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                             +E G   + R R      +    +  ++L  P      +    
Sbjct: 1341 -------------VMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLH---YFVVPT 1384

Query: 575  NNRSYLNTTTRQLTREYTYG-GKLTENIVQAVSRDILAEGMMNATKAGYD----IVLTVH 629
             ++       + + R   Y    L   IVQ +   I+        K  YD    +V TVH
Sbjct: 1385 GSKFDFAKDKKSIPRLKNYPVQGLAGEIVQIMCGKIVR---RFYEKRNYDGRAFLVNTVH 1441

Query: 630  DEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAE 666
            D +  +   +        +  +M+S         P     +P  A+
Sbjct: 1442 DCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNAD 1487


>gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 704

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 88/551 (15%), Positives = 169/551 (30%), Gaps = 110/551 (19%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ----------- 55
           D ET S             E   + L     +   V++          +           
Sbjct: 45  DLETFSRASTPA----IAPETGEIRLIQIAIEQPAVQVIVIDLGWTAKERSRIHQKLESL 100

Query: 56  ----VLKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLA---------- 100
                L+E L N  V +V H+  FE R +L      + PI     T +++          
Sbjct: 101 GFWTTLQERLANPQVEVVGHSLDFEQRWMLAKY---NFPIRNLRDTKLMSQVYWAGLDPW 157

Query: 101 --RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
             + +G P +L++V   L +S  K  +  +       G+        N+           
Sbjct: 158 LLKQHGKPHSLESVCLRLGISIDKSRQTSDW----GWGDLGNGQLSNNQ----------F 203

Query: 159 EYCKGDVTVTREIFKRLEPLSSK--EQELWYLD-------QTINDRGYCVDVALAHTLNQ 209
            Y   D ++T ++   LEP   +      + ++         ++  G  VD  +   +  
Sbjct: 204 NYAANDASITIKVHDLLEPRLKEIGVWTSYLIECAASPAFAQMSHYGMPVDEGVLADVTV 263

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
             +     L ++L       +      +KL   +     + L+          +    KL
Sbjct: 264 AYEAAYQSLVEQLGGTFSECLPHLYSPKKLIALINRRFRVTLKSAN-------VDDLSKL 316

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                    + ++ +++ V  L+++   +  +G +RG    +     GR S      QN 
Sbjct: 317 WGIPEVRLISVIKTTKTYVDYLHSIQAQV-RNGFVRGKYTQINRKGFGRSSCSEPNLQNP 375

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P P+    EL              P  L      +RS      G   V  D + + ARV 
Sbjct: 376 PSPTTFPPEL-------------TPYNLPP----IRSVFRTHSGCIGVWCDASKLHARVA 418

Query: 390 AWMAGEQWKLKAFET-GEDLYVTTYARSFNVA------PAQV---------------TKD 427
              + +   +  F +   D++ T   +   +         +                   
Sbjct: 419 TQASLDPELIARFNSPHGDIFCTIAEKLSQLEGMGSDWTEENIRRWTLDKHHANYAQASR 478

Query: 428 QRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            RA+ K +        G +  QK   T +G+ L+  +      ++ + W          Q
Sbjct: 479 LRAMSKSVHYGSQNLQGWRTLQKTIRTKSGIVLSDES----AKNSIKAWRQTYKVLASFQ 534

Query: 487 ENHPEHAIEDL 497
            +  E A  DL
Sbjct: 535 HSIVEKANHDL 545


>gi|322489694|emb|CBZ24954.1| mitochondrial DNA polymerase I protein C,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1538

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 121/432 (28%), Gaps = 86/432 (19%)

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQ- 327
            TP+ +     R    +SA    + +          +   L F  A +  R++        
Sbjct: 1146 TPEKLHPLLRRFLRGKSASSGADAMERVTMLLSPYKTIDLSFFSALQQLRFTEKKLQLFE 1205

Query: 328  -------NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKK--L 376
                    LP    R H EL   +T      +  P+   I  +  +R  +++  G +  +
Sbjct: 1206 EGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGMM 1265

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---------- 426
            + AD + +E  VLA +  +   ++      D +    +         V +          
Sbjct: 1266 IEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVMRKAKVEKDPQY 1325

Query: 427  -DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
               R   KV      Y  G         TTGL       L+                   
Sbjct: 1326 IQLRQQAKVFSFQRQYGAGVSTIST---TTGLTEQEVDRLIVAEE------------HHY 1370

Query: 486  QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +E    +++    +    +R+ +  R      + LWN   +      E            
Sbjct: 1371 KELSKYYSLVTRCVEAGADRLLR-LRTLD---TSLWNANIRRVVMLTE------------ 1414

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
             P+ Y      +        +S+            N   +           L   IVQ +
Sbjct: 1415 -PMYYFVVPTGSKFDFTRDRKSVPRLK--------NYPVQG----------LAGEIVQIM 1455

Query: 606  SRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN-------- 654
               I+ E        G    +V TVHD +  +          + L  +M           
Sbjct: 1456 CGAIVRE-FYRKRNYGEKAFLVNTVHDCVWVDAHKCVADEVRADLARIMGHTQEAIAALW 1514

Query: 655  PSWAKGLPLKAE 666
            P     +P KAE
Sbjct: 1515 PDMKLDVPFKAE 1526


>gi|283969363|gb|ADB54415.1| DNA polymerase I [Leptospira interrogans]
 gi|283969375|gb|ADB54421.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969377|gb|ADB54422.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969379|gb|ADB54423.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969381|gb|ADB54424.1| DNA polymerase I [Leptospira interrogans]
 gi|283969383|gb|ADB54425.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969385|gb|ADB54426.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969387|gb|ADB54427.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969389|gb|ADB54428.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969391|gb|ADB54429.1| DNA polymerase I [Leptospira interrogans serovar IH CF1]
 gi|283969393|gb|ADB54430.1| DNA polymerase I [Leptospira interrogans]
 gi|283969395|gb|ADB54431.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969399|gb|ADB54433.1| DNA polymerase I [Leptospira interrogans]
 gi|283969401|gb|ADB54434.1| DNA polymerase I [Leptospira interrogans]
 gi|283969403|gb|ADB54435.1| DNA polymerase I [Leptospira interrogans]
 gi|283969405|gb|ADB54436.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969407|gb|ADB54437.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969422|gb|ADB54444.1| DNA polymerase I [Leptospira interrogans]
 gi|283969424|gb|ADB54445.1| DNA polymerase I [Leptospira interrogans]
 gi|283969426|gb|ADB54446.1| DNA polymerase I [Leptospira interrogans]
 gi|283969428|gb|ADB54447.1| DNA polymerase I [Leptospira interrogans]
 gi|283969430|gb|ADB54448.1| DNA polymerase I [Leptospira interrogans]
 gi|283969432|gb|ADB54449.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969436|gb|ADB54451.1| DNA polymerase I [Leptospira interrogans]
 gi|283969438|gb|ADB54452.1| DNA polymerase I [Leptospira interrogans]
 gi|283969444|gb|ADB54455.1| DNA polymerase I [Leptospira interrogans]
 gi|283969446|gb|ADB54456.1| DNA polymerase I [Leptospira interrogans]
 gi|283969450|gb|ADB54458.1| DNA polymerase I [Leptospira interrogans]
 gi|283969452|gb|ADB54459.1| DNA polymerase I [Leptospira interrogans]
 gi|283969454|gb|ADB54460.1| DNA polymerase I [Leptospira interrogans]
          Length = 144

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +DV     L +  D E   L+ E+     G   +    ++L+  LF +  L +   
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGG-PFNIASTKELQKILFDDLKLRIVKK 59

Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310
           T+T   T   VL       P   ++ + R + ++     ++ L + +N   GR+  +   
Sbjct: 60  TQTGFSTDHEVLEELAGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHE 337
             A+ TGR S      QN+P   R   
Sbjct: 119 TIAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|32442285|gb|AAP82213.1| DNA polymerase [Podovirus GOM]
          Length = 409

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 111/379 (29%), Gaps = 106/379 (27%)

Query: 141 CLYDRNKPNHREAWRLFGE----YCKGDVTVTREIFKRLEPLSSK---------EQELWY 187
               R+K    E +  F      YC+ DV++  ++++ L  + +          E  ++ 
Sbjct: 23  GYRLRHKKIEFEDFESFSPEMMAYCRQDVSLNHKVYQHLARVEAAGFSKDAVTLEHSVYR 82

Query: 188 LDQTINDRGYCVD--------VALAHTLNQIVDVERTKLDQELESLT------------- 226
           + Q   DRG+ +D          L   L+Q   +           +T             
Sbjct: 83  IMQAQRDRGFLLDEKHAMSLQAELNENLSQAEKLVHKTFRPRETQMTLVPLMTKAGKVSK 142

Query: 227 --------------------------------YGLVSSSRCLEKLKTWLFLETGLHLEDL 254
                                                +    +++  +L +E G      
Sbjct: 143 MAQIKGETKKVRLSDEEYAKASANPNEHLVRCDSEPFNLGSRKQIGEYL-MEFGWKPAKF 201

Query: 255 TETT---CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T T        + S  K  P+A  +    M   R A  ++ +  + +  DGR+RG +   
Sbjct: 202 TPTGQPIVDEKVLSKIKDIPEAAVIAEYLMLQKRIA--QITSWFKEVGDDGRVRGFVNTN 259

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           GA  TGR +        +P     +                            R C    
Sbjct: 260 GAV-TGRMTHSHPNMAQVPSTGSPY------------------------GKECRQCWTVM 294

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +G KLV  D +G+E R+LA    ++        G D++  T  +           + R  
Sbjct: 295 DGYKLVGIDASGLELRMLAHYMNDEGFTYELLNG-DIH--TANQM------AAGLESRNQ 345

Query: 432 GKVMELALGYQGGAKAFQK 450
            K    AL Y  G      
Sbjct: 346 AKTFIYALLYGAGDAKLGA 364


>gi|283969415|gb|ADB54441.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969418|gb|ADB54442.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969420|gb|ADB54443.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969440|gb|ADB54453.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969448|gb|ADB54457.1| DNA polymerase I [Leptospira kirschneri]
          Length = 144

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +DV     L +  D E   L+ E+     G   +    ++L+  LF    L +   
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHKQAGG-PFNIASTKELQKILFDNLKLRIVKK 59

Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310
           T+T   T   VL       P   ++ + R + ++     ++ L + +N   GR+  +   
Sbjct: 60  TQTGFSTDHEVLEELAGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHE 337
             A+ TGR S      QN+P   R   
Sbjct: 119 TIAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|88856344|ref|ZP_01131003.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814428|gb|EAR24291.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 523

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 144/476 (30%), Gaps = 69/476 (14%)

Query: 140 ECLYDRNKPNH---REAWRLF-GEYCKGDVTVTREIFKRLEPLSSK-----------EQE 184
             L+D     H      WR    +    D   T      L   +S            +++
Sbjct: 90  SWLFDATTAGHVVYPGIWRESNSKGAARDAVATARFVVALPDDASAATRAAVWSSCAQEQ 149

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-ESLTYGLVSSSRCLEKLKTWL 243
           LW   Q     G+ +DV L +    + D  R     EL   LT     ++R  + +  WL
Sbjct: 150 LWRSRQL---EGHPIDVELLNRELAMADAHRVAAIAELGIDLTDSA--TARGSKAIHAWL 204

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
               G+ L D      +   S ++ L  +      +    ++S   K   +    +  G+
Sbjct: 205 -APVGVFLVD-----AKGAPSLSRDLYDRVSIPETD---EAQSRWKKFREVRSVASRVGK 255

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           LR                            R+H  L            + P  LQ I   
Sbjct: 256 LREI-------------QRALN------NGRTHSTLYVRRARTGRGAVTGP-ALQNIHRG 295

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  ++A  G+ LV  D + +E RV A ++ +   L A E+G DLY     R +      
Sbjct: 296 LRPLLMAPVGEVLVSLDFSQMEPRVSAGLSQDPDLLAALESG-DLYAELSRRIWGAEADD 354

Query: 424 VT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R   K + L + Y  G  A        G+       L+ +  A   +   +
Sbjct: 355 ADGKPNPLLRDRAKTLMLGIFYGEGKNAL---GRALGIEPKDAKVLLDSVWAA--FPGLQ 409

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE------LWNELHQAFEQTIE 533
            +  W+Q             G      K+      +   +       W  + +       
Sbjct: 410 AYDLWLQSEVRAGRPAFTQDGRPVPLPKRGLHAALNNRVQAESADIFWAAVARVAAVL-- 467

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
             K++      ++ +           ++L    + V+R V    + +    R   +
Sbjct: 468 GPKSLFLGVHDELVVSVPANRSEWARIVLEREMNTVFRGVPVTGTAV-VIGRSWRK 522


>gi|321399199|emb|CBZ08517.1| putative mitochondrial DNA polymerase I protein C [Leishmania
            infantum JPCM5]
          Length = 1548

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 120/427 (28%), Gaps = 76/427 (17%)

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQ- 327
            TP+ +     R    +SA    + +          +   L F  A +  R++        
Sbjct: 1156 TPEKLHPLLRRFLRGKSASSGADAMERVTMLLSPYKTIDLSFFSALQQLRFTEKKLQLFE 1215

Query: 328  -------NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKK--L 376
                    LP    R H EL   +T      +  P+   I  +  +R  +++  G +  +
Sbjct: 1216 EGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGMM 1275

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---------- 426
            + AD + +E  VLA +  +   ++      D +    +         V +          
Sbjct: 1276 IEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKAKVEKDPQY 1335

Query: 427  -DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
               R   KV      Y  G         TTGL       L+                   
Sbjct: 1336 IQLRQQAKVFSFQRQYGAGVSTIST---TTGLTEQEVDRLIVAEE------------HHY 1380

Query: 486  QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +E    +++    +    +R+ +  R      + LWN       + +   + I       
Sbjct: 1381 KELCKYYSLVTRCVEAGADRLLR-LRTLD---TSLWN---ANIRRAVMLTEPIYYFVVPT 1433

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL----NTTTRQLTREYTYGGK--LTE 599
                   +D+ ++       R   Y   G     +        R+  R+  YG K  L  
Sbjct: 1434 GSKFDFTRDRKSVP------RLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAFLVN 1487

Query: 600  NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAK 659
             +      D +                 V DE+  +           +  L    P    
Sbjct: 1488 TV-----HDCVWVDAHK----------CVADEVRADLARIMGHTQEAIAAL---WPDMKL 1529

Query: 660  GLPLKAE 666
             +P KAE
Sbjct: 1530 DVPFKAE 1536


>gi|261329543|emb|CBH12525.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei
            gambiense DAL972]
          Length = 1649

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 129/433 (29%), Gaps = 88/433 (20%)

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEA-MNSDGRLRGTLQFLGASRTGRWSGCVFPPQ- 327
            TP+ +    +R    RSA    + +    +      +  L F  A +  R+         
Sbjct: 1257 TPERLHPLLHRSLRGRSASSGADAIERINVLLSNEKQVDLSFFKALQQLRFMEKQMQLFE 1316

Query: 328  -------NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK---L 376
                    LP   +R H E   ++T      +  P+   I  + +R  +++  G++   +
Sbjct: 1317 EGALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPKEDLRCLIVSRFGRRAGRM 1376

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---------- 426
            + AD + +E  VLA ++ +   L+      D +    +         V            
Sbjct: 1377 IEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLRVSLMTKEPYEDVIHKVKQLKDPHY 1436

Query: 427  -DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
               R   K       Y  G       A+TTGL+      L+         +  ++  R+ 
Sbjct: 1437 IQLRQQAKTFSFQRQYGAGTSTI---ATTTGLSETEVVRLIAAEE-----QHYKDLGRYY 1488

Query: 486  QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +                                             +E G   + + R  
Sbjct: 1489 RL----------------------------------------VTDCVEAGADRLLQLRTL 1508

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG-GKLTENIVQA 604
                +    +  ++L  P      +     ++       + + R   Y    L   IVQ 
Sbjct: 1509 DATSWPPTMRRMVLLTEPMH---YFVVPTGSKFDFTKDKKAVPRLKNYPVQGLAGEIVQI 1565

Query: 605  VSRDILA--EGMMNATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPS----- 656
            +   I+       N     + +V TVHD +  +  ++  +     +  +M+S        
Sbjct: 1566 MCGKIIRRFYAKRNYNDKAF-LVNTVHDCVWIDAHESVADEVVDDVSAIMSSTSEVISSL 1624

Query: 657  WA---KGLPLKAE 666
            W      +P KAE
Sbjct: 1625 WPGVKLDVPFKAE 1637


>gi|322497680|emb|CBZ32756.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1548

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 120/427 (28%), Gaps = 76/427 (17%)

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQ- 327
            TP+ +     R    +SA    + +          +   L F  A +  R++        
Sbjct: 1156 TPEKLHPLLRRFLRGKSASSGADAMERVTMLLSPYKTIDLSFFSALQQLRFTEKKLQLFE 1215

Query: 328  -------NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKK--L 376
                    LP    R H EL   +T      +  P+   I  +  +R  +++  G +  +
Sbjct: 1216 EGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGMM 1275

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---------- 426
            + AD + +E  VLA +  +   ++      D +    +         V +          
Sbjct: 1276 IEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKAKVEKDPQY 1335

Query: 427  -DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
               R   KV      Y  G         TTGL       L+                   
Sbjct: 1336 IQLRQQAKVFSFQRQYGAGVSTIST---TTGLTEQEVDRLIVAEE------------HHY 1380

Query: 486  QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +E    +++    +    +R+ +  R      + LWN       + +   + I       
Sbjct: 1381 KELCKYYSLVTRCVEAGADRLLR-LRTLD---TSLWN---ANIRRAVMLTEPIYYFVVPT 1433

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL----NTTTRQLTREYTYGGK--LTE 599
                   +D+ ++       R   Y   G     +        R+  R+  YG K  L  
Sbjct: 1434 GSKFDFTRDRKSVP------RLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAFLVN 1487

Query: 600  NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAK 659
             +      D +                 V DE+  +           +  L    P    
Sbjct: 1488 TV-----HDCVWVDAHK----------CVADEVHADLARIMGHTQEAIAAL---WPDMKL 1529

Query: 660  GLPLKAE 666
             +P KAE
Sbjct: 1530 DVPFKAE 1536


>gi|167464943|ref|ZP_02330032.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384416|ref|ZP_08058102.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150774|gb|EFX44234.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 388

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 116/375 (30%), Gaps = 94/375 (25%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QNLP                                 VR+C I  +G   + ADL  I
Sbjct: 26  NLQNLPAKG--------------------------AGVRVRNCFIPRKGFTFIGADLGQI 59

Query: 385 EARVLAWMA----GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ------------ 428
           + R++A +     G+    + F  G DLY      +F +   QV  D+            
Sbjct: 60  QPRIMAHIMYVKYGDNSMRQIFVDGVDLYTKMAMMTFGLP-EQVCLDKAWYDPVSGQGGF 118

Query: 429 -----------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                      R + K  +LA+ Y    +AF   A    +  +            E +++
Sbjct: 119 GGEPPATAYYPRKMMKTGQLAVSYDQSPRAF---AKKMNVTEDVAHMF------FENFDE 169

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                + M +++ E    D ++ T   R K+ +   +            AF +  E    
Sbjct: 170 TFPSFKPMVKDYREMMKRDGYVETLFGR-KRRFPDFNE---------VAAFVKRNEQRLY 219

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
            +  +R+ +  +   +D +         R    +D  +  S          R        
Sbjct: 220 RLYSERKRLQNITNPRDAD-------RKRLTAVQDEIDILSAKRGLVGYWIRA------A 266

Query: 598 TENIVQAVSRDILAE----GMMNATKAGYDIVLTVHDEIVCETPDTD--EFNASMLYHLM 651
              ++Q    DIL            + G+++  ++HDEI    P+         ++  +M
Sbjct: 267 FNAVIQGTGADILKLIGIRNAAVCRERGWEMNASIHDEIKNSIPNDQFTAETIDLINEIM 326

Query: 652 TSNPSWAKGLPLKAE 666
                    +PL  +
Sbjct: 327 MKTVE--LSVPLVTD 339


>gi|119952216|ref|YP_950517.1| DNAP [Enterobacteria phage N4]
 gi|117650935|gb|ABK54408.1| DNAP [Enterobacteria phage N4]
          Length = 859

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 98/590 (16%), Positives = 164/590 (27%), Gaps = 135/590 (22%)

Query: 4   LFIDFETRSPIDLTK--CGICKYAEDVCVILF-------AFGFDDHPVE-LWDCVHDPVM 53
           L +D ET S   L    CGI        +          AF  D  P+E   +  +   +
Sbjct: 183 LAVDIETFS---LKHYDCGIG------TITFCWNKHEGIAFPVDYEPIEGATEAPYGRQV 233

Query: 54  PQVLKEALENTDVTIVA-----HNSYFERTVLKACF-------------NLDIPIHRWIC 95
             +L  ++              HN  F+   L                  + I +  W C
Sbjct: 234 HNMLVRSMLRDFFIKYLNRQMYHNIAFDVYALIYQLFMTDLLDTEGLLHGMSIMLRNWDC 293

Query: 96  TLVLARSN-----GLPSALKAVGE--ALKLSSQKMEEGKEL-IARFCKGETHECLYDRNK 147
           T ++         G   +LK   +  A   + +++ +   + +A   +    + L     
Sbjct: 294 TKLITYLATNSCAGNKLSLKDQAQEYAGNYAQEEINDITRIPLAELLEYNLVDGLCTW-- 351

Query: 148 PNHREAWRLFGEYCKGDV-----------TVTREIFKR---LEPLSSKEQELWY----LD 189
             + + W       + DV            +  ++      ++ +   E+ L        
Sbjct: 352 YVYEKHWDTLVNDQQLDVYTNIFKPACEDIIQMQLTGMPINMKTVLGVEEALTQDYNNAL 411

Query: 190 QTINDRGY------CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
           +TI D          ++       NQI+  +R  L    E        +     +L+  L
Sbjct: 412 KTIADSKVIKDFTRLLNEEWVEKQNQILKKKRVTLADAKEQ------FNPNSGVQLQKLL 465

Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL-----NTL 294
           F    L +  LT +    T   +L S K  T     +          AV K+       L
Sbjct: 466 FEFLELPVLGLTASKLPATGSGILKSLKNHTQDTSILEILDALIDYKAVDKILTAFIPAL 525

Query: 295 VEAMNSDGRLRGTLQFL--GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             A             L  G + +GR S      QNLP  SR                  
Sbjct: 526 KNARQGPDGWHYLFGNLNLGGTVSGRLSSSEPNLQNLPSGSRY----------------- 568

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                   +  ++ C  A  G      D A +E R+ A    +  KLK +  G D +   
Sbjct: 569 --------AKIIKKCFEAPPGWIFCGLDFASLEDRISALTTKDPNKLKVYTDGYDGHSLR 620

Query: 413 YARSFNVAPAQVT-------------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
               F      +              K  R   K    AL YQG      K         
Sbjct: 621 AYAYFGEMMPDIEDTVESVNSIQEKYKAYRQDSKAPTFALTYQGTYITLMKNCG------ 674

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                  K     E +           +   + A +D ++  A     + 
Sbjct: 675 ---FPEQKARMVEERYHTLYKVSDDWVQAKLDQAAKDGYVTVAFGLRVRT 721


>gi|283969353|gb|ADB54410.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
 gi|283969355|gb|ADB54411.1| DNA polymerase I [Leptospira interrogans]
 gi|283969357|gb|ADB54412.1| DNA polymerase I [Leptospira interrogans serovar Australis]
 gi|283969359|gb|ADB54413.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969361|gb|ADB54414.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969365|gb|ADB54416.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969367|gb|ADB54417.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969369|gb|ADB54418.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969371|gb|ADB54419.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969373|gb|ADB54420.1| DNA polymerase I [Leptospira interrogans serovar Bataviae]
 gi|283969397|gb|ADB54432.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969409|gb|ADB54438.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
 gi|283969413|gb|ADB54440.1| DNA polymerase I [Leptospira interrogans serovar Wolffi]
 gi|283969434|gb|ADB54450.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969456|gb|ADB54461.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
          Length = 144

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +DV     L +  D E   L+ E+     G   +    ++L+  LF    L +   
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGG-PFNIASTKELQKILFDNLKLRIVKK 59

Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310
           T+T   T   VL       P   ++ + R + ++     ++ L + +N   GR+  +   
Sbjct: 60  TQTGFSTDHEVLEELVGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHE 337
             A+ TGR S      QN+P   R   
Sbjct: 119 TIAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|72391456|ref|XP_846022.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei TREU927]
 gi|62176585|gb|AAX70690.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei]
 gi|70802558|gb|AAZ12463.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
          Length = 1649

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 128/433 (29%), Gaps = 88/433 (20%)

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEA-MNSDGRLRGTLQFLGASRTGRWSGCVFPPQ- 327
            TP+ +    +R    RSA    + +    +      +  L F  A +  R+         
Sbjct: 1257 TPERLHPLLHRSLRGRSASSGADAIERINVLLSNEKQVDLSFFKALQQLRFMEKQMQLFE 1316

Query: 328  -------NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK---L 376
                    LP   +R H E   ++T      +  P+   I  + +R  +++  G++   +
Sbjct: 1317 EGALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPKEDLRCLIVSRFGRRAGRM 1376

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---------- 426
            + AD + +E  VLA ++ +   L+      D +    +         V            
Sbjct: 1377 IEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLRVSLMTKEPYEDVIHKVKQVKDPHY 1436

Query: 427  -DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
               R   K       Y  G       A+TTGL+      L+         +  ++  R+ 
Sbjct: 1437 IQLRQQAKTFSFQRQYGAGTSTI---ATTTGLSETEVVRLIAAEE-----QHYKDLGRYY 1488

Query: 486  QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +                                             +E G   + + R  
Sbjct: 1489 RL----------------------------------------VTDCVEAGADRLLQLRTL 1508

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG-GKLTENIVQA 604
                +    +  ++L  P      +     ++       + + R   Y    L   IVQ 
Sbjct: 1509 DATSWPPTMRRMVLLTEPMH---YFVVPTGSKFDFTKDKKAVPRLKNYPVQGLAGEIVQI 1565

Query: 605  VSRDILA--EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS----- 656
            +   I+       N     + +V TVHD +  +  ++        +  +M+S        
Sbjct: 1566 MCGKIIRRFYAKRNYNDKAF-LVNTVHDCVWIDAHESVADEVMDDVSAIMSSTSEVISSL 1624

Query: 657  WA---KGLPLKAE 666
            W      +P KAE
Sbjct: 1625 WPGVKLDVPFKAE 1637


>gi|21929663|gb|AAM81964.1|AF445378_1 DNA polymerase I-like protein C [Trypanosoma brucei]
          Length = 1649

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 128/433 (29%), Gaps = 88/433 (20%)

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEA-MNSDGRLRGTLQFLGASRTGRWSGCVFPPQ- 327
            TP+ +    +R    RSA    + +    +      +  L F  A +  R+         
Sbjct: 1257 TPERLHPLLHRSLRGRSASSGADAIERINVLLSNEKQVDLSFFKALQQLRFMEKQMQLFE 1316

Query: 328  -------NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK---L 376
                    LP   +R H E   ++T      +  P+   I  + +R  +++  G++   +
Sbjct: 1317 EGALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPKEDLRCLIVSRFGRRAGRM 1376

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---------- 426
            + AD + +E  VLA ++ +   L+      D +    +         V            
Sbjct: 1377 IEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLRVSLMTKEPYEDVIHKVKQLKDPHY 1436

Query: 427  -DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
               R   K       Y  G       A+TTGL+      L+         +  ++  R+ 
Sbjct: 1437 IQLRQQAKTFSFQRQYGAGTSTI---ATTTGLSETEVVRLIAAEE-----QHYKDLGRYY 1488

Query: 486  QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +                                             +E G   + + R  
Sbjct: 1489 RL----------------------------------------VTDCVEAGADRLLQLRTL 1508

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG-GKLTENIVQA 604
                +    +  ++L  P      +     ++       + + R   Y    L   IVQ 
Sbjct: 1509 DATSWPPTMRRMVLLTEPMH---YFVVPTGSKFDFTKDKKAVPRLKNYPVQGLAGEIVQI 1565

Query: 605  VSRDILA--EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS----- 656
            +   I+       N     + +V TVHD +  +  ++        +  +M+S        
Sbjct: 1566 MCGKIIRRFYAKRNYNDKAF-LVNTVHDCVWIDAHESVADEVMDDVSAIMSSTSEVISSL 1624

Query: 657  WA---KGLPLKAE 666
            W      +P KAE
Sbjct: 1625 WPGVKLDVPFKAE 1637


>gi|283969442|gb|ADB54454.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
          Length = 144

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +DV     L +  D E   L+ E+     G   +    ++L+  LF    L +   
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGG-PFNIASTKELQKILFDNLKLRIVKK 59

Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310
           T+T   T   VL       P   ++ + R + ++     ++ L + +N   GR+  +   
Sbjct: 60  TQTGFSTDHEVLEELIGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHE 337
             A+ TGR S      QN+P   R   
Sbjct: 119 TIAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 308

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
            T ++ +R  TYG KL ENIV+A SRD+LAE M         IV+ +HD  V + P   +
Sbjct: 4   NTVKKWSRIETYGAKLVENIVKAASRDLLAEAMRRLEATSNSIVMHIHDFAVIDAP--AD 61

Query: 642 FNASMLYHLMTSNPSWAKGL 661
            +   +  +MT + +  K L
Sbjct: 62  RSLEKIVKIMTDDYNPRKDL 81


>gi|322815448|gb|EFZ24101.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 82/551 (14%), Positives = 159/551 (28%), Gaps = 78/551 (14%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            RW    + A  +G    L +         Q +   K L                    +
Sbjct: 333 ERWCEGTLKAEESGATMVLSSSSSGEMPLPQLLGRFKSLA---------------TLYAY 377

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
            EA+    E        T  +F  L  + S E  + +L + ++  G  V+  +  ++   
Sbjct: 378 YEAYLQSVESSG----ATGNVFMSLFTVCSLETRVSFLCEVMSYHGMFVEKNMLDSMVAD 433

Query: 211 VDVERTKLDQEL------------ESLTYGLVSSSRCLEKLKT-----WLFLETGLHLED 253
           ++ +   L ++             ES+    V +   ++ L++     W F +  +  + 
Sbjct: 434 LEQQIKALIEKGNVALQAMATASNESIDMETVDAWNLIKTLQSQFGGPWTFAKGNVEEQM 493

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
                      S        I +  +  R  + +++      +  +   RL    + + +
Sbjct: 494 QQLGAYLDEKQSCADSNVARIWLALHERREFKRSLM--EGFTKGASMHARLIAIPEEMAS 551

Query: 314 SRTGRWSGCVFPPQNLPRPSR----SHEELDQIITHLPTSITSDPDPL-----QIISDC- 363
           +  G  S     P ++    R     H +             S P          IS   
Sbjct: 552 TEGGGHS----NPHHVEAQYRLFFSVHPKWSVHHATTSRLFCSRPCLQTVAKNPPISRTA 607

Query: 364 ----------------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R       G  LV  D   IE RV+A ++G+   ++    G D
Sbjct: 608 PSSSPPVTIFSNPKWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRDGSD 667

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           +      R   +     VT   R   KV+   L Y  G ++           +  FA   
Sbjct: 668 VLAEMALRVMQLPRLTDVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKEITPFAE-- 725

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +   +  ++  + N C    +   +      F    C  +    R           +   
Sbjct: 726 QPPLSARQFLRSFNQCYPAVQGFLKSTRLRAFHEKRCATL-NGLRDLSGEPDGNRRK-QV 783

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-----LMLPSGRSLVYRDVGNNRSYLN 581
           A    I+ G A+I             +    L      L+L     LVY       S++ 
Sbjct: 784 AVALAIQGGAAVILHHAMVEVHEKRHELVPFLPAAAAALVLSVHDELVYAVPDGAVSFVA 843

Query: 582 TTTRQLTREYT 592
              +Q+  +  
Sbjct: 844 PKIKQILEQQA 854



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 602 VQAVSRDILAEGMMNATKAGYDIV-----------LTVHDEIVCETPDTD-EFNASMLYH 649
           +Q  +  IL   M+   +  +++V           L+VHDE+V   PD    F A  +  
Sbjct: 789 IQGGAAVILHHAMVEVHEKRHELVPFLPAAAAALVLSVHDELVYAVPDGAVSFVAPKIKQ 848

Query: 650 LMTS 653
           ++  
Sbjct: 849 ILEQ 852


>gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 727

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 63/208 (30%), Gaps = 29/208 (13%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L S E  +  +   +   G  VD+     +      +  +  +     + G   + +  +
Sbjct: 524 LKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWE-SAGERVNLQSPK 582

Query: 238 KLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           +L+  LF + GL     T++       ++ + L                         ++
Sbjct: 583 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTL---------------------YEHSLD 621

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
              ++  L   L+    ++  +    +    N PR  R H   +Q +       + DP+ 
Sbjct: 622 NDRANQFLGALLRHRETNKLKQIVQTLIDATN-PRDGRIHTTFEQTVAATGRLSSVDPNL 680

Query: 357 LQII-----SDCVRSCVIASEGKKLVVA 379
             I         +RS  +         A
Sbjct: 681 QNIPNRNAAGREIRSAFVPGRDTSRCSA 708


>gi|152003765|gb|ABB17229.2| DNA polymerase [Cyanophage S-CBP2]
          Length = 588

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 77/556 (13%), Positives = 147/556 (26%), Gaps = 128/556 (23%)

Query: 68  IVAHNSY-FERTVLKACFNLDIPIHRWICTLVL---------------ARSNGLPSAL-- 109
           +  HN   F+   ++  +    P        ++               ++   +P  L  
Sbjct: 57  LWGHNIIGFDVPAIQEIYPFFQPWESTYYDTLILSRLFFTDMLDRDLRSKPANMPGNLYG 116

Query: 110 --KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
                    +L   K E GK+L   +                         EYC+ DV  
Sbjct: 117 RHSLEAWGYRLGVLKSEYGKQLHGDWATYTPE-----------------MLEYCEQDVEA 159

Query: 168 TREIFKRLEPLSSK-------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              I K  +P   +       E +   +       G+  D+  A  L   +  E   L  
Sbjct: 160 NLPIVKLFQPKLEQYADAIKTEHDCALVMTRQEQAGFPFDIDKARALESKLRSELETLSD 219

Query: 221 ELES--------------------------LTYGLVSSSRCLEKLKTWLFLET-GLHLED 253
           E+ +                           T     S    + +  W F +  G    +
Sbjct: 220 EMRATFTFVAGKEFTPARNNATRGYITGCPFTKLTEFSPTSRDHI-AWAFQQHRGWEPIE 278

Query: 254 LTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
           +T+T      + VL++      +         +         N+ ++ +  DGR+     
Sbjct: 279 MTDTGKPKIDEEVLNAIGTEEAKKFGRILELQKHVGMLSEGKNSWLQMVEKDGRIHH--- 335

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCV 368
                       CV                    T    +    P+  Q+ S    R   
Sbjct: 336 -----------SCVLN------------------TATGRNAHMRPNLAQVPSGHEFRELF 366

Query: 369 IASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
              EG   V AD +G+E R LA      +  K        D++            A +  
Sbjct: 367 TPGEGYVQVGADASGLELRCLAHYLARFDGGKFGKVLLEGDIHT---------DLANIYG 417

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R  GK +   L Y GG       A     +  +    ++     +    A+       
Sbjct: 418 TDRKTGKTVTYCLIYGGGDTKLGLSAGEPKKSAASRGKKIRQAIMKDLDGFAQ--LITAV 475

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF-EQTIENGKAIIARKRRD 545
           +   +  +     G          R+ H+ ++ L         ++ +     ++     D
Sbjct: 476 QERAQSGVITGIDGRPI-----RMRKAHAALNYLLQSCGAVICKKWVVRSNELLTEAGID 530

Query: 546 VPLVYMKKDKNNLILM 561
              +    D+  L + 
Sbjct: 531 YTPLAFVHDEQQLAVR 546


>gi|309810235|ref|ZP_07704080.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169507|gb|EFO71555.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 214

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 94/279 (33%), Gaps = 91/279 (32%)

Query: 398 KLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
            L+AF+ G D++  T  + F ++   +VT   R   K +   + Y         +A   G
Sbjct: 8   MLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLG 64

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                 ++A+NF     E +P                          
Sbjct: 65  ISR----------------QEAQNFINNYFEQYP-------------------------- 82

Query: 517 VSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             ++ + +  A +   E G A  I  +RR +P ++ K           + RS        
Sbjct: 83  --QIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ 125

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
            R+ +N+                   +Q  + DI+   M+         K    ++L +H
Sbjct: 126 ERTAINSP------------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIH 167

Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           DE++ + P  + +   +++  +M         +PL A+ 
Sbjct: 168 DELLFDVPSEELDLIKTLVLKIMQQAAQ--LDVPLIADA 204


>gi|261334514|emb|CBH17508.1| DNA polymerase theta, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 846

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 107/366 (29%), Gaps = 94/366 (25%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR        Q +P+         Q  T++    +            +R     + G
Sbjct: 544 TSTGRLYCSRPNLQTVPKT-------AQKCTYVSPLTSDYGLLFTNPEWTMRHLYGPAPG 596

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIG 432
             L+  D   +E RVLA ++G++  ++   +  D+          +    QV    R   
Sbjct: 597 CVLLSFDFNQMELRVLAHLSGDELLIQHLSSEYDVLSAMTRHLTGLSDDEQVPPHLRETV 656

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV+   L Y  G    ++                                R        H
Sbjct: 657 KVVVYGLFYGMGLATMKE--------------------------------RVKILMDSAH 684

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           ++         + + +A+ Q++    +    L +A  +     +                
Sbjct: 685 SVPSSQRKITADTLLRAFHQRYPAAGKF---LTRARIRAFHEAR---------------- 725

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                  + L     L     GN R           R+++        I+Q  S  +   
Sbjct: 726 ------CVTLTGINDLSSEKDGNRR-----------RQHSIA-----RILQGSSSTLFQS 763

Query: 613 GMMNATKAGYDI-----------VLTVHDEIVCETPDT-DEFNASMLYHLM-TSNPSWAK 659
            M+   +  +DI           VL +HDE++    +   +  A  +  +M      ++ 
Sbjct: 764 AMVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVAREIKGIMVEQAQVFSL 823

Query: 660 GLPLKA 665
            +PL+ 
Sbjct: 824 RVPLRV 829


>gi|283969411|gb|ADB54439.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
          Length = 144

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 7/147 (4%)

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +DV     L +  D E   L+ E+     G   +    ++L+  LF    L +   
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGG-PFNIASTKELQKILFDNLKLRIVKK 59

Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310
            +T   T   VL       P   ++ + R + ++     ++ L + +N   GR+  +   
Sbjct: 60  NQTGFSTDHEVLEELVGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHE 337
             A+ TGR S      QN+P   R   
Sbjct: 119 TIAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|157866599|ref|XP_001687691.1| mitochondrial DNA polymerase I protein C [Leishmania major strain
            Friedlin]
 gi|68125305|emb|CAJ03123.1| putative mitochondrial DNA polymerase I protein C [Leishmania major
            strain Friedlin]
          Length = 1548

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/429 (14%), Positives = 115/429 (26%), Gaps = 80/429 (18%)

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQ- 327
            TP  +     R    +SA    + +          +   L F  A +  R++        
Sbjct: 1156 TPAKLHPLLRRFLRGKSASSGADAMERVTMLLSPYKTIDLSFFSALQQLRFTEKKLQLFE 1215

Query: 328  -------NLPR-PSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGK 374
                    LP    R H EL   +T      +  P+   I     +   + S   A    
Sbjct: 1216 EGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFSAQG-- 1273

Query: 375  KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK-------- 426
             ++ AD + +E  VLA +  +   ++      D +    +         V +        
Sbjct: 1274 MMIEADYSQLEVVVLAALCRDPRMMQELRDNIDFHCLRVSLMTKEPYEDVVRKAKVEKDP 1333

Query: 427  ---DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                 R   KV      Y  G         TTGL       L+                 
Sbjct: 1334 QYIQLRQQAKVFSFQRQYGAGVSTIST---TTGLTEQEVDRLIVAEE------------H 1378

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              +E    +++    +    +R+ +  R      + LWN       + +   + +     
Sbjct: 1379 HYKELSKYYSLVTRCVEAGADRLLR-LRTLD---TSLWN---ANIRRVVMLTEPMYYFVV 1431

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL----NTTTRQLTREYTYGGK--L 597
                     +D+ ++       R   Y   G     +        R+  R+  YG K  L
Sbjct: 1432 PTGSKFDFTRDRKSVP------RLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAFL 1485

Query: 598  TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
               +      D +                 V DE+  +           +  L    P  
Sbjct: 1486 VNTV-----HDCVWVDAHK----------CVADEVCADLARIMGHTQEAIAAL---WPDM 1527

Query: 658  AKGLPLKAE 666
               +P KAE
Sbjct: 1528 KLDVPFKAE 1536


>gi|270585837|ref|ZP_06221408.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318509|gb|EFA29597.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 141

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 36/173 (20%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  +D       +  +    T L+++  +L  G   +    ++L+  LF + GL +
Sbjct: 1   MERTGVLIDSDALFMQSNEIASRLTALEKQAYALA-GQPFNLASTKQLQEILFDKLGLPV 59

Query: 252 ----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
                    +T + VL            +  +R                           
Sbjct: 60  LQKTPKGAPSTNEEVLEELAYSHELPKILVEHR--------------------------- 92

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
               G S+         P     +  R H    Q +T      +SDP+   I 
Sbjct: 93  ----GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIP 141


>gi|71755431|ref|XP_828630.1| DNA polymerase theta [Trypanosoma brucei TREU927]
 gi|70834016|gb|EAN79518.1| DNA polymerase theta, putative [Trypanosoma brucei]
          Length = 896

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 107/366 (29%), Gaps = 94/366 (25%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR        Q +P+         Q  T++    +            +R     + G
Sbjct: 594 TSTGRLYCSRPNLQTVPKT-------AQKCTYVSPLTSDYGLLFTNPEWTMRHLYGPAPG 646

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIG 432
             L+  D   +E RVLA ++G++  +K   +  D+          +    QV    R   
Sbjct: 647 CVLLSFDFNQMELRVLAHLSGDELLIKHLSSEYDVLSAMTRHITGLSDDEQVPPHLRETV 706

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV+   L Y  G    ++                                R        H
Sbjct: 707 KVVVYGLFYGMGLATMKE--------------------------------RVKILMDSAH 734

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           ++         + + +A+ Q++    +    L +A  +     +                
Sbjct: 735 SVPSSQRKFTADTLLRAFHQRYPAAGKF---LTRARIRAFHEAR---------------- 775

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                  + L     L     GN R           R+++        I+Q  S  +   
Sbjct: 776 ------CVTLTGINDLSSEKDGNRR-----------RQHSIA-----RILQGSSSTLFQS 813

Query: 613 GMMNATKAGYDI-----------VLTVHDEIVCETPDT-DEFNASMLYHLM-TSNPSWAK 659
            M+   +  +DI           VL +HDE++    +   +  A  +  +M      ++ 
Sbjct: 814 AMVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVARKIKGIMVEQAQVFSL 873

Query: 660 GLPLKA 665
            +PL+ 
Sbjct: 874 RVPLRV 879


>gi|282598885|ref|YP_003358435.1| N4 gp39-like protein [Pseudomonas phage LIT1]
 gi|259048645|emb|CAZ66294.1| N4 gp39-like protein [Pseudomonas phage LIT1]
          Length = 871

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 90/624 (14%), Positives = 176/624 (28%), Gaps = 139/624 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           +  D E  S + +   G         +    F +++H      C +  ++    K     
Sbjct: 186 ISCDIEGFS-LSMFDSG---------IATIGFAWNEHDAVQIQCDYREMIQDENKHHGYY 235

Query: 61  ---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG--EA 115
               E  +V                     I         VL  +  +   L   G    
Sbjct: 236 EPNAEMREVLKWFF---------TEYPGRIIYHRANHDVKVLIYTLFMEHDLDKEGMHRG 286

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNK--PNHREAWRL-------------FGEY 160
           L++ + +M++ K +IA      T +  Y        H   W                 +Y
Sbjct: 287 LEIMTPRMDDTK-IIAYLALNSTADVSYSLKDLGQEHAGNWAQDDIKDIRLITLDDLMKY 345

Query: 161 CKGDVTVTREIFKRLEP--LSSKEQELWY--------LDQTINDRGYCVD---------- 200
              D   T  +  +  P  +  ++  L++        L   +   G  ++          
Sbjct: 346 NAVDAVTTVWVKNKYYPIMVQDQQDALYHGLFKDSLDLIIQMELVGMPMNPRKITEVNTE 405

Query: 201 -----------------VALAHTLNQIVDVERT--KLDQELESLTYG--LVSSSRCLEKL 239
                            VA    L Q  ++E+   KL      L+    +  +     ++
Sbjct: 406 LNNLRDGYHNTVMSHPAVAKVEVLIQTSEMEKANAKLKTIQHPLSKFSHIRFNPNSGPQV 465

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L     L + D+T T            +   ++   N ++A          L++A+ 
Sbjct: 466 ARLLHEVLDLPVLDVTAT-------KQPSTSGGTLKKLLNHIKA-----EPYKDLIQALM 513

Query: 300 SDGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             G + +    F+ A + GR                 H   +   T      +SDP+   
Sbjct: 514 DLGAVEKVISAFMPAFKAGRMKADGM--------MYLHGSFNLGGTISGRLSSSDPNLQN 565

Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
           +         V+S   A  G     AD A +E R+ A +  +  K+K +  G D +    
Sbjct: 566 LPAGSTYGKLVKSLFCAPPGFLFGGADFAALEDRINALLTQDPNKIKVYTDGYDGHSM-- 623

Query: 414 ARSFNVAPA----------------QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            R+F   P                 +V  D R+  K     L Y G    +  +    G 
Sbjct: 624 -RTFAFWPDKCDGIVDTVDSINSIQKVYPDLRSKAKTPHFLLQYGGS---WMGLVRQVGF 679

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +      +         +               + A +  ++  A   ++       S +
Sbjct: 680 SDEEAQEI------ETNYNKLYRVSNEWVAGEIDKATKTGYVELAFN-LRLRTPLLGSTI 732

Query: 518 SELWNELHQAFEQTIENGKAIIAR 541
             L     +A  ++   G A+  +
Sbjct: 733 LGLKATPKEAAAESRSAGNAVSGQ 756


>gi|158345163|ref|YP_001522870.1| putative DNA polymerase [Enterobacteria phage LKA1]
 gi|114796459|emb|CAK24997.1| putative DNA polymerase [Pseudomonas phage LKA1]
          Length = 791

 Score = 90.6 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 35/361 (9%)

Query: 235 CLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +++L + +  +   H +D  +    T  + +      +   + +V     +    A  K
Sbjct: 353 WIQQLPSNIQEKFEYHGKDSRKNGDWTGARLLCDDKTPVYSTSSEVLEVLAKHGFEAADK 412

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L+ +      +G    ++++       +  G     Q +      H  L+   T      
Sbjct: 413 LSRMASLEKDNGTYYRSVEYDKEGNVKKVKGM---LQYVQPDGIIHHSLNLCATATGRLS 469

Query: 351 TSDPDPLQIISD---CVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +S P+   +  D    V+    +  G   +++  D + +E  +LA ++G++  L+    G
Sbjct: 470 SSYPNLQNLPRDGTSRVKEMFESRFGTAGRIIEVDYSALEVVMLAALSGDENLLEQLVKG 529

Query: 406 EDLYVTTYARSFNVAPAQVT---------------KDQRAIGKVMELALGYQGGAKAFQK 450
            D++    A        +V                K  R   K    A  Y   A   + 
Sbjct: 530 TDMHCLRLAAKLGEPYEEVLHKAVENQAHPEHKRYKQMRTDIKPPSFAAQYGASA---EG 586

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +A  TG+++      ++T +    +  +  F   ++            +    +    AW
Sbjct: 587 IAYATGVSVEYAKEFLETEA--RLFPQSIAFRGVVRAEVERTGELPEGLHREQDEATGAW 644

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV---YMKKDKNNLILMLPSGRS 567
           R       +       +F Q  +  K +  R           Y  + +   ++ + +GR 
Sbjct: 645 RIYRRGYWQAPGGARYSFRQWPQWNKELRQRVMDYKDTQIANYWCQGEAFYLMAVSAGRV 704

Query: 568 L 568
           L
Sbjct: 705 L 705


>gi|220913904|ref|YP_002489213.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
 gi|219860782|gb|ACL41124.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
          Length = 590

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 82/302 (27%), Gaps = 65/302 (21%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
                L  EL  L      +    ++L   L    G+ ++  ++          K L   
Sbjct: 232 ARLEALAAELRRLLGSPALNPDSPQELIRALH-RNGIEVKSTSK-------WELKDLPHP 283

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            I       + SR       + ++A  + GR R                           
Sbjct: 284 VIGPLLEYKKLSRLHTANGWSWLDAWVAGGRFR--------------------------- 316

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                E            +     LQ I   VR  V A  G KL+VAD + +E RVL  +
Sbjct: 317 ----PEYVVGGVVSGRWASRGGGALQ-IPRQVRGAVHADPGYKLIVADASQLEPRVLVAL 371

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A +    +A    +DLY    A+ F           RA  KV  L   Y   +    ++ 
Sbjct: 372 ARDSVMAEAARD-QDLYAGIAAKGFGGD--------RAKAKVALLGAMYGATSGESGRLM 422

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                 +  A +F                 +G +     + W Q
Sbjct: 423 ----------------PQLARTYPRAVDFVEQAARAGEAGGTVTTRLGRSSPPPSERWYQ 466

Query: 513 KH 514
             
Sbjct: 467 SQ 468


>gi|289806032|ref|ZP_06536661.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 142

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 41/167 (24%)

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVL 263
           ++ + +   +L+++   +  G   +    ++L+T LF + G+     T     +T + VL
Sbjct: 8   SEEITLRLAELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 66

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +   R                               G ++        
Sbjct: 67  EELALDYPLPKVILEYR-------------------------------GLAKLKSTYTDK 95

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365
            P    P+  R H    Q +T      ++DP+   I         +R
Sbjct: 96  LPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIR 142


>gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM]
          Length = 397

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 114/369 (30%), Gaps = 99/369 (26%)

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----KEQELWYL 188
           F KG+  +    R  P+  +       YC  DV VT ++++ L            EL + 
Sbjct: 28  FSKGDHTDW--TRLTPDMEK-------YCVRDVEVTEKLYQHLLKELDGFDVSSIELEHE 78

Query: 189 DQTINDR----GYCVDVALAHTLNQIVDVERTKLDQELESL------------------- 225
            Q I  R    G+ +D+  AH L  ++  ++ +L+ +++                     
Sbjct: 79  VQRITARQVRLGWLLDLKYAHQLLALLKEKKYELEDKVQDTFRPLPTFIREVTPRCKKDH 138

Query: 226 ---TYGL--------------------VSSSRCLEKLKTWLFLETGLHLEDLTETT---C 259
                GL                      +    +++  +L    G      TE      
Sbjct: 139 TLSAVGLKFLGEQWSDVCGPFSRVDCPEFNLGSRQQIGRYL-QHFGWKPTKFTEKGHAIV 197

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
              + S     P+A  +    M   R  V ++ + +EA + DGR+ G +   GA  TGR 
Sbjct: 198 DESVLSKITDIPEAQLIAEYLMVQKR--VAQIQSWIEAADDDGRVHGRVNTNGAV-TGRM 254

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           +                                 P          RSC    EG  LV  
Sbjct: 255 THSEPNL------------------------AQVPAVRAPYGKECRSCWTVPEGYSLVGF 290

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D +G+E R+LA   G++        G D++         +       + R   K    A 
Sbjct: 291 DASGLELRMLAHYMGDREYTNEILHG-DIHTAN-QHLAGL-------ESRDQAKTFIYAF 341

Query: 440 GYQGGAKAF 448
            Y  G    
Sbjct: 342 LYGAGDAKL 350


>gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1]
 gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1]
          Length = 580

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 124/459 (27%), Gaps = 108/459 (23%)

Query: 61  LENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAVGEA 115
           L       + HN   F+   +K  +   IP+     TLV++R          +L A+   
Sbjct: 42  LAKQVTLWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGHSLDALSGN 101

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV----TVTREI 171
            K+              F                          YCK DV     V  ++
Sbjct: 102 EKIDFHD----------FSTYTPE-----------------MLAYCKQDVAINEKVYLQL 134

Query: 172 FKRLEPLSSKEQELWYLDQTI----NDRGYCVDVALAHTLNQIVDVERTKLDQELES--- 224
            + L        +L +  Q I       G+ +D  +A  +      E  +++ E++    
Sbjct: 135 KEELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRETNRIEAEIKEFMV 194

Query: 225 -----------------------------------LTYGLVSSSRCLEKLKTWLFLETGL 249
                                                     +     ++   L    G 
Sbjct: 195 PIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPAQVNKRL-DRLGW 253

Query: 250 HLEDLTETT-----CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
                T++      C   L++     P+A++             L    L ++    GR+
Sbjct: 254 KPTVKTKSGNSYKICPENLATIPDTAPEAVKGLKAWKVLETRWKLAQEWLQKS-QETGRV 312

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
            G +   GA  T R +       N+P  S  H +   +                      
Sbjct: 313 HGRVILTGAV-THRAAHQGPNMANIP--SVPHGKDGILWKMEGMY-----------GAEC 358

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423
           R      EGK LV  D AGI+ RVLA    +    +    G D++       FN     +
Sbjct: 359 RQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDPIYTEQVIDG-DIHT------FNKEALGR 411

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             KD R   K    A     G      +        N  
Sbjct: 412 YCKD-RPTAKTFIYAFLLGAGTGMIASILGCNNRQANEA 449


>gi|194432078|ref|ZP_03064367.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
 gi|194419607|gb|EDX35687.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
          Length = 72

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 4  LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
          L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+  
Sbjct: 6  LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 64

Query: 64 TDVTI 68
           +  +
Sbjct: 65 PETLM 69


>gi|71662488|ref|XP_818250.1| DNA polymerase theta (polymerase domain only) [Trypanosoma cruzi
           strain CL Brener]
 gi|70883490|gb|EAN96399.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 86/259 (33%), Gaps = 13/259 (5%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
           +R       G  LV  D   IE RV+A ++G+   ++    G D+      R   +   A
Sbjct: 624 LRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRGGSDVLAEMALRVMQLPRLA 683

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT   R   KV+   L Y  G ++         L+  T     +   +  ++  + N C
Sbjct: 684 DVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQ--LHKETTPSAEQPPLSARQFLRSFNQC 741

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               +          F    C       R           +   A    I+ G A+I   
Sbjct: 742 YPAVQGFLRSTRLRAFHEKRC-TTLNGLRDLSGEPDGNRRK-QMAVALAIQGGAAVILHH 799

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                +V + + ++ L+  LP+    +   V +   Y    +           K+ + + 
Sbjct: 800 ----AMVEVHEKRHELLPFLPAAAVALVLSVHDELVYAVPDSA----VSIVAPKIKQILE 851

Query: 603 QAVSRDILAEGMMNATKAG 621
           Q  +   L+  +  + KAG
Sbjct: 852 QQAAALSLSVPLPVSMKAG 870


>gi|296270208|ref|YP_003652840.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
 gi|296092995|gb|ADG88947.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
          Length = 538

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 92/299 (30%), Gaps = 66/299 (22%)

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
            R +   +  S  +G   +    ++L    F   G+ L        +RV        P  
Sbjct: 201 ARLQALADEISAAFGHPVNPDSPQQLLK-AFKAAGIDLPSTRSHVLERV------DHPAV 253

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   +  +                   RL     F G +   +W           R  
Sbjct: 254 KPLLEYKELS-------------------RLHS---FYGWAWAAQWV----------RGG 281

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           R H E            TS    LQ I   +R  V+A +G  LVVAD A +E RVLA M+
Sbjct: 282 RFHPEYVVGGVVSGRWATSGGGALQ-IPKVMRRAVVADQGWTLVVADAAQLEPRVLAAMS 340

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+    +A     DLY      +F           R   K+  L+  Y G +    ++ +
Sbjct: 341 GDAALARAAGE-ADLYSALA-EAFG--------GSRESAKIAMLSAMYGGTSGDAPRLLA 390

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                              + +  A  F         E  +   ++G  C    + WR+
Sbjct: 391 VM----------------RQRFPRAYAFVEEAARAGEEGRVVRSWLGRTCPPPSQRWRE 433


>gi|322504483|emb|CAM37559.2| putative mitochondrial DNA polymerase I protein C [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1628

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/410 (15%), Positives = 115/410 (28%), Gaps = 78/410 (19%)

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQ- 327
            TP+ +     R    +SA    + +          +   L F  A +  R++        
Sbjct: 1236 TPEKLHPLLRRFLRGKSASSGADAMERVTTLLSPYKTVDLSFFSALQQLRFTEKKLQLFE 1295

Query: 328  -------NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKK--L 376
                    LP    R H EL   +T      +  P+   I  +  +R  +++  G +  +
Sbjct: 1296 EGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGMM 1355

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---------- 426
            + AD + +E  VLA +  +   ++      D +    +         V +          
Sbjct: 1356 IEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKAKVKKDPQY 1415

Query: 427  -DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
               R   KV      Y  G         TTGL       L+                   
Sbjct: 1416 IQLRQQAKVFSFQRQYGAGISTIST---TTGLTEQEVDRLIVAEE------------HHY 1460

Query: 486  QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +E    +++    +    +R+ +  R      +  WN   +      E            
Sbjct: 1461 KELSKYYSLVTRCVEAGADRLLR-LRTLD---TSCWNTNIRRVVMLTE------------ 1504

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
             P+ Y      +        +S+            N   +           L   IVQ +
Sbjct: 1505 -PMYYFVVPTGSKFDFTRDRKSVPRLK--------NYPVQG----------LAGEIVQIM 1545

Query: 606  SRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNA-SMLYHLMT 652
               I+ E        G    +V TVHD +  +   +      + L  +M 
Sbjct: 1546 CGAIVRE-FYQKRNYGEKAFLVNTVHDCVWVDAHKSVADEVRADLARIMG 1594


>gi|154334253|ref|XP_001563378.1| mitochondrial DNA polymerase I protein C [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1628

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/410 (15%), Positives = 115/410 (28%), Gaps = 78/410 (19%)

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQ- 327
            TP+ +     R    +SA    + +          +   L F  A +  R++        
Sbjct: 1236 TPEKLHPLLRRFLRGKSASSGADAMERVTTLLSPYKTVDLSFFSALQQLRFTEKKLQLFE 1295

Query: 328  -------NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKK--L 376
                    LP    R H EL   +T      +  P+   I  +  +R  +++  G +  +
Sbjct: 1296 EGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGAQGMM 1355

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---------- 426
            + AD + +E  VLA +  +   ++      D +    +         V +          
Sbjct: 1356 IEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKAKVKKDPQY 1415

Query: 427  -DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
               R   KV      Y  G         TTGL       L+                   
Sbjct: 1416 IQLRQQAKVFSFQRQYGAGISTIST---TTGLTEQEVDRLIVAEE------------HHY 1460

Query: 486  QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +E    +++    +    +R+ +  R      +  WN   +      E            
Sbjct: 1461 KELSKYYSLVTRCVEAGADRLLR-LRTLD---TSCWNTNIRRVVMLTE------------ 1504

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
             P+ Y      +        +S+            N   +           L   IVQ +
Sbjct: 1505 -PMYYFVVPTGSKFDFTRDRKSVPRLK--------NYPVQG----------LAGEIVQIM 1545

Query: 606  SRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNA-SMLYHLMT 652
               I+ E        G    +V TVHD +  +   +      + L  +M 
Sbjct: 1546 CGAIVRE-FYQKRNYGEKAFLVNTVHDCVWVDAHKSVADEVRADLARIMG 1594


>gi|312377443|gb|EFR24272.1| hypothetical protein AND_11228 [Anopheles darlingi]
          Length = 2035

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 82/532 (15%), Positives = 154/532 (28%), Gaps = 121/532 (22%)

Query: 149  NHREAWRLFGEYCKGDVTV---TREIFKRLEPL-------SSKEQELWYLDQTINDRGYC 198
            +H              V V    R + K L+ +        S+E  +  +       G+ 
Sbjct: 1559 HHHSPIAARQRAATESVIVSHLMRPVRKLLQQVAGLEACFQSREMPVHVVLARSEVVGFP 1618

Query: 199  VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
            VD      L + +   R ++  +   L  G          +   L L            T
Sbjct: 1619 VDRTALGALIERLKASRERIATDARLLNGGRKLDFGSSRAVAAALRLAASRERPR----T 1674

Query: 259  CQRVLSSNKKLTPQAIQVFNNRMR---ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
             ++VL       P A  V   R      +R+      T+   ++++ R+ G       + 
Sbjct: 1675 VRQVLERLDN--PLAALVIAYRKIDSNLARTIEPLYRTIQ--LSAESRVHGRSHCF--TS 1728

Query: 316  TGRWSGCVFPPQNL------PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
            TGR +      Q +      P P        +                       RS   
Sbjct: 1729 TGRITMHEPNLQTVVKDFTVPAPLAGGMRERRTTDEEEHFSC-------------RSTFA 1775

Query: 370  ASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF------------ETGEDLYVTTYARS 416
             ++  + L+ AD   +E  +L  ++ ++  L A                +D++ +  AR 
Sbjct: 1776 CNDTTRVLLSADFCQLELCILTHLSQDRRLLAALDGSAVADGAGSRRKPQDVFRSLAARW 1835

Query: 417  FNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
              +   ++V+ + R   K +   + Y  GA+A   MA+   +   +   L+      E++
Sbjct: 1836 HQLGDASEVSDELRTRTKAIVYGVIYGMGARA---MAAELQMEEESARSLM------EQF 1886

Query: 476  EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
              +    R  QE       +  +I T   R     R+    + +              + 
Sbjct: 1887 HRSYPDIRRYQERVIRLTRQLGYIETLTGR-----RRYLPAIGQ----------AATADP 1931

Query: 536  KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
             A    +R+ V         + L                      N   R       Y  
Sbjct: 1932 AARAEAERQAVCTTIQGSAADILK---------------------NAIVRMERNLRKYA- 1969

Query: 596  KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
                        D+L  G +         VL +HDE+V E P       + +
Sbjct: 1970 ------------DVLDVGAIQL-------VLHLHDELVYELPRAQLPKVAKI 2002


>gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
 gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
          Length = 640

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 86/567 (15%), Positives = 188/567 (33%), Gaps = 95/567 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVIL-------FAFGFDDHPV-ELWDCVHDPV 52
           M    +D ET +     K  +    +   +          A       V ++ +   + +
Sbjct: 1   MKINSLDIETEAVDPAEK--LYAALQPWRLRQGRSRITSIAVCRPGFTVDQIVNRGDNTL 58

Query: 53  MPQVLKEALENT-DVTIVAHNSYFER----------------TVLKAC-FNLDIPIHRWI 94
             + + + L++  +  + AHN+ F+                  VLK   +     + +W+
Sbjct: 59  WLREMIDLLDSVGNDVVYAHNALFDIAFMIAQLQPRRMGAIPDVLKRVKWRDTGLLTKWL 118

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                  +     +L  +     L   +M         F K    + +   + P + E  
Sbjct: 119 INGQQPETMRFSYSLANLVATF-LKDDEMTPF------FVK-MKSQGVSPGDNPEYCEK- 169

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQE---LWYLDQTINDR-----GYCVDVALAHT 206
                  + D  +T ++  +L+   SKEQ    L   D  +        G  +D      
Sbjct: 170 -----RGELDAIMTLKLALKLQAHMSKEQRTGFLTEQDCLLPVANSWIMGIRIDREQVRR 224

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
            ++     +T + ++L  L  G+       ++L   LF E  L +   T +      +  
Sbjct: 225 NDKFFSESKTAIAKKL-GLDEGIF---TSTKRLPDLLFKEWLLPVISKTPSGNPSCNADT 280

Query: 267 KKLT------------PQAIQVFNNRMRASRSAVLKLNTLVEAMN--SDGRLRGTLQFLG 312
            KL                + +     + S      + +++EA+    DG +  + +  G
Sbjct: 281 LKLLQYQLNEAGNTEMADKLGLILEAKQYSTLHSKYVKSMIEALEHTGDGYIYASPRIFG 340

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP-DPLQIISDCVRSCVIAS 371
            + TGR++            + + ++ +          ++     +      VR  +IA 
Sbjct: 341 -TYTGRFTYS---------STTNGKDYEDDNAKTKKFKSAIAVHQIPRRDKMVRKSMIAP 390

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT------ 425
           EG ++  AD +G E+R++A  + +   ++ F    + +  T A       +         
Sbjct: 391 EGYEIYEADASGQESRLMALRSKDPVMIEIFSKDMNFHSMTGASIIGEDYSDFQVKYKAE 450

Query: 426 -------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
                   +QR +GK+  L+  Y+ G KA  + A    L+ +TF  +       + +   
Sbjct: 451 GDEGGYYTEQRQLGKLTNLSCNYRIGGKALSQKA---FLDYDTFLTVQTGLFLVQTFNRT 507

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACER 505
                   E+    + +  +  T   R
Sbjct: 508 YKGVPQYWEDVVWESRKQGYTETFGGR 534


>gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 593

 Score = 87.5 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 87/518 (16%), Positives = 160/518 (30%), Gaps = 79/518 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWIC 95
            D+  V   D +  P +   +K   E   V    HN   F+   +   +   +  H+   
Sbjct: 27  TDEATVYA-DQIGFPPIKDAIKRLKEADRVVF--HNGQGFDIHAINHFYPGTLTPHQVWD 83

Query: 96  TLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           TLV AR         +L   G+ L     + ++      RF K                 
Sbjct: 84  TLVAARLLNPSERANSLDDWGKRLGEYKGEFKDFS----RFSKE---------------- 123

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-------DRGYCVDVALAH 205
                 EY + DV VTR+++ +LEP      + + L+             G+ ++   A 
Sbjct: 124 ----LVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKAR 179

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
            L   +  E + +++EL+      V   R +   +                         
Sbjct: 180 GLEAELRQEASDIERELQE-----VFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLK 234

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW-SGCVF 324
            +   P +     +R+        K  T   +   D  +   L++  A    R+      
Sbjct: 235 LEIFNPGSRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLKYPEAKVLNRYLRITKL 294

Query: 325 PPQN-----------LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD--CVRSCVIAS 371
             Q                SR H  ++ I           P+  Q+      +R C  A 
Sbjct: 295 LGQVVDGENGWLKLVNEETSRVHGAVNTIGAATGRCSHFKPNMAQVDKKDLRMRECWEAR 354

Query: 372 EGKKLVVADLAGIEARVLAWMAGE-------QWKLKAFET-GEDLYVTTYARSFNVAPAQ 423
            G  LV  D  G+E R+LA   G+       +  L+  +  G D +         +    
Sbjct: 355 PGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLEGSKEAGTDAHT--------INQKA 406

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKM----ASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           V   +R   K +  AL Y  G     ++    A   G+NL      +   +  +  +  +
Sbjct: 407 VGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNKKALGAKARKDLAKGMK 466

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
              + + +   +   +    G   +  +   R +HS  
Sbjct: 467 GLDKLVDKVKDKAGKKKYIQG--LDGRRIYVRSEHSAF 502


>gi|302535235|ref|ZP_07287577.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
 gi|302444130|gb|EFL15946.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
          Length = 559

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 101/351 (28%), Gaps = 95/351 (27%)

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             + EA+    R R  L    A   G   G   PP+  PR    H  L       P    
Sbjct: 255 PGVQEAVPDLHRPRLVL----ARGLGP--GRPLPPRVHPRRH-PHRPLGHPTAAGPCRS- 306

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R  V+A  G +LVVAD   +E RVLA ++ +   ++     EDLY  
Sbjct: 307 ---------PKVIRRAVVADPGWRLVVADADQMEPRVLAAISRDPAFMEVAGRPEDLYTA 357

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              + F           R   K+  L   Y   +    K  +                  
Sbjct: 358 VSRQGF--------SGDRDKAKIAVLGAVYGQTSGDGLKNLAAL---------------- 393

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +  A  +         E  +   ++G  C     A     + + +      Q  E+ 
Sbjct: 394 RRRFPRAVAYVDDAARAGEEGRLVRTWLGRTCPPPVGAAEADEAGIPQ-----EQGPERA 448

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                                   + G   SY +  TR      
Sbjct: 449 DS-------------------------------------AETGWTPSYASANTRA----- 466

Query: 592 TYGGKLTEN-IVQAVSRD--ILAEGMMNATKAG--YDIVLTVHDEIVCETP 637
              G+ T N +VQ  + D  +L    +    AG   ++V   HDE++   P
Sbjct: 467 --RGRFTRNFVVQGSAADWALLMLAALRQATAGMRAELVFFQHDEVIVHCP 515


>gi|83286526|ref|XP_730200.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489855|gb|EAA21765.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 1103

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 131/411 (31%), Gaps = 78/411 (18%)

Query: 264  SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR-LRGTLQFLGASRTGRWSGC 322
               K    Q I        + +     +  L + +  + + +   L  LGAS TGR S  
Sbjct: 756  EKEKDKIKQIINNIKLYRESKKLFQNYIENLPKYIQKNTKKIHCNLNQLGAS-TGRLSCD 814

Query: 323  VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
                QN+      H +    I+       +  + + I  + +++  I    K L+  D  
Sbjct: 815  QPNLQNI------HSKFRCTIS----LKLNQLNSISIKKENIKNTSI---NKNLLTFDYK 861

Query: 383  GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
             +E  V+A+++ +   LK      D++V T    FN    ++TK+ R + K +   + Y 
Sbjct: 862  QMELFVMAYLSFDNQLLK-MLNNSDVFVETAKILFNT--NEITKELRRMTKTVIYGILYG 918

Query: 443  GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                    +A    ++ N    L+             N  ++MQ+               
Sbjct: 919  QSEN---GLAKNLLISENFAKSLIDNFFNF-----YPNVYKFMQKQ-------------- 956

Query: 503  CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             + + K     ++ +           ++ ++ G     R   + P +           +L
Sbjct: 957  -KILVKNMNSVYTLIGR---------KRIVDLGIKNKYRISMNTP-IQGCSADIMKFALL 1005

Query: 563  PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
               + + + +  N    +N   +      +   K    I                     
Sbjct: 1006 SCNKIISFDNNINK--DINIFLKMNNINVSLLKKYQNYI------------------KST 1045

Query: 623  DIVLTVHDEIVCETPDTDEFNASMLYHLMTS-------NPSWAKGLPLKAE 666
             ++L +HDE++ E  +    +   +                +   LP+KAE
Sbjct: 1046 KLILQIHDELLFECDENGTHDIINILKPFGKFDKFDNILRDFNLKLPIKAE 1096


>gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score = 87.1 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 87/518 (16%), Positives = 160/518 (30%), Gaps = 79/518 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWIC 95
            D+  V   D +  P +   +K   E   V    HN   F+   +   +   +  H+   
Sbjct: 14  TDEATVYA-DQIGFPPIKDAIKRLKEADRVVF--HNGQGFDIHAINHFYPGTLTPHQVWD 70

Query: 96  TLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           TLV AR         +L   G+ L     + ++      RF K                 
Sbjct: 71  TLVAARLLNPSERANSLDDWGKRLGEYKGEFKDFS----RFSKE---------------- 110

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-------DRGYCVDVALAH 205
                 EY + DV VTR+++ +LEP      + + L+             G+ ++   A 
Sbjct: 111 ----LVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKAR 166

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
            L   +  E + +++EL+      V   R +   +                         
Sbjct: 167 GLEAELRQEASDIERELQE-----VFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLK 221

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW-SGCVF 324
            +   P +     +R+        K  T   +   D  +   L++  A    R+      
Sbjct: 222 LEIFNPGSRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLKYPEAKVLNRYLRITKL 281

Query: 325 PPQN-----------LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD--CVRSCVIAS 371
             Q                SR H  ++ I           P+  Q+      +R C  A 
Sbjct: 282 LGQVVDGENGWLKLVNEETSRVHGAVNTIGAATGRCSHFKPNMAQVDKKDLRMRECWEAR 341

Query: 372 EGKKLVVADLAGIEARVLAWMAGE-------QWKLKAFET-GEDLYVTTYARSFNVAPAQ 423
            G  LV  D  G+E R+LA   G+       +  L+  +  G D +         +    
Sbjct: 342 PGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLEGSKEAGTDAHT--------INQKA 393

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKM----ASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           V   +R   K +  AL Y  G     ++    A   G+NL      +   +  +  +  +
Sbjct: 394 VGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNKKALGAKARKDLAKGMK 453

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
              + + +   +   +    G   +  +   R +HS  
Sbjct: 454 GLDKLVDKVKDKAGKKKYIQG--LDGRRIYVRSEHSAF 489


>gi|282599434|ref|YP_003358324.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
 gi|259048533|emb|CAZ66183.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
          Length = 875

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 85/594 (14%), Positives = 166/594 (27%), Gaps = 147/594 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WD--------------CV 48
           L  D E  S        +  +   +  I FA+      V++  D              C 
Sbjct: 190 LTCDIEAFS--------LSMFDSGIATIGFAWS-QHDAVQIQVDYQEMAEPSGGLYGYCE 240

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
            +  M  VL+   E     ++ H + F+  VL     +   + +           G+   
Sbjct: 241 TNEPMRDVLRWFFEQYKGQLIYHKANFDVKVLIYQLYMAHDLDKV----------GMLRG 290

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK--PNHREAW------------ 154
           L+ +   +        +  +++A      T    Y        H   W            
Sbjct: 291 LEIMCRGM--------QDTKVVAYLALNSTSSPSYSLKDLGQEHAGDWSQGDDIKDIRKI 342

Query: 155 --RLFGEYCKGDVTVTREIFKRLEPL--SSKEQELWYLD----QTINDRGYCVDVALAHT 206
                 EY   D   T  ++ +  P+  + K+ +L++      Q +      V + +   
Sbjct: 343 PLDQLMEYNAVDAVTTMYVWNKYYPVMVAEKQDQLYHGLFMESQEMIIHTELVGMPMCPK 402

Query: 207 LNQIVDVERTKL--------------------------------DQELESLTYG---LVS 231
               V+ E TKL                                 + ++        +  
Sbjct: 403 RLAEVETELTKLRDGYFNTIMQDPMVHRTTLLLREEAMVKKNATLKTIQKTIDDFSHIEF 462

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +     +    L    GL + D T T      +   +LT                A    
Sbjct: 463 NPGSGPQKALLLHKVIGLPVLDKTPTGQP--ATGGDELTKLIRHP----------AGASF 510

Query: 292 NTLVEAMNSDGRLRGTLQ-FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
             L++AM    R++  L  F+ A + GR                 H   +   T      
Sbjct: 511 KGLLQAMIDLDRVQKILSAFIPAFKAGRLKADGM--------LYLHGSFNLGGTISGRLS 562

Query: 351 TSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           +SDP+   + S       ++S  +A++G     AD A +E R+ A +  +  K+K +  G
Sbjct: 563 SSDPNMQNLPSGSAYGKLIKSIFMAAKGYLFGGADFAALEDRINALLTRDPNKIKVYTDG 622

Query: 406 EDLYVT---------------TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            D +                 T +     +   +    R   K     L Y G    +  
Sbjct: 623 YDGHSMRTFAFWPEKCIGIVDTVSSIN--SIQHIYPGLRGEAKAPHFLLQYGGS---WMG 677

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           +    G   +    +       + +  + ++     +   +     L  G    
Sbjct: 678 LVKNVGFAEDEAKRIEDNYH--KLYSVSADWVATEIQKATKQGYVQLAFGLKLR 729


>gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
 gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
          Length = 568

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 90/359 (25%), Gaps = 67/359 (18%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
                L  EL  L      +    ++L   L    G+ +    +TT Q  L       P 
Sbjct: 216 ARLEALTTELRRLLNSPGLNPDSPQELMRALH-RNGIEV----KTTRQWELKE--SSHPA 268

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   +  A                   RL        A+    W             
Sbjct: 269 IEPLLAYKKLA-------------------RLH-------AANGWAWLDAWVN------N 296

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
            R   E            +     LQ I   +R  V A  G KL+VAD + +E RVL  +
Sbjct: 297 GRFQPEYVVGGVVSGRWASRGGGALQ-IPRQIRGAVHADPGHKLIVADASQLEPRVLVAL 355

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A +    +A    +DLY    A+ F           RA  KV  L   Y        ++ 
Sbjct: 356 AQDSKMAEAARD-KDLYAGIAAQGFGGD--------RAKAKVALLGAIYGATTGESGRLM 406

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                 +  A  F                 +G +       W Q
Sbjct: 407 ----------------PQLTRTYPRAVGFVEQAAREGEAGGTVTSRLGRSSPPPSDRWLQ 450

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                +    E  +A       G+       +     +       L   L + RS    
Sbjct: 451 SQKSTTA--EEQRRADAIARSRGRFTRNFVVQGSAADWAACWLAELRRRLRAMRSAGGP 507


>gi|311112135|ref|YP_003983357.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
 gi|310943629|gb|ADP39923.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
          Length = 650

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 92/291 (31%), Gaps = 48/291 (16%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV-------DVERTKLDQELESL 225
           +RL  L++ E     +   I   G   D A        +            KL +  E +
Sbjct: 231 ERLRLLAAAESAGSLVAAEIEYYGIPFDTAAHDAHLTEILGPRPPEGEHPAKLMELAEQI 290

Query: 226 TYGLV---SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
              L     +    ++L   L    G+++        +           +   +    +R
Sbjct: 291 RADLFAPHLNPDSPQELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWALIEPILR 349

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +                          G S    W           R  R    L+  
Sbjct: 350 YKKLYR------------------IFTANGWSWADSWV----------RNGRFRPHLEVG 381

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                    S    LQ+ ++ +RS ++A EG+  +V+D + IE R+LA ++ ++    A 
Sbjct: 382 GAATGRWGASGGGALQLPAE-IRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAG 440

Query: 403 ETGEDLYVTTY--ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
             G D+Y      AR   VA  +     RA  KV  LA+ Y G +     +
Sbjct: 441 R-GTDMYAGIAELARLEGVALTE-----RAQAKVGLLAIMYGGRSGEIGAL 485


>gi|320158402|ref|YP_004190780.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
 gi|319933714|gb|ADV88577.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
          Length = 687

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 95/501 (18%), Positives = 165/501 (32%), Gaps = 71/501 (14%)

Query: 46  DCVHDPV------MPQVLKEALENTDVTIVAHNS-YFERTVLKACFN-LDIPIHRWICTL 97
           D V   V          L + L   DV  VAHN   ++   LK  F   DI   + I TL
Sbjct: 51  DLVTGEVREYRPHEHHELLKDLYEADVL-VAHNGINYDVPALKKLFPFWDIQPTKVIDTL 109

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL-----------YDRN 146
           VL+R        + +    +   +  EEG E+       +                Y  +
Sbjct: 110 VLSRLLFADIKDRDMSGVRRWRLR--EEGHEVTGWVLPPKLLGSHSLKAWGYRLQEYKGD 167

Query: 147 KPNHREAWRLFGE----YCKGDVTVTREIFKRL-EPLSSK-------EQELWYLDQTIND 194
                +AW  F E    YC+ DVTVT ++ +RL +            E E+ +L      
Sbjct: 168 YGEQEDAWAEFSEDMLIYCRQDVTVTCKLIRRLMKEFPDASFKAMQLEHEIQWLMSQQER 227

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQEL------ESLTYGLVSSSRCLEKLKTWLFLETG 248
            G+  DVA A  L   +  +R  + Q+L         + G+ +  R + ++        G
Sbjct: 228 NGFKFDVAKAEQLYFKLLGDRETIRQKLVDKFGTWYASNGVTTPKRSMNRMGM--SYTAG 285

Query: 249 LHLEDLTETTCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
                L E T       +  K+  +A  +F      ++  + +   L      +  +   
Sbjct: 286 APYTKLKEVTFNPASRDHCAKVLQEAGVIFTEFTDGNKPKIDE-EVLSHIKLPEAEMLNE 344

Query: 308 LQFLGASRTGRWS-GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV-- 364
             F+   R G+ + G     + +      H  ++        ++ S P+  Q+ S     
Sbjct: 345 F-FMLNKRIGQIAEGNQAWLRLVTPEGFIHGSINPNGAVTGRALHSHPNIAQVPSGRAPY 403

Query: 365 ----RSCVIASEGKKLVVADLAGIEARVL-----AWMAGEQWKLKAFETGEDLYVTTYAR 415
               R C    +G  L+ +D +G+E R L      W   ++          D++      
Sbjct: 404 GQECRECFTVPDGWVLLGSDASGLELRCLGNRMFPW---DKGAYNKVILEGDIHWENAQA 460

Query: 416 S----FNVAPAQVTKDQ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    + V   +   D    R   K    A  Y GG    + +    G     +    + 
Sbjct: 461 AGFVDYGVIRDKHNPDHELRRGKAKTFIYAFLYGGGD---ELIGMQVGYTHEEYLAWKEA 517

Query: 469 -NSAPEEWEDAENFCRWMQEN 488
               P   +      RW +E 
Sbjct: 518 GAHIPIIKQLERRGERWTRER 538


>gi|300742225|ref|ZP_07072246.1| putative DNA polymerase I [Rothia dentocariosa M567]
 gi|300381410|gb|EFJ77972.1| putative DNA polymerase I [Rothia dentocariosa M567]
          Length = 579

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 93/291 (31%), Gaps = 48/291 (16%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV-------DVERTKLDQELESL 225
           +RL  L++ E     +   I   G   D A+       +            KL +  E +
Sbjct: 160 ERLRLLAAAESAGSLVAAEIEYYGIPFDTAVHDAHLTEILGPRPPEGEHPAKLMELAEQI 219

Query: 226 TYGLV---SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
              L     +    ++L   L    G+++        +           +   +    +R
Sbjct: 220 RADLFAPHLNPDSPQELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWVLIEPILR 278

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +                          G S    W           R  R    L+  
Sbjct: 279 YKKLYR------------------IFTANGWSWADSWV----------RNGRFRPHLEVG 310

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                    S    LQ+ ++ +RS ++A EG+  +V+D + IE R+LA ++ ++    A 
Sbjct: 311 GAATGRWGASGGGALQLPAE-IRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAG 369

Query: 403 ETGEDLYVTTY--ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
             G D+Y      AR   VA  +     RA  KV  LA+ Y G +     +
Sbjct: 370 R-GTDMYTGIAELARLEGVALTE-----RAQAKVGLLAIMYGGRSGEIGAL 414


>gi|66394986|ref|YP_240958.1| ORF037 [Staphylococcus phage G1]
 gi|62637008|gb|AAX92119.1| ORF037 [Staphylococcus phage G1]
 gi|182627951|gb|ACB89113.1| gp ORF120 [Staphylococcus phage A5W]
          Length = 286

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 10/151 (6%)

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++     +   L++F  GED++  T +  +N    +VTK++R   K +   L +    
Sbjct: 1   MRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESP 60

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            +F   A    + ++    + +     +     +     + E   ++   D   G     
Sbjct: 61  FSF---AGKNNMEVSEAEEIFE--KYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGH---- 111

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            ++  R   S   ++ NE  +    TI  G 
Sbjct: 112 -RRFIRSAQSTDKKIKNEGLRQSFNTIIQGS 141


>gi|313233190|emb|CBY24305.1| unnamed protein product [Oikopleura dioica]
          Length = 1902

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/402 (15%), Positives = 140/402 (34%), Gaps = 35/402 (8%)

Query: 197  YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
               D  L +     ++            + +   +S + ++ L T L     + ++    
Sbjct: 1498 ILEDRNLENKFIAEMEHAEIIFQMSENGMPFSESASEKTIKSLST-LMDRLAIKMKKHAP 1556

Query: 257  TTCQRVLSSNKKLTPQAIQVFNNR----MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
               +R   +   L  Q   V++      +    S  +    L      + R+R  ++F  
Sbjct: 1557 KGMKRDSLNFNHLLDQRKYVYDFLKCQPLEGKVSLSVSKEVLEVLEEKEPRIRNLIEFRR 1616

Query: 313  ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL--QIISDC------V 364
            A +       +   +N  R  R +     +I         +P     Q   +C      V
Sbjct: 1617 AQKA---FSDLLTYKNASRDDRIY-STPVLINRTGRISMDNPSLQMVQNEFECCGKIIKV 1672

Query: 365  RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
            R+C  A+  K  +  D   +E RVLA ++G++    +F   ED +V+   +   +   ++
Sbjct: 1673 RNCFRANPKKIFISVDYRQLELRVLALLSGDEGLQASFIDHEDPFVSIGRKW--LKRERI 1730

Query: 425  TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
            +  QR   K +   + Y  G K       T G+++    ++  ++     +   + F   
Sbjct: 1731 SVAQRTQVKGLVYGVIYGMGNKTLST---TLGVSIEEAKNI--SSEFMSSYPGMQKFLVD 1785

Query: 485  MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
            + ++   +   +  IG      ++++    SR + +      A    I+   A I +   
Sbjct: 1786 VDKSASSNLYTETLIGR-----RRSFDNYTSRAARV------AVNTKIQGSAADIVKIGT 1834

Query: 545  DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                  +K+   N  L+L     L++    + +  L    ++
Sbjct: 1835 VRAARKIKETGINAKLVLQIHDELLFEVEESQKGLLEDILKK 1876



 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 13/81 (16%)

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626
            +G  RS+ N T+R                +Q  + DI+  G + A +          +VL
Sbjct: 1800 IGRRRSFDNYTSRAARV-------AVNTKIQGSAADIVKIGTVRAARKIKETGINAKLVL 1852

Query: 627  TVHDEIVCETPDTDEFNASML 647
             +HDE++ E  ++ +     +
Sbjct: 1853 QIHDELLFEVEESQKGLLEDI 1873


>gi|258655373|ref|YP_003204529.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
 gi|258558598|gb|ACV81540.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
          Length = 550

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 99/325 (30%), Gaps = 90/325 (27%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R +R H E            T     LQ I   +R  V+A  G +L+VAD A +E RVLA
Sbjct: 278 RGNRFHAEYLSGAVVSGRWATRGGGALQ-IPRVLRQAVVADPGYRLIVADAAQLEPRVLA 336

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ +   L+A    +DLY    A  F           RA  KV  L   Y        +
Sbjct: 337 AISAD-LVLQAISAEDDLYAGLAADGFG--------GNRAAAKVAMLGAMYGQTTGEGGR 387

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           + ST                    +  A  +            +    +G AC     +W
Sbjct: 388 LVSTL----------------RARYPQAMGYVDGAARAGERGEVVHSVLGRACPPPGTSW 431

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                              + +  G+   A                      P+ R+L  
Sbjct: 432 -------------------EAVRIGRQQDAT---------------------PAERTLAD 451

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEGMMNA-----TKAGYDI 624
           R  G+                   G+ T N +VQA + D  A  +          AG ++
Sbjct: 452 RLAGD------------------RGRFTRNFVVQASAADWAAVWLAGLRTSLTEVAGAEL 493

Query: 625 VLTVHDEIVCETPDTDEFNASMLYH 649
           V   HDE++   P+      + L  
Sbjct: 494 VFFQHDELIVHAPEPVAEPVAGLIE 518


>gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
 gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
          Length = 1712

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 83/299 (27%), Gaps = 99/299 (33%)

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----------GEDLYVT 411
             +R   +A +G+ L+  D   +EAR+LA   G+Q  +  F               D++V 
Sbjct: 1451 ALRDAFVAPKGRLLLSVDYCQLEARLLAHFCGDQRLITLFNQPDGDYNSTGSPTYDIFVH 1510

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   + A  +V+  +R   K +   + Y  G                           
Sbjct: 1511 IASTWLSKALNEVSDMERNGIKQLVYGVIYGMG--------------------------- 1543

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                  A +  R M     E            E +   +  +  RV E    +     + 
Sbjct: 1544 ------ARSLSREMGVTLAEG-----------EALMSKFDNEFPRVREWTRSVIHGATRE 1586

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              +  +I+ R R    L                                     +  R+ 
Sbjct: 1587 GASVPSILGRPRHLAGLGGGGTA---------------------------QERARAQRQ- 1618

Query: 592  TYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DIVLTVHDEIVCETPDT 639
                       QA + DI+    +   +              +I+L +HDE++ E  + 
Sbjct: 1619 -----AVNTACQASAADIMKAATLEVARRLAAMRDENGRPPAEILLQIHDELLLEVDED 1672


>gi|271967935|ref|YP_003342131.1| DNA polymerase I - 3'-5' exonuclease-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511110|gb|ACZ89388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains-like
           protein [Streptosporangium roseum DSM 43021]
          Length = 531

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 91/299 (30%), Gaps = 66/299 (22%)

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
            R +   +  +  +G   +    +++    F   G+ +        ++V        P  
Sbjct: 194 ARLQALADQVAEAFGTPFNPDSPQQI-VKAFKSAGVPVASTRAHEIKKV------DHPGV 246

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   +  A                          F G     +W           R  
Sbjct: 247 APLLAYKEMAR----------------------IYSFHGWVWADQWV----------RDH 274

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           R   E            TS    LQ I   +R  V+A EG  LVVAD A +E RVLA MA
Sbjct: 275 RFRPEYVVGGVVSGRWATSGGGALQ-IPKVMRQVVVADEGWTLVVADAAQLEPRVLAAMA 333

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+    +A     DLY     ++F          +R   K+  L+  Y G +    K+ +
Sbjct: 334 GDGGLARA-AGQIDLYQALA-QAFG--------GERDSAKIAMLSAMYGGTSGDAPKLLA 383

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                              + +  A  F      +  E  +   ++G  C +    WR+
Sbjct: 384 VM----------------RQRFPRAYQFVEDAARSGEEGKLVRSWLGRTCPQPSAGWRE 426


>gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 558

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 67/202 (33%), Gaps = 26/202 (12%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +R  L++    R    +      QN  R  R   E     T     +T+    LQ I   
Sbjct: 258 VRPLLEYKRLYRIW-VAHGWSWLQNWVRDGRFRPEFHAHGTVTGRWVTNGGGALQ-IPKV 315

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G  LVVAD A +E RVLA ++ +   ++     +DLY +   R+F      
Sbjct: 316 IRRAVVADPGHCLVVADAAQLEPRVLAAISRDPGLMEVAARADDLYQSVSERAF------ 369

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                RA  K+  L   Y        K  +                     +  A  +  
Sbjct: 370 --SGDRAQAKLAVLGAIYGQTKGDGLKNLAAL----------------RRRFPRAVAYVD 411

Query: 484 WMQENHPEHAIEDLFIGTACER 505
                  E  +   ++G  C  
Sbjct: 412 EAARAGEEGRLVRTWLGRTCPP 433


>gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 563

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 83/288 (28%), Gaps = 44/288 (15%)

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
           L+   L   + Q ++   + L    I+V + R    + +       + A     RL    
Sbjct: 224 LNSPSLNPDSPQDLM---RALHRNGIEVKSTRQWELQESKHPAIQPLLAYKKLSRLHTA- 279

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
              G S    W           R  R H E            +     LQ I   +R+ V
Sbjct: 280 --NGWSWLDAWV----------RDGRFHPEYVVGGVVSGRWASRGGGALQ-IPRNIRAAV 326

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
            A  G KL+VAD + +E RVL  +A +    +A    +DLY    A+ F           
Sbjct: 327 HADPGHKLIVADASQLEPRVLVALAQDTKMAEAARD-KDLYAGIAAQGFGGD-------- 377

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           RA  K+  L   Y        ++                       +  A  F       
Sbjct: 378 RAKAKIALLGAVYGATTGESGRLM----------------PQLTRTYPRAVGFVEQAARE 421

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                     +G +       W +     +    E  +A       G+
Sbjct: 422 GEAGRTVTTRLGRSSPPPSAGWLRSQQSTTA--EEQRRADNLARSRGR 467


>gi|32442283|gb|AAP82212.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 121/417 (29%), Gaps = 84/417 (20%)

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGE----YCKGDVTVTREIFKRL----EPLSSK 181
           + +         +           W  + E    YCK DV VT  +++ L       S  
Sbjct: 12  MRKGGHSLKSWGIRLDEYKGEFNDWSQYSEEMKQYCKQDVKVTELVYQELLKEGSKFSQA 71

Query: 182 EQELWYLDQTI----NDRGYCVDVALAHTLNQIVDVERTKLDQELES------------- 224
             +L +    I       G+ +D  LA  +      E T+++++++              
Sbjct: 72  SIDLEHQVHAIMCEQEANGFLLDTNLAQEIYTTCLAETTRIERDIKEFMVPIAVPVKEVN 131

Query: 225 -------------------------LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT- 258
                                           +     ++   L    G      T+   
Sbjct: 132 LKYKKDGSIFANQLLEGCNVQGDYTKIMWEEFNLASQPQINKRLN-RLGWKPTVKTKGGD 190

Query: 259 ----CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
               C   L++     PQA++             L  +  ++    DGR+ G +   GA 
Sbjct: 191 SYKICPENLATIPDTAPQAVKGLKKWKVLETRWKLA-SEWLQGSQVDGRVHGQVITPGAV 249

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            T R +       N+P      + +   +  +  +               R      EGK
Sbjct: 250 -THRAAHRGPNMANIPSVPHGKDGILWKMDGMYAAEC-------------RQAFTVPEGK 295

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGK 433
            LV  D AGI+ RVLA    +    +    G D++       FN+ A  +  KD R   K
Sbjct: 296 LLVGTDAAGIQLRVLAHYMNDPVYTEQVIDG-DIHT------FNMNALGKFCKD-RPTAK 347

Query: 434 VMELALGYQGGAKAFQK----MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
               A     G     +     A+    ++  F   + T    +          WM+
Sbjct: 348 TFIYAFLLGAGVGKIAEILGCNAAQANKSMQNFYEALPTLKRLKSEAARAASMGWMK 404


>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
 gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
          Length = 736

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 101/332 (30%), Gaps = 42/332 (12%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64
           D     +        ++  +F  +          H  P MP+ L         K  LE+ 
Sbjct: 348 DTETTALDPMV--ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLARLKPWLESA 405

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           D   V  +  ++  VL         I     TL+ +              AL+    K  
Sbjct: 406 DRRKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMDSLALRHLGIKTI 463

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + +++  +  K    + +       +                +T ++ + L P  ++E  
Sbjct: 464 KYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHRALYPQIAREPG 513

Query: 185 LW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           L            ++ + +   G  +D AL H  +  +     +L+ +   L  G   + 
Sbjct: 514 LERVYREIEMPVSHVLRKMERTGVLIDDALLHAQSTEIATRLIELEAQAYELAGG-EFNL 572

Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++    F +  L +         +T + VL    +  P    +  +R  +   +  
Sbjct: 573 GSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSKLKSTY 632

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
                   + + GR+     +  A R  R + 
Sbjct: 633 TDKMPRMVIPATGRVHT--NYAQAVRRSRAAS 662


>gi|325964629|ref|YP_004242535.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470716|gb|ADX74401.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 572

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 93/357 (26%), Gaps = 83/357 (23%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER--------------TK 217
             RL+ L + E     +   +   G          L++ +  E                 
Sbjct: 169 RSRLQLLLAAESAGAMIAAEMQHAGV----PWREDLHEQILAEHLGPRPPAGHRPAKLEV 224

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           L+QEL  L      +    + L   L    G+ ++   +   +          P    + 
Sbjct: 225 LNQELRRLLNSPTLNPDSPQDLMRALH-RNGIEVKTTRKWELRE------SSHPAIAPLL 277

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             +  +                   RL       G S    W              R   
Sbjct: 278 AYKQLS-------------------RLHTA---NGWSWLDAWVA----------GGRFRP 305

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           E            +     LQ I   +R  V A  G KL+VAD + +E RVL  +A +  
Sbjct: 306 EYVVGGVVSGRWASRGGGALQ-IPRNIRGAVHADPGHKLIVADASQLEPRVLVALAQDSS 364

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +A    +DLY    A+ F           RA  KV  L   Y   +    ++      
Sbjct: 365 MAEAARD-QDLYAGIAAKGFGGD--------RAKAKVALLGAMYGATSGEAGRLM----- 410

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                            +  A ++                 +G +     + W Q  
Sbjct: 411 -----------PQLARTYPRAVDYVEQAARAGESGGTVTTRLGRSSPPPSERWFQSQ 456


>gi|70949566|ref|XP_744181.1| DNA polymerase 1 [Plasmodium chabaudi chabaudi]
 gi|56524028|emb|CAH74320.1| DNA polymerase 1, putative [Plasmodium chabaudi chabaudi]
          Length = 1069

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/458 (12%), Positives = 136/458 (29%), Gaps = 83/458 (18%)

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TP 271
           E   L       + G  S++     +   +  E    ++    +     +  NK L    
Sbjct: 600 ELNSLASLDIQESNGFTSNNHD---ISEKINNEMNSKIKIRQYSNTINEMKRNKSLQTNN 656

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
           + +++  + +  +     K    ++ + S+ +L     +  + +  +      P      
Sbjct: 657 KMLKIIIDELEKNNYVGEKEKENIKQIISNIKL-----YRESKKLFQNYIENLPKHIQKN 711

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISD---------------CVRSCVIASE--GK 374
            ++ H   +Q+           P+   I S                 V++  + ++   +
Sbjct: 712 TNKIHCNFNQLGASTGRLSCDQPNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSVNQ 771

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+  D   +E  V+A+++ +   LK      D++V T    FN     VTK+ R + K 
Sbjct: 772 NLLTFDYKQMELFVMAYLSFDSQLLK-MLNNSDVFVETAKVLFNT--NDVTKELRRMTKT 828

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y         +A    ++ N    L+        + +   F +  +        
Sbjct: 829 VIYGILYGQSEN---GLAKNLLVSENFAKSLIDNFFNF--YPNVFKFMQKQKILVKNINS 883

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
               IG                         +  + TI+N   I          +     
Sbjct: 884 VYTLIGR-----------------------KRLVDPTIKNKYRISMNTP-----IQGCAA 915

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 +L   + L Y D  N    ++T  +      +   K    I             
Sbjct: 916 DIMKFALLSCHKILSYFD--NPNQDIDTFLKMNNINISLLKKYKNYI------------- 960

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMT 652
                    ++L +HDE++ +  +       +L  ++ 
Sbjct: 961 -----KSTKLILQIHDELLFQCDENGTKIIQLLNPVLE 993


>gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
 gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
          Length = 626

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 80/570 (14%), Positives = 157/570 (27%), Gaps = 120/570 (21%)

Query: 46  DCVHDPVM---PQVLKEAL--ENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVL 99
           D +        P  +++ L        +VAHN   F+   ++   +  + + R   TL  
Sbjct: 49  DFLTGESFSFGPGEIEDGLGLLCQSRLLVAHNGLCFDIPAIQK-LHPSLLLPRLFDTLTA 107

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH-----------------ECL 142
           +R              L  ++ K  +  +L  + C+                     +  
Sbjct: 108 SR--------------LIWTNLKDLDFTQLRKKSCRFPPKLAGSHSLDAWGQRLGVMKGD 153

Query: 143 YDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL------EPLSSKEQELWYLDQTINDR 195
           Y +   N    W      YC+ DV V   +++ +          + E E   +       
Sbjct: 154 YGKTTENAWSRWSEDMQRYCEQDVEVLEALYRHILDQRYSPEALALEHEFQAVIFHQERT 213

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESL-----------------TYGLV-------- 230
           G   D   A +L   +  +R      L+ +                 T G V        
Sbjct: 214 GVWFDERAAQSLYAELAAKRNDAVTALQEVFPQKRIEEIFIPKANNRTRGYVKGVPFTKV 273

Query: 231 ----SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP----QAIQVFNNRMR 282
                +    +++   L  + G    + T+T   +V        P    + +  +   ++
Sbjct: 274 RYETFNPASRQQIADRLMEKHGWKPSEFTDTGQPKVDEDVLASLPFPECKPLVDYLELLK 333

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                    N  ++ +  DGR+ G +   GA  TGR +        +P   +  ++    
Sbjct: 334 IIGMLAEGKNGWLKLVGPDGRIHGRVITNGAV-TGRCTHNSPNLAQIPARGQYGKQC--- 389

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM--AGEQWKLK 400
                                 R+   A      V AD +G+E R+LA    A +     
Sbjct: 390 ----------------------RALFAAPPPLVQVGADASGLELRMLAHYLAAYDGGAYA 427

Query: 401 AFETGEDLYVT--TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
                 D++      A            + R   K    A  Y  G +    + +    +
Sbjct: 428 KVLLEGDIHTANQHAAGL----------ETRDNAKTFIYAFLYGAGDEKLGSIVAPLASS 477

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                              A        +       +  ++     R     R  HS ++
Sbjct: 478 AVQTKRGRALKDRFFRSLPAIKRLIDDVQGVLTGPGKRPYLIGIDGRHLH-IRSSHSALN 536

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPL 548
            L      A    +      +  +RR + L
Sbjct: 537 TLLQSA-GAVLMKLATVIFHMEAQRRGLRL 565


>gi|282857717|ref|ZP_06266926.1| DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282584387|gb|EFB89746.1| DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 656

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 77/554 (13%), Positives = 157/554 (28%), Gaps = 131/554 (23%)

Query: 152 EAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQ--ELWYLDQTI----NDRGYCVDVALA 204
           + W      Y + DV VTR +++R++     +   +L +  Q I       G+  +   A
Sbjct: 148 QEWSEEMCAYNRQDVVVTRALWERIQEQDYSQTAIDLEHQFQKIILQQEQNGFPFNQEKA 207

Query: 205 HTLNQIVDVERTKLDQELESL-----------------------------TYGLVSSSRC 235
                 +   R +L QEL+ +                                   +   
Sbjct: 208 VLYYSQLAKRREELTQELQRIFPPEDKGDWFVPKVNNAKRGYVKGERVWRARITAFNPGS 267

Query: 236 LEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
            + +   L    G       E  T    + VLS+      +A+  +    +         
Sbjct: 268 RKDIAERLRETRGWEPQEYTERGTPKVDEEVLSALDWPEAKALSEYFLVQKRIGQLAEGN 327

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           N  ++ +  DGR+ G +   GA                                      
Sbjct: 328 NAWLKLVGRDGRIHGHVITNGA-------------------------------VTGRCTH 356

Query: 352 SDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFE- 403
             P+  Q+           RS   A  G  ++ AD +G+E R LA  MA       A + 
Sbjct: 357 VSPNMAQVPAVGVPWGAEFRSLFYAPPGWSVLGADASGLELRCLAHFMARYDGGAYARKI 416

Query: 404 TGEDLYVTTY-ARSFNVAPAQVTKDQ------RAI-GKVMELALGYQGGAKAFQKMASTT 455
              D++     A        +   +       R    K    AL Y  G     ++    
Sbjct: 417 LEGDIHWANAQALGLVAEGEKKDPENPYHMWARNKVAKRFIYALNYGAGDHKLGELVE-- 474

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L  +    L+      +  + +    +  Q  +     +D+        ++  + +   
Sbjct: 475 -LTDDQAKALLAAAPKSKIDQTSARLAKQFQ--YKTITFKDIAQSLKGAELRATFMKNLP 531

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++ L  ++ +  ++        + ++R +V  ++   +      +L S  ++  +    
Sbjct: 532 ALASLIEDVKRVAKK--RGYLIGLDKRRLNVRSIHSAFNT-----LLQSAGAIAVKKA-- 582

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                  T        T G  L + + Q                     V  VHDE    
Sbjct: 583 -------TCVLWDDLTTAG--LADKVQQ---------------------VAHVHDEYQLL 612

Query: 636 TPDTDEFNASMLYH 649
             + +E +   +  
Sbjct: 613 VKEGEEEHVGQIAT 626


>gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 635

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 74/228 (32%), Gaps = 24/228 (10%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN ++  +  N  F+ ++          +     T++L+ +            A 
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172
           +    +    + L  +     T   +                EY   D  VT      ++
Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516

Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +L+   +        E  L ++   +   G  +D       +  +    T L+++  +L
Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAYAL 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
             G   +    ++L+  LF + GL +    +    + +    K  P A
Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKRQKVRHQQMKKYWKNYPIA 623


>gi|32442281|gb|AAP82211.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 110/357 (30%), Gaps = 76/357 (21%)

Query: 158 GEYCKGDVTVTREIFKRL----EPLSSKEQELWYLDQTI----NDRGYCVDVALAHTLNQ 209
             YCK DV VT  ++  L    E  S     L ++   I       G+ +D  LA  +  
Sbjct: 45  KAYCKQDVKVTELLYNTLLKEGEAFSQASINLEHMVHAIMCEQQANGFELDTDLAQEIYT 104

Query: 210 IVDVERTKLDQELES--------------------------------------LTYGLVS 231
           +   E  +++ E++                                              
Sbjct: 105 VCLKETLRIETEIKEFMVPIAVPVKEVTIKRKKDGAIFANQLLEGCNVQGDYTKIMWEEF 164

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETT-----CQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +     ++   L  + G +    T++      C   L++     PQA++           
Sbjct: 165 NLGSPTQINKRL-DKLGWNPTVKTKSGESYKICPENLATIPDDAPQAVKGLKAWKVLETR 223

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
             L     +E    DGR+ GT+   GA  T R +       N+P    + + +   +  +
Sbjct: 224 WKLA-QEWLEKSQGDGRVHGTVITTGAV-THRAAHRGPNMANIPSVPHNKDGIFWKMDGM 281

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
             +               R      EG+ LV  D AGI+ RVLA    +    +    G 
Sbjct: 282 YAAEC-------------RQVFKVPEGRLLVGTDAAGIQLRVLAHYMNDPVYTEQVIDG- 327

Query: 407 DLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           D++       FN+ A  +  KD R   K    A     G     ++    G   N  
Sbjct: 328 DIHT------FNMNALGRHCKD-RPTAKTFIYAFLLGAGVGKIAEILGCNGGQANVA 377


>gi|221066661|ref|ZP_03542766.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
 gi|220711684|gb|EED67052.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
          Length = 766

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 95/343 (27%), Gaps = 69/343 (20%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
             R H       T         P  +  +   +RS V A EG  ++ AD + IE R+ A 
Sbjct: 454 NGRLHPLFG-YDTVTGRLTAKRPASMA-MDQRLRSAVTAPEGSVIISADYSQIELRIAAC 511

Query: 392 MA-------GEQWKL-KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            A       G    L  AF TG D ++TT                        L    Q 
Sbjct: 512 FAEKMRAGTGLPGMLATAFRTGVDPHLTTA-----------------------LQSVRQR 548

Query: 444 GAKAFQKMASTT--GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH------AIE 495
           G   F   A+    GL       L        +   A+NF                 A  
Sbjct: 549 GDIDFTGNAAAYIAGLCDEERCELKSRLFVERDTAKAQNFGLLYGMKDSSFWEYGRLAYG 608

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
             +     +  + AW + +  ++ L +     F    +    + A               
Sbjct: 609 LTWTFEEAQAARDAWFKMYPEIALLHDSYQSTFSAAAKETLFLKAHDGVFQTTTSRVVSG 668

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
             L     SGR +         SY                       Q    DI+   + 
Sbjct: 669 ATL-----SGRKVTATSPFLLLSYA---------------------CQGTGADIIISAIA 702

Query: 616 NATKAGYD-IVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPS 656
           +        +V  VHDE+V   P++  +  A+ +   M S   
Sbjct: 703 SMDHGTRRHLVNVVHDELVLCVPESCSQREAAEVRRAMLSAED 745


>gi|255326718|ref|ZP_05367794.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
 gi|255295935|gb|EET75276.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
          Length = 668

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 129/438 (29%), Gaps = 66/438 (15%)

Query: 147 KPNHREAWRLFGEYCKGD-VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA-LA 204
            P H     L  E+             +RL  L++ E     +   I   G   +V    
Sbjct: 222 LPEHPVVRVLMREWLAQARAISESRHPERLRLLAAAESAGALVAAEIGYYGIPFNVQAHH 281

Query: 205 HTLNQIVD---------VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
             L +++           +  +L ++++ + +    +    + L   L    G+ +    
Sbjct: 282 EHLCELLGPRPVPGERPQKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSV---- 336

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           ++T    L S     P   Q              K   +++ +    +L       G + 
Sbjct: 337 KSTRSWELKSWADAIPAQRQ--------------KRWAMIDPILRYKKLYRIWTANGWTW 382

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
              W                   L+           S    LQ+ ++ +R  V A EG+ 
Sbjct: 383 ADTWVSE----------GAFRPHLEVGGAATGRWGASGGGALQLPAE-IRQAVQAPEGQV 431

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY--ARSFNVAPAQVTKDQRAIGK 433
           L V D + IE R+LA ++ ++    A   G DLY      AR   V   +     R+  K
Sbjct: 432 LTVTDGSQIEPRILAALSRDEALASAGR-GADLYAGIAELARMKGVGLTE-----RSHAK 485

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           V  LA+ Y G +     +                       +  A +F            
Sbjct: 486 VGMLAIMYGGRSGEIGAL----------------LPHVAALFPQAMDFTERAARIGEAGG 529

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
               F+G     V + +R+  +  S    E  +A      +G+       +     +   
Sbjct: 530 QVTTFLGRTSPPVDERFREIVADRSSPAAE-SRAVSSARAHGRMTRNFIVQGTAAEWALC 588

Query: 554 DKNNLILMLPSGRSLVYR 571
               +   L S R     
Sbjct: 589 WMGAVRSRLLSERIFGMP 606


>gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii]
 gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 259

 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 74/252 (29%), Gaps = 47/252 (18%)

Query: 340 DQIITHLPTSITSDPDPLQIISDC----VRSCVIAS--EGKKLVVADLAGIEARVLAWMA 393
            + +  +   +++   PLQ   +     VR    A    G  LVVAD   +E R+LA M 
Sbjct: 4   ARQVNAIDKLLSAFIIPLQPALEKDRYKVRQAFTADVAAGHTLVVADYGQLELRLLAHMT 63

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD-----------------------QRA 430
             +  L+AF  G D +  T    ++     +  +                       +R 
Sbjct: 64  DCKSMLEAFVLGGDFHSRTAVGMYDHIKDAIRDNKVLLEWDGEGESPLPLVKDLYASERR 123

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             KV+  ++ Y   A     +A+    +       V    A           R  QE   
Sbjct: 124 KAKVLNFSIAYGKTA---HGLAADFKTSKEEAQATVDKWYADRFE------VRQWQEKTK 174

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           E A ++  + T   R +      ++   +      +A   T               P + 
Sbjct: 175 EGARQEGKVRTLLGRTRP-LPGINAPDFKSKGHSERAAINTPIQP--------LFKPSIT 225

Query: 551 MKKDKNNLILML 562
                      L
Sbjct: 226 RSYRTGWCWSKL 237


>gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054]
          Length = 562

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 56/180 (31%), Gaps = 26/180 (14%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R   E            +     LQ I   +R  V+A  G  LVVAD A +E RVLA
Sbjct: 292 RGGRFRPEYVVGGVVTGRWASRGGGALQ-IPRTLRRAVVADPGWLLVVADAAQLEPRVLA 350

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G+    +    G DLY    A +F+          R   K+  L   Y         
Sbjct: 351 ALSGDAGLART-AAGGDLYAALAASAFHGD--------REQAKLGLLGAMYGQTGGGIGP 401

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           + +T                    + DA  +         +  +    +G  C      W
Sbjct: 402 LLNTL----------------RRRYPDAMGYVEAAARTGEDGGVVASRLGRVCPPPSADW 445


>gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 516

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 110/378 (29%), Gaps = 81/378 (21%)

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI- 210
           +   +  E+   D   T     RL+ L + E         +   G          L +  
Sbjct: 115 DPLAVATEFA--DQRATIGTDARLDLLIAAESAGALSAAEMTHTGLPFSTQKHRELLEER 172

Query: 211 ---------VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                    +     +L  ++  +    V+ S  +E  +   F   G+ L    +   Q 
Sbjct: 173 LGPRPTGYDLPARMQELAAQISEVFGRTVNPSSSVEITEA--FGRQGIELPSTRKWFLQE 230

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           +        P    +  +R  A   +      +   +  D R R      G   +GRW+ 
Sbjct: 231 I------DHPAVPLLLRHRELAKLYSTNGWQWMDSWVRGD-RFRPIYVPGGVV-SGRWAS 282

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                  +P+                                +RS V+A  G   VVAD 
Sbjct: 283 RGGGALQIPKT-------------------------------MRSSVVADPGHVFVVADA 311

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             +E R+LA M+G++  + A    +DLY    A +F           RA  KV  L + Y
Sbjct: 312 GQLEPRILAAMSGDRRMMAA-AGDDDLYALVGAEAFGGD--------RAKAKVAILGVLY 362

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              A   + +                     + +  A  +     +      +    +G 
Sbjct: 363 GATAGEAKAL----------------LILLRKRFPVAVEYVEQAAKAGERGEVVKSLLGR 406

Query: 502 ACERVKKAWR---QKHSR 516
           AC      +      H+R
Sbjct: 407 ACPPPSPDFYSHGDAHAR 424


>gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
 gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
          Length = 520

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 93/307 (30%), Gaps = 69/307 (22%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L  ++  +    V+ S  +E  +   F   G+ L    +   Q +        P 
Sbjct: 184 ARMQELAAQISEVFGRTVNPSSSVEITEA--FGRQGIELPSTRKWFLQEI------DHPA 235

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +  +R  A   +      +   +  D R R      G   +GRW+        +P+ 
Sbjct: 236 VPLLLRHRELAKLYSTNGWQWMDSWVRGD-RFRPIYVPGGVV-SGRWASRGGGALQIPKT 293

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +RS V+A  G   VVAD   +E R+LA M
Sbjct: 294 -------------------------------MRSSVVADPGHVFVVADAGQLEPRILAAM 322

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  + A    +DLY    A +F           RA  KV  L + Y   A   + + 
Sbjct: 323 SGDRRMMAA-AGDDDLYALVGAEAFGGD--------RAKAKVAILGVLYGATAGEAKAL- 372

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR- 511
                               + +  A  +     +      +    +G AC      +  
Sbjct: 373 ---------------LVLLRKRFPVAVEYVEQAAKAGERGEVVKSLLGRACPPPSPDFYS 417

Query: 512 --QKHSR 516
               H+R
Sbjct: 418 HGDAHAR 424


>gi|163841491|ref|YP_001625896.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954967|gb|ABY24482.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 411

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 91/290 (31%), Gaps = 59/290 (20%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGY--CVDV--ALAHTLNQ-----IVDVER-TKLDQEL 222
           KRL+ L + E     +   +   G    VD+   L           +   E+  +L  EL
Sbjct: 170 KRLQLLLAAESAASLVAAEMQHAGVPWRVDIHEQLLEDALGPRPTGMQRPEKMDRLLAEL 229

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
            +    +  +    + L   L    G+     T++     L + K     AI+      +
Sbjct: 230 RAKLGAIGLNPDSPQDLMRALH-RAGIE----TKSARTWELQNIKHP---AIEPLLAYKK 281

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            SR         ++    DGR R                                E    
Sbjct: 282 LSRLFSANGWAWLDQWVHDGRFR-------------------------------PEYVVG 310

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                   +     LQ I   VR  V A+ G KL+VAD A +E RVLA +A +    +A 
Sbjct: 311 GVASGRWASRGGGALQ-IPKQVRGAVHANHGYKLIVADAAQLEPRVLAALAQDAKMAEAA 369

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +   DLY    A+ F           RA  KV  L   Y        ++ 
Sbjct: 370 QDH-DLYAGIAAQGFGGD--------RAKAKVALLGAIYGATTGESGRLM 410


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
            Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
            strain Friedlin]
          Length = 1429

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 19/200 (9%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIE 385
            R  R H+ +D   T    ++++ P    I  D    VR   ++  G K   V  D + +E
Sbjct: 1066 RDGRVHQHIDMTATTTSRTVSAYPSCQNIPKDDKSSVRRLFVSRFGSKGRCVEVDYSQLE 1125

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----------QRAIGKVM 435
              VLA +  +        +G D +V   A    +   ++ +            R   K  
Sbjct: 1126 IVVLAILCNDANLTNDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRRTAKQF 1185

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G         TTG+ +      ++  N             R +        +
Sbjct: 1186 SFQRLYGAGVPLLH---KTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGL 1242

Query: 495  EDLFIGTACERVKKAWRQKH 514
               FI      ++ + R + 
Sbjct: 1243 PTSFIAEMPTGLRMSLRTRD 1262


>gi|84495963|ref|ZP_00994817.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84382731|gb|EAP98612.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 565

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/396 (15%), Positives = 116/396 (29%), Gaps = 75/396 (18%)

Query: 188 LDQTINDRGYCVDVALAHTLNQIVD------------VERTKLDQELESLTYGLVSSSRC 235
           +   + + G  VD A+   L                   R +  + L  +     +  R 
Sbjct: 188 MCLELEEGGLPVDRAVMERLIGEFAGPRAASEEAAAVARRERDAEVLRHVPGRESTDLRN 247

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
             +++  L    G+ + +  +     VL + + + P    +   R     +       L 
Sbjct: 248 PLQVRDML-AGVGVDVPNTRK----WVLDAYRHVHPVVDALLAWRKAERIATTYGYRWLD 302

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + +  D RLRG     G +     +G +                            +  +
Sbjct: 303 QCVGPDDRLRG-----GWTACDGAAGRM----------------------------TAEN 329

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
            L  +   +RS V A  G   V ADL  IE RVLA ++G+    +A     DLY    +R
Sbjct: 330 GLHNLPAALRSGVAAHPGHVFVRADLGQIEPRVLAVVSGDPAFAEATRAD-DLYAPVASR 388

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAK----AFQKMASTTGLNLNTFAHLVKTNSA 471
                        R + K+  LA  Y   +     A + +     + +        T   
Sbjct: 389 L---------GVDRPVAKIAVLAAMYGQRSGAAGEALKGLERAYPVAMGLLDRAYDTGVR 439

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E                 +  +              A R + +R +     +  A  + 
Sbjct: 440 GEPLRTFGGRLIPTGRFLAQSPV-------GTNPALDAARGRFARNA----IIQGAAAEL 488

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            +   A +      +    +    + L++  P  R+
Sbjct: 489 FKAWAATVRALGTPMGAQIVLCLHDELLVHAPESRA 524



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEGMMNAT 618
            ++P+GR L    VG N                  G+   N I+Q  + ++         
Sbjct: 449 RLIPTGRFLAQSPVGTN-----------PALDAARGRFARNAIIQGAAAELFKAWAATVR 497

Query: 619 KAG----YDIVLTVHDEIVCETPDTDEFNASMLY--HLMTSNPSWAKGLPLK 664
             G      IVL +HDE++   P++     + L    L  ++  WA G P++
Sbjct: 498 ALGTPMGAQIVLCLHDELLVHAPESRAAEVAALVDQSLADASRRWAAGAPVR 549


>gi|312141752|ref|YP_004009088.1| DNA polymerase i pola2 [Rhodococcus equi 103S]
 gi|311891091|emb|CBH50410.1| putative DNA polymerase I PolA2 [Rhodococcus equi 103S]
          Length = 521

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 105/364 (28%), Gaps = 74/364 (20%)

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
           + ++ V   ++  E+ +     V+ +   E +    F   G+ L    +   + +     
Sbjct: 183 DDMLPVRLHQVTDEVSAAFGRQVNPASQPEVVAA--FAREGIELASTRKYLLREI----- 235

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    +   R  A   A                        G +    W        
Sbjct: 236 -DHPAVEPLLRYRDLAKLHAAN----------------------GWTWLDAWV------- 265

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
              R +R                +     LQ I   +R+ VIA  G   V+AD   +E R
Sbjct: 266 ---RGNRFRPVYVPGGVVSGRWASRGGGALQ-IPKALRTSVIADPGHTFVIADAGQLEPR 321

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA M+G+     A    +DLY    A  F           RA  K+  L + Y   A  
Sbjct: 322 ILAAMSGDPRM-TAAAGTDDLYALVAAEVFGGD--------RAKAKIAILGVLYGATAGE 372

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + +                     + +  A               +   ++G AC    
Sbjct: 373 ARAL----------------LTLLRKRFPVAVQLVEDAARAGERGEVVHSWLGRACPPPS 416

Query: 508 KAW--------RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            +W        R + +R   +     +     + + +  ++    D  LV+ + D+  + 
Sbjct: 417 DSWWSNGDTHARGRFTRNFVVQATAAEWALCLLADLRRRLSAAPGDGELVFFQHDEVMVH 476

Query: 560 LMLP 563
              P
Sbjct: 477 TRRP 480


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 19/200 (9%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGK--KLVVADLAGIE 385
            R  R H+ +D   T    ++++ P    I  D    VR   ++  G   + V  D + +E
Sbjct: 1067 RDGRVHQHIDMTATTTSRTVSAYPSCQNIPKDDKSSVRRLFVSRFGSQGRCVEVDYSQLE 1126

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----------QRAIGKVM 435
              VLA +  +         G D +V   A    +   ++ +            R   K  
Sbjct: 1127 IVVLAILCNDANLTHDLNHGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRRTAKQF 1186

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G         TTG+ +      ++  N A           R +        +
Sbjct: 1187 SFQRLYGAGVPLLH---KTTGIPVKDLEASIQRENEAYPGIAQFHRTIRSVALRPNNPGL 1243

Query: 495  EDLFIGTACERVKKAWRQKH 514
               FI      ++ + R + 
Sbjct: 1244 PTSFIAEMPTGLRMSLRTRD 1263


>gi|291438121|ref|ZP_06577511.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291341016|gb|EFE67972.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 563

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 96/341 (28%), Gaps = 56/341 (16%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           ++  L++    R    +      Q+  R  R   E     T     ++     LQ I   
Sbjct: 242 VKPLLEYKKLYRIW-VAHGWSWLQDWVRDGRFRPEFHAGGTVSGRWVSHGGGALQ-IPKV 299

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R F      
Sbjct: 300 IRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRVF------ 353

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   K+  L   Y   +    K  +                     +  A  +  
Sbjct: 354 --SGDRDRAKLAVLGAVYGQTSGDGLKNLAAL----------------RRRFPRAVAYVD 395

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                  E  +   ++G  C    +                  A E+             
Sbjct: 396 EAARAGEEGRLVRTWLGRTCPPAARTT--------------DDAVEEAGIPVAGGSGTSG 441

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                    ++       +P   S   R  G  R   N   +    ++            
Sbjct: 442 GSGASGDSGEEAEGGRPWVPGHASADARARG--RFARNFVVQGSAADW------------ 487

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
             +  +LA      +    ++V   HDE++   P+ +  + 
Sbjct: 488 --ALLLLAALRRALSDRAAELVFFQHDEVIVHCPEEEARDV 526


>gi|325672986|ref|ZP_08152680.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
 gi|325556239|gb|EGD25907.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
          Length = 521

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 105/364 (28%), Gaps = 74/364 (20%)

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
           + ++ V   ++  E+ +     V+ +   E +    F   G+ L    +   + +     
Sbjct: 183 DDMLPVRLHQVADEVSAAFGRQVNPASQPEVVAA--FAREGIELASTRKYLLREI----- 235

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    +   R  A   A                        G +    W        
Sbjct: 236 -DHPAVEPLLRYRDLAKLHAAN----------------------GWTWLDAWV------- 265

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
              R +R                +     LQ I   +R+ V+A  G   V+AD   +E R
Sbjct: 266 ---RGNRFRPVYVPGGVVSGRWASRGGGALQ-IPKALRTSVVADPGHTFVIADAGQLEPR 321

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA M+G+     A    +DLY    A  F           RA  K+  L + Y   A  
Sbjct: 322 ILAAMSGDPRM-TAAAGTDDLYALVAAEVFGGD--------RAKAKIAILGVLYGATAGE 372

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + +                     + +  A               +   ++G AC    
Sbjct: 373 ARAL----------------LTLLRKRFPVAVQLVEDAARAGERGEVVHSWLGRACPPPS 416

Query: 508 KAW--------RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            +W        R + +R   +     +     + + +  ++    D  LV+ + D+  + 
Sbjct: 417 DSWWSNGDTHARGRFTRNFVVQATAAEWALCLLADLRRRLSAAPGDGELVFFQHDEVMVH 476

Query: 560 LMLP 563
              P
Sbjct: 477 TRRP 480


>gi|239929792|ref|ZP_04686745.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 577

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 96/341 (28%), Gaps = 56/341 (16%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           ++  L++    R    +      Q+  R  R   E     T     ++     LQ I   
Sbjct: 256 VKPLLEYKKLYRIW-VAHGWSWLQDWVRDGRFRPEFHAGGTVSGRWVSHGGGALQ-IPKV 313

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R F      
Sbjct: 314 IRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRVF------ 367

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   K+  L   Y   +    K  +                     +  A  +  
Sbjct: 368 --SGDRDRAKLAVLGAVYGQTSGDGLKNLAAL----------------RRRFPRAVAYVD 409

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                  E  +   ++G  C    +                  A E+             
Sbjct: 410 EAARAGEEGRLVRTWLGRTCPPAARTT--------------DDAVEEAGIPVAGGSGTSG 455

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                    ++       +P   S   R  G  R   N   +    ++            
Sbjct: 456 GSGASGDSGEEAEGGRPWVPGHASADARARG--RFARNFVVQGSAADW------------ 501

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
             +  +LA      +    ++V   HDE++   P+ +  + 
Sbjct: 502 --ALLLLAALRRALSDRAAELVFFQHDEVIVHCPEEEARDV 540


>gi|328553017|gb|AEB23509.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
          Length = 763

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 106/754 (14%), Positives = 216/754 (28%), Gaps = 146/754 (19%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAF------GFDD--HPVELWDCVHDPVMPQVLKEALEN 63
             +D    G+    +   + +F +        D+    V  +D     ++ QV+  AL  
Sbjct: 38  CVLDSETTGLHIIKDKPFMWVFGWMLPKEKRTDEIKGRVFAFD-SKAEILLQVI--ALTK 94

Query: 64  TDVTIVAHNSYFERTVL-------KACFNLD-----IPIHRWICTLVLARSNGLPSALKA 111
             V  V HN  ++  +L       K  + L      + + R+    V AR  G    LK 
Sbjct: 95  KCVMTVGHNVKYDLHMLINGGISEKVVYGLKNITDTMGLCRFSFDAVSARDGGDVLGLKK 154

Query: 112 VG------EALKLSSQKMEEGKEL-------IARFCKG---------------------- 136
           V       +A +   +  +E +++       +    K                       
Sbjct: 155 VSEKYIDPKAGEFEKEVKKELRKINDAKRNILKELLKPYKGWGLGKIKEAYKVKKRNEMD 214

Query: 137 --ETHECLYDRNKPNHRE----AWRL---FGEYCKGDVTVTRE----------------- 170
                +       P   E     W     F +Y + D  +  E                 
Sbjct: 215 YFTKEKKQRWLKVPEEIENVYFKWMEENPFADYSEVDRDIMMEYVHSDGIYTLELVEFTY 274

Query: 171 ---IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
              + ++ + +  +E +L      +   G  VD+   H+  +  + E  KL +EL  +  
Sbjct: 275 STVLKRKQKAILEQENKLIIELLKMERVGMKVDMPYLHSCFKKCEDEIQKLYEELWGI-V 333

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G   +      +  +   + G   E   ++  +      K    +  Q+     R  +  
Sbjct: 334 GEYFTVSQGTVIADYFEKKLGERPETTDKSFLK------KHKDDRVSQLITRLRRLEKWQ 387

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              ++ ++E    D            + +GR        Q  P+     EE +       
Sbjct: 388 STYISRIIEVAQYDNHFYTQYGQFN-TVSGRLGSDA---QQFPKERILTEEGELYEKENG 443

Query: 348 TSITSDPDPLQIISDCVRSCVIASEG--KKLVVADLAGIEARVLAWMA-----GEQWKLK 400
                 P   +I S   R   I   G   K+   DL+ IE R  A         +    +
Sbjct: 444 EGKA--PIEYEIFSP--RRAFIVEGGNYNKIAYFDLSQIELRAQANYTVLLKKPDLNLCR 499

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           A+   +  +  T            TK++R            + G   +      +    +
Sbjct: 500 AYMPFKCTHYIT-----GEEFRYDTKEER-----ARWYEKKEDGTSVWLLENGESWTPTD 549

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
             +           ++  + + ++  E   P              ++    R       +
Sbjct: 550 VHSETSHNTLMALAFKCVDKYKQYEHEKESPVDEKSFKKFWRYIGKMFNFMRNYGGGAKK 609

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +A E ++E   A+++      P V   + +             V   V  N   
Sbjct: 610 ----ASEALEVSMEIANALVSGWSNTFPEVSYYQKQ-------------VAAKVQKNSYA 652

Query: 580 LNTTTRQLTREYTYGG-KLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
            N   R      T    K+   +VQ    D+L   ++               +  +HDE+
Sbjct: 653 TNMYGRVYFLSNTDKAYKVGNYLVQGSCADMLKGYVIRIGEFLRENNCKTLPLANIHDEL 712

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
                  +E+    +  +M     W + +P+  +
Sbjct: 713 QFLVHKGEEWIFPHIKRIMEDV-EWMQ-VPVVVD 744


>gi|283457405|ref|YP_003361981.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283133396|dbj|BAI64161.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 668

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 124/438 (28%), Gaps = 66/438 (15%)

Query: 147 KPNHREAWRLFGEYCKGD-VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA-LA 204
            P H     L  E+             +RL  L++ E     +   I   G   +V    
Sbjct: 222 LPEHPVVRVLMREWLAQARAISESRHPERLRLLAAAESAGTLVAAEIGYYGIPFNVQAHH 281

Query: 205 HTLNQIVD---------VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
             L +++           +  +L ++++ + +    +    + L   L    G+ ++   
Sbjct: 282 EHLCELLGPRPVPGERPQKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTR 340

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
               +    +      +   + +  +R  +   +                      G + 
Sbjct: 341 SWELKSWADAIPAQRDKRWALIDPILRYKKLYRIWTAN------------------GWTW 382

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
              W                   L+           S    LQ+ ++ +R  V A EG+ 
Sbjct: 383 ADTWVSE----------GAFRPHLEVGGAATGRWGASGGGALQLPAE-IRQAVQAPEGQV 431

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY--ARSFNVAPAQVTKDQRAIGK 433
           L V D + IE R+LA ++ ++    A   G DLY      AR   V   +     R+  K
Sbjct: 432 LTVTDGSQIEPRILAALSRDEALASAGR-GADLYAGIAELARLKGVGLTE-----RSHAK 485

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           V  LA+ Y G +     +                       +  A  F            
Sbjct: 486 VGMLAIMYGGRSGEIGAL----------------LPHVAALFPQAMEFTERAARIGEAGG 529

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
               F+G     V + +R+  +  S    E  +A      +G+       +     +   
Sbjct: 530 QVTTFLGRTSPPVDERFREIVADRSSPAAE-SRAVSTARAHGRMTRNFIVQGTAAEWALC 588

Query: 554 DKNNLILMLPSGRSLVYR 571
               +   L S R     
Sbjct: 589 WMGAVRSRLLSERIFGMP 606


>gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 536

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 73/212 (34%), Gaps = 32/212 (15%)

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144
              +     L  + GL     ++ A+ E L L          L+A        T E +  
Sbjct: 336 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 392

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193
           R    +   W    E       ++  +F  L      E+ L +L              + 
Sbjct: 393 R----YGGEW---TEEAGERAALSERLFANLWERLEGEERLLWLYREVERPLSAVLAHME 445

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +DVA    L+  V  E  +L+ E+  L  G   +    ++L+  LF E GL    
Sbjct: 446 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 504

Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNR 280
            TE T +R     VL + ++  P   ++   R
Sbjct: 505 KTEKTGKRSTSAAVLEALREAHPIVEKILQYR 536


>gi|328883338|emb|CCA56577.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 571

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 97/318 (30%), Gaps = 81/318 (25%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             Q+  R  R   E     T      T+    LQ I   +R  V+A +G +LVVAD   +
Sbjct: 286 WLQDWVRDGRFRPEYLPGGTVSGRWTTNGGGALQ-IPKVIRRAVVADDGWRLVVADADQM 344

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +   ++     +DLY     R+F           R   K+  L   Y   
Sbjct: 345 EPRVLAAISRDPGLMEVAGHPDDLYTRLSDRAF--------SGDRDHAKIALLGAIYGQT 396

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           +    K  +                     +  A  +     +   E             
Sbjct: 397 SGDGLKNLAAL----------------RRRFPRAVAYVDEAAKAGEE------------G 428

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R+ + W             L +   + +  G+A  A                     LP 
Sbjct: 429 RLVRTW-------------LGRTSPRAVGAGEAEEAG--------------------LPQ 455

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRD--ILAEGMMNATKAG 621
                  + G       +   +        G+ T N +VQ  + D  +L    +  + AG
Sbjct: 456 EGGEQPAEEGEFVPGYASGNARAR------GRFTRNFVVQGSAADWALLMLAALRRSLAG 509

Query: 622 --YDIVLTVHDEIVCETP 637
              ++V   HDE++   P
Sbjct: 510 MRAELVFFQHDEVIVHCP 527


>gi|281306676|ref|YP_003345482.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
 gi|271277981|emb|CBH51587.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
          Length = 789

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 103/344 (29%), Gaps = 58/344 (16%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR---GTLQFLGA 313
           +T   VL +       A  + N + +  +       +     N DG ++   G LQ++G 
Sbjct: 391 STSGEVLKALATFGFAAGSLLNRKAQLDKDNGTYYISHE--YNKDGSIKKTKGMLQYIGP 448

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----------C 363
                              S  H  L+   T      +SDP+   +              
Sbjct: 449 ------------------DSIIHHSLNVAATITARLSSSDPNLQNLPRSDEDDDGVAKSR 490

Query: 364 VRSCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           V+    +   +   ++  D   +E  +LA ++G+Q  LK  + G D++    A       
Sbjct: 491 VKEMFTSRFGDDGVIIEVDYTALEVVMLAALSGDQALLKHLQNGTDMHCLRLAAKLKRPY 550

Query: 422 AQV--------------TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            ++               K QR   K    A  Y   A      A  TG++L      + 
Sbjct: 551 EEILAIAKDKHHPEHNSIKQQRTDIKPPSFAAQYGASASGI---AFATGVSLEYATEFLA 607

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---CERVKKAWRQKHSRVSELWNEL 524
           T +    +  A  F   ++            +          +   R  +          
Sbjct: 608 TEA--RLFPRAIAFRDVVRAEVERTGALPTGLMREQDDAGNFRVYRRGYYQADGGTCYSF 665

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            Q      E  K ++  K   +   + + +   L + L +GR +
Sbjct: 666 RQFDVWDAEARKRVMGFKPTQIANYWCQGESGYL-MTLSAGRVM 708


>gi|302553133|ref|ZP_07305475.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302470751|gb|EFL33844.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 560

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 26/210 (12%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           ++  L++    R    +      Q+  R  R   E     T     +T+    LQ I   
Sbjct: 253 VKPLLEYKKLYRIW-VAHGWSWLQDWVREGRFRPEFLAGGTVTGRWVTNGGGGLQ-IPKV 310

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R+F      
Sbjct: 311 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAF------ 364

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                RA  K+  L   Y   +    K  +                     +  A  +  
Sbjct: 365 --SGDRAQAKLAVLGAVYGQTSGDGLKNLAAL----------------RRRFPRAVAYVD 406

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                  E  +   ++G  C    +A  + 
Sbjct: 407 EAARAGEEGRLVRTWLGRTCPPAARATDEA 436


>gi|297192970|ref|ZP_06910368.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151581|gb|EFH31247.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 406

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 101/349 (28%), Gaps = 84/349 (24%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           ++  +++    R    +      Q+  R  R         +      T+    LQ I   
Sbjct: 101 VKPLIEYKKLYRIW-TAHGWSWLQDWVRDGRFRPGYLPGGSVSGRWTTNGGGALQ-IPKV 158

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A +G +LVVAD   +E RVLA ++ +   ++      DLY +   R+F      
Sbjct: 159 IRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHDGDLYTSLSDRAF------ 212

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   K+  L   Y   +    K  +                     +  A  +  
Sbjct: 213 --SGDRDHAKIALLGAIYGQTSGDGLKNLAAL----------------RRRFPRAVAYVD 254

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWR-QKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              +   E             R+ + W  +   R +   ++                   
Sbjct: 255 DAAKAGEE------------GRLVRTWLGRTSPRAAGAGDDDEAGI-------------- 288

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN-I 601
                               P          G       +T  +        G+ T N +
Sbjct: 289 --------------------PQEPVEAAPADGEFTPGYASTNARAR------GRFTRNFV 322

Query: 602 VQAVSRD--ILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASM 646
           VQ  + D  +L    +    AG   ++V   HDE++   P  +  + + 
Sbjct: 323 VQGSAADWALLMLAALRQATAGMRAELVFFQHDEVIVHCPAEEARDVAE 371


>gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 83/239 (34%), Gaps = 50/239 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D  L H L         +++ +L++L   +V                   +  
Sbjct: 1   ERNGWLLDQRLCHILCAKFKERMNEIESDLQALFPPIVEERYSEKTGKRLKDKVTVFNVG 60

Query: 235 CLEKLKTWLFLETGL--HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L  +  +   L    +              P+A QV    +   R    ++N
Sbjct: 61  SRQQVAERLSAKGAVWTELTPTGKPMVDEKTLKENSHVPEAAQVLEYLLLQKR--YAQVN 118

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSIT 351
           + +E +  DGR+ G +   GA  TGR +        +P   S   E+             
Sbjct: 119 SWLEHVQDDGRVHGRVTTNGAV-TGRMTHQNPNMAQVPSVNSEYGEDC------------ 165

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        R+C I  EG+KLV  D +G+E R+LA   G++        G D++ 
Sbjct: 166 -------------RNCWIVPEGRKLVGVDASGLELRMLAHYMGDEEFTNVLLRG-DIHT 210


>gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum]
          Length = 1213

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 118/389 (30%), Gaps = 42/389 (10%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++L   LEN  +  V+ N      +  A  N            +LA     P + +    
Sbjct: 664  ELLIRILENEAIKKVSFNCQESFKIFFAY-NTYFSPKNIWDPKILAWMY-KPESKRVDMS 721

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC-KGDV-------- 165
             L +  Q     K  +A   K        D N  N   +  +    C   D+        
Sbjct: 722  TLVVEYQIDSHDKLEMANVIKNLDQHT--DNNNNNINPSMTVSNYTCLANDIRNGSILQL 779

Query: 166  TVTREIFK-RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             +  ++   +LEPL  +E ++  +   +   G         T    +D     + ++   
Sbjct: 780  ILEHKLSDAKLEPL--QEMQIIPILSKMEYYGVSFCSEALKTCQVHIDSLLENITKQFHL 837

Query: 225  LTYGL--VSSSRCLEKLKTWLFLETGLH------LEDLTETTCQRVLSSNKKLTPQAIQ- 275
            L  GL        L +    L     +       + D    T ++    +  L  +  + 
Sbjct: 838  LRDGLGIKMDDFGLSQRGVVLSCINQIKPSRIPQIPDAKAQTLRKFAEIDLSLKEEKAKN 897

Query: 276  ------VFNNRMRASRSAVLKLNTL--VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   R+        + N +   + ++    +  +    G + TGR S      Q
Sbjct: 898  GDMENLIMACRIYLDHKRFSQFNNIFVKKYISVGQNIYTSWNHTG-TATGRLSSSSPNVQ 956

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD--------CVRSCVIASEGKKLVVA 379
             +PR   + +  D+           D    +              R C     G  +V  
Sbjct: 957  QIPRNVANIKVSDKEDGDGNDYDDDDVSDDEEEGTTNASTVHINARDCFRTRPGYTMVAL 1016

Query: 380  DLAGIEARVLAWMAGEQWKLKAFETGEDL 408
            D + IE RV+A  + ++  L  F+   D 
Sbjct: 1017 DYSQIELRVMAHQSDDEHLLHFFQQDADF 1045


>gi|32442287|gb|AAP82214.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 121/373 (32%), Gaps = 50/373 (13%)

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETH-ECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L      ++L++  +++ +E    F K     E    R           F    +  + +
Sbjct: 44  LDYCVRDVQLNAVVLKKLREESRGFSKQCIAIEQGVARIMKQQEV--NGFKFDLQSALLL 101

Query: 168 TREIFKRLEPLSSKEQELW---YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223
             ++ ++ + +  +    +   ++D  +       D  L+       + +R       E 
Sbjct: 102 LAKLREKKQSIEDEVHNTFKPKWVDDKLVKPYIKKDGDLSKRGLTDDEYQRCLDTNNFEP 161

Query: 224 -SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFN 278
                    +    +++  +L    G   E  T T      ++ LS+   +  +A  + +
Sbjct: 162 FMRQTLQDFNLGSRKQIGEYLID-FGWKPERFTPTGQPIVDEKTLSAITHIH-EAKLIAD 219

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
             +   R A  ++++ VE +  DGR+ G +   GA  TGR +        +P        
Sbjct: 220 FLLLQKRIA--QVDSWVEGVQEDGRVHGFVIPNGAI-TGRMTHRNPNVAQVP-------- 268

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                          P          R+C    EG  L+  D +G+E R+LA    ++  
Sbjct: 269 -----------AVYSPY-----GKECRACWTVEEGNVLIGVDASGLEIRMLAHYMNDEEY 312

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
                 G D++        N   A++  + R   K    AL Y  G +    +   +  +
Sbjct: 313 TNEILNG-DIHTA------NQKLAKL--ESRDKAKTFIYALMYGAGDEKLGSVVGGSTSD 363

Query: 459 LNTFAHLVKTNSA 471
                     N  
Sbjct: 364 GKRARQYFFDNKP 376


>gi|312062862|gb|ADQ12724.1| DNA polymerase A domain-like protein [Acinetobacter phage phiAB1]
          Length = 494

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 127/425 (29%), Gaps = 94/425 (22%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T    L    K T +A Q   +  +  +             +  G+  G LQ++     
Sbjct: 107 STGDDALDLVAKFT-EAAQPLRDMKKLIKDTTTYYL----VEDDKGKQSGMLQYVEP--- 158

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEG 373
                              H +L+   T       S P+   +  D    V+   ++  G
Sbjct: 159 ---------------NGIIHHQLNNCATVTGRLSGSKPNLQNVPRDGTSKVKEMFVSRFG 203

Query: 374 K--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA--------RSFNVAPAQ 423
              +LV  D + +E   LA ++G++  L+    G D++    A          F     +
Sbjct: 204 SDGRLVECDYSALEVVALASISGDKNLLQQLIDGTDMHCYRLAGALGEDYETVFEKCHDK 263

Query: 424 VTKDQ------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
              +       R   K    A  Y          AS  G++ +T   L          E+
Sbjct: 264 SHPEHKKYKQLRTDIKPRAFANQYG---------ASAMGISFSTGCSL----------EE 304

Query: 478 AENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           AE F    ++  PE +   +  +    E+   +   +   V+ +W    + F + +    
Sbjct: 305 AEQFKETERKLFPESSTFSERIVRPQVEQNGLSMPMESELVNGIWKHFRRGFFKALSGTC 364

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
               +  + V  V  K D  +  +         Y   G                      
Sbjct: 365 YSFRQFPKYVKGVGEKYDYKDTQI-------ANYPIQGEASF------------------ 399

Query: 597 LTENIVQ-AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE--FNASMLYHLMTS 653
               IVQ A  R I      +        + TVHD I  +  D +      + +  +M S
Sbjct: 400 ----IVQCACGRVIRWLIGNDFFGGKALPINTVHDCIQLDCADRETAIMVGTKVKEIMDS 455

Query: 654 NPSWA 658
            P W 
Sbjct: 456 TPKWM 460


>gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM]
          Length = 399

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 115/371 (30%), Gaps = 66/371 (17%)

Query: 151 REAWRLFGE----YCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVD 200
            +AW    E    YC  DV +T +++  L+P          EQEL  +       G   D
Sbjct: 53  EDAWEKLSEAMVEYCIQDVELTHKLYGILKPKLQSRKALSLEQELTVICNRQERHGIPFD 112

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
           V  A      +   R++L  EL             ++K   W   E     E  T+ +  
Sbjct: 113 VDRAQLFYSDLCGRRSELQTEL-------------IDKFGWWYTGEL---REPKTKPSYS 156

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW- 319
           +++       P++ Q    R++   +      T       D  +   L++  A     + 
Sbjct: 157 KLIKVV--FNPRSRQHIAKRLKDFYNWKPTEFTPSGEPKVDESVLSKLEYPEAKLLTEYL 214

Query: 320 --SGCVFPP-------QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS------DCV 364
             +  +            L R  R H  ++ + +       S P+  QI S         
Sbjct: 215 LVNKRISQLAEEDQAWLKLERNGRIHGRVNTMGSVTSRCSHSHPNLAQIPSVSAPYGKEC 274

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWM-----AGE--QWKLKAFETGEDLYVTTYARSF 417
           R    A EG + +  D++G+E R LA        G+  +  L+      D++        
Sbjct: 275 RELFCAPEGFRFLGVDISGLELRCLAHYMALFDNGDYGKKLLED-----DIHT------- 322

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V         R   K    A  Y  G +    +    G +        +  S     E 
Sbjct: 323 -VNQNAAGLSTRNQAKTFIYAFLYGAGDEKIGSIVG--GSSEEGAKLKKRFLSQIPALEK 379

Query: 478 AENFCRWMQEN 488
             N  +   + 
Sbjct: 380 LRNAVKKKAQK 390


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 19/200 (9%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIE 385
            R  R H+ +D   T    ++++ P    I  D    VR   ++  G K   V  D + +E
Sbjct: 1067 RDGRVHQHIDMTATTTSRTVSAYPSCQNIPKDDKSSVRRLFVSRFGSKGRCVEVDYSQLE 1126

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----------QRAIGKVM 435
              VLA +  +    K   +G D +V   A    +   ++ +            R   K  
Sbjct: 1127 IVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRKTAKQF 1186

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G         TTG+ +      ++  N             R +        +
Sbjct: 1187 SFQRLYGAGVPLLH---KTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGL 1243

Query: 495  EDLFIGTACERVKKAWRQKH 514
               FI      ++ + R + 
Sbjct: 1244 PTSFIAEMPTGLRMSLRTRD 1263


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 19/200 (9%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIE 385
            R  R H+ +D   T    ++++ P    I  D    VR   ++  G K   V  D + +E
Sbjct: 1066 RDGRVHQHIDMTATTTSRTVSAYPSCQNIPKDDKSSVRRLFVSRFGSKGRCVEVDYSQLE 1125

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----------QRAIGKVM 435
              VLA +  +    K   +G D +V   A    +   ++ +            R   K  
Sbjct: 1126 IVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRKTAKQF 1185

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G         TTG+ +      ++  N             R +        +
Sbjct: 1186 SFQRLYGAGVPLLH---KTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGL 1242

Query: 495  EDLFIGTACERVKKAWRQKH 514
               FI      ++ + R + 
Sbjct: 1243 PTSFIAEMPTGLRMSLRTRD 1262


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            infantum JPCM5]
          Length = 1430

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 19/200 (9%)

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIE 385
            R  R H+ +D   T    ++++ P    I  D    VR   ++  G K   V  D + +E
Sbjct: 1067 RDGRVHQHIDMTATTTSRTVSAYPSCQNIPKDDKSSVRRLFVSRFGSKGRCVEVDYSQLE 1126

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----------QRAIGKVM 435
              VLA +  +    K   +G D +V   A    +   ++ +            R   K  
Sbjct: 1127 IVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRKTAKQF 1186

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G         TTG+ +      ++  N             R +        +
Sbjct: 1187 SFQRLYGAGVPLLH---KTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGL 1243

Query: 495  EDLFIGTACERVKKAWRQKH 514
               FI      ++ + R + 
Sbjct: 1244 PTSFIAEMPTGLRMSLRTRD 1263


>gi|312195229|ref|YP_004015290.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
 gi|311226565|gb|ADP79420.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
          Length = 586

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 72/236 (30%), Gaps = 56/236 (23%)

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           +  L + +     L        G+ + D    T    L +     P   ++   R     
Sbjct: 257 SVDLRNPASVRAALAAV-----GIDVPD----TRSGRLRALSAAHPVIDELLAWRKAERI 307

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           +       L   + +DGRLR           GRW G                        
Sbjct: 308 ATTYGHRWLATHVGADGRLR-----------GRWHGSD--------------------GA 336

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                      L  +   +R  V+A  G + V ADL  IE RVLA ++G+    +A    
Sbjct: 337 AGRMTADA--GLHNLPAEMRVAVVAEPGHRFVRADLGQIEPRVLAVVSGDPELTRATRQD 394

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK----AFQKMASTTGL 457
            DLY    AR             R   KV  LA  Y         A ++M  T G+
Sbjct: 395 -DLYAPVAARL---------GVDRPTAKVAVLAAMYGQTTGAAGQALRQMRETYGV 440



 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD--TDE 641
                YG      +VQ  + ++     +   +A    G  IVL +HDE++ + P    + 
Sbjct: 488 RAAAAYGRFARNAVVQGAAAELFKAWAVTVRQALIPLGGTIVLCLHDELLLQVPVQTAEA 547

Query: 642 FNASMLYHLMTSNPSWAKG 660
             A+    L  +   WA G
Sbjct: 548 AVAATHRALDATAAHWAAG 566


>gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 565

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 56/176 (31%), Gaps = 25/176 (14%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R                T+    LQ I   VR  V+A  G +LVVAD A +E R+LA
Sbjct: 297 REGRFRPRYVVGGAVSGRWTTAGGGALQ-IPKVVRRAVVADPGWRLVVADAAQMEPRILA 355

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +AG+   L      +DLY     R+F           R   K+  L   Y   +    K
Sbjct: 356 AVAGDAGLLDVAAKADDLYAAVSDRAF--------AGDRDRAKIAVLGAIYGQTSGDGLK 407

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             +                     +  A  +         E  +   ++G  C  V
Sbjct: 408 NLAAL----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPV 447


>gi|294083961|ref|YP_003550718.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663533|gb|ADE38634.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 587

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 98/645 (15%), Positives = 186/645 (28%), Gaps = 141/645 (21%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVL-KACFNLDIPIHRWICT 96
           D P E W       +   +K+  E T++    HN    +   L K   N  +   +   T
Sbjct: 28  DDPKETW-VFGPNDIKAGMKKLAEATEII--GHNILGHDVPALMKVYPNFSLDGVKLTDT 84

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           LVL+R              L +     +       +       E   D  +      W  
Sbjct: 85  LVLSRLITADLRNDDYERILSIDDFPRKYYGSHSLKAWGYRLGEYKGDFGEQTDWSEWTQ 144

Query: 157 -FGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
              +YC+ DV V   ++K L+P S        E ++  +   I   G+  +V  A  L  
Sbjct: 145 GMQDYCEQDVVVNYAVWKHLDPDSYSQRAIDFEHKMAEICHRIGKAGWHFNVEKAGILYG 204

Query: 210 IVDVERTKLDQELESL----TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
            +  E+ +L+ EL+ L    T   +   +   K   ++  E  +  +++T          
Sbjct: 205 QLAGEKAQLESELKELFPPWTKEEIFIPKRNNKTLGYVADEPFIKCKEIT---------- 254

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS----- 320
                P + +     +        +  T       D  +   L +  A +  R       
Sbjct: 255 ---FNPNSRKHIQRCLMDKYDWKPRQFTYSGDAKIDEGVLSRLPYPEAKKLARSFLLQKR 311

Query: 321 ------GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV------RSCV 368
                 G     + +   +  H  ++        +   + +  Q+ S         R   
Sbjct: 312 IGMLAEGNNAWLRLVEGNTLCH-VINPNGAVTGRATHFNFNTAQVPSVRAPYGKECRELF 370

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
              EG  LV +DL+G+E R LA +  +Q K        D+++             +    
Sbjct: 371 GVPEGYSLVGSDLSGVELRCLANVLQDQGKYANIILNADIHLA--------NMHSMGLTS 422

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K     + Y GG     ++    G                                
Sbjct: 423 RDQAKTAIYCMIYGGGD---ARLGEVVGKGAAEG-------------------------- 453

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                            ++  + + +   ++L  +L Q      + G  +    R+    
Sbjct: 454 ---------------RTLRNNFMKANPAFADLVRQLKQVVT---KRGHLVGLDGRKLA-- 493

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
               +    L ++L S  +L               +++           TE   Q +  +
Sbjct: 494 ---VRGHAQLNVLLQSAAAL--------------LSKKWVELID-----TEIATQGIDAE 531

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653
           I+A                VHDE+  +    DE N   +   M  
Sbjct: 532 IIAW---------------VHDEVQIKVRKGDEENVGHITGRMAE 561


>gi|148272793|ref|YP_001222354.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830723|emb|CAN01663.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 556

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 129/433 (29%), Gaps = 67/433 (15%)

Query: 93  WICTLVLARSN-------GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           W  T   AR+             L+     L+LS+Q  +   EL              DR
Sbjct: 52  WDDTAAWARTLIAAGVRVARCHDLRLCHAILRLSTQTADS--ELARLPAGPW------DR 103

Query: 146 NKPNHREAWRLFGEYCKGDV-------TVTREIFKRLEPLSSK-EQELWYLDQTINDRGY 197
             P+ RE       +   D         +  E+  +LE +++  E     L       G 
Sbjct: 104 AAPSEREPSASATLFDDLDTSDGRSPDELVAELRLQLEAVAASAEPGRLRLLLAAESAGA 163

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            V   ++             L  +L         +   L +L   +     L   DL   
Sbjct: 164 LVAAEMSADGLPWDTSVHDALLVDLLGGRPAHGGAPPALLRLAARVREI--LRAPDLNVD 221

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           +   VL + ++    A       ++         + ++ ++    RL   L   G +   
Sbjct: 222 SPPDVLRALRRAGIDAASTRQWELQEI------DHPVIASLLEHKRLSRLLTANGWTWME 275

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
            W           R  R H E             S    LQ +   +RS V A  G +LV
Sbjct: 276 TWI----------RDGRFHPEYVPGGVVTGRWAASGGGALQ-LPRQIRSAVRADRGWRLV 324

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
           VAD A +E RVLA +A ++    A   G DLY         +  A V  D RA  KV  L
Sbjct: 325 VADAAQLEPRVLAALAEDRAMADAGR-GTDLYQ-------GLVDAGVV-DTRAHAKVAML 375

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
              Y   +    ++                       +  A  +           A+   
Sbjct: 376 GAMYGATSGESGRLM----------------PRLVRAYPRATGYVERAARAGESGAVVST 419

Query: 498 FIGTACERVKKAW 510
            +G +      AW
Sbjct: 420 RLGRSSPPPGDAW 432


>gi|47934644|gb|AAT39760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 41/186 (22%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASR 285
           V +    +++   L  + G   +D+T T   +V    L  N  + P+A  V      + R
Sbjct: 56  VFNPGSRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEYLTLSKR 113

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             +  + + ++A+  DGR+ G +   GA                                
Sbjct: 114 IGM--VRSWLDAVGDDGRIHGRVNTCGA-------------------------------I 140

Query: 346 LPTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 S P+  QI S+ + RSC    EG KLV  D +G+E R+LA    +         
Sbjct: 141 TGRMTHSSPNMAQIPSESLYRSCFTVDEGNKLVGIDASGLELRMLAHYMDDPEYTDLILH 200

Query: 405 GEDLYV 410
           G D++ 
Sbjct: 201 G-DIHT 205


>gi|48697101|ref|YP_024759.1| DNA polymerase I [Pseudomonas phage PaP2]
 gi|46369536|gb|AAS89617.1| p31 [Pseudomonas phage PaP2]
          Length = 801

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/521 (11%), Positives = 135/521 (25%), Gaps = 88/521 (16%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV---LARSNGLPSALKAVG 113
             + +  +D+    HN  ++              + WI   +    +  + L   +  + 
Sbjct: 223 FLQMVMRSDIPKCFHNGLYDSF---HLMRYHAAPNNWIFDTMGLSHSWYSELSKDVGFLC 279

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-EIF 172
             L    ++ +   +      +                     + +Y   D  +    + 
Sbjct: 280 SWLLYDHKEWKYMAD------REHKAIGGI-----------ESYWKYAAYDTHMMMRALI 322

Query: 173 KRLEPLSSKEQELWYLDQTI-------NDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           + L+   +     +     +          G+ V+      L +  +       ++L  +
Sbjct: 323 ELLKNGDTWMLRNYKKQFPLVYPSLYGAFEGFRVNNETRLKLVEKAEERLESALKDLRIM 382

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL---SSNKKLTPQAIQVFNNRMR 282
           T     +    +++  +L+   G       ++  +      +      P    +F++R+ 
Sbjct: 383 TDDPEFNPGSPDQVSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHP-IFALFSDRVN 441

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                   L+T       + RL  +L   G + TGR++                      
Sbjct: 442 NYSLEKKALSTYFSFRQWNSRLLYSLDPFG-TDTGRFASRA------------------- 481

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                 S       +Q      +      +G      D +  EA   A+++     +KA 
Sbjct: 482 ------SAAWIGTQIQNQPVYAKEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKAL 535

Query: 403 E--------TGEDLYVTTYARSFNVAPAQVTKDQRAIG-KVMELALGYQGGAKAFQKMAS 453
                      +D Y       F++    VTK+ R    K +     Y  G         
Sbjct: 536 CFPDLDNEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGP-------- 587

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                  TF   +                  +    P+      F     +++  A+   
Sbjct: 588 ------ETFIDNLDDIQTLFLAAKILGVVLTLNPKAPKEKTPKDF----AKQLLDAYHIP 637

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
              V + W  +      T +    I    R         K 
Sbjct: 638 FPEVQQWWESIFMEVLTTNKLINPITGHVRYFFGDPRRNKK 678


>gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 565

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 25/176 (14%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R                T+    LQ I   VR  V+A  G +LVVAD A +E R+LA
Sbjct: 297 REGRFRPRYVVGGAVSGRWTTAGGGALQ-IPKVVRRAVVADPGWRLVVADAAQMEPRILA 355

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +AG+   L      +DLY     R+F           R   K+  L   Y   +    K
Sbjct: 356 AVAGDTALLDVAAKADDLYAAVSDRAF--------AGDRDRAKIAVLGAIYGQTSGDGLK 407

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             +                     +  A  +         E  +   ++G  C  +
Sbjct: 408 NLAAL----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPL 447


>gi|333025332|ref|ZP_08453396.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332745184|gb|EGJ75625.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 555

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 25/176 (14%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R                T+    LQ I   VR  V+A  G +LVVAD A +E R+LA
Sbjct: 287 REGRFRPRYVVGGAVSGRWTTAGGGALQ-IPKVVRRAVVADPGWRLVVADAAQMEPRILA 345

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +AG+   L      +DLY     R+F           R   K+  L   Y   +    K
Sbjct: 346 AVAGDTALLDVAAKADDLYAAVSDRAF--------AGDRDRAKIAVLGAIYGQTSGDGLK 397

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             +                     +  A  +         E  +   ++G  C  +
Sbjct: 398 NLAAL----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPL 437


>gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp.
           SA3_actG]
          Length = 555

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 25/176 (14%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R                T+    LQ I   VR  V+A  G +LVVAD A +E R+LA
Sbjct: 287 REGRFRPRYVVGGAVSGRWTTAGGGALQ-IPKVVRRAVVADPGWRLVVADAAQMEPRILA 345

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +AG+   L      +DLY     R+F           R   K+  L   Y   +    K
Sbjct: 346 AVAGDTALLDVAAKADDLYAAVSDRAF--------AGDRDRAKIAVLGAIYGQTSGDGLK 397

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             +                     +  A  +         E  +   ++G  C  +
Sbjct: 398 NLAAL----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPL 437


>gi|258539931|ref|YP_003174430.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
 gi|257151607|emb|CAR90579.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
          Length = 191

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 78/261 (29%), Gaps = 91/261 (34%)

Query: 415 RSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           + F +  P +VT D R   K     + Y         +A   G++       +       
Sbjct: 2   KIFGLDSPDEVTPDMRRQAKATNFGIVYGISDY---GLAQNIGISRKQAKAFIDGYF--- 55

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                             + + + H       + +    ++  E
Sbjct: 56  ----------------------------------EQYPKVH-------DYMENMVKKARE 74

Query: 534 NG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           +G    +  +RR +P ++               R+   R     R+ +NT          
Sbjct: 75  DGYVETLFHRRRYLPQIHS--------------RNFNLRKF-AERTAMNTP--------- 110

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DI+   M+   KA         ++L VHDE++ E P  +      
Sbjct: 111 ---------IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQ 161

Query: 647 LY-HLMTSNPSWAKGLPLKAE 666
           L   +M S  S A  +PLK E
Sbjct: 162 LVPKIMDSAVSLA--VPLKVE 180


>gi|29831179|ref|NP_825813.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29608293|dbj|BAC72348.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 564

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           ++  L++    R    +      Q+  R  R   E     T     +T+    LQ I   
Sbjct: 256 VKPLLEYKKLYRIW-VAHGWSWLQDWVRDGRFRPEYLPGGTVTGRWVTNGGGALQ-IPKV 313

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R+F      
Sbjct: 314 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAF------ 367

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                RA  K+  L   Y   +    K  +            V 
Sbjct: 368 --SGDRAQAKLAVLGAIYGQTSGDGLKNLAALRRRFPKAVAYVD 409


>gi|159476518|ref|XP_001696358.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158282583|gb|EDP08335.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 894

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 85/303 (28%), Gaps = 58/303 (19%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+  +A  G+ LV AD + IE R+LA ++                              +
Sbjct: 616 RAAFVAPAGRLLVSADYSQIELRLLAHLS------------------------------I 645

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           +   R   K +  A+ Y    +   +  S  G+ +     L         +       + 
Sbjct: 646 SSRDREQAKRIIYAIIYGMSPQGLAQALSDHGVEVKEATAL------RSSFLRHFAGVQS 699

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT-IENGKAIIARKR 543
              +   HA    FI T     ++      S    L  E  +    + ++   A + +  
Sbjct: 700 FITSSLHHARRHGFITTGLLGRRRPISGLASNDVRLRAEAERKVVNSIVQGSAADLIKMA 759

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
             +   Y                S       N +        Q T         T     
Sbjct: 760 MTMWGTY----------------SHPPAAGANEQQKQKQPQPQQTGGAAGAATGTRAAAT 803

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH---LMTSNPSWAKG 660
             +  +         +   D++ ++HDEI+ E     E    ++     LM      A  
Sbjct: 804 DAAPQLPPGCPPPLEEGCVDLIGSIHDEILFECDARPEVLQRLVAAVRCLMCGVV--ALD 861

Query: 661 LPL 663
           +PL
Sbjct: 862 VPL 864


>gi|317124628|ref|YP_004098740.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
 gi|315588716|gb|ADU48013.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
          Length = 557

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 84/531 (15%), Positives = 135/531 (25%), Gaps = 153/531 (28%)

Query: 154 WRLFGEYCKGDVTVTREIF---------------KRLEPLSSKEQELWYLDQTINDRGYC 198
           W    E       +  EI                +RL      E     L   +   G  
Sbjct: 112 WATTTERLARLAHLALEIQRVQEASLRERAGGRAERLIRTVWSESAAAVLCLELERDGLP 171

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTY----------------GLVSSSRCLEKLKTW 242
           VD   A  L       R + D +   +                   L + +     L++ 
Sbjct: 172 VDRLAAEDLISAAAGPRPRDDADAARIRALRDQVVLRHARGGDRTDLRNPAHVRAMLQSV 231

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
                G+ + +    T   VL   +   P    + + R     +       L E +  D 
Sbjct: 232 -----GVDVPN----TRAWVLEPYRHTHPLVDALLSWRKDERIATTYGYRWLDEHVGGDD 282

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           RLR           G W+ C                                + L  +  
Sbjct: 283 RLR-----------GAWTACD--------------------GAAGRMTAQ--NGLHNLPA 309

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R  + A      V ADL  +E RVLA ++ ++   +A  +  DLY            A
Sbjct: 310 PLRPAIRAEPQHVFVRADLGQVEPRVLAVVSEDRAFAEATRSD-DLYA---------PVA 359

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R++ KV  LA  Y   + A  +            A+ V        + D     
Sbjct: 360 DKLGVDRSVAKVAVLAAMYGQRSGAAGEALKDL-----EAAYPVAMGVLDRAYAD----- 409

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                   ++  R    R+         A + T   G A    +
Sbjct: 410 ---------------------GVARRPLRTFGGRLIRF-GSAGDAADPTRAEGHADQEGE 447

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                               PSG  L       +R   +    +  R           I+
Sbjct: 448 --------------------PSGIRL-----DGDRGAADAARGRFAR---------NAII 473

Query: 603 QAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLYH 649
           Q  + ++          A    G  IVL +HDEI+   P +    A     
Sbjct: 474 QGSAAELFKAWAATVRHAVRPLGGQIVLCLHDEILVHVPRSRAEEARRAVE 524


>gi|147917349|ref|YP_001218832.1| DNA polymerase [Pseudomonas phage 119X]
          Length = 801

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/521 (11%), Positives = 136/521 (26%), Gaps = 88/521 (16%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV---LARSNGLPSALKAVG 113
             + +  +D+    HN  ++              + WI   +    +  + L   +  + 
Sbjct: 223 FLQMVMRSDIPKCFHNGLYDSF---HLMRYHAAPNNWIFDTMGLSHSWYSELSKDVGFLC 279

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-EIF 172
             L    ++ +   +      +                     + +Y   D  +    + 
Sbjct: 280 SWLLYDHKEWKYMAD------REHKAIGGI-----------ESYWKYAAYDTHMMMRALI 322

Query: 173 KRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           + L+           K+  L Y        G+ V+      L +  +       ++L  +
Sbjct: 323 ELLKNGDIWMLRNYKKQFPLVYPSLYGAFEGFKVNNETRLKLVEKAEERLESALKDLRIM 382

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL---SSNKKLTPQAIQVFNNRMR 282
           T     +    +++  +L+   G       ++  +      +      P    +F++R+ 
Sbjct: 383 TDDPEFNPGSPDQVSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHP-IFALFSDRVN 441

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
                   L+T       + RL  +L   G + TGR++                      
Sbjct: 442 NYSLEKKALSTYFSFRQWNSRLLYSLDPFG-TDTGRFASRA------------------- 481

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                 S       +Q      +      +G      D +  EA   A+++     +KA 
Sbjct: 482 ------SAAWIGTQIQNQPVYAKEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKAL 535

Query: 403 E--------TGEDLYVTTYARSFNVAPAQVTKDQRAIG-KVMELALGYQGGAKAFQKMAS 453
                      +D Y       F++    VTK+ R    K +     Y  G         
Sbjct: 536 CFPDLDNEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGP-------- 587

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                  TF   +                  +    P+      F     +++  A+   
Sbjct: 588 ------ETFIDNLDDIQTLFLAAKILGVVLTLNPKAPKEKTPKDF----AKQLLDAYHIP 637

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
              V + W  +      T +    I    R         K 
Sbjct: 638 FPEVQQWWESIFMEVLTTNKLINPITGHVRYFFGDPRRNKK 678


>gi|47934656|gb|AAT39766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 41/186 (22%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASR 285
           V +    +++   L  + G   +D+T T   +V    L  N  + P+A  V      + R
Sbjct: 56  VFNPGSRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEYLTLSKR 113

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             +  + + ++A+  DGR+ G +   GA                                
Sbjct: 114 IGM--VRSWLDAVGDDGRIHGRVNTCGA-------------------------------I 140

Query: 346 LPTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 S P+  QI S+ + RSC   ++G KLV  D +G+E R+LA    +         
Sbjct: 141 TGRMTHSSPNMAQIPSESLYRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDPILH 200

Query: 405 GEDLYV 410
           G D++ 
Sbjct: 201 G-DIHT 205


>gi|145595499|ref|YP_001159796.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
 gi|145304836|gb|ABP55418.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
          Length = 592

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 56/172 (32%), Gaps = 12/172 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R   E            T     LQ I   +R  V+A  G   VVAD   +E R+LA
Sbjct: 312 RDGRFRPEYVPAGVVSGRWATRGGGALQ-IPKVIRRAVVADPGWTFVVADAGQLEPRILA 370

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G+     A   G DLY      +F           RA  KV  L   Y     +   
Sbjct: 371 AVSGDTRLAAAARAG-DLYAALADDAFGGD--------RARAKVALLGAMYGQTGGSAAP 421

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                  N       V+T +   E  +      W+    P  +++ +   T 
Sbjct: 422 ALEVLRRNYPAAFGYVETAARSGEAGELVRS--WLGRTCPPGSVDRVGEDTV 471


>gi|156101137|ref|XP_001616262.1| DNA polymerase 1 [Plasmodium vivax SaI-1]
 gi|148805136|gb|EDL46535.1| DNA polymerase 1, putative [Plasmodium vivax]
          Length = 1221

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 107/323 (33%), Gaps = 44/323 (13%)

Query: 224  SLTYGLVSSSRCLEKLKTWLFL---ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            SL  G       L +L   +        L   + T       +  N+ +T +  +     
Sbjct: 732  SLAMGTSEEMMPLPQLNNTINEMRRSKNLQTNNKTLKLIVDEIERNEHITEKEKEKIKKI 791

Query: 281  M---RASRSAVLKLNTLVEAMN-----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            +   +  R +       +E +         ++      +GAS TGR S      QN+   
Sbjct: 792  ISNVKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQIGAS-TGRLSCEQPNLQNIHSR 850

Query: 333  SRSHEEL------------------DQIITHLPTSITSDPDPL--QIISDCVRSCV-IAS 371
             R    L                  +Q   +  +      +    +       +C     
Sbjct: 851  FRCAVSLKGGEVGGEERGSGERGIANQCSANRGSVEVGGNNLTTAENPPPANFTCEGAPP 910

Query: 372  EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
            +G+ L+  D   +E  V+A+++ +   LK  ++G D++V T    FN    QVT + R +
Sbjct: 911  DGENLITFDYKQMELFVMAYLSFDVQLLKMLQSG-DVFVETAKVLFNTT--QVTSELRRM 967

Query: 432  GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             K +   + Y         +A +  ++    ++L+  ++  + + +   F +  +     
Sbjct: 968  TKTVIYGILYGQTEN---GLAKSLLISEGMASNLI--SNFFQVFPNVYRFMQMQKILLKH 1022

Query: 492  HAIEDLFIGT---ACERVKKAWR 511
                   IG        +K  +R
Sbjct: 1023 MNRVYTLIGRKRVIEPTIKNKYR 1045


>gi|158315552|ref|YP_001508060.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
 gi|158110957|gb|ABW13154.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
          Length = 673

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 60/200 (30%), Gaps = 43/200 (21%)

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
             T    LS+ + + P    +   R     +       L   + +DGRLRG  ++ G+  
Sbjct: 357 PDTRSGRLSALRGVHPVVEALLAWRKAERIATTYGYRWLDTHVGADGRLRG--EWRGSDG 414

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
                       NLP                                 +R  VIA  G +
Sbjct: 415 AAGRMTAAAGLHNLPAD-------------------------------LRVVVIAEPGYR 443

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            V ADL  IE RVLA ++G+    +A     DLY    A              R   KV 
Sbjct: 444 FVRADLGQIEPRVLAVVSGDPELTRATRQD-DLYAPVAASL---------GVDRPTAKVA 493

Query: 436 ELALGYQGGAKAFQKMASTT 455
            LA  Y        +     
Sbjct: 494 VLAAMYGQTTGVAGQALRQM 513


>gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 45/218 (20%)

Query: 203 LAHTLNQIVDVERTKLDQELESLTYG------LVSSSRCLEKLKTWLFLETGLHLEDLTE 256
           +   + ++ +V    +++     T         V +    +++   L    G+  E  TE
Sbjct: 23  MGEIVTELQEVFPPIVEERWSEKTGKRLKDKVEVFNPASRQQIARRL-ESKGVVWEKRTE 81

Query: 257 TTCQRVLSSNKK---LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
                V  +        P+A+ +        RSA++K    ++A  SDGR+ G +   G 
Sbjct: 82  KGNIIVDETTLGAYVDVPEAVLILEYLTLGKRSAMVK--GWLDAYESDGRIHGYVNSNG- 138

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASE 372
                                         T       S+P+  QI S    RSC +  +
Sbjct: 139 ------------------------------TVTGRMTHSNPNMAQIPSGAEYRSCFVVPQ 168

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
           G+KLV  D +G+E R+LA    +    +    G D++ 
Sbjct: 169 GRKLVGVDASGLELRMLAHYMRDDAFTQEILDG-DIHT 205


>gi|47934670|gb|AAT39773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 41/186 (22%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASR 285
           V +    +++   L  + G   +D+T T   +V    L  N  + P+A  V      + R
Sbjct: 56  VFNPGSRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEYLTLSKR 113

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             +  + + ++A+  DGR+ G +   GA                                
Sbjct: 114 IGM--VRSWLDAVGDDGRIHGRVNTCGA-------------------------------I 140

Query: 346 LPTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 S P+  QI S+ + RSC   ++G KLV  D +G+E R+LA    +         
Sbjct: 141 TGRMTHSSPNMAQIPSESLYRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDLILH 200

Query: 405 GEDLYV 410
           G D++ 
Sbjct: 201 G-DIHT 205


>gi|32141203|ref|NP_733604.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|24413788|emb|CAD55317.1| putative DNA polymerase I [Streptomyces coelicolor A3(2)]
          Length = 563

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 26/202 (12%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           ++  +++    R    +      Q+  R  R   E     T     +T+    LQ I   
Sbjct: 256 VKPLIEYKKLYRIW-VAHGWSWLQDWVRDGRFRPEFLAGGTVTGRWVTNGGGGLQ-IPKV 313

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R+F      
Sbjct: 314 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRAF------ 367

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   K+  L   Y   +    K  +                     +  A  +  
Sbjct: 368 --SGDRDQAKLAVLGAVYGQTSGDGLKNLAAL----------------RRRFPRAVAYVD 409

Query: 484 WMQENHPEHAIEDLFIGTACER 505
                  E  +   ++G  C  
Sbjct: 410 DAARAGEEGRLVRTWLGRTCPP 431


>gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
 gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
          Length = 551

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 25/183 (13%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
             R         T     IT+    LQ I   +R  V+A  G +LVVAD + +E RVLA 
Sbjct: 283 DGRFRPGFVPGGTVSGRWITNGGGGLQ-IPKVIRRAVVADPGWRLVVADASQLEPRVLAA 341

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +   ++      DLY     ++F           RA+ K+  L   Y   +    K 
Sbjct: 342 ISRDPGLMEVAGNAADLYKAVSDKAF--------SGDRAMAKLAVLGAIYGQTSGDGLKN 393

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
            +                   + +  A  +         E  +   ++G  C        
Sbjct: 394 LAAL----------------RKRFPKAVAYVDDAARAGEEGRLVRTWLGRTCPPSGSQLD 437

Query: 512 QKH 514
              
Sbjct: 438 SAQ 440


>gi|261334251|emb|CBH17245.1| mitochondrial DNA polymerase I protein D,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1629

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISDC---VRSCVIASEGKK--LVVADLAGIEA 386
             S  H EL    T+     +++P+   I  +    +R   ++  G+K   + AD + +E 
Sbjct: 1293 DSCIHHELIHNKTNTGRLASANPNCQNIPKEDKSPLREMFVSRYGEKGMCIEADYSQLEV 1352

Query: 387  RVLAWMAGEQWKLKAFETGEDLYV---------TTYARSFNVAPAQVTKD---QRAIGKV 434
              LA +A +Q  L+   +  D +            Y      A      +    R   K+
Sbjct: 1353 VALAVLANDQQMLEDLRSNVDFHCKRVAMMRPDLQYTEILKKAKKDKEPEFVKLRQQAKI 1412

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  Y  G K   +   +TGL  +   HL++
Sbjct: 1413 FSFQRQYGAGVKMISE---STGLTQDQVRHLIE 1442


>gi|71754987|ref|XP_828408.1| mitochondrial DNA polymerase I protein D [Trypanosoma brucei TREU927]
 gi|21929665|gb|AAM81965.1|AF445379_1 DNA polymerase I-like protein D [Trypanosoma brucei]
 gi|70833794|gb|EAN79296.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            brucei]
          Length = 1629

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISDC---VRSCVIASEGKK--LVVADLAGIEA 386
             S  H EL    T+     +++P+   I  +    +R   ++  G+K   + AD + +E 
Sbjct: 1293 DSCIHHELIHNKTNTGRLASANPNCQNIPKEDKSPLREMFVSRYGEKGMCIEADYSQLEV 1352

Query: 387  RVLAWMAGEQWKLKAFETGEDLYV---------TTYARSFNVAPAQVTKD---QRAIGKV 434
              LA +A +Q  L+   +  D +            Y      A      +    R   K+
Sbjct: 1353 VALAVLANDQQMLEDLRSNVDFHCKRVAMMRPDLQYTEILKKAKKDKEPEFVKLRQQAKI 1412

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  Y  G K   +   +TGL  +   HL++
Sbjct: 1413 FSFQRQYGAGVKMISE---STGLTQDQVRHLIE 1442


>gi|47934654|gb|AAT39765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 41/186 (22%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASR 285
           V +    +++   L  + G   +D+T T   +V    L  N  + P+A  V      + R
Sbjct: 56  VFNPGSRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEYLTLSKR 113

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             +  + + ++A+  DGR+ G +   GA                                
Sbjct: 114 IGM--VRSWLDAVGDDGRIHGRVNTCGA-------------------------------I 140

Query: 346 LPTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 S P+  QI S+ + RSC   ++G KLV  D +G+E R+LA    +         
Sbjct: 141 TGRMTHSSPNMAQIPSESLYRSCFTVADGNKLVGIDASGLELRMLAHYIDDPEYTDLILH 200

Query: 405 GEDLYV 410
           G D++ 
Sbjct: 201 G-DIHT 205


>gi|47934648|gb|AAT39762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934652|gb|AAT39764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934664|gb|AAT39770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 41/186 (22%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASR 285
           V +    +++   L  + G   +D+T T   +V    L  N  + P+A  V      + R
Sbjct: 56  VFNPGSRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEYLTLSKR 113

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             +  + + ++A+  DGR+ G +   GA                                
Sbjct: 114 IGM--VRSWLDAVGDDGRIHGRVNTCGA-------------------------------I 140

Query: 346 LPTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 S P+  QI S+ + RSC   ++G KLV  D +G+E R+LA    +         
Sbjct: 141 TGRMTHSSPNMAQIPSESLYRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDLILH 200

Query: 405 GEDLYV 410
           G D++ 
Sbjct: 201 G-DIHT 205


>gi|157168417|ref|YP_001456774.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
 gi|74268849|emb|CAJ29727.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
          Length = 634

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 89/521 (17%), Positives = 166/521 (31%), Gaps = 101/521 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--LENTDVTIVAH 71
           +D+   G+   + D+  I  ++       E    + DP  P     A  +  T   +V H
Sbjct: 65  VDIEAAGLAHASFDMRCITLSWYTGTGS-EAMTVLIDPRDPHEASFARRILTTAPALVFH 123

Query: 72  NSYFER--TVLKACFNLDIPIHRWICTLVLARSNGLPS--------ALKAVGEALKLSSQ 121
           N  ++    V      LD  +  W  T+VLAR    P         +L    + L +   
Sbjct: 124 NGAYDVPPLVQHGVMTLDHIVKVW-DTIVLAR-MAYPDKDTSKGLESLAGRSDTLGMPP- 180

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLE---- 176
               G    +    G      +      H +   L +      D  +T  +  +L     
Sbjct: 181 --SPGSIKNSYLLAGYKKSDGFM-----HADIDMLPYRIGAMSDTPITLRMLDKLYNNCV 233

Query: 177 -------------PLSSKE-QELWYLDQTINDR-------GYCVDVALAHTLNQIVDVER 215
                        P ++++   L   +Q  N         G  VD    HT ++    ER
Sbjct: 234 QWLTSSTFEGETVPRTAQDAHRLIEREQITNRAMLRRSAIGLRVDREYLHTYSEQTLAER 293

Query: 216 TKLDQELES-LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
                 +E  +    V +      L    +L+T   +      T    L ++K+      
Sbjct: 294 EHAANLIEKTIAREAVGNG-----LHVVNYLDTQGLIPASWPRTPTGRLKADKQAFESLD 348

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                           ++   +  ++D      L +LG  +T   +             R
Sbjct: 349 HPL-------------IDAHRKVADTD----HILDYLG--KTDAMAQ---------ITGR 380

Query: 335 SHEELDQIIT-HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            H ++  +          S P+  Q  S+  R  ++  + +  V  D + +E  ++A  A
Sbjct: 381 VHPQVGILGASATGRMAYSQPELQQFPSEA-RKIILWDKPEGAVSIDWSSVEPVIMANCA 439

Query: 394 GEQWKLKAFE-TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
            +   L  F   G DLY    ++            +R   KV+ LA  Y  G+   + +A
Sbjct: 440 RDTEFLAGFNHHGADLYAPITSQGI----------ERKTAKVVMLAAMYGQGS---RSLA 486

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
              G++++    L K     E     + F + +Q    +H 
Sbjct: 487 ERLGVSVDEAKSLRK--KVFEPMPRTDAFMKAIQATSEQHG 525



 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNASMLYH 649
            Y G       Q  +  +++E +  A   G    I L +HDE+V +    D      +  
Sbjct: 547 AYRG--VNYFCQGSAYSVMSEVINRAYGEGISDGIYLAMHDELVVDASIADR-----IRE 599

Query: 650 LMTSNPSW 657
           LM   P+W
Sbjct: 600 LMQVPPAW 607


>gi|256786957|ref|ZP_05525388.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289770851|ref|ZP_06530229.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289701050|gb|EFD68479.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 493

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 26/202 (12%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           ++  +++    R    +      Q+  R  R   E     T     +T+    LQ I   
Sbjct: 186 VKPLIEYKKLYRIW-VAHGWSWLQDWVRDGRFRPEFLAGGTVTGRWVTNGGGGLQ-IPKV 243

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R+F      
Sbjct: 244 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRAF------ 297

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   K+  L   Y   +    K  +                     +  A  +  
Sbjct: 298 --SGDRDQAKLAVLGAVYGQTSGDGLKNLAAL----------------RRRFPRAVAYVD 339

Query: 484 WMQENHPEHAIEDLFIGTACER 505
                  E  +   ++G  C  
Sbjct: 340 DAARAGEEGRLVRTWLGRTCPP 361


>gi|294630609|ref|ZP_06709169.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292833942|gb|EFF92291.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 566

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 96/322 (29%), Gaps = 60/322 (18%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             Q+  R  R   E     T     +T+    LQ I   +R  V+A  G +LVVAD   +
Sbjct: 270 WLQDWVREGRFRPEFLAGGTVTGRWVTNGGGALQ-IPKVIRRAVVADPGWRLVVADADQM 328

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +   ++      DLY +   R+F           RA  K+  L   Y   
Sbjct: 329 EPRVLAAISRDPGLMEVAGRTSDLYQSVSDRAF--------AGDRAQAKLAVLGAVYGQT 380

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           +    K  +                     +  A  +         E  +   ++G  C 
Sbjct: 381 SGDGLKNLAAL----------------RRRFPRAVAYVDEAARAGEEGRLVRTWLGRTCP 424

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                    +S           A ++     +   A +           D+      LP 
Sbjct: 425 PA-----AANS---------EDATQEA-GLPQDDPAERPGGGSGDRTNGDRGW----LPG 465

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
             S   R  G  R   N   +    ++          ++   RD+ AE           +
Sbjct: 466 YASSDARARG--RFARNFVVQGSAADWALLLLAA---LRRTCRDMAAE-----------L 509

Query: 625 VLTVHDEIVCETPDTDEFNASM 646
           V   HDE++   P  +      
Sbjct: 510 VFFQHDEVIVHCPKEEADTVVE 531


>gi|47934646|gb|AAT39761.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 41/186 (22%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASR 285
           V +    +++   L  + G   +D+T T   +V    L  N  + P+A  V      + R
Sbjct: 56  VFNPGSRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEYLTLSKR 113

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             +  + + ++A+  DGR+ G +   GA                                
Sbjct: 114 IGM--VRSWLDAVGDDGRIHGRVNTCGA-------------------------------I 140

Query: 346 LPTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 S P+  QI S+ + RSC   ++G KLV  D +G+E R+LA    +         
Sbjct: 141 TGRMTHSSPNMAQIPSESLYRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDLILH 200

Query: 405 GEDLYV 410
           G D++ 
Sbjct: 201 G-DIHT 205


>gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5]
 gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5]
          Length = 583

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 127/420 (30%), Gaps = 62/420 (14%)

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL----KAVGEALKLSSQKMEEGKELI 130
           ++  +L   F  D+    +      ++   +P  L           +L   K E GK+L 
Sbjct: 80  YDTLILSRLFFTDLLDRDFR-----SKPANMPGNLYGRHSLEAWGHRLGVHKSEFGKQL- 133

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFG----EYCKGDVTVTREIFKRLEPLSSK----- 181
                                  W  +     EYC  DVTV+ ++ +  EP   +     
Sbjct: 134 --------------------DGDWSTYSPEMLEYCAQDVTVSVQVAQMFEPKLEQYADCI 173

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES---LTYGLVSSSRCL 236
             E  L  +       G+  DV  A  L   +  E   L  ++ S      G   + R  
Sbjct: 174 DTEHRLATIMAWQEREGFPFDVTAAQQLESRLRTELDALSDQMRSTFLFVDGGTFTPRRN 233

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            K + ++       L++   T+   +  + ++      + F +  +             +
Sbjct: 234 NKPQGYIADAPMCKLKEFNPTSRHHIAWAFQQFRNWEPKEFTDSGKPKIDEPTLTAIGTD 293

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
              +  R+    + LG    G+ +        L    R H     + T+        P+ 
Sbjct: 294 EAKAFARILELQKHLGQLAEGKNAWLK-----LESKGRVHHSC-VLNTNTGRQAHMRPNL 347

Query: 357 LQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTY 413
            Q+ S    R+     + +  V AD +G+E R LA      +           D++    
Sbjct: 348 AQVPSASEYRALFGPGDSRVQVGADASGLELRCLAHYLAPFDNGSFAETVVNGDIHTELA 407

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  +           R  GK +   L Y GG       A  +    +     ++     +
Sbjct: 408 S-IYGTD--------RKSGKGVTYCLIYGGGDHKLGSTAGASKAQASKKGKEIRGRIMRD 458


>gi|170781985|ref|YP_001710317.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156553|emb|CAQ01704.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 592

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 58/180 (32%), Gaps = 26/180 (14%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R H E             S    LQ +   +RS V A  G +LVVAD A +E RVLA
Sbjct: 315 RDGRFHPEYVPGGVVTGRWAASGGGALQ-LPRQIRSAVRADPGWRLVVADAAQLEPRVLA 373

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++    A   G DLY         +  A V  D RA  KV  L   Y   +    +
Sbjct: 374 ALSEDRAMADAGR-GTDLYQ-------GLVDAGVV-DTRAHAKVAMLGAMYGATSGESGR 424

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +                       +  A  +            +    +G +      AW
Sbjct: 425 LM----------------PRLVRAYPRATGYVERAARAGESGGVVSTRLGRSSPPPGDAW 468


>gi|156122486|gb|ABU50234.1| DNA polymerase [Cyanophage S-CBP3]
          Length = 582

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 90/497 (18%), Positives = 159/497 (31%), Gaps = 47/497 (9%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQVLKEALENTDVTIVAH 71
           D+   G+     DV  I      D +  E +   D      + + + + LE+ D+  V H
Sbjct: 6   DIETDGLY---NDVTCIHCIGIHDLNTKETYVFNDVGTQQPITKGI-QLLEDADII-VGH 60

Query: 72  NSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           N   ++  V++  +     + R + TLVL+R               K    ++     L 
Sbjct: 61  NIIGYDLPVIRKLYPWFSNVGRVLDTLVLSRLYHADLLKTDQKRNWKHMPVQLWGRHSLE 120

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSK---EQELW 186
           A        E      K    + W    E Y   DV +TR+++K    +      E  + 
Sbjct: 121 AYG--YRLGEYKGCFGKTTDWKDWSQEMEDYMVQDVNITRKLWKDFPEIPEWVQLEHRVA 178

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES---LTYGLVSSSRCLEKLKTWL 243
            +       G+  D   A  L   +  E   L   L +      G   + +         
Sbjct: 179 QILTEQEIHGWYFDEPAAWELESTLRRELESLKAVLRNRHPFILGEEFTPKRP------- 231

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
               G      T T  + +  +++      +Q F +     R+   K       +   G 
Sbjct: 232 NSTQGY-FTGATFTRLKEMNPTSRDHIAYILQKFYDWEPTERTEKGKPVVDEIVLKDIGS 290

Query: 304 LRGTLQFLGASRTGRWS----GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                 F     T +      G     + + R  R H       T+        P+  Q+
Sbjct: 291 EIALQFFRCLELTKQIGMLTEGVNAWLKLV-RNDRIHHHCSVA-TNTHRCAHRKPNLAQV 348

Query: 360 ISDC-VRSCVIASEGKKLVVADLAGIEARVLAW-MAG-EQWKLKAFETGEDLYVTTYARS 416
            ++   R    A+ G  +V ADLAGIE R+LA  +A  +  +        D++     + 
Sbjct: 349 PAEAEFRKLFRATPGMVMVGADLAGIELRMLAHYLAQWDGGRYGDVLLNGDIHQENADKI 408

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                       R + K +  A  Y  G    QK+  +   +L+      K     + + 
Sbjct: 409 ---------GISRRLVKTVTYAFLYGAGN---QKIGLSYDQSLSPDKAKKKGQEIRQAYM 456

Query: 477 DAENFCRWMQENHPEHA 493
           DA    R + E   + A
Sbjct: 457 DAIPGLRKLVEATKKAA 473


>gi|297201366|ref|ZP_06918763.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147869|gb|EFH28770.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 563

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 26/202 (12%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           ++  +++    R    +      Q+  R  R   E     T     +T     LQ I   
Sbjct: 256 VKPLVEYKKLYRIW-VAHGWSWLQDWVRDGRFRPEFLAGGTVTGRWVTHGGGALQ-IPKV 313

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R+F      
Sbjct: 314 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAF------ 367

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                RA  K+  L   Y   +    K  +                     +  A  +  
Sbjct: 368 --SGDRAQAKLAVLGAVYGQTSGDGLKNLAAL----------------RRRFPKAVAYVD 409

Query: 484 WMQENHPEHAIEDLFIGTACER 505
                  E  +   ++G  C  
Sbjct: 410 DAARAGEEGRLVRTWLGRTCPP 431


>gi|184200105|ref|YP_001854312.1| putative DNA polymerase [Kocuria rhizophila DC2201]
 gi|183580335|dbj|BAG28806.1| putative DNA polymerase [Kocuria rhizophila DC2201]
          Length = 588

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 92/293 (31%), Gaps = 44/293 (15%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGY----------CVDVALAHTLNQIVDVERTKLDQEL 222
           +RLE L S E +   +   +  RG             D+       +       +L QE+
Sbjct: 174 QRLERLLSLESQGALVAADMRHRGIPWNPAVHQQILEDMLGTRPAGEERPARMQELAQEV 233

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
            +       +     +L   L    G+ ++    TT    L     +  Q  +    +  
Sbjct: 234 RTALAAPALNPDSPVELLKAL-RNAGVDVD----TTRAFKLQEWTLVNGQPQE----QRV 284

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A+ + VL+   L                 G      W              R H E    
Sbjct: 285 ATVTPVLEYKKLSRV----------FSATGWHWLDTWVHE----------GRFHPEYVVG 324

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                         LQ I   +R  V A  G  LVVAD A +E RVLA +A +    +A 
Sbjct: 325 GVVTGRWAARGGGALQ-IPKYIRDAVRADPGHALVVADAAQLEPRVLAILARDDALAEAS 383

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             G DLY     +      +++T  +R+  K+  L   Y   + A  +     
Sbjct: 384 R-GRDLYTAIAEQG-QARGSELT--ERSHAKLALLGAMYGATSGAGGRFMPQL 432


>gi|196009946|ref|XP_002114838.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
 gi|190582900|gb|EDV22972.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
          Length = 628

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 81/263 (30%), Gaps = 55/263 (20%)

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESL---------------TYGLVSSSRCLEKLKT 241
             +D  L      I + +   L+++   +                 G   S +  ++++T
Sbjct: 307 IRIDTELLRDYQPIFEAKLEALEKKAHQVYCIIFIKRLRQSILQISGYSFSLQSPKQIET 366

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            LF +  L                      +   V   + + S S   ++   +++ + D
Sbjct: 367 ILFEKLKL------------------DQVLKLNLVLKTKKKQSLSTSDEVLNKIKSTSID 408

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G LR   +                 Q +P+       ++            + +     S
Sbjct: 409 GILRLMKK---------------NMQAIPKAMIDFGGIEDT-----KIFGENENETYKGS 448

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG--EDLYVTTYARSFNV 419
              R  +I  +   LV  D   IE R+LA  + +   L+ F      ++Y       FN 
Sbjct: 449 YSPRDMIITKKNYSLVSVDFQAIELRLLAHFSNDSMLLQIFNEHPTINIYTWLATFWFNK 508

Query: 420 APAQVTKDQRAIGKVMELALGYQ 442
               +++ +    K +  ++ Y 
Sbjct: 509 NIDDISQAEFDQAKEICYSILYG 531


>gi|256375220|ref|YP_003098880.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
 gi|255919523|gb|ACU35034.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
          Length = 555

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 100/324 (30%), Gaps = 65/324 (20%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L   + +   G   +      +    F   G+ +        + +        P 
Sbjct: 205 RRLAELADRITAAFGGRAVNPDNPASIVR-AFAREGVDVPSARAWVIKEL------DHP- 256

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A +        +R  V    + ++A  +DGR R     +G   +GRW+        +PR 
Sbjct: 257 AAEPLLAYKELARLWVAHGWSWLDAWVADGRFRPDY-VVGGVVSGRWATRGGAALQIPR- 314

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R+ V A  G +LV AD A +E RVLA +
Sbjct: 315 ------------------------------SLRTAVRADPGWRLVAADAAQLEPRVLAAL 344

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++   +     +DLY T  A SF+          R   K+  L+  Y G +    ++ 
Sbjct: 345 SRDRRLAEV-AGEDDLYTTLAADSFHGD--------RGQAKIAMLSAMYGGTSGGAAELL 395

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +                     + DA  +            +    +G       +AW +
Sbjct: 396 AVL----------------RRRFPDAVGYVERAAREGERGGVVRSRLGRTSPAPSQAWHE 439

Query: 513 KHSRVSELWNELHQAFEQTIENGK 536
                 +  + L ++     E G+
Sbjct: 440 ATGSADDGEDALRRSQRAAREWGR 463


>gi|37626128|gb|AAQ96504.1| hypothetical protein [Vibrio phage VP16T]
          Length = 62

 Score = 77.1 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           M      GY +V+  HDE++ E P+ D  +   +  LMT    W    P++A G++  RY
Sbjct: 1   MKKCENNGYPVVMHTHDELIAEVPE-DFGSVEEMAALMTEREPWRAWWPIRAAGWQDDRY 59

Query: 674 RK 675
           +K
Sbjct: 60  QK 61


>gi|18640489|ref|NP_570330.1| DNA polymerase [Synechococcus phage P60]
 gi|18478719|gb|AAL73268.1| DNA polymerase [Synechococcus phage P60]
          Length = 587

 Score = 77.1 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 82/500 (16%), Positives = 144/500 (28%), Gaps = 96/500 (19%)

Query: 15  DLTKCGICKYAEDVCVI--LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           D+   G+     D+ +I  + A   D      +D   D    +   E L   D     HN
Sbjct: 6   DIETDGLIP---DLTIIHCIVARDIDTDEEFRFDGTGDYPSIKEGLELLSKADEL-WGHN 61

Query: 73  -SYFERTVLKACFNLDIPIHRWICTLVLARS--------------NGLPSAL----KAVG 113
              ++   ++       P      TL+L+R                 +P  L        
Sbjct: 62  IVNYDYPAIQKLHPDWTPPSCTRDTLILSRLFFTDLLDRDFRSRPALMPGNLYGRHSLEA 121

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +L   K E GK L          E  +    P          EYC  DV V+  + K
Sbjct: 122 WGHRLGHHKSEFGKSL----------EGDWSTYSPEM-------LEYCARDVEVSVALAK 164

Query: 174 RLEP-LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              P +   +       E+  +       G+  DV  A  L   + +E   L  ++    
Sbjct: 165 TFVPKIPEYQWSVDTEHEIARIMSWQEQMGFPFDVRAAQALEGKLRLELDTLSDDMRE-- 222

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-----NKKLTPQAIQVFNNRM 281
                         T+ F++ G+     +    +    +      ++  P +        
Sbjct: 223 --------------TFHFVDGGVMTPKRSNK-VRHYFENAPFCKLREFNPTSRHHIAWAF 267

Query: 282 RASRSAVLKLNTL---VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP-------QNLPR 331
              R    K  T     +  +   R   T + L  +R       +            L R
Sbjct: 268 EHHRGWEPKERTAGGQPKIDDEILREINTKESLAFARILELQKHLGQLSEGKNAWLKLER 327

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLA 390
             R H     + T+        P+  Q+ S    RS    S+    V +D +G+E R L 
Sbjct: 328 KGRLHHSC-VLNTNTGRQAHMRPNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLG 386

Query: 391 W-MAGEQW--KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
             ++        +    G D++       +           R  GK +   L Y GG   
Sbjct: 387 HYLSRYDGGKFAEEVVNG-DIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGNHK 436

Query: 448 FQKMASTTGLNLNTFAHLVK 467
               A  +  + +     ++
Sbjct: 437 LGLTAGASKSSASRKGQEIR 456


>gi|282866382|ref|ZP_06275427.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
 gi|282558778|gb|EFB64335.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
          Length = 568

 Score = 77.1 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R   E     T      T+    LQ I   +R  V+A  G +LVVAD   +E RVLA
Sbjct: 283 REGRFRPEYQPGGTVSGRWTTNGGGALQ-IPRVIRQAVVADPGWRLVVADADQMEPRVLA 341

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  ++      DLY     R+F+          R   K+  L   Y   +    K
Sbjct: 342 AISRDRGLMEVAGHEGDLYTALSDRAFHGD--------RDHAKIALLGAVYGQTSGDGLK 393

Query: 451 MASTTGLNLNTFAHLVK 467
             +            V 
Sbjct: 394 NLAALRRRFPHAVAYVD 410


>gi|313892512|ref|ZP_07826101.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119091|gb|EFR42294.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 626

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 76/505 (15%), Positives = 165/505 (32%), Gaps = 49/505 (9%)

Query: 54  PQVLKEALE------NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
           P  +KE ++      N D TI  HN   F+   ++  +  +  I +   T ++  +  + 
Sbjct: 36  PWEIKEGIQRLMHEINNDGTICGHNIISFDIPAIEKLYPKEFHIQKEKHTHII-DTLVMA 94

Query: 107 SALKAVGEALKLSSQKMEEGK-ELIA---RFCKGETHECLYDRNKPNHREAWRLF----G 158
             L +  +   L   + +E    LI        G     L      ++ EAW ++     
Sbjct: 95  RLLNSNIQEQDLIRYRKKELAGNLIGSHSLKAYGHRLGILKGTYAEDNEEAWEVYNEDML 154

Query: 159 EYCKGDVTVTREIFKRLEPLSSK-------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           EY K DV VT  ++K  +            E +  +L   + + G+  D+  A  L + +
Sbjct: 155 EYNKQDVRVTYALYKSFQDRIKGMEQAILLEHKAQWLMTKMEENGFPFDIPDALKLVKTL 214

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL------EDLTETTCQRVLSS 265
                ++D ++ ++   +       ++    L  + G+ +         +    + +  +
Sbjct: 215 RQRAEEIDTQISAVVPKIPDKVFTPKRDNKRLGYKKGVPIQRYKPFNPNSRQQIEWIFRT 274

Query: 266 NKKLTPQAIQVF--NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA--SRTGRWS- 320
           +   TP    ++    R++   S    +    +A     ++    +       R G+ + 
Sbjct: 275 HYNYTPDKADLYTEEGRLKIDESTFEYIEKDEKAPQGAKKIAPLFEERLMLCKRLGQLAD 334

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGK 374
           G     +++    + H  ++   T    +  S+P+  Q+        +  R      +G 
Sbjct: 335 GKQAWLKHVKSDGKIHGRVNPNGTVTGRATHSNPNVAQVPHVGTPYGEECRKLFNVPQGW 394

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
                D  G+E R LA        L  ++ G+  +   +               R + K 
Sbjct: 395 TQAGIDACGLELRCLAHY------LSPYDKGKYAHEVVHGDIHTSNQKAAGLATRNLAKT 448

Query: 435 MELALGYQGGAKAFQKM--ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
              A  Y  G     ++                  T S     ED E      +  + + 
Sbjct: 449 FIYAFLYGAGDLMIGELVGGKEKEGKAIKKKFFKATPSIKLLKEDIEKALIKTRIYNRKI 508

Query: 493 AIEDLFIGTACERVKKAWRQKHSRV 517
             +  ++    +  K   R  HS +
Sbjct: 509 QWKRKYL-RGLDGRKLYVRSIHSAL 532


>gi|256824902|ref|YP_003148862.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
 gi|256688295|gb|ACV06097.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
          Length = 587

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 97/390 (24%), Gaps = 75/390 (19%)

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
           +T   L+D   P       L     +           RL  L   E     + Q +N  G
Sbjct: 131 DTEVALFDVAAPGPDLEACLAEHRAQQACLAEARDGGRLALLCHAESVGGLIAQELNHAG 190

Query: 197 YCVDV-----ALAHTLNQIVD-----VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
              D       L   L +             L   +         +      L   L   
Sbjct: 191 VPFDASVHHAQLTTALGEADRHGGRPARMAALVARIRETLDAPGLNPDSAPTLVAAL-RR 249

Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            GL +    +          + L    I+        +R       + +     DGR R 
Sbjct: 250 AGLEVTSTRK-------WELRGLDHPVIEPLLEYKALARLYTANGWSWMRHWVRDGRFR- 301

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                                          +            +     LQ +   +RS
Sbjct: 302 ------------------------------PDWVAGGVVTGRWASRGGGALQ-LPQQIRS 330

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            V A  G +LVVAD A +E RVLA M+ +    +A   G DLY         +    V  
Sbjct: 331 AVRAEPGWRLVVADAAQLEPRVLAAMSQDGAMARAAAAG-DLYQ-------GLVDEGVV- 381

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           D RA  KV  L   Y   +     + +                     +  A  +     
Sbjct: 382 DTRAHAKVAMLGAMYGATSGEAGALMARL----------------RRAYPRAMGWVDAAA 425

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                      ++G         WR+  + 
Sbjct: 426 AAGERGERVSTWLGRTSPAPPAFWREAQAA 455


>gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42]
          Length = 588

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 77/506 (15%), Positives = 141/506 (27%), Gaps = 129/506 (25%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN-- 72
           D+   G+ +    +   + A   D + V  +D   D    +     L++ D     HN  
Sbjct: 6   DIETDGLLRNLTKIHC-IVAQDLDTNEVYKFDGTGDHPSIREGLALLKDADEL-WGHNII 63

Query: 73  ------------------SYFERTVLKACFNLDIPIHRWIC--TLVLARSNGLPSALKAV 112
                             + ++  +L   F  D+    +      + A+  G   +L+A 
Sbjct: 64  GYDFEAIKEVFPRWNYSSTVYDTLILSRLFFTDLLDRDFRSRPANMPAQLYGR-HSLEAW 122

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G   +LS  K E GK L   +                         +YC  DV V+  + 
Sbjct: 123 G--HRLSVHKSEFGKSLSGDWSTYSPE-----------------MLDYCARDVVVSVSLA 163

Query: 173 KRLEPLSSK-------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES- 224
           +      ++       E  L  +       G+  DVA A  L   +  E  KL +++   
Sbjct: 164 RLFTAKVAEYRDCISTEHRLATIMAWQESEGFPFDVAKAERLEGQLRSELLKLSEQMRET 223

Query: 225 -------------------------LTYGLVSSSRCLEKLKTWLFLET-GLHLEDLTETT 258
                                    +      +    + +  W F        ++LT+T 
Sbjct: 224 FPYVDGGSFTPRTNNGPRGYVKGAAMCRLKEFNPTSRQHI-AWAFATFRDWEPKELTDTG 282

Query: 259 CQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
             +     +L           ++   +    + +    N  ++ + SDGR+         
Sbjct: 283 KPKIDETTLLEYGTDEAKTFARILELQKHLGQLS-EGANAWLKKVESDGRIHH------- 334

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASE 372
                   CV                    T+        P+  Q+ S    R       
Sbjct: 335 -------SCVLN------------------TNTGRQAHMKPNLAQVPSGHEYRELFHPGA 369

Query: 373 GKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +  V AD +G+E R L       +  K        D++       +           R 
Sbjct: 370 NRSQVGADASGLELRCLGHYLARFDGGKFAKEVVQGDIHTALA-EIYGTD--------RK 420

Query: 431 IGKVMELALGYQGGAKAFQKMASTTG 456
            GK +   L Y GG       A  + 
Sbjct: 421 SGKGVTYCLIYGGGDSKLGLTAGASK 446


>gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG]
          Length = 401

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 42/246 (17%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++  +L    G   +  T T      +  L     +  +A  + +  +   R
Sbjct: 170 EFNLGSRKQIGEYLMD-FGWEPKRFTPTGQPIVDEGTLKKITHIH-EAKPIADFLLYQKR 227

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
            A  ++ + ++A+  DGR+ G++   G + TGR S                         
Sbjct: 228 IA--QIQSWLDALEEDGRVHGSVIPNG-TITGRMSHNHPNV------------------- 265

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                   P          R+C    EG  LV  D +G+E R+LA    ++  +     G
Sbjct: 266 -----AQVPAVYSPFGVECRACWTVEEGNVLVGVDASGLELRMLAHYMNDEEYINEVVNG 320

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T  +   +       + R   K    AL Y  G +    +   +        + 
Sbjct: 321 -DIHT-TNQKLAGL-------ESRDTAKTFIYALVYGAGDEKIGSVVGGSRKQGKELKNR 371

Query: 466 VKTNSA 471
             TN  
Sbjct: 372 SLTNLP 377


>gi|152968215|ref|YP_001363999.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
 gi|151362732|gb|ABS05735.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
          Length = 592

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 79/274 (28%), Gaps = 57/274 (20%)

Query: 191 TINDRGYCVDVALAHTLN---------QIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            ++  G  VD A+A  +             +  R++  ++     +      R   ++  
Sbjct: 226 ELSRTGLPVDRAVAERIVADAVGPRPGDAGEEARSRAVRDAPVHEHLGRVDLRNPAQVLA 285

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            L    G  + D    T    L   ++  P    +   R     +       L E + +D
Sbjct: 286 AL-RGLGFDVPD----TRAWRLERLREAHPGVAALLAWRKAERLATTYGYRWLDEHVGAD 340

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GRLRG                               E                  L  + 
Sbjct: 341 GRLRG-------------------------------EWSGADAAAGRMTAQA--GLHNLP 367

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R  V A  G  LV ADL  +E RVLA ++G+   + A     DLY    A       
Sbjct: 368 SELRPAVAAEPGHVLVRADLGQVEPRVLAAVSGDAGLVAATRDD-DLYAPVAAAL----- 421

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                  R   KV  LA  Y   + A  +     
Sbjct: 422 ----GVDRPTAKVAVLAAMYGQTSGAAGEALRRM 451


>gi|290958457|ref|YP_003489639.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260647983|emb|CBG71088.1| putative DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 571

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 96/342 (28%), Gaps = 72/342 (21%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           ++  L++    R    +      Q+  R  R   E     T     +T+    LQ I   
Sbjct: 256 VKPLLEYKKLYRIW-VAHGWSWLQDWVRDGRFRPEFLAHGTVTGRWVTNGGGALQ-IPKV 313

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G +LVVAD   +E RVLA ++ +   +       DLY     R+F      
Sbjct: 314 IRRACVADPGWRLVVADADQMEPRVLAAISRDPGLMDVAGRPGDLYQAVSDRAF------ 367

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   K+  L   Y   +    K  +                     +  A  +  
Sbjct: 368 --SGDREQAKLAVLGAVYGQTSGDGLKNLAAL----------------RRRFPHAVRYVD 409

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                  E  +   ++G  C                          Q  +   A    + 
Sbjct: 410 DAARAGEEGRLVRTWLGRTCPPAAGDPDAAGE---------EAGIPQADDGPGAPEQGRG 460

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN-IV 602
           +     ++                           Y +T +R         G+   N +V
Sbjct: 461 QGQETEWVP-------------------------GYASTDSRA-------RGRFARNFVV 488

Query: 603 QAVSRD----ILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           Q  + D    +LA           ++V   HDE++   P  +
Sbjct: 489 QGSAADWTLLLLAALRRTLDGMAAELVFFQHDEVIVHCPAAE 530


>gi|320010013|gb|ADW04863.1| DNA-directed DNA polymerase [Streptomyces flavogriseus ATCC 33331]
          Length = 568

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             Q+  R  R         T      T+    LQ I   +R  V+A EG +LVVAD   +
Sbjct: 277 WLQDWVRDGRFRPGYQPGGTVSGRWTTNGGGALQ-IPKVIRRAVVADEGWRLVVADADQM 335

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ ++  ++      DLY     R+F+          R   K+  L   Y   
Sbjct: 336 EPRVLAAISRDRGLMEVAGHEGDLYKALSDRAFHGD--------RDHAKIALLGAVYGQT 387

Query: 445 AKAFQKMASTTGLNLNTFAHLVK 467
           +    K  +            V 
Sbjct: 388 SGDGLKNLAALRRRFPQAVAYVD 410


>gi|238899051|ref|YP_002924733.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466811|gb|ACQ68585.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 130

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           +  ++  + G  L    +     VL  +  L     ++   R +  +++  K   L   +
Sbjct: 1   MMDYISHDLGYPLMQFDKAILGEVLKDD-TLPDTDRRLIEIRQQLGKTSTAKYAALKALV 59

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            +D R  G L + GAS TGRWSG  F PQNLPRPS  + ++
Sbjct: 60  MNDHRAHGLLMYHGAS-TGRWSGRHFQPQNLPRPSFKNTDV 99


>gi|32442299|gb|AAP82220.1| DNA polymerase [Podovirus GOM]
          Length = 396

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 107/315 (33%), Gaps = 50/315 (15%)

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             + V RE+ K   PL   ++E+              D +L+    + +    T +    
Sbjct: 108 RSMEVEREVHKTFTPLPVFDKEVTPKYNK--------DGSLSVVGLKFLGDRYTDVAGPF 159

Query: 223 ESLTYGLVSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
             +++    +    +++   L     +  L  E       + VLS      P+A  +   
Sbjct: 160 SRVSFP-EFNLGSRQQIARHLQFFGWKPKLFTEKGQAIVDEGVLSRVD--IPEAKLIAEY 216

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            +   R+A  ++ + +EA+  DGR+ G +  +GA  TGR +        +P         
Sbjct: 217 LLIQKRTA--QVQSWIEAVEEDGRVHGRVNPIGAV-TGRMTHSSPNMAQVP--------- 264

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                      +  P   +      R C    +G +LV  D AG+E R+LA    ++   
Sbjct: 265 ----------ASYSPYGTEC-----RECWTVPKGYRLVGIDAAGLELRMLAHYMNDEEYT 309

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                G D++  T  ++  +A        R + K    A  Y  G      +   +  + 
Sbjct: 310 NEVTNG-DVHT-TNQKNAGLAT-------RDLAKTFIYAFLYGAGDAKIGAIVGGSRRDG 360

Query: 460 NTFAHLVKTNSAPEE 474
                    N+ P  
Sbjct: 361 AELKEKFLNNTPPLR 375


>gi|108757261|ref|YP_629462.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
 gi|108461141|gb|ABF86326.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
          Length = 669

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 102/680 (15%), Positives = 187/680 (27%), Gaps = 147/680 (21%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVL 99
            +      Q  +EA+  +D  +V  N  ++  V+ A            +   R  C  + 
Sbjct: 37  LLDKAQARQFFREAIAASDTRLVGANLAYDLGVMAADDPSLVAPIFAALEAGRLHCVQIR 96

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                +   L  V  +        E  +  +A     + +  L       + +AWRL   
Sbjct: 97  EALIDIARGLYGVDPSTGRKLDDDEGARYPLALL--VQRYLGLDISEDKKNPKAWRL--R 152

Query: 160 YCKGD-VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           Y + D V V R          ++       D       Y +DV                L
Sbjct: 153 YAELDGVPVER--------WPTEAAAYPKRDAR-----YTLDVFFRQEAVARETPNGGNL 199

Query: 219 DQELESL----------TYGLVSSSRCLEKLKT-----WL-----FLETGLHLEDLTETT 258
             E E +           +GL ++   +  L+      W      F   G++  D T+ +
Sbjct: 200 HAEAEQMRAAFALHLASIWGLRTNGDSVAVLRERVEREWGENRAKFQAAGIYRADGTKDS 259

Query: 259 C---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                 V ++     P              +    L    +A+  D    G +    ++ 
Sbjct: 260 KRLAALVTAAYDGQPPITAPSDRFPDGQVATDRDTLLGSGDALLEDLGKSGRVDKYKSTY 319

Query: 316 TGRW-SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
                +G   P    PR        + +++     ++SD   L      +R    A  G 
Sbjct: 320 LDVVEAGTSLP--INPR-------FNVLVSTTR--VSSDYQQLPQKGG-IREVHEARPGF 367

Query: 375 KLVVADLAGIEARVLA----WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-- 428
                D  G+E R +A    W  G     +A  +G D++    A     +  ++      
Sbjct: 368 AYCSVDYGGLELRTMAQRAIWELGYSKMAEALNSGLDVHTLAAAEFLGASYDELLPKVKA 427

Query: 429 --------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                   R + K++    G      +    A     +  +F  L K             
Sbjct: 428 KDPLAVAFRQLAKILNFGKGGGMTGGSLVYNARA--KDRVSFCLLAKRADVCGI------ 479

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                          +  + T   + K   R       E+  EL   +       + +  
Sbjct: 480 ---------------ERIVITVQRKPKMVCRA----CVEVAKELDTKWLNAWPEQRELQQ 520

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
           R +                +M+P    L        R     T            ++   
Sbjct: 521 RAKSST------YGGGFADVMIPGANIL--------RGGCGYT------------QILNT 554

Query: 601 IVQAVSRDILAEGMMNATKA----------GYDIVLTVHDEIVCETP--------DTDEF 642
             Q +        M   ++           G  +VL VHDE++ E P        D  E 
Sbjct: 555 PFQGLGAVGCKLAMWRVSREMYVDRRSPLYGSRLVLMVHDELISELPANSAQRMHDAAER 614

Query: 643 NASMLYHLM-TSNPSWAKGL 661
            A ++   M  + P  A  +
Sbjct: 615 KAYLMREAMKETTPDLAPAI 634


>gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 570

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 107/349 (30%), Gaps = 58/349 (16%)

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
           H  L++ ++P  RE         + D         RL  L + E     +   +   G  
Sbjct: 128 HTALFELDQPTPREPPSAAEFAAQQDAVAASANPGRLRLLLAAESVGALIAAEMRFAGLP 187

Query: 199 VDVALAHTLNQIVD---------VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
                   L   +          V    L  ++ +       +      L   L    GL
Sbjct: 188 YSAERHDALLTDLLGPRPAYGGPVVLEDLAAQIRAALDSPDLNPDSPPALLRAL-QRAGL 246

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            +   +           ++L    I+   +  + +R       + +E+   DGR R    
Sbjct: 247 RVSSTSS-------WELRELDHPVIEPLLHYKKLARLLTANGWSWLESWVQDGRFRPDYV 299

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             G   TGRW+        LP+                                +R  V+
Sbjct: 300 PGGVV-TGRWATRGGSALQLPK-------------------------------QLRGAVV 327

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A  G KLVVAD A +E R+L  +A +Q    A   G+DLY         V+   VT  +R
Sbjct: 328 ADPGWKLVVADAAQLEPRILTGLAQDQRMAAAGR-GQDLYTGI------VSAGAVT--ER 378

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           A  KV  L   Y        ++             LV+  +   E  +A
Sbjct: 379 AQAKVAMLGAMYGATTGESGRLMPRLARAFPRAVRLVEEAARAGERGEA 427


>gi|207110463|ref|ZP_03244625.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 103

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGI 384
           +  + H    Q  T      +  P+   I         +R   IAS +   L+  D + I
Sbjct: 7   KDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQI 66

Query: 385 EARVLAWMAGEQWKLK 400
           E R+LA  + ++  ++
Sbjct: 67  ELRLLAHFSQDKDLME 82


>gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 116/360 (32%), Gaps = 46/360 (12%)

Query: 149 NHREAWRLF----GEYCKGDVTVTREIFKRLEPLSSK--------EQELWYLDQTINDRG 196
           ++   W  F      YC+ DV + +++++RLE             E ++  +       G
Sbjct: 32  DYEGGWETFNPEMLAYCQQDVRLLKDLYRRLEVQLEDFDEASIELEHKVAEIIYRQEQTG 91

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL------------F 244
              D    + L   +  +  ++  E+  +   L    + L+ LK  L             
Sbjct: 92  VLFDERKGYELLAELKEKVHEIVLEVREVFKPLPV-WKSLQVLKNPLKKDGNPSVAYQKQ 150

Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV-EAMNSDGR 303
           L+ G H +   +   +     N     Q  +   +   +      K + +V E + +D  
Sbjct: 151 LDRGAHYDSDGDWGYKDYPEFNLGSRQQVSRYLQHFGWSPTEWTDKGSVIVNEKVLADVD 210

Query: 304 L---RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           +   +  +++   S+  R +      + +    R H  ++           S P+  Q+ 
Sbjct: 211 IPEAKMIMEYFTISK--RVAMVKAWLEAVGDDGRIHGRVNSCGAVTGRMTHSKPNLAQVP 268

Query: 361 ------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                  +  R   I  EGK LV  D +G+E R+LA    ++        G D++  T  
Sbjct: 269 AIYSPYGEECRELWIVPEGKCLVGIDASGLELRMLAHYMNDKDYTDEILNG-DIH--TAN 325

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           +             R   K    A  Y GG     ++      +          N+    
Sbjct: 326 QL------AAGLQSRDQAKTFIYAFLYGGGDGKIGEIVGGKAKDGQRLKAKFLDNTPALR 379


>gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 562

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 26/203 (12%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +   L++    R    +      Q+  R  R   E     T      T+    LQ I   
Sbjct: 261 VEPLLRYKKLYRLH-TAHGWAWLQSWVRDGRFRPEYLPGGTVSGRWTTNGGGALQ-IPKV 318

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           VR  V+A  G +LVVAD   +E RVLA ++ +   ++   +G DLY T   R+F      
Sbjct: 319 VRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGSGRDLYATLSDRAF------ 372

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
               +R + K+  L   Y   +    K  +                     +  A  +  
Sbjct: 373 --SGRRELAKLALLGAVYGQTSGDGLKHLAAL----------------RRRFPAAVAYVD 414

Query: 484 WMQENHPEHAIEDLFIGTACERV 506
                  E  +   ++G  C  V
Sbjct: 415 EAARAGEEGRLVRTWLGRTCPPV 437



 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 28/215 (13%)

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
           S  + +    +     +    + A+     G       K       R       + +A  
Sbjct: 359 SGRDLYATLSDRAFSGRRELAKLALLGAVYGQTSGDGLKHLAALRRRFPAAVAYVDEAA- 417

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +  E G+ +     R  P V    ++      LP              SY +T + +   
Sbjct: 418 RAGEEGRLVRTWLGRTCPPVGGGAEEPADEAGLP--------REQEEPSYGSTASARAR- 468

Query: 590 EYTYGGKLTEN-IVQAVSRD--ILAEGMMNATKAGY----DIVLTVHDEIVCETPDTDEF 642
                G+ T N +VQ  + D  +L    +  +  G     +IV   HDE++   P  +  
Sbjct: 469 -----GRFTRNFVVQGSAADWALLMLAALRRSLTGAGLRAEIVFFQHDEVIVHCPQEEAD 523

Query: 643 NASMLYHLMTSN---PSWAKG---LPLKAEGYESK 671
                           ++       PL     E  
Sbjct: 524 TVREAIAEAGETAGRIAFGPTPVRFPLTMAAVECY 558


>gi|47934720|gb|AAT39798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLTFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V    M   R  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVARYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|320156437|ref|YP_004188816.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
 gi|319931749|gb|ADV86613.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
          Length = 684

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 138/463 (29%), Gaps = 120/463 (25%)

Query: 70  AHNS-YFERTVLKACFNLDIPIHRWICTLVLAR-----------SNGLPSALKAVGEALK 117
            HN   ++  V+K    +++P  +   TLV AR            N     L  +  +  
Sbjct: 65  GHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIKDIDQRNSGKYTLGKLFGSHS 124

Query: 118 LSSQKMEEGKELIARFCKG-ETHECLYDRN-KPNHREA---WR------LFGEYCKGDVT 166
           L +  +  G  L   +    +  + +YD   KP   +    W+      + G+YC  DV 
Sbjct: 125 LEAWGIRLGGNLKMEYAPVIDPDQPVYDPTVKPKDAKKDPRWKGSIFTPMMGDYCMQDVR 184

Query: 167 VTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           V  ++F RLE  +++         E +  ++       G+  D   A  L   +   R  
Sbjct: 185 VNVDLFHRLERKAAELNYARSLKLEHDAAWVLAQQERNGFKFDEEKAIKLLGRLAGRREF 244

Query: 218 LDQELESLTYG-----------------------------------LVSSSRCLEKLKTW 242
           L  EL     G                                   +  +      +   
Sbjct: 245 LYGELIRTFGGWWVSEGVVVPERTVNYKNPLTASRTQGAPFTKVKWVDFNPSSRRHIIKV 304

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKL--NTLVEAM 298
           L    G   E+ T +   +V  +  K    P+A  +    +   R   L       +  +
Sbjct: 305 LTDR-GWTPEEFTPSGEAKVDETILKDLKFPEAKLMAEWFLVQKRLGQLADGNQAWLNTV 363

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           + DG +RG++   GA                                   +  S P+  Q
Sbjct: 364 HPDGFIRGSVNPNGA-------------------------------VTGRATHSFPNVAQ 392

Query: 359 IIS------DCVRSCVIASEGKKLVVADLAGIEARVLAWMA---GEQWKLKAFETGEDLY 409
           + S         R      EG  L+ +D +G+E R LA       +   +     G D++
Sbjct: 393 VPSCGAEYGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDDGKYIDVVLNG-DIH 451

Query: 410 VTTYARS-------FNVAPAQVTKDQRAIGKVMELALGYQGGA 445
                 +              + ++ R   K    A  Y  GA
Sbjct: 452 WANAQAAGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGA 494


>gi|111223189|ref|YP_713983.1| putative DNA polymerase I [Frankia alni ACN14a]
 gi|111150721|emb|CAJ62422.1| putative DNA polymerase I [Frankia alni ACN14a]
          Length = 669

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 102/395 (25%), Gaps = 119/395 (30%)

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
           G+ + D    T    L   +   P    +   R     +       L   +  DGRLRG 
Sbjct: 344 GVDVPD----TRSGRLEPLRDAHPAVAALLAWRRTERIATTYGHRWLDTHVGPDGRLRGA 399

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 +     +       NLP                                 +R  
Sbjct: 400 WHGSDGAAGRMTAQAG--LHNLPAD-------------------------------LRCA 426

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           V+A  G+  V ADL  IE RVLA ++ +     A +   D+Y    A+            
Sbjct: 427 VVAEPGRVFVRADLGQIEPRVLAVVSADPALAAATQAD-DMYAPVAAQL---------GR 476

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            RA  KV  LA  Y     A                              A    R M+ 
Sbjct: 477 DRAHAKVAMLAAMYGQTTGA------------------------------AGEALRRMRR 506

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            +P           A  R  +  R    R+  L      A      +  A   R   D  
Sbjct: 507 AYPTALAYLD-AADAAGRSGRDLRTYGGRLVRL------APAAGPPDRAAGPPRGLTD-- 557

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN-IVQAVS 606
                                           +   T Q        G+   N ++Q  +
Sbjct: 558 ----------------------PAPPDEASPAVGGVTEQAR------GRFARNAVIQGPA 589

Query: 607 RDILAEGMMNAT----KAGYDIVLTVHDEIVCETP 637
            ++     +         G +IVL +HDE++   P
Sbjct: 590 AELFKAWAVTVRAELPALGGEIVLCLHDELLLHVP 624


>gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
 gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 513

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 76/262 (29%), Gaps = 64/262 (24%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F   G+ L    +   + V        P    +  +R  +   +       +++   D R
Sbjct: 208 FRREGIELASTRKHLLREV------DHPAVPLLLRHRDLSKLFSTNGW-QWLDSWVRDDR 260

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G   +GRW+                                 P PL      
Sbjct: 261 FRPVYVPGGVV-SGRWASR------------------------GGGALQIPKPL------ 289

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            RS VIA  G   V+AD   +E R+LA M+G+   + A    +DLY    A +F+     
Sbjct: 290 -RSSVIADPGHTFVIADAGQLEPRILAAMSGDARMVAA-AGADDLYAPVAAETFDGD--- 344

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   KV  L + Y   A   + +                       +  A  +  
Sbjct: 345 -----RGKAKVAILGVLYGATAGEARSL----------------LTLLRTRFPVAVEYVE 383

Query: 484 WMQENHPEHAIEDLFIGTACER 505
                     +   ++G AC  
Sbjct: 384 RAARAGERGEVVHSWLGRACPP 405


>gi|47934650|gb|AAT39763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 41/186 (22%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASR 285
           V +    +++   L  +  +  +D+T T   +V    L  N  + P+A  V      + R
Sbjct: 56  VFNPGSRQQVADRLTAKDAV-WKDITPTGKPKVDEKSLEQNANI-PEAALVLEYLTLSKR 113

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             +  + + ++A+  DGR+ G +   GA                                
Sbjct: 114 IGM--VRSWLDAVGDDGRIHGRVNTCGA-------------------------------I 140

Query: 346 LPTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 S P+  QI S+ + RSC   ++G KLV  D +G+E R+LA    +         
Sbjct: 141 TGRMTHSSPNMAQIPSESLYRSCFTVADGNKLVGIDASGLELRMLAHYMDDPEYTDLILH 200

Query: 405 GEDLYV 410
           G D++ 
Sbjct: 201 G-DIHT 205


>gi|239980380|ref|ZP_04702904.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291452241|ref|ZP_06591631.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291355190|gb|EFE82092.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 562

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 25/175 (14%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R         T      T+    LQ I   +R  V+A  G +LVVAD   +E R+LA
Sbjct: 284 RDGRFRPSYLPGGTVSGRWATNGGGALQ-IPKVIRRAVVADPGWRLVVADADQLEPRILA 342

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G++  ++     +DLY     R+F        +  R + K+  L   Y   +    K
Sbjct: 343 AVSGDRALMEVASRPDDLYQAVSDRAF--------QGDRDLAKLAVLGAVYGQTSGDGLK 394

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             +                     +  A +          E  +   ++G  C  
Sbjct: 395 NLAAL----------------RRRFPAAVDHVDEAARAGEEGRLVRTWLGRTCPP 433


>gi|32442303|gb|AAP82222.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 104/342 (30%), Gaps = 56/342 (16%)

Query: 141 CLYDRNKPNHREA-WRLFG----EYCKGDVTVTREIFKR-LEPLSSK-----EQELWYLD 189
            L   N  +  +  W  +     +YC+ D      ++K+ +    S      E E   + 
Sbjct: 41  GLRLSNLKDDYDGGWDTWSKDMQDYCEQDCQANWTLYKKIMSKRPSADSVRLEHEFAAVI 100

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW-LFLETG 248
           +     G+  D   A+ L   +   + +L+ +L++                 W +     
Sbjct: 101 RKQERIGFNFDTNKANQLLAKLQGRQAELEAKLQT-----AFPP--------WEIKTPFT 147

Query: 249 LHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
             + + +    + VL+   K     P +     +R++  R    +L T       D  + 
Sbjct: 148 PKVNNKSRGYVKGVLTYKVKEIVFNPASRDHIADRLQKLRCWKPELMTDQGKPKVDEAVL 207

Query: 306 GTLQFLGASRTGR-----------WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            TL +  AS                +G     + + +  + H  ++           S P
Sbjct: 208 KTLDYPEASILNEDLLINKRIGILATGVNGWLKMV-KGGKIHGRVNTNGAATGRCTHSKP 266

Query: 355 DPLQIIS------DCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGE 406
           +  Q  S         R    A EG  LV ADL+G+E R LA      +           
Sbjct: 267 NVAQTPSVGAAYGRECRELFHAPEGYSLVGADLSGLELRCLAHYMARFDSGSYADVVVNG 326

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           D++     +S  +         R   K       Y  G    
Sbjct: 327 DIHTLN-QKSAGLPT-------RNNAKTFIYGFLYGAGPAKI 360


>gi|254386231|ref|ZP_05001542.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194345087|gb|EDX26053.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 413

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 91/297 (30%), Gaps = 49/297 (16%)

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
            D  R  L + L     G     R L +L   +    G           +RV        
Sbjct: 27  ADTHRALLTELLGERYAG-GGQPRRLAELADRISDAFG-----------RRVRPDLPADV 74

Query: 271 PQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
            +A      +++++R   ++   +  VE +    +L       G S    W         
Sbjct: 75  IKAFAEAGIKLKSTRRWEIQEIDHPAVEPLVEFKKLYRIYTAHGWSWLADWVHD------ 128

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
                R   E     T     +T+    LQ I   +R  V+A  G +LVVAD   +E RV
Sbjct: 129 ----GRFRPEFIPGGTFTGRWVTNGGGALQ-IPKVIRRAVVADPGWRLVVADADQMEPRV 183

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ +   ++     EDLY     + F           R + K+  L   Y   +   
Sbjct: 184 LAAISRDPAFMEVAGRPEDLYTAISRQGF--------AGDRDMAKLAVLGAVYGQTSGDG 235

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            K  +                     +  A  +     +   E  +   ++G  C  
Sbjct: 236 LKNLAAL----------------RRRFPRAVAYVDEAAKAGEEGRLVRTWLGRTCPP 276


>gi|47934724|gb|AAT39800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDVPYAEQLMMDLMFEMNSIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V    M   R  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVARYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|182437857|ref|YP_001825576.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466373|dbj|BAG20893.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 558

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             Q+  R  R   E     T      T+    LQ I   +R  V+A  G +LVVAD   +
Sbjct: 277 WLQDWVREGRFRPEYQPGGTVSGRWTTNGGGALQ-IPKVIRQAVVADPGWRLVVADADQM 335

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ ++  ++      DLY     R+F           R   K+  L   Y   
Sbjct: 336 EPRVLAAISRDRGLMEVAGHDGDLYKALSDRAF--------SGDREHAKLAMLGAIYGQT 387

Query: 445 AKAFQKMASTTGLNLNTFAHLVK 467
           +    K  +            V 
Sbjct: 388 SGDGLKNLAALRRRFPLAVAYVD 410


>gi|227489383|ref|ZP_03919699.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090561|gb|EEI25873.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 60

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 31/45 (68%)

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           R  TYGGKL ENIVQAV+RD+L   M    +AG+ IV+ V DE V
Sbjct: 4   RLETYGGKLVENIVQAVARDLLVRAMTLVAQAGHKIVMHVRDEPV 48


>gi|302559315|ref|ZP_07311657.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302476933|gb|EFL40026.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 563

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 59/181 (32%), Gaps = 25/181 (13%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             Q+  R  R   E     T     +T+    LQ I   +R   +A  G +LVVAD   +
Sbjct: 276 WLQDWVRDGRFRPEFLAGGTVTGRWVTNGGGALQ-IPKVIRRAAVADPGWRLVVADADQM 334

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +   ++      DLY +   R+F           RA  K+  L   Y   
Sbjct: 335 EPRVLAAISRDPGLMEVAGRESDLYQSVSDRAF--------SGDRAQAKLAVLGAVYGQT 386

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           +    K  +                     +  A  +         E  +   ++G  C 
Sbjct: 387 SGDGLKNLAAL----------------RRRFPRAVAYVDDAARAGEEGRLVRTWLGRTCP 430

Query: 505 R 505
            
Sbjct: 431 P 431


>gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 566

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 125/442 (28%), Gaps = 128/442 (28%)

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           L  ++ +   G   +      +   L  E G+ +    +   Q +        P    + 
Sbjct: 210 LAAKISAALGGRPVNPDSSASVVRALARE-GIEVPAARKYLLQDI------DHPAVAPLL 262

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             +   SR         ++   +DGR R     +G   +GRW+        +PR      
Sbjct: 263 EYK-ELSRLHSANGWAWLDEWVTDGRFRPHY-VVGGVVSGRWATRGGGALQIPR------ 314

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +RSC  A  G KLVVAD A +E RVL  ++G++ 
Sbjct: 315 -------------------------ALRSCASADPGWKLVVADGAQLEPRVLTALSGDRR 349

Query: 398 KLKAFETGEDLYVTTYARSFN------VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
             +      DLY       F+      + P   T+D R+  K+  L+  Y G +     +
Sbjct: 350 LAEV-AAATDLYARLAEALFSGTRYVPLRPGD-TRDDRSRAKIAMLSAMYGGTSGEAGPL 407

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
            +                   + + DA ++                 +G        AWR
Sbjct: 408 LALL----------------RQRFPDAVSYVERAAAAGERGERVRSRLGRTSPAPSAAWR 451

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                          A    +   +A   R RR                           
Sbjct: 452 ---------------ALTGGLTEDEATETRARR--------------------------- 469

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEGMMNATKAG---YDIVLT 627
                       +R   R        T N +VQA + D+ A  +            +V  
Sbjct: 470 -----------ASRSWGR-------FTRNFVVQASAADLTAVLLATLRGRLPDPAHLVFF 511

Query: 628 VHDEIVCETPDTDEFNASMLYH 649
           +HDE++   P       + +  
Sbjct: 512 LHDEVIVHAPAELADEVAEIVE 533


>gi|167393523|ref|XP_001740613.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165895221|gb|EDR22960.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 226

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 61/177 (34%), Gaps = 10/177 (5%)

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA    +   ++ F++  D++    A         +T  +R   K +     Y  G 
Sbjct: 3   LRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCIYGIGP 62

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            +    A    ++L+     +++       +   +F +W +E    +A    F+ T   R
Sbjct: 63  FSL---ADQLHISLDESKTFLES-----FLDQFPSFKKW-KEEIITNASTTGFVHTINNR 113

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            ++      S   +   E  +    +   G A    K   +  ++ K     L + L
Sbjct: 114 RRRINNLTDSSDKKTLAESKRIAVNSPIQGTAADIIKMCMI-EIFKKIHSTWLGVQL 169



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT--DEFNASMLY 648
              + +Q  + DI+   M+   K       G  ++L +HDEIV E PD   DE   + L 
Sbjct: 136 AVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVPDHLLDEVCVT-LK 194

Query: 649 HLMT 652
           +LM 
Sbjct: 195 YLME 198


>gi|322829428|gb|EFZ32819.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 576

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 24/227 (10%)

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           K     +   +   LR   + +G        G           S  H EL    T+    
Sbjct: 198 KKTHGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRL 257

Query: 350 ITSDPDPLQIISDC---VRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFET 404
            +++P+   I  +    +R   ++  G+K   + AD + +E   LA +A +   L+   +
Sbjct: 258 ASANPNCQNIPKEDKSPLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLRS 317

Query: 405 GEDLYVTTYARS--------------FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
             D +    A                 N  P  V    R   K+      Y  G K   +
Sbjct: 318 NVDFHCKRVAMMRPDLQYTEVLLRAKKNKEPEFVK--LRQQAKIFSFQRQYGAGVKMISQ 375

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
              +TGL  +   +L++         DA N    +  N+ + +I+D 
Sbjct: 376 ---STGLTQDQVRNLIEKERETYRGVDAFNSMVALSANNFDASIQDG 419


>gi|71402991|ref|XP_804342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain CL
            Brener]
 gi|70867265|gb|EAN82491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            cruzi]
          Length = 1607

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 24/227 (10%)

Query: 290  KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            K     +   +   LR   + +G        G           S  H EL    T+    
Sbjct: 1229 KKTHGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRL 1288

Query: 350  ITSDPDPLQIISDC---VRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFET 404
             +++P+   I  +    +R   ++  G+K   + AD + +E   LA +A +   L+   +
Sbjct: 1289 ASANPNCQNIPKEDKSPLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLRS 1348

Query: 405  GEDLYVTTYARS--------------FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
              D +    A                 N  P  V    R   K+      Y  G K   +
Sbjct: 1349 NVDFHCKRVAMMRPDLQYTEVLLRAKKNKEPEFVK--LRQQAKIFSFQRQYGAGVKMISQ 1406

Query: 451  MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
               +TGL  +   +L++         DA N    +  N+ + +I+D 
Sbjct: 1407 ---STGLTQDQVRNLIEKERETYRGVDAFNSMVALSANNFDASIQDG 1450


>gi|47934714|gb|AAT39795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 84/240 (35%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V    M   R+A  +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVARYMMLQKRAA--Q 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|302868656|ref|YP_003837293.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
 gi|302571515|gb|ADL47717.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
          Length = 552

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 46/137 (33%), Gaps = 10/137 (7%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
             R H E            T     LQ I   +R  V+A  G   VVAD   +E RVLA 
Sbjct: 283 GGRFHPEYVPGGVVSGRWATRGGGALQ-IPKVIRQAVVADPGWTFVVADAGQLEPRVLAA 341

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++    A   G DLY      +F           RA  KV  L   Y     A    
Sbjct: 342 VSEDERLAAAGGAG-DLYAALARDAF--------AGDRAKAKVALLGAMYGQTGGAAVPA 392

Query: 452 ASTTGLNLNTFAHLVKT 468
            +    N  T    V+ 
Sbjct: 393 LAVLRKNYPTAFGYVEA 409


>gi|47934752|gb|AAT39814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 79/238 (33%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTFRRLKDKVTTFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+   + TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVKFTNKTEKGNIIVDEKALNSIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG KLV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNKLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934716|gb|AAT39796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V    M   R  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVARYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|262155784|ref|ZP_06028907.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
 gi|262030375|gb|EEY49016.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
          Length = 684

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 78/462 (16%), Positives = 136/462 (29%), Gaps = 118/462 (25%)

Query: 70  AHNS-YFERTVLKACFNLDIPIHRWICTLVLAR-----------SNGLPSALKAVGEALK 117
            HN   ++  V+K    +++P  +   TLV AR            N     L  +  +  
Sbjct: 65  GHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIQDIDQRNSGKYTLGKLFGSHS 124

Query: 118 LSSQKMEEGKELIARFCKG-ETHECLYDRN-KPNHREA---WR------LFGEYCKGDVT 166
           L +  +  G  L   +    +  + +YD   KP   +    W+      + G+YC  DV 
Sbjct: 125 LEAWGVRLGGNLKMEYAPVIDPDQPVYDPTVKPKDAKKDPRWKGSIFTPMMGDYCMQDVR 184

Query: 167 VTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           V  ++F RLE   ++         E +  ++       G+  D   A  L   +   R  
Sbjct: 185 VNVDLFHRLERKVAELNYARSLKLEHDAAWVLAQQERNGFKFDEEKAIKLLGRLAGRREF 244

Query: 218 LDQELESLTYG-----------------------------------LVSSSRCLEKLKTW 242
           L  EL     G                                   +  +      +   
Sbjct: 245 LYNELIRTFGGWWVSDGVVVPERTVNYKNPLTASRTQGAPFTKVKWVDFNPSSRRHIIKV 304

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKL--NTLVEAM 298
           L    G   E+ T +   +V  +  K    P+A  +    +   R   L       +  +
Sbjct: 305 LTDR-GWTPEEFTPSGEAKVDETILKDLKFPEAKLMAEWFLVQKRLGQLADGNQAWLNTV 363

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           + DG +RG++   GA                                   +  S P+  Q
Sbjct: 364 HPDGFIRGSVNPNGA-------------------------------VTGRATHSFPNVAQ 392

Query: 359 IIS------DCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           + S         R      EG  L+ +D +G+E R LA      +  K        D++ 
Sbjct: 393 VPSCGAEYGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDGGKYIDVVLNGDIHW 452

Query: 411 TTYARS-------FNVAPAQVTKDQRAIGKVMELALGYQGGA 445
                +              + ++ R   K    A  Y  GA
Sbjct: 453 ANAQAAGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGA 494


>gi|315504872|ref|YP_004083759.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
 gi|315411491|gb|ADU09608.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
          Length = 552

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 46/137 (33%), Gaps = 10/137 (7%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
             R H E            T     LQ I   +R  V+A  G   VVAD   +E RVLA 
Sbjct: 283 GGRFHPEYVPGGVVSGRWATRGGGALQ-IPKVIRQAVVADPGWTFVVADAGQLEPRVLAA 341

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++    A   G DLY      +F           RA  KV  L   Y     A    
Sbjct: 342 VSEDERLAAAGGAG-DLYAALARDAF--------AGDRAKAKVALLGAMYGQTGGAAVPA 392

Query: 452 ASTTGLNLNTFAHLVKT 468
            +    N  T    V+ 
Sbjct: 393 LAVLRKNYPTAFGYVEA 409


>gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4]
 gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4]
          Length = 513

 Score = 74.4 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 77/262 (29%), Gaps = 64/262 (24%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F   G+ L    +   + V        P    + ++R  +   +       +++   D R
Sbjct: 208 FRREGIELASTRKHLLREV------DHPAVPLLLHHRDLSKLFSTNGWQ-WLDSWVRDNR 260

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G   +GRW+                                 P PL      
Sbjct: 261 FRPVYVPGGVV-SGRWASR------------------------GGGALQIPKPL------ 289

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            RS VIA  G   V+AD   +E R+LA M+G+   + A    +DLY    A +F+     
Sbjct: 290 -RSSVIADPGHTFVIADAGQLEPRILAAMSGDTRMVAA-AGADDLYAPVAAETFDGD--- 344

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   KV  L + Y   A   + +                       +  A  +  
Sbjct: 345 -----RGKAKVAILGVLYGATAGEARSL----------------LTLLRTRFPVAVEYVE 383

Query: 484 WMQENHPEHAIEDLFIGTACER 505
                     +   ++G AC  
Sbjct: 384 RAARAGERGEVVHSWLGRACPP 405


>gi|47934722|gb|AAT39799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.4 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V    M   R  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVARYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 151 AQVPAVPAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|239942253|ref|ZP_04694190.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239988720|ref|ZP_04709384.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291445710|ref|ZP_06585100.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291348657|gb|EFE75561.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 563

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 65/207 (31%), Gaps = 21/207 (10%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             Q+  R  R   E     T      T+    LQ I   +R  V+A  G +LVVAD   +
Sbjct: 277 WLQDWVREGRFRPEYQPGGTVSGRWTTNGGGALQ-IPKVIRQAVVADPGWRLVVADADQM 335

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG- 443
           E RVLA ++ ++  ++      DLY     R+F           R   K+  L   Y   
Sbjct: 336 EPRVLAAISRDRGLMEVAGHDGDLYKALSDRAF--------SGDREHAKLALLGAVYGQT 387

Query: 444 ---GAKAFQKMASTTGL---NLNTFAHLVKTNSAPEEW-----EDAENFCRWMQENHPEH 492
              G K    +     L    ++  A   +       W         +  +  +   P+ 
Sbjct: 388 SGDGLKNLAALRRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPPVVSAGQDEEAGIPQE 447

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSE 519
           A E                +   R + 
Sbjct: 448 APEGAGDAGGPAGSGGGTARARGRFTR 474


>gi|260878762|ref|ZP_05891117.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308091309|gb|EFO41004.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
          Length = 683

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 75/470 (15%), Positives = 138/470 (29%), Gaps = 120/470 (25%)

Query: 63  NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS-----------NGLPSALK 110
           N     + HN   ++  V+      ++P  +   TLV +R            N     L 
Sbjct: 57  NKASLTLGHNIIKYDHPVINKLTGYELPKDKSFDTLVASRLVFSNIKDIDQGNSGKYTLG 116

Query: 111 AVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDRN-KPNHREA---WR------LFGE 159
            +  +  L +  +  G +    +    +  + +YD   KP   +    W+      + G+
Sbjct: 117 KLFGSHSLEAWGIRLGGQQKMEYAPVIDPAQPVYDPTVKPKDAKKDPRWKGSIFTPMMGD 176

Query: 160 YCKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
           YC  DV V  E+F+RLE    +         E E  ++       G+  D   A  L   
Sbjct: 177 YCMQDVRVNVELFRRLERKIHQLGYARSMLLEHEAAWVLAQQERNGFKFDEEKAIKLLGR 236

Query: 211 VDVERTKLDQELESLTYG-----------------------------------LVSSSRC 235
           +   R  L  +L     G                                   +  +   
Sbjct: 237 LAGRREYLYNKLIETFGGWWVSDGVSVPARTINYKDPTKPSRVQGAPFTKVKWVDFNPSS 296

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKL-- 291
              +   L    G   ++ T +   +V  S  K    P+A  +    +   R   L    
Sbjct: 297 RRHIIKVLTDR-GWTPQEFTPSGEAKVDESILKELDFPEARLMAEWFLVQKRLGQLADGN 355

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
              +  ++ DG +RG++   GA                                   +  
Sbjct: 356 QAWLNTVHPDGFIRGSVNPNGA-------------------------------VTGRATH 384

Query: 352 SDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA---GEQWKLKAF 402
           S P+  Q+           R      +G  L+ +D +G+E R LA       +   +   
Sbjct: 385 SFPNVAQVPSCSAEYGAECRELFTVPDGWYLLGSDASGLELRCLANFMARYDDGKYIDVV 444

Query: 403 ETGEDLYVTTYARSFNVAPAQ-------VTKDQRAIGKVMELALGYQGGA 445
             G D++ +    +  +           + ++ R   K    A  Y  GA
Sbjct: 445 LNG-DIHWSNAQAAGFIPKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGA 493


>gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 601

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 84/262 (32%), Gaps = 39/262 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           E+  +  K  T + +          A    G+Y   +  +T  + +  E           
Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTETT 258
           ++L   L+ + G+ +   T T 
Sbjct: 576 KQLGVILYEKLGMPILSKTATG 597


>gi|297538972|ref|YP_003674741.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
 gi|297258319|gb|ADI30164.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
          Length = 515

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 105/377 (27%), Gaps = 73/377 (19%)

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-- 179
           K   GK+L     K ++ + L      + ++    F EY +  ++   E ++    +   
Sbjct: 77  KFISGKKLDKETIKEKSIKALMKPYYTDIKDLDNYFEEYYRR-ISFELETYQLFSHMLFS 135

Query: 180 -------------------SKEQELWYLDQTINDRGYCVDVA-LAHTLNQIVDVERTKLD 219
                                E  ++ L   +  RG   D   L      I D    +L 
Sbjct: 136 CWENMTVLAKSKGEWDRYIEVELPVFNLMTKVAVRGIKTDNKILREHKKNIDDDFFRELK 195

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +   ++ YGL         L   L    G  L +++       L        +   +   
Sbjct: 196 K--FAIEYGLFFEVPIANVLHDILSDR-GYDLTEMSVDFVLEFLPMVDNFGERV--IALQ 250

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           +++ SR A+  +      +        T+       T R        QNL +        
Sbjct: 251 KLQKSRVALANITLSKTRVCPIAETHSTV-------TSRMYYKNPTVQNLAKRY------ 297

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                    R   IA   + L   D    E  ++A ++ ++   
Sbjct: 298 -------------------------RDIFIADNDRTLSYVDYDQFEIGIMAALSKDKKLE 332

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           + +    D+Y       F        + +R+I K + LA  Y        +     G + 
Sbjct: 333 EIYSN-TDIYKKFSLEIFG------DEGKRSISKKLFLAFTYGMTHVNLLEAVKQHGGDK 385

Query: 460 NTFAHLVKTNSAPEEWE 476
                     +   EW 
Sbjct: 386 EVARLFFDQFAVFIEWR 402


>gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
 gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
          Length = 559

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 86/272 (31%), Gaps = 26/272 (9%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +   L++   +R     G         R  R                +     LQ I   
Sbjct: 263 IAPLLEYKELARLHSAHG-WAWLDQWVRDGRFRPVYVVGGVVSGRWASRGGAALQ-IPKL 320

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R CV A  G  LVVAD A +E RVLA ++G++   +      DLY +     F   P +
Sbjct: 321 LRGCVRADPGWTLVVADAAQLEPRVLAALSGDRRLAEV-SADADLYTSLTHTLFGRTPIE 379

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
              D RA  K+  L+  Y G +                 A L+  +     +  A +F  
Sbjct: 380 ---DDRARAKIAMLSAMYGGTSG--------------EAAPLL--SLLRRRFPHAVSFVE 420

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                     +    +G       +AWR     ++    + + A     + G+       
Sbjct: 421 HAAREGERGGLVRSRLGRTSLPPPEAWRT----LTGGSGDENSARRAARDWGRFTRNFVV 476

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           +     +       L   LP+   LV+     
Sbjct: 477 QASAADWTAVLLATLRRRLPAPAHLVFFQHDE 508


>gi|189427035|ref|YP_001950134.1| DNA polymerase I [Ralstonia phage RSL1]
 gi|189233347|dbj|BAG41704.1| DNA polymerase I [Ralstonia phage RSL1]
          Length = 1050

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 76/518 (14%), Positives = 161/518 (31%), Gaps = 88/518 (16%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTD--VTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           DHP+  W       + + L++        + I  +   F+  V++    + I        
Sbjct: 280 DHPLTHWSKEERQYIKRELRQRFAAKTGPLLITFNGHMFDLRVIRQILRIPIMWLPVWEI 339

Query: 97  LVLARSNGLPSAL-KAVGEALKLSSQKMEEGK------------ELIARFCKGETHECLY 143
           +    S    ++L  A   A+    +K   G                A F K +      
Sbjct: 340 MFAEHSLDENASLLNAASNAVNPDGKKATYGGLAPIFTSYGNDHYYTAAFSKAQRSTSGQ 399

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKR-LEPLSSKEQELW--------YLDQTIND 194
            +  P++ +    F EY   D      I +  ++  S  E +          +++Q ++D
Sbjct: 400 VK--PDNPD----FLEYASTDTVSIAHIRQMQIKRASYMEIDGQSFAPYFVRHMEQQMSD 453

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK---------TWLFL 245
                  AL+H  N    + R  L   +   +      ++ L++L+           L  
Sbjct: 454 TA----HALSHMRNDGSSLSRPALKHLMGPKSPLREMMAKTLDQLRLMNEVRKANKELLS 509

Query: 246 ETGLHLEDL-------------TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++G   + L                   ++      L P ++     + +  +  +    
Sbjct: 510 DSGFKAKSLFGGVSDKWIFQPTKPDHKAKLFFDVLGLEPLSMSKITGKPQIDKEFIKHYK 569

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
              + +   G  +   + + ++    WS  +     L   +      D  +       + 
Sbjct: 570 DKNKVVALYGEYQALTKVI-STYVKAWSRRLNTA--LDESTDDSLRADYFLVDTGRLGSK 626

Query: 353 DPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-- 405
           DP+  QI S       +++  +A  G  LV  D +  E R+ +  +G++    AF TG  
Sbjct: 627 DPNLQQIPSRGPLSKLLKTLFVARPGYLLVRFDYSAHEVRIWSVASGDKVIAAAFRTGLE 686

Query: 406 --------------------EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
                                D ++    R F     +     R   K +   + Y  GA
Sbjct: 687 LRQAFIQDPSDANKKALKEKGDFHILNVQRFFKKLVDKDHP-LRDAVKKVVFGVIYGKGA 745

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +   +      ++ +  A + K        +DA+   R
Sbjct: 746 ETLGEDTKEGDIS-SLRAEVAKLYDESLTCKDAKRLAR 782


>gi|47934708|gb|AAT39792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 79/238 (33%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVKFKKKTEKGNVIVDEKVLNSIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG +LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|326778493|ref|ZP_08237758.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
 gi|326658826|gb|EGE43672.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
          Length = 558

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             Q+  R  R   E     T      T+    LQ I   +R  V+A  G +LVVAD   +
Sbjct: 277 WLQDWVREGRFRPEYQPGGTVSGRWTTNGGGALQ-IPKVIRQAVVADPGWRLVVADADQM 335

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ ++  ++      DLY     R+F           R   K+  L   Y   
Sbjct: 336 EPRVLAAISRDRGLMEVAGHDGDLYKALSDRAF--------SGDREHAKLALLGAVYGQT 387

Query: 445 AKAFQKMASTTGLNLNTFAHLVK 467
           +    K  +            V 
Sbjct: 388 SGDGLKNLAALRRRFPLAVAYVD 410


>gi|322489593|emb|CBZ24851.1| mitochondrial DNA polymerase I protein D,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1579

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 20/153 (13%)

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIEA 386
             S  H EL    T+     +++P+   I  +    +R   I+  G K   + AD + +E 
Sbjct: 1243 DSCIHHELIHNKTNTGRLASANPNCQNIPKEDKSSLRDMFISRFGDKGMCIEADYSQLEV 1302

Query: 387  RVLAWMAGEQWKLKAFETGEDLY--VTT-------YARSFNVAPAQVTKD---QRAIGKV 434
              LA +A ++  L+      D +    T       Y      A      +    R   K+
Sbjct: 1303 VALAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRAKKNKEPEFVKLRQQAKI 1362

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  Y  G    + ++ +TGL  +    L++
Sbjct: 1363 FSFQRQYGAGV---RMLSQSTGLTQDQVRMLIE 1392


>gi|47934744|gb|AAT39810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 79/238 (33%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVKFKKKTEKGNIIVDEKVLNSIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG +LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 443

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 39/284 (13%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 81  AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 140

Query: 75  FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         I +       +L     +   +         K  +      +
Sbjct: 141 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 200

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
           E+  +  K  T + +          A    G+Y   +  +T  + +  E           
Sbjct: 201 EIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 250

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            L+  E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    
Sbjct: 251 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 309

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           ++L   L+ + G+ +   T T       +          + N R
Sbjct: 310 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAALGSLENMR 353


>gi|218506492|ref|ZP_03504370.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 156

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 15/126 (11%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALA 204
                Y   D  VT  ++  L+P  +           E+ L  +   +  RG  VD  + 
Sbjct: 32  DRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQIL 91

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQ 260
             L+  +     +L+ E+ +L  G   +    ++L   LF + GL     T+T    T  
Sbjct: 92  SRLSGELAQGAARLEDEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSA 150

Query: 261 RVLSSN 266
            VL   
Sbjct: 151 SVLEDL 156


>gi|47934666|gb|AAT39771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D+  AH+L   +  E   ++ EL+ +   +V                   +  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEVNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+    +TE       ++VL    +  P+A  V    M   R  V +
Sbjct: 61  SRKQIAERL-KGLGVTFNKMTEKGNIIVDEKVLEGIDR--PEAKAVARYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ + A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLGAVKDDGRVHGRVITNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          R C    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 151 AQVPAVSAPFGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|150404361|gb|ABR68494.1| DNA polymerase I [Lactobacillus casei]
 gi|150404383|gb|ABR68505.1| DNA polymerase I [Lactobacillus casei]
 gi|150404403|gb|ABR68515.1| DNA polymerase I [Lactobacillus casei]
 gi|150404405|gb|ABR68516.1| DNA polymerase I [Lactobacillus casei]
 gi|150404411|gb|ABR68519.1| DNA polymerase I [Lactobacillus casei]
 gi|150404421|gb|ABR68524.1| DNA polymerase I [Lactobacillus casei]
 gi|150404425|gb|ABR68526.1| DNA polymerase I [Lactobacillus casei]
 gi|150404427|gb|ABR68527.1| DNA polymerase I [Lactobacillus casei]
 gi|150404431|gb|ABR68529.1| DNA polymerase I [Lactobacillus casei]
 gi|225349756|gb|ACN87803.1| PolA [Lactobacillus casei]
 gi|225349758|gb|ACN87804.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 78/252 (30%), Gaps = 37/252 (14%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLPS----AL 109
            L    V     ++  + TV     N+       + +      ++LA     P      L
Sbjct: 4   LLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDL 63

Query: 110 KAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----YC 161
             + E      L   +   GK                 R  P   + +  F       + 
Sbjct: 64  GKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLFGQFARKSDALFA 109

Query: 162 KG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              D+T   E  ++ +  +  E  L  +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277
           ++ +   GL  +    ++L   LF +  L +   T+T       VL+  K  +P    + 
Sbjct: 170 KIYAEA-GLKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVL 289
           + R  A  ++  
Sbjct: 229 DYRGWAKLNSTY 240


>gi|71735368|ref|YP_276338.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555921|gb|AAZ35132.1| DNA polymerase I domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 512

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 8/142 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           R    +D   +        DP  LQ ++   R+ +I  +GK     D    EA ++A ++
Sbjct: 266 RIFPIVDCFGSITSRIYFKDP-SLQNLAKHHRNILIPDDGKVFSYVDYEQYEAGIMAALS 324

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L  +  G DLY    +  F        +++R   K + L+  Y    +     A 
Sbjct: 325 NDETLLTLYADG-DLYKQVASGIFQ------DEERRKEAKRLFLSYAYGMKNRHLIDAAF 377

Query: 454 TTGLNLNTFAHLVKTNSAPEEW 475
             G +        K     E+W
Sbjct: 378 GYGADRRLTKDFFKRFETFEKW 399


>gi|88856925|ref|ZP_01131576.1| DNA polymerase A [marine actinobacterium PHSC20C1]
 gi|88813801|gb|EAR23672.1| DNA polymerase A [marine actinobacterium PHSC20C1]
          Length = 517

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 85/286 (29%), Gaps = 41/286 (14%)

Query: 188 LDQTI---NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           LDQ       RG  VDV        + +   T      + +    V +    E +  WL 
Sbjct: 146 LDQAFRESQRRGVRVDVEGLREAQDL-NRSVTAAATAEDGIDLSAVGTDAQAEAVTGWLA 204

Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS--AVLKLNTLVEAMNSDG 302
                                        I+ F+ R   SR      ++    E     G
Sbjct: 205 GR------------------------DITIRDFDGRPSLSRDFFDRAQIPDSSEGRYFWG 240

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R R       A  +           NL         +            + P  L  +S 
Sbjct: 241 RFRAAASRRSARLSLNQIAN-----NLHDDGHVFPMVHLRGAKTGRGSVTGP-ALTSLSK 294

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             RS +I  +G   +  D    E  V A ++ ++   +A  T  D+Y     + F    A
Sbjct: 295 KYRSLIIPEDGAVFISLDFDRAEPTVAAALSQDEGLQEALST-TDVYRELAVKVFG-EQA 352

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +     RA  K + L + Y  GA   Q ++   G++       +++
Sbjct: 353 REDDIARATCKTIFLGILYGRGA---QGLSQQLGISKAEATETIRS 395


>gi|256831724|ref|YP_003160451.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
 gi|256685255|gb|ACV08148.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
          Length = 600

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 78/501 (15%), Positives = 126/501 (25%), Gaps = 151/501 (30%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             + RE++    P      E    +Q        V  A    +            QEL  
Sbjct: 193 ALIAREMYAVGVPWDRDHHEALLREQLGERPAVGVRPAALEAV-----------AQELRR 241

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           L      +    + L   L    G+ +   ++   +          P A+         +
Sbjct: 242 LLDAPELNPDSPKDLLRALNSA-GIPVTTTSKWALRE------HRHP-ALAPLERYKHLA 293

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R         ++   SDGR R      G   TGRW         LPR             
Sbjct: 294 RLWTAHGWAWLDEWVSDGRYRPVYTPGGVV-TGRWGADGGGALQLPR------------- 339

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R    A +G   V+AD + +E RVLA M+G+    +A   
Sbjct: 340 ------------------AIRGAARAGDGFTFVIADASQLEPRVLAAMSGDAAMAEAGR- 380

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D+Y         V P+      R   K   L   Y G          TTG++      
Sbjct: 381 GGDMYQRIADA--GVVPS------REHAKYGMLGAMYGG----------TTGVSAQVLPQ 422

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                   + +  A                   ++G             H          
Sbjct: 423 F------RQAFPTAMAMVESAARVGERGGQVTTWLGRTSPPGVV----SHPD-------- 464

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                   E+  A +AR+RR     Y +  +N                            
Sbjct: 465 --------ESDDADVARERRLRSRSYGRFTRNF--------------------------- 489

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------------IVLTVHDEI 632
                           IVQ  + +     M+      +             +V  +HDE+
Sbjct: 490 ----------------IVQGSAAEWAMAWMVEIRLRLHQLSLGDPTLSAPSLVFFLHDEV 533

Query: 633 VCETPDTDEFNASMLYHLMTS 653
           +  TP       + +  +   
Sbjct: 534 LIHTPVEWAETVAEVVRVSAR 554


>gi|68069867|ref|XP_676845.1| DNA polymerase 1 [Plasmodium berghei strain ANKA]
 gi|56496719|emb|CAH97694.1| DNA polymerase 1, putative [Plasmodium berghei]
          Length = 842

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 19/188 (10%)

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR-LRGTLQFLGASRTGRWSGC 322
              K+   Q I        + +     +  L + +  + + +      LGAS TGR S  
Sbjct: 669 EKEKEKIKQIINNIKLYRESKKLFQNYIENLPKHIQKNTKKIHCNFNQLGAS-TGRLSCD 727

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+      H +    I+       ++  P  I    +++  +    K L+  D  
Sbjct: 728 QPNLQNI------HSKFRCTIS----LKFNELKPTSIQKQDIKNKSV---NKNLLTFDYK 774

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E  V+A+++ +   LK      D++V T    FN    +VTK+ R + K +   + Y 
Sbjct: 775 QMELFVMAYLSFDNQLLK-MLNNSDVFVET-KVLFNT--NEVTKELRRMTKTVIYGILYG 830

Query: 443 GGAKAFQK 450
                  K
Sbjct: 831 QSENGLAK 838


>gi|260906871|ref|ZP_05915193.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brevibacterium linens BL2]
          Length = 613

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 91/305 (29%), Gaps = 44/305 (14%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
            R                 S    LQ I   +R  + A  G +L+ AD+A +E R LA M
Sbjct: 304 GRYRPVYVPGGVVTGRWAASGGGALQ-IPRQLRPALRADPGWRLISADVAQLEPRALAAM 362

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++   +A   G DLY         +    +    R   K+  L   Y        ++ 
Sbjct: 363 SGDRAMAEAGR-GRDLYS-------GLVDEGIVA-TRQEAKIAVLGAMYGSTTGDSGRL- 412

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                 +  A        E      +   ++G +     + WR+
Sbjct: 413 ---------------VPRLRTSFPAAMGLVDSAAEVGAAGGVVSTWLGRSSPVPGEGWRR 457

Query: 513 KHSRVSEL---WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
             S  ++      + ++A     + G+       +     +      +L L L    ++ 
Sbjct: 458 VQSAANQFDATPADENRARRAAGDQGRFTRNFVVQGTAAEWALAWLADLRLRLSQLPAID 517

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
             + G   S ++      +   T G               +A+           +V  +H
Sbjct: 518 DGNPGAT-SAVDGDGGTTSAGETMG--------------HVADASGPVFSRRAHLVFFLH 562

Query: 630 DEIVC 634
           DE++ 
Sbjct: 563 DEVIV 567


>gi|32442289|gb|AAP82215.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 111/351 (31%), Gaps = 58/351 (16%)

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEP-LSSKEQELWYL--DQTINDRGYCVDVALAHTL 207
           ++A  L  E     + V  E+    +P L   +    Y+  D  ++ RG           
Sbjct: 97  QQAMELLAELKAKQLAVEDEVHSTFKPKLVDDKLVTPYVKKDGELSKRGMT--------- 147

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
           ++  D        E       +  +    +++  +L    G   +  T T    V   ++
Sbjct: 148 DEEYDRCIKTQSVEPFMRQKLVDFNLGSRKQIGEYLID-FGWIPKKFTPTGQPIV---DE 203

Query: 268 KLTPQAIQVFNNRMRA-SRSAVLKLNTLVEAMNS--DGRLRGTLQFLGASRTGRWSGCVF 324
               +   +   ++ A       ++  +   ++   D R+ G++   G + TGR +    
Sbjct: 204 GTLKKIEHIREAKLIADFLLYQKRIAQVTSRIDELKDDRVHGSVIPNG-TITGRMTHRNP 262

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
                                        P+         RSC    EG+KLV  D +G+
Sbjct: 263 NM------------------------AQVPNAGSPYGKECRSCWTIPEGRKLVGIDASGL 298

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA    +   ++    G D++  T      +         R   K    AL Y  G
Sbjct: 299 ELRMLAHYMNDPEYIEEVVNG-DIHT-TNQNLAGLKT-------RDQAKTFIYALVYGAG 349

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                K+ S  G  L     L +T    +     +N    +Q+      ++
Sbjct: 350 D---AKIGSVAGGGLKKGKELKQTF--FKNLPSLKNLKEKVQKASERGYLK 395


>gi|47934658|gb|AAT39767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D+  AH+L   +  E   ++ EL+ +   +V                   +  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEMNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+    +TE       ++VL    +  P+A  V    M   R  V +
Sbjct: 61  SRKQIAERL-KGLGVTFNKMTEKGNIIVDEKVLEGIDR--PEAKAVARYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ + A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLGAVKDDGRVHGRVITNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          R C    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 151 AQVPAVSAPFGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934704|gb|AAT39790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934706|gb|AAT39791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934746|gb|AAT39811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 79/238 (33%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG +LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 239

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 59/171 (34%), Gaps = 38/171 (22%)

Query: 230 VSSSRCLEKLKTWLFLETGL---HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           V +    +++   L  +  +             +  L  N+K+   A+ V        R 
Sbjct: 98  VFNVASRQQVAERLAQKGAVWCDTTPSGKPKVDEATLKQNEKIAEAAL-VLEYLTLQKRY 156

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
            +LK    ++A+  DGR+ G +   GA                                 
Sbjct: 157 GMLK--NWLDAVQDDGRIHGRVNTCGA-------------------------------VT 183

Query: 347 PTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                S P+  QI SD + R C +  EG KLV  D +G+E R+LA    + 
Sbjct: 184 GRMTHSSPNMAQIPSDSLYRQCFVVPEGSKLVGIDASGLELRMLAHYMDDP 234


>gi|325272840|ref|ZP_08139177.1| DNA polymerase [Pseudomonas sp. TJI-51]
 gi|324102045|gb|EGB99554.1| DNA polymerase [Pseudomonas sp. TJI-51]
          Length = 683

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 90/304 (29%), Gaps = 47/304 (15%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLTPQAIQVFNNRMRASRSA 287
           +  +    + +   L    G   E  T+    +V      KL     ++    +  ++  
Sbjct: 297 VEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLNYPPCKLLTEYLLVAKRI 356

Query: 288 VLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                       +   GR+ G++   GA+ TGR +        +P               
Sbjct: 357 SQLAEGKQAWMLVEKQGRIHGSVNPNGAA-TGRATHAYPNVAQVP--------------- 400

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFE 403
                +  P  +       R       G  LV AD +G+E R LA      +  K     
Sbjct: 401 ----ASGSPYGIDC-----RELFTVPHGWLLVGADASGLELRCLAHFMARYDGGKYVDIL 451

Query: 404 TGEDLYVTTYARSFNVAPAQ------VTKDQRAIGKVMELALGYQGG-------AKAFQK 450
              D++     ++  +   +      + K  R   K    A  Y  G             
Sbjct: 452 LNGDIHWAN-VQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVGTIVYGMVA 510

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            A   GL+   + HL+      ++  D E      ++       +   +    + VK+A 
Sbjct: 511 KAKALGLD---YQHLLDVFFNGQDNPDEEALKAAGKKLKATFLRKTPALKKLVKAVKEAA 567

Query: 511 RQKH 514
           ++ H
Sbjct: 568 KRGH 571


>gi|288924467|ref|ZP_06418439.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
 gi|288344186|gb|EFC78743.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
          Length = 457

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 63/205 (30%), Gaps = 43/205 (20%)

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L++ +   P    +   R     +       L E + +DGRLRG  ++ G+         
Sbjct: 261 LTALRAAHPAVDALLRWRRAERVATTYGFRWLDEHVGADGRLRG--EWRGSDGAAGRMTA 318

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
                NLP                                 +R  V+A  G + V ADL 
Sbjct: 319 AAGLHNLPAD-------------------------------LRVVVVAEPGHQFVRADLG 347

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA ++G++    A     DLY    AR             R   KV  LA  Y 
Sbjct: 348 QIEPRVLAVVSGDRELAAATGQD-DLYAPVAARL---------GVDRPTAKVAVLAAMYG 397

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVK 467
             +    +       +       + 
Sbjct: 398 QTSGTAGQALRQMRRSYPVALAYLD 422


>gi|269956874|ref|YP_003326663.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305555|gb|ACZ31105.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
          Length = 546

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 82/257 (31%), Gaps = 27/257 (10%)

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            + +L +   L P +       ++ +   V  L+           +   +++   SR   
Sbjct: 195 IRELLDAPPTLNPDSHPSLLKALQYAGIGVRSLSQWELMEVQHPVVEPLMEYKKLSRLLT 254

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            +G         R  R   E            +     LQ +   VR  V+A  G  LVV
Sbjct: 255 ANG-WNWLDTWVRDGRFRSEYVVGGVVTGRWSSVGGGALQ-LPKEVRRAVVADPGWTLVV 312

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD+A +E RVLA M+ +     A   G D+Y        + A A      R + KV  L 
Sbjct: 313 ADVAQLEPRVLAAMSRDDAMAAAGR-GGDMY---AGIVASGAVAT-----RDLAKVGMLG 363

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
             Y G          TTG +      L +T      +  A               +   +
Sbjct: 364 AMYGG----------TTGASAQVLPSLART------FPRAIALVEDAARAGERGEVVSTW 407

Query: 499 IGTACERVKKAWRQKHS 515
           +G    R    W +  +
Sbjct: 408 LGRGSPRPGADWERAQA 424


>gi|150404387|gb|ABR68507.1| DNA polymerase I [Lactobacillus casei]
 gi|150404391|gb|ABR68509.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|150404419|gb|ABR68523.1| DNA polymerase I [Lactobacillus casei]
 gi|150404429|gb|ABR68528.1| DNA polymerase I [Lactobacillus casei]
 gi|225349752|gb|ACN87801.1| PolA [Lactobacillus casei]
 gi|225349762|gb|ACN87806.1| PolA [Lactobacillus casei]
 gi|225349764|gb|ACN87807.1| PolA [Lactobacillus casei]
 gi|225349768|gb|ACN87809.1| PolA [Lactobacillus casei]
 gi|225349770|gb|ACN87810.1| PolA [Lactobacillus casei]
 gi|225349772|gb|ACN87811.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 37/252 (14%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLPS----AL 109
            L    V     ++  + TV     N+       + +      ++LA     P      L
Sbjct: 4   LLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDL 63

Query: 110 KAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----YC 161
             + E      L   +   GK                 R  P   + +  F       + 
Sbjct: 64  GKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLFGQFARKSDALFA 109

Query: 162 KG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              D+T   E  ++ +  +  E  L  +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277
           ++ +   G+  +    ++L   LF +  L +   T+T       VL+  K  +P    + 
Sbjct: 170 KIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVL 289
           + R  A  ++  
Sbjct: 229 DYRGWAKLNSTY 240


>gi|257068677|ref|YP_003154932.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
 gi|256559495|gb|ACU85342.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
          Length = 590

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 80/279 (28%), Gaps = 38/279 (13%)

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA------SRSAVLKLNTLVEAMNSD 301
           G     + ET  +   +    L P        R         + ++  +L          
Sbjct: 218 GTPPRRMVETGAEVREALGDPLVPLDSAPKLLRALHRAGIDVASTSQWELKEHQHPA--- 274

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
             +   LQ+   SR    +G            R                +S    LQ I 
Sbjct: 275 --IAPLLQYKKMSRLLTANG-WTWLDEWVHEGRYRPLYVPGGVVTGRWASSGGGALQ-IP 330

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R  + A  G  LV AD++ +E RVLA M+G++  + A   G DLY         +  
Sbjct: 331 RQLRPALRADPGWLLVSADVSQLEPRVLAAMSGDRAMIAAGA-GRDLYS-------GIVE 382

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A V    R   K+  L   Y G      ++                     + + DA   
Sbjct: 383 AGVVS-TRQEAKIGVLGALYGGTTGDSGRV----------------VPRLRQTFPDAMRL 425

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                           ++G +     + W +      ++
Sbjct: 426 VDDAAATGERSGTVTTWLGRSSPAPDEEWIRAQRAAHQV 464


>gi|289976608|gb|ADD21653.1| DNA polymerase [Caulobacter phage Cd1]
          Length = 797

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 108/370 (29%), Gaps = 84/370 (22%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVI---ASEGKKLVVADLAGIE 385
               H  L+   T      +S+P+   +  D    V+S  I     EGK +   D   +E
Sbjct: 430 DGIIHHMLNHTSTVTARFSSSNPNLQNLPKDGKSLVKSVFISRFGPEGKVIQS-DFTALE 488

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ------VTKD-----QRAIGKV 434
             + A +   +  +   + G D++    +++  +   +      V K      +R   K+
Sbjct: 489 VYIQAILTDCRQLILDLKDGLDMHCVRVSQAEGIPYEEAYRLCVVEKVKEWSTKRTKAKI 548

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  GA     +A +TG+       L++  +    + + E F   + +    +++
Sbjct: 549 FSFQRAYGAGA---ALIAESTGMAREEVDALIEAENTR--YPEIEKFYERLTKKIMANSV 603

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                             +H  +  L     ++  QT                       
Sbjct: 604 PTNKF------------AQHPDLPHLTCNFRKSTYQT----------------------- 628

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEG 613
                   P G+   YR+             +     ++     +N +VQ    +     
Sbjct: 629 --------PDGKLYSYRESPAPEFLAKAPASRGGCTTSFSPTEIKNYVVQGGGGEWAKAA 680

Query: 614 MMNATKAGYD---------IVLTVHD--------EIVCETPDTDEFNASMLYHLMTSNPS 656
           M  A +A Y          +V  VHD        E+  E               M     
Sbjct: 681 MWLAIRAFYARGNFGGRGLLVNQVHDALYADAAKEVALEVAALLHACMEAASEFMEYYFD 740

Query: 657 WAKGLPLKAE 666
           W   +P+ ++
Sbjct: 741 WEVKVPVPSD 750


>gi|289624730|ref|ZP_06457684.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 517

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 8/142 (5%)

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           R +  +D   +        DP  LQ ++   R  ++  EG+     D    EA ++A ++
Sbjct: 266 RIYPIVDCFGSITSRIYFKDP-SLQNLAKHHRDILVPDEGRAFSYVDYEQYEAGIMAALS 324

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L+ +  G DLY       F          +R   K + L+  Y    +     A 
Sbjct: 325 GDEKLLELYADG-DLYKQVANDIFEGE------GRRKEAKRLFLSYAYGMKNRHLIDAAF 377

Query: 454 TTGLNLNTFAHLVKTNSAPEEW 475
             G +        K     EEW
Sbjct: 378 GYGADRRATKTFFKQFGKFEEW 399


>gi|88854986|ref|ZP_01129651.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88815514|gb|EAR25371.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 558

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 89/297 (29%), Gaps = 53/297 (17%)

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           L  E+  L      +      L   L +  G+                 K+L    I   
Sbjct: 210 LVDEIRELLDAPQLNPESPSDLLRALNVA-GIQTNS-------TRAWELKQLRHPVISPL 261

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +  + +R         +++   DGR R                                
Sbjct: 262 LHYKKLARLLTANGWNWLDSWVHDGRFR-------------------------------P 290

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +            TS    LQ +   +R  VI   G KLVVAD + +E R+LA M+ ++ 
Sbjct: 291 DYVPGGVVTGRWATSGGGALQ-LPHLIRGAVIPDPGWKLVVADASQLEPRILAAMSADRG 349

Query: 398 KLKAFETGEDLYV-TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
            ++A  +G DLY     + +          + RA  K+  L   Y        ++     
Sbjct: 350 MVEAGSSG-DLYEGIVASGAV---------ETRAHAKLAMLGAMYGATTGESGRLMPKLA 399

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                   LV+  +   E  +  +    +  + P       +  +     + A R++
Sbjct: 400 RAYPRAIQLVEDAARAGERGEIVST--QLGRSSPRGEDTGTYDESLTPAERAALRER 454


>gi|47934608|gb|AAT39742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 83/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV  A  L   V  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDVMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V +  M   R  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVAHYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLKAVKDDGRVHGRVVTNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    +         G D++ 
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILNG-DIHT 209


>gi|47934748|gb|AAT39812.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934754|gb|AAT39815.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934758|gb|AAT39817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934760|gb|AAT39818.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934800|gb|AAT39838.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 78/238 (32%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934786|gb|AAT39831.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 78/238 (32%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934756|gb|AAT39816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 78/238 (32%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEETGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934668|gb|AAT39772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 48/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCLEKLKTWLFL---- 245
              G+ +DV  A  L+  +      ++ E++ +   +V    S +  ++LK  +      
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKITEFNPG 60

Query: 246 ----------ETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293
                     E G   +  TET   +V  +  +    P+A  +    M   R  V  +++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILESIDLPEAQLIAEYLMIQKR--VGLIDS 118

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            ++ ++    R+ G +  LG + TGR +        +P                     +
Sbjct: 119 WLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------SVA 158

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     +G +L+  DL+GIE R LA    +    +    G D++ 
Sbjct: 159 KPY-----GKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|47934736|gb|AAT39806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 78/238 (32%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGSSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934688|gb|AAT39782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 48/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCLEKLKTWLFL---- 245
              G+ +DV  A  L+  +      ++ E++ +   +V    S +  ++LK  +      
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEIFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 246 ----------ETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293
                     E G   +  TET   +V  +  +    P+A  +    M   R  V  +++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILESIDLPEAQLIAEYLMIQKR--VGLIDS 118

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            ++ ++    R+ G +  LG + TGR +        +P                     +
Sbjct: 119 WLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------SVA 158

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     +G +L+  DL+GIE R LA    +    +    G D++ 
Sbjct: 159 KPY-----GKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|150404363|gb|ABR68495.1| DNA polymerase I [Lactobacillus casei]
 gi|150404397|gb|ABR68512.1| DNA polymerase I [Lactobacillus casei]
 gi|150404399|gb|ABR68513.1| DNA polymerase I [Lactobacillus casei]
 gi|150404401|gb|ABR68514.1| DNA polymerase I [Lactobacillus casei]
 gi|150404407|gb|ABR68517.1| DNA polymerase I [Lactobacillus casei]
 gi|150404413|gb|ABR68520.1| DNA polymerase I [Lactobacillus casei]
 gi|150404415|gb|ABR68521.1| DNA polymerase I [Lactobacillus casei]
 gi|150404439|gb|ABR68533.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 78/247 (31%), Gaps = 27/247 (10%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLPS--ALKA 111
            L    V     ++  + TV     N+       + +      ++LA     P   +   
Sbjct: 4   LLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDL 63

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----YCKG-DV 165
              A       M   +++  +  K         R  P   + +  F       +    D+
Sbjct: 64  GKIAEDHDYHDMPRDEDIYGKGAK---------RQVPEDDKLFGQFARKSNALFALRPDL 114

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           T   E   + +  +  E  L  +   +  +G  ++      +          L++++ + 
Sbjct: 115 TGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAE 174

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282
             G+  +    ++L   LF +  L +   T+T       VL+  K  +P    + + R  
Sbjct: 175 A-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGW 233

Query: 283 ASRSAVL 289
           A  ++  
Sbjct: 234 AKLNSTY 240


>gi|47934718|gb|AAT39797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G  +DV  A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGSKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V    M   R  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVARYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934662|gb|AAT39769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V +  M   R  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVAHYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLKAVKDDGRVHGRVVTNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    +         G D++ 
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILNG-DIHT 209


>gi|47934710|gb|AAT39793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 79/235 (33%), Gaps = 49/235 (20%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSRCLE 237
           G+ +D   A  L   +  E   ++ EL+S+   +V                   +    +
Sbjct: 4   GFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPGSRK 63

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLV 295
           ++   L    G+  +  TE     V          P+A  V    M   R  V ++++ +
Sbjct: 64  QIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKR--VAQIDSWL 120

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           +A+  DGR+ G +   GA  TGR +                                 P 
Sbjct: 121 KAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQVPA 155

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                    RSC    EG +LV  D +G+E R+LA    ++        G D++ 
Sbjct: 156 VSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|146081058|ref|XP_001464182.1| mitochondrial DNA polymerase I protein D [Leishmania infantum
           JPCM5]
          Length = 1073

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 20/153 (13%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIEA 386
            S  H EL    T+     +++P+   I  +    +R   I+  G K   + AD + +E 
Sbjct: 737 DSCIHHELIHNKTNTGRLASANPNCQNIPKEDKSSLRDMFISRFGDKGMCIEADYSQLEV 796

Query: 387 RVLAWMAGEQWKLKAFETGEDLY--VTT-------YARSFNVAPAQVTKD---QRAIGKV 434
             LA +A ++  L+      D +    T       Y      A      +    R   K+
Sbjct: 797 VALAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRAKKIKEPEFVKLRQQAKI 856

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                 Y  G    + ++ +TGL  +    L++
Sbjct: 857 FSFQRQYGAGV---RMLSQSTGLTQDQVRMLIE 886


>gi|322497562|emb|CBZ32636.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1579

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 20/153 (13%)

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIEA 386
             S  H EL    T+     +++P+   I  +    +R   I+  G K   + AD + +E 
Sbjct: 1243 DSCIHHELIHNKTNTGRLASANPNCQNIPKEDKSSLRDMFISRFGDKGMCIEADYSQLEV 1302

Query: 387  RVLAWMAGEQWKLKAFETGEDLY--VTT-------YARSFNVAPAQVTKD---QRAIGKV 434
              LA +A ++  L+      D +    T       Y      +      +    R   K+
Sbjct: 1303 VALAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRSKKIKEPEFVKLRQQAKI 1362

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  Y  G    + ++ +TGL  +    L++
Sbjct: 1363 FSFQRQYGAGV---RMLSQSTGLTQDQVRMLIE 1392


>gi|321399177|emb|CAM66559.2| putative mitochondrial DNA polymerase I protein D [Leishmania
            infantum JPCM5]
          Length = 1579

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 20/153 (13%)

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIEA 386
             S  H EL    T+     +++P+   I  +    +R   I+  G K   + AD + +E 
Sbjct: 1243 DSCIHHELIHNKTNTGRLASANPNCQNIPKEDKSSLRDMFISRFGDKGMCIEADYSQLEV 1302

Query: 387  RVLAWMAGEQWKLKAFETGEDLY--VTT-------YARSFNVAPAQVTKD---QRAIGKV 434
              LA +A ++  L+      D +    T       Y      A      +    R   K+
Sbjct: 1303 VALAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRAKKIKEPEFVKLRQQAKI 1362

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  Y  G    + ++ +TGL  +    L++
Sbjct: 1363 FSFQRQYGAGV---RMLSQSTGLTQDQVRMLIE 1392


>gi|47934606|gb|AAT39741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 2   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 61

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V +  M   R  V +
Sbjct: 62  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVAHYMMLQKR--VAQ 116

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 117 IDSWLKAVKDDGRVHGRVVTNGAV-TGRMTHQSPNM------------------------ 151

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    +         G D++ 
Sbjct: 152 AQVPAVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILNG-DIHT 210


>gi|32442279|gb|AAP82210.1| DNA polymerase [Podovirus SOG]
          Length = 406

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 99/355 (27%), Gaps = 76/355 (21%)

Query: 160 YCKGDV----TVTREIFKRLEPLSSKEQELWYLDQTI----NDRGYCVDVALAHTLNQIV 211
           YCK DV     V  ++   L        +L +  Q I       G+ +D  +A  +    
Sbjct: 43  YCKQDVAINEKVYLQLKDELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTC 102

Query: 212 DVERTKLDQELES--------------------------LTYG------------LVSSS 233
             E  +++ E++                           L  G               + 
Sbjct: 103 LRETNRIEAEIKEFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNL 162

Query: 234 RCLEKLKTWLFLETGLHLEDLTETT-----CQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
               ++   L           T++      C   L++     P+A++             
Sbjct: 163 GSPVQVNKRL-DRLDWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGLKAWKVLETRWK 221

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           L    L ++    GR+ G +   GA  T R +       N+P  S  H +   +      
Sbjct: 222 LAQEWLQKS-QETGRVHGRVILTGAV-THRAAHQGPNMANIP--SVPHGKDGILWKMEGM 277

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                           R      EGK LV  D AGI+ RVLA    +    +    G D+
Sbjct: 278 Y-----------GAECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDPIYTEQVIDG-DI 325

Query: 409 YVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +       FN     +  KD R   K    A     G      +        N  
Sbjct: 326 HT------FNKEALGRFCKD-RPTAKTFIYAFLLGAGTGMIASILGCNNRQANEA 373


>gi|157866402|ref|XP_001681907.1| mitochondrial DNA polymerase I protein D [Leishmania major strain
            Friedlin]
 gi|68125206|emb|CAJ03183.1| putative mitochondrial DNA polymerase I protein D [Leishmania major
            strain Friedlin]
          Length = 1577

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 20/153 (13%)

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIEA 386
             S  H EL    T+     +++P+   I  +    +R   I+  G K   + AD + +E 
Sbjct: 1241 DSCIHHELIHNKTNTGRLASANPNCQNIPKEDKSSLRDMFISRFGDKGMCIEADYSQLEV 1300

Query: 387  RVLAWMAGEQWKLKAFETGEDLY--VTT-------YARSFNVAPAQVTKD---QRAIGKV 434
              LA +A ++  L+      D +    T       Y      A      +    R   K+
Sbjct: 1301 VALAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRAKKIKEPEFVKLRQQAKI 1360

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  Y  G    + ++ +TGL  +    L++
Sbjct: 1361 FSFQRQYGAGV---RMLSQSTGLTQDQVRMLIE 1390


>gi|47934738|gb|AAT39807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 77/238 (32%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V ++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR--VAQIG 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|150404365|gb|ABR68496.1| DNA polymerase I [Lactobacillus casei]
 gi|150404409|gb|ABR68518.1| DNA polymerase I [Lactobacillus casei]
 gi|150404423|gb|ABR68525.1| DNA polymerase I [Lactobacillus casei]
 gi|150404433|gb|ABR68530.1| DNA polymerase I [Lactobacillus casei]
 gi|150404437|gb|ABR68532.1| DNA polymerase I [Lactobacillus casei]
 gi|225349774|gb|ACN87812.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 77/254 (30%), Gaps = 37/254 (14%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLPS---- 107
              L    V     ++  + TV     N+       + +      ++LA     P     
Sbjct: 2   ITLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSN 61

Query: 108 ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE----- 159
            L  + E      L   +   GK                 R  P   + +  F       
Sbjct: 62  DLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLFGQFARKSNAL 107

Query: 160 YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +    D+T   E   + +  +  E  L  +   +  +G  ++      +          L
Sbjct: 108 FALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKIL 167

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQ 275
           ++++ +   G+  +    ++L   LF +  L +   T+T       VL+  K  +P    
Sbjct: 168 EEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQD 226

Query: 276 VFNNRMRASRSAVL 289
           + + R  A  ++  
Sbjct: 227 ILDYRGWAKLNSTY 240


>gi|254388656|ref|ZP_05003889.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197702376|gb|EDY48188.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 562

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             Q+  R  R                T     LQ I   +R  V+A  G +LVVAD+  +
Sbjct: 270 WLQDWVRDGRFRPAYQPGGAVSGRWTTLGGGALQ-IPKVIRRAVVADAGWRLVVADVDQM 328

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +   ++     +DLY     R+F           R   K+  L   Y   
Sbjct: 329 EPRVLAAVSRDPGLMEVAAHEDDLYTRLSDRAF--------SGDREQAKLALLGAVYGQT 380

Query: 445 AKAFQKMASTTGLNLNTFAHLVK 467
           +    K  +            V 
Sbjct: 381 SGDGLKNLAALRRRFPAAVAYVD 403


>gi|294813269|ref|ZP_06771912.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|326441791|ref|ZP_08216525.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325868|gb|EFG07511.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 571

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             Q+  R  R                T     LQ I   +R  V+A  G +LVVAD+  +
Sbjct: 279 WLQDWVRDGRFRPAYQPGGAVSGRWTTLGGGALQ-IPKVIRRAVVADAGWRLVVADVDQM 337

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA ++ +   ++     +DLY     R+F           R   K+  L   Y   
Sbjct: 338 EPRVLAAVSRDPGLMEVAAHEDDLYTRLSDRAF--------SGDREQAKLALLGAVYGQT 389

Query: 445 AKAFQKMASTTGLNLNTFAHLVK 467
           +    K  +            V 
Sbjct: 390 SGDGLKNLAALRRRFPAAVAYVD 412


>gi|154334068|ref|XP_001563289.1| mitochondrial DNA polymerase I protein D [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060301|emb|CAM45712.1| putative mitochondrial DNA polymerase I protein D [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1578

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 24/155 (15%)

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGKK--LVVADLAGIEA 386
             S  H EL    T+     +++P+   I  +    +R   I+  G K   + AD + +E 
Sbjct: 1242 DSCIHHELIHNKTNTGRLASANPNCQNIPKEDKSSLRDMFISRFGDKGMCIEADYSQLEV 1301

Query: 387  RVLAWMAGEQWKLKAFETGEDLYVTTYARS--------------FNVAPAQVTKDQRAIG 432
              LA +A ++  L+      D +                      N     V    R   
Sbjct: 1302 VALAVLASDEQMLEDLRQNVDFHCKRVTMMRPDLKYTDVLQRAKKNKELEFVK--LRQQA 1359

Query: 433  KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            K+      Y  G    + ++ +TGL  +    L++
Sbjct: 1360 KIFSFQRQYGAGV---RMLSQSTGLTQDQVRMLIE 1391


>gi|291335495|gb|ADD95107.1| 5B protein [uncultured phage MedDCM-OCT-S04-C348]
          Length = 429

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 94/313 (30%), Gaps = 64/313 (20%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTIND-RGYCVDVALAHTLNQIVDVERTKLDQELES 224
             TR   K +      E E W+  +  N  RGY           +               
Sbjct: 5   IKTRARKKLVSLFPPIEHEEWFTPKVNNANRGYVKGQPFCKKRIE--------------- 49

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLT-PQAIQVFNNRMR 282
                V +    +++   L  + G   E  T+     +     +KL  P+A  +    + 
Sbjct: 50  -----VFNPGSRQQIVDRLKKKYGWVPESKTDKGNPVLNDDVLEKLPYPEAKPLAEYMLL 104

Query: 283 ASRSAVLKL--NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             R   +K   N  ++ ++ DG + G +   G   TGR S        +P     +    
Sbjct: 105 KKRLGQIKDGNNAWIKLVSPDGYIHGDMVTNGCI-TGRCSHRNPNTAQIPAGYSPY---- 159

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGE 395
                                   RS   A +   L+ +D   +E R LA     W  GE
Sbjct: 160 --------------------GKECRSLFHAPDDWILIGSDAKALELRCLAGYLAFWDGGE 199

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             ++   +   D++       F V       + R I K +  A+ Y  G      +    
Sbjct: 200 YGQM-VTDDSVDIHTYN-QEKFGV-------ETRDISKRLLYAVLYGAGFYKAGTIVDPD 250

Query: 456 GLNLNTFAHLVKT 468
             + +    L KT
Sbjct: 251 EKDPDILKQLGKT 263


>gi|47934742|gb|AAT39809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 78/238 (32%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVRDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC     G +LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDGGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|225349766|gb|ACN87808.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 37/252 (14%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLPS----AL 109
            L    V     ++  + TV     N+       + +      ++LA     P      L
Sbjct: 4   LLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDL 63

Query: 110 KAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----YC 161
             + E      L   +   GK                 R  P   + +  F       + 
Sbjct: 64  GKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLFGQFARKSDALFA 109

Query: 162 KG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              D+T   E  ++ +  +  E  L  +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLEKQEQTDLFTDMEPTLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277
           ++ +   G+  +    ++L   LF +  L +   T+T       VL+  K  +P    + 
Sbjct: 170 KIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVL 289
           + R  A  ++  
Sbjct: 229 DYRGWAKLNSTY 240


>gi|313631118|gb|EFR98659.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 56

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
               G+   Y   T +   ++YTYGGKL ENIVQA++RD LA  +     AG
Sbjct: 2   PGKYGHQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAVSLRRIEDAG 53


>gi|150404373|gb|ABR68500.1| DNA polymerase I [Lactobacillus casei]
 gi|150404375|gb|ABR68501.1| DNA polymerase I [Lactobacillus casei]
 gi|150404377|gb|ABR68502.1| DNA polymerase I [Lactobacillus casei]
 gi|150404381|gb|ABR68504.1| DNA polymerase I [Lactobacillus casei]
 gi|150404417|gb|ABR68522.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 37/252 (14%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLPS----AL 109
            L    V     ++  + TV     N+       + +      ++LA     P      L
Sbjct: 4   LLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDL 63

Query: 110 KAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----YC 161
             + E      L   +   GK                 R  P   + +  F       + 
Sbjct: 64  GKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLFGQFARKSNALFA 109

Query: 162 KG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              D+T   E   + +  +  E  L  +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277
           ++ +   G+  +    ++L   LF +  L +   T+T       VL+  K  +P    + 
Sbjct: 170 KIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVL 289
           + R  A  ++  
Sbjct: 229 DYRGWAKLNSTY 240


>gi|291301867|ref|YP_003513145.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
 gi|290571087|gb|ADD44052.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
          Length = 548

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 76/287 (26%), Gaps = 57/287 (19%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    +    +++    F + G  +E       + +        P    +   +  +   
Sbjct: 213 FDHPFNPDSPQQVLA-AFRKAGHPIETTRAWELKTI------DHPAVPPLLRYKELS--- 262

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                           R+       G +    W G      + P   R            
Sbjct: 263 ----------------RVHSA---HGWNWLSEWVGDGPGGPDSPAK-RFRPRYVVGGVVT 302

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
               T     LQ I   +R+   A  G KLVVAD A +E R+LA M+ +   + A    +
Sbjct: 303 GRWATDGGAALQ-IPKVIRAAATADAGHKLVVADAAQLEPRMLAAMSQDPGMIAA-AEAD 360

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D+Y                   R   K+  L+  Y G A     + +             
Sbjct: 361 DMYAALAPTFDG---------SRDDAKIALLSAMYGGTAGNATALLTVM----------- 400

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                   +  A  +      +  +  +   ++G         W   
Sbjct: 401 -----RRRFPTAYAYVEQAARDGEKGGLVRTWLGRTSPAPGDGWWNA 442


>gi|47934690|gb|AAT39783.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934692|gb|AAT39784.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934700|gb|AAT39788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934702|gb|AAT39789.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 48/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCLEKLKTWLFL---- 245
              G+ +DV  A  L+  +      ++ E++ +   +V    S +  ++LK  +      
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 246 ----------ETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293
                     E G   +  TET   +V  +  +    P+A  +    M   R  V  +++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILESIDLPEAQLIAEYLMIQKR--VGLIDS 118

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            ++ ++    R+ G +  LG + TGR +        +P                     +
Sbjct: 119 WLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------SVA 158

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     +G +L+  DL+GIE R LA    +    +    G D++ 
Sbjct: 159 KPY-----GKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|47934750|gb|AAT39813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 79/238 (33%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +    ++ TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVI-TNSAVTGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG +LV  D +G+E R+LA    ++        G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|150404371|gb|ABR68499.1| DNA polymerase I [Lactobacillus casei]
 gi|150404379|gb|ABR68503.1| DNA polymerase I [Lactobacillus casei]
 gi|225349754|gb|ACN87802.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 37/252 (14%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLPS----AL 109
            L    V     ++  + TV     N+       + +      ++LA     P      L
Sbjct: 4   LLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDL 63

Query: 110 KAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----YC 161
             + E      L   +   GK                 R  P   + +  F       + 
Sbjct: 64  GKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLFGQFARKSDALFA 109

Query: 162 KG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              D+T   E   + +  +  E  L  +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277
           ++ +   G+  +    ++L   LF +  L +   T+T       VL+  K  +P    + 
Sbjct: 170 KIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVL 289
           + R  A  ++  
Sbjct: 229 DYRGWAKLNSTY 240


>gi|86171563|ref|XP_966236.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
 gi|46361202|emb|CAG25066.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
          Length = 1444

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 40/234 (17%)

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  + +     +  L + +  +  ++      +GAS TGR S      QN+      
Sbjct: 1016 IKLYRESKKLVQNYIENLPKYIQKNTNKIHCNFNQIGAS-TGRLSCDQPNLQNI------ 1068

Query: 336  HEELDQIITHLPTS------------------ITSDPDPLQIISDCVRSCVIA---SEGK 374
            H      I+                       I+++      +   + S          K
Sbjct: 1069 HSRFRCAISLKGKEENDTHDNNNNNNNIPQIHISTNNVSTNNVPMNIMSSTYPLYTMNKK 1128

Query: 375  KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             L+  D   +E  V+A+++ ++  LK      D+++ T    FN     VT + R + K 
Sbjct: 1129 NLITFDYKQMELFVMAYLSFDEQLLKLL-NYSDVFIETAKVLFNT--NDVTNELRRMTKT 1185

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
            +   + Y         +A +  ++    ++L++       ++   N  R+MQ  
Sbjct: 1186 VIYGILYGQTEN---GLAKSLLISDTLASNLIE-----NFFQFFPNVYRFMQMQ 1231


>gi|262342093|gb|ACY54557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    A+ G+ +V ADL+GIE R+LA      ++ +  +     D++ 
Sbjct: 1   PNLAQVPSDANFRKLFTATPGQVMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGDS---KLGRSYDPQLSEQQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA 131


>gi|47934672|gb|AAT39774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934674|gb|AAT39775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934676|gb|AAT39776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934678|gb|AAT39777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934680|gb|AAT39778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934686|gb|AAT39781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934694|gb|AAT39785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 48/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCLEKLKTWLFL---- 245
              G+ +DV  A  L+  +      ++ E++ +   +V    S +  ++LK  +      
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 246 ----------ETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293
                     E G   +  TET   +V  +  +    P+A  +    M   R  V  +++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR--VGLIDS 118

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            ++ ++    R+ G +  LG + TGR +        +P                     +
Sbjct: 119 WLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------SVA 158

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     +G +L+  DL+GIE R LA    +    +    G D++ 
Sbjct: 159 KPY-----GKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|330469036|ref|YP_004406779.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
 gi|328812007|gb|AEB46179.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
          Length = 548

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 52/153 (33%), Gaps = 11/153 (7%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R   E            T     LQ I   +R   +A  G + VVAD   +E RVLA
Sbjct: 277 RDGRFQPEYVPGGVVSGRWATRGGGALQ-IPKVIRRAAMADPGWRFVVADAGQLEPRVLA 335

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG-GAKAFQ 449
            ++G+     A  TG DLY      +F           R   K+  L   Y   G +A  
Sbjct: 336 AVSGDARLAAAGATG-DLYQALARDAFGGD--------RGRAKLALLGAMYGQTGGEAVP 386

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            +A   G     F ++       E      ++ 
Sbjct: 387 ALAGVRGNYPTAFGYVEAAARTGEAGGLVRSWL 419


>gi|47934682|gb|AAT39779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 85/238 (35%), Gaps = 48/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCLEKLKTWLFL---- 245
              G+ +DV  A  L+  +      ++ E++     +V    S +  ++LK  +      
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEAFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 246 ----------ETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293
                     E G   +  TET   +V  +  +    P+A  +    M   R  V  +++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR--VGLIDS 118

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            ++ ++    R+ G +  LG + TGR +        +P  ++ +                
Sbjct: 119 WLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVPSVAKPY---------------- 161

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       RS     +G +L+  DL+GIE R LA    +    +    G D++ 
Sbjct: 162 --------GKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|229472291|gb|ACQ72660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +  +     D++ 
Sbjct: 1   PNLAQVPSDAEFRKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGKSYDAQLSESQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA      +       A E  FI   C+  +      H  +
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINL-CDGRRCTVDGAHKAL 153


>gi|47934762|gb|AAT39819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 77/238 (32%), Gaps = 49/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RSC    EG  LV  D +G+E R+LA    +         G D++ 
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDGDYTNEILNG-DIHT 209


>gi|262212355|gb|ACY35794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    A+ G+ +V ADL+GIE R+LA      ++ +  +     D++ 
Sbjct: 1   PNLAQVPSDANFRKLFTATPGQVMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVIYAFLYGAGDS---KLGRSYDPQLSEQQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA 131


>gi|156390270|ref|XP_001635194.1| predicted protein [Nematostella vectensis]
 gi|156222285|gb|EDO43131.1| predicted protein [Nematostella vectensis]
          Length = 203

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 73/185 (39%), Gaps = 12/185 (6%)

Query: 380 DLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
           D   IE R+LA ++ +   L+ F   T  D++    ++   V P +V   +R   K +  
Sbjct: 1   DFQSIELRLLANLSDDPDLLRVFNDSTSIDIFTKLTSQWLGVPPVKVDFKERERTKRIVY 60

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
           ++ Y  G    +++ +T  +  N     +++      +     F R   E+   +     
Sbjct: 61  SVIYGVG---RERLGNTLCVEPNEAKGFMESFLGK--FPGINEFSRKCIEDCNTNG---- 111

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
           F+ T  +R K+      SR  ++ ++  +     +  G A    K   + +V+  +   +
Sbjct: 112 FVSTIFKR-KRWIPHIKSRDFQIRSQAERQAVNFVVQGSAADLCKSAMIQIVHALEKDVS 170

Query: 558 LILML 562
           L   L
Sbjct: 171 LKARL 175



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVCETPDTD 640
           +    +VQ  + D+    M+    A          ++L +HDE++ E  DTD
Sbjct: 140 QAVNFVVQGSAADLCKSAMIQIVHALEKDVSLKARLLLQIHDELLLEVADTD 191


>gi|229472211|gb|ACQ72620.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +  +     D++ 
Sbjct: 1   PNLAQVPSDAEFRKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L       K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGKSYDAQLTESQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA      +       A E  FI   C+  + +    H  +
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINL-CDGRRCSVDGAHKAL 153


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1417

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 87/276 (31%), Gaps = 52/276 (18%)

Query: 254  LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL----VEAMNSDGRLRGTLQ 309
             ++   +  L    +       +   + +  R+A   L++     +  ++SDG++R  + 
Sbjct: 1025 RSKPINENTLQVLHRNQVTVAGLLLQKQQLERNAARFLHSDPSGRLSVLHSDGKVRQLID 1084

Query: 310  FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
                S +   S      QN+P+  +S                            +R   +
Sbjct: 1085 LTATSTSRTTSSYPS-CQNIPKDDKSP---------------------------IRRLFV 1116

Query: 370  ASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK- 426
            +  G+K   V  D + +E  VLA + G+   +     G D ++   +    +   ++ K 
Sbjct: 1117 SRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYKG 1176

Query: 427  ---------DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                       R   K       Y  G         TTG+ +      ++     EE+  
Sbjct: 1177 YKRGIPEYVQLRRTAKTFSFQRLYGAGVPLLH---KTTGIPVEDLEASIRKEE--EEYPG 1231

Query: 478  AENFCRWMQE---NHPEHAIEDLFIGTACERVKKAW 510
               F R ++          +   F+      ++ ++
Sbjct: 1232 IMQFHRLVRTVALRAENPGLPTHFVVELPTGIRMSF 1267


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1473

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 87/276 (31%), Gaps = 52/276 (18%)

Query: 254  LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL----VEAMNSDGRLRGTLQ 309
             ++   +  L    +       +   + +  R+A   L++     +  ++SDG++R  + 
Sbjct: 1081 RSKPINENTLQVLHRNQVTVAGLLLQKQQLERNAARFLHSDPSGRLSVLHSDGKVRQLID 1140

Query: 310  FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
                S +   S      QN+P+  +S                            +R   +
Sbjct: 1141 LTATSTSRTTSSYPS-CQNIPKDDKSP---------------------------IRRLFV 1172

Query: 370  ASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK- 426
            +  G+K   V  D + +E  VLA + G+   +     G D ++   +    +   ++ K 
Sbjct: 1173 SRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYKG 1232

Query: 427  ---------DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                       R   K       Y  G         TTG+ +      ++     EE+  
Sbjct: 1233 YKRGIPEYVQLRRTAKTFSFQRLYGAGVPLLH---KTTGIPVEDLEASIRKEE--EEYPG 1287

Query: 478  AENFCRWMQE---NHPEHAIEDLFIGTACERVKKAW 510
               F R ++          +   F+      ++ ++
Sbjct: 1288 IMQFHRLVRTVALRAENPGLPTHFVVELPTGIRMSF 1323


>gi|47934712|gb|AAT39794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 84/240 (35%), Gaps = 53/240 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV+ A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDVSYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +  P+A  V    M   R  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDR--PEAKAVARYMMLQKR--VAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +                              
Sbjct: 116 IDSWLKAVKDDGRVHGRVITNGAV-TGRMTHQSPNM------------------------ 150

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              P          RSC    EG  LV  D +G+E R+LA    ++        G D++ 
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLARYMDDEDYTNEILNG-DIHT 209


>gi|229472431|gb|ACQ72730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +  +     D++ 
Sbjct: 1   PNLAQVPSDAEFRRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGKSYDAQLSESQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA      +       A E  FI   C+  +      H  +
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINL-CDGRRCTVDGAHKAL 153


>gi|167565000|ref|ZP_02357916.1| DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 619

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 149/488 (30%), Gaps = 104/488 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------QVLKEA 60
           D  T    DL   G+ +  E   + + A G     V      HDP  P      + L   
Sbjct: 7   DILTW---DLETDGLLR--ELTRIWVLAIGTVGSDVITTYTDHDPNYPPLMEGVERLMAH 61

Query: 61  LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           +     T  AHN   F+R  L      ++P    + TLV+ R    P  L       KL 
Sbjct: 62  VARGGKTA-AHNGINFDRKALAKVTGYEMPYTAILDTLVMGR-LAEPERLGG----HKLE 115

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE----YCKGDVTVTREIFKRL 175
           S  +E G                           W  + E    YC+ D+ VT  ++K+L
Sbjct: 116 SYGIEMG-------------------ILKGSHNEWDRYSEEMRSYCEQDIAVTNALYKKL 156

Query: 176 EPLSSKEQELWYLDQTINDR-GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           E +     + W     +     Y +D+ + +    +   E   L  +L     G ++   
Sbjct: 157 ERV-----QTWGESCDLEHTVAYLIDLQMTNGF-PLNMREAMTLAAQLWERRDGYLA--- 207

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN--------NRMRASR- 285
            ++++   +++  G      T     R  ++    T   +Q FN        NR++    
Sbjct: 208 EMQRVFPPIYVSAGAVTPKRTMKREGREYTAGAPYTKIVLQEFNPGSEYHVANRLKRKYG 267

Query: 286 --------------SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF-PPQNLP 330
                          AVLK     E        R   Q+   +   + +G       +  
Sbjct: 268 WRAPLTEKGNPNITEAVLKKLDFPEVQPLLHFARVDKQWTQLASPPKKNGTGGGWIHHAD 327

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              R H  ++           S P+    I   +R   I S G K V  D  G+E RVLA
Sbjct: 328 ENHRVHGYVNSNGAVTGRMTHSRPNS-ANIDKEMRHIWIPSMGMKQVGCDAEGLELRVLA 386

Query: 391 W--------------MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                          + G++        G D +         V         R   K + 
Sbjct: 387 HYLARYDGGRLTRQLLDGDKAL------GTDAHS--------VNRDNTDLFSRDGAKTLL 432

Query: 437 LALGYQGG 444
               Y  G
Sbjct: 433 YGSLYGAG 440


>gi|229472289|gb|ACQ72659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGKSYDAQLSESQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA      +       A E  FI   C+  +      H  +
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINL-CDGRRCTVDGAHKAL 153


>gi|229472607|gb|ACQ72818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGKSYDAQLSESQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA      +       A E  FI   C+  + +    H  +
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINL-CDGRRCSVDGAHKAL 153


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1404

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 87/276 (31%), Gaps = 52/276 (18%)

Query: 254  LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL----VEAMNSDGRLRGTLQ 309
             ++   +  L    +       +   + +  R+A   L++     +  ++SDG++R  + 
Sbjct: 1012 RSKPINENTLQVLHRNQVTVAGLLLQKQQLERNAARFLHSDPSGRLSVLHSDGKVRQLID 1071

Query: 310  FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
                S +   S      QN+P+  +S                            +R   +
Sbjct: 1072 LTATSTSRTTSSYPS-CQNIPKDDKSP---------------------------IRRLFV 1103

Query: 370  ASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK- 426
            +  G+K   V  D + +E  VLA + G+   +     G D ++   +    +   ++ K 
Sbjct: 1104 SRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYKG 1163

Query: 427  ---------DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                       R   K       Y  G         TTG+ +      ++     EE+  
Sbjct: 1164 YKRGIPEYVQLRRTAKTFSFQRLYGAGVPLLH---KTTGIPVEDLEASIRKEE--EEYPG 1218

Query: 478  AENFCRWMQE---NHPEHAIEDLFIGTACERVKKAW 510
               F R ++          +   F+      ++ ++
Sbjct: 1219 IMQFHRLVRTVALRAENPGLPTHFVVELPTGIRISF 1254


>gi|150404367|gb|ABR68497.1| DNA polymerase I [Lactobacillus casei]
 gi|150404369|gb|ABR68498.1| DNA polymerase I [Lactobacillus casei]
 gi|150404385|gb|ABR68506.1| DNA polymerase I [Lactobacillus casei]
 gi|150404393|gb|ABR68510.1| DNA polymerase I [Lactobacillus casei]
 gi|150404395|gb|ABR68511.1| DNA polymerase I [Lactobacillus casei]
 gi|150404435|gb|ABR68531.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 78/247 (31%), Gaps = 27/247 (10%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLPS--ALKA 111
            L    V     ++  + TV     N+       + +      ++LA     P   +   
Sbjct: 4   LLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDL 63

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----YCKG-DV 165
              A       +   +++  +  K         R  P   + +  F       +    D+
Sbjct: 64  GKIAEDHDYHDLPRDEDIYDKGAK---------RQVPEDDKLFGQFARKSNALFALRPDL 114

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           T   E   + +  +  E  L  +   +  +G  ++      +          L++++ + 
Sbjct: 115 TGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAE 174

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282
             G+  +    ++L   LF +  L +   T+T       VL+  K  +P    + + R  
Sbjct: 175 A-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGW 233

Query: 283 ASRSAVL 289
           A  ++  
Sbjct: 234 AKLNSTY 240


>gi|229472219|gb|ACQ72624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGKSYDAQLSESQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA      +       A E  FI   C+  +      H  +
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINL-CDGRRCTVDGAHKAL 153


>gi|150404389|gb|ABR68508.1| DNA polymerase I [Lactobacillus casei]
 gi|225349760|gb|ACN87805.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 77/252 (30%), Gaps = 37/252 (14%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLPS----AL 109
            L    V     ++  + TV     N+       + +      ++LA     P      L
Sbjct: 4   LLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDL 63

Query: 110 KAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----YC 161
             + E      L   +   GK                 R  P   + +  F       + 
Sbjct: 64  GKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLFGQFARKSDALFA 109

Query: 162 KG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              D+T   +   + +  +  E  L  +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLKKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKALKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277
           ++ +   G+  +    ++L   LF +  L +   T+T       VL+  K  +P    + 
Sbjct: 170 KIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVL 289
           + R  A  ++  
Sbjct: 229 DYRGWAKLNSTY 240


>gi|229472459|gb|ACQ72744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGKSYDAQLSEQQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA      +       A E  FI   C+  +      H  +
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINL-CDGRRCTVDGAHKAL 153


>gi|85708302|ref|ZP_01039368.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
 gi|85689836|gb|EAQ29839.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
          Length = 515

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 88/298 (29%), Gaps = 51/298 (17%)

Query: 182 EQELWYLDQTINDRGYCVDVA-LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
           E   + L Q     G  +D + L+    Q        L     +    + +      ++K
Sbjct: 157 EVPAYRLLQLSMSAGISIDTSGLSEKRGQAEHDYFVFLKDYSANHDMPIETP--SRRRIK 214

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             L  E G  L+ ++       +  ++      + +            L L+T       
Sbjct: 215 AKLLQE-GFELDGVSVDYILEFVPHDRDFGDDTLTLLALDAARKVLGSLTLSTNTT---- 269

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
               R  +   G SRT R        QN+P+                             
Sbjct: 270 ----RPLVDVFG-SRTSRVQIRSPNLQNIPKKY--------------------------- 297

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               RS + + +  +L   D    E  ++A ++G++   + +  G D+Y         + 
Sbjct: 298 ----RSIINSRDDAQLCYVDFDQFEVGIMAALSGDEMLKELYAAG-DMYELFATTQLGLV 352

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
                 D R   K + L+  Y    KA    A + G+         +     E+W+  
Sbjct: 353 ------DNRKAAKQLFLSYAYGMSRKALVDAAVSLGVERQKAKKAFRQFRGYEDWKRT 404


>gi|229472359|gb|ACQ72694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGKSYDAQLSEQQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA      +       A E  FI   C+  +      H  +
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINL-CDGRRCTVDGAHKAL 153


>gi|229472209|gb|ACQ72619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472325|gb|ACQ72677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472333|gb|ACQ72681.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472437|gb|ACQ72733.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L       K   
Sbjct: 61  ENADKI---------GISRRAVKTVTYAFLYGAGD---AKLGKSYDAQLTESQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA      +       A E  FI   C+  + +    H  +
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINL-CDGRRCSVDGAHKAL 153


>gi|307105222|gb|EFN53472.1| hypothetical protein CHLNCDRAFT_136747 [Chlorella variabilis]
          Length = 911

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 37/223 (16%)

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           L   +   G   D  L     ++     +++++E   L  G   +    ++L   L+   
Sbjct: 679 LLAQMEGAGLGFDPWLLREAGRVARSHMSRIEEECAELA-GRPFNPASPQQLAEVLYSVL 737

Query: 248 GLHLE-----DLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            L           +T   T ++ L + + L+P    V   R      +   +        
Sbjct: 738 KLPPPTGRGRSSAKTHLRTDEQALEALRPLSPLPGLVLEYR-ALQNFSSKWVEADWCRAA 796

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           + G      +   A    R  G  +P        R H    Q  T      +S P+    
Sbjct: 797 AAG-----FESADAYAAARPGGGGWP--------RVHCCWHQTSTATGRLSSSAPNLQ-- 841

Query: 360 ISDCVRSC-------VIASEGKKLVVADLAGIEARVLAWMAGE 395
                R         V+    + LV  D   ++    AW+A E
Sbjct: 842 --ARSRMAAAGGAVLVVHLHDELLVEVDARQVDG---AWVAQE 879


>gi|227545493|ref|ZP_03975542.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227184527|gb|EEI64598.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 101

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
            A +          + + WR     + + W ++ +A ++ I   K  + +    +  +Y 
Sbjct: 10  GATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECI---KTHLPQTTHGMKFIY- 65

Query: 552 KKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT 584
                 + L L SGR L Y    +G NR    + T
Sbjct: 66  --RSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 98


>gi|47934684|gb|AAT39780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 48/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCLEKLKTWLFL---- 245
              G+ +DV  A  L+  +      ++ E++ +   +V    S +  ++LK  +      
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 246 ----------ETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293
                     E G   +  TET   +V  +  +    P+A  +    M   R  V  +++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR--VGLIDS 118

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            ++ ++    R+ G +  LG + TGR +        +P                     +
Sbjct: 119 WLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVP-------------------SVA 158

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     +G +L+  DL+GIE R LA    +    +    G D++ 
Sbjct: 159 KPY-----GKECRSLFTVEDGNRLIGCDLSGIELRCLAHHMQDPEWQEELLNG-DIHT 210


>gi|323359890|ref|YP_004226286.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276261|dbj|BAJ76406.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 499

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 54/186 (29%), Gaps = 26/186 (13%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R                +S    LQ I   +R  V A  G  LV AD+A +E RVLA
Sbjct: 210 RDGRFRPVYVPAGVVTGRWASSGGGALQ-IPRQLRVAVRADPGWTLVTADVAQLEPRVLA 268

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            MA +     A     DLY         V    V    RA  K+  L   Y        +
Sbjct: 269 AMARDTALADAARR-RDLYSGV------VEAGAVA--TRAEAKIAMLGAMYGATTGESGR 319

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +                       +  A            E  +   ++G       +AW
Sbjct: 320 L----------------LPRLRRTFPRAMALVDHAARVGEEGGVVSTWLGRTSPGPGEAW 363

Query: 511 RQKHSR 516
           R   SR
Sbjct: 364 RAVQSR 369


>gi|26988997|ref|NP_744422.1| DNA polymerase [Pseudomonas putida KT2440]
 gi|24983817|gb|AAN67886.1|AE016420_8 DNA polymerase [Pseudomonas putida KT2440]
          Length = 695

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 87/310 (28%), Gaps = 59/310 (19%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLTPQAIQVFNNRMRASRSA 287
           +  +    + +   L    G   E  T+    +V      KL+    ++    +  ++  
Sbjct: 309 VEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLSYPPCKLLTEYLLVAKRI 368

Query: 288 VLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                       +   GR+ G++   GA                                
Sbjct: 369 SQLAEGKQAWMLVEKQGRIHGSVNPNGA-------------------------------A 397

Query: 346 LPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQW 397
              +  + P+  Q+           R       G  LV AD +G+E R LA      +  
Sbjct: 398 TGRATHAYPNVAQVPASGSPYGKDCRELFTVPLGWLLVGADASGLELRCLAHFMARYDGG 457

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQ------VTKDQRAIGKVMELALGYQGG------- 444
           K        D++     ++  +   +      + K  R   K    A  Y  G       
Sbjct: 458 KYVDILLNGDIHWAN-VQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVGTI 516

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                  A   GL+   + HL+      ++  D E      ++       +   +    +
Sbjct: 517 VFGMVAKAKALGLD---YQHLLDVFFNGQDNPDEEALKAAGKKLKATFLRKTPALKKLVK 573

Query: 505 RVKKAWRQKH 514
            VK+A ++ H
Sbjct: 574 AVKEAAKRGH 583


>gi|32442313|gb|AAP82227.1| DNA polymerase [Podovirus GOM]
          Length = 404

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 123/426 (28%), Gaps = 64/426 (15%)

Query: 76  ERTVLKACFNLDIPIHRWIC--TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
           +  VL   F  D+    +      + A   G   +L+A G   +L   K E GK L   +
Sbjct: 1   DTLVLSRLFFTDLLDRDFRSRPANMPANLYGR-HSLEAWG--HRLGVHKSEFGKSLDGDW 57

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------EQELW 186
                    Y                 C+ DV V+ ++ +  E            E  + 
Sbjct: 58  STYTPEMGAY-----------------CQQDVVVSVKVAQLFESKLETHSDCIDTEHRIA 100

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES----LTYGLVSSSRCLEKLKTW 242
            +       G+  DV  A  L   +  E   + +E+ S    +  G  +  R        
Sbjct: 101 DVMAWQERVGFPFDVDKAQQLESKLRTELDAISEEMRSTFAFVDGGCFTPKRS------- 153

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
                G  +E       +    +++     A + F N     R+A  +       +   G
Sbjct: 154 -NGPRGY-VEGAAMCKLKEFSPTSRDHIAWAFETFRNWEPKERTASGRAKIDDSVLKEIG 211

Query: 303 -----RLRGTLQFLGASRTGRWS-GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                +    L+       G+ S G     Q      + H     + T+        P+ 
Sbjct: 212 SPEALKFARILELQK--HLGQLSEGKNAWLQQE-VNGKIHHSCI-LNTNTGRMAHLRPNL 267

Query: 357 LQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTY 413
            Q  S    R+       +  V AD +G+E R LA      +  K        D++    
Sbjct: 268 AQAPSAPEYRALFHPGTNRLQVGADASGLELRCLAHYLAPFDGGKFAESVVHGDIHTDLA 327

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           A  +           R  GK +   L Y GG       A  +          ++     +
Sbjct: 328 A-IYGTD--------RKSGKGVTYCLIYGGGDTKLGLTAGASKAQAAKKGKEIRGRIMRD 378

Query: 474 EWEDAE 479
               AE
Sbjct: 379 LAGFAE 384


>gi|262212409|gb|ACY35821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L       K   
Sbjct: 61  ENADKI---------GISRRAVKTVTYAFLYGAGD---AKLGKSYDAQLTESQTKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA      +       A E  FI     R
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCGGR 142


>gi|262212373|gb|ACY35803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    A+ G+ +V ADL+GIE R+LA      ++ +  +     D++ 
Sbjct: 1   PNLAQVPSDANFRKLFTATPGQVMVGADLSGIELRMLAHYLARYDEGRYASILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K   +    L+      K   
Sbjct: 61  ENADKI---------GISRRQVKTVIYAFLYGAGDS---KPGRSYDPQLSEQQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA 131


>gi|229472265|gb|ACQ72647.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADL+GIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLNFRRLFCASPGHIMVGADLSGIELRMLAHYLARYDDGRYGDILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    Q++  +   +L       K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---QRIGESYDQSLPPDKAKQKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      + E   + A
Sbjct: 109 IRQAYMDAIPGLEKLVEATKKAA 131


>gi|229472613|gb|ACQ72821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADL+GIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLNFRRLFCASPGHIMVGADLSGIELRMLAHYLARYDDGRYGDILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    Q++  +   +L       K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYASLYGAGD---QRIGESYDQSLPPDKAKQKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      + E   + A
Sbjct: 109 IRQAYMDAIPGLEKLVEATKKAA 131


>gi|47934696|gb|AAT39786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 86/238 (36%), Gaps = 48/238 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCLEKLKTWLFL---- 245
              G+ +DV  A  L+  +      ++ E++ +   +V    S +  ++LK  +      
Sbjct: 1   ERNGFKLDVPEAQILHATLIDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 246 ----------ETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293
                     E G   +  TET   +V  +  +    P+A  +    M   R  V  +++
Sbjct: 61  SRLQIGDRLQELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR--VGLIDS 118

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            ++ ++    R+ G +  LG + TGR +        +P  ++ +                
Sbjct: 119 WLKYVDEKTERVHGGIITLG-TITGRMAHRSPNLGQVPSVAKPY---------------- 161

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       RS     +G +L+  DL+GIE R LA    +    +    G D++ 
Sbjct: 162 --------GKECRSLFTVEDGNRLIGCDLSGIELRRLAHYMQDPEWQEELLNG-DIHT 210


>gi|329114048|ref|ZP_08242812.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696587|gb|EGE48264.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 542

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 93/304 (30%), Gaps = 51/304 (16%)

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDV-ALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           LE   + E   + L Q     G  +D   L+   +Q        L          L +  
Sbjct: 157 LERFFTVEVPAYRLLQLSMSAGISIDTIGLSEKRSQAEHDYFLALKAYSAKHDMPLETP- 215

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
                L++ L LE G  L++++       +  ++      + +    +       L L T
Sbjct: 216 -SRRALESKLVLE-GFELDEVSIEYLLEFVPHDRDFGGDTMALLALDVTRRVLGSLTLAT 273

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
            +         R  +   G SRT R        QN+P+                      
Sbjct: 274 NIT--------RPVVDVFG-SRTSRVQLRSPSLQNIPKRY-------------------- 304

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                      RS + A  G KL   D    E  ++A ++G++   + +  G D+Y    
Sbjct: 305 -----------RSIISARTGAKLCYVDFDQFEVGIMAALSGDEELKRLYAAG-DMYDLFA 352

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                +       + R   K + L+  Y    KA    A + G+         +     E
Sbjct: 353 NTHLGLV------NNRKAAKQLFLSYAYGMSRKALIDAAYSLGVERQKAKEAFRLFQRYE 406

Query: 474 EWED 477
           +W+ 
Sbjct: 407 DWKR 410


>gi|167841478|ref|ZP_02468162.1| 38L [Burkholderia thailandensis MSMB43]
          Length = 787

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 81/236 (34%), Gaps = 33/236 (13%)

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             I+   NR      A+ ++  L + + +       +++    +       +        
Sbjct: 380 DVIEALGNRGIPFLDAMARVQALTKDLGT-----YFIRYDEKKKAHVGMLTLVQL----- 429

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIASEGK--KLVVADLAGIE 385
            S  H  L+   T      +S+P+ LQ +S      V+    +  G+   ++ +D + +E
Sbjct: 430 DSIVHHMLNHTNTVTGRLSSSNPN-LQNLSKGQKSRVKEVFESRWGEDGVIIQSDFSSLE 488

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVT--------TYARSFNVAPAQVTKD---QRAIGKV 434
             V A +   +  ++  ++G+D++          TY   F +       +   +R   KV
Sbjct: 489 VYVQAILTKAEKLIEDLKSGKDMHCVRLAAKEGKTYEEVFELCKIIADPEWDYKRTGAKV 548

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
                 Y  G K     A +TG+ L     L +     E + +   +     E   
Sbjct: 549 FSFQRAYGAGNKTI---AESTGMPLEEVEALAQAE--DERYHEVPAYFEKKTEEIK 599


>gi|239918065|ref|YP_002957623.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|281415754|ref|ZP_06247496.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|239839272|gb|ACS31069.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
          Length = 578

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 68/213 (31%), Gaps = 25/213 (11%)

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
           ++   +R    +G  +  Q +    R H                    +Q+ +  VR  V
Sbjct: 281 EYKALARLWTANGWHWLDQWIGDDGRFHAAYLVGGVVTGRWAAHGGGAMQVPAG-VRDAV 339

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA--RSFNVAPAQVTK 426
            A  G  L VAD + +E R+LA MA ++   +A  T  DLY       R+   A A    
Sbjct: 340 RADPGWTLTVADASQVEPRILAAMAADEVLARAGTT-PDLYREVAEQGRAAGTALAD--- 395

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R   K+  L   Y           STTG +     HL         +  A        
Sbjct: 396 --RGRAKIALLGAMYG----------STTGDSAALMPHL------RRLYPRAIGLLERAA 437

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                      ++G       + W++  S V  
Sbjct: 438 TVGEGGGQVSTWLGRWSPAPGRKWQESVSDVGT 470


>gi|121606814|ref|YP_984143.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595783|gb|ABM39222.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 530

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
           +D   +        DP   Q IS   R  +  +    L   D    E  V+A ++ ++  
Sbjct: 283 IDLFGSITSRIYFKDP-VFQNISKRHRDVICPNGSNLLSYVDYDQFEVGVMAALSEDEIL 341

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L  + +GEDLY +   + F        K+QR   K + L+  Y          A   G+ 
Sbjct: 342 LSLY-SGEDLYESLLEQLFG------EKNQRKFAKRLFLSYAYGMKLNRISDAAHAKGVE 394

Query: 459 LNTFAHLVKTNSAPEEW 475
                   +  +  E+W
Sbjct: 395 RGKVKEFFRKLTTFEKW 411


>gi|256395061|ref|YP_003116625.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
 gi|256361287|gb|ACU74784.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
          Length = 568

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 46/180 (25%), Gaps = 27/180 (15%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              R   E                  LQ I+  +R  VIA  G   V AD A +E R+LA
Sbjct: 296 VDGRFRPEYSVGGVVTGRWAARGGGALQ-IARRLRKAVIADPGWLFVSADAAQLEPRILA 354

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            MA +    +A ++  D+Y       F           R   K+  L   Y         
Sbjct: 355 AMAQDPGMAEATQSD-DMYSALAG-VFE--------GSRDQAKLGLLGAMYGQTGGG--- 401

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                   +  A               +    +G  C    + W
Sbjct: 402 -------------AAAPLALMRRRFPKATALLDDAAREGERGRLVRSQLGRTCPPPSQRW 448


>gi|229472603|gb|ACQ72816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 67.5 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      +   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGKSYDAQLSEQQAKKRGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA 131


>gi|115374272|ref|ZP_01461557.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368693|gb|EAU67643.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 699

 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 102/670 (15%), Positives = 178/670 (26%), Gaps = 133/670 (19%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
            +      Q    A+ N DV +V  N  ++  V+ A  +    I      L   R + + 
Sbjct: 37  LLDKEQARQFFANAISNRDVHLVGANLPYDLGVMAA--DNSWLIESIFDALDAGRLHDVA 94

Query: 107 SALKAVGEALKLSSQKMEEGKEL-------IARFCKGETHECLYDRNKPNHREAWRLFGE 159
           +    +  A  L       G++L              + +  L       +  AWRL   
Sbjct: 95  TREALIDIAKGLHGVDPTTGRKLDDDEGARYPLALLVKRYLGLDISEDKKNPLAWRL--R 152

Query: 160 YCKGD-VTVTREIFKRLEPLSSKEQE----LWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           Y + D V V R       P+ + E       + +D          DV     L+   D  
Sbjct: 153 YGELDGVPVER------WPVEAVEYPKCDARYTIDVFFKQEEQARDVTNGGNLHAEPDQM 206

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKT----------WLFLETGLHLEDLTETTC---QR 261
           R      L S+ +GL ++   + +L+             F   G+   D ++ T      
Sbjct: 207 RAAFVLHLASI-WGLRTNGVAVAELRKRVEAEWQQNRIRFQAAGIFRADGSKDTKRLAAL 265

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           V ++     P              +    L    + +  D    G +    ++       
Sbjct: 266 VTAAYGGNPPYTAPSARYPDGQIATDRDTLLGSGDPLLEDLGKSGKVDKYKSTYLD-VVE 324

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                   PR        + +++     ++SD   L      +R    A  G      D 
Sbjct: 325 AGVSLPINPR-------FNVLVSTTR--VSSDYQQLPQKGG-IREVHEARPGYVFCSVDY 374

Query: 382 AGIEARVLA----WMAGEQWKLKAFETGEDLYVTTYARSFN----------VAPAQVTKD 427
            G+E R +A    W  G      A  +G D++    A               A   V   
Sbjct: 375 GGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAAAEFLGESYAGLLAKVKAKDPVAVA 434

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R + K++    G      +    A     +  +F  L K               R  + 
Sbjct: 435 FRQLAKILNFGKGGGMTGGSLVYNARA--KDRVSFCLLAKRADMCGVERVPVTVQRKPKM 492

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                          C    +  R+   +    W E      +                 
Sbjct: 493 --------------VCRTCVEVARELDEKWLAAWPEQRDLQRKAKS-------------- 524

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
              +        +M+P    L        R     T            ++     Q +  
Sbjct: 525 ---LTYGGGVADVMIPGANIL--------RGACGYT------------QILNTPFQGLGA 561

Query: 608 DILAEGMMNATKA----------GYDIVLTVHDEIVCETPDTDEFNASMLYH----LM-- 651
                GM   ++           G  +VL VHDE++ E    D+            LM  
Sbjct: 562 VGCKLGMWRVSREMYTVRSSPLFGSRLVLNVHDELISELLADDQQRLHDAAERKALLMRD 621

Query: 652 ---TSNPSWA 658
               + P  A
Sbjct: 622 AMKETTPDLA 631


>gi|296130861|ref|YP_003638111.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
 gi|296022676|gb|ADG75912.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
          Length = 570

 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 78/268 (29%), Gaps = 49/268 (18%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L   +  L      +      L   L    G  L   ++   + +        P 
Sbjct: 217 RRLEELVTTIRELLADPHLNPDSQPHLLAAL-RRQGFSLSSTSKWEVREL------DHPV 269

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   +  +   +       +++   DGR R     +G   TGRW+            
Sbjct: 270 VAPLLEYKKLSRLLSANGW-AWLDSWVRDGRFRPAY-VVGGVVTGRWA------------ 315

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                              +D      +   +R+   A +G +LVVAD A +E RVLA M
Sbjct: 316 -------------------TDGGGALQLPASLRAAARADDGWRLVVADAAQLEPRVLAAM 356

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++    A   G DLY               T   R   K   L   Y     +   + 
Sbjct: 357 SGDRAMADAAR-GSDLYQRIA--------DAGTVPTRTDAKYALLGAIYGATTGSAGMLM 407

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                       LV+  +   E  +  +
Sbjct: 408 PRLARAYPQAVALVEAAARAGERGETVS 435


>gi|262342109|gb|ACY54565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 67.1 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 51/155 (32%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS  + +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRKLFKASPNQVMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L       K   
Sbjct: 61  ENADKI---------GISRRAVKTVTYAFLYGAGDS---KLGKSFDAQLTEQQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA      +       A E  FI     R
Sbjct: 109 IRQAYMDAVPGLEKLVNAVKSKA-ESGFINLCDGR 142


>gi|229472387|gb|ACQ72708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDVDCRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K + 
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGSE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA      + E   + A E   I +   R
Sbjct: 109 IRRAYLDAIPGLEQLVEAVKKKAKETGSIRSIDGR 143


>gi|229604938|ref|YP_002875638.1| putative DNA polymerase [Vibrio phage VP93]
 gi|227976983|gb|ACP44085.1| putative DNA polymerase [Vibrio phage VP93]
          Length = 811

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 112/345 (32%), Gaps = 50/345 (14%)

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           GL  +  T  +    L++ +K T        +++    ++S+ +    + E  +  G + 
Sbjct: 410 GLAKQGFTFASDISRLATLEKDTGTYYLRHEYDDEGNITKSSGMLQYVIPEKPDGSGIIH 469

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
             L    A+ TGR S      QNLPR                    ++ D        V+
Sbjct: 470 HRLNTC-ATVTGRLSASNPNLQNLPR--------------------AEEDKDGNAKSRVK 508

Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
               +   E  +++  D + +E  +     G+   L+  + G D++    A   N+   +
Sbjct: 509 EMFTSRFGEDGRIIEVDYSALEVVMGVVHTGDMKLLELLKAGTDMHCYRLAFQENLDYEE 568

Query: 424 VT--------------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           V               K  R   K    A  Y   A     +A  TG  +      +   
Sbjct: 569 VYRRCHDEGFEFHALWKSMRTAIKAPSFAAQYGASA---AGIAFATGCTVEFAQAFLDNE 625

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC--ERVKKAWRQKH----SRVSELWNE 523
           +A   + D   F + +++           +      +   + +R+ +    + +   + +
Sbjct: 626 AAL--FPDTAKFRQVIRDEVERTGNLPGNLKREMTDDGSVRLYRRGYWTSPAGMRYSFRQ 683

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           + +  ++    G   +   +      Y  + +   ++ +  G  L
Sbjct: 684 VERWVKRADGRGMEKVMDYKDTQLANYWCQGEAFFLMAVAFGMIL 728


>gi|291335762|gb|ADD95365.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C243]
          Length = 237

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            R H     + T+        P+  Q+  S+  R    AS G  +V ADL+GIE R+LA 
Sbjct: 66  GRIHHHCS-VSTNTFRCAHRKPNLAQVPASEEFRELFTASPGMVMVGADLSGIELRMLAH 124

Query: 392 MAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
             G  +  +       +D++     +             R   K +  A  Y  G
Sbjct: 125 YLGRYDGGRYADILLNDDIHQVNADKI---------GITRRQVKTVTYAFLYGAG 170


>gi|229472461|gb|ACQ72745.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+ +V ADL+GIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L       K   
Sbjct: 61  ENADKI---------GISRRAVKTVTYAFLYGAGD---AKLGKSFDAQLTESQAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA 131


>gi|47934776|gb|AAT39826.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 50/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     EG KL+  D +G+E R+LA    ++       +G D++ 
Sbjct: 157 APY-----GKECRSFRCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|229472499|gb|ACQ72764.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDADCRELFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K   
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGAE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDL 497
               + DA      + E     A  D 
Sbjct: 109 IRRAYPDAIPGLERLVEAVKTKAKVDR 135


>gi|262212371|gb|ACY35802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                         T   R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENA---------DKTGISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|309784631|ref|ZP_07679266.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
 gi|308927528|gb|EFP73000.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
          Length = 66

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 5/60 (8%)

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVT 411
           +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF         DLY  
Sbjct: 1   MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTDPDLYKL 60


>gi|47934618|gb|AAT39747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 74/224 (33%), Gaps = 48/224 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  +    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKXIARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RSC    EG  LV  D +G+E R+LA    ++
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDE 196


>gi|262212351|gb|ACY35792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212397|gb|ACY35815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  + +      D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYRDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A + K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAAIAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472425|gb|ACQ72727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDVDCRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K + 
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGSE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA      + E   + A E   I +   R
Sbjct: 109 IRRAYLDAIPGLEQLVEAVKKKAKETGSIRSIDGR 143


>gi|47934814|gb|AAT39845.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 166

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 32/183 (17%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 14  EFNVGSRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA 72

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 73  --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 111

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
               S P          RS     EG KL+  D +G+E R+LA    ++       +G D
Sbjct: 112 --SVSAPY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-D 163

Query: 408 LYV 410
           ++ 
Sbjct: 164 IHT 166


>gi|47934770|gb|AAT39823.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 82/238 (34%), Gaps = 50/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVLPPIVEERWSEKTGKRLKNKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLGGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     EG KL+  D +G+E R+LA    ++       +G D++ 
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|313760827|gb|ADR79390.1| DNA polymerase [T7-like bacteriophage Eptesicus
           fuscus/P1/IT/USA/2009]
          Length = 713

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 71/258 (27%), Gaps = 41/258 (15%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQAIQVFNN----- 279
           +  +    + L   L    G    + T+          L   K   P A           
Sbjct: 334 VEFNPNSNDHLIKVLTDR-GWEPTEFTDKGNPKCDDETLEYVKLKDPVAQHCLELVRKYL 392

Query: 280 -RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-E 337
              +    A       ++ + SDGR+ G++   GA  TGR +        +P   + H E
Sbjct: 393 VIQKLIAQAAEGKQAWLKNVKSDGRVHGSINPCGAV-TGRATHSSPNMAQVPANGKLHGE 451

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--E 395
                           PDP                    V  D +G+E R L   A   +
Sbjct: 452 TCRGAFGAHHNKKDGKPDP-----------------WIQVGVDASGLELRCLGHFAAPYD 494

Query: 396 QWKLKAFETGEDLY---VTTYARSFNVAPAQVTKDQ---RAIGKVMELALGYQGGAKAFQ 449
             +        D++         + NV   +        R   K    A  Y  GA    
Sbjct: 495 GGEYAENVLNGDIHWTNAVNAGLAPNVPRDKEDHYHDACRNNAKTFIYAFLYGAGA---A 551

Query: 450 KMASTTGLNLNTFAHLVK 467
           K+ S  G +      L K
Sbjct: 552 KIGSIVGGHAKEGKELTK 569


>gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B]
          Length = 179

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 26/183 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112
           ++LK  LE+     V  N  ++R +L    N  I +       +L     N +       
Sbjct: 10  ELLKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMD 66

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             A +    K    +E+  +     T   +          A    G Y   D  VT ++ 
Sbjct: 67  SLAERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 116

Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++ P   K           E  L  +   I   G  +D  + H  ++ + +   +L+++
Sbjct: 117 LKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKK 176

Query: 222 LES 224
              
Sbjct: 177 AHE 179


>gi|229472223|gb|ACQ72626.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDVDCRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K + 
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGSE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA      + E   + A E   I +   R
Sbjct: 109 IRRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGR 143


>gi|47934788|gb|AAT39832.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 74/224 (33%), Gaps = 48/224 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V          P+A  V    M   R  V +++
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR--VAQID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + ++A+  DGR+ G +   GA  TGR +                                
Sbjct: 118 SWLKAVXDDGRVHGRVITNGAV-TGRMTHLSPNM------------------------AQ 152

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RSC    EG  LV  D +G+E R+LA    ++
Sbjct: 153 VPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDE 196


>gi|308276816|gb|ADO26715.1| Hypothetical protein CpI19_1452 [Corynebacterium
          pseudotuberculosis I19]
          Length = 121

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 16 LTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
          L K GI  YA+  D  ++LF +  D  PVE+ D V    +P  +  +L        AH
Sbjct: 3  LAKAGIYPYADHGDFELLLFGYLIDASPVEVIDLVSGEQLPSEVLVSLVGPADEFAAH 60


>gi|300858866|ref|YP_003783849.1| hypothetical protein cpfrc_01449 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300686320|gb|ADK29242.1| hypothetical protein cpfrc_01449 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302206573|gb|ADL10915.1| Conserved hypothetical protein [Corynebacterium
          pseudotuberculosis C231]
 gi|302331128|gb|ADL21322.1| Conserved hypothetical protein [Corynebacterium
          pseudotuberculosis 1002]
          Length = 117

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 16 LTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
          L K GI  YA+  D  ++LF +  D  PVE+ D V    +P  +  +L        AH
Sbjct: 3  LAKAGIYPYADHGDFELLLFGYLIDASPVEVIDLVSGEQLPSEVLVSLVGPADEFAAH 60


>gi|148727216|ref|YP_001285708.1| p39 [Xanthomonas phage Xop411]
 gi|116583516|gb|ABK00186.1| p39 [Xanthomonas phage Xop411]
          Length = 793

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/427 (13%), Positives = 121/427 (28%), Gaps = 58/427 (13%)

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              ++ L  W   +  +  +  T     + L+S +       Q                 
Sbjct: 364 PGFVQPLAEW---QGSVPGQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYT 420

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
              E     G  +G L  +G                  +    H +L  + T      ++
Sbjct: 421 VDPET----GETKGMLSLVG------------------KDGIVHHQLQMVNTVTGRLSSA 458

Query: 353 DPDPLQIISD---CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
            P+   +       V++  ++   G  +V +D   +E  V   ++G+   +     G D+
Sbjct: 459 LPNLQNLPKGDKSEVKTLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGLDM 518

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    A+   V+   V +  +   K +E  + +       +  +          A    T
Sbjct: 519 HCKRLAQKEGVSYDYVFERAKDK-KHIEY-IVWNSKRSKAKGFSFQRAYGAGAAAIAAAT 576

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               +E ++       M    PE+              K+  ++    +      +  ++
Sbjct: 577 GMTVDEVKEMIRIEDEMYPGIPEYN-------------KRTMKELERNLVPSKMYITSSY 623

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           E  +         +  D     M + +    L    G  L +         +  T  +  
Sbjct: 624 EAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSSTTTKNYPVQGTGGEWM 683

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE-TPDTDEFNASML 647
           +           IVQ            N       IV TVHD    +  P+  + + ++L
Sbjct: 684 KAAM------ALIVQ------QWYARGNFGGRSL-IVNTVHDAAYIDSAPEVAKESMALL 730

Query: 648 YHLMTSN 654
           +  M   
Sbjct: 731 HACMEEA 737


>gi|47934614|gb|AAT39745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934636|gb|AAT39756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934640|gb|AAT39758.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934764|gb|AAT39820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934772|gb|AAT39824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934774|gb|AAT39825.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934778|gb|AAT39827.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934810|gb|AAT39843.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934832|gb|AAT39854.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 50/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     EG KL+  D +G+E R+LA    ++       +G D++ 
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|294085087|ref|YP_003551847.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664662|gb|ADE39763.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 418

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 91/291 (31%), Gaps = 41/291 (14%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +  RG  +D      +       +  L ++ +   YG+         L         +  
Sbjct: 28  MEHRGVPIDTTTLGLMRDNWHDFKQALIEKTDQ-AYGVYDKGSFRVHLFEHYLGAENIAW 86

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
             L     Q    + K +  +  Q+   R    R  + ++  +   +  DGR R  L   
Sbjct: 87  PRLASGELQLDRDTFKMMALRHPQLAELREL--RKTLAEMREIKLTVGRDGRNRTLLSPF 144

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             S+TGR         N P  ++                      +  +    RS +   
Sbjct: 145 N-SKTGR---------NQPSTTK---------------------FIFGLPAWARSLIKPE 173

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD---- 427
            G  L   D +  E  + A ++G+    +A+ +G D Y+     +  +AP   TK+    
Sbjct: 174 PGTALAYLDFSSQEIAIAACLSGDDALWQAYASG-DPYIQFAIDA-GLAPVGATKESHKA 231

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT-FAHLVKTNSAPEEWED 477
           +R   KV+ L + Y   A    + AS   L                  W +
Sbjct: 232 ERDACKVIMLGVQYGMSAYGMGQKASLHVLEAEDLLQRHKDVYLTFWRWAE 282


>gi|229472381|gb|ACQ72705.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472595|gb|ACQ72812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDVDCRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K + 
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGSE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA      + E   + A E   I +   R
Sbjct: 109 IRRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGR 143


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 74/228 (32%), Gaps = 49/228 (21%)

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            +   +   +++  R +   L++  +     ++SD ++R  +     + +   S      Q
Sbjct: 1031 EVAGLLLQKLQLERGSANFLHSGTDGRLSILHSDNKVRQYIDLTATTTSRTTSSY-PSCQ 1089

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIE 385
            N+P+  +S                            +R   ++  G+K   V  D + +E
Sbjct: 1090 NIPKDDKS---------------------------SLRHLFVSRFGEKGRCVEIDYSQLE 1122

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----------QRAIGKVM 435
              V+A +  ++  +     G D +V   +    ++  ++              R + K  
Sbjct: 1123 IVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGISYDEIYNGYKRGEAKFLKLRKVAKTF 1182

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                 Y  G         TTG+ +      ++     EE+     F R
Sbjct: 1183 SFQRLYGAGVPLLH---KTTGIPVQDLQECIRREE--EEYPGISRFHR 1225


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
            gambiense DAL972]
          Length = 1404

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 74/228 (32%), Gaps = 49/228 (21%)

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            +   +   +++  R +   L++  +     ++SD ++R  +     + +   S      Q
Sbjct: 1031 EVAGLLLQKLQLERGSANFLHSGTDGRLSILHSDNKVRQYIDLTATTTSRTTSSY-PSCQ 1089

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIE 385
            N+P+  +S                            +R   ++  G+K   V  D + +E
Sbjct: 1090 NIPKDDKS---------------------------SLRHLFVSRFGEKGRCVEIDYSQLE 1122

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----------QRAIGKVM 435
              V+A +  ++  +     G D +V   +    ++  ++              R + K  
Sbjct: 1123 IVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGISYDEIYNGYKRGEAKFLKLRKVAKTF 1182

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                 Y  G         TTG+ +      ++     EE+     F R
Sbjct: 1183 SFQRLYGAGVPLLH---KTTGIPVQDLQECIRREE--EEYPGISRFHR 1225


>gi|229819538|ref|YP_002881064.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
 gi|229565451|gb|ACQ79302.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
          Length = 585

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 74/233 (31%), Gaps = 49/233 (21%)

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L  ++         +      L   L   +GL +   ++   QR         P   
Sbjct: 220 LEALAAQVRDALDVPTLNPDSQPDLLRAL-RRSGLDVTSTSKWELQR------SEHPAVA 272

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +   +      +       ++   +DGR R      G   TGRW+        LP+   
Sbjct: 273 PLLEYKKLYRLLSANGW-AWMDQWVTDGRFRAEWVPGGVV-TGRWATRGGGALQLPKG-- 328

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +RS V A +G  LV+AD A +E R+LA M+G
Sbjct: 329 -----------------------------IRSAVRADDGWLLVIADAAQLEPRILAAMSG 359

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +   + A   G DLY         +  A V  D RA  KV  LA  Y      
Sbjct: 360 DDAMVAAGARG-DLYA-------GLVEAGVV-DTRAHAKVAMLAALYGATTGQ 403


>gi|47934768|gb|AAT39822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 50/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     EG KL+  D +G+E R+LA    ++       +G D++ 
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|229472487|gb|ACQ72758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDVDCRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K + 
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGSE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA      + E   + A E   I +   R
Sbjct: 109 IRRAYLDAIPGLEQLVEAVKKEAKEAGSIRSIDGR 143


>gi|47934780|gb|AAT39828.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 50/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     EG KL+  D +G+E R+LA    ++       +G D++ 
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNGILSG-DIHT 208


>gi|262342283|gb|ACY54652.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQVYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|47934730|gb|AAT39803.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934732|gb|AAT39804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934734|gb|AAT39805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 35/186 (18%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++   L  + G      TE       + VL+S     P+A  +    M   
Sbjct: 56  EPFNPGSRQQIAERLIEK-GWKPTKRTEKGSVIVDEEVLASLD--YPEAKALAEYMMLQK 112

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R A  ++++ +EA+  DGR+ G +   GA  TGR +                        
Sbjct: 113 RIA--QIDSWLEAVGKDGRVHGRVITNGAV-TGRMTHMSPNM------------------ 151

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                    P+         R      +G KLV  D AG+E R+LA    +        +
Sbjct: 152 ------AQVPNSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDNVYTHEVVS 205

Query: 405 GEDLYV 410
           G D++ 
Sbjct: 206 G-DIHT 210


>gi|310818189|ref|YP_003950547.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309391261|gb|ADO68720.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 630

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 91/363 (25%), Gaps = 93/363 (25%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           LP   R     + +++     ++SD   L      +R    A  G      D  G+E R 
Sbjct: 260 LPINPR----FNVLVSTTR--VSSDYQQLPQKGG-IREVHEARPGYVFCSVDYGGLELRT 312

Query: 389 LA----WMAGEQWKLKAFETGEDLYVTTYARSFN----------VAPAQVTKDQRAIGKV 434
           +A    W  G      A  +G D++    A               A   V    R + K+
Sbjct: 313 MAQRAIWELGYSKMADALNSGLDVHTLAAAEFLGESYAGLLAKVKAKDPVAVAFRQLAKI 372

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +    G      +    A     +  +F  L K               R  +        
Sbjct: 373 LNFGKGGGMTGGSLVYNARA--KDRVSFCLLAKRADMCGVERVPVTVQRKPKM------- 423

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                   C    +  R+   +    W E      +                    +   
Sbjct: 424 -------VCRTCVEVARELDEKWLAAWPEQRDLQRKAKS-----------------LTYG 459

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                +M+P    L        R     T            ++     Q +       GM
Sbjct: 460 GGVADVMIPGANIL--------RGACGYT------------QILNTPFQGLGAVGCKLGM 499

Query: 615 MNATKA----------GYDIVLTVHDEIVCETPDTDEFNASMLYH----LM-----TSNP 655
              ++           G  +VL VHDE++ E    D+            LM      + P
Sbjct: 500 WRVSREMYTVRSSPLFGSRLVLNVHDELISELLADDQQRLHDAAERKALLMRDAMKETTP 559

Query: 656 SWA 658
             A
Sbjct: 560 DLA 562


>gi|262342111|gb|ACY54566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 15/141 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I S G+ +V ADL+GIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDGRFRELFIPSPGQLMVGADLSGIELRMLAHYLARYDGGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+ ++   +L+      K   
Sbjct: 61  VNADKI---------GISRREVKTVTYAFLYGAGD---AKIGTSFDSSLSETKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPE 491
               +  A +    +     E
Sbjct: 109 IRSAFISAIDGLDELLSAIKE 129


>gi|229472215|gb|ACQ72622.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472263|gb|ACQ72646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGEE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|262342295|gb|ACY54658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212405|gb|ACY35819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  VNADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212383|gb|ACY35808.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472173|gb|ACQ72601.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472401|gb|ACQ72715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262342271|gb|ACY54646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 VRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212385|gb|ACY35809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212361|gb|ACY35797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262342269|gb|ACY54645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342289|gb|ACY54655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342317|gb|ACY54669.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342319|gb|ACY54670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342323|gb|ACY54672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342325|gb|ACY54673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212399|gb|ACY35816.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342299|gb|ACY54660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|47934830|gb|AAT39853.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 50/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVKQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     EG KL+  D +G+E R+LA    ++       +G D++ 
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|229472373|gb|ACQ72701.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472457|gb|ACQ72743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472351|gb|ACQ72690.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472367|gb|ACQ72698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472447|gb|ACQ72738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262342099|gb|ACY54560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA    + + E     A +  +I     R
Sbjct: 109 IRRAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472485|gb|ACQ72757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKRKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|229472189|gb|ACQ72609.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472331|gb|ACQ72680.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472419|gb|ACQ72724.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472601|gb|ACQ72815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262212363|gb|ACY35798.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212401|gb|ACY35817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212413|gb|ACY35823.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212415|gb|ACY35824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342105|gb|ACY54563.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342275|gb|ACY54648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342277|gb|ACY54649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342281|gb|ACY54651.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342287|gb|ACY54654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342291|gb|ACY54656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342293|gb|ACY54657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342297|gb|ACY54659.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342301|gb|ACY54661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342307|gb|ACY54664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472511|gb|ACQ72770.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472585|gb|ACQ72807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262342123|gb|ACY54572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212391|gb|ACY35812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472455|gb|ACQ72742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDADCRELFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K + 
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGSE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA      + E   + A E   I +   R
Sbjct: 109 IRRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGR 143


>gi|229472241|gb|ACQ72635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|47934660|gb|AAT39768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 81/239 (33%), Gaps = 50/239 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D+     L   +      ++ E++++   +V                   +  
Sbjct: 1   ERNGFKLDIDACELLRAKLSDRMGIIEDEVQAVFPPIVEERWSEKTGKRLKDKITVFNLA 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT--PQAIQVFNNRMRASRSAVLKLN 292
             +++   L +  G      TE     V     +    PQA  +    M   R  V  ++
Sbjct: 61  SRKQIAERL-MGLGWTPTKHTEKGQPIVDEGTLEDIDIPQAKLIAEYLMLQKR--VGMID 117

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           + ++ ++    R+ G +   G + TGR +        +P  ++ +               
Sbjct: 118 SWLKHVDKTTHRVHGGVITQG-TITGRMAHRNPNLGQVPSVTKPY--------------- 161

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                     + +RS     EG  LV +DL+G+E R L+    ++   +    G D++ 
Sbjct: 162 ---------GEEIRSLWTVDEGNVLVGSDLSGVELRCLSHYMQDEEWQEELLNG-DIHT 210


>gi|47934740|gb|AAT39808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934806|gb|AAT39841.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 50/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNMAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     EG KL+  D +G+E R+LA    ++       +G D++ 
Sbjct: 157 APY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|229472337|gb|ACQ72683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472533|gb|ACQ72781.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSEA 131


>gi|229472343|gb|ACQ72686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472583|gb|ACQ72806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472321|gb|ACQ72675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDADCRELFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K   
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGAE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDL 497
               + DA      + E     A  D 
Sbjct: 109 IRRAYLDAIPGLERLVEAVKTKAKVDR 135


>gi|229472253|gb|ACQ72641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262212367|gb|ACY35800.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212379|gb|ACY35806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K    A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTATYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|84662633|ref|YP_453598.1| putative DNA directed DNA polymerase [Xanthomonas phage OP1]
 gi|84570682|dbj|BAE72745.1| putative DNA directed DNA polymerase [Xanthomonas oryzae phage OP1]
          Length = 793

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/455 (12%), Positives = 135/455 (29%), Gaps = 104/455 (22%)

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLK 290
              ++ L  W     G         T + V  +    +  P+ +Q +  + R ++     
Sbjct: 364 PGFVQPLPEWQGSAPG------QYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTY 417

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
             T+       G  +G L  +G+                      H +L  + T      
Sbjct: 418 YYTVD---PETGETKGMLSLVGS------------------DGIVHHQLQMVNTVTGRLS 456

Query: 351 TSDPDPLQIISD---CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           ++ P+   +       V+   ++   G  +V +D   +E  V   ++G+   +     G 
Sbjct: 457 SALPNLQNLPKGDKSEVKKLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGL 516

Query: 407 DLYVTTYARSFNVAPAQV---TKD-----------QRAIGKVMELALGYQGGAKAFQKMA 452
           D++    A+   V+   V    KD           +R+  K        +        +A
Sbjct: 517 DMHCKRLAQKEGVSYDYVFERAKDKKHIDYIVWNSKRSKAKGFSFQ---RAYGAGAAAIA 573

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF-------IGTACER 505
           + TG+ ++    +++     E +     + +   +    + I           +G +   
Sbjct: 574 AATGMTVDEVKEMIRIE--DEMYPGVPEYNKRTMKELERNLIPSKMYIASSYEVGVSLNL 631

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
            K  +R    +   ++           +        +R  V L +      N  +    G
Sbjct: 632 GKSYFRTPDGKRYTMY-----------QTQAPKWLWEREGVQLTFSSTTTKNYPVQGTGG 680

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
             +        ++ +    +Q      +GG+                           IV
Sbjct: 681 EWM--------KAAMALIVQQWYARGNFGGR-------------------------SLIV 707

Query: 626 LTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAK 659
            TVHD    +  P+  + + ++L+  M     + +
Sbjct: 708 NTVHDAAYIDSAPEVAKESMALLHACMEEASRYME 742


>gi|262212403|gb|ACY35818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVAYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212387|gb|ACY35810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|308178280|ref|YP_003917686.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745743|emb|CBT76715.1| putative DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 549

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 80/284 (28%), Gaps = 28/284 (9%)

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            E+L   +    G   +   +            L P + Q     +  +  AV  +    
Sbjct: 184 REQLGPRVSD-YGRPPKLAAKAQQLATALGTPGLNPDSPQELLRALHKAGFAVSSVRAWE 242

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
               +   +   L++   SR     G         +  R H               S   
Sbjct: 243 LEQLNHPLIAEVLEYKKLSRLASTHGDA-WLDQWVKNGRFHPHYVLGTVTSGRWAASGGG 301

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
            LQ +   +R  V   EG   VVAD   +E R+LA ++ +Q   KA +   DLY      
Sbjct: 302 ALQ-LPHSIRQVVRTREGSTFVVADGRQLEPRILAAISNDQQLQKAGQQD-DLYQ----- 354

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            + +    V    R   K+  L++ Y                     A      +    +
Sbjct: 355 -WLLDAKLVAS--RNDAKLGMLSVIYG----------------GGGGASGAVGAALTRSF 395

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
             A  F         +      F+G  C    + W       S+
Sbjct: 396 PTAMRFVEQAAATGQQGGGVRSFLGRGCPPADEQWLAGQKATSD 439


>gi|229472349|gb|ACQ72689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDATPGLEKLVTAVKSKA 131


>gi|229472475|gb|ACQ72752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDVDCRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K + 
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGSE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA      + E   + A E   I +   R
Sbjct: 109 IRRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGR 143


>gi|47934766|gb|AAT39821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 50/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +                                
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNL------------------------AQ 151

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     EG KL+  D +G+E R+LA    ++       +G D++ 
Sbjct: 152 VPSVPAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934828|gb|AAT39852.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 82/237 (34%), Gaps = 49/237 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            P          RS     EG KL+  D +G+E R+LA    ++       +GE  +
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSGEHPH 208


>gi|207109828|ref|ZP_03243990.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 152

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 16/167 (9%)

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D+++ T    F    A   K++R+I K +   L Y  G+   +K++ T  ++LN 
Sbjct: 1   FLKGRDIHLETSKALFGGDLA---KEKRSIAKSINFGLVYGMGS---KKLSETLNISLNE 54

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA-WRQKHSRVSEL 520
               ++     + +   +++   M+E      ++     T   R +   +   +  +   
Sbjct: 55  AKSYIEA--YFKRFPSIKDYLNRMKEEI----LKTSKAFTLLGRYRVFDFTGANDYIKG- 107

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            N L +     I  G A    K   + +    K+  ++ L+L     
Sbjct: 108 -NYLREGV-NAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDE 152


>gi|262342311|gb|ACY54666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLSGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472449|gb|ACQ72739.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472451|gb|ACQ72740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472479|gb|ACQ72754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDVDCRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K + 
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGSE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA      + E   + A E   I +   R
Sbjct: 109 IRRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGR 143


>gi|229472357|gb|ACQ72693.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262212061|gb|ACY35647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212137|gb|ACY35685.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212159|gb|ACY35696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     +   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKRGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIEAIDGR 142


>gi|229472363|gb|ACQ72696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262212359|gb|ACY35796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVAYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212377|gb|ACY35805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRELFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472377|gb|ACQ72703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GMSRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKDKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472319|gb|ACQ72674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    A+ G+ +V ADL+GIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDKDFRKLFQATPGQVMVGADLSGIELRMLAHYLARYDAGRYAEVLLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    LN      K   
Sbjct: 61  ENADKI---------GISRKQVKTVTYAFLYGAGD---AKLGRSYDPQLNEKEAKRKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAVPGLETLVTAVKSKA 131


>gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4]
 gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4]
          Length = 678

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 101/561 (18%), Positives = 159/561 (28%), Gaps = 128/561 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDPVMPQVLK 58
           M  L  D ET         G+    +       A+  D      + +         + L 
Sbjct: 1   MKLLLSDIET--------NGLLDTVDKFHC---AWTVDYFTGEWKAYRPWDFEQYIKDL- 48

Query: 59  EALENTDVTIVAHNS-YFERTVLKA----CFN--LDIPIHRWICTLVLARSNGLPSALKA 111
           EA       IV HN   ++   LK      F   L+IP    + TLV++R     S LK 
Sbjct: 49  EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLH--SNLKD 106

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP----NHREAWRLFGE----YCKG 163
                 L       GK              +              AW  F E    YCK 
Sbjct: 107 TDA--GLLRSGRITGK---LYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQ 161

Query: 164 DVTVTREIFKR--------------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           DV VT ++F++              L      E E  +L       GY  D   A  L  
Sbjct: 162 DVQVTLKLFEKFMGDTWYFPNGVDGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYA 221

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED---------------- 253
            V   R ++  EL   T+G     +   +   +L  ++G  L                  
Sbjct: 222 EVAGRRAEILMELTR-TFGSWYEPKGGTQ--PFLHPKSGKPLHKYPRVKYPKAGSIWTSA 278

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK---------LNTLVEAMNSDG-- 302
              T  + +   +   TP     FN   RA    VLK                ++ D   
Sbjct: 279 KRPTLAKTLYLKDAPFTPIQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLS 338

Query: 303 --------------RLRGTLQFLGASRT-GRWS-GCVFPPQNLPRPSRSHEELDQIITHL 346
                         ++    ++L   +  G+ + G     +   +    H +++      
Sbjct: 339 LVIEHKLIPEEFIPKVELIKEYLVIQKLIGQLAEGDNAWLRMD-KGGYIHGQVNPNGAVT 397

Query: 347 PTSITSDPDPLQIISDCV------RSCVIA--------SEGKKLVVADLAGIEARVLAWM 392
             +  S P+  Q+ S         RS   A         +    V  D +G+E R L   
Sbjct: 398 GRATHSYPNLAQVPSIRKYKGVECRSLFGAEHHLDYHTGKPWIQVGVDASGLELRCLGHF 457

Query: 393 A---GEQWKLKAFETGEDLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
                +   +     G D++      A    +         R   K       Y  GA+ 
Sbjct: 458 MAKFDDGEYINTILNG-DIHTQNQIAA---GLPT-------RDNAKTFIYGFLYGAGAQK 506

Query: 448 FQKMASTTGLNLNTF-AHLVK 467
             ++    G       A L+K
Sbjct: 507 IGEIVGKFGEEGKKAGAELIK 527


>gi|229472577|gb|ACQ72803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD V R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLVFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 562

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 124/433 (28%), Gaps = 125/433 (28%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L  ++     G   +      +   L    G+ +    +   + +        P 
Sbjct: 202 KALVELAAKISEAFGGRPVNPDSPPSVVRAL-ARAGIEVPAARKYLLKGI------DHPA 254

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   +   SR         ++   +DGR R     +G   +GRW+            
Sbjct: 255 VGPLLEYK-ELSRLFTANGWAWLDEWVADGRFRPHY-VVGGVVSGRWASR---------- 302

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                P  L       R+CV A  G KLVVAD A +E RVL  +
Sbjct: 303 --------------GGGALQIPKVL-------RTCVRADSGWKLVVADAAQLEPRVLTAL 341

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFN----VAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +G++          DLY       F+    V  A   +D RA  K+  L+  Y G +   
Sbjct: 342 SGDRRLADV-AAATDLYARLGEALFSGARWVPAADDDRDDRARAKIAMLSAMYGGTSG-- 398

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            +     GL               + + DA ++     +           +G        
Sbjct: 399 -EAGPLLGL-------------LRQRFPDAVSYVEHAAQAGERGERVRSRLGRTSPAPSA 444

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           AWR     ++       +A E                                L + R+ 
Sbjct: 445 AWRALTGGLAS-----DEAAE--------------------------------LKARRA- 466

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEGMMNATK---AGYDI 624
                          +R   R        T N +VQA + D+ A  +        A   +
Sbjct: 467 ---------------SRGWGR-------FTRNFVVQASAADMTAVMLATLRTRLPAPAHL 504

Query: 625 VLTVHDEIVCETP 637
           V   HDE++  TP
Sbjct: 505 VFFQHDEVIVHTP 517


>gi|262212223|gb|ACY35728.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G +            L++ A   K   
Sbjct: 61  VNADKI---------GISRKLAKTVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472371|gb|ACQ72700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 VRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472235|gb|ACQ72632.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472491|gb|ACQ72760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|47934834|gb|AAT39855.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 50/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            P          RS     EG KL+  D +G+E R+LA    ++       +G D++ 
Sbjct: 157 APY-----GKECRSFWGVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934826|gb|AAT39851.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 78/237 (32%), Gaps = 49/237 (20%)

Query: 193 NDRGYCVDVA------------LAHTLNQIVDVERTKLDQELESLTYG------LVSSSR 234
              G+ +DV             +  T  Q+  V    +++     T           +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQTTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            P          RS     EG KL+  D +G+E R+LA    ++       +GE  +
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNGILSGEHPH 208


>gi|229472271|gb|ACQ72650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262342107|gb|ACY54564.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 15/142 (10%)

Query: 355 DPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVT 411
           +  Q+ SD   R    AS  + +V ADL+GIE R+LA      ++ +        D++  
Sbjct: 3   NLAQVPSDAEFRKLFKASPNQVMVGADLSGIELRMLAHYLARYDEGRYADVLLHGDIHQE 62

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +             R   K +  A  Y  G     K+  +    L       K    
Sbjct: 63  NADKI---------GISRRAVKTVTYAFLYGAGDS---KLGKSFDAQLTEQQAKKKGKEI 110

Query: 472 PEEWEDAENFCRWMQENHPEHA 493
            + + DA      +       A
Sbjct: 111 RQAYMDAVPGLEKLVNAVKSKA 132


>gi|229472249|gb|ACQ72639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|158345045|ref|YP_001522810.1| putative DNA polymerase A [Pseudomonas phage LKD16]
 gi|114796398|emb|CAK25954.1| putative DNA polymerase A [Pseudomonas phage LKD16]
          Length = 808

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 79/263 (30%), Gaps = 51/263 (19%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T    L + +K   +A ++        +       T     N DG ++ T         
Sbjct: 400 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITH--TYNKDGSIKDTKGM------ 451

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD---------CVRSC 367
                     Q +      H  L+   T      +S P+  Q+ S           V+  
Sbjct: 452 ---------LQYVDEDGIIHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEM 502

Query: 368 VIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN------- 418
            ++       L   D   +E  +LA ++ ++  L+    G D+++   A   N       
Sbjct: 503 FVSRFGPDGMLGETDYTALEVVMLAALSKDRNLLEKLMAGTDMHLYRLAGKHNNWNGFDY 562

Query: 419 --VAPAQVTKDQ---------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             +   +   +          R   K    +  Y   A      A  TG  +      + 
Sbjct: 563 DQLVAIKKDPNHEWHGRVMQARKKIKPKAFSAQYGASAAGI---AFNTGCTVEEAQEFLD 619

Query: 468 TNSAPEEWEDAENFCRWMQENHP 490
             +A   + ++  F + ++++  
Sbjct: 620 NEAAL--FPESIAFRQIVRDSAE 640


>gi|229472589|gb|ACQ72809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|47934622|gb|AAT39749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 50/239 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV     L   +      ++ E++++   +V                   +  
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT--PQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G      TE     V     +    PQA  +    M   R  V  ++
Sbjct: 61  SRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDIDIPQAQLIAEYLMLQKR--VGMID 117

Query: 293 TLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             ++ ++    R+ G +   G + TGR +        +P  ++ +               
Sbjct: 118 AWLKRVDEKTHRVHGGVITQG-TITGRMAHRNPNLGQVPSVTKPY--------------- 161

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                     + +RS     +G  L   DL+GIE R LA    +    +    G D++ 
Sbjct: 162 ---------GEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEWTEELLNG-DIHT 210


>gi|47934616|gb|AAT39746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 211

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 50/239 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV     L   +      ++ E++++   +V                   +  
Sbjct: 2   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 61

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT--PQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G      TE     V     +    PQA  +    M   R  V  ++
Sbjct: 62  SRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDIDIPQAQLIAEYLMLQKR--VGMID 118

Query: 293 TLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             ++ ++    R+ G +   G + TGR +        +P  ++ +               
Sbjct: 119 AWLKRVDEKTHRVHGGVITQG-TITGRMAHRNPNLGQVPSVTKPY--------------- 162

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                     + +RS     +G  L   DL+GIE R LA    +    +    G D++ 
Sbjct: 163 ---------GEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEWTEELLNG-DIHT 211


>gi|47934642|gb|AAT39759.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 50/239 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +DV     L   +      ++ E++++   +V                   +  
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSEKTGKQLKDKVTIFNLA 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT--PQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G      TE     V     +    PQA  +    M   R  V  ++
Sbjct: 61  SRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDIDIPQAQLIAEYLMLQKR--VGMID 117

Query: 293 TLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             ++ ++    R+ G +   G + TGR +        +P  ++ +               
Sbjct: 118 AWLKRVDEKTHRVHGGVITQG-TITGRMAHRNPNLGQVPSVTKPY--------------- 161

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                     + +RS     +G  L   DL+GIE R LA    +    +    G D++ 
Sbjct: 162 ---------GEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEWTEELLNG-DIHT 210


>gi|229472423|gb|ACQ72726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472231|gb|ACQ72630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +           D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGGYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472561|gb|ACQ72795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKVATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262342141|gb|ACY54581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAW-MAG-EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   +A+ G+ +V ADL+GIE R+LA  ++  +  +        D++ 
Sbjct: 1   PNLAQVPSDKDFRQLFMATPGQIMVGADLSGIELRMLAHYLSRFDGGRYAEILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L       K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGRSYDPQLTEKEAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAVPGLETLVTAVKSKA 131


>gi|229472495|gb|ACQ72762.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K    A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTATYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|70919502|ref|XP_733432.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56505224|emb|CAH83005.1| hypothetical protein PC300270.00.0 [Plasmodium chabaudi chabaudi]
          Length = 199

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 21/165 (12%)

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+      H +    I       +   D ++ IS   +     S  + L+  D 
Sbjct: 1   DQPNLQNI------HSKFRCTI-------SLKNDDIKPISVKTKHVKNKSVNQNLLTFDY 47

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             +E  V+A+++ +   LK      D++V T    FN     VTK+ R + K +   + Y
Sbjct: 48  KQMELFVMAYLSFDSQLLK-MLNNSDVFVETAKVLFNT--NDVTKELRRMTKTVIYGILY 104

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
                    +A    ++ N    L+        + +   F +  +
Sbjct: 105 GQSEN---GLAKNLLVSENFAKSLIDNFFNF--YPNVFKFMQKQK 144


>gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A]
 gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A]
          Length = 678

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 101/561 (18%), Positives = 159/561 (28%), Gaps = 128/561 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDPVMPQVLK 58
           M  L  D ET         G+    +       A+  D      + +         + L 
Sbjct: 1   MKLLLSDIET--------NGLLDTVDKFHC---AWTVDYFTGEWKAYRPWDFEQYIKDL- 48

Query: 59  EALENTDVTIVAHNS-YFERTVLKA----CFN--LDIPIHRWICTLVLARSNGLPSALKA 111
           EA       IV HN   ++   LK      F   L+IP    + TLV++R     S LK 
Sbjct: 49  EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLH--SNLKD 106

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP----NHREAWRLFGE----YCKG 163
                 L       GK              +              AW  F E    YCK 
Sbjct: 107 TDA--GLLRSGRITGK---LYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQ 161

Query: 164 DVTVTREIFKR--------------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           DV VT ++F++              L      E E  +L       GY  D   A  L  
Sbjct: 162 DVQVTLKLFEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYA 221

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED---------------- 253
            V   R ++  EL   T+G     +   +   +L  ++G  L                  
Sbjct: 222 EVAGRRAEILMELTR-TFGSWYEPKGGTQ--PFLHPKSGKPLHKYPRVKYPKAGSIWTSA 278

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK---------LNTLVEAMNSDG-- 302
              T  + +   +   TP     FN   RA    VLK                ++ D   
Sbjct: 279 KKPTLAKTLYLKDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLS 338

Query: 303 --------------RLRGTLQFLGASRT-GRWS-GCVFPPQNLPRPSRSHEELDQIITHL 346
                         ++    ++L   +  G+ + G     +   +    H +++      
Sbjct: 339 LVIEHKLVPEEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMD-KGGYIHGQVNPNGAVT 397

Query: 347 PTSITSDPDPLQIISDCV------RSCVIA--------SEGKKLVVADLAGIEARVLAWM 392
             +  S P+  Q+ S         RS   A         +    V  D +G+E R L   
Sbjct: 398 GRATHSYPNLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVDASGLELRCLGHF 457

Query: 393 A---GEQWKLKAFETGEDLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
                +   +     G D++      A    +         R   K       Y  GA+ 
Sbjct: 458 MAKFDDGEYINTILNG-DIHTQNQIAA---GLPT-------RDNAKTFIYGFLYGAGAQK 506

Query: 448 FQKMASTTGLNLNTF-AHLVK 467
             ++    G       A L+K
Sbjct: 507 IGEIVGKFGEEGKKAGAELIK 527


>gi|262342131|gb|ACY54576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 15/157 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R     + G+ +V ADL+GIE R+LA      ++          D++ 
Sbjct: 1   PNLAQVPSDSEFRKLFQPTPGQIMVGADLSGIELRMLAHYLARFDRGVYADILLHGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +   +L+      K   
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGAGD---AKIGLSYDSSLSPTRAKSKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
               + +A +    + E     + +         ++K
Sbjct: 109 IRTAFVEAIDGLAQLLEAIKTASEKGYVRSIDTRKIK 145


>gi|229472273|gb|ACQ72651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472441|gb|ACQ72735.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    A+ G  +V ADLAGIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRQLFTATPGLVMVGADLAGIELRMLAHYLARYDEGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L       K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGD---AKLGRSYDPQLAEKEAKRKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAVPGLEKLVSAVKSKA 131


>gi|229472341|gb|ACQ72685.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYTMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 123/414 (29%), Gaps = 122/414 (29%)

Query: 149 NHREAWRLFG----EYCKGDV----TVTREIFKRLEPLSSK----EQELWYLDQTINDRG 196
           +H + W  +     EYCK DV     V   + + L+  S K    E ++ ++ Q   D G
Sbjct: 32  DHTD-WSTYSPEMREYCKRDVGLLEKVVLALDEELKGFSEKSIQLEHQVAWIIQEQMDNG 90

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESL----------------------TYGL----- 229
           + +D      L   +  ++ +L+ E+  +                      + GL     
Sbjct: 91  WLLDQEAVFMLLAELKEKKMELEDEVHKVFGPIAKPVRRIVPKIKKDGCMSSVGLKYYGE 150

Query: 230 ----------------VSSSRCLEKLKTWLFLETGLHLEDLTETT---------CQRVLS 264
                             +    +++   L    G      T  T            V+ 
Sbjct: 151 RWSDEICGEHTRLEWQEFNIGSRQQIAERLMSA-GWKPTKFTPKTPKGGGGNPIVDDVVL 209

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
           ++ K  P+A  + +      R A+ +  + ++A+  DGR+ G +   GA           
Sbjct: 210 ADVKGIPEATLMADYLTVVRRIAMAQ--SWLDAVEDDGRVHGEVNSNGA----------- 256

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIASEGKKLVV 378
                                        P+  Q+ S        +RSC    +G KLV 
Sbjct: 257 --------------------VTGRMTHYSPNLGQVTSGSKIYGPEMRSCWTVPQGHKLVG 296

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGE-----DLYVTTYARSFNVAPAQVTKDQRAIGK 433
            D  G+E R+LA    +    +    G+     D +     R+  +       + R   K
Sbjct: 297 MDADGLELRMLAHYMNDPEYTRMVAEGDKDAGTDAHTAN-QRAAGL-------NSRDDAK 348

Query: 434 VMELALGYQGG---AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               A  Y  G           +  G  L     L  T +     E   N  R 
Sbjct: 349 TFIYAFLYGAGDAKIGTIVGKGAKAGRELK-ARFLDNTPALASLRERVSNSARR 401


>gi|229472509|gb|ACQ72769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRRLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|262342147|gb|ACY54584.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342267|gb|ACY54644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G   V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVTVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472557|gb|ACQ72793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               R             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADRI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262212191|gb|ACY35712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE RVL+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRVLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G +            L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|32128451|ref|NP_858986.1| DNA polymerase lacking N-terminal exonuclease domain [Xanthomonas
           phage Xp10]
 gi|31788514|gb|AAP58706.1| 38L [Xanthomonas phage Xp10]
          Length = 794

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/427 (13%), Positives = 121/427 (28%), Gaps = 58/427 (13%)

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              ++ L  W   +  +  +  T     + L+S +       Q                 
Sbjct: 364 PGFVQPLAEW---QGSVPGQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYT 420

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
              E     G  +G L  +G+                      H +L  + T      ++
Sbjct: 421 VDPET----GETKGMLSLVGS------------------DGIVHHQLQMVNTVTGRLSSA 458

Query: 353 DPDPLQIISD---CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
            P+   +       V++  ++   G  +V +D   +E  V   ++G+   +     G D+
Sbjct: 459 LPNLQNLPKGDKSEVKTLFVSRFPGGFIVQSDFTALEIYVQGNLSGDIALIADLRAGLDM 518

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    A+   V+   V +  +   K +E  + +       +  +          A    T
Sbjct: 519 HCKRLAQKEGVSYDYVFERAKDK-KHIEY-IVWNSKRSKAKGFSFQRAYGAGAAAIAAAT 576

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               +E ++       M    PE+              K+  ++    +      +  ++
Sbjct: 577 GMTVDEVKEMIRIEDEMYPGIPEYN-------------KRTMKELERNLIPSKMYIASSY 623

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           E  +         +  D     M + +    L    G  L +         +  T  +  
Sbjct: 624 EAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSSTTTKNYPVQGTGGEWM 683

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE-TPDTDEFNASML 647
           +           IVQ            N       IV TVHD    +  P+  + + ++L
Sbjct: 684 KAAM------ALIVQ------QWYARGNFGGRSL-IVNTVHDAAYIDSAPEVAKESMALL 730

Query: 648 YHLMTSN 654
           +  M   
Sbjct: 731 HACMEEA 737


>gi|262212231|gb|ACY35732.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRCADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472355|gb|ACQ72692.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472245|gb|ACQ72637.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATDKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472433|gb|ACQ72731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R     + G+ +V ADL+GIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDGRFRELFKPTPGQVMVGADLSGIELRMLAHYLARYDSGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +   +L+      K + 
Sbjct: 61  VNADKI---------GISRKQVKTVTYAFLYGAGD---VKIGKSLDSSLSDKKAKAKGSE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + +  A +    +          D     A ++ K      H  +
Sbjct: 109 IRKAYVSAIDGLGDLLAAVKSAG--DRGFVKAIDQRKILVDSSHKAL 153


>gi|224092356|ref|XP_002309573.1| predicted protein [Populus trichocarpa]
 gi|222855549|gb|EEE93096.1| predicted protein [Populus trichocarpa]
          Length = 364

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRA 430
           +   L+ AD + IE R++   + +   ++       D+++   AR        V   +R 
Sbjct: 272 DNWLLLTADYSQIELRLMEHFSKDSTLIELPAKPHGDVFIMIAARWTGKPEDSVNSVERD 331

Query: 431 IGK--VMEL 437
             K   ME 
Sbjct: 332 QTKRLAMEF 340


>gi|323512097|gb|ADX87557.1| DNA polymerase [Vibrio phage ICP3_2009_A]
          Length = 678

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 159/561 (28%), Gaps = 128/561 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDPVMPQVLK 58
           M  L  D ET         G+    +       A+  D      + +         + L 
Sbjct: 1   MKLLLSDIET--------NGLLDTVDKFHC---AWTVDYFTGEWKAYRPWDFEQYIKDL- 48

Query: 59  EALENTDVTIVAHNS-YFERTVLKA----CFN--LDIPIHRWICTLVLARSNGLPSALKA 111
           EA       IV HN   ++   LK      F   L+IP    + TLV++R     S LK 
Sbjct: 49  EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLH--SNLKD 106

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP----NHREAWRLFGE----YCKG 163
                 L       GK              +              AW  F E    YCK 
Sbjct: 107 TDA--GLLRSGRITGK---LYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQ 161

Query: 164 DVTVTREIFKR--------------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           DV +T ++F++              L      E E  +L       GY  D   A  L  
Sbjct: 162 DVQITLKLFEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYA 221

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED---------------- 253
            V   R ++  EL   T+G     +   +   +L  ++G  L                  
Sbjct: 222 EVAGRRAEILMELTR-TFGSWYEPKGGTQ--PFLHPKSGKPLHKYPRVKYPKAGSIWTSA 278

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK---------LNTLVEAMNSDG-- 302
              T  + +   +   TP     FN   RA    VLK                ++ D   
Sbjct: 279 KKPTLAKTLYLKDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLS 338

Query: 303 --------------RLRGTLQFLGASRT-GRWS-GCVFPPQNLPRPSRSHEELDQIITHL 346
                         ++    ++L   +  G+ + G     +   +    H +++      
Sbjct: 339 LVIEHKLVPEEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMD-KGGYIHGQVNPNGAVT 397

Query: 347 PTSITSDPDPLQIISDCV------RSCVIA--------SEGKKLVVADLAGIEARVLAWM 392
             +  S P+  Q+ S         RS   A         +    V  D +G+E R L   
Sbjct: 398 GRATHSYPNLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVDASGLELRCLGHF 457

Query: 393 A---GEQWKLKAFETGEDLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
                +   +     G D++      A    +         R   K       Y  GA+ 
Sbjct: 458 MAKFDDGEYINTILNG-DIHTQNQIAA---GLPT-------RDNAKTFIYGFLYGAGAQK 506

Query: 448 FQKMASTTGLNLNTF-AHLVK 467
             ++    G       A L+K
Sbjct: 507 IGEIVGKFGEEGKKAGAELIK 527


>gi|262212153|gb|ACY35693.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212177|gb|ACY35705.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 25/183 (13%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER---------VKKAWRQKHSRVSELW 521
             + + +A +    + E   + A E  FI     R               Q +S +   W
Sbjct: 109 IRQAYIEAIDGPDKLLEAIKK-ASERGFIKALDGRKIIVDSPHKALNYCLQGNSAILAKW 167

Query: 522 NEL 524
             +
Sbjct: 168 WMV 170


>gi|229472259|gb|ACQ72644.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472389|gb|ACQ72709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472463|gb|ACQ72746.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472553|gb|ACQ72791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472573|gb|ACQ72801.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472587|gb|ACQ72808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472597|gb|ACQ72813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|47934836|gb|AAT39856.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 219

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 31/188 (16%)

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           T     +    + +   L    G     LT T    +   ++ +  +       +     
Sbjct: 60  TRLKEFNPSSRDHIAWILKTHCGWTPSSLTSTGKAVI---DETVLKEIGTDTALKFLTLL 116

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               +L  + E +N+  +L  T     +SR   +                        T 
Sbjct: 117 DLTKQLGMISEGVNAWQKLVTT-----SSRIHHYCSTN--------------------TA 151

Query: 346 LPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAF 402
                   P+  Q+ SD   R    A+ G+++V ADL+GIE R+LA      +  +    
Sbjct: 152 TFRCAHRTPNLGQVPSDERFRRLFTATPGQRMVAADLSGIELRMLAHYLARYDGGRYANI 211

Query: 403 ETGEDLYV 410
            T  D++ 
Sbjct: 212 LTTGDIHT 219


>gi|229472467|gb|ACQ72748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 228

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 61/177 (34%), Gaps = 43/177 (24%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS---SNKKLTPQAIQVFNNRMRASRS 286
             +    +++  +L L  G   E  TET    V           P+A  +    M   R 
Sbjct: 83  EFNLGSRQQIGRYLRL-FGWKPEKFTETGQAVVDEKTLETVTDIPEAQLIAEYLMVGKRI 141

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           A  ++ + ++A+  DGR+ G +  +GA                                 
Sbjct: 142 A--QVQSSLDAVEDDGRVHGQVNAIGA-------------------------------VT 168

Query: 347 PTSITSDPDPLQIISDCV------RSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                S P+  Q  +  V      R+C I  +G KLV  D +G+E R+LA    +  
Sbjct: 169 GRMTHSSPNMAQTPAVGVPYGYECRACWIVPDGHKLVGVDASGLELRMLASFMNDPT 225


>gi|229472453|gb|ACQ72741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDAATKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472213|gb|ACQ72621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKVGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472391|gb|ACQ72710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472257|gb|ACQ72643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLAHYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472237|gb|ACQ72633.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472591|gb|ACQ72810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262212131|gb|ACY35682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTLGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  + G  L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYGKPLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGR 142


>gi|229472527|gb|ACQ72778.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    A+ G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFRATPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472477|gb|ACQ72753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+++V ADL+G+E R LA      ++ + +     +D++ 
Sbjct: 1   PNLAQVPSDPEFRKLFRASPGQRMVGADLSGVELRCLAHYLARYDEGRYREVLLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    QK+  +   +L+      K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---QKIGLSYDKSLSPNKAKAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA +    + ++  + A E  ++  A ++ K      H  +
Sbjct: 109 IRQAYIDAIDGLDKLLKDIKQ-ASERGYV-RAIDKRKVLVDSSHKAL 153


>gi|262212225|gb|ACY35729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +   +         R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI-GIP--------RKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|322830259|gb|EFZ33345.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
           cruzi]
          Length = 274

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 87/316 (27%), Gaps = 79/316 (25%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK--------- 426
           ++ AD + +E  VLA ++ +   L+      D +    +         V +         
Sbjct: 1   MIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYENVVRKAKQERDPH 60

Query: 427 --DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   K       Y  G       A+TTGL  +    L+      + ++D   + R 
Sbjct: 61  YIQLRQQAKTFSFQRQYGAGIATI---ATTTGLTEHEVERLISAEE--QHYKDLSRYYRL 115

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                                          +E G   + R R 
Sbjct: 116 -------------------------------------------VMDCVEAGADRLLRLRT 132

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG-GKLTENIVQ 603
                +    +  ++L  P      +     ++       + + R   Y    L   IVQ
Sbjct: 133 LDAATWSPAMRRMILLTEPLH---YFVVPTGSKFDFAKDKKSIPRLKNYPVQGLAGEIVQ 189

Query: 604 AVSRDILAEGMMNATKAGYD----IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN---- 654
            +   I+        K  YD    +V TVHD +  +   +        +  +M+S     
Sbjct: 190 IMCGKIVR---RFYEKRNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVM 246

Query: 655 ----PSWAKGLPLKAE 666
               P     +P  A+
Sbjct: 247 SSLWPDVKLDVPFNAD 262


>gi|229472227|gb|ACQ72628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 17/144 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKL--KAFETGEDLY 409
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA  +A  +          G D++
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYEGGRYGDVLLNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
                +             R + K +  A  Y  G    +K+  +    L+      K  
Sbjct: 60  QENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGK 107

Query: 470 SAPEEWEDAENFCRWMQENHPEHA 493
              + + DA      +       A
Sbjct: 108 EIRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472261|gb|ACQ72645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472379|gb|ACQ72704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472605|gb|ACQ72817.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472221|gb|ACQ72625.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472277|gb|ACQ72653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472293|gb|ACQ72661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472375|gb|ACQ72702.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472445|gb|ACQ72737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472465|gb|ACQ72747.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472501|gb|ACQ72765.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472515|gb|ACQ72772.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472547|gb|ACQ72788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472579|gb|ACQ72804.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472179|gb|ACQ72604.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472339|gb|ACQ72684.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 17/144 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKL--KAFETGEDLY 409
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA  +A  +          G D++
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYEGGRYGDVLLNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
                +             R + K +  A  Y  G    +K+  +    L+      K  
Sbjct: 60  QENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGK 107

Query: 470 SAPEEWEDAENFCRWMQENHPEHA 493
              + + DA      +       A
Sbjct: 108 EIRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472243|gb|ACQ72636.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472435|gb|ACQ72732.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472469|gb|ACQ72749.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472473|gb|ACQ72751.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472481|gb|ACQ72755.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472489|gb|ACQ72759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472497|gb|ACQ72763.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472575|gb|ACQ72802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472269|gb|ACQ72649.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262342279|gb|ACY54650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 355 DPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVT 411
           +  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++  
Sbjct: 2   NLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQE 61

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +             R + K +  A  Y  G    +K+  +    L+  A   K    
Sbjct: 62  NADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKEI 109

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            + + DA    + + E     A +  +I     R
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|262212357|gb|ACY35795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 355 DPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVT 411
           +  Q+ SD   R    AS G  +V ADLAGIE R+LA      +  +        D++  
Sbjct: 2   NLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQE 61

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +             R + K +  A  Y  G    +K+  +    L+  A   K    
Sbjct: 62  NADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKEI 109

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            + + DA    + + E     A +  +I     R
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472541|gb|ACQ72785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GIGRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472365|gb|ACQ72697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  ++ ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMIGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4]
 gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4]
          Length = 678

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 159/561 (28%), Gaps = 128/561 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDPVMPQVLK 58
           M  L  D ET         G+    +       ++  D      + +         + L 
Sbjct: 1   MKLLISDIET--------NGLLDTVDKFHC---SWTVDYFTGEWKAYRPWDFEQYIKDL- 48

Query: 59  EALENTDVTIVAHNS-YFERTVLKA----CFN--LDIPIHRWICTLVLARSNGLPSALKA 111
           EA       IV HN   ++   LK      F   L+IP    + TLV++R     S LK 
Sbjct: 49  EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKRNVLDTLVMSRLLH--SNLKD 106

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP----NHREAWRLFGE----YCKG 163
                 L       GK              +              AW  F E    YCK 
Sbjct: 107 TDA--GLLRSGRITGK---LYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQ 161

Query: 164 DVTVTREIFKR--------------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           DV VT ++F++              L      E E  +L       GY  D   A  L  
Sbjct: 162 DVQVTLKLFEKFMSDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYA 221

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED---------------- 253
            V   R ++  EL   T+G     +   +   +L  ++G  L                  
Sbjct: 222 EVAGRRAEILMELTR-TFGSWYEPKGGTQ--PFLHPKSGKPLHKYPRVKYPKAGSIWTSA 278

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK---------LNTLVEAMNSDG-- 302
              T  + +   +   TP     FN   RA    VLK                ++ D   
Sbjct: 279 KKPTLAKTLYLKDAPFTPIQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLS 338

Query: 303 --------------RLRGTLQFLGASRT-GRWS-GCVFPPQNLPRPSRSHEELDQIITHL 346
                         ++    ++L   +  G+ + G     +   +    H +++      
Sbjct: 339 LVIEHKLVPEEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMD-KGGYIHGQVNPNGAVT 397

Query: 347 PTSITSDPDPLQIISDCV------RSCVIA--------SEGKKLVVADLAGIEARVLAWM 392
             +  S P+  Q+ S         RS   A         +    V  D +G+E R L   
Sbjct: 398 GRATHSYPNLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVDASGLELRCLGHF 457

Query: 393 A---GEQWKLKAFETGEDLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
                +   +     G D++      A    +         R   K       Y  GA+ 
Sbjct: 458 MAKFDDGEYINTILNG-DIHTQNQIAA---GLPT-------RDNAKTFIYGFLYGAGAQK 506

Query: 448 FQKMASTTGLNLNTF-AHLVK 467
             ++    G       A L+K
Sbjct: 507 IGEIVGKFGEEGKKAGAELIK 527


>gi|262342273|gb|ACY54647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342305|gb|ACY54663.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342315|gb|ACY54668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342327|gb|ACY54674.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342329|gb|ACY54675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARCDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472415|gb|ACQ72722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|262342247|gb|ACY54634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|229472247|gb|ACQ72638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S+   R    A+ G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSEAEFRKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    QK+  +    L+      K   
Sbjct: 61  ENADKI---------GISRKLVKTVTYAFLYGAGD---QKIGLSYDPQLSPTKARAKGAE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKRKARQYSYINAIDGR 143


>gi|229472521|gb|ACQ72775.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|262342285|gb|ACY54653.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARCDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212183|gb|ACY35708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G +            L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKAVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472411|gb|ACQ72720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472513|gb|ACQ72771.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472523|gb|ACQ72776.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|229472571|gb|ACQ72800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 14/143 (9%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPA 422
           RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++     +       
Sbjct: 7   RSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQVNADKI------ 60

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R   K +  A  Y        K+ ++    L       K +     + DA    
Sbjct: 61  ---GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGL 114

Query: 483 RWMQENHPEHAIEDLFIGTACER 505
             + E   + A E   I +   R
Sbjct: 115 EQLVEAVKKKAKEAGSIRSIDGR 137


>gi|229472301|gb|ACQ72665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRTLFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|229472191|gb|ACQ72610.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472285|gb|ACQ72657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472519|gb|ACQ72774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472529|gb|ACQ72779.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472531|gb|ACQ72780.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472549|gb|ACQ72789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472609|gb|ACQ72819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|229472439|gb|ACQ72734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L       K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLPEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|229472429|gb|ACQ72729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGCSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|296123324|ref|YP_003631102.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
 gi|296015664|gb|ADG68903.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
          Length = 686

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 24/214 (11%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P   R    L Q  +       S     Q I   +R  V+  EG+ L+ AD    E RV 
Sbjct: 420 PTGGRLRTRLSQNRSRTGRITASQYSC-QSIPLRLRPAVVVGEGRTLISADYRAFEWRVA 478

Query: 390 AWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A ++ +   L  F +   DLY    ++ F+     V+   R I K            +A 
Sbjct: 479 AALSQDSQLLTDFGSPDFDLYAFLVSQ-FDDLKHDVSSA-RPIIK--------GDSIQAL 528

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                     ++         S  E  +         +++    A+   F+ T   RV  
Sbjct: 529 YDF-------IDDGTASDGKTSVAEAIQRLFPRLMTWRQSVAAEALSSGFVTTPLGRVID 581

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               +     +      QA    I+   A + ++
Sbjct: 582 LTEGQDDLNRQ-----RQAVNNLIQAHAAELFKQ 610


>gi|196012971|ref|XP_002116347.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
 gi|190580938|gb|EDV21017.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
          Length = 1146

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/408 (13%), Positives = 113/408 (27%), Gaps = 60/408 (14%)

Query: 264  SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
            S   K T +   + +    A      +     +       +R   QF    + G      
Sbjct: 715  SDIAKRTVELKLMLSYWKNAHDRVRNQFVVYYKHDEIADSIRNHSQFKPLQKYGA----- 769

Query: 324  FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
                 LP  + +     + +     + ++       +   +++ + A  G   V AD+  
Sbjct: 770  ----ILPPVAPAGTVTRRAVEATWLTASNA--KANRVGSELKAMIRAPPGYHFVGADVDS 823

Query: 384  IEARVLAWMAGEQ-------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             E  + A  A  +                     G DL+  T                R 
Sbjct: 824  QELWIAALYADARFGRTHGCTAIGWMTLQGKKSQGTDLHSKTAETV---------GISRD 874

Query: 431  IGKVMELALGYQGGAKAFQKMASTTG--LNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
              K       Y  G    Q++       + L   +   K   A  +        R  ++ 
Sbjct: 875  QAKTFNYGRIYGAGLNYAQRLMRQFNPSMTLEDASDKAKILYASTKGITIYKLTRKGKKI 934

Query: 489  HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
              +   + +      +       +KH R  +L + +    +Q I   ++ +      + L
Sbjct: 935  LQKLDPDTILDDDWIDTTGHEILRKHLRGKKLDSYIKSKSKQWIGGSESEMFNALEAIAL 994

Query: 549  VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                K     IL     ++L  + VGN                 Y       +VQ+ + D
Sbjct: 995  SEKPKTP---ILECRISQALEPKVVGN----------------AYLPSRINWVVQSSAVD 1035

Query: 609  IL------AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             L         +           +++HDE+       D F A++   +
Sbjct: 1036 YLHLILVCMRWLFEKYNINGRFCISIHDEVRYLVKSEDRFRAALALQI 1083


>gi|262212349|gb|ACY35791.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G +            L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGDEKIGHSYDEL---LSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|262212089|gb|ACY35661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212167|gb|ACY35700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|229472525|gb|ACQ72777.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|262342213|gb|ACY54617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKAVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212197|gb|ACY35715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  +  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLFGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLPEAIKK-ASERGFIKALDGR 142


>gi|229472403|gb|ACQ72716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472503|gb|ACQ72766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRELFLPSPGQVMVAADLSGIELRMLSHFLARYDGGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSPKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA +    +  +    A E  FI     R
Sbjct: 109 IRAAYIDAIDGLDKLLASIKT-ASERGFIKAIDGR 142


>gi|262342309|gb|ACY54665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSGHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARCDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472169|gb|ACQ72599.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472187|gb|ACQ72608.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472201|gb|ACQ72615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472299|gb|ACQ72664.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472313|gb|ACQ72671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472317|gb|ACQ72673.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472413|gb|ACQ72721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|282554654|ref|YP_003347671.1| DNA polymerase [Klebsiella phage KP34]
 gi|262410487|gb|ACY66751.1| DNA polymerase [Klebsiella phage KP34]
          Length = 786

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 92/306 (30%), Gaps = 64/306 (20%)

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           ++  +L  G    S   + ++       G            R+++    L       +  
Sbjct: 372 RQARALQDGTPVYSTSTDAMEA--LARQGFEF--------CRLVNELGALEKDTGTYYLR 421

Query: 280 RMRASRSAVLKLNTLVEAM-----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                  +V K + +++ +     +  G +   L    A+ TGR SG     QNLPR   
Sbjct: 422 TEYNEDGSVKKTSGMLQYVIPQNPDGSGIIHHRLNTC-ATVTGRLSGSNPNLQNLPRDG- 479

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK--KLVVADLAGIEARVLAWM 392
                                     +  V+    +  G+  ++   D + +E  +    
Sbjct: 480 --------------------------TSRVKQMFTSRFGESGRITEVDYSALEVVMGCVH 513

Query: 393 AGEQWKLKAFETGEDLYVT--------TYARSFNV------APAQVTKDQRAIGKVMELA 438
            G++  L   + G D++          TY   +++         +  K QR   K    A
Sbjct: 514 TGDRKLLSLLQAGTDMHCYRLAFKEGKTYEEMYDLCHNADGPDYKYWKQQRTDIKPPSFA 573

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
             Y   A   + +A  TG  +      +   +  + + D   F   ++E       E   
Sbjct: 574 AQYGATA---KGIAFATGCTVEYAQSFLDNEA--KLFPDTIGFRAVVKEEVERTGAEGRL 628

Query: 499 IGTACE 504
                +
Sbjct: 629 YREQAD 634


>gi|229472483|gb|ACQ72756.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|262212187|gb|ACY35710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKAVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212057|gb|ACY35645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212063|gb|ACY35648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212099|gb|ACY35666.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212105|gb|ACY35669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G +            L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472443|gb|ACQ72736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|229472421|gb|ACQ72725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|229472193|gb|ACQ72611.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472303|gb|ACQ72666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|229472505|gb|ACQ72767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472409|gb|ACQ72719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|262212097|gb|ACY35665.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212109|gb|ACY35671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212119|gb|ACY35676.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212129|gb|ACY35681.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G +            L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472393|gb|ACQ72711.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 15/147 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R  +I   G KLV +DLAGIE RV A   G  ++ +       +D++ 
Sbjct: 1   PNLAQVSSDADCRELLITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y        K+ ++    L       K   
Sbjct: 61  VNADKI---------GISRRAVKTVTYAFLYGASD---VKIGTSYDSQLTEDQARKKGAE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDL 497
               + DA      + E     A  D 
Sbjct: 109 IRRAYLDAIPGLERLVEAVKTKAKVDR 135


>gi|229472405|gb|ACQ72717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|262342259|gb|ACY54640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212079|gb|ACY35656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212083|gb|ACY35658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 28/192 (14%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             + + +A +    + E   + A E  FI     R              + +  H+A   
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI------------IVDSPHKALNY 155

Query: 531 TIENGKAIIARK 542
            ++   AI+AR+
Sbjct: 156 CLQGNSAILARR 167


>gi|262212133|gb|ACY35683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 VRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|307207302|gb|EFN85052.1| DNA polymerase subunit gamma-1, mitochondrial [Harpegnathos saltator]
          Length = 1161

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 104/346 (30%), Gaps = 66/346 (19%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +P+   S     + +     + ++     + I   +RS V A  G  +V AD+   E  
Sbjct: 761  IIPQVVVSGTLTRRAVERTWMTASNA--SPERIGSELRSMVQAPPGYNIVGADVDSQELW 818

Query: 388  VL-----AWMAGE---------QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            +      A  +G             +     G D++  T                R   K
Sbjct: 819  IASMLGDAHHSGSIHGATPFGWMTLIGTKSNGTDMHSVTAKAV---------GISRDHAK 869

Query: 434  VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT------NSAPEEWEDAENFCRWMQE 487
            V+  A  Y  G K  +++      ++       K+          + +     F     E
Sbjct: 870  VINYARIYGAGQKFAEQLLKQFNPSMTDAEAAAKSRKMFTLTKGKKVFRLKAEFVNDNIE 929

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            + P  + +   I     +  +   Q+   V    + +    E+   + + +         
Sbjct: 930  DIPYTSFQAYQIAKLYGKTLQEMFQRSEWVGGSESAMFNRLEEIASSERPVTP------- 982

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                        L     R+L   +  N+ ++L                    +VQ+ + 
Sbjct: 983  -----------FLNSRLSRALEVTNTDNDDNFL--------------PTKINWVVQSGAV 1017

Query: 608  D---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D   ++   M    +      L+ HDE+    P   ++NA++  H+
Sbjct: 1018 DFLHLMLVSMRWLMRDNARFCLSFHDEVRYLVPSRYKYNAALAMHV 1063


>gi|262342145|gb|ACY54583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R     S G+ +V ADLAGIE R+L+      +Q +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFQPSPGQLMVGADLAGIELRMLSHFLARYDQGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRRLVKTVTYAFLYGAGD---EKIGHSYDKLLSSTAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + +   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLDAIKK-ASERGFIKALDGR 142


>gi|229472395|gb|ACQ72712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRELFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKDAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA +    +  +    A E  FI     R
Sbjct: 109 IRAAYIDAIDGLDKLLASIKT-ASERGFIKAIDGR 142


>gi|229472239|gb|ACQ72634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNSDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|262212221|gb|ACY35727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKV---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212135|gb|ACY35684.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342221|gb|ACY54621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472611|gb|ACQ72820.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+   AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      +   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSEKDATTEGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA              A
Sbjct: 109 IRQAYMDAIPGLEKRVTAVKSKA 131


>gi|47934728|gb|AAT39802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 34/172 (19%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++   L  + G      TE       + VL+S     P+A  +    M   
Sbjct: 57  EPFNPGSRQQIAERLIEK-GWKPTKRTEKGSVIVDEEVLASLD--YPEAKALAEYMMLQK 113

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R A  ++++ +EA+  DGR+ G +   GA  TGR +                        
Sbjct: 114 RIA--QIDSWLEAVGKDGRVHGRVITNGAV-TGRMTHMSPNM------------------ 152

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    P+         R      +G KLV  D AG+E R+LA    +Q
Sbjct: 153 ------AQVPNSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 198


>gi|262342229|gb|ACY54625.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472281|gb|ACQ72655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212143|gb|ACY35688.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212169|gb|ACY35701.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212175|gb|ACY35704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212179|gb|ACY35706.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212233|gb|ACY35733.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212337|gb|ACY35785.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342211|gb|ACY54616.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342215|gb|ACY54618.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342217|gb|ACY54619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342223|gb|ACY54622.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342231|gb|ACY54626.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342253|gb|ACY54637.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342255|gb|ACY54638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262342225|gb|ACY54623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472305|gb|ACQ72667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472551|gb|ACQ72790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212067|gb|ACY35650.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212073|gb|ACY35653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212087|gb|ACY35660.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212103|gb|ACY35668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212107|gb|ACY35670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212117|gb|ACY35675.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212149|gb|ACY35691.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212151|gb|ACY35692.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212163|gb|ACY35698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212185|gb|ACY35709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212199|gb|ACY35716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342209|gb|ACY54615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342219|gb|ACY54620.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342245|gb|ACY54633.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262342257|gb|ACY54639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262342207|gb|ACY54614.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212125|gb|ACY35679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472279|gb|ACQ72654.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRGLFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSRAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212155|gb|ACY35694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472267|gb|ACQ72648.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +          + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDK-PLAAIKKASERGFIEAIDGR 142


>gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 562

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 57/211 (27%), Gaps = 24/211 (11%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + + +     +++      L                ++L         L    ++  +  
Sbjct: 365 ITDPNRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYL-----LDTNEKSTDIEG 416

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLS 179
                G   I        +     +  P   E   LF  +    V     +  +L   L+
Sbjct: 417 IAAHYGYNDIQ--SDETVYGKGAKKGLPEEEE---LFFAHLARKVAAINALTPKLSQELA 471

Query: 180 SK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            K         E  L  +   +   G  VD      +         +++Q++     G  
Sbjct: 472 DKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-GEE 530

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
            +    ++L   LF + GL +    +    +
Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKQKLGTPQ 561


>gi|262342303|gb|ACY54662.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
               +             R + K +  A  Y  G
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAG 85


>gi|47934726|gb|AAT39801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 34/172 (19%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRAS 284
              +    +++   L  + G      TE       + VL+S     P+A  +    M   
Sbjct: 56  EPFNPGSRQQIAERLIEK-GWKPTKRTEKGSVIVDEEVLASLD--YPEAKALAEYMMLQK 112

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R A  ++++ +EA+  DGR+ G +   GA  TGR +                        
Sbjct: 113 RIA--QIDSWLEAVGKDGRVHGRVITNGAV-TGRMTHMSPNM------------------ 151

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    P+         R      +G KLV  D AG+E R+LA    +Q
Sbjct: 152 ------AQVPNSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 197


>gi|262212227|gb|ACY35730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V A+L+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAANLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     +   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKRGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIEAIDGR 142


>gi|229472569|gb|ACQ72799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 17/167 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAG-EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G+++V ADL+G+E R LA  +AG +  +       +D++ 
Sbjct: 1   PNLAQVPSDPEFRRLFRASPGQRMVGADLSGVELRCLAHYLAGYDGGRYGEILLNDDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    QK+  +   +L+      K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---QKIGLSYDKSLSPNKAKAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             + + DA +    + ++  + A E  ++  A ++ K      H  +
Sbjct: 109 IRQAYIDAIDGLDKLLKDIKQ-ASERGYV-RAIDKRKVLVDSSHKAL 153


>gi|262212205|gb|ACY35719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G +             ++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGDEKIGHSCDKL---RSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262342117|gb|ACY54569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R     S G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFQPSPGQVMVGADLAGIELRMLSHFLARYDGGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKQLSSSAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + +A +    + E   + A E  FI     R
Sbjct: 109 IRTAYVEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472383|gb|ACQ72706.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S+   R    A+ G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSEAEFRKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    QK+  +    L+      K   
Sbjct: 61  ENADKV---------GISRKLVKTVTYAFLYGAGD---QKIGLSYDPQLSPTKARAKGAE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGR 143


>gi|148807495|gb|ABR13552.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 35/171 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       ++VL        + I  +    + + 
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKTIDEYLMLQKRAA 104

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                L         DGR+ G +   GA  TGR +        +P               
Sbjct: 105 QIDSWL-----THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQIP--------------- 143

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                 S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 ----SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|229472369|gb|ACQ72699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 47/155 (30%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS    +V ADLAGIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDDQFRELFQASPSMVMVGADLAGIELRMLAHYLARYDEGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G         +    L++     K   
Sbjct: 61  ENADKI---------GISRRQVKTVTYAFLYGAGDNKI---GLSYDPQLSSKQATAKGEE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA      +       A     I     R
Sbjct: 109 IRAAYMDAVPGLEKLVTAVKHKAQSSGKIRAIDGR 143


>gi|229472175|gb|ACQ72602.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472207|gb|ACQ72618.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S G+ +V ADLAGIE R+L+      +Q +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPGQIMVGADLAGIELRMLSHFLAKYDQGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKQLSSSAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA +    + +   + A E  FI     R
Sbjct: 109 IRTAYVDAIDGLDKLLDAIKK-ASERGFIKALDGR 142


>gi|229472407|gb|ACQ72718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFIPTPGQIMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472229|gb|ACQ72629.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472329|gb|ACQ72679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S+   R    A+ G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSEAEFRKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    QK+  +    L+      K   
Sbjct: 61  ENADKI---------GISRKLVKTVTYAFLYGAGD---QKIGLSYDPQLSPTKARAKGAE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGR 143


>gi|229472197|gb|ACQ72613.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472287|gb|ACQ72658.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472311|gb|ACQ72670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472417|gb|ACQ72723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFIPTPGQIMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212389|gb|ACY35811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472183|gb|ACQ72606.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472275|gb|ACQ72652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472399|gb|ACQ72714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S G+ +V ADLAGIE R+L+      +Q +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPGQIMVGADLAGIELRMLSHFLAKYDQGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKQLSSSAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA +    + +   + A E  FI     R
Sbjct: 109 IRTAYVDAIDGLDKLLDAIKK-ASERGFIKALDGR 142


>gi|229472225|gb|ACQ72627.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472385|gb|ACQ72707.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S+   R    A+ G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSEAEFRKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    QK+  +    L+      K   
Sbjct: 61  ENADKI---------GISRKLVKTVTYAFLYGAGD---QKIGLSYDPQLSPTKARAKGAE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGR 143


>gi|229472171|gb|ACQ72600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
               +             R + K +  A  Y  G
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAG 85


>gi|229472471|gb|ACQ72750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S+   R    A+ G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSEAEFRKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    QK+  +    L+      K   
Sbjct: 61  ENADKI---------GISRKLVKTVTYAFLYGAGD---QKIGLSYDPQLSPTKARAKGAE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGR 143


>gi|262342233|gb|ACY54627.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 167

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262342143|gb|ACY54582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD  +R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRLRALFLPSPGQAMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|262212053|gb|ACY35643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 16/149 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFI 499
             + + +A +    + E   + A E  FI
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFI 136


>gi|262212139|gb|ACY35686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212161|gb|ACY35697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIIS-DCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSNHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|148807493|gb|ABR13551.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKLIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|148807502|gb|ABR13555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKLIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|262212217|gb|ACY35725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q  SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQGPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212207|gb|ACY35720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342263|gb|ACY54642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    +     + A E  FI     R
Sbjct: 109 VRQAYIEAIDVLDKL-LGAIKKASERGFIKALDGR 142


>gi|262212113|gb|ACY35673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    +     + A E  FI     R
Sbjct: 109 VRQAYIEAIDVLDKL-LGAIKKASERGFIKALDGR 142


>gi|262212189|gb|ACY35711.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342241|gb|ACY54631.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDELDKLLEAIKK-ASERGFIKALDGR 142


>gi|262342205|gb|ACY54613.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+       L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHGYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|33321977|gb|AAQ06707.1|AF496050_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 80

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF + GL +   T+T       VL+  K+ +P    +   R   S+     
Sbjct: 1   NSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPXVSDILEYRQ-ISKIQSTY 59

Query: 291 LNTLVEAMNS-DGRLRGTLQF 310
           +  L++ ++  DGR+      
Sbjct: 60  VKGLLDVIDERDGRIHTRYLQ 80


>gi|148807536|gb|ABR13571.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKLIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|229472181|gb|ACQ72605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GIFRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +     + A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGR 142


>gi|262212069|gb|ACY35651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRELVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAEKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|148807548|gb|ABR13576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKTIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|262342103|gb|ACY54562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342129|gb|ACY54575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G   V ADLAGIE R+ A      +  +        D++ 
Sbjct: 1   PNLAQVPSDLEFRKLFTASSGYVTVGADLAGIELRMPAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|148807507|gb|ABR13557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  T+     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTKKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|167600464|ref|YP_001671963.1| DNA polymerase [Pseudomonas phage LUZ19]
 gi|161168327|emb|CAP45491.1| DNA polymerase [Pseudomonas phage LUZ19]
          Length = 807

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 28/164 (17%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T    L + +K   +A ++        +       T     N DG ++ T         
Sbjct: 399 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITH--TYNKDGTIKDTKGM------ 450

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD---------CVRSC 367
                     Q +      H  L+   T      +S P+  Q+ S           V+  
Sbjct: 451 ---------LQYVDDDGIIHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEM 501

Query: 368 VIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            ++  G    +   D   +E  +LA ++ ++  L     G D++
Sbjct: 502 FVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH 545


>gi|33300830|ref|NP_877458.1| putative DNA directed DNA polymerase [Pseudomonas phage phiKMV]
 gi|195546662|ref|YP_002117743.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|195546724|ref|YP_002117802.1| putative exonuclease [Pseudomonas phage PT2]
 gi|33284801|emb|CAD44210.1| putative DNA directed DNA polymerase [Enterobacteria phage phiKMV]
 gi|158187623|gb|ABW23100.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|165880733|gb|ABY70988.1| putative exonuclease [Pseudomonas phage PT2]
          Length = 807

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 28/164 (17%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T    L + +K   +A ++        +       T     N DG ++ T         
Sbjct: 399 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITH--TYNKDGTIKDTKGM------ 450

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD---------CVRSC 367
                     Q +      H  L+   T      +S P+  Q+ S           V+  
Sbjct: 451 ---------LQYVDDDGIIHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEM 501

Query: 368 VIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            ++  G    +   D   +E  +LA ++ ++  L     G D++
Sbjct: 502 FVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH 545


>gi|332029311|gb|EGI69294.1| DNA polymerase subunit gamma-1, mitochondrial [Acromyrmex echinatior]
          Length = 1247

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 111/350 (31%), Gaps = 66/350 (18%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +P+   S     + +     + ++    ++ I   +R  V A  G  +V AD+   E  
Sbjct: 858  IIPQVVVSGTLTRRAVEPTWMTASNA--HVERIGSELRCMVQAPPGYNIVGADVDSQELW 915

Query: 388  VL-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A                +     G D++  T                R   KV
Sbjct: 916  IASIIGDAHYKRVHGATPFGWMTLIGTKSNGTDMHSVTAKAI---------GISRDHAKV 966

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +  A  Y  G K  Q++      ++       K+    +  +  + F            +
Sbjct: 967  INYARIYGAGQKFAQRLLKQFNPSMTDAEATSKSRKMFDLTKGKKVFW-----------L 1015

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +  F+              +  + ++     QA++    +GKA+   +   +   +M   
Sbjct: 1016 KPEFV--------------NDDLQDIAYTSSQAYKIAKLHGKAL---QDIFLKSEWMGGS 1058

Query: 555  KNNLILMLPSGRSLVYR-----DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD- 608
            ++ +   L       Y      D   +R+   T T     +  +       +VQ+ + D 
Sbjct: 1059 ESAMFNRLEQIAGSEYPVTPFLDARLSRALEITNT---DDDDKFLPTKINWVVQSGAVDF 1115

Query: 609  --ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS---MLYHLMTS 653
              ++   M    +      L+ HDE+    P   ++NA+    + +LMT 
Sbjct: 1116 LHLMLVSMRWLMRDNARFCLSFHDEVRYLIPFKYKYNAALAMHVTNLMTR 1165


>gi|225626345|ref|YP_002727841.1| DNA polymerase A [Pseudomonas phage phikF77]
 gi|225594854|emb|CAX63139.1| DNA polymerase A [Pseudomonas phage phikF77]
          Length = 808

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 28/164 (17%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T    L + +K   +A ++        +       T     N DG ++ T         
Sbjct: 400 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITH--TYNKDGTIKDTKGM------ 451

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD---------CVRSC 367
                     Q +      H  L+   T      +S P+  Q+ S           V+  
Sbjct: 452 ---------LQYVDDDGIIHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEM 502

Query: 368 VIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            ++  G    +   D   +E  +LA ++ ++  L     G D++
Sbjct: 503 FVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH 546


>gi|262212141|gb|ACY35687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G +            L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    +     + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKL-LGAIKKASERGFIKALDGR 142


>gi|262212411|gb|ACY35822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 354 PDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFETGEDLYVT 411
           P+  Q+ SD   R   +A+ G+ +VVADL+GIE R+LA  +A             D++  
Sbjct: 1   PNLAQVPSDLTYRRLFMATPGQVMVVADLSGIELRMLAHYLARYDTYFGDNLLNGDIHQI 60

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
              +             R + K +  A  Y  G 
Sbjct: 61  NADKI---------GISRKLVKTVCYAFLYGAGL 85


>gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum]
          Length = 158

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 24/162 (14%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSAL 109
             +P+ LK  LE+  V  VA N  ++  +LK      I    +  T++++      P+  
Sbjct: 10  DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLEPAPARH 65

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                + K         K++                N             Y   D  VT 
Sbjct: 66  GMDPLSEKFLGHTPIPYKDVA----------GSGKANVTFDLVDIDRATHYAAEDADVTL 115

Query: 170 EIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVA 202
            ++  L+P             E+ L  +   +  RG  VD  
Sbjct: 116 RLWLVLKPGCARGLTSVYERLERPLLPVLARMEARGITVDRQ 157


>gi|262342125|gb|ACY54573.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R     S G+ +V ADLAGIE R+L+      +Q +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFQPSPGQLMVGADLAGIELRMLSHFLARYDQGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSTAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + +   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLDAIKK-ASERGFIKALDGR 142


>gi|229472593|gb|ACQ72811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPA 422
           R    AS G  +V ADLAGIE R+LA      +  +        D++     +       
Sbjct: 11  RKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQENADKI------ 64

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G    +K+  +    L+  A   K     + + DA    
Sbjct: 65  ---GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGL 118

Query: 483 RWMQENHPEHA 493
             +       A
Sbjct: 119 EKLVTAVKSKA 129


>gi|262342133|gb|ACY54577.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R     S G+ +V ADLAGIE R+L+      +Q +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFQPSPGQLMVGADLAGIELRMLSHFLARYDQGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSTAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + +   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLDAIKK-ASERGFIKALDGR 142


>gi|47934818|gb|AAT39847.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 49/224 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHGPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 195


>gi|262212065|gb|ACY35649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212229|gb|ACY35731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTLGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKPLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGR 142


>gi|332800714|emb|CBY88554.1| hypothetical protein [Pantoea phage LIMEzero]
          Length = 814

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 75/255 (29%), Gaps = 42/255 (16%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL +        +     R +A +        L+E  + +G + G    +     
Sbjct: 402 STAGDVLEALAARKIPGVVEIAARAKAQKDLGTYY--LIEEEDEEGNVIGQSGMM----- 454

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEG 373
                     Q +      H  ++   T      +S P+   +       V+    +  G
Sbjct: 455 ----------QFIQPDGVVHHSINMTSTETTRLSSSRPNSQNLPRKGTSKVKQMFTSRFG 504

Query: 374 K--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT------ 425
              K+  AD + +E         ++   +A   G D++    ++  N     V       
Sbjct: 505 GEGKICEADYSALEVVGQCGFTKDKNLTQALLDGTDMHCMRLSQQLNEDYESVLLKAKKD 564

Query: 426 ---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                     + R   K    +  Y   A     +A +TG ++      + +  A   + 
Sbjct: 565 ESHPDHKRYDEMRTAIKPKAFSYQYGATA---MGIAYSTGCSVEEAQAFIDSEKAL--FP 619

Query: 477 DAENFCRWMQENHPE 491
           D E +   +     E
Sbjct: 620 DVEKWYDEVITPIVE 634


>gi|229472195|gb|ACQ72612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  + G  L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYGKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212123|gb|ACY35678.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRELVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262342089|gb|ACY54555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 30/188 (15%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS G  +  ADL+G+E R+LA      +  K        D++ 
Sbjct: 1   PNLAQVPSDYRFRELFTASPGMVMCGADLSGVELRMLAHYLAKHDGGKYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---------QKMASTTGLNLN- 460
               +             R+  K +  A  Y  G +            K A   G  +  
Sbjct: 61  VNADKI---------GISRSAVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKAKGKEIKQ 111

Query: 461 ---TFAHLVKTNSAPEEWEDAENFCRWMQENH-----PEHAIEDLFIGTACERVKKAWRQ 512
                   +    A  +      F R + +       P  A+  L  G++    K+    
Sbjct: 112 AYIEAIEGLDKLLADVKSASERGFIRAIDQRKILVDSPHKALNFLLQGSSACLAKRWLTI 171

Query: 513 KHSRVSEL 520
            H  + +L
Sbjct: 172 AHENIKQL 179


>gi|262212111|gb|ACY35672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342243|gb|ACY54632.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTLGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKPLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGR 142


>gi|262212095|gb|ACY35664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ +D   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPNDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G +            L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|269794009|ref|YP_003313464.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
 gi|269096194|gb|ACZ20630.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
          Length = 568

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 53/186 (28%), Gaps = 32/186 (17%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
             R                +     LQ +   +RS V +  G  LVVAD A +E R+LA 
Sbjct: 291 DGRFRPVYVPGGVVTGRWASDGGGALQ-LPHQIRSAVRSDPGWSLVVADAAQLEPRILAA 349

Query: 392 MAGEQWKLKAFETGEDLYV---TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           M+G+    +A     D+Y     T A            + R   K   L   Y G     
Sbjct: 350 MSGDAAMAEAGRA-ADMYEGMVATGAV-----------ETRQQAKFGMLGAMYGGTQGES 397

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            +M                       +  A            +  +   ++G +      
Sbjct: 398 GRM----------------LPRITRAFPQALALVEAAARAGEQGEVVSTWLGRSSPLPSA 441

Query: 509 AWRQKH 514
            WR  H
Sbjct: 442 EWRSAH 447


>gi|47934628|gb|AAT39752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 30/165 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
           + +    +++   L    G+  +  TE     V          P+A  V    M   R  
Sbjct: 49  IFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKR-- 105

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V ++++ ++A+  DGR+ G +   GA  TGR +                           
Sbjct: 106 VAQIDSWLKAVKDDGRVHGRVITNGAV-TGRMTHLSPNM--------------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                 P          RSC    EG  LV  D +G+E R+LA  
Sbjct: 144 ---AQVPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHY 185


>gi|159046195|ref|YP_001541867.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
 gi|157913954|gb|ABV95386.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
          Length = 516

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 96/342 (28%), Gaps = 52/342 (15%)

Query: 139 HECLYDRNKPNHREAWRLFGEYCK--GDVTVTRE-IFKRLEPLSSKEQELWYLDQTINDR 195
           ++ ++++  P          E         + R  +    E   + E  ++ L Q+    
Sbjct: 111 YKRMFNKGLPFEPGVASKAAEALAKMYLALLERAKLTGEAERFLTVEVPVYRLLQSAMAV 170

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      +    + +     +                         +  + LE   
Sbjct: 171 GIMVDRQRLSEMRAEAEHDYFTCLKNY---------------------SAKHDMPLETPN 209

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +  +  L ++          +       +         ++A ++  R+ G+L       
Sbjct: 210 RSALEEKLRADGFELDDVSIEYLLEYVPHQRDFGSDTIALQAADTARRVLGSLALS---- 265

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
                            +     LD   +         P  LQ +S   R  +   EG +
Sbjct: 266 ----------------TTIMRPVLDVFGSRTSRIHLRSP-SLQNMSKKYRGIIAGREGAE 308

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L   D    E  ++A ++ +   +K +  G D+Y         +         R   K +
Sbjct: 309 LSYVDFDQYEVGIMAALSKDCELMKLYAAG-DMYDLFATTHLGL------SGNRKAAKQL 361

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            L+  Y    KA    A + G++     +     +  E W+ 
Sbjct: 362 FLSYAYGMSKKALIDAAVSLGVDRTRAKNAFGLFAQYETWKR 403


>gi|262212235|gb|ACY35734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +     Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYEFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472255|gb|ACQ72642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R    AS    +V ADLAGIE R+LA      ++ +        D++ 
Sbjct: 1   PNLAQVPSDAEFRKLFRASPTLVMVGADLAGIELRMLAHYLARYDEGRYADVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G     K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRKQVKTVTYAFLYGAGD---AKLGRSYDPQLSEKDAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA 131


>gi|262212301|gb|ACY35767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRILVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|322796178|gb|EFZ18754.1| hypothetical protein SINV_08354 [Solenopsis invicta]
          Length = 1253

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 100/346 (28%), Gaps = 56/346 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +P+   S     + +     + ++    ++ I   +R  + A  G  +V AD+   E  
Sbjct: 855  IIPQVVVSGTLTRRAVEPTWMTASNA--HVERIGSELRCMIQAPPGYNIVGADVDSQELW 912

Query: 388  VL-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A                +     G D++  T                R   KV
Sbjct: 913  IASVIGDAHYKRIHGATPFGWMTLIGTKSNGTDMHSVTAKAI---------GISRDHAKV 963

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +  A  Y  G K  +++      ++     + K+          +   R   E   +   
Sbjct: 964  INYARIYGAGQKFAERLLKQFNPSMTDAEAISKSRKMF-ALTKGKKIYRLKTEFINDDLQ 1022

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
               +  +    + K   +    + +    +  + E  + N    IA     +      + 
Sbjct: 1023 NISYTSSQAYHIAKLHGKGLQDIFQKSEWIDGS-ESAMFNRLEQIAGSEHPITPFLNARL 1081

Query: 555  KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILA 611
               L +                    NT       +  +       +VQ+ + D   ++ 
Sbjct: 1082 SRALEIT-------------------NTDD-----DDKFLPTKINWVVQSGAVDFLHLML 1117

Query: 612  EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS---MLYHLMTSN 654
              M    K      L+ HDE+    P   ++NA+    + +LMT  
Sbjct: 1118 VSMRWLMKDNARFCLSFHDEVRYLVPSRYKYNAALAMHVTNLMTRA 1163


>gi|148807524|gb|ABR13565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPEAKTIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|320541061|ref|ZP_08040484.1| hypothetical protein SSYM_0208 [Serratia symbiotica str. Tucson]
 gi|320028876|gb|EFW11132.1| hypothetical protein SSYM_0208 [Serratia symbiotica str. Tucson]
          Length = 54

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL 44
            L++D ET S I +       YAE+V VILF++  D  PV++
Sbjct: 3  KILWLDLETYSEIPIKNA-THTYAENVDVILFSWAIDKDPVQV 44


>gi|262212157|gb|ACY35695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKA-FETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+  +A       A      D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGCYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    +     + A E  FI     R
Sbjct: 109 VRQAYIEAIDVLDKL-LGAIKKASERGFIKALDGR 142


>gi|262342151|gb|ACY54586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTNAFLYGAGD---EKIGHSYDKPLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLE-VIKKASERGFIKALDGR 142


>gi|148807526|gb|ABR13566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPEAKTIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|229472251|gb|ACQ72640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ ++   R    A+ G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPNEAEFRKLFTATPGMVMVGADLAGIELRMLAHYLARFDGGRYGDVLINGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    QK+  +    L+      K   
Sbjct: 61  ENADKI---------GISRKLVKTVTYAFLYGAGD---QKIGLSYDPQLSPTKARAKGAE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGR 143


>gi|262212219|gb|ACY35726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAG-EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+  +A  +  +        D++ 
Sbjct: 1   PNLAQVPSDHGFRELFIPTPGQVMVGADLAGIELRMLSHSLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262342237|gb|ACY54629.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 16/154 (10%)

Query: 355 DPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVT 411
           +  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++  
Sbjct: 3   NLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQV 62

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +             R + K +  A  Y  G +            L++ A   K    
Sbjct: 63  NADKI---------GISRKLVKTVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKEI 110

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            + + +A +    + E   + A E  FI     R
Sbjct: 111 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 143


>gi|262342227|gb|ACY54624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD  +R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRLRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYAVILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + + +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVRTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|47934782|gb|AAT39829.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934784|gb|AAT39830.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934796|gb|AAT39836.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934804|gb|AAT39840.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934820|gb|AAT39848.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 49/224 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 195


>gi|159038749|ref|YP_001538002.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
 gi|157917584|gb|ABV99011.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
          Length = 566

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 55/175 (31%), Gaps = 26/175 (14%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R   E            T     LQ I   +R  V+A  G  LVVAD   +E RVLA
Sbjct: 300 RDGRFRPEYVPGGVVSGRWATRGGGALQ-IPKVIRRAVVADPGWTLVVADAGQLEPRVLA 358

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G+     A   G+         +F           RA  KV  L   Y         
Sbjct: 359 AVSGDTRLAAAAGAGDLY-AALARDAFGGD--------RARAKVALLGAMYG-------- 401

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               TG +      +++ N     +  A  +      +     +   ++G  C  
Sbjct: 402 ---QTGGSAAPALEVLRRN-----YPAAFAYVESAARSGESGGLVRSWLGRTCPP 448


>gi|47934626|gb|AAT39751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 200

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 49/224 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 195


>gi|189236910|ref|XP_968888.2| PREDICTED: similar to DNA polymerase subunit gamma 1, mitochondrial
            [Tribolium castaneum]
          Length = 1093

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 92/340 (27%), Gaps = 57/340 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +P+         + +     + ++       +   +R+ V A  G  ++ AD+   E  
Sbjct: 710  IIPQVVVCGTLTRRAVEPTWMTASNA--RPDRVGSELRAMVQAPPGYNIIGADVDSQELW 767

Query: 388  VLAWMAGEQ--------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            + A + G+                         D++  T                R   K
Sbjct: 768  I-ASIIGDADRARLHGATPFGWMTLSGTKADSTDMHSVTAKAV---------GISRDHAK 817

Query: 434  VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            V+  A  Y  G    +++      +++      K           +   R  +E   E+ 
Sbjct: 818  VINYARIYGAGQNFAERLLKQFNPSMSDGEAKTKAAKMF-ALTKGKRIYRLKKEFVLEYY 876

Query: 494  IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             ++     A E  K   R+                E  + N    IA  +         +
Sbjct: 877  DQNYSHWQAFEIAKTWNRRIDDMFERPKWV--GGTESAMFNRLESIATSQEPRTPFLNGR 934

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---IL 610
                L   L S    +   +                           +VQ+ + D   ++
Sbjct: 935  LSRALEPKLSSDDRFLPTRIN------------W-------------VVQSGAADFLHLM 969

Query: 611  AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
               M           L+ HDE+    P+  ++  ++  H+
Sbjct: 970  LVCMRWIMGENARFCLSFHDEVRYLVPERFKYQGALAMHV 1009


>gi|262212165|gb|ACY35699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V AD AGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADPAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIRALDGR 142


>gi|262342251|gb|ACY54636.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAG-EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+  +A  +  +        D++ 
Sbjct: 1   PNLAQVPSDHGFRELFIPTPGQVMVGADLAGIELRMLSHSLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212365|gb|ACY35799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTNAFLYGAGD---EKIGHSYDKPLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E     A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLE-VIRKASERGFIKALDGR 142


>gi|229472539|gb|ACQ72784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKEKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|148807583|gb|ABR13592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGATIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 68/238 (28%), Gaps = 43/238 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             L +D ET     +          D  ++  +F   ++         D      + +  
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           +   EN +   V  N  ++  VL+   N    +   +   ++A     P     +  + E
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGAVVKGPLFDTMIAHYVLQPELRHGMDYLAE 483

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   +  ++E           +       R+             Y   D  +T ++  
Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADITLKLKN 531

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            LE    +          E  L  +   I   G  +D       +     +  ++++E
Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKE 589


>gi|229472537|gb|ACQ72783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+ + AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALLTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGN---KKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA 131


>gi|302544332|ref|ZP_07296674.1| putative DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302461950|gb|EFL25043.1| putative DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 241

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G +LVVAD   +E RVLA ++ ++  ++   TG DLY     R+F          +
Sbjct: 1   VADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGTGRDLYAELSDRAF--------AGR 52

Query: 429 RAIGKVMELALGYQGGAKAFQK 450
           R   K+  L   Y   +    K
Sbjct: 53  RDQAKLALLGAVYGQTSGDGLK 74


>gi|270006334|gb|EFA02782.1| hypothetical protein TcasGA2_TC008519 [Tribolium castaneum]
          Length = 1050

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 92/340 (27%), Gaps = 57/340 (16%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + +     + ++       +   +R+ V A  G  ++ AD+   E  
Sbjct: 667 IIPQVVVCGTLTRRAVEPTWMTASNA--RPDRVGSELRAMVQAPPGYNIIGADVDSQELW 724

Query: 388 VLAWMAGEQ--------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           + A + G+                         D++  T                R   K
Sbjct: 725 I-ASIIGDADRARLHGATPFGWMTLSGTKADSTDMHSVTAKAV---------GISRDHAK 774

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           V+  A  Y  G    +++      +++      K           +   R  +E   E+ 
Sbjct: 775 VINYARIYGAGQNFAERLLKQFNPSMSDGEAKTKAAKMF-ALTKGKRIYRLKKEFVLEYY 833

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
            ++     A E  K   R+                E  + N    IA  +         +
Sbjct: 834 DQNYSHWQAFEIAKTWNRRIDDMFERPKWV--GGTESAMFNRLESIATSQEPRTPFLNGR 891

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---IL 610
               L   L S    +   +                           +VQ+ + D   ++
Sbjct: 892 LSRALEPKLSSDDRFLPTRIN------------W-------------VVQSGAADFLHLM 926

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              M           L+ HDE+    P+  ++  ++  H+
Sbjct: 927 LVCMRWIMGENARFCLSFHDEVRYLVPERFKYQGALAMHV 966


>gi|47934792|gb|AAT39834.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934822|gb|AAT39849.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 49/224 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 195


>gi|262342261|gb|ACY54641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 355 DPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVT 411
           +  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++  
Sbjct: 1   NLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQV 60

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +             R + K +  A  Y  G    +K+  +    L++ A   K    
Sbjct: 61  NADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKEI 108

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            + + +A +    + E   + A E  FI     R
Sbjct: 109 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 141


>gi|148807571|gb|ABR13586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEEVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|148807500|gb|ABR13554.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807556|gb|ABR13580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPEAKTIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KLV  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GKECRSFWCVPEGHKLVGIDASGLELRMLAHYMRDE 185


>gi|262212333|gb|ACY35783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFILTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212115|gb|ACY35674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIIS-DCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSNSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAEKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472361|gb|ACQ72695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+ + AS G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSDLAFRALLTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---EKIGLSYDPQLSEKDATTKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             + + DA      +       A
Sbjct: 109 IRQAYMDAIPGLEKLVTAVRSKA 131


>gi|262342149|gb|ACY54585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 29/193 (15%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I +   KLV +DLAGIE R+ A      +  +       +D++ 
Sbjct: 1   PNLAQVSSDKDCRELFITNPTWKLVDSDLAGIELRLFAHYLARYDGGRYAKILLEQDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +     Y GG           GL+ +    L K   
Sbjct: 61  VNAEKI---------GISRRQVKTITYCFLYGGGD-------QKLGLSFDNMLPLDKAKK 104

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
              E   A        +  P   +EDL   T     + + R    R  ++  +       
Sbjct: 105 KGAEIRRA------YMDAIP--GLEDLVKDTRRVAERGSIRAIDKR--QIIVDKEHKALN 154

Query: 531 TIENGKAIIARKR 543
            +  G A +  KR
Sbjct: 155 CLLQGSAAVVAKR 167


>gi|47934794|gb|AAT39835.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 47  EFNVGSRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA 105

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 106 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 144

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 145 --SVSAPY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 186


>gi|148807569|gb|ABR13585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|148807532|gb|ABR13569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDVPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|47934824|gb|AAT39850.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 49/224 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQVTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 195


>gi|148807558|gb|ABR13581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRLLAHYMRDE 185


>gi|262212147|gb|ACY35690.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y       +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGADD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212201|gb|ACY35717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTLGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSHDKPLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGR 142


>gi|148807497|gb|ABR13553.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807509|gb|ABR13558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807517|gb|ABR13562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807522|gb|ABR13564.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807550|gb|ABR13577.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807573|gb|ABR13587.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807587|gb|ABR13594.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807591|gb|ABR13595.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807593|gb|ABR13596.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807595|gb|ABR13597.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|148807554|gb|ABR13579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAEMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|262342199|gb|ACY54610.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y       +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGADD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212085|gb|ACY35659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +   ++   V        K +  A  Y  G +            L++ A   K   
Sbjct: 61  VNADKI-GISHKLV--------KTVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|148807552|gb|ABR13578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 35/171 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       +RVL       P+A  ++   M   R
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNERVLEGID--IPEAKMIYEYLMLQKR 102

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           +A  ++++ +     DGR+ G +   GA  TGR +        +P               
Sbjct: 103 AA--QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------- 143

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                 S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 ----SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|148807585|gb|ABR13593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  V+   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMVYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|197935871|ref|YP_002213707.1| DNA polymerase [Ralstonia phage RSB1]
 gi|197927034|dbj|BAG70376.1| DNA polymerase [Ralstonia phage RSB1]
          Length = 815

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 99/344 (28%), Gaps = 49/344 (14%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDC---VRSCVIASEGK--KLVVADLAGIEA 386
               H  L+   T      +SDP+   I        ++   +  G   K++ +D + +E 
Sbjct: 448 NDIVHHTLNMCRTVTARLSSSDPNLQNIPKGQKSEAKTMFESRFGADGKIIQSDFSSLEV 507

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
            V A +   +  +     G D++    A           K++R                 
Sbjct: 508 YVQAMLTLCKQLIADLAAGIDMHCMRLAA----------KEKREY--------------D 543

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               +     + ++                 + +F R         A          + +
Sbjct: 544 EVLMLCKKGKVGVDLTQEERDEWDYKRTGAKSFSFQRAYGAGVAAIAAGTGIPLEEVQAL 603

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             A   ++  + E +    +     I   +           +  +K        + P G+
Sbjct: 604 ADAEDARYPEIGEYF----EMKADEIRETRTPTLDIVEHPEIKGLKCQLGKGYSVTPDGK 659

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--- 623
              YR+  + +  +     +     T   ++    VQ    +++   M  A +A Y    
Sbjct: 660 RYSYRESPSPKYMIERGRPRTGFVPT---QIKNYEVQGTGGEVMKAAMWLAVRAFYYYKN 716

Query: 624 ------IVLTVHDEIVCETPDTDEFNASMLYH-LM---TSNPSW 657
                 +V TVHD    +   T    A+ L H  M   ++   W
Sbjct: 717 FKGLALLVNTVHDAQYVDAHKTVAVKAAGLLHACMVEASTLIEW 760


>gi|148807597|gb|ABR13598.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|148807489|gb|ABR13549.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             +++  +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDPWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|47934790|gb|AAT39833.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 49/224 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +                                
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNL------------------------AQ 151

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 152 VPSVPAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 195


>gi|148807515|gb|ABR13561.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWLTR-EKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|148807601|gb|ABR13600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAEMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|229472535|gb|ACQ72782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 354 PDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+   D  R    A+ G  +V ADLAGIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPHGDEFRKLFRATPGMVMVGADLAGIELRMLAHYLARWDGGRYGDVLINGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    QK+  +   +L+      K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---QKIGLSYDQSLSADKAKKKGQE 108

Query: 471 APEEWEDAENFCRWMQENHPEHA 493
             +   DA    + + E   + A
Sbjct: 109 IRQAHMDAIPGLQDLVEATKKAA 131


>gi|229472185|gb|ACQ72607.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472199|gb|ACQ72614.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472315|gb|ACQ72672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342203|gb|ACY54612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKDAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|148807560|gb|ABR13582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 35/171 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       ++VL       P+A  ++   M   R
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIANEKVLEGID--IPEAKMIYEYLMLQKR 102

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           +A  ++++ +     DGR+ G +   GA  TGR +        +P               
Sbjct: 103 AA--QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP--------------- 143

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                 S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 ----SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|262342113|gb|ACY54567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I S+G  +  ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDGRFRELFIPSKGLVMCGADLSGIELRMLSHYLARFDGGRYAEILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R   K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKQVKTVTYAFLYGAGD---EKIGYSYDAQLSSTAAKRKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +  A +    +     + A E  F+ +   R
Sbjct: 109 IRSAYVSAVDGLGDLLTAVAK-AAERGFVKSIDGR 142


>gi|262342195|gb|ACY54608.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 16/149 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y       +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGADD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFI 499
             + + +A +    + E   + A E  FI
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFI 136


>gi|308071862|emb|CBW54783.1| putative DNA polymerase A [Pantoea phage LIMElight]
          Length = 778

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 112/356 (31%), Gaps = 86/356 (24%)

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + D  V +  +         E++L+Y    I+     +D    H   +  D       + 
Sbjct: 327 REDTDVEKLKW---------EEDLFYFPGHID-----IDRLPGHVAEKYGDRGE---FRG 369

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
            ++L  G    S   + +K       GL L+  T       L+S +K T      +  R 
Sbjct: 370 AQTLPDGSPVFSTSGDAMK-------GLALQGFTSAKLVNELASLEKDTG----TYYLRT 418

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP----SRSHE 337
             ++   +K            +L G LQ+                  +P         H 
Sbjct: 419 EYNKDGSVK------------KLSGMLQY-----------------VIPMDDDGSGIIHH 449

Query: 338 ELDQIITHLPTSITSDPDPLQIISD---CVRSCVIASEGK--KLVVADLAGIEARVLAWM 392
            L+   T      + +P+   +  D    V+    +  G   +++  D + +E  +    
Sbjct: 450 RLNTCATITTRLSSGNPNLQNLPRDGTSKVKQMFTSRFGSAGRIIEVDYSALEVVMGCVH 509

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---------------KDQRAIGKVMEL 437
            G+   L   +TG D++    A   N+    V                K +R   K    
Sbjct: 510 TGDLKLLHLLQTGTDMHCYRLAFRHNMPYEDVLKLAVEDEDGPDYKMWKQRRTDIKPPSF 569

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           A  Y   A   + +A  TGL+L      +   +  + + D+  F   +++      
Sbjct: 570 AAQYGATA---KGIAFATGLSLEFCQEFLDNEA--KLFPDSIKFRDVIRKEVERTG 620


>gi|307689099|ref|ZP_07631545.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 68

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 574 GNNRSYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
           G + +Y     T++  R  + G K  ENIVQA+SRDIL   +   +     IV  
Sbjct: 16  GESITYEGVDSTKKWGRLESCGPKFVENIVQAISRDILINALYTCSH--CFIVGH 68


>gi|262342249|gb|ACY54635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472517|gb|ACQ72773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 15/145 (10%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVA 420
             R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +     
Sbjct: 8   RFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI---- 63

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                   R + K +  A  Y  G    +K+  +    L++     K     E + DA +
Sbjct: 64  -----GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKEIREAYIDAID 115

Query: 481 FCRWMQENHPEHAIEDLFIGTACER 505
               +       A E  FI     R
Sbjct: 116 GLDKLLAAIKT-ASERGFIKAIDGR 139


>gi|262342321|gb|ACY54671.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 355 DPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKL--KAFETGEDLYV 410
           +  Q+ SD   R    AS G  +V ADLAGIE R+LA  +A             G  ++ 
Sbjct: 2   NLAQVPSDLEFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGG-IHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +     +  A   K   
Sbjct: 61  ENADKI---------GISRRLVKTVTYAFLYGAGD---KKIGLSYDPQPSDKAATAKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + DA    + + E     A +  +I     R
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGR 143


>gi|229472397|gb|ACQ72713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 VRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|77118186|ref|YP_338108.1| DNA polymerase [Enterobacteria phage K1F]
 gi|72527930|gb|AAZ72982.1| DNA polymerase [Enterobacteria phage K1F]
 gi|84095014|emb|CAJ29370.2| gp5 protein [Enterobacteria phage K1F]
          Length = 723

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 77/272 (28%), Gaps = 39/272 (14%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----------RVLSSNKKLTPQAIQVFN 278
           +  +    + L   L    G    D T+T             ++  +  +   + ++ + 
Sbjct: 337 VEFNPGSGDHLAKVLMER-GWEPVDFTDTGKPVVDDETLEHVKLPDAEAQACVELVREYL 395

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS-HE 337
              +    A    N  ++ +  DGR+ G++   GA  TGR +        +P       E
Sbjct: 396 VVQKRIGQAAEGKNAWLKLVGPDGRMHGSINPCGAV-TGRATHSSPNMAQVPANGAPYGE 454

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--E 395
                           PDP                    V  D +G+E R L   A   +
Sbjct: 455 TCRGAFGAAWNKTDGKPDP-----------------WIQVGVDASGLELRCLGNRAAPFD 497

Query: 396 QWKLKAFETGEDLY---VTTYARSFNVAPAQVTKDQ---RAIGKVMELALGYQGGAKAFQ 449
                      D++         + NV   +   D    R   K    A  Y  GA    
Sbjct: 498 GGAYAKTVVEGDIHWANAVNAGLAPNVPRDKSNHDHDAFRNNAKTFIYAFLYGAGAAKIG 557

Query: 450 KMASTTGLNLNT-FAHLVKTNSAPEEWEDAEN 480
            +        +      ++   A ++  +A +
Sbjct: 558 LIVGGGKKEGSALMKKFIEGTPAIKDLREAVS 589


>gi|262342119|gb|ACY54570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472233|gb|ACQ72631.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342135|gb|ACY54578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212173|gb|ACY35703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 15/145 (10%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVA 420
             R   I + G+ +V ADLAGIE R+L+      +  +        D++     +     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI---- 66

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                   R + K +  A  Y  G +            L++ A   K     + + +A +
Sbjct: 67  -----GISRKLVKTVTYAFLYGAGDEKIGHSCDKL---LSSQAAKKKGKEIRQAYIEAID 118

Query: 481 FCRWMQENHPEHAIEDLFIGTACER 505
               + E   + A E  FI     R
Sbjct: 119 GLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472307|gb|ACQ72668.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|148807491|gb|ABR13550.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT--PQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIGIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|262342265|gb|ACY54643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 18/171 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER--VKKAWRQKHSRVSE 519
             + + +A +    + E   + A E  FI     R  +  + R+  +   +
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVDSPRKALNYCLQ 158


>gi|262212369|gb|ACY35801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRALSLPSPGQVMVAADLSGIELRMLSHFPAKYDDGRYAGILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             E + DA +    +       A E  FI     R
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 142


>gi|229472177|gb|ACQ72603.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472327|gb|ACQ72678.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472427|gb|ACQ72728.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342091|gb|ACY54556.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342095|gb|ACY54558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342101|gb|ACY54561.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342121|gb|ACY54571.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342139|gb|ACY54580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|281341789|gb|EFB17373.1| hypothetical protein PANDA_008249 [Ailuropoda melanoleuca]
          Length = 1214

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 96/350 (27%), Gaps = 57/350 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQ--IISDCVRSCVIASEGKKLVVADLAGIE 385
             LP+   +     + +     +   D  PLQ   +   +++ V A  G  LV AD+   E
Sbjct: 818  ILPQVVTAGTITRRAVEPTWLTARPDLPPLQPDRVGSELKAMVQAPPGYVLVGADVDSQE 877

Query: 386  ARVLAWMAGEQ------------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAI 431
              + A + G+             W         G DL+  T A              R  
Sbjct: 878  LWIAAVL-GDAHFARMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREH 927

Query: 432  GKVMELALGYQGGAKAFQKMA-----STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             K+      Y  G    +++        T       A  +   +         +   W+ 
Sbjct: 928  AKIFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLV 987

Query: 487  ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                           + + ++K  R+   +    W +     E+    G           
Sbjct: 988  RELHLPVDRTEDGWVSLQDLRKIQREASRK--SRWKKWEVVAERAWMGGTESEM------ 1039

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++  +   P    L  R                +R           +VQ+ +
Sbjct: 1040 ----FNKLESIAMSDTPCTPVLGCRISRALEPSAVQGEFMTSR--------VNWVVQSSA 1087

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1088 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1137


>gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
 gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
          Length = 204

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 23/173 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + + +CV        D   +L         P VLK  L +  VT + H +
Sbjct: 22  VDTETLGLEPHRDRLCV--VQISRGDGEADLVQIAKGGPEPVVLKRVLTDPAVTKIFHFA 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIA 131
            F+  VL      +  PI+       L+R+      L   V E L +   K ++  +  A
Sbjct: 80  RFDLAVLFHRLGVMPGPIYCTKVASRLSRTYTDRHGLKDLVRELLGIEISKQQQSSDWGA 139

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                                      EY   DV     +  +L+ + ++E+ 
Sbjct: 140 ETLSPAQ-------------------IEYAASDVLHLHALRAKLDAMLAREER 173


>gi|17380447|sp|P54099|DPOG1_MOUSE RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|9082197|gb|AAF82772.1|AF268975_1 mitochondrial DNA polymerase gamma [Mus musculus]
          Length = 1239

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 103/349 (29%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 819  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 876

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 877  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 927

Query: 435  MELALGYQGGAKAFQKMASTTG--LNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G    +++       L     A         T         A+      Q 
Sbjct: 928  FNYGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQL 987

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            N P    ED ++     +  +  R++ SR S  W +   A E+    G       +  + 
Sbjct: 988  NLPVDRTEDGWVSL---QDLRMIRREASRKSR-WKKWEVAAERAWTGGTESEMFNK--LE 1041

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
             + M       +L     R+L    V         T+R               +VQ+ + 
Sbjct: 1042 SIAMSDTPRTPVLGCCISRALEPSVVQGEF----ITSR------------VNWVVQSSAV 1085

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D + A++   +
Sbjct: 1086 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1134


>gi|291335807|gb|ADD95407.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C849]
          Length = 124

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPA 422
           R    AS G  +V ADLAGIE R+LA   G  +  +        D++     +       
Sbjct: 11  RELFTASPGMTMVGADLAGIELRMLAHYLGRYDGGRYADILLNGDIHQVNADKI------ 64

Query: 423 QVTKDQRAIGKVMELALGYQGG 444
                 R   K +  A  Y  G
Sbjct: 65  ---GISRRQVKTVSYAYLYGAG 83


>gi|262212077|gb|ACY35655.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +  ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMAGADLAGIELRMLSHFLARYDNGRYADILLNGDIHR 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKDAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|148807562|gb|ABR13583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDVPEAKTIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +    ++ TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVI-TNSAVTGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KLV  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GKECRSFWCVPEGHKLVGIDASGLELRMLAHYMRDE 185


>gi|148807513|gb|ABR13560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPGAKLIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +  +  DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWLTHV-KDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G++ R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLKLRMLAHYMRDE 185


>gi|73951465|ref|XP_545850.2| PREDICTED: similar to DNA polymerase gamma subunit 1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Canis
            familiaris]
          Length = 1234

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 93/349 (26%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G   V AD+   E  
Sbjct: 841  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVFVGADVDSQELW 898

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 899  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 949

Query: 435  MELALGYQGGA--KAFQKMASTTGLNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G        M     L     A         T          E      + 
Sbjct: 950  FNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSEEGEWLVREL 1009

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            + P    ED     + + ++K  R+   +    W +   A E+    G            
Sbjct: 1010 DLPVDRTEDG--WVSLQDLRKIQREASRK--SRWKKWEVAAERAWRGGTESEM------- 1058

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                 K ++  +   P    L  R                +R           +VQ+ + 
Sbjct: 1059 ---FNKLESIAMSDTPCTPVLGCRISRALEPSAVKGEFMTSR--------VNWVVQSSAV 1107

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D + A++   +
Sbjct: 1108 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1156


>gi|262212193|gb|ACY35713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 15/145 (10%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVA 420
             R   I + G+ +V ADLAGIE R+L+      +  +        D++     +     
Sbjct: 4   RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQVNADKI---- 59

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                   R + K +  A  Y  G    +K+  +    L++ A   K     + + +A +
Sbjct: 60  -----GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKEIRQAYIEAID 111

Query: 481 FCRWMQENHPEHAIEDLFIGTACER 505
               + E   + A E  FI     R
Sbjct: 112 GLDKLLEAIKK-ASERGFIKALDGR 135


>gi|307184738|gb|EFN71060.1| DNA polymerase subunit gamma-1, mitochondrial [Camponotus floridanus]
          Length = 1254

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 100/342 (29%), Gaps = 59/342 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +P+   S     + +     + ++    ++ I   +R  V A  G  +V AD+   E  
Sbjct: 849  IIPQVVVSGTLTRRAVEPTWMTASNA--HIERIGSELRCMVQAPPGYNIVGADVDSQELW 906

Query: 388  VL-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A                +     G D++  T                R   KV
Sbjct: 907  IASIIGDAHYKSIHGATPFGWMTLIGTKSNGTDMHSVTAKAI---------GISRDHAKV 957

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +  A  Y  G K  +++      ++       K+         A    + +     E   
Sbjct: 958  INYARIYGAGQKFAERLLKQFNPSMTDAEATSKSRKMF-----ALTKGKKVFRLKAEFIN 1012

Query: 495  EDLFIGTACERVKKAWRQKHSRVSE---LWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
             DL              + H +  +     +E     E  + N    IA  +  V     
Sbjct: 1013 NDLEDKLYTSYQAYQMAKLHGKTLQDMFQKSEWMDGSESAMFNRLEEIAGSKHPVTP--- 1069

Query: 552  KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD--- 608
                  L   L   R+L   D  ++  +L                    +VQ+ + D   
Sbjct: 1070 -----FLNARLS--RALEITDTDDDDKFL--------------PTKINWVVQSGAVDFLH 1108

Query: 609  ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            ++   M    +      L+ HDE+    P   ++NA++  H+
Sbjct: 1109 LMLVCMRWLMRDNARFCLSFHDEVRYLVPSRYKYNAALAMHV 1150


>gi|262212171|gb|ACY35702.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + + +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVETVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|17570811|ref|NP_523320.1| DNA polymerase [Enterobacteria phage T3]
 gi|118853|sp|P20311|DPOL_BPT3 RecName: Full=DNA polymerase
 gi|15702|emb|CAA35140.1| 5 [Enterobacteria phage T3]
 gi|17384295|emb|CAC86283.1| DNA polymerase [Enterobacteria phage T3]
          Length = 704

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 63/246 (25%), Gaps = 37/246 (15%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  E G      T+         VL   +   P+       I+ + 
Sbjct: 332 VVFNPSSRDHIQKKL-QEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 390

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P        
Sbjct: 391 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPY 447

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 448 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 487

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---AKAFQKMASTT 455
           +  F+ GE  +                   R   K       Y  G              
Sbjct: 488 MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKER 547

Query: 456 GLNLNT 461
           G  L  
Sbjct: 548 GKELKK 553


>gi|167521656|ref|XP_001745166.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776124|gb|EDQ89744.1| predicted protein [Monosiga brevicollis MX1]
          Length = 882

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 86/570 (15%), Positives = 159/570 (27%), Gaps = 150/570 (26%)

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVT-VTREIFKRLEPLSSKEQELWYLDQTIN 193
           K       Y R K   +  W         D   +     KR+ PL      L + DQ +N
Sbjct: 349 KYTKQGLPYKRQKLPGKPQWYKACWEGSNDKGGLEIAPGKRIAPLL---LRLQWRDQALN 405

Query: 194 DR-----------GYCVDVALAHTLNQI-VDVERTKLDQELESLTYGLVSSSRCL----- 236
           +            GY V     H  +         +   +   LT+              
Sbjct: 406 ESYPLYFHPVHKWGYLVPKGSHHAPSDKRYGPYEWEAPNDATHLTHNYFKLPNSRGPDST 465

Query: 237 -------EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
                  + LK   F++ GL                     PQA +  +N +  S    +
Sbjct: 466 CGNPFGKDYLK---FMKNGL----------------LVSDDPQAREALDNTLACSYWVSV 506

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ---------NLPRPSRSHEELD 340
           ++    + +  D R           R    +G   P Q          +P          
Sbjct: 507 RVRANKQLVVMDDR-------RERERFLTLNGRSTPKQLDSDEPIGAIIPMVLPFGTVTR 559

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK-- 398
           + +     + + +P P Q I   +++ + A  G KLV AD+   E  + A + G+Q    
Sbjct: 560 RAVEKTWMTAS-NPKP-QRIGSELKAMIQAPPGYKLVGADVDSQELWI-ASVIGDQRLGR 616

Query: 399 ---LKAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
                A            G D++  T  +   +         R   K+      Y  G  
Sbjct: 617 EHGATAMGWMTLQGTKNDGTDMHSMTA-KILGI--------NRDEAKIFNYGRIYGAG-- 665

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             +  A++                        + F   + E   +   E+L++ T  +R+
Sbjct: 666 --KAFAASL----------------------LQKFNPTITEREAQAKAEELYLETKGKRI 701

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                         ++        ++E+       +    P++  +     L       R
Sbjct: 702 -------AGARGGYFDGSESHMFTSLEDIATAATPRT---PVLGFQITDGLLPRNF-MHR 750

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620
            L      +   Y+ +                  +VQ+ + D L   + +          
Sbjct: 751 FLCV----SMSQYMTSR--------------VNWVVQSSAVDFLHLMITSMDHFIRTYGL 792

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              + +T+HDEI     D D    +   HL
Sbjct: 793 RARLCITIHDEIRYIVADEDIARVAYALHL 822


>gi|47934812|gb|AAT39844.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 199

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 47/223 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCLEKLKTWLFL---- 245
              G+ +DV  A  L Q +  +  ++ ++L+ +   +V    S +  ++LK  +      
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 246 ----------ETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293
                       G+  +  TE     V     +    P+A  ++   M   R+A  ++++
Sbjct: 61  SRKXIAERLVGVGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QIDS 118

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
            +     DGR+ G +   GA  TGR +        +P                     S 
Sbjct: 119 WL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVSA 157

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 158 PY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 195


>gi|262212381|gb|ACY35807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 354 PDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFETGEDLYVT 411
           P+  Q+ SD   R   +A+ G+ +V ADL+GIE R+L+  +A             D++  
Sbjct: 1   PNLAQVPSDLTHRRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQL 60

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
              +             R + K +  A  Y  G
Sbjct: 61  NADKI---------GITRKLVKTVTYAFLYGAG 84


>gi|37956877|gb|AAP34143.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 67/256 (26%), Gaps = 57/256 (22%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  ETG      T+         VL   +   P+       I+ + 
Sbjct: 332 VVFNPSSRDHIQKKL-QETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 390

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P        
Sbjct: 391 MIQKRIGQSSEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPY 447

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 448 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 487

Query: 399 LKAFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---A 445
           +  F+ GE        D++      A              R   K       Y  G    
Sbjct: 488 MARFDNGEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKI 537

Query: 446 KAFQKMASTTGLNLNT 461
                     G  L  
Sbjct: 538 GQIVGAGKERGKELKK 553


>gi|30387474|ref|NP_848283.1| DNA polymerase [Yersinia pestis phage phiA1122]
 gi|30314111|gb|AAP20519.1| DNA polymerase [Yersinia pestis phage phiA1122]
          Length = 704

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 66/256 (25%), Gaps = 57/256 (22%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  E G      T+         VL   +   P+       I+ + 
Sbjct: 332 VVFNPSSRDHIQKKL-QEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 390

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P        
Sbjct: 391 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPY 447

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 448 GEQCRAAFGAEHHLDE--------------ITGKPWVQAGIDASGLELRCLAHF------ 487

Query: 399 LKAFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---A 445
           +  F+ GE        D++      A              R   K       Y  G    
Sbjct: 488 MARFDNGEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKI 537

Query: 446 KAFQKMASTTGLNLNT 461
                     G  L  
Sbjct: 538 GQIVGAGKERGKELKK 553


>gi|116666722|pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
 gi|116666726|pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
          Length = 704

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 66/256 (25%), Gaps = 57/256 (22%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  E G      T+         VL   +   P+       I+ + 
Sbjct: 332 VVFNPSSRDHIQKKL-QEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 390

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P        
Sbjct: 391 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPY 447

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 448 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 487

Query: 399 LKAFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---A 445
           +  F+ GE        D++      A              R   K       Y  G    
Sbjct: 488 MARFDNGEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKI 537

Query: 446 KAFQKMASTTGLNLNT 461
                     G  L  
Sbjct: 538 GQIVGAGKERGKELKK 553


>gi|9627454|ref|NP_041982.1| DNA polymerase [Enterobacteria phage T7]
 gi|118856|sp|P00581|DPOL_BPT7 RecName: Full=DNA polymerase; AltName: Full=T7 DNA polymerase
 gi|15591|emb|CAA24412.1| unnamed protein product [Enterobacteria phage T7]
 gi|37956666|gb|AAP33936.1| gene 5 [Enterobacteria phage T7]
 gi|265524990|gb|ACY75853.1| DNA polymerase [Enterobacteria phage T7]
          Length = 704

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 66/256 (25%), Gaps = 57/256 (22%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  E G      T+         VL   +   P+       I+ + 
Sbjct: 332 VVFNPSSRDHIQKKL-QEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 390

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P        
Sbjct: 391 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPY 447

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 448 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 487

Query: 399 LKAFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---A 445
           +  F+ GE        D++      A              R   K       Y  G    
Sbjct: 488 MARFDNGEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKI 537

Query: 446 KAFQKMASTTGLNLNT 461
                     G  L  
Sbjct: 538 GQIVGAGKERGKELKK 553


>gi|229472205|gb|ACQ72617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYAGILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|194383398|dbj|BAG64670.1| unnamed protein product [Homo sapiens]
          Length = 611

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 84/273 (30%), Gaps = 33/273 (12%)

Query: 71  HNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            N+  F R VL+   N       W      A   GL      +   L   S      ++L
Sbjct: 319 FNAKDFVRIVLQFFGNDG----SWKHV---ADFIGLD---PRIAAWLIDPSDATPSFEDL 368

Query: 130 IARFC------KGETHECLYDRNKPNHREAWRLFGEY-CKGDVTVTREIFKRLEPLSSKE 182
           + ++C      K  +      RN  N      L   Y    D+    + +   +   + E
Sbjct: 369 VEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLE 428

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +      V+       + ++     +L+QE   +  G         +L+  
Sbjct: 429 LPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVA-GERFLITSNNQLREI 487

Query: 243 LFLETGLHLED-----------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           LF +  LHL                +T + VL++ + L P    +   R      +    
Sbjct: 488 LFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKST--F 545

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              + A    G +  T    G + TGR S    
Sbjct: 546 VDGLLACMKKGSISSTWNQTG-TVTGRLSAKHP 577


>gi|148807539|gb|ABR13572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     +GR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKNGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|229472347|gb|ACQ72688.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKA-FETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+  +A    +  A      D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNRRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|83753886|pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
          Length = 698

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 66/256 (25%), Gaps = 57/256 (22%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  E G      T+         VL   +   P+       I+ + 
Sbjct: 326 VVFNPSSRDHIQKKL-QEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 384

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P        
Sbjct: 385 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPY 441

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 442 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 481

Query: 399 LKAFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---A 445
           +  F+ GE        D++      A              R   K       Y  G    
Sbjct: 482 MARFDNGEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEAI 531

Query: 446 KAFQKMASTTGLNLNT 461
                     G  L  
Sbjct: 532 GQIVGAGKERGKELKK 547


>gi|2982125|pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
           Nucleoside Triphosphate, And Its Processivity Factor
           Thioredoxin
 gi|50513551|pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE AND
           DDATP
 gi|50513555|pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513559|pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template
 gi|50513563|pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513565|pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513571|pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513575|pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template And An Incoming Nucleotide
 gi|52695798|pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Ddctp At The Insertion Site
 gi|52695802|pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
           The Templating Strand
 gi|52695806|pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Damp At The Elongation Site
 gi|52695810|pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Dcmp At The Elongation Site
 gi|56553842|pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
           Insertion Site.
 gi|56554410|pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
           Acetylaminofluorene-Adducted Dna
 gi|56554414|pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Ctp As The Incoming
           Nucleotide.
 gi|56554418|pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Atp As The Incoming
           Nucleotide
          Length = 698

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 66/256 (25%), Gaps = 57/256 (22%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  E G      T+         VL   +   P+       I+ + 
Sbjct: 326 VVFNPSSRDHIQKKL-QEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 384

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P        
Sbjct: 385 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPY 441

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 442 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 481

Query: 399 LKAFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---A 445
           +  F+ GE        D++      A              R   K       Y  G    
Sbjct: 482 MARFDNGEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKI 531

Query: 446 KAFQKMASTTGLNLNT 461
                     G  L  
Sbjct: 532 GQIVGAGKERGKELKK 547


>gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/392 (13%), Positives = 105/392 (26%), Gaps = 69/392 (17%)

Query: 148 PNHREAWRLFG----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-------NDRG 196
            N    W  +     +YC  D  VT  +++ L+       +   L+  +          G
Sbjct: 51  KNDSNDWSTYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASG 110

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESL--------------------------TYGLV 230
           +  D+  A  +   +  E   + + +  +                          T    
Sbjct: 111 FRFDMDAAVRVRAQLQDEFDSITEAIAKIYLYVPGKVFTPKRADKKRGYVAGAPMTRLTD 170

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    + +   L    G     +TET   +V  +             N+          
Sbjct: 171 FNPTSRQNIAWALQTFRGARFTKITETGKPKVDEATLSEVRDIALSAGNQQL-------- 222

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                +      RL    ++LG  +    +   F    +      H     + T    + 
Sbjct: 223 ----HDECEMFIRLLTLQKWLG--QLSEGTNSWFNS--IEGDGCIHHSC-TLSTQTGRNA 273

Query: 351 TSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWM--AGEQWKLKAFETGED 407
              P+  Q++S    R   +   G  +V ADL G+E R+L     A ++          D
Sbjct: 274 HRGPNLGQVVSAPWARELFVPHPGHIMVGADLEGLELRLLGHYLAAFDEGSFAEVVVNGD 333

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++     R             R   K +  A  Y  G     K+  +    L+       
Sbjct: 334 IHQQNADRV---------GCTRTQVKTLTYAFIYGAGD---VKLGHSLQPELSDAQKKTL 381

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                 ++ DA      + +           +
Sbjct: 382 GGELRRKFLDAIPGLEPLVDAVKLKVRSTGRL 413


>gi|194100384|ref|YP_002003958.1| gp5 [Enterobacteria phage 13a]
 gi|193201431|gb|ACF15908.1| gp5 [Enterobacteria phage 13a]
          Length = 704

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 63/246 (25%), Gaps = 37/246 (15%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  E G      T+         VL   +   P+       I+ + 
Sbjct: 332 VVFNPSSRDHIQKKL-QEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 390

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P        
Sbjct: 391 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPY 447

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 448 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 487

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---AKAFQKMASTT 455
           +  F+ GE  +                   R   K       Y  G              
Sbjct: 488 MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKER 547

Query: 456 GLNLNT 461
           G  L  
Sbjct: 548 GKELKK 553


>gi|302652096|ref|XP_003017908.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
 gi|291181493|gb|EFE37263.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
          Length = 1137

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 61/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++           S+  P   +   +++ V A  G   V AD+   E
Sbjct: 671 PQVIPMGTITRRAVENT-----WLTASNAKP-NRVGSELKAMVRAPPGYVFVGADVDSEE 724

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 725 LWI-ASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNYA 774

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++            +E +      R + EN    
Sbjct: 775 KVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLR 834

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 835 GGTESFVFNKLEEFAEQERPRTP 857


>gi|47934798|gb|AAT39837.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 35/171 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL----TPQAIQVFNNRMRASR 285
             +     ++   L    G+ ++   +T    V+ + K L     P+A  ++   M   R
Sbjct: 30  EFNVGSRXQIAERLV---GVGVKFKQKTEKGAVVVNXKVLEGIDIPEAKTIYEYLMLQKR 86

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           +A  ++++ +     DGR+ G +   GA  TGR +                         
Sbjct: 87  AA--QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNL------------------- 123

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                   P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 124 -----AQVPSVXAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 169


>gi|322366583|gb|ADW95369.1| Putative DNA/RNA polymorease [Staphylococcus cohnii]
          Length = 366

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 88/245 (35%), Gaps = 31/245 (12%)

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH--------LEDLTETTCQR 261
           +    +  L  E    T  L   +   E+L+  L  E+ +         L   ++     
Sbjct: 1   METRYKIMLQPEANKATSWLTDKAS--EQLEVSLLKESLVERANRQYEQLPKESKLKLDN 58

Query: 262 VLSSNKKLTPQAIQVFNN--RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            +  + +L P   ++ +N   +   + +V+K N L +A N   R + + QF G+      
Sbjct: 59  YVDLHHQLKPLMKEIESNCITLDIEQLSVIKENMLEKAKNEQHRTKVS-QFFGSLY---- 113

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
                  Q L   +R + +L    T      +   + +Q +   ++  ++ S+ +K+   
Sbjct: 114 -------QTLDATNRLYTQLSLFGTRTHRITSKRFN-VQGLPKAIQQIIVPSQFRKVFTI 165

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D    E  V A+M  ++  ++     E LY              + K +R   K   +  
Sbjct: 166 DFKSFEPSVAAYMTQDEQLIEYLNQEEGLYDALLNEL------SLDKGKRKYVKRAFIGS 219

Query: 440 GYQGG 444
              GG
Sbjct: 220 FLFGG 224


>gi|37956824|gb|AAP34091.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 67/256 (26%), Gaps = 57/256 (22%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  ETG      T+         VL   +   P+       I+ + 
Sbjct: 332 VVFNPSSRDHIQKKL-QETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 390

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P        
Sbjct: 391 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPY 447

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 448 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 487

Query: 399 LKAFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---A 445
           +  F+ GE        D++      A              R   K       Y  G    
Sbjct: 488 MARFDNGEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKI 537

Query: 446 KAFQKMASTTGLNLNT 461
                     G  L  
Sbjct: 538 GQIVGAGKERGKELKK 553


>gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
 gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
          Length = 204

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 23/173 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + + +CV        D   ++         P VLK  L +  VT + H +
Sbjct: 22  VDTETLGLEPHRDRLCV--VQISHGDGEADVVQIPKIGPEPVVLKRVLTDPAVTKIFHYA 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIA 131
            F+  VL      +  P++       LAR+      L   V E L +   K ++  +   
Sbjct: 80  RFDLAVLYHRLGVMPGPVYCTKVASRLARTYTDRHGLKDLVRELLGVELSKQQQSSD--- 136

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                       D   P   +       Y   DV     +  +L+ + ++E+ 
Sbjct: 137 ---------WGADTLTPAQID-------YAASDVLHLHALRAKLDAMLAREER 173


>gi|262212353|gb|ACY35793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R    A+ G+ +V ADL+GIE R+LA      +  +        D++ 
Sbjct: 1   PNLAQVPSGPEFRRLFTATPGQVMVGADLSGIELRMLAHYLARYDGGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
               +             R + K +  A  Y  G
Sbjct: 61  VNADKI---------GITRKLVKNVTYAFLYGAG 85


>gi|148807564|gb|ABR13584.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     +GR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKEGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|47934624|gb|AAT39750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 49/224 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPSLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 195


>gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/398 (13%), Positives = 107/398 (26%), Gaps = 69/398 (17%)

Query: 148 PNHREAWRLFG----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-------NDRG 196
            N    W  +     +YC  D  VT  +++ L+       +   L+  +          G
Sbjct: 51  KNDSNDWSTYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASG 110

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESL--------------------------TYGLV 230
           +  D+  A  +   +  E   + + + ++                          T    
Sbjct: 111 FRFDMDAAVRVRATLQDEFDSITKSIAAIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTD 170

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    + +   L    G     +TET   +V  +             N+          
Sbjct: 171 FNPTSRQNIAWALQTFRGARFTKVTETGKPKVDEATLSEVRDIALSAGNQQL-------- 222

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                +      RL    ++LG  +    +   F    +      H     + T    + 
Sbjct: 223 ----HDECEMFIRLLTLQKWLG--QLSEGTNSWFNS--IEGDGCIHHSC-TLSTQTGRNA 273

Query: 351 TSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWM--AGEQWKLKAFETGED 407
              P+  Q++S    R   +   G  +V ADL G+E R+L     A +Q          D
Sbjct: 274 HRGPNLGQVVSAPWARELFVPHPGHVMVGADLEGLELRLLGHYLAAFDQGSFAEVVVNGD 333

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++     R             R   K +  A  Y  G     K+  +    L+       
Sbjct: 334 IHQQNADRV---------GCTRTQVKTLTYAFIYGAGD---VKLGHSLQPELSDAQKKTL 381

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                 ++ DA      + +           +     R
Sbjct: 382 GGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419


>gi|262342097|gb|ACY54559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSKFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|37956721|gb|AAP33990.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 81/320 (25%), Gaps = 58/320 (18%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  E G      T+         VL   +   P+       I+ + 
Sbjct: 332 VVFNPSSRDHIQKKL-QEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 390

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P  S     
Sbjct: 391 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--SVRSPY 447

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 448 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 487

Query: 399 LKAFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---A 445
           +  F+ GE        D++      A              R   K       Y  G    
Sbjct: 488 MARFDNGEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKI 537

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG-TACE 504
                     G  L           A       +      Q    E  ++         +
Sbjct: 538 GQIVGAGKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVAGEQQVKWKRRWIKGLD 597

Query: 505 RVKKAWRQKHSRVSELWNEL 524
             K   R  H+ ++ L    
Sbjct: 598 GRKIHVRSPHAALNTLLQSA 617


>gi|37956773|gb|AAP34041.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 81/320 (25%), Gaps = 58/320 (18%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFN 278
           +V +    + ++  L  E G      T+         VL   +   P+       I+ + 
Sbjct: 332 VVFNPSSRDHIQKKL-QEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYL 390

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +    +       +  +  DG++ G++   GA  TGR +        +P  S     
Sbjct: 391 MIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--SVRSPY 447

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +Q           D               I  +       D +G+E R LA        
Sbjct: 448 GEQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------ 487

Query: 399 LKAFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---A 445
           +  F+ GE        D++      A              R   K       Y  G    
Sbjct: 488 MARFDNGEYAHEILNGDIHTKNQIAAEL----------PTRDNAKTFIYGFLYGAGDEKI 537

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG-TACE 504
                     G  L           A       +      Q    E  ++         +
Sbjct: 538 GQIVGAGKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVAGEQQVKWKRRWIKGLD 597

Query: 505 RVKKAWRQKHSRVSELWNEL 524
             K   R  H+ ++ L    
Sbjct: 598 GRKIHVRSPHAALNTLLQSA 617


>gi|148807599|gb|ABR13599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMSQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  +GR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-SGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|229472545|gb|ACQ72787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDVHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472203|gb|ACQ72616.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +     ++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLPSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|213025636|ref|ZP_03340083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 99

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 12/99 (12%)

Query: 160 YCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLN 208
           Y   D  VT ++  ++ P   +           E  L  +   +   G  +D A+ H  +
Sbjct: 1   YAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHS 60

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           + + +   +L+++   +  G   +    ++L+T LF + 
Sbjct: 61  EEITLRLAELEKKAHDIA-GEAFNLSSTKQLQTILFEKQ 98


>gi|256272554|gb|EEU07533.1| Mip1p [Saccharomyces cerevisiae JAY291]
          Length = 1254

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 98/342 (28%), Gaps = 91/342 (26%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + + +   + ++       I   +++ V A  G   V AD+   E  
Sbjct: 643 IIPKIVPMGTITRRAVENTWLTASNA--KANRIGSELKTQVKAPPGYCFVGADVDSEELW 700

Query: 388 VLAWMAGEQ-----------WKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W         G DL+  T          Q+    R   K+
Sbjct: 701 I-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA---------QILGCSRNEAKI 750

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  GA                 + L+K  +     E+ +     + EN      
Sbjct: 751 FNYGRIYGAGA--------------KFASQLLKRFNPSLTDEETKKIANKLYEN------ 790

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +  KK W      +  L+N+L    EQ                        
Sbjct: 791 -TKGKTKRSKLFKKFWYGGSESI--LFNKLESIAEQ------------------------ 823

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL---- 610
                   P    L     G   +Y  +  ++  R  ++        +Q+   D L    
Sbjct: 824 ------ETPKTPVL-----GCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLC 870

Query: 611 --AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              E ++        + +++HDEI     + D++ A+M   +
Sbjct: 871 CSMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQI 912


>gi|190407627|gb|EDV10894.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae RM11-1a]
          Length = 1254

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 98/342 (28%), Gaps = 91/342 (26%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + + +   + ++       I   +++ V A  G   V AD+   E  
Sbjct: 643 IIPKIVPMGTITRRAVENTWLTASNA--KANRIGSELKTQVKAPPGYCFVGADVDSEELW 700

Query: 388 VLAWMAGEQ-----------WKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W         G DL+  T          Q+    R   K+
Sbjct: 701 I-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA---------QILGCSRNEAKI 750

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  GA                 + L+K  +     E+ +     + EN      
Sbjct: 751 FNYGRIYGAGA--------------KFASQLLKRFNPSLTDEETKKIANKLYEN------ 790

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +  KK W      +  L+N+L    EQ                        
Sbjct: 791 -TKGKTKRSKLFKKFWYGGSESI--LFNKLESIAEQ------------------------ 823

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL---- 610
                   P    L     G   +Y  +  ++  R  ++        +Q+   D L    
Sbjct: 824 ------ETPKTPVL-----GCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLC 870

Query: 611 --AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              E ++        + +++HDEI     + D++ A+M   +
Sbjct: 871 CSMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQI 912


>gi|151945409|gb|EDN63652.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae YJM789]
 gi|207340866|gb|EDZ69085.1| YOR330Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1280

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 98/342 (28%), Gaps = 91/342 (26%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + + +   + ++       I   +++ V A  G   V AD+   E  
Sbjct: 669 IIPKIVPMGTITRRAVENTWLTASNA--KANRIGSELKTQVKAPPGYCFVGADVDSEELW 726

Query: 388 VLAWMAGEQ-----------WKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W         G DL+  T          Q+    R   K+
Sbjct: 727 I-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA---------QILGCSRNEAKI 776

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  GA                 + L+K  +     E+ +     + EN      
Sbjct: 777 FNYGRIYGAGA--------------KFASQLLKRFNPSLTDEETKKIANKLYEN------ 816

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +  KK W      +  L+N+L    EQ                        
Sbjct: 817 -TKGKTKRSKLFKKFWYGGSESI--LFNKLESIAEQ------------------------ 849

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL---- 610
                   P    L     G   +Y  +  ++  R  ++        +Q+   D L    
Sbjct: 850 ------ETPKTPVL-----GCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLC 896

Query: 611 --AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              E ++        + +++HDEI     + D++ A+M   +
Sbjct: 897 CSMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQI 938


>gi|470326|gb|AAA17543.1| mitochondrial DNA polymerase [Saccharomyces cerevisiae]
          Length = 1254

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 98/342 (28%), Gaps = 91/342 (26%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + + +   + ++       I   +++ V A  G   V AD+   E  
Sbjct: 643 IIPKIVPMGTITRRAVENTWLTASNA--KANRIGSELKTQVKAPPGYCFVGADVDSEELW 700

Query: 388 VLAWMAGEQ-----------WKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W         G DL+  T          Q+    R   K+
Sbjct: 701 I-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA---------QILGCSRNEAKI 750

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  GA                 + L+K  +     E+ +     + EN      
Sbjct: 751 FNYGRIYGAGA--------------KFASQLLKRFNPSLTDEETKKIANKLYEN------ 790

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +  KK W      +  L+N+L    EQ                        
Sbjct: 791 -TKGKTKRSKLFKKFWYGGSESI--LFNKLESIAEQ------------------------ 823

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL---- 610
                   P    L     G   +Y  +  ++  R  ++        +Q+   D L    
Sbjct: 824 ------ETPKTPVL-----GCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLC 870

Query: 611 --AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              E ++        + +++HDEI     + D++ A+M   +
Sbjct: 871 CSMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQI 912


>gi|229472555|gb|ACQ72792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S G+ +V ADLAGIE R+L       +  +        D++ 
Sbjct: 1   PNLAQVPSDPRFRELFLPSPGQVMVGADLAGIEFRMLTHFLARYDDGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               + DA +    + E   + A E  FI     R
Sbjct: 109 IRGAYIDAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|148807534|gb|ABR13570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-TYEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAP-----FGRECRSFWWVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|109082314|ref|XP_001092360.1| PREDICTED: DNA polymerase subunit gamma-1 [Macaca mulatta]
          Length = 1228

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 97/344 (28%), Gaps = 49/344 (14%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 829  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 886

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   KV
Sbjct: 887  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKV 937

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++        RW + +  E   
Sbjct: 938  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAITKGLRWYRLSD-EGEW 992

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK--RRDVPLVYMK 552
                +    +R +  W        +L     +A  ++      +IA +  +         
Sbjct: 993  LVRELHLPVDRTEGGWISLQ----DLRKVQREAARKSHRKKWEVIAERAWKGGTESEMFN 1048

Query: 553  KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
            K ++     +P    L  R                +R           +VQ+ + D L  
Sbjct: 1049 KLESIATSDIPRTPVLGCRISRALEPSAVQGEFMTSR--------VNWVVQSSAVDYLHL 1100

Query: 613  GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             ++                +++HDE+     + D + A++   +
Sbjct: 1101 MLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1144


>gi|148675119|gb|EDL07066.1| polymerase (DNA directed), gamma, isoform CRA_b [Mus musculus]
          Length = 1239

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 103/349 (29%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 840  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 897

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 898  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 948

Query: 435  MELALGYQGGAKAFQKMASTTG--LNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G    +++       L     A         T         A+      Q 
Sbjct: 949  FNYGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQL 1008

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            N P    ED ++     +  +  R++ SR S  W +   A E+    G       +  + 
Sbjct: 1009 NLPVDRTEDGWVSL---QDLRMIRREASRKSR-WKKWEVASERAWTGGTESEMFNK--LE 1062

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
             + M       +L     R+L    V         T+R               +VQ+ + 
Sbjct: 1063 SIAMSDTPRTPVLGCCISRALEPSVVQGEF----ITSR------------VNWVVQSSAV 1106

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D + A++   +
Sbjct: 1107 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1155


>gi|262212121|gb|ACY35677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212127|gb|ACY35680.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +  ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMAGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++     K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKDAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEATDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|239908264|ref|YP_002955005.1| hypothetical protein DMR_36280 [Desulfovibrio magneticus RS-1]
 gi|239798130|dbj|BAH77119.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 1507

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 78/247 (31%), Gaps = 30/247 (12%)

Query: 339  LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            ++QI T       S    L  ++   R   + SEG  ++  D+   E  +++ ++ + + 
Sbjct: 1245 INQIETTTGR---SGYRILSTLNKKFRLLFLPSEGHVILAFDMKHFEPTIISSLSNDTYA 1301

Query: 399  LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            L    +G+D+Y          A  +   + R+ GKV+       G   A       T + 
Sbjct: 1302 LGLINSGKDIYTEVAMSISG-ALNEERFNDRSFGKVLFNIAINGGNEHALVSRCYETNVI 1360

Query: 459  LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA---------------------IEDL 497
            +         N+    +     F   +      +                      +  +
Sbjct: 1361 ITRSCSAEIFNNFRNMFPVIFQFQNRILHMARTYGKMYTKFSRVLYVDDNVKDSTIVNFV 1420

Query: 498  FIGTACERVKKAWRQK-----HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              G+  +  K+   +      H     L++     + Q  E+G A      R++    + 
Sbjct: 1421 VQGSGADAFKRLLLKVNDFLNHPEEDILFHHFDALYIQVPEHGAAKRMEALREIIEDSLS 1480

Query: 553  KDKNNLI 559
             D  N+ 
Sbjct: 1481 SDFGNVR 1487


>gi|148747811|ref|YP_001285777.1| DNA polymerase [Phormidium phage Pf-WMP3]
 gi|146230044|gb|ABQ12452.1| DNA polymerase [Phormidium phage Pf-WMP3]
          Length = 363

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 115/369 (31%), Gaps = 67/369 (18%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGF--DDHPVELWDCVHD--PVMPQVLKEAL 61
           +D E     DL+     +Y  D  V L    F  D       D V+     M  +     
Sbjct: 12  LDIE---SDDLSA----QYDVDTRVYLIGVQFLADYGLYAAGDYVYGSLEEMRDLCVSLA 64

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +TDVT V HN+ F+   L+      IPI R+ CT V A +    S+ +   ++L     
Sbjct: 65  NDTDVTFVIHNASFDVPALRL---RGIPIKRYFCTQVAAHTWHPKSSEENSLDSLTGMKL 121

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRL----FGEYCKGDVTVTREIFKRLEP 177
            +    E+     KG+     Y          W      F  Y   D+  T +++  LE 
Sbjct: 122 DLRAELEVYRPDLKGKPKGYEYRLYDDKSHRGWSTVNDIFHSYLVSDLQATGKLYTTLED 181

Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTL------------------- 207
                      L    Q    L      +G  VDV     +                   
Sbjct: 182 NFSSDERALRCLLDINQPYVELIIEFE-QGSWVDVDRVDEVQSKLQTLRDEAWSEITTHI 240

Query: 208 ---NQIVDVERTKLDQELESLTYGL----VSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
                 +   +    +    +TY        +    +++   L    G     L++ T +
Sbjct: 241 RYDVTEIKRYKNGYKKRNGVVTYDHCPLVDFNPGSSDQVAAALTYLYGWEPTKLSDKTGK 300

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-----DGRLRGTLQFLGASR 315
              SS      + ++  N  + +S     K+  L++ +       DG +        A+R
Sbjct: 301 PSTSS------EVLEELNYPLVSSLVKYQKMAKLMQFIPQIQANLDGNILRPSYNQSATR 354

Query: 316 TGRWSGCVF 324
           T R S    
Sbjct: 355 TTRLSSSKP 363


>gi|229472507|gb|ACQ72768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 16/154 (10%)

Query: 355 DPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVT 411
           +  Q+ SD   R+  + S G+ +V ADL+GIE R+L+      +  +        D +  
Sbjct: 1   NLAQVPSDPRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDTHQV 60

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +             R + K +  A  Y  G    +K+  +    L++     K    
Sbjct: 61  NADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSAKAKKKGKEI 108

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            E + DA +    +       A E  FI     R
Sbjct: 109 REAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGR 141


>gi|17570813|ref|NP_523322.1| gene 5B protein [Enterobacteria phage T3]
 gi|579192|emb|CAA35141.1| 5B [Enterobacteria phage T3]
 gi|17384297|emb|CAC86285.1| gene 5B protein [Enterobacteria phage T3]
          Length = 372

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 62/245 (25%), Gaps = 37/245 (15%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFNN 279
           + +    + ++  L  E G      T+         VL   +   P+       I+ +  
Sbjct: 1   MFNPSSRDHIQKKL-QEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLM 59

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +    +       +  +  DG++ G++   GA  TGR +        +P         
Sbjct: 60  IQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAV-TGRATHAFPNLAQIP--GVRSPYG 116

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           +Q           D               I  +       D +G+E R LA        +
Sbjct: 117 EQCRAAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------M 156

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---AKAFQKMASTTG 456
             F+ GE  +                   R   K       Y  G              G
Sbjct: 157 ARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERG 216

Query: 457 LNLNT 461
             L  
Sbjct: 217 KELKK 221


>gi|262212213|gb|ACY35723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 355 DPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVT 411
           +  Q+ SD   R   I + G+ +V ADLAGIE R+L+      +  +        D++  
Sbjct: 1   NLAQVPSDHRFRELFILTPGQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQV 60

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +             R + K +  A  Y  G    +K+  +    L++ A   K    
Sbjct: 61  NADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSQAAKKKGKEI 108

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            + + +A +    + E   + A E  FI     R
Sbjct: 109 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 141


>gi|312078568|ref|XP_003141795.1| hypothetical protein LOAG_06211 [Loa loa]
 gi|307763041|gb|EFO22275.1| hypothetical protein LOAG_06211 [Loa loa]
          Length = 1064

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 106/338 (31%), Gaps = 60/338 (17%)

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE------------QWKLKAFET- 404
           Q+I   ++S V   +   +V AD+   E  + A +                  L A    
Sbjct: 655 QMIGTNLKSMVECPQDWHIVGADVDSQEQWIAAMLGDCCVGRGIAGATPFSNMLLAGRKA 714

Query: 405 -GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              DL+                   R   KV+  A  Y  G     +    +G+N     
Sbjct: 715 DNSDLHSVVAKEV---------GISRDKAKVLNYARLYGSGVAHAAEFLMQSGMNSERAL 765

Query: 464 HLV---------KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            +          K  +  +  E+  ++ RW  +N     ++  ++          +R + 
Sbjct: 766 SVSNKLFATTKGKRFNFLKLNENYNDYFRWYIDNLCTSKMKTYYLYANGSYFLPEYRIRQ 825

Query: 515 SRVS---------ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-------L 558
            +++          +WN+L +  +  ++  K  + ++  D    Y              L
Sbjct: 826 GKLTLNFEDWLYEGVWNKLREKGQDEVDFSKDWLIKQIYDECTEYQLYTGGFESDTFNYL 885

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK-----LTENIVQAVSRD---IL 610
            L L +        +     Y  T   +  R++ Y  K     +   +VQ+ + D   +L
Sbjct: 886 ELTL-NNPKPCTPVLNCQLGYCLTPLPKDVRDHEYFLKKYRRSIINWVVQSSAVDFLHLL 944

Query: 611 AEGMM---NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
              M       +      L++HDEI    P  D +  +
Sbjct: 945 IVCMKWLCEIYQIEARFALSIHDEIRYIVPAEDRYRCA 982


>gi|296809768|ref|XP_002845222.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
 gi|238842610|gb|EEQ32272.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
          Length = 1133

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 61/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++           S+  P   +   +++ V A  G   V AD+   E
Sbjct: 666 PQVIPMGTITRRAVENT-----WLTASNAKP-NRVGSELKAMVRAPPGYVFVGADVDSEE 719

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 720 LWI-ASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNA 769

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++            +E +      R + EN    
Sbjct: 770 KVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRMLSENPFLR 829

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 830 GGTESFVFNKLEEFAEQERPRTP 852


>gi|87080815|ref|NP_059490.2| DNA polymerase subunit gamma-1 [Mus musculus]
 gi|37537265|dbj|BAC98463.1| polymerase (DNA directed), gamma [Mus musculus]
          Length = 1217

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 103/349 (29%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 818  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 875

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 876  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 926

Query: 435  MELALGYQGGAKAFQKMASTTG--LNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G    +++       L     A         T         A+      Q 
Sbjct: 927  FNYGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQL 986

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            N P    ED ++     +  +  R++ SR S  W +   A E+    G       +  + 
Sbjct: 987  NLPVDRTEDGWVSL---QDLRMIRREASRKSR-WKKWEVASERAWTGGTESEMFNK--LE 1040

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
             + M       +L     R+L    V         T+R               +VQ+ + 
Sbjct: 1041 SIAMSDTPRTPVLGCCISRALEPSVVQGEF----ITSR------------VNWVVQSSAV 1084

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D + A++   +
Sbjct: 1085 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1133


>gi|1297340|gb|AAA98977.1| DNA polymerase gamma [Mus musculus]
          Length = 1238

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 105/349 (30%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 818  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPTGYVLVGADVDSQELW 875

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A +AG        W         G DL+  T A           +  R   K+
Sbjct: 876  IAAVLGDAHLAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------RIHREHAKI 926

Query: 435  MELALGYQGGAKAFQKMASTTG--LNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G    +++       L     A         T         A+      Q 
Sbjct: 927  FNYGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQL 986

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            N P    ED ++     +  +  R++ SR S  W +   A E+    G       +  + 
Sbjct: 987  NLPVDRTEDGWVSL---QDLRMIRREASRKSR-WKKWEVASERAWTGGTESEMFNK--LE 1040

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
             + M       +L     R+L    V         T+R               +VQ+ + 
Sbjct: 1041 SIAMSDTPRTPVLGCCISRALEPSVVQGEF----ITSR------------VNWVVQSSAV 1084

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D + A++   +
Sbjct: 1085 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1133


>gi|148807511|gb|ABR13559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 31/164 (18%)

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 51  SRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA--QID 107

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 108 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 146

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 147 APY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|331697147|ref|YP_004333386.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
 gi|326951836|gb|AEA25533.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
          Length = 502

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 83/286 (29%), Gaps = 50/286 (17%)

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
            R     +  +  +G   +     ++    F   G+ L        ++V        P  
Sbjct: 162 RRLAALADDIATAFGRPVNPDSPAEVLR-AFGRVGVELPSTRSWVLKQV------DHPAV 214

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   +  A                   RL       G +    W              
Sbjct: 215 APLLAYKELA-------------------RLHSA---HGWAWLRTWVHD----------G 242

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           R   E            T     LQ I   VR+ V A  G +LVVAD A +E R+LA MA
Sbjct: 243 RFRPEYVVGGVVSGRWATRGGGALQ-IPKAVRAAVRADPGNRLVVADAAQLEPRILAAMA 301

Query: 394 GEQWKLKA--FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           G+    +A   +   DLY       F  A      D RA  K+  L+  Y   +      
Sbjct: 302 GDAALARAGGRDQDSDLYAGLAHELFGGA----GPDGRAKAKLAVLSAIYGQTSGD---A 354

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR-WMQENHPEHAIED 496
            +   L    F   V+   A     +     R W+    P  A  D
Sbjct: 355 GAHLALLRRRFPAAVEVVEAAARAGEEGRIVRSWLGRTCPPAAPGD 400


>gi|284991224|ref|YP_003409778.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
 gi|284064469|gb|ADB75407.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
          Length = 552

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 10/196 (5%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R                ++    L + +  VR   +A +G +LVVAD+A +E RVLA
Sbjct: 272 RDGRFRSWFVPGGVVTGRWASNGGGALSVPTQ-VRPAAVADDGWRLVVADVAQLEPRVLA 330

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            M+G+    +A            A  +    A  T + RA  KV  L   Y        +
Sbjct: 331 GMSGDDAMAEAARA---------ADLYEGMVAAGTVETRAQAKVAILGAMYGATRGESGR 381

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           +             LV+  +   E  D  +         P  A  +  +           
Sbjct: 382 IMPRLARRYPRAIGLVEQAARAGERGDVVHTLLGRGSPRPTGAWAERAVALGEPAEVSGS 441

Query: 511 RQKHSRVSELWNELHQ 526
            ++  R    W    +
Sbjct: 442 PEERDRARRAWGRFTR 457


>gi|74226616|dbj|BAE21732.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 100/349 (28%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 818  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 875

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 876  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 926

Query: 435  MELALGYQGGAKAFQKMASTTG--LNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G    +++       L     A         T         A+      Q 
Sbjct: 927  FNYGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQL 986

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            N P    ED     + + ++   R+   +    W +   A E+    G       +  + 
Sbjct: 987  NLPVDRTEDG--WVSLQDLRMIQREASRK--SRWKKWEVASERAWTGGTESEMFNK--LE 1040

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
             + M       +L     R+L    V         T+R               +VQ+ + 
Sbjct: 1041 SIAMSDTPRTPVLGCCISRALEPSVVQGEF----ITSR------------VNWVVQSSAV 1084

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D + A++   +
Sbjct: 1085 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1133


>gi|262342235|gb|ACY54628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAG+E R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELFLPSPNQVMVGADLAGVELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|312436366|gb|ADQ83175.1| DNA polymerase [Yersinia phage Yep-phi]
          Length = 704

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 69/254 (27%), Gaps = 47/254 (18%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQA------IQVFNN 279
           +V +    + +   L     + +             VL   K   P A      I+ +  
Sbjct: 332 VVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLM 391

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEE 338
             +         N  +  +  DGR+ G++   GA  TGR +        +P   +   E 
Sbjct: 392 IQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGAV-TGRATHSFPNVAQVPSIRAAYGEP 450

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA---GE 395
                          PDP                    V  D +G+E R L        E
Sbjct: 451 CRAAFGAEHNLKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRYDE 493

Query: 396 QWKLKAFETGEDLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
              ++   TG D++      A    +         R   K       Y  GA    K+  
Sbjct: 494 GEYVETILTG-DIHTKNQMAA---GLPT-------RDNAKTFIYGFLYGAGA---AKIGQ 539

Query: 454 TTGLNLNTFAHLVK 467
             G        L+K
Sbjct: 540 IVGGTAEDGKRLIK 553


>gi|332238690|ref|XP_003268536.1| PREDICTED: DNA polymerase subunit gamma-1 [Nomascus leucogenys]
          Length = 1231

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 94/347 (27%), Gaps = 55/347 (15%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 832  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 889

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   KV
Sbjct: 890  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKV 940

Query: 435  MELALGYQGGAKAFQKMA-----STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                  Y  G    +++        T       A  +   +    W    +   W+    
Sbjct: 941  FNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVREL 1000

Query: 490  PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                        + + ++K  R+   +    W +   A E+  + G              
Sbjct: 1001 HLPVDRTEGGWISLQDLRKVQREAARK--SQWKKWEVAAERAWKGGTESEM--------- 1049

Query: 550  YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
               K ++     +P    L                   +R           +VQ+ + D 
Sbjct: 1050 -FNKLESIATSDIPRTPVLGCCISRALEPSAVQGEFMTSR--------VNWVVQSSAVDY 1100

Query: 610  LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            L   ++                +++HDE+     + D + A++   +
Sbjct: 1101 LHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1147


>gi|125999975|ref|YP_001039646.1| DNA polymerase A domain-like protein [Erwinia amylovora phage
           Era103]
 gi|121621831|gb|ABM63405.1| DNA polymerase A domain-like protein [Enterobacteria phage Era103]
          Length = 833

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IAS+GKK++  D AG+E RVLA    +    +    G D++             +
Sbjct: 550 LRDLFIASKGKKVLGCDGAGLELRVLAHFMNDPEYSEVVLHG-DIHTH--------NQEK 600

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
                R + K    A  Y  G       A+  G+++     +
Sbjct: 601 AGLPLRDMAKTFIYAFLYGSGDDNL---AAVCGVSVKEMKAI 639


>gi|238060029|ref|ZP_04604738.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237881840|gb|EEP70668.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 554

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 53/175 (30%), Gaps = 26/175 (14%)

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R  R H E            T     LQ I   +R  V+A  G +LVVAD   +E RVLA
Sbjct: 283 RGGRFHPEYVPGGVVSGRWATRGGGALQ-IPKVIRRAVVADPGWRLVVADAGQLEPRVLA 341

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G+     A   G+         SF           R   KV  L   Y         
Sbjct: 342 AVSGDARLAAAGGAGDLY-AALARDSFGGD--------RPRAKVALLGAMYG-------- 384

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
              T G+ +     L         +  A  +            +   ++G  C  
Sbjct: 385 --QTGGMAVPALTVL------RRNYPTAFAYVEAAARTGEAGGLVRSWLGRTCPP 431


>gi|302497375|ref|XP_003010688.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
 gi|291174231|gb|EFE30048.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
          Length = 1138

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 61/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++           S+  P   +   +++ V A  G   V AD+   E
Sbjct: 672 PQVIPMGTITRRAVENT-----WLTASNAKP-NRVGSELKAMVRAPPGYVFVGADVDSEE 725

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 726 LWI-ASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNA 775

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++            +E +      R + EN    
Sbjct: 776 KVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLR 835

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 836 GGTESFVFNKLEEFAEQERPRTP 858


>gi|194100439|ref|YP_002003812.1| gp5 [Klebsiella phage K11]
 gi|193201378|gb|ACF15856.1| gp5 [Klebsiella phage K11]
          Length = 709

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 60/264 (22%), Gaps = 73/264 (27%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQ------AIQVFNN 279
           +V +    + +   L     +  E            VL   +   P+       I+ +  
Sbjct: 337 VVFNPSSRDHIALKLKEAGWVPTEFTEKGAPKVDDEVLEHVRVGDPEKQRCIDLIKEYLM 396

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +    A       +  +  DG++ G++   GA                          
Sbjct: 397 IQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA-------------------------- 430

Query: 340 DQIITHLPTSITSDPDPLQIISDCV------RSCVIA--------SEGKKLVVADLAGIE 385
                    +  S P+  Q+           R+   A         +       D +G+E
Sbjct: 431 -----VTGRATHSFPNLGQVPGVRSPYGEPCRAAFGAEHHLDGLTGQPWVQAGIDASGLE 485

Query: 386 ARVLAWMA---GEQWKLKAFETGEDLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            R LA       +         G D++    T A              R   K       
Sbjct: 486 LRCLAHFMSKYDDGAYADVILNG-DIHTVNQTAAEL----------PTRDNAKTFIYGFL 534

Query: 441 YQGG---AKAFQKMASTTGLNLNT 461
           Y  G              G  L  
Sbjct: 535 YGAGDEKIGQIVGAGKERGKELKK 558


>gi|326472602|gb|EGD96611.1| DNA polymerase gamma [Trichophyton tonsurans CBS 112818]
          Length = 1140

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 61/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++           S+  P   +   +++ V A  G   V AD+   E
Sbjct: 674 PQVIPMGTITRRAVENT-----WLTASNAKP-NRVGSELKAMVRAPPGYVFVGADVDSEE 727

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 728 LWI-ASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNA 777

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++            +E +      R + EN    
Sbjct: 778 KVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLR 837

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 838 GGTESFVFNKLEEFAEQERPRTP 860


>gi|77407374|ref|ZP_00784270.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77174018|gb|EAO76991.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 91

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 596 KLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLY- 648
               + +Q  + DIL   M+N  +     GY   ++L VHDEIV E P+ +      L  
Sbjct: 5   TAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVT 64

Query: 649 HLMTSNPSWAKGLPLKAE 666
             M S  S    +PL A+
Sbjct: 65  KTMESAIS--LSVPLIAD 80


>gi|148807528|gb|ABR13567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A   +   M   R+A
Sbjct: 46  EFNVGSRKRIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKTTYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 185


>gi|148807603|gb|ABR13601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAEMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+ A    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMPAHYMRDE 185


>gi|148807541|gb|ABR13573.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807546|gb|ABR13575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 45  EYNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 103

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +                           
Sbjct: 104 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNL-------------------AQ 140

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +  S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 141 VASVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDE 184


>gi|259149807|emb|CAY86611.1| Mip1p [Saccharomyces cerevisiae EC1118]
          Length = 1280

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 97/342 (28%), Gaps = 91/342 (26%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + + +   + ++       I   +++ V A  G   V AD+   E  
Sbjct: 669 IIPKIVPMGTITRRAVENTWLTASNA--KANRIGSELKTQVKAPPGYCFVGADVDSEELW 726

Query: 388 VLAWMAGEQ-----------WKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W         G DL+  T          Q+    R   K+
Sbjct: 727 I-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA---------QILGCSRNEAKI 776

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G                  + L+K  +     E+ +     + EN      
Sbjct: 777 FNYGRIYGAGT--------------KFASQLLKRFNPSLTDEETKKIANKLYEN------ 816

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +  KK W      +  L+N+L    EQ                        
Sbjct: 817 -TKGKTKRSKLFKKFWYGGSESI--LFNKLESIAEQ------------------------ 849

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL---- 610
                   P    L     G   +Y  +  ++  R  ++        +Q+   D L    
Sbjct: 850 ------ETPKTPVL-----GCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLC 896

Query: 611 --AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              E ++        + +++HDEI     + D++ A+M   +
Sbjct: 897 CSMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQI 938


>gi|47934634|gb|AAT39755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 49/237 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------------------VSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +   +                    +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLN 292
             +++   L    G+  +  TE     V     +    P+A  ++   M   R+A  +++
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLEGIDIPEAKTIYEYLMLQKRAA--QID 117

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P                     S
Sbjct: 118 SWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP-------------------SVS 156

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            P          RS     EG KL+    +G+E R+LA    ++            +
Sbjct: 157 APY-----GKECRSFWCVPEGHKLIGCGASGLELRMLAHYMRDERYTNEILMRRHPH 208


>gi|262212347|gb|ACY35790.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 354 PDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFETGEDLYVT 411
           P+  Q+ SD   R   +A+ G+  V ADL+GIE R+L+  +A             D++  
Sbjct: 1   PNLAQVPSDLTYRRLFMATPGQVTVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQL 60

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
              +             R + K +  A  Y  G
Sbjct: 61  NADKI---------GTARKLVKTVTYAFLYGAG 84


>gi|315042021|ref|XP_003170387.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
 gi|311345421|gb|EFR04624.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
          Length = 1138

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 61/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++           S+  P   +   +++ V A  G   V AD+   E
Sbjct: 672 PQVIPMGTITRRAVENT-----WLTASNAKP-NRVGSELKAMVRAPPGYVFVGADVDSEE 725

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 726 LWI-ASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNA 775

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++            +E +      R + E+    
Sbjct: 776 KVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRLLSEDPFLR 835

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 836 GGTESFVFNKLEEFAEQERPRTP 858


>gi|262342127|gb|ACY54574.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 354 PDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFETGEDLYVT 411
           P+  Q+ SD   R   +A+ G  +V AD++GIE R+L+  +A     L       D++  
Sbjct: 1   PNLAQVPSDLTYRRLFMATPGLVMVGADVSGIELRMLSHYLARYNTYLGDNLLNGDIHQL 60

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
              +             R + K +  A  Y  G
Sbjct: 61  NADKI---------GITRKLVKTVTYAFLYGAG 84


>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
 gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
          Length = 374

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 25/190 (13%)

Query: 4   LFIDFETRSP--IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L  D ET +   +DL    +  Y E VC++ F +   D  V L       + P  LK  L
Sbjct: 16  LAKDLETCAVFAVDLEADSMHSYQEKVCLLQFTY--HDTTVLLDPLAAGDLAP--LKPVL 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            ++ +  + H + ++   L   F  DI I     T++ ++  G     + VG A  L   
Sbjct: 72  ADSSIRKIFHAADYDIRCLARDF--DIEIRGLFDTMIASQFLGE----EKVGLADVLGKY 125

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L  RF + +         +P   E       Y   D     ++   LEP   +
Sbjct: 126 FDVT---LDKRFQRAD------WSKRPLSPEM----CHYAAEDTRHLEKLVAILEPALKE 172

Query: 182 EQELWYLDQT 191
           +  LW++++ 
Sbjct: 173 KDRLWWVEEE 182


>gi|297463314|ref|XP_002702642.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|297487953|ref|XP_002696610.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|296475559|gb|DAA17674.1| polymerase (DNA directed), gamma [Bos taurus]
          Length = 1223

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 100/344 (29%), Gaps = 49/344 (14%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 824  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 881

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 882  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 932

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +     Y  G    Q  A    +  N      +     ++        R  + +  E   
Sbjct: 933  INYGRIYGAG----QPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSD-EGEW 987

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK--RRDVPLVYMK 552
                +    ER +  W      + +L     +A +++      ++A++            
Sbjct: 988  LVKELDLPVERTEDGWVS----LKDLRKIQREASKKSRWKKWEVVAQRAWMGGTESEMFN 1043

Query: 553  KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
            K ++     +P    L  R                +R           +VQ+ + D L  
Sbjct: 1044 KLESIATSDIPRTPVLGCRISRALEPCAVRGEFMTSR--------VNWVVQSSAVDYLHL 1095

Query: 613  GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             ++                +++HDE+     + D + A++   +
Sbjct: 1096 MLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1139


>gi|74195213|dbj|BAE28339.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 104/349 (29%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 818  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 875

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 876  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 926

Query: 435  MELALGYQGGAKAFQKMASTTG--LNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G    +++       L     A         T         A+      Q 
Sbjct: 927  FNYGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQL 986

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            N P    ED ++     +  +  R++ SR S  W +   A E+    G       +  + 
Sbjct: 987  NLPVDRTEDGWVSL---QDLRMIRREASRKSR-WKKWEVASERAWTGGTESEMFNK--LE 1040

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
             + M       +L     R+L    V         T+R               +VQ+ + 
Sbjct: 1041 SIAMSDTPRTPVLGCCISRALEPSVVQGEF----ITSR------------VNWVVQSSAV 1084

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D ++A++   +
Sbjct: 1085 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYHAALALQI 1133


>gi|33322851|gb|AAQ07161.1|AF496471_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 95

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY- 648
               + +Q  + DI+   M+N  K          +V+ VHDE++ + P  +      +  
Sbjct: 9   TAINSPIQGSAADIMKIAMINVQKKLDELGLKTKMVVQVHDELIFDVPADELETIXKIVP 68

Query: 649 HLMTSNPSWAKGLPLKAE-GYESKRY 673
            +M +       +PL A+ G+    Y
Sbjct: 69  SVMQAAVK--LDVPLVADAGWGHDWY 92


>gi|300867748|ref|ZP_07112393.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300334331|emb|CBN57565.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 433

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 101/330 (30%), Gaps = 63/330 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHDPVMPQV 56
             L+ID E           +  Y  +  + L     D + +      L D +  P +   
Sbjct: 21  KILWIDTE-----------VADYKFNPTLSLIQVLADANDLTGNASFLLDVLEQPELTVD 69

Query: 57  LKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +  + N D+  V HN+ ++          D       CTL LAR              
Sbjct: 70  FIDKIMANPDIEKVMHNASYDI----RFLGND-RAQNITCTLKLARKIPY--------YV 116

Query: 116 LKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           L L + K+   K LI   C     +  E   D  K    E      EY K DV    E+ 
Sbjct: 117 LPLPNHKL---KTLIEALCGIPNVDKAEQGGDWGKRPLTEKQ---LEYAKMDVVYLAEVH 170

Query: 173 KRLEPL-----SSKEQELWYLD----QTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             L  +          E   L     Q I  +   +D  +A         ER K   + +
Sbjct: 171 SHLIEIVDEYCPDSATENLTLLGEQYQEIEAQWKPLDSEIAEI------KERMKAGMQAQ 224

Query: 224 SLTYGLVSSSRCLEKLKTW------LFLETGLHLE---DLTETTCQRVLSSNKKLTPQAI 274
           ++T            +K        L    G+ L     LT+   +++       + Q  
Sbjct: 225 NVTNNSYFKLSSSTTMKVDFMTLANLAESQGIELNFPVTLTKEVQKQLGKLISHPSLQIE 284

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
           ++ + R+ ++     K    +     D  L
Sbjct: 285 EISSFRLTSAVQQRRKSPQKITLAPEDEDL 314


>gi|238695631|ref|YP_002922658.1| P44 [Xanthomonas phage phiL7]
 gi|190343998|gb|ACE75784.1| P44 [Xanthomonas phage phiL7]
          Length = 330

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 102/327 (31%), Gaps = 82/327 (25%)

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP----------- 421
           G K+V +D   +E  V A +      +     G D++V    +++  A            
Sbjct: 6   GGKIVQSDFKSLEIYVQAALTQCIQLVADLIAGLDMHVLRAEQAWGRAEGRDYAYILKAA 65

Query: 422 -AQVTKDQ------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             +   +       R+  KV      Y  G     K+A+TTG+++     L++  +  E 
Sbjct: 66  QDENHPEHAKWSELRSNAKVFSFQRAYGAGV---AKIAATTGMSVEDVEALIEAEA--ER 120

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           + +  ++   + +   E+ +        C+         H ++                 
Sbjct: 121 YPELISYIEDITDYIKENRVPT---SRYCQ---------HPQI----------------P 152

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G      +   +                P G+   Y +  +          +     ++ 
Sbjct: 153 GMQCQLGRSHYIT---------------PDGKMYSYSESPSPEFVAKRPASRGGTPQSFS 197

Query: 595 GKLTEN-IVQAVSRDILAEGMMNATKAGYD---------IVLTVHDEIVCET-PDTDEFN 643
               +N +VQ    +     M  A +A Y          +V TVHD I  +   +T    
Sbjct: 198 PTEIKNYVVQGTGGEWTKAAMYLAVRAFYRRGNFGGMALLVNTVHDAIYLDASAETCHDA 257

Query: 644 ASMLYHLMTSNPSWAK-----GLPLKA 665
           A+ML   M    ++ +      LPL  
Sbjct: 258 AAMLEAAMFEASTYMEFWFKWKLPLGV 284


>gi|194100330|ref|YP_002003760.1| gp5 [Enterobacteria phage EcoDS1]
 gi|193201325|gb|ACF15804.1| gp5 [Enterobacteria phage EcoDS1]
          Length = 723

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 87/295 (29%), Gaps = 57/295 (19%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----------RVLSSNKKLTPQAIQVFN 278
           +  +    + L   L    G    D T+T             ++  +  +   + ++ + 
Sbjct: 337 VEFNPGSGDHLAKVLMER-GWEPVDFTDTGKPVVDDETLEHVKLPDAEAQDCVELVREYL 395

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS-HE 337
              +    A    N  ++ +  DGR+ G++   GA  TGR +        +P       E
Sbjct: 396 VVQKRIGQAAEGKNAWLKLVGPDGRMHGSINPCGAV-TGRATHSSPNMAQVPANGAPYGE 454

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL----AWMA 393
                           PDP                    V  D +G+E R L    A   
Sbjct: 455 TCRGAFGAAWNKKDGKPDP-----------------WIQVGVDASGLELRCLGNRAAPFD 497

Query: 394 GEQWKLKAFETGEDLY---VTTYARSFNVAPAQVTKDQ---RAIGK-----------VME 436
           G ++     E   D++         + NV   +   +    R   K             +
Sbjct: 498 GGEYAKTVVE--GDIHWANAVNAGLAPNVKRDKSNHEHEAFRNNAKTFIYAFLYGAGAAK 555

Query: 437 LALGYQGGAKA----FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           + L   GG K      +K    T    +    +  T  +  +W D EN  +W + 
Sbjct: 556 IGLIVGGGKKEGAALMKKFIEGTPAIKDLREAVSNTLISDSKWVDGENIVKWKRR 610


>gi|119478758|ref|XP_001259434.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
 gi|119407588|gb|EAW17537.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
          Length = 1109

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 86/288 (29%), Gaps = 35/288 (12%)

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
            ++  G++           PQ +P  + +     + + +   + ++       +   +++
Sbjct: 625 QVKQSGSTGEKSNRLGFILPQIIPMGTIT----RRAVENTWLTASNA--KANRVGSELKA 678

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTY 413
            + A  G   V AD+   E  + A + G+         A            G D++  T 
Sbjct: 679 MIKAPPGYVFVGADVDSQELWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA 737

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                ++        R   KV      Y  G K    +      +++             
Sbjct: 738 -HILGIS--------RNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSEKETQEVATKLYR 788

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
           E +      R + EN       + F+    E      R    R   L   + +A  +   
Sbjct: 789 ETKGTRTTRRILSENPFWRGGTESFVFNKLEEFADQER---PRTPALGAGITEALMRRFI 845

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           N  + +  +   +         + L L++ S   L+ R   + R  + 
Sbjct: 846 NKGSFMTSR---INWAIQSSGVDYLHLLIISMDYLIRRFNIDARLAIT 890


>gi|315282488|ref|ZP_07870892.1| DNA polymerase I [Listeria marthii FSL S4-120]
 gi|313613872|gb|EFR87612.1| DNA polymerase I [Listeria marthii FSL S4-120]
          Length = 143

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 44/168 (26%)

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               +   +  V E   ++ +  ++  +     I  +RR +P +                
Sbjct: 2   FIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILHRRRYIPEI--------------VS 45

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATK 619
           R+   R     R+ +NT                   +Q  + DI+ + M      + + K
Sbjct: 46  RNFNVRGF-AERTAMNTP------------------IQGSAADIIKKAMILMSERLKSEK 86

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
               ++L VHDE++ E P+ +      +   +M +       +PLK +
Sbjct: 87  LEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVD 132


>gi|260813766|ref|XP_002601587.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
 gi|229286886|gb|EEN57599.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
          Length = 1237

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 100/360 (27%), Gaps = 58/360 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +PR   +     + +     + ++       +   +++ V A  G   + AD+   E  
Sbjct: 804  IIPRVVTAGTVTRRAVEPTWLTASNA--RPDRVGSELKAIVQAPPGYHFIGADVDSQELW 861

Query: 388  VLAWMAGEQW--------------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            + A + G+                      +G DL+  T +              R   K
Sbjct: 862  IAAIL-GDANFAGFHGCTSFGWMTLQGKKSSGTDLHSKTASTI---------GISRDHAK 911

Query: 434  VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            V      Y  G    Q  A    L  N      +     ++   A    R   +   E +
Sbjct: 912  VFNYGRIYGAG----QPFAERLLLQFNHRMTQEEAGEKAKQMYAATKGVRENPDYEEEGS 967

Query: 494  IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                  G    RV  A       V   W     A    + +    I +       +    
Sbjct: 968  Y-----GAIIPRVVTAGTVTRRAVEPTWLTASNARPDRVGSELKAIVQAPPGYHFIGADV 1022

Query: 554  DKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLT-------REYTYG-----GKL--- 597
            D   L +    G +      G  +  ++    ++ +          T G      K    
Sbjct: 1023 DSQELWIAAILGDANFAGFHGCTSFGWMTLQGKKSSGTDLHSKTASTIGISRDHAKFVTS 1082

Query: 598  -TENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                +VQ+ + D L   ++      N         +++HDE+       D + A++   +
Sbjct: 1083 RVNWVVQSSAVDYLHLMLVCMRWLFNKYNIDGRFCISIHDEVRYLVQSEDRYRAALALQI 1142


>gi|262212339|gb|ACY35786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 19/177 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV--K 467
                  +           R  GK +   L Y GG       A  +  + +     +  K
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGK 110

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIED---LFIGTACERVKKAWRQKHSRVSELW 521
                  + D     +   ++     ++D      G     +    +   + + +LW
Sbjct: 111 ITQGLSGFADLNAAIQERAKSGVLKGLDDRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|70997278|ref|XP_753389.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|66851025|gb|EAL91351.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|159126884|gb|EDP52000.1| DNA polymerase gamma [Aspergillus fumigatus A1163]
          Length = 1135

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 29/222 (13%)

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
            ++  G++           PQ +P          + + +   + ++       +   +++
Sbjct: 651 QVKQSGSTGEKSNRLGFILPQIIPM----GTITRRAVENTWLTASNA--KANRVGSELKA 704

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTY 413
            + A  G   V AD+   E  + A + G+         A            G D++  T 
Sbjct: 705 MIKAPPGYVFVGADVDSQELWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA 763

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            +   ++        R   KV      Y  G K    +      +++         +   
Sbjct: 764 -QILGIS--------RNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSEKETQEVATNLYR 814

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           E +      R + EN       + F+    E      R +  
Sbjct: 815 ETKGTRTTRRILSENPFWRGGTESFVFNKLEEFADQERPRTP 856


>gi|31711656|ref|NP_853574.1| gp14 [Enterobacteria phage SP6]
 gi|31505660|gb|AAP48753.1| gp14 [Enterobacteria phage SP6]
 gi|40787031|gb|AAR90005.1| 13 [Enterobacteria phage SP6]
          Length = 849

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 355 DPLQIISDCV---RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           + + I +  +   R   IA +GK ++  D AG+E RVL+    +    +    G D++  
Sbjct: 542 NVVNIPARGLYPLRDLFIAGKGKMILGCDGAGLELRVLSHFMNDPEYQEIVLHG-DIHT- 599

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
                  +        +R + K    A  Y  G       A+  G+  +    +V
Sbjct: 600 HNQLKAGLP-------KRDMAKTFIYAFLYGSGIANL---AAVCGVTEDEMKEVV 644



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 41/131 (31%), Gaps = 32/131 (24%)

Query: 560 LMLPSGRSL--VYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN-----IVQAVSRDILAE 612
           + LPS   L       GN   YL        R    GG+L E+     ++Q      +  
Sbjct: 649 IELPSLARLRENVIAAGNKFGYLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSLCMKY 708

Query: 613 GMMN-----------ATKAGYDI-VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
            ++                G    V  VHDEI  E P+ +                    
Sbjct: 709 ALVKAFAVMRREGVALDNLGNPCGVANVHDEIQMEVPEEEVLYLDY-------------E 755

Query: 661 LPLKAEGYESK 671
           LP   EG+ES+
Sbjct: 756 LPFTLEGFESE 766


>gi|328479632|gb|EGF48820.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462]
          Length = 105

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY- 648
                 +Q  + DI+   M+   KA         ++L VHDE++ E P  +      L  
Sbjct: 19  TAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVP 78

Query: 649 HLMTSNPSWAKGLPLKAE 666
            +M S  S A  +PLK E
Sbjct: 79  KIMDSAVSLA--VPLKVE 94


>gi|289705267|ref|ZP_06501666.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289558017|gb|EFD51309.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 578

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 68/213 (31%), Gaps = 25/213 (11%)

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
           ++   +R    +G  +  Q +    R H                    +Q+ +  VR  V
Sbjct: 281 EYKALARLWTANGWHWLDQWIGDDGRFHAAYLVGGVVTGRWAAHGGGAMQVPAG-VRDAV 339

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA--RSFNVAPAQVTK 426
            A  G  L VAD + +E R+LA MA ++   +A  T  DLY       R+   A A    
Sbjct: 340 RADPGWTLTVADASQVEPRILAAMAADEALARAGTT-PDLYREVAEQGRAAGTALAD--- 395

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R   K+  L   Y           STTG +     HL         +  A        
Sbjct: 396 --RGRAKIALLGAMYG----------STTGDSAALMPHL------RRLYPRAIGLLERAA 437

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                      ++G       + W++  S V  
Sbjct: 438 SVGEGGGQVSTWLGRWSPAPGRKWQESVSDVGT 470


>gi|289178750|gb|ADC85996.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 672

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E         +   G  VD A    L ++   E  +++Q       G   + +  +
Sbjct: 559 LRDIELPTSVALFHMEHTGASVDRARLDELLEMFTDESNRMEQICYE-AAGHEVNLQSPK 617

Query: 238 KLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +L   LF E GL+    T+    +T ++ L++    + +  + 
Sbjct: 618 QLGVVLFEEMGLNPTKKTKRGSYSTNRKALTTLYATSEEGSRP 660


>gi|262212393|gb|ACY35813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 354 PDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFETGEDLYVT 411
           P+  Q+ SD   R   +A+ G+ +V ADL+GIE R+L+  +A             D++  
Sbjct: 1   PNLAQVPSDLTYRRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQL 60

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
              +             R + K +  A     G
Sbjct: 61  NADKI---------GITRKLVKTVTYAFLCGAG 84


>gi|148807504|gb|ABR13556.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAKMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+E R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLELRMLARYMRDE 185


>gi|317034839|ref|XP_001401279.2| DNA polymerase gamma [Aspergillus niger CBS 513.88]
          Length = 1135

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 31/222 (13%)

Query: 309 QFLGASRTGRWSGCV--FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           +  G + +G+    +    PQ +P          + + +   + ++       +   +++
Sbjct: 651 EVRGLTSSGKTDHRLGFILPQIIPM----GTITRRAVENTWLTASNA--KGNRVGSELKA 704

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTY 413
            + A  G   V AD+   E  + A + G+         A            G D++  T 
Sbjct: 705 MIKAPPGYSFVGADVDSQELWI-ASLVGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA 763

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            +   ++        R   KV      Y  G K    +      +++            +
Sbjct: 764 -QILGIS--------RNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSERQTQEVATKLYK 814

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           E +      R + E        + F+    E   +  R +  
Sbjct: 815 ETKGTRTTRRILCEGPFWRGGTESFVFNKLEEFAEQERPRTP 856


>gi|121713882|ref|XP_001274552.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
 gi|119402705|gb|EAW13126.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
          Length = 1134

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 29/205 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++       +   +++ + A  G   V AD+   E
Sbjct: 670 PQIIPMGTIT----RRAVENTWLTASNA--KANRVGSELKAMIKAPPGYVFVGADVDSQE 723

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G D++  T      ++        R   
Sbjct: 724 LWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-HILGIS--------RNDA 773

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++        +   +E + A    R + EN    
Sbjct: 774 KVFNYGRIYGAGLKFAATLLRQFNPSMSEKETQEVASKLYKETKGARTSRRILSENPFWR 833

Query: 493 AIEDLFIGTACERVKKAWRQKHSRV 517
              + F+    E   +  R +   +
Sbjct: 834 GGTESFVFNKLEEFAEQERPRTPAL 858


>gi|134081963|emb|CAK97229.1| unnamed protein product [Aspergillus niger]
          Length = 1108

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 31/222 (13%)

Query: 309 QFLGASRTGRWSGCV--FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           +  G + +G+    +    PQ +P          + + +   + ++       +   +++
Sbjct: 624 EVRGLTSSGKTDHRLGFILPQIIPM----GTITRRAVENTWLTASNA--KGNRVGSELKA 677

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTY 413
            + A  G   V AD+   E  + A + G+         A            G D++  T 
Sbjct: 678 MIKAPPGYSFVGADVDSQELWI-ASLVGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA 736

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            +   ++        R   KV      Y  G K    +      +++            +
Sbjct: 737 -QILGIS--------RNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSERQTQEVATKLYK 787

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           E +      R + E        + F+    E   +  R +  
Sbjct: 788 ETKGTRTTRRILCEGPFWRGGTESFVFNKLEEFAEQERPRTP 829


>gi|194039637|ref|XP_001927099.1| PREDICTED: DNA polymerase subunit gamma-1 [Sus scrofa]
          Length = 1224

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 95/344 (27%), Gaps = 49/344 (14%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 825  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 882

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 883  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 933

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++        R  + +  E   
Sbjct: 934  FNYGRIYGAG----QPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSD-EGEW 988

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK--RRDVPLVYMK 552
                +    +R +  W        +L     +A  ++      ++A +            
Sbjct: 989  LVRELDLPVDRTEDGWISLQ----DLRKIQREASRKSRRKKWEVVAERAWTGGTESEMFN 1044

Query: 553  KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
            K ++      P    L  R                +R           +VQ+ + D L  
Sbjct: 1045 KLESIATSDTPRTPVLGCRISRALEPSTVQGEFMTSR--------VNWVVQSSAVDYLHL 1096

Query: 613  GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             ++                +++HDE+     + D + A++   +
Sbjct: 1097 MLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQV 1140


>gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
 gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
          Length = 207

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 31/175 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++         P VLK  L +  +  + H +
Sbjct: 25  IDTETLGLNPHRDRLCV--VQLSTGDGTADVVQIPQAGPEPVVLKRVLADPGILKIFHFA 82

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARS----NGLPSAL-KAVGEALKLSSQKMEEGK 127
            F+  VL      +  P++       LAR+    +GL   + + VG  L    Q  + G 
Sbjct: 83  RFDVAVLYRALGVMPSPVYCTKIASKLARTYTDRHGLKDVVRELVGVDLSKQQQSSDWGA 142

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           E ++                       +   +Y   DV       +RL+ + ++E
Sbjct: 143 ETLS-----------------------QAQLDYAASDVLHLHAARERLDAMLARE 174


>gi|156539953|ref|XP_001602202.1| PREDICTED: similar to AT02241p, partial [Nasonia vitripennis]
          Length = 1031

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 86/611 (14%), Positives = 189/611 (30%), Gaps = 105/611 (17%)

Query: 91  HRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             W+     +  N  L      + +   +    +     L  +F      E    +  P+
Sbjct: 396 DPWMWDEDWSIKNMNLKKGYDKIWKITTIIPVTVIVKTILNKQFRYLHKTENFLPKKLPH 455

Query: 150 HREAWRLFGEYCK----------GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                  + + CK            ++ +  I  +L  L+ ++  L++    I + G+  
Sbjct: 456 MPGYPNWYRKLCKKNKINVFPRTQQLSTSMLITPKLLNLTWEQYPLYH----IKNHGWGF 511

Query: 200 DVALAHTLNQIV-DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
              L   LN+        +L  +       L SS++CL KLK+  F +       L +  
Sbjct: 512 ---LVKDLNKCDIKPSDCELLSQTT--AKKLQSSNQCLTKLKS--FDKN--FKPSLPDNK 562

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTLQFLGASRT 316
            +               V +   +   +   K  L+++  + +    +     +   +R 
Sbjct: 563 IENFFFKLPHKNGILFNVGSPLSKDFLNNFSKNILDSITTSTSRIIEISKMSSYWKNNRD 622

Query: 317 GRWSGCVFPP---QN---------------LPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
              S  V      QN               +P+   S     + +     + ++     +
Sbjct: 623 RILSQLVIWLDSKQNVNSKNSTNYINFGAIIPQVIVSGTLTRRAVEPTWMTASNA--HCE 680

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ----------------WKLKAF 402
            I   +R  + A  G  ++ AD+   E  + A + G+                   +   
Sbjct: 681 RIGSELRGIINAPSGYSIIGADVDSQELWI-ASIIGDAFKKDIKIHGSTPFSWMTLIGNK 739

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T                R   KV+  A  Y  G K  +++      ++   
Sbjct: 740 SDGTDMHSVTAKAI---------GINRDQAKVLNYARIYGAGQKFAERLLKQFNPSITDK 790

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +K+          + + R  ++   E+    L+  T+ E  K         +S++  
Sbjct: 791 EAALKSKHI-YLMTKGKKYYRLKKQYVSENLSNKLY--TSYEAFK---------ISQIHK 838

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           +L     +  +      +     +  +  + + +   L     R+L Y     N  +L  
Sbjct: 839 KLRDEVFEKGKWIGGSESVMFNSLEEIAEQNEPSTPFLNCRLSRALEYEK---NEKFL-- 893

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                             +VQ+ + D   ++   M    K    + L+ HDE+    P  
Sbjct: 894 ------------PTKINWVVQSGAVDFLHLILVTMRWLMKDKARLCLSFHDEVRYLVPSE 941

Query: 640 DEFNASMLYHL 650
            ++NA++  H+
Sbjct: 942 YKYNAALAMHV 952


>gi|148807579|gb|ABR13590.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 31/169 (18%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTPQAIQVFNNRMRASRSA 287
             +    +++   L    G+  +  TE     V     +    P+A  ++   M   R+A
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKLQTEKGAIIVNEKVLEGIDIPEAEMIYEYLMLQKRAA 104

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             ++++ +     DGR+ G +   GA  TGR +        +P                 
Sbjct: 105 --QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQVP----------------- 143

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               S P          RS     EG KL+  D +G+  R+LA    ++
Sbjct: 144 --SVSAPY-----GRECRSFWCVPEGHKLIGCDASGLXLRMLAHYMRDE 185


>gi|229472567|gb|ACQ72798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 12/120 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                       ++    R  GK +   L Y GG       A  +          +++ S
Sbjct: 61  ALA---------EICGTDRKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGEEIRSRS 111


>gi|330883874|gb|EGH18023.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 108

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   I  +G  VD  L    +  +  + T L++E  ++  G   +    ++L
Sbjct: 1   DIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSPKQL 59

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
              L+ + G+ +   T T       +   L+ +   +    ++
Sbjct: 60  GVILYEKLGMPILSKTATGQASTAEAVLALSWERPHLAPLMLK 102


>gi|262342137|gb|ACY54579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELSLPSPNQVMVGADLAGIELRMLSHFLARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  AL Y  G +            L++ A   K   
Sbjct: 61  VNADKI---------GISRKLVKTVTYALLYGAGDEKIGHSCDKL---LSSKAAKKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|1420721|emb|CAA99652.1| MIP1 [Saccharomyces cerevisiae]
          Length = 1280

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 98/342 (28%), Gaps = 91/342 (26%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + + +   + ++       I   +++ V A  G   V AD+   E  
Sbjct: 669 IIPKIVPMGTITRRAVENAWLTASNA--KANRIGSELKTQVKAPPGYCFVGADVDSEELW 726

Query: 388 VLAWMAGEQ-----------WKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W         G DL+  T          Q+    R   K+
Sbjct: 727 I-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA---------QILGCSRNEAKI 776

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  GA                 + L+K  +     E+ +     + EN      
Sbjct: 777 FNYGRIYGAGA--------------KFASQLLKRFNPSLTDEETKKIANKLYEN------ 816

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +  KK W      +  L+N+L    EQ                        
Sbjct: 817 -TKGKTKRSKLFKKFWYGGSESI--LFNKLESIAEQ------------------------ 849

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL---- 610
                   P    L     G   +Y  +  ++  R  ++        +Q+   D L    
Sbjct: 850 ------ETPKTPVL-----GCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLC 896

Query: 611 --AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              E ++        + +++HDEI     + D++ A+M   +
Sbjct: 897 CSMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQI 938


>gi|83578108|ref|NP_014975.2| Mip1p [Saccharomyces cerevisiae S288c]
 gi|1706509|sp|P15801|DPOG_YEAST RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|1163066|emb|CAA89977.1| MIP1 [Saccharomyces cerevisiae]
 gi|285815200|tpg|DAA11093.1| TPA: Mip1p [Saccharomyces cerevisiae S288c]
          Length = 1254

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 98/342 (28%), Gaps = 91/342 (26%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + + +   + ++       I   +++ V A  G   V AD+   E  
Sbjct: 643 IIPKIVPMGTITRRAVENAWLTASNA--KANRIGSELKTQVKAPPGYCFVGADVDSEELW 700

Query: 388 VLAWMAGEQ-----------WKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W         G DL+  T          Q+    R   K+
Sbjct: 701 I-ASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA---------QILGCSRNEAKI 750

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  GA                 + L+K  +     E+ +     + EN      
Sbjct: 751 FNYGRIYGAGA--------------KFASQLLKRFNPSLTDEETKKIANKLYEN------ 790

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +  KK W      +  L+N+L    EQ                        
Sbjct: 791 -TKGKTKRSKLFKKFWYGGSESI--LFNKLESIAEQ------------------------ 823

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL---- 610
                   P    L     G   +Y  +  ++  R  ++        +Q+   D L    
Sbjct: 824 ------ETPKTPVL-----GCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLC 870

Query: 611 --AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              E ++        + +++HDEI     + D++ A+M   +
Sbjct: 871 CSMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQI 912


>gi|262212261|gb|ACY35747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKLAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|169835973|ref|ZP_02869161.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 180

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 10/127 (7%)

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            AQVT +QR   KV+   + Y         +++ TG++       +       ++ +   
Sbjct: 1   MAQVTSNQRRNAKVINFGVLYGMSP---HGLSAATGMSFIEAKKFID------DYFNLRR 51

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
             R   E   E A  + ++ T   R +     K S    +     +A       G     
Sbjct: 52  PIREFIEETLEKAKNEGYVTTYFGRRRPTPDVKSSNFM-VREAAKRAAANMPIQGTEADL 110

Query: 541 RKRRDVP 547
            KR  + 
Sbjct: 111 MKRAMLR 117



 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDI---VLTVHDEIVCETPDTDEFNASMLYHLMTS 653
                +Q    D++   M+   +   ++   +L +HD I+ E P  +      +      
Sbjct: 98  AANMPIQGTEADLMKRAMLRTEEKLGNLGEQILQIHDSILVECPKKNADKVVEILRFEME 157

Query: 654 NPSWAKGLPLKAE 666
           + +    + LK +
Sbjct: 158 SVAPELDIKLKVD 170


>gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
 gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
          Length = 204

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 24/193 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+    ++  + L      D    L     D   P  LK  L +  V  + H +
Sbjct: 23  VDTEAMGLNAMRDN--LTLVQVSSGDGTAHLVQLTRDYDCP-NLKALLTDPKVLKIFHFA 79

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  ++K    +   PI        LAR+      LK V  E   +   K ++  +   
Sbjct: 80  RFDVVMMKRWMGITCAPIWCTKIASRLARTYTDRHGLKDVAREVAGVDMSKAQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                               +      +Y   DV    +I   LE +  +E  L      
Sbjct: 138 -----------------GQDKLTDAQIQYAASDVLYLHQIKAGLEAMLEREGRLELAQAC 180

Query: 192 INDRGYCVDVALA 204
            +      D+ LA
Sbjct: 181 FDFLPIRADLDLA 193


>gi|262212259|gb|ACY35746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 12/117 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFET-GEDLYV 410
           P+  Q+ S    RS    S+    V +D +G+E R L   ++       A E    D++ 
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDTSGLELRCLGHYLSRYDGGKFAEEGVNGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                 +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|254261387|ref|ZP_04952441.1| 38L [Burkholderia pseudomallei 1710a]
 gi|254220076|gb|EET09460.1| 38L [Burkholderia pseudomallei 1710a]
          Length = 800

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 132/430 (30%), Gaps = 68/430 (15%)

Query: 80  LKACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           L+A    D P    W       R +  P       +  K +    + G   +  F K ET
Sbjct: 219 LRAYLPDDCPFDFNWSN-----RYHLSPLIFGGTVKYQKRTETLDDAGN--LQYFSKEET 271

Query: 139 HECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFKRL-EPLSSKEQELWYLDQTINDRG 196
           H  L D                C   DV      F ++ EP +  ++EL + D       
Sbjct: 272 HYLLVDGT-----------TMECGRWDVAYAAGAFVQVDEPATELDRELGHYDDE----- 315

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE-KLKTWLFLETGLHLEDLT 255
                     L+Q+      K   E ++    +    R  +  ++ + +   G    D  
Sbjct: 316 ---SGKWTVPLSQVARFAGGKNKGEPKTKKIKVPDLERGPKTAIRDFFYKFPGYTTPD-- 370

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                         TP    V ++ + A  +  +     +  +   G+  GT       +
Sbjct: 371 --------EIWASSTPGLYSVSSDVIEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEK 422

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS---DCVRSCVIASE 372
           TG   G       +      H++++   T        DP+   +       V+S  ++  
Sbjct: 423 TGVQKGM---LTLVGDDGIIHQKINHTSTVTARFSEQDPNLQNVSGAGKSQVKSVFVSRW 479

Query: 373 --GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKD-- 427
               ++V +D   +E  + A ++G +  ++    G D++    ++   +     V K   
Sbjct: 480 LADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYEDAVLKCKG 539

Query: 428 --------------QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                         +R   K        +        +A++TG+ L     L+K   A  
Sbjct: 540 DPSRGVAPLPEWEKKRKGAKEFSFQ---RAYGAGAAGIAASTGMLLEDVQALIKAEEARY 596

Query: 474 EWEDAENFCR 483
               A N  +
Sbjct: 597 PELSAYNAAK 606


>gi|76810071|ref|YP_333053.1| hypothetical protein BURPS1710b_1649 [Burkholderia pseudomallei
           1710b]
 gi|76579524|gb|ABA48999.1| 38L [Burkholderia pseudomallei 1710b]
          Length = 774

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 132/430 (30%), Gaps = 68/430 (15%)

Query: 80  LKACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           L+A    D P    W       R +  P       +  K +    + G   +  F K ET
Sbjct: 193 LRAYLPDDCPFDFNWSN-----RYHLSPLIFGGTVKYQKRTETLDDAGN--LQYFSKEET 245

Query: 139 HECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFKRL-EPLSSKEQELWYLDQTINDRG 196
           H  L D                C   DV      F ++ EP +  ++EL + D       
Sbjct: 246 HYLLVDGT-----------TMECGRWDVAYAAGAFVQVDEPATELDRELGHYDDE----- 289

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE-KLKTWLFLETGLHLEDLT 255
                     L+Q+      K   E ++    +    R  +  ++ + +   G    D  
Sbjct: 290 ---SGKWTVPLSQVARFAGGKNKGEPKTKKIKVPDLERGPKTAIRDFFYKFPGYTTPD-- 344

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                         TP    V ++ + A  +  +     +  +   G+  GT       +
Sbjct: 345 --------EIWASSTPGLYSVSSDVIEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEK 396

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS---DCVRSCVIASE 372
           TG   G       +      H++++   T        DP+   +       V+S  ++  
Sbjct: 397 TGVQKGM---LTLVGDDGIIHQKINHTSTVTARFSEQDPNLQNVSGAGKSQVKSVFVSRW 453

Query: 373 --GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKD-- 427
               ++V +D   +E  + A ++G +  ++    G D++    ++   +     V K   
Sbjct: 454 LADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYEDAVLKCKG 513

Query: 428 --------------QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                         +R   K        +        +A++TG+ L     L+K   A  
Sbjct: 514 DPSRGVAPLPEWEKKRKGAKEFSFQ---RAYGAGAAGIAASTGMLLEDVQALIKAEEARY 570

Query: 474 EWEDAENFCR 483
               A N  +
Sbjct: 571 PELSAYNAAK 580


>gi|327292550|ref|XP_003230973.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
 gi|326466779|gb|EGD92232.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
          Length = 1137

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 61/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++           S+  P   +   +++ V A  G   V AD+   E
Sbjct: 671 PQVIPMGTITRRAVENT-----WLTASNAKP-NRVGSELKAMVRAPPGYVFVGADVDSEE 724

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 725 LWI-ASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNA 774

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++            +E +      R + EN    
Sbjct: 775 KVFNYGRIYGAGLKFAATLLRQFNPSMSETETKAVAAKLYKETKGTRTTRRILSENPFLR 834

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 835 GGTESFVFNKLEEFAEQERPRTP 857


>gi|262212327|gb|ACY35780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 19/177 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV--K 467
                  +           R  GK +   L Y GG       A  +  + +     +  K
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGK 110

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIED---LFIGTACERVKKAWRQKHSRVSELW 521
                  + D     +   ++     ++D      G     +    +   + + +LW
Sbjct: 111 IMQGLSGFADLNAAIQERAKSGVLKGLDDRPIRLQGKNHAALNYLLQSAGAIICKLW 167


>gi|198433586|ref|XP_002125927.1| PREDICTED: similar to GK24652 [Ciona intestinalis]
          Length = 1122

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 97/311 (31%), Gaps = 54/311 (17%)

Query: 349  SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM----AGEQWKLKAF-- 402
               S+P  L  I   +++ V A  G   V AD+   E  + + +    + ++    A   
Sbjct: 743  LTASNP-QLDRIGSELKAMVQAPPGFCFVGADVDSQELWIASLLGDASSAKEHGCTALSW 801

Query: 403  -------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                   + G DL+ TT A              R   KV      Y  G K+  +     
Sbjct: 802  MTLRGNKKEGTDLHSTTAASI---------GISRDQAKVFNYGRMYGAGKKSSLRSLMQF 852

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
              +L+    + K N   + +   +   ++         I+   I    E +   +     
Sbjct: 853  NKDLSREECIAKVN---KLYGITKGEVQYKLSRDALWIIQKTGIELNSEAMTSGY-ASFD 908

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             V+ + N  ++A   T    +  +   RR    +          +           D   
Sbjct: 909  DVTLIQNVANEASNYTARINRNDLVCGRRWHGGIESHMFNKVEEISNSKTPKTPALDCKI 968

Query: 576  NRSYLNTTTRQLTREYTYGGKLTEN--------IVQAVSRD---ILAEGM---MNATKAG 621
            +R+                GK+  N        +VQ+ + D   +L   M   +   K  
Sbjct: 969  SRA-------------LEPGKVNGNFVTTRMNWVVQSSAVDYLHLLLVSMRWLIEKYKLD 1015

Query: 622  YDIVLTVHDEI 632
               VL++HDE+
Sbjct: 1016 CRFVLSIHDEV 1026


>gi|47934632|gb|AAT39754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 79

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIE 385
             R H +++           S P+  Q+        +  R      +G  LV  D +G+E
Sbjct: 6   TGRIHGKVNTCGAVTGRMTHSSPNLAQVPASHSPYGEDCRELFTVEDGYCLVGMDASGLE 65

Query: 386 ARVLAWMAGEQ 396
            R+LA    ++
Sbjct: 66  LRMLAHYMNDE 76


>gi|117530351|ref|YP_851194.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
 gi|117165963|dbj|BAF36271.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
          Length = 427

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/368 (12%), Positives = 107/368 (29%), Gaps = 28/368 (7%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVI---LFAFGFDDHPV-ELWDCVHDPVMPQVLKE 59
           L +D+ET    D+   G    A D   +   L    +  + +  + D       P  +++
Sbjct: 32  LAMDYETY--ADVETWGPQASALDPHTLVARLLQINWPGNAIPYVIDL-RALDWPIEIRD 88

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA-------- 111
              ++ V  V  N+ FE  V +A + +        C +VL +  G  +  KA        
Sbjct: 89  IWLDSSVRKVCFNARFEALVTQATWGVW--PDNLYCAMVLFQQIGAATGFKAGRTRGYSY 146

Query: 112 ---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
              V + L     K     +        +      D   P +   +          +   
Sbjct: 147 GSLVRDILDTPLNKELASSDWSGELTPAQLQYAALDVGAPRNSN-YTSLLLEAYALLRNE 205

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDV----ALAHTLNQIVDVERTKLDQELES 224
                 +  +   +Q  +     +   G  +++    +   T    +D  + ++    + 
Sbjct: 206 LLYTYEMPQVEEIDQAAFMEIARMEWNGLPINMNVMGSFLSTAQSELDNYKLRMSAHFDF 265

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLS-SNKKLTPQAIQVFNNRM 281
               +V  +  + ++   +  +    L + T   +  Q  L      L  + ++     +
Sbjct: 266 SVDQVVDWNSGVPQVTLVVPDKITALLNNPTALVSRIQEFLPVKLDNLQQKTLETVLREL 325

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            +      +     E    D  ++     L   +  +     +     PR    H     
Sbjct: 326 DSEDDGDGEDGATSEESIRDLGIQVISDLLRYKKLTKMVSTNWAALINPRTGNVHARYQT 385

Query: 342 IITHLPTS 349
           I T     
Sbjct: 386 IGTSTGRM 393


>gi|255953429|ref|XP_002567467.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589178|emb|CAP95318.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1142

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 59/205 (28%), Gaps = 29/205 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   +++ + A  G   V AD+   E
Sbjct: 670 PQVIPM----GTITRRAVENTWLTASNA--KANRVGSELKAMIKAPPGYSFVGADVDSQE 723

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  + +    ++        R   
Sbjct: 724 LWI-ASLVGDASFQIHGGNAIGFMCLEGSKAEGTDLHSRSAS-ILGIS--------RNDA 773

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +L          +  +E +      R + E     
Sbjct: 774 KVFNYGRIYGAGVKFAATLLRQFNPSLTEKQTQETAKNLYKETKGTRTSRRLLSETPFWR 833

Query: 493 AIEDLFIGTACERVKKAWRQKHSRV 517
              + F+    E      R +   +
Sbjct: 834 GGTESFVFNKLEEFADQERPRTPAL 858


>gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/398 (13%), Positives = 104/398 (26%), Gaps = 69/398 (17%)

Query: 148 PNHREAWRLFG----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-------NDRG 196
            N    W  +     +YC  D  VT  +++ L+       +   L+  +          G
Sbjct: 51  KNDSNDWSTYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASG 110

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESL--------------------------TYGLV 230
           +  D+  A  +   +  E   +   +  +                          T    
Sbjct: 111 FRFDMDAAVRVRAQLQDEFDSITNAIAQIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTD 170

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    + +   L    G     +TET   +V  +             N+          
Sbjct: 171 FNPTSRQNIAWALQTFRGARFTRVTETGKPKVDEATLSEVRDIALSAGNQQL-------- 222

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                +      RL    ++LG  +    +   F    +      H     + T    + 
Sbjct: 223 ----HDECEMFIRLLTLQKWLG--QLSEGTNSWFNS--IEGDGCIHHSC-TLSTQTGRNA 273

Query: 351 TSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWM--AGEQWKLKAFETGED 407
              P+  Q++S    R   +   G  +V ADL G+E R+L     A +           D
Sbjct: 274 HRGPNLGQVVSAPWARELFVPHPGHIMVGADLEGLELRLLGHYLAAFDSGSFAEVVVNGD 333

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++     R             R   K +  A  Y  G     K+  +    L+       
Sbjct: 334 IHQQNADRV---------GCTRTQVKTLTYAFIYGAGD---VKLGHSLQPELSDAQKKTL 381

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                 ++ DA      + +           +     R
Sbjct: 382 GGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419


>gi|16758292|ref|NP_445980.1| DNA polymerase subunit gamma-1 [Rattus norvegicus]
 gi|5912570|emb|CAB56207.1| DNA polymerase gamma [Rattus norvegicus]
          Length = 1216

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 96/349 (27%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 817  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 874

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   KV
Sbjct: 875  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKV 925

Query: 435  MELALGYQGGAKAFQKMASTTG--LNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G    +++       L+    A         T          +      Q 
Sbjct: 926  FNYGRIYGAGQSFAERLLMQFNHRLSRQEAADKAQQMYAVTKGLRRYRLSDDGEWLVKQL 985

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            N P    ED     + + ++K  R+   +    W +     E+    G            
Sbjct: 986  NVPVDRTEDG--WVSLQDLRKIRREASRK--SRWKKWEVVTERAWTGGTESEM------- 1034

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                 K ++  +   P    L           +       +R           +VQ+ + 
Sbjct: 1035 ---FNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFMTSR--------VNWVVQSSAV 1083

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D + A++   +
Sbjct: 1084 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1132


>gi|17365997|sp|Q9QYV8|DPOG1_RAT RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|5912568|emb|CAB56206.1| DNA polymerase gamma [Rattus norvegicus]
 gi|149057256|gb|EDM08579.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
 gi|149057257|gb|EDM08580.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
          Length = 1216

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 96/349 (27%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 817  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 874

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   KV
Sbjct: 875  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKV 925

Query: 435  MELALGYQGGAKAFQKMASTTG--LNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G    +++       L+    A         T          +      Q 
Sbjct: 926  FNYGRIYGAGQSFAERLLMQFNHRLSRQEAADKAQQMYAVTKGLRRYRLSDDGEWLVKQL 985

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            N P    ED     + + ++K  R+   +    W +     E+    G            
Sbjct: 986  NVPVDRTEDG--WVSLQDLRKIRREASRK--SRWKKWEVVTERAWTGGTESEM------- 1034

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                 K ++  +   P    L           +       +R           +VQ+ + 
Sbjct: 1035 ---FNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFMTSR--------VNWVVQSSAV 1083

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D + A++   +
Sbjct: 1084 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1132


>gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
 gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
          Length = 209

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 31/175 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++         P+ LK  L +  +  + H +
Sbjct: 27  IDTETLGLNPHRDRLCV--VQISRGDGSADVVQIRPGDPAPERLKAVLADPQIVKIFHFA 84

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARS----NGLPSAL-KAVGEALKLSSQKMEEGK 127
            F+  VL   F  + +P++       LAR+    +GL   + + VG  L    Q  + G 
Sbjct: 85  RFDLAVLFKAFGVMPMPVYCTKVASKLARTYTDRHGLKDVVRELVGVDLSKQQQSSDWGA 144

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           E ++                       +   +Y   DV       +RL+ + ++E
Sbjct: 145 EALS-----------------------QAQIDYAASDVLHLHAARERLDAMLARE 176


>gi|229472297|gb|ACQ72663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 12/117 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAG-EQWKLKAFETGEDLYV 410
           P+  Q+ S    RS    S+    V +D +G+E R L   ++  +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDSGKFAEEVVNGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                 +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|149690747|ref|XP_001503097.1| PREDICTED: similar to DNA polymerase subunit gamma-1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Equus
            caballus]
          Length = 1219

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 92/349 (26%), Gaps = 59/349 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 820  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSEMKAMVQAPPGYVLVGADVDSQELW 877

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 878  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 928

Query: 435  MELALGYQGGA--KAFQKMASTTGLNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G        M     L     A         T          E      + 
Sbjct: 929  FNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLVREL 988

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
            + P    ED     + + ++K  R+   +    W +     E+    G            
Sbjct: 989  DLPVDRTEDG--WVSLQDLRKIQREASRK--SNWKKWEVVAERAWMGGTESEM------- 1037

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                 K ++      P    L  R                +R           +VQ+ + 
Sbjct: 1038 ---FNKLESIATSDTPCTPVLGCRISRALEPSAVQGEFMTSR--------VNWVVQSSAV 1086

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            D L   ++                +++HDE+     + D + A++   +
Sbjct: 1087 DYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1135


>gi|222871907|gb|EEF09038.1| predicted protein [Populus trichocarpa]
          Length = 161

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 18/109 (16%)

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
           GR L   D+       N   RQ               +Q  + D++   M+         
Sbjct: 53  GRRLWLPDIN----GGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVQDWLEGE 103

Query: 619 KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666
           + G   ++ VHDE+V E P  + E     L  LM +  +    +PL AE
Sbjct: 104 RLGTRQIMQVHDELVLEVPQAELELVRVKLPELMCAVAT--LNVPLVAE 150


>gi|262212243|gb|ACY35738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 16/119 (13%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFETG---EDL 408
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        F  G    D+
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDG--GKFAEGVVNGDI 58

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +       +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 59  HAALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|1129171|emb|CAA88012.1| mitochondrial DNA polymerase gamma [Schizosaccharomyces pombe]
          Length = 1018

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 26/186 (13%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP          + + +   + ++       +   +++ + A +G   V AD+   E  
Sbjct: 631 ILPCIIPMGTVTRRAVENTWLTASN--SKKNRLGSELKAMIRAPDGYTFVGADVDSEELW 688

Query: 388 VLAWMAGEQWKLK------------AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++A M   Q++L                 G DL+  T A    V+        R   KV 
Sbjct: 689 IVALMGDSQFRLHGATALGMMTLEGKKSEGTDLHSKTAA-ILGVS--------RDSAKVF 739

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                Y  G K    +       L T         A + +   +     M +   E  + 
Sbjct: 740 NYGRLYGAGLKHTTLLLMQMNPTLKTAEA---KELAKKLYASTKGVKSKMSKRLQEMGLP 796

Query: 496 DLFIGT 501
            L   +
Sbjct: 797 KLTFWS 802


>gi|63054429|ref|NP_588025.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe 972h-]
 gi|20141418|sp|Q12704|DPOG_SCHPO RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|157310502|emb|CAB76231.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe]
          Length = 1018

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 26/186 (13%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP          + + +   + ++       +   +++ + A +G   V AD+   E  
Sbjct: 631 ILPCIIPMGTVTRRAVENTWLTASN--SKKNRLGSELKAMIRAPDGYTFVGADVDSEELW 688

Query: 388 VLAWMAGEQWKLK------------AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++A M   Q++L                 G DL+  T A    V+        R   KV 
Sbjct: 689 IVALMGDSQFRLHGATALGMMTLEGKKSEGTDLHSKTAA-ILGVS--------RDSAKVF 739

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                Y  G K    +       L T         A + +   +     M +   E  + 
Sbjct: 740 NYGRLYGAGLKHTTLLLMQMNPTLKTAEA---KELAKKLYASTKGVKSKMSKRLQEMGLP 796

Query: 496 DLFIGT 501
            L   +
Sbjct: 797 KLTFWS 802


>gi|2494178|sp|Q92076|DPOG1_CHICK RecName: Full=DNA polymerase subunit gamma-1; AltName:
           Full=Mitochondrial DNA polymerase catalytic subunit
 gi|1405384|gb|AAC60018.1| DNA polymerase gamma [Gallus gallus]
          Length = 647

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 100/342 (29%), Gaps = 44/342 (12%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP+   +     + +     + ++       +   +++ V    G  LV AD+   E  
Sbjct: 252 ILPQVVTAGTITRRAVEPTWLTASNA--RADRVGSELKAMVQVPPGYSLVGADVDSQELW 309

Query: 388 VL-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           +      A  AG                  G DL+  T A              R   KV
Sbjct: 310 IAAVLGEAHFAGMHGCTAFGWMTLQGKKSDGTDLHSKTAATV---------GISREHAKV 360

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G    +++       L  F H +    A E+ +      + ++  H     
Sbjct: 361 FNYGRIYGAGQPFAERL-------LMQFNHRLTQQQAREKAQQMYAVTKGIRRFHLSEEG 413

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
           E  ++    E              ++     +A  ++    K  +   R        +  
Sbjct: 414 E--WLVKELELAVDKAEDGTVSAQDVQKIQREAMRKSRRKKKWDVVAHRMWAGGTESEMF 471

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                + L +           +R  L     +     +        +VQ+ + D L   +
Sbjct: 472 NKLESIALSASPQTPVLGCHISR-ALEPAVAKGEFLTSR----VNWVVQSSAVDYLHLML 526

Query: 615 MNATKA--GYDI----VLTVHDEIVCETPDTDEFNASMLYHL 650
           ++       YDI     +++HDE+     + D + A++   +
Sbjct: 527 VSMKWLFEEYDINGRFCISIHDEVRYLVQEQDRYRAALALQI 568


>gi|239613015|gb|EEQ90002.1| DNA polymerase gamma [Ajellomyces dermatitidis ER-3]
 gi|327356950|gb|EGE85807.1| DNA polymerase gamma [Ajellomyces dermatitidis ATCC 18188]
          Length = 1146

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 30/236 (12%)

Query: 298 MNSDGRLRGTLQFLG--ASRTGRWSGCVF---PPQNLPRPSRSHEELDQIITHLPTSITS 352
           +++  R+R  L        R    S           LP+         + + +   + ++
Sbjct: 634 ISARDRIRSQLVVYHNDVERLKNKSISNPSFKQGYILPQIIPMGTITRRAVENTWLTASN 693

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL----KAF------ 402
                  +   +++ V A  G   V AD+   E  + A + G+         A       
Sbjct: 694 A--KANRVGSELKAMVTAPPGYVFVGADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLE 750

Query: 403 ---ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                G DL+  T  +   ++        R   KV      Y  G K    +      ++
Sbjct: 751 GTKAAGTDLHSKTA-KILGIS--------RNDAKVFNYGRIYGAGLKFAATLLRQFNPSM 801

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           +            +E +      + + +N       + F+    E   +  R +  
Sbjct: 802 SEHETKQVAAKLYKETKGVRTNRKILSDNPFWRGGTESFVFNKLEEFAEQERPRTP 857


>gi|258567122|ref|XP_002584305.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
 gi|237905751|gb|EEP80152.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
          Length = 1140

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 34/221 (15%)

Query: 316 TGRWSGCVFPPQN--------LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
             R SG   P QN        LP+         + + +   + ++       +   +++ 
Sbjct: 651 VRRLSGDEIP-QNRSSHLGFILPQIIPMGTITRRAVENTWLTASNA--KANRVGSELKAM 707

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYA 414
           V A  G   V AD+   E  + A + G+         A            G DL+  T  
Sbjct: 708 VKAPPGYAFVGADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA- 765

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           +   ++        R   KV      Y  G K    +      +++     +  ++   E
Sbjct: 766 KILGIS--------RNNAKVFNYGRIYGAGLKFAATLLRQFNPSISEEETKLIASNLYRE 817

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            +      + + E+       + F+    E      R +  
Sbjct: 818 TKGTRTMRKMISESPFWRGGTESFVFNKLEEFADQERPRTP 858


>gi|261189615|ref|XP_002621218.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
 gi|239591454|gb|EEQ74035.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
          Length = 1126

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 30/236 (12%)

Query: 298 MNSDGRLRGTLQFLG--ASRTGRWSGCVF---PPQNLPRPSRSHEELDQIITHLPTSITS 352
           +++  R+R  L        R    S           LP+         + + +   + ++
Sbjct: 614 ISARDRIRSQLVVYHNDVERLKNKSISNPSFKQGYILPQIIPMGTITRRAVENTWLTASN 673

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL----KAF------ 402
                  +   +++ V A  G   V AD+   E  + A + G+         A       
Sbjct: 674 A--KANRVGSELKAMVTAPPGYVFVGADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLE 730

Query: 403 ---ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                G DL+  T  +   ++        R   KV      Y  G K    +      ++
Sbjct: 731 GTKAAGTDLHSKTA-KILGIS--------RNDAKVFNYGRIYGAGLKFAATLLRQFNPSM 781

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           +            +E +      + + +N       + F+    E   +  R +  
Sbjct: 782 SEHETKQVAAKLYKETKGVRTNRKILSDNPFWRGGTESFVFNKLEEFAEQERPRTP 837


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 19/126 (15%)

Query: 6   IDFET----RSPIDLTKCGICKYAEDVCVILFAFGF-----DDHPVELWDCVHD-----P 51
           +D ET    RS   ++  G+ +   D  +    +       D  PV +     +     P
Sbjct: 28  VDVETTGLGRSDRVIS-AGVYQLDPDGEITDHWYTLVNPQRDPGPVWIHGLTSEVLAGAP 86

Query: 52  VMPQVLKEALEN-TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPS 107
             P+V  E  E   D  +VAHN+ F+  ++   F    L  P+ + +CT+VLAR   LP 
Sbjct: 87  TFPEVAAEFAERLRDRVLVAHNALFDWNMISREFSRAGLRAPVEQRLCTMVLARDLRLPL 146

Query: 108 ALKAVG 113
               + 
Sbjct: 147 PNGKLS 152


>gi|301768381|ref|XP_002919612.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Ailuropoda melanoleuca]
          Length = 1227

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 94/348 (27%), Gaps = 57/348 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 834  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 891

Query: 388  VLAWMAGEQ------------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            + A + G+             W         G DL+  T A              R   K
Sbjct: 892  IAAVL-GDAHFARMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAK 941

Query: 434  VMELALGYQGGAKAFQKMA-----STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
            +      Y  G    +++        T       A  +   +         +   W+   
Sbjct: 942  IFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLVRE 1001

Query: 489  HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                         + + ++K  R+   +    W +     E+    G             
Sbjct: 1002 LHLPVDRTEDGWVSLQDLRKIQREASRK--SRWKKWEVVAERAWMGGTESEM-------- 1051

Query: 549  VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                K ++  +   P    L  R                +R           +VQ+ + D
Sbjct: 1052 --FNKLESIAMSDTPCTPVLGCRISRALEPSAVQGEFMTSR--------VNWVVQSSAVD 1101

Query: 609  ILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             L   ++                +++HDE+     + D + A++   +
Sbjct: 1102 YLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1149


>gi|262212093|gb|ACY35663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELSLPSPNQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRELVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAEKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212075|gb|ACY35654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212091|gb|ACY35662.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212181|gb|ACY35707.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342239|gb|ACY54630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELSLPSPNQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRELVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAEKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|262212059|gb|ACY35646.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212071|gb|ACY35652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212081|gb|ACY35657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212101|gb|ACY35667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212145|gb|ACY35689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELSLPSPNQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRELVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAEKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|195031476|ref|XP_001988346.1| GH10618 [Drosophila grimshawi]
 gi|193904346|gb|EDW03213.1| GH10618 [Drosophila grimshawi]
          Length = 1147

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 106/362 (29%), Gaps = 72/362 (19%)

Query: 323  VFPPQNLPRPSRSH----------EELDQIITHLPTSITSD-----PDPLQIISDCVRSC 367
              P Q LP   RSH           ++    T    ++ S            I   +R+ 
Sbjct: 734  WLPAQQLPADLRSHAERTAYGAICPQVVVAGTLTRRAMESTWMTASNSRANRIGSELRAM 793

Query: 368  VIASEGKKLVVADLAGIEARVLAWMA-----GEQW--------KLKAFETGEDLYVTTYA 414
            V A  G KLV AD+   E  + + +      GE             +   G D++  T  
Sbjct: 794  VQAPPGYKLVGADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGSDMHSITA- 852

Query: 415  RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
                    +V    R   KV+  A  Y  G +  + +      +L+      K      +
Sbjct: 853  --------KVVGISRDHAKVLNYARIYGAGQQFAETLLQQFNPSLSATEAKAKA----MK 900

Query: 475  WEDAENFCRWMQENHP-EHAIEDLFIGTACERVKKAWRQKHSRVSELWNE--LHQAFEQT 531
               A    R  +        +ED          K+   Q++  + E+++        E  
Sbjct: 901  MFGATKGKRIYRLREEFHDELEDRTYSGY--EAKRLALQRNRSIGEVFHRPSWQGGTESA 958

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            + N    IA + +        +    L                  R   +   R      
Sbjct: 959  MFNRLEEIATREQPETPFLGCRLSRAL----------------ETRGDADQEQR------ 996

Query: 592  TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
             +       +VQ+ + D   ++   M           L+ HDE+     D   + A++  
Sbjct: 997  -FLPTRVNWVVQSGAVDFLHLMLVSMRWLLGPHARFCLSFHDELRYLVKDELAYKAALAM 1055

Query: 649  HL 650
            H+
Sbjct: 1056 HV 1057



 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 74/274 (27%), Gaps = 43/274 (15%)

Query: 42  VELWDCVHDPVMP---QVLKEALENTDVTIVAHNSYFERT-VLKACFNLDIPIHRWICTL 97
           VE  D             L          +V HN  ++R  +L+      +         
Sbjct: 223 VEPIDVAQSDRPHYMLDELIPLGSGAPGLVVGHNVSYDRARLLEQYL---LEDTGTRFVD 279

Query: 98  VLARSNGLPSALKAVGEALK------------LSSQKMEEGKELIARFCKGET-----HE 140
            ++    +          LK            L    +    ++   +C GE        
Sbjct: 280 TMSLHMCVSGVTSYQRAMLKSKKEPAAEDLDWLEQSSLNSLVDVHRLYCGGEPLSKEPRN 339

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------------EQELWYL 188
              +      R+ ++    YC GDV  T  I   L PL ++            E    YL
Sbjct: 340 IFVEGTLEQVRQQFQSLVNYCAGDVEATHRILTVLYPLYAERFPHPVTLAGMLEMGSAYL 399

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL----KTWLF 244
               N   Y  D  L     + +++E              L+   +  + L    + W  
Sbjct: 400 PVNSNWERYIRDAQL---AYEDLNIEAKYHLGRRAEEACALLHDEQYRQHLWLWDEDWSV 456

Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
            +  L      +      L   ++L  +  ++  
Sbjct: 457 QQLKLKQLPKRKQLPTVPLQDERQLNAEQRRLLQ 490


>gi|304389499|ref|ZP_07371462.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327309|gb|EFL94544.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 637

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L Y+ + +   G  +D        Q +  E     Q     + G   +    +
Sbjct: 529 LLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFD-SIGREVNLSSPK 587

Query: 238 KLKTWLFLETGLHLEDLTE 256
           +L+  LF +  L      +
Sbjct: 588 QLQEVLFTQLELPKTKKPK 606


>gi|315656745|ref|ZP_07909632.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492700|gb|EFU82304.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 637

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   E  L Y+ + +   G  +D        Q +  E     Q     + G   +    +
Sbjct: 529 LLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFD-SIGREVNLSSPK 587

Query: 238 KLKTWLFLETGLHLEDLTE 256
           +L+  LF +  L      +
Sbjct: 588 QLQEVLFTQLELPKTKKPK 606


>gi|262342115|gb|ACY54568.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 354 PDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFETGEDLYVT 411
           P+  Q+ SD   R   +A+ G+ +V ADL+GIE R+L+  +A             D++  
Sbjct: 1   PNLAQVPSDLTYRRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDVHQL 60

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
                 N     +T   R + K +  A  Y  G
Sbjct: 61  ------NTDKIGIT---RKLVKTVTYAFLYGAG 84


>gi|157138880|ref|XP_001647551.1| DNA polymerase gamma [Aedes aegypti]
 gi|108865347|gb|EAT32219.1| DNA polymerase gamma [Aedes aegypti]
          Length = 657

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 87/323 (26%), Gaps = 59/323 (18%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + +     + ++     + I   +R+ V A +G K+V AD+   E  
Sbjct: 247 IIPQVVVCGTLTRRAMEPTWMTASNA--QRERIGSELRAMVQAPKGYKMVGADVDSQELW 304

Query: 388 VLA-----WMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + +       AG              +     D++  T                R   KV
Sbjct: 305 IASVLGDGHAAGIHGATPLGWMTLSGSKAAKTDMHSVTAQAV---------GISRDHAKV 355

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +  A  Y  G    +++                       + +AE   + M+        
Sbjct: 356 INYARIYGAGQNFAERLLKQFN----------------PTFSEAEARSKAMKMFALTKGK 399

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR--RDVPLVYMK 552
           +  +       +K  +R +         E  +  +   +    +  + R           
Sbjct: 400 KFYY-------LKPDYRDEFPHKGYSGYEALKMAKVCNKAVDEMFEKARWEGGTESAMFN 452

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---I 609
           + +       P    L  R          T  R       +       +VQ+ + D   +
Sbjct: 453 RLEEIAGSEAPVTPFLGGRLSRALEPQEGTEER-------FLPTRINWVVQSGAVDFLHL 505

Query: 610 LAEGMMNATKAGYDIVLTVHDEI 632
           +   M           L+ HDE+
Sbjct: 506 MLVSMRWLMGNRVRFCLSFHDEV 528


>gi|262212249|gb|ACY35741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 16/148 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV--K 467
                  +           R  GK +   L Y GG       A  +  + +     +  K
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGK 110

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIE 495
                  + D     +   E+     ++
Sbjct: 111 IMQGLSGFADLNAAIQERAESGVLKGLD 138


>gi|262342167|gb|ACY54594.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDTSGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|296204096|ref|XP_002749184.1| PREDICTED: DNA polymerase subunit gamma-1 [Callithrix jacchus]
          Length = 1229

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 97/344 (28%), Gaps = 49/344 (14%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 830  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 887

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   KV
Sbjct: 888  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKV 938

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++        R  + +  E   
Sbjct: 939  FNYGRIYGAG----QPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLS-EEGEW 993

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK--RRDVPLVYMK 552
                +    +R++  W        +L     +A  ++      ++A +            
Sbjct: 994  LVRELHLPVDRIEGGWISLQ----DLRKVQREASRKSRWKKWEVVAERAWMGGTESEMFN 1049

Query: 553  KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
            K ++     +P    L  R        +       +R           +VQ+ + D L  
Sbjct: 1050 KLESIATSDIPCTPVLGCRISRALEPSVVQGEFMTSR--------VNWVVQSSAVDYLHL 1101

Query: 613  GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             ++                +++HDE+     + D + A++   +
Sbjct: 1102 MLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1145


>gi|317150544|ref|XP_001824106.2| DNA polymerase gamma [Aspergillus oryzae RIB40]
          Length = 1107

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 32/230 (13%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++  +    +   +++ + A  G   V AD+   E
Sbjct: 640 PQVIPMGTIT----RRAVENTWLTASNAKE--NRVGSELKAMIKAPPGYVFVGADVDSQE 693

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G D++  T  +   ++        R   
Sbjct: 694 LWI-ASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-KILGIS--------RNDA 743

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++            +E + A    R + ++    
Sbjct: 744 KVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQEVATKLYQETKGARTTRRILSDSPFWR 803

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              + F+    E      R    R   L   + +A  +   N  + +  +
Sbjct: 804 GGTESFVFNKLEEFADQER---PRTPTLGAGITEALMRRFINRGSFMTSR 850


>gi|262342201|gb|ACY54611.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262342189|gb|ACY54605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262342183|gb|ACY54602.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262342179|gb|ACY54600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262342171|gb|ACY54596.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262342153|gb|ACY54587.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212299|gb|ACY35766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212289|gb|ACY35761.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212305|gb|ACY35769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212287|gb|ACY35760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212277|gb|ACY35755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212273|gb|ACY35753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212271|gb|ACY35752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212269|gb|ACY35751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212255|gb|ACY35744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212247|gb|ACY35740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212251|gb|ACY35742.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212253|gb|ACY35743.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212257|gb|ACY35745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212267|gb|ACY35750.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212303|gb|ACY35768.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342155|gb|ACY54588.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342159|gb|ACY54590.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342169|gb|ACY54595.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212245|gb|ACY35739.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212237|gb|ACY35735.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212241|gb|ACY35737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212279|gb|ACY35756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212285|gb|ACY35759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212291|gb|ACY35762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212295|gb|ACY35764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212313|gb|ACY35773.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212317|gb|ACY35775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212319|gb|ACY35776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212321|gb|ACY35777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212323|gb|ACY35778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212329|gb|ACY35781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212345|gb|ACY35789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212375|gb|ACY35804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212407|gb|ACY35820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342157|gb|ACY54589.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342173|gb|ACY54597.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342175|gb|ACY54598.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342187|gb|ACY54604.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342191|gb|ACY54606.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212215|gb|ACY35724.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|229472309|gb|ACQ72669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|167821768|ref|ZP_02453448.1| 38L [Burkholderia pseudomallei 91]
          Length = 808

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 109/353 (30%), Gaps = 48/353 (13%)

Query: 80  LKACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           L+A    D P    W       R +  P       +  K +    + G   +  F K ET
Sbjct: 227 LRAYLPDDCPFDFNWSN-----RYHLSPLIFGGTVKYQKRTETLDDAGN--LQYFSKEET 279

Query: 139 HECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFKRL-EPLSSKEQELWYLDQTINDRG 196
           H  L D                C   DV      F ++ EP +  ++EL + D       
Sbjct: 280 HYLLVDGT-----------TMECGRWDVAYAAGAFVQVDEPATELDRELGHYDDE----- 323

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE-KLKTWLFLETGLHLEDLT 255
                     L+Q+      K   E ++    +    R  +  ++ + +   G    D  
Sbjct: 324 ---SGKWTVPLSQVARFAGGKNKGEPKTKKVKVPDLERGPKTAIRDFFYKFPGYTTPD-- 378

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                        ++ + I+   NR        +     +  +   G+  GT       +
Sbjct: 379 -EIWASSTPGLYSVSSEVIEALGNR-------DIPFLKTLANVAKLGKDLGTYYITTDEK 430

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS---DCVRSCVIASE 372
           TG+  G       +      H++++   T        DP+   +       V+S  ++  
Sbjct: 431 TGQQKGM---LTLVGDDGIIHQKINHTSTVTARFSEQDPNLQNVSGAGKSQVKSVFVSRW 487

Query: 373 --GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
               ++V +D   +E  + A + G +  +     G D++    ++   +    
Sbjct: 488 LADGQVVQSDFTSLEIFIQAILTGCKQLIDDLRAGLDMHCVRVSQKEGITYED 540


>gi|238499913|ref|XP_002381191.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
 gi|220692944|gb|EED49290.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
          Length = 1015

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 32/230 (13%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++  +    +   +++ + A  G   V AD+   E
Sbjct: 548 PQVIPMGTIT----RRAVENTWLTASNAKE--NRVGSELKAMIKAPPGYVFVGADVDSQE 601

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G D++  T  +   ++        R   
Sbjct: 602 LWI-ASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-KILGIS--------RNDA 651

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++            +E + A    R + ++    
Sbjct: 652 KVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQEVATKLYQETKGARTTRRILSDSPFWR 711

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              + F+    E      R    R   L   + +A  +   N  + +  +
Sbjct: 712 GGTESFVFNKLEEFADQER---PRTPTLGAGITEALMRRFINRGSFMTSR 758


>gi|262342197|gb|ACY54609.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 12/117 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAG-EQWKLKAFETGEDLYV 410
           P+  Q+ S    RS    S+    V +D +G+E R L   ++  +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRHDGGKFAEEVVNGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                 +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212239|gb|ACY35736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  N +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSNASRKGQEIR 108


>gi|4455007|gb|AAD21034.1| DNA polymerase gamma [Neurospora crassa]
          Length = 1305

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + +     + ++       +   +++ V A  G   V AD+   E
Sbjct: 692 PQVIPMGTIT----RRAVERTWLTASNAKK--NRVGSELKAMVRAPPGYVFVGADVDSEE 745

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T +    +         R   
Sbjct: 746 LWI-ASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAS-ILGIT--------RNDA 795

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K   ++      +L             +  + A+   + + +     
Sbjct: 796 KVFNYGRIYGAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAKTNRKSLYKRPFWR 855

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 856 GGTESFVFNMLEEFAEQERPRTP 878


>gi|164428985|ref|XP_957747.2| DNA polymerase gamma [Neurospora crassa OR74A]
 gi|166214919|sp|Q9Y767|DPOG_NEUCR RecName: Full=DNA polymerase gamma, mitochondrial; AltName:
           Full=Mitochondrial DNA polymerase catalytic subunit;
           Flags: Precursor
 gi|157072364|gb|EAA28511.2| DNA polymerase gamma [Neurospora crassa OR74A]
          Length = 1456

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + +     + ++       +   +++ V A  G   V AD+   E
Sbjct: 692 PQVIPMGTIT----RRAVERTWLTASNAKK--NRVGSELKAMVRAPPGYVFVGADVDSEE 745

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T +    +         R   
Sbjct: 746 LWI-ASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAS-ILGIT--------RNDA 795

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K   ++      +L             +  + A+   + + +     
Sbjct: 796 KVFNYGRIYGAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAKTNRKSLYKRPFWR 855

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 856 GGTESFVFNMLEEFAEQERPRTP 878


>gi|83772845|dbj|BAE62973.1| unnamed protein product [Aspergillus oryzae]
          Length = 1017

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 32/230 (13%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++  +    +   +++ + A  G   V AD+   E
Sbjct: 664 PQVIPMGTIT----RRAVENTWLTASNAKE--NRVGSELKAMIKAPPGYVFVGADVDSQE 717

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G D++  T  +   ++        R   
Sbjct: 718 LWI-ASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-KILGIS--------RNDA 767

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++            +E + A    R + ++    
Sbjct: 768 KVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQEVATKLYQETKGARTTRRILSDSPFWR 827

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              + F+    E      R    R   L   + +A  +   N  + +  +
Sbjct: 828 GGTESFVFNKLEEFADQER---PRTPTLGAGITEALMRRFINRGSFMTSR 874


>gi|321462891|gb|EFX73911.1| hypothetical protein DAPPUDRAFT_226991 [Daphnia pulex]
          Length = 1206

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 111/350 (31%), Gaps = 55/350 (15%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   S     + +     + ++       I   +++ +    G   V AD+   E  
Sbjct: 795  ILPQIVTSGTLTRRAVESTWLTASNA--YKDRIGSELKAMIQCPPGFNFVGADVDSQELW 852

Query: 388  VLAWMAGEQ--------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            + A + G+                       G D++  T A        ++T+DQ    K
Sbjct: 853  I-ASIIGDSFFAGQHGSTAFGWMTLQGKKSDGTDMHSRTAAAV------EITRDQ---AK 902

Query: 434  VMELALGYQGGAKAFQKMASTTG--LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            ++     Y  G +  + +       L     +   +   +  +         + ++    
Sbjct: 903  ILNYGRIYGAGERFARTLLMQFNHRLTEKEASEKARKMYSLTKGNSLLKLSHYGRQLASA 962

Query: 492  HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
               +D  +        +   +K   + ++ N       +         +     +  +  
Sbjct: 963  SGNKDELVTLEQLSEMRKNARKEPSLKQIANLPTDELVERRMWAGGTESHMFNKLEEIAQ 1022

Query: 552  KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD--- 608
             +     +L     R+L  R+VGN       T+R               +VQ+ + D   
Sbjct: 1023 SESPQTPVLHCRISRALEPRNVGNEFM----TSR------------VNWVVQSSAVDYLH 1066

Query: 609  ILAEGM---MNATKAGYDIV-----LTVHDEIVCETPDTDEFNASMLYHL 650
            ++   M   ++  K G  ++     +++HDE+     + D+F A++   +
Sbjct: 1067 LMIVAMRYLVDVYKLGVVLIEGRFSISIHDEVRYIIKEEDKFRAALALQV 1116


>gi|297697407|ref|XP_002825850.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Pongo abelii]
          Length = 1247

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 96/347 (27%), Gaps = 55/347 (15%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 848  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 905

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 906  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 956

Query: 435  MELALGYQGGAKAFQKMA-----STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                  Y  G    +++        T       A  +   +    W    +   W+    
Sbjct: 957  FNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVREL 1016

Query: 490  PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                        + + ++K  R+   +    W +     E+  + G       + +    
Sbjct: 1017 HLPVDRTEGGWISLQDLRKVQRETARK--SQWRKWEVIAERAWKGGTESEMFNKLESIAT 1074

Query: 550  YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                    L   +   R+L    V         T+R               +VQ+ + D 
Sbjct: 1075 SDIPRTPVLGCRIS--RALEPSAVREEFM----TSR------------VNWVVQSSAVDY 1116

Query: 610  LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            L   ++                +++HDE+     + D + A++   +
Sbjct: 1117 LHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1163


>gi|194100278|ref|YP_002003476.1| gp5 [Enterobacteria phage BA14]
 gi|193201273|gb|ACF15753.1| gp5 [Enterobacteria phage BA14]
          Length = 704

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 69/254 (27%), Gaps = 47/254 (18%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQA------IQVFNN 279
           +V +    + +   L     + +             VL   K   P A      I+ +  
Sbjct: 332 VVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLM 391

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEE 338
             +         N  +  +  DGR+ G++   GA  TGR +        +P   +   E 
Sbjct: 392 IQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGAV-TGRATHSFPNVAQVPSIRAAYGEP 450

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA---GE 395
                          PDP                    V  D +G+E R L        E
Sbjct: 451 CRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRYDE 493

Query: 396 QWKLKAFETGEDLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
              ++   TG D++      A    +         R   K       Y  GA    K+  
Sbjct: 494 GEYVETILTG-DIHTKNQMAA---GLPT-------RDNAKTFIYGFLYGAGA---AKIGQ 539

Query: 454 TTGLNLNTFAHLVK 467
             G        L+K
Sbjct: 540 IVGGTAEDGKRLIK 553


>gi|262212297|gb|ACY35765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     V+
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEVR 108


>gi|326536127|ref|YP_004300559.1| gp5 [Enterobacteria phage 285P]
 gi|256861516|gb|ACV32472.1| gp5 [Enterobacteria phage 285P]
          Length = 704

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 69/252 (27%), Gaps = 43/252 (17%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQA------IQVFNN 279
           +V +    + +   L     + +             VL   K   P A      I+ +  
Sbjct: 332 VVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLM 391

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEE 338
             +         N  +  +  DGR+ G++   GA  TGR +        +P   +   E 
Sbjct: 392 IQKRIGQVAEGDNGWLRMIGDDGRIHGSVNPNGAV-TGRATHSFPNVAQVPSIRAAYGEP 450

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA---GE 395
                          PDP                    V  D +G+E R L        E
Sbjct: 451 CRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRYDE 493

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++   TG D++      +  +         R   K       Y  GA    K+    
Sbjct: 494 GEYVETILTG-DIHTKN-QLAAGLPT-------RDNAKTFIYGFLYGAGA---AKIGQIV 541

Query: 456 GLNLNTFAHLVK 467
           G        L+K
Sbjct: 542 GGTAEDGKRLIK 553


>gi|262212275|gb|ACY35754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R LA  ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLAHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  G+ +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGRGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|311347844|gb|ADP90867.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 840  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 897

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 898  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 948

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 949  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 1003

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G           
Sbjct: 1004 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM------ 1057

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++     +P    L                   +R           +VQ+ +
Sbjct: 1058 ----FNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSR--------VNWVVQSSA 1105

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1106 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1155


>gi|114658821|ref|XP_523149.2| PREDICTED: DNA polymerase subunit gamma-1 [Pan troglodytes]
          Length = 1236

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 837  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 894

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 895  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 945

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 946  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 1000

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G           
Sbjct: 1001 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM------ 1054

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++     +P    L                   +R           +VQ+ +
Sbjct: 1055 ----FNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSR--------VNWVVQSSA 1102

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1103 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1152


>gi|21779923|gb|AAM77583.1|AF497906_1 polymerase (DNA directed), gamma [Homo sapiens]
          Length = 1240

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 841  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 898

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 899  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 949

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 950  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 1004

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G           
Sbjct: 1005 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM------ 1058

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++     +P    L                   +R           +VQ+ +
Sbjct: 1059 ----FNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSR--------VNWVVQSSA 1106

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1107 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1156


>gi|4505937|ref|NP_002684.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|187171277|ref|NP_001119603.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|1706507|sp|P54098|DPOG1_HUMAN RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|1399956|gb|AAC50712.1| DNA polymerase gamma [Homo sapiens]
 gi|1438508|emb|CAA66719.1| DNA polymerase gamma [Homo sapiens]
 gi|27502689|gb|AAH42571.1| Polymerase (DNA directed), gamma [Homo sapiens]
 gi|29791648|gb|AAH50559.1| POLG protein [Homo sapiens]
 gi|119622450|gb|EAX02045.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|119622452|gb|EAX02047.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|311347818|gb|ADP90854.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347820|gb|ADP90855.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347822|gb|ADP90856.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347824|gb|ADP90857.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347826|gb|ADP90858.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347828|gb|ADP90859.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347830|gb|ADP90860.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347832|gb|ADP90861.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347834|gb|ADP90862.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347836|gb|ADP90863.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347838|gb|ADP90864.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347840|gb|ADP90865.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347842|gb|ADP90866.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347846|gb|ADP90868.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347848|gb|ADP90869.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347850|gb|ADP90870.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347854|gb|ADP90872.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347856|gb|ADP90873.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347858|gb|ADP90874.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347860|gb|ADP90875.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347862|gb|ADP90876.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347864|gb|ADP90877.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347866|gb|ADP90878.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347868|gb|ADP90879.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347870|gb|ADP90880.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347872|gb|ADP90881.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347874|gb|ADP90882.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347876|gb|ADP90883.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347880|gb|ADP90885.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347882|gb|ADP90886.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347884|gb|ADP90887.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347886|gb|ADP90888.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347888|gb|ADP90889.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347890|gb|ADP90890.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347892|gb|ADP90891.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347894|gb|ADP90892.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347896|gb|ADP90893.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 840  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 897

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 898  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 948

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 949  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 1003

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G           
Sbjct: 1004 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM------ 1057

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++     +P    L                   +R           +VQ+ +
Sbjct: 1058 ----FNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSR--------VNWVVQSSA 1105

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1106 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1155


>gi|1644239|dbj|BAA12223.1| mitochondrial DNA polymerase gamma [Homo sapiens]
          Length = 1241

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 842  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 899

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 900  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 950

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 951  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 1005

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G           
Sbjct: 1006 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM------ 1059

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++     +P    L                   +R           +VQ+ +
Sbjct: 1060 ----FNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSR--------VNWVVQSSA 1107

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1108 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1157


>gi|262212395|gb|ACY35814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R   +A+ G+ +V ADL+GIE R+L+  +A             D++     +        
Sbjct: 7   RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQLNADKI------- 59

Query: 424 VTKDQRAIGKVMELALGYQGG 444
                R + K +  A  Y  G
Sbjct: 60  --GIIRKLVKTVTYAFLYGAG 78


>gi|158255998|dbj|BAF83970.1| unnamed protein product [Homo sapiens]
          Length = 1239

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 840  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 897

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 898  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 948

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 949  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 1003

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G           
Sbjct: 1004 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM------ 1057

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++     +P    L                   +R           +VQ+ +
Sbjct: 1058 ----FNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSR--------VNWVVQSSA 1105

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1106 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1155


>gi|212671402|ref|YP_002308401.1| DNA polymerase [Kluyvera phage Kvp1]
 gi|211997246|gb|ACJ14563.1| DNA polymerase [Kluyvera phage Kvp1]
          Length = 704

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 69/252 (27%), Gaps = 43/252 (17%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQA------IQVFNN 279
           +V +    + +   L     + +             VL   K   P A      I+ +  
Sbjct: 332 VVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLM 391

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEE 338
             +         N  +  +  DGR+ G++   GA  TGR +        +P   +   E 
Sbjct: 392 IQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGAV-TGRATHSFPNVAQVPSIRAAYGEP 450

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA---GE 395
                          PDP                    V  D +G+E R L        E
Sbjct: 451 CRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRYDE 493

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++   TG D++      +  +         R   K       Y  GA    K+    
Sbjct: 494 GEYVETILTG-DIHTKN-QLAAGLPT-------RDNAKTFIYGFLYGAGA---AKIGQIV 541

Query: 456 GLNLNTFAHLVK 467
           G        L+K
Sbjct: 542 GGTAEDGKRLIK 553


>gi|119622451|gb|EAX02046.1| polymerase (DNA directed), gamma, isoform CRA_b [Homo sapiens]
          Length = 1168

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 840  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 897

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 898  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 948

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 949  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 1003

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G           
Sbjct: 1004 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM------ 1057

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++     +P    L                   +R           +VQ+ +
Sbjct: 1058 ----FNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSR--------VNWVVQSSA 1105

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1106 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1155


>gi|195119063|ref|XP_002004051.1| GI19730 [Drosophila mojavensis]
 gi|193914626|gb|EDW13493.1| GI19730 [Drosophila mojavensis]
          Length = 1143

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 25/179 (13%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP+   +     + +     + ++       I   +RS V A  G KLV AD+   E  
Sbjct: 754 ILPQVVVAGTLTRRAMESTWMTASN--SRANRIGSELRSMVQAPPGYKLVGADVDSQELW 811

Query: 388 VLAWMA-----GEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + + +      GE             +   G D++  T          +V    R   KV
Sbjct: 812 IASVLGDAYAHGEHGATPLGWMTLSGSKSNGSDMHSITA---------KVVGISRDHAKV 862

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           +  A  Y  G +  + +       L+      K           +   R  +E H E  
Sbjct: 863 LNYARIYGAGQQFAETLLQQFNPTLSATEAKAKAMKMFAA-TKGKRVYRLREEFHDEQE 920



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 90/300 (30%), Gaps = 52/300 (17%)

Query: 42  VELWDCVHDPVMP---QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           VE  D   +         L          +V HN  ++R  ++  + ++    R++ T+ 
Sbjct: 225 VEPIDVDSNERPHYTLDELIPLGHKEPSLVVGHNVSYDRARIREQYLIEDTKTRFVDTMS 284

Query: 99  LA---------RSNGLPSALKAVGEALK-LSSQKMEEGKELIARFCKGET-----HECLY 143
           L          +   L S      E L  L+   +    ++   +C GE           
Sbjct: 285 LHICVSGVTSYQRAMLKSKKDPAVEDLDWLAQSSLNNLVDVHRLYCGGEPLSKEPRNIFV 344

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-----------------------SS 180
           +      R+ ++    YC GDV  T  I  +L PL                        +
Sbjct: 345 EGTLEQVRQQFQSLVNYCAGDVEATHRILGKLYPLYAERFPHPVTLAGMLEMGTAYLPVN 404

Query: 181 KEQELWYLDQTINDRGYCVDVAL-----AHTLNQIVDVER-----TKLDQELESLTYGLV 230
              E +  D  +      ++        A     ++  E+        D++       L 
Sbjct: 405 SNWERYIRDAQLAYEDLSIEAKYHLGRRAEEACALLHDEKYRKNLWLWDEDWSVQALKLK 464

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              +  ++L T    E GL +E L      + L + + L P    +     +  R    K
Sbjct: 465 QMPK-RKQLSTVQLPEQGLDVEQLRLQRKFQYLYNQRALLPSRRPLLPGYPQWYRKLCRK 523


>gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi]
 gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi]
          Length = 1429

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 63/203 (31%), Gaps = 29/203 (14%)

Query: 11   RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVTI 68
               +D+   G+  + E   + L     +++PV ++D  +  +  +   L++ L + ++  
Sbjct: 1244 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1301

Query: 69   VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
            +  N  F+   L      +  I     T + ++       L             + E K 
Sbjct: 1302 IIQNGKFDTKFL---LYNNFNITNIFDTYIASKL------LDKNKNMYGFKLNNIVE-KY 1351

Query: 129  LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
            L     K + +    +               Y   D +   +++K+L      E      
Sbjct: 1352 LSVYLDKQQQNSVWNN------SLLNNNQLFYAARDSSCLLKLYKKLSEQIVAENMQIVN 1405

Query: 189  DQT---------INDRGYCVDVA 202
            D           +   G  VD+ 
Sbjct: 1406 DIENKCILPICDMELNGITVDLE 1428


>gi|242777655|ref|XP_002479078.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
 gi|218722697|gb|EED22115.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
          Length = 1129

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 59/205 (28%), Gaps = 29/205 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   +++ + A  G   V AD+   E
Sbjct: 668 PQVIPM----GTITRRAVENTWLTASNA--KANRVGSELKAMIKAPPGYVFVGADVDSQE 721

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T +    ++        R   
Sbjct: 722 LWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDLHSRTAS-ILGIS--------RNDA 771

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +       L         +   +E +      + + +     
Sbjct: 772 KVFNYGRIYGAGLKFASTLLRQFNPTLTEKETSQIASKLYKETKGTRTTRKILNDGPFWR 831

Query: 493 AIEDLFIGTACERVKKAWRQKHSRV 517
              + F+    E   +  R +   +
Sbjct: 832 GGTESFVFNKLEEFAEQERPRTPAL 856


>gi|262212211|gb|ACY35722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S     V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSGNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|9634019|ref|NP_052093.1| DNA polymerase [Yersinia phage phiYeO3-12]
 gi|6599010|emb|CAB63614.1| DNA polymerase [Yersinia phage phiYeO3-12]
          Length = 704

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 71/283 (25%), Gaps = 57/283 (20%)

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260
           A    L       R  ++    +    +       + ++  L  E G   E  TE     
Sbjct: 305 AQREGLEPCDLDTRDYMEGAPYTPVEFVTFKPSSRDHIQKKL-QEAGWVPEKFTEKGAPV 363

Query: 261 ---RVLSSNKKLTPQ------AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
               VL   +   P+       I+ +    +    A       +  +  DG++ G +   
Sbjct: 364 VDDEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDGKIHGAVNPN 423

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           GA  TGR +        +P         +Q  +        D               I  
Sbjct: 424 GAV-TGRATHSFPNLAQVP--GVRSPYGEQCRSAFGAEHHLDG--------------ITG 466

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--------DLYV--TTYARSFNVAP 421
           +       D +G+E R LA        +  F+ GE        D++      A       
Sbjct: 467 KPWVQAGIDASGLELRCLAHF------MARFDNGEYANEILNGDIHTKNQNAAEL----- 515

Query: 422 AQVTKDQRAIGKVMELALGYQGG---AKAFQKMASTTGLNLNT 461
                  R   K       Y  G              G  L  
Sbjct: 516 -----PTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKK 553


>gi|281416299|ref|YP_003347539.1| DNA polymerase [Klebsiella phage KP32]
 gi|262410418|gb|ACY66683.1| DNA polymerase [Klebsiella phage KP32]
          Length = 704

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 61/264 (23%), Gaps = 73/264 (27%)

Query: 229 LVSSSRCLE----KLKT--WLFLETGLHLEDLTETTCQRVLSSNKKLTPQ------AIQV 276
           +V +    +    KLK   W+  E     +         VL   +   P+       I+ 
Sbjct: 332 VVFNPSSRDHIALKLKEAGWIPTEF---TDKGAPKVDDEVLEHVRVDDPEKQRCIDLIKE 388

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
           +    +    A       +  +  DG++ G++   GA                       
Sbjct: 389 YLMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA----------------------- 425

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCV------RSCVIASE--------GKKLVVADLA 382
                       +  S P+  Q+           R+   A                 D +
Sbjct: 426 --------VTGRATHSFPNLGQVPGVRSPYGEPCRAAFGAEHHLDGLTGLPWVQAGIDAS 477

Query: 383 GIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
           G+E R LA      +           D++          A    T   R   K       
Sbjct: 478 GLELRCLAHFMSKYDGGAYADVILNGDIHT-----VNQQAAELPT---RDNAKTFIYGFL 529

Query: 441 YQGG---AKAFQKMASTTGLNLNT 461
           Y  G              G  L  
Sbjct: 530 YGAGDEKIGQIVGAGKERGKELKK 553


>gi|262368015|pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
            Holoenzyme
 gi|262368018|pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
            Holoenzyme
          Length = 1172

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 773  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 830

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 831  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 881

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 882  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 936

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G           
Sbjct: 937  LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM------ 990

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++     +P    L                   +R           +VQ+ +
Sbjct: 991  ----FNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSR--------VNWVVQSSA 1038

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1039 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1088


>gi|242009894|ref|XP_002425717.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
 gi|212509618|gb|EEB12979.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
          Length = 1124

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 102/342 (29%), Gaps = 56/342 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +P    +     + +     + +   +    I   +R+ V A  G  +V AD+   E  
Sbjct: 729  IIPMVVVAGTVTRRAVERTWLTASKVSE--NRIGSELRALVQAPSGYHIVGADVDSQELW 786

Query: 388  VLAWMAGEQW--------------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            + A + G+                         D++  T                R   K
Sbjct: 787  IAA-LLGDSTYAKVHGCTPLGWMTLQGTKSNESDMHSRTAKAI---------GISRDHAK 836

Query: 434  VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            ++  A  Y  G K  QK+       LN    L K     + ++  +   R+         
Sbjct: 837  ILNYARIYGAGVKFAQKLLQQFNPLLNESDALKKAT---KIYQYTKGVKRFTVRPEISKF 893

Query: 494  IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK-RRDVPLVYMK 552
             ++ F       +  A+     +++++ N+         + G+        R        
Sbjct: 894  FQERFGCLEVNDMATAY-----QITKILNK---------KFGEIFSGSHWTRGTESHMFN 939

Query: 553  KDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD--- 608
            K +     + P    L  R        YLN      TR           +VQ+ + D   
Sbjct: 940  KLEKIASALEPKTPFLSCRLSTALEPHYLNDDYHLNTRINW--------VVQSGAVDFLH 991

Query: 609  ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            ++   M   T        + HDEI    P   +++ ++  HL
Sbjct: 992  LMLVCMRWLTNGHARYCFSFHDEIRYLFPSEQKYSGALAVHL 1033


>gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 209

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 31/175 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++         P  LK  L +  V  + H +
Sbjct: 27  IDTETLGLNPHRDRLCV--VQISRGDGSADVVQIRPGDPEPVRLKAILADPGVLKIFHFA 84

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARS----NGLPSAL-KAVGEALKLSSQKMEEGK 127
            F+  VL      +  P++       LAR+    +GL   + + VG  L    Q  + G 
Sbjct: 85  RFDLAVLFRALGVMPAPVYCTKVASKLARTYTDRHGLKDVVRELVGVDLSKQQQSSDWGA 144

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           E ++                       +   +Y   DV       +RL+ + ++E
Sbjct: 145 ETLS-----------------------QAQIDYAASDVLHLHAARERLDLMLARE 176


>gi|289617399|emb|CBI55887.1| unnamed protein product [Sordaria macrospora]
          Length = 1509

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 25/201 (12%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP+         + +     + ++       +   +++ V A  G   V AD+   E  
Sbjct: 690 ILPQLIPMGTITRRAVERTWLTASNAKK--NRVGSELKAMVRAPPGYVFVGADVDSEELW 747

Query: 388 VLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+         A            G DL+  T A    +         R   KV
Sbjct: 748 I-ASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAA-ILGIT--------RNDAKV 797

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G K   ++      +L     +       +  + A+   + + +       
Sbjct: 798 FNYGRIYGAGLKFASQLLRQFNPSLTEAETITIATKLYDATKGAKTNRKSLYKRPFWRGG 857

Query: 495 EDLFIGTACERVKKAWRQKHS 515
            + F+    E   +  R +  
Sbjct: 858 TESFVFNMLEEFAEQERPRTP 878


>gi|194473823|ref|YP_002048647.1| DNA polymerase [Morganella phage MmP1]
 gi|194307044|gb|ACF42026.1| DNA polymerase [Morganella phage MmP1]
          Length = 703

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 83/313 (26%), Gaps = 42/313 (13%)

Query: 231 SSSRCLE--KLK----TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +    +  +LK     W+  E     + + + T    +  +      +I +  + +   
Sbjct: 327 FNPSSRDHIQLKLQEAGWVPTEFTPTGQPVVDDTVLEHVKVDDPEKQASIDLIKDYLLIQ 386

Query: 285 RS---AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340
           +    A       +  +  DGR+ G++   GA  TGR +        +P   +   EE  
Sbjct: 387 KRIGQAAEGDKAWLRYVEEDGRMHGSVNPNGAV-TGRATHSFPNVAQVPSVRAPYGEECR 445

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
           +            PD  +             +       D +G+E R LA        + 
Sbjct: 446 KAF---GAEHNRKPDGTK-------------DPWVQAGIDASGLELRCLAHF------MA 483

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---AKAFQKMASTTGL 457
            F+ GE  +                   R   K       Y  G              G 
Sbjct: 484 RFDNGEYAHEILNGDIHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGK 543

Query: 458 NL------NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
            L      NT A      S  +    +  + R       +            +  K   R
Sbjct: 544 ELKAKFLENTPAIAALRESIEQTLVKSSKWVRNADGTSEQKVSWKRRWVKGLDGRKVHVR 603

Query: 512 QKHSRVSELWNEL 524
             H+ ++ L    
Sbjct: 604 SPHAALNTLLQSA 616


>gi|189427219|ref|YP_001949769.1| gp5 [Salmonella phage phiSG-JL2]
 gi|189085872|gb|ACD75687.1| gp5 [Salmonella phage phiSG-JL2]
          Length = 704

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 87/349 (24%), Gaps = 57/349 (16%)

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260
           A    L       R  ++    +    +       + ++  L  E G   E  TE     
Sbjct: 305 AQREGLEPCDLDTRDYMEGAPYTPVEFVTFKPSSRDHIQKKL-QEAGWVPEKFTEKGAPV 363

Query: 261 ---RVLSSNKKLTPQ------AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
               VL   +   P+       I+ +    +    A       +  +  DG++ G +   
Sbjct: 364 VDDEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDGKIHGAVNPN 423

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           GA  TGR +        +P         +Q  +        D               I  
Sbjct: 424 GAV-TGRATHSFPNLAQVP--GVRSPYGEQCRSAFGAEHHLDG--------------ITG 466

Query: 372 EGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV--TTYARSFNVAPAQVTKD 427
           +       D +G+E R LA      +  +        D++      A             
Sbjct: 467 KPWVQAGIDASGLELRCLAHFMARFDNGEYANEILNGDIHTKNQNAAEL----------P 516

Query: 428 QRAIGKVMELALGYQGG---AKAFQKMASTTGLNLNTF------------AHLVKTNSAP 472
            R   K       Y  G              G  L                 + ++    
Sbjct: 517 TRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVKS 576

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
             W  AE   +W +          + + +    +    +   + + +LW
Sbjct: 577 SAWIGAEQKVQWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGALICKLW 625


>gi|229472565|gb|ACQ72797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 12/106 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                 +           R  GK +   L Y GG       A  + 
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGASK 97


>gi|311347852|gb|ADP90871.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 98/350 (28%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 840  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 897

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 898  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 948

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 949  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 1003

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G       + + 
Sbjct: 1004 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLES 1063

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                       L   +   R+L    V     ++ +                  +VQ+ +
Sbjct: 1064 IATSDIPRTPVLGCCIS--RALEPSAVQEE--FMTSH--------------VNWVVQSSA 1105

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1106 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1155


>gi|262212283|gb|ACY35758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKPGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|194761126|ref|XP_001962783.1| GF15619 [Drosophila ananassae]
 gi|190616480|gb|EDV32004.1| GF15619 [Drosophila ananassae]
          Length = 1134

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 101/347 (29%), Gaps = 64/347 (18%)

Query: 330  PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            P+         + +     + + S PD    +   +RS V A  G KLV AD+   E  +
Sbjct: 755  PQVVACGTLTRRAMEPTWMTASNSRPD---RLGSELRSMVQAPPGYKLVGADVDSQELWI 811

Query: 389  L-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                  A+  GE             +   G D++  T                R   KV+
Sbjct: 812  ASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVI 862

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              A  Y  G                 FA  +     P  +  +E   + M+         
Sbjct: 863  NYARIYGAG---------------QQFAETLLRQFNP-TFSASEAKAKAMKMFSITKGKR 906

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
            +  +              H  + +     ++A    I+  + I          ++    +
Sbjct: 907  EYRLREEF----------HDELDDRAYSSYEASRLAIQRNRTI---GEVFHRPIWQGGTE 953

Query: 556  NNLILMLPSGRSLVYRD---VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---I 609
            + +   L    +        +G   S         T+E  +       +VQ+ + D   +
Sbjct: 954  SAMFNRLEDIATQSQPQTPFLGGRLSRALEADSDPTQEQRFLPTRINWVVQSGAVDFLHL 1013

Query: 610  LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS---MLYHLMTS 653
            +   M           L+ HDE+     +   + A+    + +LMT 
Sbjct: 1014 MLVSMRWLMGPHVRFCLSFHDELRYLVKEEVAYKAALAMHITNLMTR 1060



 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 22/161 (13%)

Query: 37  FDDHPVELWDCVHDPVMP----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            +  P    D   D   P      L          +V HN  ++R  LK  + ++   +R
Sbjct: 220 INMEP---LDIDTDSERPHYRSDELIPLGTEGPGLVVGHNVSYDRARLKEQYLIEDTGYR 276

Query: 93  WICTLVLAR---------SNGLPSALKAVGEALK-LSSQKMEEGKELIARFCKGET---- 138
           ++ T+ L              L S  +   E L  L    +    E+   +C GE     
Sbjct: 277 FLDTMSLHMCVSGVTSYQRAMLKSKKEPAPEDLGWLDKSSLNSLVEVHRLYCGGEPLSKE 336

Query: 139 -HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                 +      R+ ++    YC  DV  T  + + L PL
Sbjct: 337 PRNIFVEGTLEQVRQHFQSLVNYCASDVEATHRVLQALYPL 377


>gi|29838472|gb|AAO93094.1| DNA polymerase [Bacillus phage Bastille]
          Length = 279

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 20/138 (14%)

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
              +   + +  +  +    A       +  +R         +  ++    L G+    G
Sbjct: 159 KADKHAFEYISENYPEHKELADLFLEFSLVKTRKQSFTYK-FLTMVDHHDILHGSFNSEG 217

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + T R S      QNLPR +                     D    I    R+ V   E
Sbjct: 218 -TETSRLSSAAPNLQNLPRKT---------------GDVFRFDYQHPIK---RAFVTRFE 258

Query: 373 GKKLVVADLAGIEARVLA 390
           G  L+  D + +E+RV+A
Sbjct: 259 GGALIQLDYSSLESRVMA 276


>gi|229472563|gb|ACQ72796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 12/106 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                 +           R  GK +   L Y GG       A  + 
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGASK 97


>gi|50286981|ref|XP_445920.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525226|emb|CAG58839.1| unnamed protein product [Candida glabrata]
          Length = 1284

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 89/312 (28%), Gaps = 89/312 (28%)

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ-----------WKL--KAFET 404
             I   +++ + A EG   V AD+   E  + A + G+            W         
Sbjct: 697 NRIGSELKAQICAPEGYSFVGADVDSEELWI-ASLFGDSVLRIHGGTPIGWMCLEGTKAE 755

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G DL+  T          Q+    R   K+      Y  G K   ++       L+    
Sbjct: 756 GSDLHTKTA---------QILSCDRNEAKIFNYGRIYGAGVKFASQLLKKFNPTLSE--- 803

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                             +  +E   +            +  KK W      +  L+N+L
Sbjct: 804 ------------------KEAKETAVKLYESTKGKTKRSKVFKKFWYGGSESI--LFNKL 843

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
               EQ                         N +  +L  G               N+  
Sbjct: 844 ESIAEQ------------------------DNPMTPVLGCG-------------ITNSLM 866

Query: 585 RQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPD 638
           +Q  +  ++        +Q+   D   +L   M   ++       +++++HDEI     D
Sbjct: 867 KQNLKANSFLPSRVNWAIQSSGVDYLHLLCCSMNYLISMYNIEARLIISIHDEIRYLVAD 926

Query: 639 TDEFNASMLYHL 650
            D++  ++   +
Sbjct: 927 KDKYKLALALQI 938


>gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 217

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 34/179 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQVLKEALENTDVT 67
           +D    G+  + +   + L      D    L   +           P  LK  L +  +T
Sbjct: 29  VDTETMGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NLKRVLADPSIT 85

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE-ALKLSSQKM 123
            + H + F+  +L+    + +     +CT + AR          L A+    L +   K 
Sbjct: 86  KIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCRDMLGVELSKQ 143

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           ++  +  A+  K E                      Y   DV     ++ ++  L  +E
Sbjct: 144 QQTSDWGAKELKPEQ-------------------LAYAASDVLYLHALWDKMSALLDRE 183


>gi|229472353|gb|ACQ72691.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 12/106 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                 +           R  GK +   L Y GG       A  + 
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGASK 97


>gi|229472543|gb|ACQ72786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 12/106 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                 +           R  GK +   L Y GG       A  + 
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGASK 97


>gi|119637765|ref|YP_919001.1| DNA polymerase [Yersinia phage Berlin]
 gi|119391796|emb|CAJ70669.1| hypothetical protein [Yersinia phage Berlin]
          Length = 704

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 65/255 (25%), Gaps = 70/255 (27%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQA------IQVFNN 279
           +V +    + +   L     + +             VL   K   P A      I+ +  
Sbjct: 332 VVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLM 391

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +         N  +  +  DGR+ G++   G                           
Sbjct: 392 IQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNG--------------------------- 424

Query: 340 DQIITHLPTSITSDPDPLQIISDCV------RSCVIA--------SEGKKLVVADLAGIE 385
                    +  S P+  Q+ S         R+   A         +    V  D +G+E
Sbjct: 425 ----AVTGRATHSFPNVAQVPSIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLE 480

Query: 386 ARVLAWMA---GEQWKLKAFETGEDLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            R L        E   ++   TG D++      A    +         R   K       
Sbjct: 481 LRCLGHFMYRYDEGEYVETILTG-DIHTKNQMAA---GLPT-------RDNAKTFIYGFL 529

Query: 441 YQGGAKAFQKMASTT 455
           Y  GA    ++   T
Sbjct: 530 YGAGAAKIGQIVGGT 544


>gi|212533271|ref|XP_002146792.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
 gi|210072156|gb|EEA26245.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
          Length = 1122

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 59/205 (28%), Gaps = 29/205 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   +++ + A  G   V AD+   E
Sbjct: 663 PQIIPM----GTITRRAVENTWLTASNA--KGNRVGSELKAMIKAPPGYVFVGADVDSQE 716

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T +    ++        R   
Sbjct: 717 LWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDLHSRTAS-ILGIS--------RNDA 766

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +       L         +   +E +      + + +     
Sbjct: 767 KVFNYGRIYGAGLKFASTLLRQFNPTLTEKETSQIASKLYKETKGTRTTRKILNDGPFWR 826

Query: 493 AIEDLFIGTACERVKKAWRQKHSRV 517
              + F+    E   +  R +   +
Sbjct: 827 GGTESFVFNKLEEFAEQERPRTPAL 851


>gi|311347878|gb|ADP90884.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 61/350 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 840  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYTLVGADVDSQELW 897

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T                R   K+
Sbjct: 898  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKI 948

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++   A    RW + +  E   
Sbjct: 949  FNYGRIYGAG----QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGEW 1003

Query: 495  EDLFIGTACERVKKAW------RQKHSRVSE--LWNELHQAFEQTIENGKAIIARKRRDV 546
                +    +R +  W      R+     +    W +     E+  + G           
Sbjct: 1004 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM------ 1057

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                  K ++     +P    L                   +R           +VQ+ +
Sbjct: 1058 ----FNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSR--------VNWVVQSSA 1105

Query: 607  RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             D L   ++                +++HDE+     + D + A++   +
Sbjct: 1106 VDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDCYRAALALQI 1155


>gi|262212293|gb|ACY35763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                        ++ +  R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA---------EIYRTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212265|gb|ACY35749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+  +   RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPTAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212325|gb|ACY35779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DVH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|241895006|ref|ZP_04782302.1| hypothetical protein HMPREF0877_0276 [Weissella paramesenteroides
           ATCC 33313]
 gi|241871724|gb|EER75475.1| hypothetical protein HMPREF0877_0276 [Weissella paramesenteroides
           ATCC 33313]
          Length = 325

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 31/200 (15%)

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           ++ +    +     + + ++    +  T +F       RWS  +   Q      R  +E 
Sbjct: 19  QLNSKGFTISYYQIIQDYLSDKLIIDDTFEFR------RWSTGLLNMQ-----GRVIDET 67

Query: 340 DQIITHLPT----------SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
             ++  +              TS P+   I   C R+ ++A  G++ V  D+   E R L
Sbjct: 68  AGVVHVVGRHEAYANIPMQISTSAPNTQAIPKWC-RNYLVAPTGRRFVALDIGSAEPRAL 126

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKA 447
           A +A ++    A   G  LY +        +  + T     R I K + +   Y      
Sbjct: 127 AGVADDEKLRMAISEG--LYESV-----GNSLLEHTGIIIPRKIVKRLFMGFLYGQSLTG 179

Query: 448 FQKMASTTGLNLNTFAHLVK 467
                +   L+     H+  
Sbjct: 180 VAATLAEISLDTGYAHHIFY 199


>gi|229472323|gb|ACQ72676.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    R     S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRPLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|281413897|ref|ZP_06245639.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 134

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE 635
           ++  +  R+      L   I Q  + DI+   M++             ++L VHDE++ E
Sbjct: 34  SSDNRQLRDMAERAALNAPI-QGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILE 92

Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665
            P  + E   ++L   M         +PL  
Sbjct: 93  VPAAELEQATALLEERMGRAAE--LSVPLDV 121


>gi|67515517|ref|XP_657644.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|40746203|gb|EAA65359.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|259489774|tpe|CBF90322.1| TPA: DNA polymerase gamma (AFU_orthologue; AFUA_5G12640)
           [Aspergillus nidulans FGSC A4]
          Length = 1134

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++       +   +++ + A  G   V AD+   E
Sbjct: 666 PQIIPMGTIT----RRAVENTWLTASNA--KANRVGSELKAMIKAPPGYAFVGADVDSQE 719

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G D++  T  +   ++        R   
Sbjct: 720 LWI-ASLIGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-KILGIS--------RNDA 769

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++        +   +E + A+   R + +N    
Sbjct: 770 KVFNYGRIYGAGVKFAATLLRQFNPSMSERETQEVASKLYKETKGAKTTRRLLSDNPFWR 829

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E      R +  
Sbjct: 830 GGTESFVFNKLEEFADQERPRTP 852


>gi|262212195|gb|ACY35714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE RVL+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELSLPSPNQFMVGADLAGIELRVLSHFPARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L + A   K   
Sbjct: 61  VNADKI---------GISRELVKTVTYAFLYGAGD---EKIGHSYDKLLPSKAAEKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             + + +A +    + E   + A E  FI     R
Sbjct: 109 IRQAYIEAIDGRDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472599|gb|ACQ72814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +           R  GK +   L Y GG       A 
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAG 94


>gi|320583448|gb|EFW97661.1| DNA polymerase gamma [Pichia angusta DL-1]
          Length = 1141

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 109/345 (31%), Gaps = 46/345 (13%)

Query: 135 KGETHECLYDRNK-PNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
           K       Y R K P + E ++ LF +        +R +   L  LS + + +++LD   
Sbjct: 454 KLTKKGTPYRRQKMPGYPEWYKKLFSKDNMTLTPKSR-VTPLLLKLSWEGKPVYWLDSK- 511

Query: 193 NDRG--YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
              G  + VD             +     +    +  GL S+    E L+T  F +    
Sbjct: 512 ---GWCFLVDKGEEEK----YKKKNYTYLEPARIVEEGLASNPDFPELLQTKSFFKVPHE 564

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
               + TT    L S   L      + ++    ++ A+         ++S  R+      
Sbjct: 565 EGPESRTT---TLMSKPFLRYFEQGILSSEYDLAKDALNLAVRNSYWISSRERIMNQFVV 621

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
                     G + P Q +P          + + +   + ++       +   +++ + +
Sbjct: 622 YKKDAIDSKIGMIIP-QIIPM----GTITRRAVENTWLTASNAKKS--RLGSELKAMIQS 674

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQ-----------WK-LKAFE-TGEDLYVTTYARSF 417
             G   V AD+   E  V A + G+            W  L+  +  G DL+  T  +  
Sbjct: 675 PPGYCFVGADVDSEELWV-ASLVGDSVFKIHGGTAIGWMTLEGTKSEGTDLHSKTA-KIL 732

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            ++        R   KV      Y  G K    +       L   
Sbjct: 733 GIS--------RNDAKVFNYGRIYGAGVKFATSLLKKFNPALTEA 769


>gi|262212341|gb|ACY35787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                        ++    R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA---------EIYATDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212331|gb|ACY35782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                        ++    R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA---------EIYATDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212311|gb|ACY35772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRRLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|19527699|gb|AAL89964.1| AT02241p [Drosophila melanogaster]
          Length = 1145

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 103/346 (29%), Gaps = 62/346 (17%)

Query: 330  PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            P+         + +     + + S PD    +   +RS V A  G +LV AD+   E  +
Sbjct: 760  PQVVACGTLTRRAMEPTWMTASNSRPD---RLGSELRSMVQAPPGYRLVGADVDSQELWI 816

Query: 389  L-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                  A+  GE             +   G D++  T                R   KV+
Sbjct: 817  ASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVI 867

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              A  Y  G                 FA  +     P  +  +E   + M+         
Sbjct: 868  NYARIYGAG---------------QLFAETLLRQFNP-TFSASEAKAKAMKMFSITKG-- 909

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI--IARKRRDVPLVYMKK 553
                    +RV +   + H  + +     ++A    I+  + +  +  + +         
Sbjct: 910  --------KRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAEVFHRPKWQGGTESAM 961

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---IL 610
                  +   S     +     +R+    T  +  +   +       +VQ+ + D   ++
Sbjct: 962  FNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQR--FLPTRINWVVQSGAVDFLHLM 1019

Query: 611  AEGMMNATKAGYDIVLTVHDE---IVCETPDTDEFNASMLYHLMTS 653
               M     +     L+ HDE   +V E        A  + +LMT 
Sbjct: 1020 LVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065



 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR---------SNGLPSALKAVGEALK 117
            +V HN  ++R  LK  +  +    R++ T+ L              L S  +   E L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 -LSSQKMEEGKELIARFCKGET-----HECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            L    +    E+   +C G+T          +      R++++    YC  DV  T  I
Sbjct: 314 WLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 172 FKRLEPL 178
            + L PL
Sbjct: 374 LRVLYPL 380


>gi|229472283|gb|ACQ72656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472335|gb|ACQ72682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +           R  GK +   L Y GG       A 
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAG 94


>gi|1401344|gb|AAC47290.1| DNA polymerase gamma [Drosophila melanogaster]
          Length = 1145

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 103/346 (29%), Gaps = 62/346 (17%)

Query: 330  PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            P+         + +     + + S PD    +   +RS V A  G +LV AD+   E  +
Sbjct: 760  PQVVACGTLTRRAMEPTWMTASNSRPD---RLGSELRSMVQAPPGYRLVGADVDSQELWI 816

Query: 389  L-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                  A+  GE             +   G D++  T                R   KV+
Sbjct: 817  ASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVI 867

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              A  Y  G                 FA  +     P  +  +E   + M+         
Sbjct: 868  NYARIYGAG---------------QLFAETLLRQFNP-TFSASEAKAKAMKMFSITKG-- 909

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI--IARKRRDVPLVYMKK 553
                    +RV +   + H  + +     ++A    I+  + +  +  + +         
Sbjct: 910  --------KRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAEVFHRPKWQGGTESAM 961

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---IL 610
                  +   S     +     +R+    T  +  +   +       +VQ+ + D   ++
Sbjct: 962  FNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQR--FLPTRINWVVQSGAVDFLHLM 1019

Query: 611  AEGMMNATKAGYDIVLTVHDE---IVCETPDTDEFNASMLYHLMTS 653
               M     +     L+ HDE   +V E        A  + +LMT 
Sbjct: 1020 LVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR---------SNGLPSALKAVGEALK 117
            +V HN  ++R  LK  +  +    R++ T+ L              L S  +   E L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 -LSSQKMEEGKELIARFCKGET-----HECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            L    +    EL   +C G+T          +      R++++    YC  DV  T  I
Sbjct: 314 WLEQSSLNSLVELHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 172 FKRLEPL 178
            + L PL
Sbjct: 374 LRVLYPL 380


>gi|303314467|ref|XP_003067242.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106910|gb|EER25097.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 1142

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 62/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   +++ V A  G   V AD+   E
Sbjct: 672 PQIIPM----GTITRRAVENTWLTASNA--KANRVGSELKAMVKAPPGYVFVGADVDSEE 725

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 726 LWI-ASLVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNA 775

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++     V   +  +E +      + + ++    
Sbjct: 776 KVFNYGRIYGAGLKFAATLLRQFNPSISDDQTKVIAANLYKETKGTRTIRKTISDSPFWR 835

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 836 GGTESFVFNKLEEFAEQERPRTP 858


>gi|240275320|gb|EER38834.1| DNA polymerase gamma [Ajellomyces capsulatus H143]
          Length = 1084

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 56/209 (26%), Gaps = 26/209 (12%)

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
             +  +     LP+         + + +   + ++       +   +++ V A  G   V
Sbjct: 611 SSNSTLKQGYILPQIIPMGTITRRAVENTWLTASNA--KANRVGSELKAMVRAPPGYVFV 668

Query: 378 VADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQV 424
            AD+   E  + A + G+         A            G DL+  T +    ++    
Sbjct: 669 GADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTAS-ILGIS---- 722

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL-VKTNSAPEEWEDAENFCR 483
               R   KV      Y  G K    +      +++      V      E   +A N   
Sbjct: 723 ----RNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEQETKRVAAKLYKETKGEAPNHSY 778

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            +                     +   R+
Sbjct: 779 SISLRSSRKQERPRTPVLGAGITEALMRR 807


>gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z]
 gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z]
          Length = 383

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 107/363 (29%), Gaps = 48/363 (13%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           +D   V L D              L + +V  V H  Y +  V    F         + T
Sbjct: 55  YDGERVSLIDPTTITDF-SPFTALLADINVIKVLHACYEDLEVFSHYFQQ--LPEPIMDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            V+A     P +           + ++++G        +  + + L    +    + W L
Sbjct: 112 QVMAGFLAFPHSTGLASLIRHYLALEIDKGASRTDWLARPLSEKQL----QYAAADVWYL 167

Query: 157 FGEYCKGDVT---------VTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHT 206
              Y K  V          V  +    LE     KE E  YL+     R   V++     
Sbjct: 168 LPLYEKMAVELAKTRWQSAVEFDCGLLLEKQRCVKEAESAYLNVPNAWRLSPVELMRLKL 227

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L +    E  K       L    V  +  L     W   +               +    
Sbjct: 228 LAKWRQEEAVK-----RDLALNFVVHNESL-----WTVAKH-------APKNTSELADLG 270

Query: 267 KKLTPQAIQ---VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  I    +     +A+R        ++  ++ D R + TL+ L   +    S   
Sbjct: 271 LHPHEIRIHGKTMLKLVAQATREPEQTYPAVIRRLSEDPRYKSTLKTL-RQKLKAISPPD 329

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLA 382
             P+ +    R  E+L + +        ++P+ L  +    R+      G +LV V D  
Sbjct: 330 LAPEIIA-GKRDLEKLMKWV----WLQDNNPNKLPDLLRNWRAEF----GTELVKVLDQQ 380

Query: 383 GIE 385
             E
Sbjct: 381 QNE 383


>gi|47934816|gb|AAT39846.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 126

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 28/128 (21%)

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P+A  ++   M   R+A  ++++ +     DGR+ G +   GA  TGR +        
Sbjct: 24  DIPEAKTIYEYLMLQKRAA--QIDSWL-THEKDGRVHGRVITNGAV-TGRMTHHSPNLAQ 79

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P                     S P          RS     EG KL+  D +G+E R+
Sbjct: 80  VP-------------------SVSAPY-----GKECRSFWCVPEGHKLIGCDASGLELRM 115

Query: 389 LAWMAGEQ 396
           LA    ++
Sbjct: 116 LAHYMRDE 123


>gi|320037536|gb|EFW19473.1| DNA polymerase gamma [Coccidioides posadasii str. Silveira]
          Length = 1142

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 62/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   +++ V A  G   V AD+   E
Sbjct: 672 PQIIPM----GTITRRAVENTWLTASNA--KANRVGSELKAMVKAPPGYVFVGADVDSEE 725

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 726 LWI-ASLVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNA 775

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++     V   +  +E +      + + ++    
Sbjct: 776 KVFNYGRIYGAGLKFAATLLRQFNPSISDDQTKVIAANLYKETKGTRTIRKTISDSPFWR 835

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 836 GGTESFVFNKLEEFAEQERPRTP 858


>gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis]
          Length = 471

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 63/234 (26%), Gaps = 85/234 (36%)

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           +R   KV+  ++ Y   A     ++    ++L      V                     
Sbjct: 289 ERRKAKVLNFSIAYGKTA---HGLSKDWKVSLEEAKDTVD-------------------- 325

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                                 W      + + W +  +   Q       I+ R+R+   
Sbjct: 326 ---------------------RWYADRPEIRK-WQDEQRRQAQQRGYVTTILGRRRQLPD 363

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                         L   R+     +   R+ +NT                   +Q  + 
Sbjct: 364 A------------ALSRNRAAQSHAL---RAAINTP------------------IQGSAA 390

Query: 608 DILAEGMMN------ATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654
           DI    M+           G+ ++L VHDE++ E P +T E     +   M S 
Sbjct: 391 DIATAAMLRINEDEALQSMGWRLLLQVHDEVILEGPRETAELARERVVACMRSP 444


>gi|119174697|ref|XP_001239691.1| hypothetical protein CIMG_09312 [Coccidioides immitis RS]
          Length = 1142

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 62/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   +++ V A  G   V AD+   E
Sbjct: 672 PQIIPM----GTITRRAVENTWLTASNA--KANRVGSELKAMVKAPPGYVFVGADVDSEE 725

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 726 LWI-ASLVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNNA 775

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +++     V   +  +E +      + + ++    
Sbjct: 776 KVFNYGRIYGAGLKFAATLLRQFNPSISDDQTKVIAANLYKETKGTRTIRKTISDSPFWR 835

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 836 GGTESFVFNKLEEFAEQERPRTP 858


>gi|9634020|ref|NP_052094.1| 5B protein [Yersinia phage phiYeO3-12]
 gi|6599011|emb|CAB63615.1| 5B protein [Yersinia phage phiYeO3-12]
          Length = 384

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 64/254 (25%), Gaps = 57/254 (22%)

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQ------AIQVFNNR 280
                 + ++  L  E G   E  TE         VL   +   P+       I+ +   
Sbjct: 14  FKPSSRDHIQKKL-QEAGWVPEKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMI 72

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +    A       +  +  DG++ G +   GA  TGR +        +P         +
Sbjct: 73  QKRIGQAAEGDKAWLRYVQDDGKIHGAVNPNGAV-TGRATHSFPNLAQVP--GVRSPYGE 129

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
           Q  +        D               I  +       D +G+E R LA        + 
Sbjct: 130 QCRSAFGAEHHLDG--------------ITGKPWVQAGIDASGLELRCLAHF------MA 169

Query: 401 AFETGE--------DLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG---AKA 447
            F+ GE        D++      A              R   K       Y  G      
Sbjct: 170 RFDNGEYANEILNGDIHTKNQNAAEL----------PTRDNAKTFIYGFLYGAGDEKIGQ 219

Query: 448 FQKMASTTGLNLNT 461
                   G  L  
Sbjct: 220 IVGAGKERGKELKK 233


>gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
 gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
          Length = 204

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 26/181 (14%)

Query: 7   DFETRSP---IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           D    +    ID    G+  + + +CV        D   ++            LK+ L +
Sbjct: 12  DLSRYTDSVAIDTETMGLNPHRDRLCV--VQLSNGDGSADVVQIPLGHTEAPNLKKLLGD 69

Query: 64  TDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQ 121
             VT + H + F+ + L      +  PI+       L R+      L   V E L +   
Sbjct: 70  PAVTKIFHFARFDLSALSNALGVMPQPIYCTKIASRLCRTYTDRHGLKDLVREVLGIDLS 129

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K ++  +           + L D               Y   DV     +  RL+ + ++
Sbjct: 130 KQQQSSD--------WGAQNLTDAQLA-----------YAASDVLHLHALRARLDAMLAR 170

Query: 182 E 182
           E
Sbjct: 171 E 171


>gi|195472713|ref|XP_002088644.1| GE11427 [Drosophila yakuba]
 gi|194174745|gb|EDW88356.1| GE11427 [Drosophila yakuba]
          Length = 1145

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 101/348 (29%), Gaps = 66/348 (18%)

Query: 330  PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            P+         + +     + + S PD    +   +RS V A  G +LV AD+   E  +
Sbjct: 760  PQVVACGTLTRRAMEPTWMTASNSRPD---RLGSELRSMVQAPPGYRLVGADVDSQELWI 816

Query: 389  L-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                  A+  GE             +   G D++  T                R   KV+
Sbjct: 817  ASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVI 867

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              A  Y  G                 FA  +     P  +  +E   + M+         
Sbjct: 868  NYARIYGAG---------------QLFAETLLRQFNP-TFSASEAKAKAMKMFSITKG-- 909

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI--IARKRRDVPLVYMKK 553
                    +RV +   + H  + +     ++A    I+  + +  +  +           
Sbjct: 910  --------KRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAEVFHRPNWQGGTESAM 961

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRD--- 608
                  +   S     +     +R+        ++     T        +VQ+ + D   
Sbjct: 962  FNRLEEIATGSEPRTPFLGGRLSRALEADGGPEQEQRFLPTR----INWVVQSGAVDFLH 1017

Query: 609  ILAEGMMNATKAGYDIVLTVHDE---IVCETPDTDEFNASMLYHLMTS 653
            ++   M     +     L+ HDE   +V E        A  + +LMT 
Sbjct: 1018 LMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065



 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR---------SNG 104
           P  L     +    +V HN  ++R  LK  + ++    R++ T+ L              
Sbjct: 241 PDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAM 300

Query: 105 LPSALKAVGEALK-LSSQKMEEGKELIARFCKG-----ETHECLYDRNKPNHREAWRLFG 158
           L S  +   E L  L    +    E+   +C G     E      +      R++++   
Sbjct: 301 LKSKKEPAAEDLGWLEQSSLNSLVEVHRLYCGGDALSKEPRNIFVEGTLEQVRQSFQSLT 360

Query: 159 EYCKGDVTVTREIFKRLEPL 178
            YC  DV  T  I + L PL
Sbjct: 361 NYCASDVEATHRILRVLYPL 380


>gi|116283963|gb|AAH61472.1| Polg protein [Mus musculus]
          Length = 1013

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 58/209 (27%), Gaps = 33/209 (15%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 818  ILPQVVTAGTITRRAVEPTWLTASNA--RPDRVGSELKAMVQAPPGYVLVGADVDSQELW 875

Query: 388  VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG        W         G DL+  T A              R   K+
Sbjct: 876  IAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATV---------GISREHAKI 926

Query: 435  MELALGYQGGAKAFQKMASTTG--LNLNTFAH-----LVKTNSAPEEWEDAENFCRWMQE 487
                  Y  G    +++       L     A         T         A+      Q 
Sbjct: 927  FNYGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQL 986

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSR 516
            N P    ED     + + ++   R+   +
Sbjct: 987  NLPVDRTEDG--WVSLQDLRMIRREASRK 1013


>gi|195397702|ref|XP_002057467.1| GJ18089 [Drosophila virilis]
 gi|194141121|gb|EDW57540.1| GJ18089 [Drosophila virilis]
          Length = 1150

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 63/211 (29%), Gaps = 39/211 (18%)

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           E + S+ R+       GA               +P+   +     + +     + ++   
Sbjct: 741 EELPSELRIHAKRMAYGA--------------IVPQIVVAGTLTRRAMESTWMTASN--S 784

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA-----GEQW--------KLKAF 402
               I   +RS V A  G KLV AD+   E  + + +      GE             + 
Sbjct: 785 RANRIGSELRSMVQAPPGYKLVGADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSK 844

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T          +V    R   KV+  A  Y  G +  + +       L+  
Sbjct: 845 SNGSDMHSITA---------KVVGISRDHAKVLNYARIYGAGQQFAETLLQQFNPTLSAT 895

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
               K           +   R  +E H E  
Sbjct: 896 EAKAKAMKMFAA-TKGKRVYRLREEFHDEQE 925



 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 90/303 (29%), Gaps = 52/303 (17%)

Query: 42  VELWDCVHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           VE  D   +      L E +         +V HN  ++R  L+  + ++    R++ T+ 
Sbjct: 226 VEPIDVDQNERPHYTLDELIPLGCGEPGLVVGHNVSYDRARLREQYLIEDTGTRFVDTMS 285

Query: 99  LAR---------SNGLPSALKAVGEALK-LSSQKMEEGKELIARFCKGET-----HECLY 143
           L              L S  +   E L  L    +    ++   +C GE           
Sbjct: 286 LHMCVSGITSYQRAMLKSKKEPAEEDLSWLEQSALNNLVDVHRLYCGGEPLSKEPRNIFV 345

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-----------------------SS 180
           +      R+ ++    YC GDV  T  I  +L P+                        +
Sbjct: 346 EGTLEQVRQQFQSLVNYCAGDVEATHRILTKLYPMFAARFPHPVTLAGMLEMGSAYLPVN 405

Query: 181 KEQELWYLDQTI--NDRGYCVDVALAHTLNQI-----VDVERTKL---DQELESLTYGLV 230
              E +  D  +   D        L     +       +  R  L   D++    +  L 
Sbjct: 406 SNWERYIRDAQLTYEDLSIEAKYHLGRRAEEACALLHDEQYRQHLWLWDEDWSVQSLKLK 465

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              +  ++L T   LE  L+ E        + L   + L P    +     +  R    K
Sbjct: 466 QLPK-RKQLPTVHLLEQELNPEQRRLQRKFQHLYDQRALLPARRPLLPGYPQWYRKLCRK 524

Query: 291 LNT 293
             T
Sbjct: 525 PPT 527


>gi|229472217|gb|ACQ72623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +           R  GK +   L Y GG       A 
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAG 94


>gi|262212055|gb|ACY35644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ SD   R   + S  + +V ADLAGIE R+L+      +  +        D++ 
Sbjct: 1   PNLAQVPSDSRFRELSLPSPNQVMVGADLAGIELRMLSHFPARYDNGRYADILLNGDIHQ 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +             R + K +  A  Y  G    +K+  +    L++ A   K   
Sbjct: 61  VNADKI---------GISRELVKTVTYAFLYGAGD---EKIGHSYDKLLSSKAAEKKGKE 108

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
             +   +A +    + E   + A E  FI     R
Sbjct: 109 IRQAHIEAIDGLDKLLEAIKK-ASERGFIKALDGR 142


>gi|229472581|gb|ACQ72805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 12/106 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRPQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                 +           R  GK +   L Y GG       A  + 
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGASK 97


>gi|149408172|ref|YP_001294606.1| hypothetical protein ORF013 [Pseudomonas phage PA11]
          Length = 624

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 109/373 (29%), Gaps = 61/373 (16%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +    E++K+WL+   G   E       +      K    Q  +     + AS   + 
Sbjct: 255 EPNPGSHEQIKSWLYS-LGWVPETFAYKRNKETGEVKKIEQVQQDKTLGPGLCASVKKLY 313

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                +E ++    L           T R S       N+        ++ Q +T+    
Sbjct: 314 GKEPKLEILDGLSIL-----------THRISVLNGFLNNVDDEGYVQAKV-QGLTNTLRF 361

Query: 350 ----ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA---GEQWKLKAF 402
               + + P   +     +R C++A +G +LV +D++ +E R           ++  +  
Sbjct: 362 KHEVVVNLPGVDKPYGADIRGCLVAPKGYELVGSDMSSLEDRCKQHYMWPYDPEYVKEMI 421

Query: 403 ETGEDLYVTTY---------------ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +   D ++                  A         + K  R + K +  A  Y  G   
Sbjct: 422 KPDFDPHLDLAVFAGALSSHEVELYKAGFLKKEEEGLVKAIRKVYKSVNYACVYGAG--- 478

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAP------------------EEWEDAENFCRWMQENH 489
             ++A T G+ ++    LV                         +W        W    H
Sbjct: 479 GPRVAITAGVTMDEGYKLVDAYWQRNWSVKRIAEDQIVKVCNGMKWLFNPVSGFWYSLRH 538

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            +     L  GT         R       +L  + H      I  G      + +   L+
Sbjct: 539 EKDRFSTLNQGTGVYCFDTWVRHIREERPQLTAQFHDEVVLCIRKGF-----REQCTALL 593

Query: 550 YMKKDKNNLILML 562
           +   DK N  L L
Sbjct: 594 HRAMDKTNKFLNL 606


>gi|262342161|gb|ACY54591.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 14/118 (11%)

Query: 354 PDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+  +   RS    S     V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPFAHEYRSLFKPSGNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK     L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGATYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|2289912|gb|AAC47658.1| mitochondrial DNA polymerase catalytic subunit precursor [Drosophila
            melanogaster]
          Length = 1145

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 102/346 (29%), Gaps = 62/346 (17%)

Query: 330  PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            P+         + +     + + S PD    +   +RS V A  G +LV AD+   E  +
Sbjct: 760  PQVVACGTLTRRAMEPTWMTASNSRPD---RLGSELRSMVQAPPGYRLVGADVDSQELWI 816

Query: 389  L-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                  A+  GE             +   G D++  T                R   KV+
Sbjct: 817  ASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVI 867

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              A  Y  G                 FA  +     P  +  +E   + M+         
Sbjct: 868  NYARIYGAG---------------QLFAETLLRQFNP-TFSASEAKAKAMKMFSITKG-- 909

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI--IARKRRDVPLVYMKK 553
                    +RV +   + H  + +     ++A    I+  + +  +  +           
Sbjct: 910  --------KRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAEVFHRPNWQGGTESAM 961

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---IL 610
                  +   S     +     +R+    T  +  +   +       +VQ+ + D   ++
Sbjct: 962  FNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQR--FLPTRINWVVQSGAVDFLHLM 1019

Query: 611  AEGMMNATKAGYDIVLTVHDE---IVCETPDTDEFNASMLYHLMTS 653
               M     +     L+ HDE   +V E        A  + +LMT 
Sbjct: 1020 LVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065



 Score = 44.4 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 15/140 (10%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR---------SNG 104
           P  L     +    +V HN  ++R  LK  + ++    R++ T+ L              
Sbjct: 241 PDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAM 300

Query: 105 LPSALKAVGEALK-LSSQKMEEGKELIARFCKGET-----HECLYDRNKPNHREAWRLFG 158
           L S  +   E L  L    +    E+   +C G+T          +      R++++   
Sbjct: 301 LKSKKEPAAEDLGWLEQSPLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLT 360

Query: 159 EYCKGDVTVTREIFKRLEPL 178
            YC  DV  T  I + L PL
Sbjct: 361 NYCASDVEATHRILRVLYPL 380


>gi|194100488|ref|YP_002003333.1| gp5 [Yersinia phage Yepe2]
 gi|193201221|gb|ACF15702.1| gp5 [Yersinia phage Yepe2]
          Length = 706

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 70/267 (26%), Gaps = 71/267 (26%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQA------IQVFNN 279
           +V +    + +   L     + +             VL   K   P A      I+ +  
Sbjct: 332 VVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLM 391

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +         N  +  +  DGR+ G++   G                           
Sbjct: 392 IQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNG--------------------------- 424

Query: 340 DQIITHLPTSITSDPDPLQIISDCV------RSCVIA--------SEGKKLVVADLAGIE 385
                    +  S P+  Q+ S         R+   A         +    V  D +G+E
Sbjct: 425 ----AVTGRATHSFPNVAQVPSIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLE 480

Query: 386 ARVLAWMA---GEQWKLKAFETGEDLYV--TTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            R L        E   ++   TG D++      A    +         R   K      G
Sbjct: 481 LRCLGHFMYRYDEGEYVETILTG-DIHTKNQMAA---GLPT-------RDNAKTFNGIYG 529

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +  GA A  K+    G        L+K
Sbjct: 530 FLYGAGA-AKIGQIVGGTSEDGKRLIK 555


>gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
          Length = 205

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 23/170 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + +   + L      D    L            LK  L +     + H +
Sbjct: 25  IDTETMGLNPHRD--RLCLVQLSGGDGTAHLVKFDGKSYDAPNLKALLADPKSLKIFHFA 82

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIA 131
            F+  VL+    +   PI+       LAR+      L   VGE L +   K ++  +   
Sbjct: 83  RFDVAVLEHYLGVVTSPIYCTKIASKLARTYTDRHGLKDLVGEILGIEISKQQQSSDW-- 140

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                               E       Y   DV     +  RL+ + ++
Sbjct: 141 -----------------GAAELSDSQRSYAANDVLHLHALKTRLDEMLAR 173


>gi|297559551|ref|YP_003678525.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843999|gb|ADH66019.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 554

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 42/136 (30%), Gaps = 11/136 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
            R H +            T     LQ I   +R  V A  G  LV AD   +E RVLA +
Sbjct: 298 GRFHPDYVVGGVVSGRWATRGGGALQ-IPRSLRGAVRADPGWVLVRADAGQLEPRVLAAV 356

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+     A    + LY                   R   K+  L+  Y   +     + 
Sbjct: 357 SGDDALAAAAAEED-LYARLAVHV---------GGDRDRAKIGMLSAMYGQTSGDAAPLL 406

Query: 453 STTGLNLNTFAHLVKT 468
           +T           V +
Sbjct: 407 ATMRRLYPRALEYVDS 422


>gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
 gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
          Length = 209

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++         P+ LK  L +  V  + H +
Sbjct: 27  IDTETLGLNPHRDRLCV--VQVSRGDGSADVVQIRPGDPAPERLKAVLADAGVVKIFHFA 84

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+  VL   F  +  P++       LAR+      LK V   L         G +L   
Sbjct: 85  RFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVVRELV--------GVDL--- 133

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                  +   D       +A     +Y   DV       +RL+ + ++E
Sbjct: 134 ----SKQQQSSDWGAGTLSQAQ---IDYAASDVLHLHAARERLDAMLARE 176


>gi|226294174|gb|EEH49594.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb18]
          Length = 1183

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 27/215 (12%)

Query: 316 TGRWSGCVFPPQ--NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           TGR        Q   LP+         + + +   + ++       +   +++ V A  G
Sbjct: 694 TGRSLSDPSLKQGFILPQVIPMGTITRRAVENTWLTASNA--KANRVGSELKAMVRAPPG 751

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVA 420
              V AD+   E  + A + G+         A            G DL+  T  +   ++
Sbjct: 752 YVFVGADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS 809

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                   R   KV      Y  G K    +      ++         +   +E + A  
Sbjct: 810 --------RNDAKVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKEVASKLYKETKGART 861

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             + + +        + F+    E   +  R +  
Sbjct: 862 NRKQLSDRPFWRGGTESFVFNKLEEFAEQERPRTP 896


>gi|225684515|gb|EEH22799.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb03]
          Length = 1220

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 27/215 (12%)

Query: 316 TGRWSGCVFPPQ--NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           TGR        Q   LP+         + + +   + ++       +   +++ V A  G
Sbjct: 731 TGRSLSDPSLKQGFILPQVIPMGTITRRAVENTWLTASNA--KANRVGSELKAMVRAPPG 788

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVA 420
              V AD+   E  + A + G+         A            G DL+  T  +   ++
Sbjct: 789 YVFVGADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS 846

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                   R   KV      Y  G K    +      ++         +   +E + A  
Sbjct: 847 --------RNDAKVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKEVASKLYKETKGART 898

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             + + +        + F+    E   +  R +  
Sbjct: 899 NRKQLSDRPFWRGGTESFVFNKLEEFAEQERPRTP 933


>gi|262212203|gb|ACY35718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P   Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 2   PYLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 60

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 61  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 109


>gi|262212281|gb|ACY35757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLEPRCLGHYLSRYDGSKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|108861996|ref|YP_654112.1| 13 [Enterobacteria phage K1-5]
 gi|40787082|gb|AAR90053.1| 13 [Enterobacteria phage K1-5]
          Length = 846

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 355 DPLQIISDCV---RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           + + I +  +   R   IA +GK ++  D AG+E RVL+    +    +    G D++  
Sbjct: 541 NVVNIPARGLYPLRDLFIAGKGKLILGCDGAGLELRVLSHFMNDPEYQEIVLHG-DIHT- 598

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 N   A + K  R + K    A  Y  G      +  
Sbjct: 599 -----HNQMKAGLPK--RDMAKTFIYAFLYGSGIANLAAVCG 633



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 32/131 (24%)

Query: 560 LMLPSGRSLVYRDV--GNNRSYLNTTTRQLTREYTYGGKLTEN-----IVQAVSRDILAE 612
           + LPS   L    +  GN   YL        R    GG+L E+     ++Q      +  
Sbjct: 648 VELPSLARLRENVIAQGNKFGYLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSLCMKY 707

Query: 613 GMMN-----------ATKAGYDI-VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
            ++                G    +  VHDEI  E P+ +    +               
Sbjct: 708 ALVRAFAVMRKEGVALDSMGNPCGIANVHDEIQMEVPEDEVLYLNY-------------D 754

Query: 661 LPLKAEGYESK 671
           LP   EG+E++
Sbjct: 755 LPFTLEGFETE 765


>gi|17136648|ref|NP_476821.1| tamas [Drosophila melanogaster]
 gi|27923967|sp|Q27607|DPOG1_DROME RecName: Full=DNA polymerase subunit gamma-1, mitochondrial; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            Short=Protein tamas; Flags: Precursor
 gi|7298099|gb|AAF53338.1| tamas [Drosophila melanogaster]
 gi|201065799|gb|ACH92309.1| FI06005p [Drosophila melanogaster]
          Length = 1145

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 102/346 (29%), Gaps = 62/346 (17%)

Query: 330  PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            P+         + +     + + S PD    +   +RS V A  G +LV AD+   E  +
Sbjct: 760  PQVVACGTLTRRAMEPTWMTASNSRPD---RLGSELRSMVQAPPGYRLVGADVDSQELWI 816

Query: 389  L-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                  A+  GE             +   G D++  T                R   KV+
Sbjct: 817  ASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVI 867

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              A  Y  G                 FA  +     P  +  +E   + M+         
Sbjct: 868  NYARIYGAG---------------QLFAETLLRQFNP-TFSASEAKAKAMKMFSITKG-- 909

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI--IARKRRDVPLVYMKK 553
                    +RV +   + H  + +     ++A    I+  + +  +  +           
Sbjct: 910  --------KRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAEVFHRPNWQGGTESAM 961

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---IL 610
                  +   S     +     +R+    T  +  +   +       +VQ+ + D   ++
Sbjct: 962  FNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQR--FLPTRINWVVQSGAVDFLHLM 1019

Query: 611  AEGMMNATKAGYDIVLTVHDE---IVCETPDTDEFNASMLYHLMTS 653
               M     +     L+ HDE   +V E        A  + +LMT 
Sbjct: 1020 LVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065



 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR---------SNGLPSALKAVGEALK 117
            +V HN  ++R  LK  +  +    R++ T+ L              L S  +   E L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 -LSSQKMEEGKELIARFCKGET-----HECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            L    +    E+   +C G+T          +      R++++    YC  DV  T  I
Sbjct: 314 WLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 172 FKRLEPL 178
            + L PL
Sbjct: 374 LRVLYPL 380


>gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
 gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
          Length = 209

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++         P+ LK  L +  V  + H +
Sbjct: 27  IDTETLGLNPHRDRLCV--VQVSRGDGSADVVQIRPGDPAPERLKAVLADAGVVKIFHFA 84

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+  VL   F  +  P++       LAR+      LK V   L         G +L   
Sbjct: 85  RFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVVRELV--------GVDL--- 133

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                  +   D       +A     +Y   DV       +RL+ + ++E
Sbjct: 134 ----SKQQQSSDWGAGTLSQAQ---IDYAASDVLHLHAARERLDAMLARE 176


>gi|115387355|ref|XP_001211183.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
 gi|114195267|gb|EAU36967.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
          Length = 1131

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 62/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++  +    +   +++ + A  G   V AD+   E
Sbjct: 664 PQIIPMGTIT----RRAVENTWLTASNAKE--NRVGSELKAMIKAPPGYVFVGADVDSQE 717

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G D++  T      ++        R   
Sbjct: 718 LWI-ASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-HILGIS--------RNDA 767

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      ++         ++  +E +      R + E     
Sbjct: 768 KVFNYGRIYGAGVKFAATLLRQFNPSMTERETQEVASNLYKETKGTRTTRRILSEGPFWR 827

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 828 GGTESFVFNKLEEFAEQERPRTP 850


>gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 256

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 34/179 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQVLKEALENTDVT 67
           +D    G+  + +   + L      D    L   +           P  LK  + +  +T
Sbjct: 68  VDTETMGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NLKRVMADPSIT 124

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE-ALKLSSQKM 123
            + H + F+  +L+    + +     +CT + AR          L A+    L +   K 
Sbjct: 125 KIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCRDMLGVELSKQ 182

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           ++  +  A   K E                      Y   DV     ++ ++  L  +E
Sbjct: 183 QQTSDWGALELKPEQ-------------------LAYAASDVLYLHALWDKMSALLDRE 222


>gi|254581264|ref|XP_002496617.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
 gi|238939509|emb|CAR27684.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
          Length = 1239

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 94/342 (27%), Gaps = 91/342 (26%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP          + + +   + ++  +    I   +++ V A +G   V AD+   E  
Sbjct: 668 ILPGIVPMGTVTRRAVENTWLTASNAKE--NRIGSELKTQVKAPKGYSFVGADVDSEELW 725

Query: 388 VLAWMAGEQ-----------WKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A +  +            W         G DL+  T          Q+    R   K+
Sbjct: 726 I-ASLVSDSVFNIHGGTAIGWMCLEGTKNEGTDLHTKTA---------QILGCNRNEAKI 775

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G                    L+K  +     E+A+     + EN      
Sbjct: 776 FNYGRIYGAGV--------------KFATQLLKKFNPSLPDEEAQGIANQLYEN------ 815

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +  KK W      +  L+N+L    EQ          R       +     
Sbjct: 816 -TKGKIQRSKIFKKFWFGGSESI--LFNKLESIAEQ-------DEPRTPVLGCGITFSLM 865

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILA 611
           K NL                              R  T+        +Q+   D   +L 
Sbjct: 866 KRNL------------------------------RTNTFLPSRINWTIQSSGVDYLHLLC 895

Query: 612 EGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             M   +        + +++HDEI     D D++ ASM   +
Sbjct: 896 CSMNYLIATYHIKARLCISIHDEIRFLVADEDKYRASMALQV 937


>gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510]
 gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510]
          Length = 208

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + +   + L      D  V L            LK  L +  VT + H +
Sbjct: 27  IDTETMGLNPHRD--RLCLVQLSAGDGAVHLVQFRPGRYEAPNLKRLLTDPGVTKLFHFA 84

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIA 131
            F+  V+KA   +D  P++       L R+      LK + +  L +   K ++  +   
Sbjct: 85  RFDVAVMKAYLGVDCRPVYCTKVASKLVRTFTDRHGLKDLCKDLLGVEISKQQQSSDW-- 142

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                               E      +Y   DV    ++  +L+ + ++E
Sbjct: 143 -----------------GAPELTTDQMKYAASDVLHLHDLKAKLDVMLARE 176


>gi|194860399|ref|XP_001969574.1| GG10182 [Drosophila erecta]
 gi|190661441|gb|EDV58633.1| GG10182 [Drosophila erecta]
          Length = 1142

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 99/347 (28%), Gaps = 64/347 (18%)

Query: 330  PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            P+         + +     + ++       +   +RS V A  G +LV AD+   E  + 
Sbjct: 757  PQVVACGTLTRRAMEPTWMTASN--SRTDRLGSELRSMVQAPPGYRLVGADVDSQELWIA 814

Query: 390  -----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
                 A+  GE             +   G D++  T                R   KV+ 
Sbjct: 815  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVIN 865

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             A  Y  G                 FA  +     P  +  +E   + M+          
Sbjct: 866  YARIYGAG---------------QLFAETLLRQFNP-TFSASEAKAKAMKMFSITKG--- 906

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI--IARKRRDVPLVYMKKD 554
                   +RV +   + H  + +     ++A    I+  + +  +  +            
Sbjct: 907  -------KRVYRLREEFHDELDDRAYSSYEASRLAIQRNRTLTEVFHRPNWQGGTESAMF 959

Query: 555  KNNLILMLPSGRSLVYRDVGNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRD---I 609
                 +   S     +     +R+        ++     T        +VQ+ + D   +
Sbjct: 960  NRLEEIATGSQPRTPFLGGRLSRALEADGGPEQEQRFLPTR----INWVVQSGAVDFLHL 1015

Query: 610  LAEGMMNATKAGYDIVLTVHDE---IVCETPDTDEFNASMLYHLMTS 653
            +   M     +     L+ HDE   +V E        A  + +LMT 
Sbjct: 1016 MLVSMRWLMGSHVRFCLSFHDELRYLVKEEFSPKAALAMHITNLMTR 1062



 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR---------SNGLPSALKAVGEALK 117
            +V HN  ++R  LK  + ++    R++ T+ L              L S  +   E L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 -LSSQKMEEGKELIARFCKG-----ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            L    +    ++   +C G     E      +      R++++    YC  DV  T  I
Sbjct: 314 WLEQSSLNSLVDVHRLYCGGDALSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 172 FKRLEPL 178
            + L PL
Sbjct: 374 LRVLYPL 380


>gi|302902991|ref|XP_003048764.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
 gi|256729698|gb|EEU43051.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
          Length = 1143

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 63/205 (30%), Gaps = 29/205 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++       +   +++ V A +G   V AD+   E
Sbjct: 671 PQIIPMGTIT----RRAVENTWLTASNAKK--NRVGSELKAMVKAPKGYCFVGADVDSQE 724

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T +    ++        R   
Sbjct: 725 LWI-ASLVGDATFKLHGGNAVGFMTLEGTKSQGTDLHSRTAS-ILGIS--------RNNA 774

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +L+        +      +  +   + + +     
Sbjct: 775 KVFNYGRIYGAGLKFAATLLRQFNPDLSERQTTETASRLYANTKGTKTNRKILYKRPFWR 834

Query: 493 AIEDLFIGTACERVKKAWRQKHSRV 517
              + F+    E   +  R +   +
Sbjct: 835 GGTESFVFNKLEEFAEQERPRTPAL 859


>gi|225388910|ref|ZP_03758634.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
 gi|225045019|gb|EEG55265.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
          Length = 67

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F++   QVT  QR   K +   + Y   A     ++    ++       +  N   E +
Sbjct: 1   MFHIPLDQVTPLQRRNAKAVNFGIVYGISAF---GLSEDLSISRKEAVEYI--NKYFETY 55

Query: 476 EDAENFC 482
              + F 
Sbjct: 56  PGVKTFL 62


>gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
 gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
          Length = 206

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 26/177 (14%)

Query: 10  TRSP-IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           T S  ID    G+  + + +CV+       D   ++            LK+ L +  +  
Sbjct: 19  THSAAIDTETMGLNPHRDRLCVVQM--SPGDGSADVIQIAQGQREAPNLKQLLADPTIVK 76

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-K 127
           + H + F+   L   F   +      CT + +R                + +     G K
Sbjct: 77  IFHFARFDLAALSNAFG--VMPQPVYCTKIASRL---------------IRTYTDRHGLK 119

Query: 128 ELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +L+      +    +   D       +A      Y   DV     +  +L+ + ++E
Sbjct: 120 DLVRELLNIELSKQQQSSDWGAQTLSDAQ---LAYAASDVLHLHALRDKLDAMLARE 173


>gi|229472559|gb|ACQ72794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 14/123 (11%)

Query: 373 GKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           G  +V ADLAGIE R+LA      +  +        D++     +             R 
Sbjct: 1   GYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNGDIHQENADKI---------GISRR 51

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
           + K +  A  Y  G    +K+  +    L+  A   K     + + DA      +     
Sbjct: 52  LVKTVTYAFLYGAGD---KKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVTAVK 108

Query: 491 EHA 493
             A
Sbjct: 109 SKA 111


>gi|254416561|ref|ZP_05030312.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176527|gb|EDX71540.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 303

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 101/304 (33%), Gaps = 61/304 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-----HPVELWDCVHDPVMPQV-L 57
           L++D E     D          +   + L     D        V + D ++ P +    +
Sbjct: 23  LWLDTEV---ADYKT-------DTPQLSLIQVLADGNDLTAESVGILDVLYQPELADEFI 72

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            + + N  +  V HN+ ++R  L              CTL LA++             L 
Sbjct: 73  AKVMYNPAIEKVFHNASYDRKFLGKH-----KAKNVTCTLELAKTIPYYR--------LP 119

Query: 118 LSSQKMEEGKELIARF--CKG--ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           + + +++   E    F  C    +T +    R +P          +Y   DV     + +
Sbjct: 120 VPNYQLKTLTE---YFGICPQVDKTEQTGDWRKRPLSP----RQLDYAAKDVVYVAHLHR 172

Query: 174 RL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            L      +P +   + L    + I  R   +D  +     QI +  +  +  +     +
Sbjct: 173 HLLDLAQPDPATEDIEALTLRYRQIEHRWKQLDTEIQ----QIKERLKAAMQAQNVKKVH 228

Query: 228 GLVSSSRCLE-------KLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVF 277
           G   SS+          +L      + G+ L+    LT++  Q++    ++L  +     
Sbjct: 229 GFRLSSQNRTSKKVAFHQLAEV-TKKLGIELDISVQLTKSLQQKLGEVMEELPVEEENKT 287

Query: 278 NNRM 281
             R+
Sbjct: 288 TWRL 291


>gi|83571734|ref|YP_424986.1| putative DNA polymerase [Enterobacteria phage K1E]
 gi|83308185|emb|CAJ29417.1| gp13 protein [Enterobacteria phage K1E]
          Length = 848

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 12/102 (11%)

Query: 355 DPLQIISDCV---RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           + + I +  +   R   IA +GK ++  D AG+E RVL+    +         G D++  
Sbjct: 541 NVVNIPARGLYPLRDLFIAGKGKLILGCDGAGLELRVLSHFMNDPEYQDIVLHG-DIHT- 598

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 N   A + K  R + K    A  Y  G      +  
Sbjct: 599 -----HNQMKAGLPK--RDMAKTFIYAFLYGSGIANLAAVCG 633



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 32/131 (24%)

Query: 560 LMLPSGRSLVYRDV--GNNRSYLNTTTRQLTREYTYGGKLTEN-----IVQAVSRDILAE 612
           + LPS   L    +  GN   YL        R    GG+L E+     ++Q      +  
Sbjct: 648 VELPSLARLRENVIAQGNKFGYLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSLCMKY 707

Query: 613 GMMN-----------ATKAGYDI-VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
            ++                G    +  VHDEI  E P+ +    +               
Sbjct: 708 ALVRAFAVMRKEGVALDSMGNPCGIANVHDEIQMEVPEDEVLYLNY-------------D 754

Query: 661 LPLKAEGYESK 671
           LP   EG+E++
Sbjct: 755 LPFTLEGFETE 765


>gi|47934610|gb|AAT39743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 96

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCV------RSCVIASEGKKLVVADLAGIEA 386
            R H ++              P+  Q+ S         R C    EGK LV AD + +E 
Sbjct: 21  HRVHGKVITNGAVTGRMTHHSPNMAQVPSSSSPWGHECRDCWTVDEGKILVGADASSLEL 80

Query: 387 RVLAWMAGEQ 396
           R+LA    ++
Sbjct: 81  RMLAHYMKDE 90


>gi|171686350|ref|XP_001908116.1| hypothetical protein [Podospora anserina S mat+]
 gi|161087386|gb|ABX56854.1| mitochondrial DNA polymerase gamma catalytic subunit [Podospora
           anserina]
 gi|170943136|emb|CAP68789.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1155

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 58/206 (28%), Gaps = 34/206 (16%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   +++ V A  G   V AD+   E
Sbjct: 667 PQVIPM----GTVTRRAVENTWLTASNAKK--NRVGSELKAMVRAPPGYVFVGADVDSEE 720

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T A    +         R   
Sbjct: 721 LWI-ASVVGDATFKLHGGNAIGFMTLEGTKAQGTDLHSRTAA-ILGIT--------RNDA 770

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHL-VKTNSAPEEWEDAENFCRWMQENHPE 491
           KV      Y  G K   ++      +L+    L +             N     +     
Sbjct: 771 KVFNYGRIYGAGLKFAGQLLRQFNPSLSEQETLDIAGKLYATTKGTKTNRKSLYKRPFWR 830

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRV 517
              E         ++++   Q H R 
Sbjct: 831 GGTESFV----FNKLEEFAEQSHPRT 852


>gi|313905697|ref|ZP_07839058.1| hypothetical protein EubceDRAFT_1773 [Eubacterium cellulosolvens 6]
 gi|313469521|gb|EFR64862.1| hypothetical protein EubceDRAFT_1773 [Eubacterium cellulosolvens 6]
          Length = 66

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 651 MTSNPSWAKGLPLKAEGYESKRYRK 675
           M  +P W   + L+A+GYE+  Y+K
Sbjct: 41  MGRSPDWIPDILLRADGYETNFYKK 65


>gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 203

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 24/189 (12%)

Query: 7   DFETRSP--IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           DFE      ID    G+  Y + +C++   F   +    L   ++       LK  L + 
Sbjct: 13  DFELEGDLAIDTETMGLNLYRDKLCLL--QFSNGNGDAHLVHFLNQNYNAPNLKNLLSDK 70

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           +   + H + F+   +K    +D+      CT + ++       ++   E+  L     +
Sbjct: 71  ERCKIFHFARFDLAAIKKYLGIDL--ENIFCTKISSKL------VRTYTESHGLK----D 118

Query: 125 EGKELIA-RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
             +EL+     K +        N  + ++      EY   DV    ++ + L  +  KE 
Sbjct: 119 ICRELLGVNISKQQQSSYWGADNLSSDQQ------EYAAKDVLYLHKLREHLIEMLVKEN 172

Query: 184 ELWYLDQTI 192
             + L Q I
Sbjct: 173 R-FELAQDI 180


>gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
 gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
          Length = 204

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 24/176 (13%)

Query: 10  TRSP-IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           T S  ID    G+  + + +CV        D   ++            LK+ L +  V  
Sbjct: 17  THSVAIDTETMGLHPHRDRLCV--VQLSNGDGSADVVQIPQGATDAPNLKKLLGDPAVVK 74

Query: 69  VAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEG 126
           + H + F+   L   F  +  P++       L R+      L   V E L +   K ++ 
Sbjct: 75  IFHFARFDLAALYKTFGVMPQPVYCTKIASRLTRTYTDRHGLKDLVRELLGIDLSKQQQS 134

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            +                               Y   DV     +  RL+ + ++E
Sbjct: 135 SDW-------------------GADSLSDAQLAYAASDVLHLHALRDRLDTMLARE 171


>gi|262342313|gb|ACY54667.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 14/117 (11%)

Query: 355 DPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLYV 410
           +  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++ 
Sbjct: 2   NLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                 +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262342165|gb|ACY54593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 14/117 (11%)

Query: 355 DPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLYV 410
           +  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++ 
Sbjct: 5   NLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIHT 63

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                 +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 64  ALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 111


>gi|262212343|gb|ACY35788.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 14/117 (11%)

Query: 355 DPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLYV 410
           +  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++ 
Sbjct: 2   NLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                 +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212315|gb|ACY35774.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 14/117 (11%)

Query: 355 DPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLYV 410
           +  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++ 
Sbjct: 2   NLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                 +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|296277367|ref|ZP_06859874.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MR1]
          Length = 30

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +  +M     WAKGL L ++G+ S  Y K
Sbjct: 1   IETIMNKPVDWAKGLNLNSDGFTSPFYMK 29


>gi|307106798|gb|EFN55043.1| hypothetical protein CHLNCDRAFT_134898 [Chlorella variabilis]
          Length = 158

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 18/85 (21%)

Query: 581 NTTTRQLT-REYTYGGKLTENIVQAVSRDILAEGMMNATKA---------GYDIVLTVHD 630
           N   +    R      K     +Q  + D++   M+   ++         G  IVL +HD
Sbjct: 51  NINLQSWRLRGEAER-KAVNTPMQGSAADVMKAAMIALGESLQIGQAGEGGAAIVLMIHD 109

Query: 631 EIVCETPDTDEFNASMLYHLMTSNP 655
           E+V E        A+++   M   P
Sbjct: 110 ELVIEV-------AAIVRECMEVVP 127


>gi|325091155|gb|EGC44465.1| DNA polymerase gamma [Ajellomyces capsulatus H88]
          Length = 1146

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 61/211 (28%), Gaps = 25/211 (11%)

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
             +  +     LP+         + + +   + ++       +   +++ V A  G   V
Sbjct: 658 SSNSTLKQGYILPQIIPMGTITRRAVENTWLTASNA--KANRVGSELKAMVRAPPGYVFV 715

Query: 378 VADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQV 424
            AD+   E  + A + G+         A            G DL+  T +    ++    
Sbjct: 716 GADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTAS-ILGIS---- 769

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   KV      Y  G K    +      +++            +E +      + 
Sbjct: 770 ----RNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEQETKRVAAKLYKETKGTRTNRKI 825

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           + +N       + F+    E   +  R +  
Sbjct: 826 LSDNPFWRGGTESFVFNKLEEFAEQERPRTP 856


>gi|198473302|ref|XP_001356241.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
 gi|198139395|gb|EAL33303.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
          Length = 1153

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 52/177 (29%), Gaps = 29/177 (16%)

Query: 330 PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           P+         + +     + + S P+    +   +RS V A  G +LV AD+   E  +
Sbjct: 765 PQVVACGTLTRRAMEPTWMTASNSRPN---RLGSELRSMVQAPPGYRLVGADVDSQELWI 821

Query: 389 LAWMAGEQ--------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            + + G+                   +   G D++  T                R   KV
Sbjct: 822 ASVL-GDAYACGQHGATPLGWMTLSGSKANGSDMHSITAKAV---------GISRDHAKV 871

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
           +  A  Y  G +  + +        +      K           +   R  +E H E
Sbjct: 872 INYARIYGAGQQFAETLLRQFNPTFSASEAKAKAMKMF-AITKGKRVYRLREEFHDE 927


>gi|195164742|ref|XP_002023205.1| GL21087 [Drosophila persimilis]
 gi|194105290|gb|EDW27333.1| GL21087 [Drosophila persimilis]
          Length = 1153

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 52/177 (29%), Gaps = 29/177 (16%)

Query: 330 PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           P+         + +     + + S P+    +   +RS V A  G +LV AD+   E  +
Sbjct: 765 PQVVACGTLTRRAMEPTWMTASNSRPN---RLGSELRSMVQAPPGYRLVGADVDSQELWI 821

Query: 389 LAWMAGEQ--------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            + + G+                   +   G D++  T                R   KV
Sbjct: 822 ASVL-GDAYACGQHGATPLGWMTLSGSKANGSDMHSITAKAV---------GISRDHAKV 871

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
           +  A  Y  G +  + +        +      K           +   R  +E H E
Sbjct: 872 INYARIYGAGQQFAETLLRQFNPTFSASEAKAKAMKMF-AITKGKRVYRLREEFHDE 927


>gi|262212307|gb|ACY35770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +     Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCPIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262212263|gb|ACY35748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFEPSDNHLQVGSDASGPELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALAG-IYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|229472345|gb|ACQ72687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 12/106 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYV 410
           P+  Q+ S    R        +  V AD +G+E R L       +  K        D++ 
Sbjct: 1   PNLAQVPSAHEYRELFHPGANRSQVGADASGLELRRLGHYLARFDGGKFAKEVVEGDIHT 60

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                 +           R  GK +   L Y GG       A  + 
Sbjct: 61  ALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGASK 97


>gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
 gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
          Length = 204

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 57/179 (31%), Gaps = 23/179 (12%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           IDF     ID    G+  + + +CV        D    L            L   L N  
Sbjct: 14  IDFGASVAIDTETLGLKPHRDRLCV--VQLSAGDGNAHLVQFEKGHYDAPNLTALLVNPA 71

Query: 66  VTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKM 123
           V  + H   F+  V++    +   P++       L R+      LK +  E L +   K 
Sbjct: 72  VLKIFHFGRFDIAVMQQYLGVKTGPVYCTKIAAKLVRTFTERHGLKDLCRELLGVELSK- 130

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                      + +T +    +  P           Y   DV     + ++L+ L ++E
Sbjct: 131 -----------QQQTSDWGQAKLTPEQ-------LSYAASDVLHLHALKEKLDALLARE 171


>gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
 gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
          Length = 209

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++         P+ L   L +  V  + H +
Sbjct: 27  IDTETLGLNPHRDRLCV--VQVSRGDGSADVVQIRPGDPAPERLMAVLADAGVVKIFHFA 84

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+  VL   F  +  P++       LAR+      LK V   L         G +L   
Sbjct: 85  RFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVVRELV--------GVDL--- 133

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                  +   D       +A     +Y   DV       +RL+ + ++E
Sbjct: 134 ----SKQQQSSDWGAGTLSQAQ---IDYAASDVLHLHAARERLDAMLARE 176


>gi|262342181|gb|ACY54601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 13/106 (12%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLYVTTYARSFNVAP 421
           RS    S+    V +D +G+E R L   ++        +    G D++       +    
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIHTALA-EIYGTD- 69

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  R  GK +   L Y GG       A  +  + +     ++
Sbjct: 70  -------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|262342177|gb|ACY54599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 14/117 (11%)

Query: 355 DPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLYV 410
           +  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++ 
Sbjct: 3   NLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIHT 61

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                 +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 62  ALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASRSSASRKGQEIR 109


>gi|262342163|gb|ACY54592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 13/106 (12%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLYVTTYARSFNVAP 421
           RS    S+    V +D +G+E R L   ++        +    G D++       +    
Sbjct: 16  RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIHTALA-EIYGTD- 72

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  R  GK +   L Y GG       A  +  + +     ++
Sbjct: 73  -------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 111


>gi|47934808|gb|AAT39842.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 253

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCV------RSCVIASEGKKLVVADLAGIEARV 388
            H  ++        +  S P+  Q+           R       G  L+ +D +G+E R 
Sbjct: 170 IHGSVNPNGAVTGRATHSYPNVAQVPGSQSEYGKECRQLFTVPPGWVLMGSDASGLELRC 229

Query: 389 LAWMAG--EQWKLKAFETGEDLYV 410
           L       ++          D++ 
Sbjct: 230 LGHFMARYDKGAYIKEILEGDIHT 253


>gi|262212335|gb|ACY35784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS +  S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLLKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  GK +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 203

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 59/180 (32%), Gaps = 22/180 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +C++   F   +         +   +   LK  L +     + H +
Sbjct: 22  IDTETMGLNLHRDKLCLL--QFSNGNGEAHFVHFTNQDYIAPNLKALLLDKTRCKIFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   +K   ++D+      CT + ++       +        +L +  + + ++    
Sbjct: 80  RFDLAFIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLNDLCRELLNINISKQQQSSYW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                + E                  EY   DV    ++   L+ +  KE   + L Q I
Sbjct: 138 GADNLSSEQ----------------KEYAAKDVLYLHQLKDILQKMLLKENR-YELAQDI 180


>gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 28/173 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + +   + L      D    L   +     P  L   + +  +T + H +
Sbjct: 28  VDTEAMGLNPHRD--RLCLVQISAGDGSAHLVQILPGTPSP-NLARLMADPSITKLMHFA 84

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLSSQKMEEGKEL 129
            F+  +L+    + +     ICT + ++          L  +  E L +   K       
Sbjct: 85  RFDVAILQHSLGVTVAP--VICTKIASKLVRTFTERHGLAQLCRELLGVDLSK------- 135

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                + +T +       P           Y   DV     ++ +LE L  +E
Sbjct: 136 -----QQQTSDWGAPELTPEQ-------KAYAASDVLHLHALWTKLEALLHRE 176


>gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease [polymorphum gilvum SL003B-26A1]
 gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1]
          Length = 206

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 23/173 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + + +CV        D   ++            L   L +     + H +
Sbjct: 24  VDTETLGLNPHRDRLCV--VQLSPGDGTADVVQIARGQRAAPNLARLLTDPAKMKIFHFA 81

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL+    +++ P+        L R+      LK +  E L +   K ++  +  A
Sbjct: 82  RFDLAVLRHNLGIEVAPVWCTKIASKLVRTYTDRHGLKDITRELLGVDLSKQQQSSDWAA 141

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                   E L D               Y   DV     + ++L  +  +E+ 
Sbjct: 142 --------ETLTDAQLA-----------YAASDVLHLHALREKLAAMLEREER 175


>gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
 gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
          Length = 204

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            LK+ L + ++  + H +
Sbjct: 22  IDTETMGLHPHRDRLCV--VQLSNGDGSADVVQIPQGHSDAPNLKKLLGDPNILKIFHFA 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIA 131
            F+   L      +  P++       L R+      L   V E L +   K ++      
Sbjct: 80  RFDLAALSNALGVMPQPVYCTKIASRLTRTYTDRHGLKDLVRELLNVDLSKQQQSS---- 135

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                       D       +A      Y   DV     +  +L+ + ++E
Sbjct: 136 ------------DWGADTLSDAQ---LAYAASDVLHLHALRDKLDAMLARE 171


>gi|310789378|gb|EFQ24911.1| DNA polymerase family A [Glomerella graminicola M1.001]
          Length = 1148

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 27/152 (17%)

Query: 325 PPQ--NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
             Q   LP+         + + +   + ++       +   ++S V A  G   V AD+ 
Sbjct: 668 QVQGYILPQIIPMGTITRRAVENTWLTASNAKK--NRVGSELKSMVKAPPGYSFVGADVD 725

Query: 383 GIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQR 429
             E  + A + G+         A            G DL+  T +    +         R
Sbjct: 726 SEELWI-ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------R 775

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
              KV      Y  G K   ++      NL+ 
Sbjct: 776 NDAKVFNYGRIYGAGLKFAGQLLRQFNPNLSE 807


>gi|195338293|ref|XP_002035759.1| GM15104 [Drosophila sechellia]
 gi|194129639|gb|EDW51682.1| GM15104 [Drosophila sechellia]
          Length = 1145

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 101/346 (29%), Gaps = 62/346 (17%)

Query: 330  PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            P+         + +     + + S PD    +   +RS V A  G +LV AD+   E  +
Sbjct: 760  PQVVACGTLTRRAMEPTWMTASNSRPD---RLGSELRSMVQAPPGYRLVGADVDSQELWI 816

Query: 389  L-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                  A+  GE             +   G D++  T                R   KV+
Sbjct: 817  ASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVI 867

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              A  Y  G                 FA  +     P  +  +E   + M+         
Sbjct: 868  NYARIYGAG---------------QLFAETLLRQFNP-TFSASEAKAKAMKMFSITKG-- 909

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI--IARKRRDVPLVYMKK 553
                    +RV +   + H  + +     ++A    I+  + +  +  +           
Sbjct: 910  --------KRVYRLREEFHDELDDRAYSSYEASRLAIQRNRTVAEVFHRPNWQGGTESAM 961

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---IL 610
                  +   S     +     +R+    T     +   +       +VQ+ + D   ++
Sbjct: 962  FNRLEEIATGSQPRTPFLGGRLSRALEADTGPDQEQR--FLPTRINWVVQSGAVDFLHLM 1019

Query: 611  AEGMMNATKAGYDIVLTVHDE---IVCETPDTDEFNASMLYHLMTS 653
               M     +     L+ HDE   +V E        A  + +LMT 
Sbjct: 1020 LVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTR 1065



 Score = 44.4 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR---------SNG 104
           P  L     +    +V HN  ++R  LK  + ++    R++ T+ L              
Sbjct: 241 PDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSGVTSYQRAM 300

Query: 105 LPSALKAVGEALK-LSSQKMEEGKELIARFCKG-----ETHECLYDRNKPNHREAWRLFG 158
           L S  +   E L  L    +    E+   +C G     E      +      R++++   
Sbjct: 301 LKSKKEPAAEDLGWLEQSSLNSLVEVHRLYCGGDALSKEPRNIFVEGTLEQVRQSFQSLT 360

Query: 159 EYCKGDVTVTREIFKRLEPL 178
            YC  DV  T  I + L PL
Sbjct: 361 NYCASDVEATHRILRVLYPL 380


>gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
 gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
          Length = 209

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++         P+ LK  L +  V  + H +
Sbjct: 27  IDTETLGLNPHRDRLCV--VQVSRGDGSADVVQIRPSDPAPERLKAVLADAGVVKIFHFA 84

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+  VL   F  +  P++       LAR+      LK V   L         G +L   
Sbjct: 85  RFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVVRELV--------GVDL--- 133

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                  +   D       +A     +Y   DV       +RL+ + ++E
Sbjct: 134 ----SKQQQSSDWGAATLSQAQ---IDYAASDVLHLHAARERLDAMLARE 176


>gi|295670549|ref|XP_002795822.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
 gi|226284907|gb|EEH40473.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
          Length = 1142

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   +++ V A  G   V AD+   E
Sbjct: 669 PQVIPM----GTITRRAVENTWLTASNA--KANRVGSELKAMVRAPPGYVFVGADVDSEE 722

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T  +   ++        R   
Sbjct: 723 LWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGIS--------RNDA 772

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      ++             EE +      +         
Sbjct: 773 KVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKQVAAKLYEETKGTRTNRKIFSNRPFWR 832

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 833 GGTESFVFNKLEEFAEQERPRTP 855


>gi|330907546|ref|XP_003295846.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
 gi|311332479|gb|EFQ96060.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
          Length = 1157

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++           S+      +   ++S V A +G   V AD+   E
Sbjct: 671 PQIIPMGTITRRSVENT-----WLTASNAKK-NRVGSELKSMVRAPKGYCFVGADVDSQE 724

Query: 386 ARVLAWMAGEQW-------------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+                      G DL+  T A    ++        R   
Sbjct: 725 LWI-ASLIGDATFQLHGGNAVGFMTLEGTKAAGTDLHSRTAA-ILGIS--------RNDA 774

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +L             +  +  +   + + E     
Sbjct: 775 KVFNYGRIYGAGLKFASTLLRQFNPSLTEAQTTKTAEDLYKNTKGVKTIRKQLHERPFWR 834

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 835 GGTESFVFNKLEDFAEQERPRTP 857


>gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
 gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
          Length = 204

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 25/172 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D   EL          + L + L +  V  + H +
Sbjct: 22  IDTETLGLNHRRDRLCV--VQLSIGDGDAELVQIAKGQTQAENLVKLLVDPKVLKLFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIAR 132
            F+  +L   F   +      CT + ++                  +     G K+L   
Sbjct: 80  RFDMGILAKTFG--VMPAPVYCTKIASKLTR---------------TYTDRHGLKDLARE 122

Query: 133 FCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               E    +   D       +A +    Y   DV    ++ ++L+ + ++E
Sbjct: 123 LAGVEISKQQQSSDWGAATLTDAQQA---YAASDVLYLHQLKEKLDAMLARE 171


>gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 209

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 20/170 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + +   + L      +  V              LK+ +E +++T V H +
Sbjct: 29  VDTETMGLNPHRD--RLCLIQLCDPEGYVTAIRVTKGQQEAPKLKQLMEASNITKVFHFA 86

Query: 74  YFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   L+  F ++  PI        LAR+    S+       L+L   ++++       
Sbjct: 87  RFDVAQLRHHFGIETTPIFCTKIASKLART--YTSSHGLKSLVLELEGVELDK------- 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                T +     N     E       Y   DV     + ++L  + ++E
Sbjct: 138 -----TAQSSDWGNADKLSEEQ---LSYAANDVRYLLGVKEKLISMLNRE 179


>gi|38707863|ref|NP_944958.1| Putative DNA polymerase [Enterobacteria phage Felix 01]
 gi|33340466|gb|AAQ14817.1| putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 906

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 117/416 (28%), Gaps = 59/416 (14%)

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
             LTE++   +     +   +      +R R   ++       +  +  DGRL       
Sbjct: 504 PKLTESSYDTIEGELGQKIAKYY-TLMHRRRTIENSKDDEKGWLNQIRPDGRLSA----- 557

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           GA   G  +G +                          I + P    +  + +R+  I  
Sbjct: 558 GAMVFGTSTGRMTQ----------------------YGIVNVPSGAAVYGEPMRAVWICE 595

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT---YARSFNVAPA-----Q 423
           EG  ++  D    +  +L    G++   KA   G++    T     R +          +
Sbjct: 596 EGTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKESVEFTKQDDGRYYCKHLDKYLNPE 655

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN-------TFAHLVKTNSAPEEWE 476
             K  R   +     +     A     +        +           L+   +   +  
Sbjct: 656 TDKYLRYDAENDLYEVYTGTDAHTLNSIYFGLNKEEDIVRCRETQDEELLHEITKGRKKA 715

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERV-KKAWRQKHSRVSELWNELHQAFEQTIENG 535
               +         + A       T    + K+ +  +  ++ +L + L + F+ T +  
Sbjct: 716 KNGIYALLFGAGDEKFAKTIKASSTEEGALTKQTYFVRLPKIKKLLDRLEEDFKATKKAL 775

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
           + +  +        Y+K     L    P  + L Y  +G+     N       RE T   
Sbjct: 776 EEVFGKTSAIAKGGYIKVAGAWLWCKSP-HKLLNYTLMGSEAQVQNEGINLANRELTERK 834

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
               N                    G   V + HDE+  E P  D  +   +   M
Sbjct: 835 LTVLN--------------GRKPAIGARWVCSYHDEVSLEVPTKDVPDVKEIIDRM 876


>gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
 gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
          Length = 204

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 26/177 (14%)

Query: 10  TRSP-IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           T S  ID    G+  + + +CV        D   ++            LK+ L +  VT 
Sbjct: 17  THSVAIDTETLGLNPHRDRLCV--VQLSNGDGTADVVQIPAGHTDAPNLKKLLADPMVTK 74

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-K 127
           + H + F+  VL+  F +        CT + ++                + +     G K
Sbjct: 75  LFHFARFDIAVLEHAFGVMTQP--IYCTKIASKL---------------VRTYTDRHGLK 117

Query: 128 ELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +L+      E    +   D       EA      Y   DV     + ++L+ + ++E
Sbjct: 118 DLVRELLGVEISKQQQSSDWGAEKLSEAQLT---YAASDVLHLHALREKLDTMLARE 171


>gi|33340353|gb|AAQ14704.1|AF320576_163 putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 909

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 117/416 (28%), Gaps = 59/416 (14%)

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
             LTE++   +     +   +      +R R   ++       +  +  DGRL       
Sbjct: 507 PKLTESSYDTIEGELGQKIAKYY-TLMHRRRTIENSKDDEKGWLNQIRPDGRLSA----- 560

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           GA   G  +G +                          I + P    +  + +R+  I  
Sbjct: 561 GAMVFGTSTGRMTQ----------------------YGIVNVPSGAAVYGEPMRAVWICE 598

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT---YARSFNVAPA-----Q 423
           EG  ++  D    +  +L    G++   KA   G++    T     R +          +
Sbjct: 599 EGTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKESVEFTKQDDGRYYCKHLDKYLNPE 658

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN-------TFAHLVKTNSAPEEWE 476
             K  R   +     +     A     +        +           L+   +   +  
Sbjct: 659 TDKYLRYDAENDLYEVYTGTDAHTLNSIYFGLNKEEDIVRCRETQDEELLHEITKGRKKA 718

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERV-KKAWRQKHSRVSELWNELHQAFEQTIENG 535
               +         + A       T    + K+ +  +  ++ +L + L + F+ T +  
Sbjct: 719 KNGIYALLFGAGDEKFAKTIKASSTEEGALTKQTYFVRLPKIKKLLDRLEEDFKATKKAL 778

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
           + +  +        Y+K     L    P  + L Y  +G+     N       RE T   
Sbjct: 779 EEVFGKTSAIAKGGYIKVAGAWLWCKSP-HKLLNYTLMGSEAQVQNEGINLANRELTERK 837

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
               N                    G   V + HDE+  E P  D  +   +   M
Sbjct: 838 LTVLN--------------GRKPAIGARWVCSYHDEVSLEVPTKDVPDVKEIIDRM 879


>gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 203

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 30/193 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           TL  D      ID    G+  + + +C++   F   +    L    +       +K  L 
Sbjct: 15  TLEGDL----AIDTETMGLNLHRDKLCLL--QFSNGNGEAHLVHFTNQDYTAPNVKALLL 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           +     + H + F+   +K   ++D+      CT + ++          LK +   L   
Sbjct: 69  DKTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +        N  + +       EY   DV    ++   L+ + 
Sbjct: 124 ---------LNINISKQQQSSYWGADNLSSEQ------KEYAAKDVLYLHQLKDILQKML 168

Query: 180 SKEQELWYLDQTI 192
            KE   + L Q I
Sbjct: 169 LKENR-YELAQDI 180


>gi|168705115|ref|ZP_02737392.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 125

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 592 TYGGK------LTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDT 639
           TY G+           +Q  + D++ + M+       A +    ++LTVHDE+V E P  
Sbjct: 25  TYQGRTMAAREAINYEIQGSAADLIKKAMLGAHARMAAQRLHARMLLTVHDELVFEAPPA 84

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           +    + L    MTS       +PLK +
Sbjct: 85  EVEPLARLVREEMTSAIK--LDVPLKVD 110


>gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 209

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 29/195 (14%)

Query: 6   IDFETRSP--------IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
           +D+ T S         +D    G+    +   + L      +  V              L
Sbjct: 13  LDYPTLSEYLRSDALAVDTETMGLLPQRD--RLCLVQLCNPEGKVTAVRIAKGQTHAPNL 70

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEAL 116
           ++ LE+TDV  V H + F+   L+    + + P+        LAR+      LK +    
Sbjct: 71  QQLLESTDVVKVFHFARFDLATLRHNLKIHVQPVFCTKIASKLARTYTNRHGLKEL--VQ 128

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +L   +++                   D   P      +L   Y   DV     + ++L 
Sbjct: 129 ELEQVELD-------------KSSQSSDWGNPVSLSDAQLS--YAANDVRYLLSLKQKLS 173

Query: 177 PLSSKEQELWYLDQT 191
            +  +E E W L Q 
Sbjct: 174 QMLQRE-ERWQLAQE 187


>gi|45188230|ref|NP_984453.1| ADR357Cp [Ashbya gossypii ATCC 10895]
 gi|44983074|gb|AAS52277.1| ADR357Cp [Ashbya gossypii ATCC 10895]
          Length = 1131

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 31/152 (20%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + + +   + ++       I   +++ ++A EG   V AD+   E  
Sbjct: 631 IIPKIIPMGTVTRRAVENTWLTASNA--KANRIGSELKTKIVAPEGYSFVGADVDSEELW 688

Query: 388 VLAWMAGE----------------QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           + A + G+                +    A   G D++  T +         +    R  
Sbjct: 689 I-ASLIGDSVFNIHGGTAIGYMCLEGTKDA---GTDMHTKTAS---------ILGCSRNE 735

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            K+      Y  G +   ++       L+   
Sbjct: 736 AKIFNYGRIYGAGVRFAAQLLKQFNPTLSEEQ 767


>gi|327284750|ref|XP_003227099.1| PREDICTED: DNA polymerase subunit gamma-1-like [Anolis carolinensis]
          Length = 1165

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 99/346 (28%), Gaps = 53/346 (15%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V A  G  LV AD+   E  
Sbjct: 770  ILPQVITAGTVTRRAVEPTWLTASNA--RADRVGSELKAMVQAPPGYHLVGADVDSQELW 827

Query: 388  VL-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG                 +G DL+  T +              R   KV
Sbjct: 828  IAAVLGEAHFAGLHGCTAFGWMTLQGKKSSGTDLHSKTASTV---------GISREHAKV 878

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      + +    +   A    R    +      
Sbjct: 879  FNYGRIYGAG----QPFAERLLMQFNHRLTEQQASEKARQMYAATKGIRRCHLSEEGE-- 932

Query: 495  EDLFIGTACERVKKAWRQKHSRVS-ELWNELHQAFEQTIENGKAIIARKR---RDVPLVY 550
                     E      R ++  VS +   ++H+   +  +  K  + R+R          
Sbjct: 933  -----WLVKELGIPVDRAENGSVSLQDVRKIHREVGKRSQKKKWDVVRQRVWSNGTESEM 987

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
              K ++  +   P    L  R                +R           +VQ+ + D L
Sbjct: 988  FNKLESIAMSDSPCTPVLGCRISRALEPAAVKGEFVTSR--------VNWVVQSSAVDYL 1039

Query: 611  AEGMMNATKA--GYDI----VLTVHDEIVCETPDTDEFNASMLYHL 650
               ++        Y I     +++HDE+       D + A++   +
Sbjct: 1040 HLMLVAMKWLFEEYSIDGRFCISIHDEVRYLVQSEDRYRAALALQI 1085


>gi|147904034|ref|NP_001081464.1| DNA polymerase subunit gamma-1 [Xenopus laevis]
 gi|2494179|sp|Q91684|DPOG1_XENLA RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit
 gi|1229142|gb|AAB17117.1| DNA polymerase gamma [Xenopus laevis]
          Length = 1200

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 96/344 (27%), Gaps = 50/344 (14%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             L +   +     + +     + ++       +   +++ V    G  L+ AD+   E  
Sbjct: 810  ILAQVVSAGTITRRAVEPTWLTASNA--RADRVGSELKAMVQVPPGYHLIGADVDSQELW 867

Query: 388  VL-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG                 +G DL+  T +              R   KV
Sbjct: 868  IAAILGEAHFAGIHGCTAFGWMTLQGKKSSGTDLHSKTASTV---------GISREHAKV 918

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    Q  A    +  N      +     ++        R    +      
Sbjct: 919  FNYGRIYGAG----QPFAERLLMQFNHRLTQEQAAEKAKQMYAVTKGIRRYILSK----- 969

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK-RRDVPLVYMKK 553
            E  ++        +   +    + +L      A +++      +  R            K
Sbjct: 970  EGEWLVEELGISVERGEENSVNLQDLRKIQKDATKRSRRKWNLVSRRIWTGGTESQMFNK 1029

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
             +   +   P    L  R        L  T  +     +        +VQ+ + D L   
Sbjct: 1030 LETIAMSPSPKTPVLGCRISR----ALEPTAVKGEFITSR----VNWVVQSSAVDYL-HL 1080

Query: 614  MMNATK---AGYDI----VLTVHDEIVCETPDTDEFNASMLYHL 650
            M+ A K     YDI     +++HDE+       D + A++   +
Sbjct: 1081 MLVAMKWLFEAYDIDGRFCISIHDEVRYLVHSKDRYRAALALQI 1124


>gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
 gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
          Length = 204

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            LK+ L +  V  + H +
Sbjct: 22  IDTETMGLHPHRDRLCV--VQLSNGDGSADVVQIPQGATDAPNLKKLLGDPAVVKIFHFA 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIA 131
            F+   L   F  +  P++       L R+      L   V E L +   K ++  +   
Sbjct: 80  RFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDLVRELLGIDLSKQQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                       Y   DV     +  +L+ + ++E
Sbjct: 138 -----------------GADSLSDAQLAYAASDVLHLHALRDKLDTMLARE 171


>gi|312218970|emb|CBX98915.1| similar to DNA polymerase gamma [Leptosphaeria maculans]
          Length = 1168

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 65/219 (29%), Gaps = 32/219 (14%)

Query: 313 ASRTGRWSGCVF---PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
           AS +G+  G       PQ +P  + +   ++           S+      +   ++S V 
Sbjct: 654 ASASGKGRGKKVGFILPQIIPMGTITRRSVENT-----WLTASNAKK-NRVGSELKSMVR 707

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARS 416
           A EG   V AD+   E  + A + G+         A            G DL+  T    
Sbjct: 708 APEGYCFVGADVDSQELWI-ASLIGDATFKLHGGNAVGFMTLEGTKAAGTDLHSRTAG-I 765

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
             ++        R   KV      Y  G K    +       L     L   N   +  +
Sbjct: 766 LGIS--------RNAAKVFNYGRIYGAGLKFAATLLRQFNPTLTDEQTLKTANDLYQNTK 817

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             +   + + E        + F+    E   +  R +  
Sbjct: 818 GKKTVRKQLHERPFWRGGTESFVFNKLEDFAEQERPRTP 856


>gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 209

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 35/197 (17%)

Query: 12  SPIDLTKCGICKYAE------DVCVI----------LFAFGFDDHPVELWDCVHDPVMPQ 55
           S  DL+   + +Y E      D   +          L      +  V +           
Sbjct: 9   SDRDLSDAALGQYLESTAIAVDTETMGLLPQRDRLCLVQLCNLEGKVTVIRIAKGQTEAP 68

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGE 114
            LK+  E  +V  V H + F+   L+A   + + P+        LAR+      LK V  
Sbjct: 69  NLKKLFEAANVVKVFHFARFDIATLRANLGIQVSPVFCTKIASKLARTYTNRHGLKDV-- 126

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +L   ++++  +                    N          Y   DV     + ++
Sbjct: 127 VQELEKVELDKSSQSSDWG---------------NAVSLSEAQLSYAANDVRYLLSVQQK 171

Query: 175 LEPLSSKEQELWYLDQT 191
           L  +  +E E W + Q 
Sbjct: 172 LTEMLKRE-ERWKIAQE 187


>gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group]
 gi|113623082|dbj|BAF23027.1| Os08g0175600 [Oryza sativa Japonica Group]
          Length = 570

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 77/247 (31%), Gaps = 49/247 (19%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-- 99
           V++ D   D +M        E+  +  V HN  F+  V++ C    I +  +    +   
Sbjct: 326 VDVLDGGRDVLM--EFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLA 380

Query: 100 -----ARSNGLPSALKAVGEALKLSSQKMEE----GKELIA--RFCKGETHECLYDRN-- 146
                +R      +L+ +    ++ +  +++    GK  +      K         +   
Sbjct: 381 RLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTIS 440

Query: 147 ----KPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLSSKEQ---------------ELW 186
               K   RE   L+  Y   D   T ++++ L+  L +KE                E W
Sbjct: 441 IEPVKKLQREDRELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYW 500

Query: 187 ----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-----SSRCLE 237
                L   +   G  VD A    + +   VER     +               +     
Sbjct: 501 RPFGALLVKMETEGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDN 560

Query: 238 KLKTWLF 244
           +++   F
Sbjct: 561 QIRQLFF 567


>gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis]
 gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis]
          Length = 1461

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 22/85 (25%)

Query: 333  SRSHEELDQIITHLPTSITSD--------------PDPLQII-----SDCVRSCVIAS-- 371
             R H  L+ I T                       P+             VR    A   
Sbjct: 1378 HRVHCSLN-INTETGRLSARRHVCCEMRLHISAVVPNLQNQPALEKDRYKVRRAFTADTE 1436

Query: 372  EGKKLVVADLAGIEARVLAWMAGEQ 396
             G  LVVAD   +E R+LA M   Q
Sbjct: 1437 GGNTLVVADYGQLELRILAHMTNCQ 1461


>gi|47219815|emb|CAG03442.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1246

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 100/341 (29%), Gaps = 55/341 (16%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+   +     + +     + ++       +   +++ V    G  LV AD+   E  
Sbjct: 860  ILPQVITAGTVTRRAVEPTWLTASNA--RRDRVGSELKAMVQVPPGYHLVGADVDSQELW 917

Query: 388  VL-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG                  G DL+  T                R   KV
Sbjct: 918  IAAVLGEAHFAGMHGCTAFGWMTLQGKKSQGTDLHSRTA---------DAVGISREHAKV 968

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP-EHA 493
                  Y  G    Q  A    +  N      + +   ++        R    +   E  
Sbjct: 969  FNYGRIYGAG----QAFAERLLMQFNHRLSQTEADRKAKQMYSLTKGVRRYHLSEEGEWL 1024

Query: 494  IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD----VPLV 549
            +++L I    E       Q+  R++ L ++  +  +  +   +        D    +  +
Sbjct: 1025 VKELGIEVEREENGSVSLQELRRITRLASQCSRRKKWDLVEKRLWSGGTESDMFNKLESI 1084

Query: 550  YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                     +L     R+L  + VGN       T+R                VQ+ + D 
Sbjct: 1085 AHSAQPATPVLGCRISRALEPKAVGNEF----ITSR------------VNWAVQSSAVDY 1128

Query: 610  LAEGMMNATKAG--YDI----VLTVHDEIVCETPDTDEFNA 644
            L   ++        +DI     +++HDE+       D + A
Sbjct: 1129 LHLILVAMKWLCQEHDIDGRFCISIHDEVRYLVSSEDRYRA 1169


>gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099]
 gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099]
          Length = 206

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 51/166 (30%), Gaps = 4/166 (2%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + +   + L      D   ++            L   L N  VT + H  
Sbjct: 24  IDTETLGLNPHRD--RLCLVQISPGDGSADVIQIAPGQKKAPNLVSLLRNRSVTKLFHFG 81

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +   K ++  +  A
Sbjct: 82  RFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLKDICFELLGVGLSKAQQSSDWAA 141

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                E  E         HR    L G   +   T   +   R  P
Sbjct: 142 ETLSPEQLEYAASDVLYLHRLRDVLAGRLAREGRTKEADACFRFLP 187


>gi|170053309|ref|XP_001862614.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
            quinquefasciatus]
 gi|167873869|gb|EDS37252.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
            quinquefasciatus]
          Length = 1150

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 85/323 (26%), Gaps = 59/323 (18%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +P+         + +     + ++     + I   +R+ V A  G KLV AD+   E  
Sbjct: 745  IIPQVVVCGTLTRRAMEPTWMTASNA--QRERIGSELRAMVQAPRGFKLVGADVDSQELW 802

Query: 388  VLAWMAGEQW-------------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            + + +                           D++  T                R   KV
Sbjct: 803  IASVLGDGHAAAIHGATPLGWMTLSGTKAAKTDMHSVTAQAV---------GISRDHAKV 853

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +  A  Y  G    +++                       + DAE   + ++        
Sbjct: 854  INYARIYGAGQNFAERLLKQFN----------------PTFSDAEARSKAIKMFALTKGK 897

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR--RDVPLVYMK 552
            +  +       +K+ +R +         E  +  +   +    I  R R           
Sbjct: 898  KFYY-------LKEEFRDELPEKPYSAYEALKTAKICNKPVTEIFERARWEGGTESAMFN 950

Query: 553  KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---I 609
            + +       P    L  R          T  R       +       +VQ+ + D   +
Sbjct: 951  RLEEIADSPTPVTPFLGGRLSRALEPQEGTEDR-------FLPTRINWVVQSGAVDFLHL 1003

Query: 610  LAEGMMNATKAGYDIVLTVHDEI 632
            +   M           L+ HDE+
Sbjct: 1004 MLVAMRWLMGDRVRFCLSFHDEV 1026


>gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 58/185 (31%), Gaps = 23/185 (12%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET   +D    G+    + +CV+  A       V L            L   L + ++  
Sbjct: 24  ETLLAVDTETMGLIPQRDRLCVVQIANAA--GEVVLLRLSRGVKQAPHLARLLTDPNIEK 81

Query: 69  VAHNSYFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEG 126
           + H + F+  +L+    +   P+        LAR+     +L   VGE   +   K  + 
Sbjct: 82  IFHYARFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSKHSLKDVVGELCGVELNKTAQS 141

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
            +                   P          EY   DV     +  +L  +  +E E W
Sbjct: 142 SDW-----------GNVQALSPEQ-------LEYAANDVRYLIPVRHKLAQMLQRE-ERW 182

Query: 187 YLDQT 191
            L Q 
Sbjct: 183 ELAQR 187


>gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
 gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 206

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 25/172 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV+       D   ++            L + L++  +  + H +
Sbjct: 24  IDTETMGLKPHRDRLCVVQM--SPGDGSADVIQIARGQRDAPNLIKLLKDPAIVKIFHFA 81

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIAR 132
            F+   L   F   +      CT + +R                + +     G K+L+  
Sbjct: 82  RFDLAALYNAFG--VMPRPVYCTKIASRL---------------IRTYTDRHGLKDLVRE 124

Query: 133 F--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                    +   D   P   +A      Y   DV     +  +LE   ++E
Sbjct: 125 LLSIDLSKQQQSSDWGSPTLSDAQ---LAYAASDVLHLHALRDKLEATLARE 173


>gi|320162698|gb|EFW39597.1| DNA polymerase gamma [Capsaspora owczarzaki ATCC 30864]
          Length = 1596

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 25/147 (17%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +P+   +     + +     + ++       +   ++  V+A +G +LV AD+   E  
Sbjct: 914  IVPQVVSAGTITRRAVEPTWMTASNAKK--NRLGSELKIKVVAPQGYQLVGADVDSEELW 971

Query: 388  VLAWMAGEQ-----------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            + A + G+            W   A +   G D++  T A           K  R   K+
Sbjct: 972  IAA-LFGDARFGLHGATALGWMTLAGKKSDGTDMHSKTAATL---------KTDRDHAKI 1021

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNT 461
               A  Y  G    QK+      +L+ 
Sbjct: 1022 FNYARIYGAGMSYAQKLLKQFDASLSQ 1048


>gi|316931442|ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
 gi|315599156|gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
          Length = 211

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 24/176 (13%)

Query: 10  TRSP-IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           T S  ID    G+  + + +CV        D   ++            LK+ L +  V  
Sbjct: 24  THSVAIDTETMGLHPHRDRLCV--VQLSNGDGSADVVQIPLGATDAPNLKKLLGDPAVVK 81

Query: 69  VAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEG 126
           + H + F+   L   F  +  P++       L R+      L   V E L +   K ++ 
Sbjct: 82  IFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDLVRELLGIDLSKQQQS 141

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            +           E L D               Y   DV     +  +L+ + ++E
Sbjct: 142 SD--------WGAESLSDAQLA-----------YAASDVLHLHALRDKLDTMLARE 178


>gi|332142368|ref|YP_004428106.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552390|gb|AEA99108.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 289

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 100/296 (33%), Gaps = 35/296 (11%)

Query: 1   MATLFIDFETR--SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           M  + +D+ET   S  ++ K G   Y  D    ++  +   +      +      V+ + 
Sbjct: 1   MIDVTLDWETYFDSQYNIKKLGTMAYVRDPRFQILGASMKVEHEDTRWYTPNEIDVLVEE 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114
           LK    +  V ++  N+ F+  +L      +     +  T+ +A+       S L ++ +
Sbjct: 61  LKSLEASNGVRLIGQNTKFDGLILAE--KHNFIPSYYCDTMAMAKGLWPHHKSDLDSLTK 118

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L   + K +     +  F      +   D  +       ++  +Y   D  +T E FK+
Sbjct: 119 RL-FPNDKSKHKGTELESFKGKTYEDIEADGTE-------QILIQYGVQDSDITYESFKQ 170

Query: 175 LEPL-SSKEQELWYLDQTI-NDRGYCVDVALAHTLNQIVDVERTKLDQE----------- 221
           +E      E ++  +   +  D  + +D +L   +      E+  + Q            
Sbjct: 171 MEQWYPKPEMDIIDMTVRMFCDPVFVLDTSLMDRVAVEATKEKESVIQTAIDFVNSDEIK 230

Query: 222 LESLTYGLVSSSRCLEKLKT-----WLFLETGLHLE-DLTETTCQRVLSSNKKLTP 271
              L       +   +   +      L    G+ +    + TT ++  +  K   P
Sbjct: 231 ARRLMINGELQAISPKTFSSNKEFPLLLESLGMDIPMKKSPTTGKQTPALGKNDVP 286


>gi|315518941|dbj|BAJ51818.1| DNA polymerase-like protein [Ralstonia phage RSB2]
          Length = 701

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 47/242 (19%)

Query: 229 LVSSSRCLEKLKTWL---------FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +V +    + +   L         F ETGL    + E T      +  +     +++   
Sbjct: 309 VVFNPGSRQHIAKVLQERGWVPTEFTETGLP--KVDEETLAEAAENLPEQYRDDVKLIAE 366

Query: 280 RMRASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +   +    + + +     + + G + G++   GA  TGR +        +P  +    
Sbjct: 367 YLLLVKRLGQIAEGDNAWLKLCNKGFIHGSVNPNGAV-TGRATHAFPNLAQVPSGT---- 421

Query: 338 ELDQIITHLPTSITSDPDPLQIIS-DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--- 393
                           P    +   + +R  V+       V  D +G+E R L       
Sbjct: 422 ------------ALYGPQCRALFGVEHIRKTVVGWAAAVQVGTDASGLELRCLGHFMARF 469

Query: 394 GEQWKLKAFETGEDLY-----------VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +   ++    G D++             T  R       +     R   K    A  Y 
Sbjct: 470 DDGQYIRDILEG-DIHWVNVEALGLVPKGT-KRIKEGPGHEEHDKFRGYAKTFIYAFLYG 527

Query: 443 GG 444
            G
Sbjct: 528 AG 529


>gi|320586879|gb|EFW99542.1| DNA polymerase gamma [Grosmannia clavigera kw1407]
          Length = 1168

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 25/154 (16%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
               LP+         + + +   + ++       +   +++ V A  G   V AD+   
Sbjct: 664 QGFILPQVIPMGTVTRRAVENTWLTASNAKK--NRVGSELKAMVKAPPGYSFVGADVDSE 721

Query: 385 EARVLAWMAGEQW-------------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           E  + A + G+                      G DL+  T +    +         R  
Sbjct: 722 ELWI-ASVVGDATFGLHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RND 771

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            KV      Y  G +   ++      +L+    +
Sbjct: 772 AKVFNYGRIYGAGLRFAAQLLRQFNPSLSEAETV 805


>gi|262342193|gb|ACY54607.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G++ R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLKLRCLGHYLSRYDGGKFAEEVANG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                        +V    R  GK +   L   GG       A  +  + +     ++
Sbjct: 60  TALA---------EVYGTDRKSGKGVTYCLICGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|83313031|ref|YP_423295.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82947872|dbj|BAE52736.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 203

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 21/152 (13%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIH 91
                 D    +            L   L ++ VT + H + F+  +++    +   P+ 
Sbjct: 39  VQLSAGDGHAHVVHYPKPEWNSPNLVRMLADSKVTKLFHFARFDVAMIRRYLGVRCTPVF 98

Query: 92  RWICTLVLARSNGLPSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                  L R+N    +LK + +  L +   K+++  +                      
Sbjct: 99  CTKIASKLTRTNTEGHSLKVLCKEFLNIDLSKLQQSSDW-------------------GA 139

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            E       Y   DV    ++  RL+ L  +E
Sbjct: 140 PELTADQLAYAASDVLYLHQLKDRLDALLDRE 171


>gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 203

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 26/182 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +C++   F   +    L   V+       LK  L +     + H +
Sbjct: 22  IDTETMGLNLHRDKLCLL--QFSNGNGEAHLVHFVNQDYSAPNLKALLLDKTRCKIFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELI 130
            F+   +K   ++D+      CT + ++          LK +   L            L 
Sbjct: 80  RFDLAAIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL------------LS 125

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
               K +        N  + +       EY   DV    ++   L+ +  +E  L  L Q
Sbjct: 126 INISKQQQSSYWGTDNLSSEQ------KEYAAKDVLYLHQLKDILQKMLLRENRL-ELAQ 178

Query: 191 TI 192
            I
Sbjct: 179 DI 180


>gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
 gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
          Length = 204

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 24/176 (13%)

Query: 10  TRSP-IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           T S  ID    G+  + + +CV        D   ++            LK+ L +  +T 
Sbjct: 17  THSVAIDTETLGLNPHRDRLCV--VQLSNGDGSADVVQIPAGHTDAPNLKKLLGDPAITK 74

Query: 69  VAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEG 126
           + H + F+  VL   F  +  P++       L R+      L   V E L +   K ++ 
Sbjct: 75  LFHFARFDIAVLYHAFGVMAQPVYCTKIASKLVRTYTDRHGLKDLVREMLGVEISKQQQS 134

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                            D    +  EA      Y   DV     +  +L+ + ++E
Sbjct: 135 S----------------DWGAASLSEAQ---LSYAASDVLHLHALRDKLDAMLARE 171


>gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
 gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
          Length = 203

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 19/151 (12%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIH 91
             F   D    L            L   L + DV  + H + F+  VL+A   +   PI+
Sbjct: 39  VQFSSGDGTAHLVQFAPGEYDAPNLTRMLTDPDVLKLFHFARFDVAVLQAFLGVATAPIY 98

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                  L R+      LK +    +L    + + ++         T E L         
Sbjct: 99  CTKIASKLVRTYTDRHGLKDLCR--ELIGVDLSKQQQSSDWGAAELTAEQLA-------- 148

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                   Y   DV     +  RL+ + ++E
Sbjct: 149 --------YAASDVLHLHALKDRLDIMLARE 171


>gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 203

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 26/182 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +C++   F   +    L    +       LK  L +     + H +
Sbjct: 22  IDTETMGLNLHRDKLCLL--QFSNGNGEAHLVHFTNQDYTAPNLKALLLDKTRCKIFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELI 130
            F+   +K   ++D+      CT + ++          LK +   L            L 
Sbjct: 80  RFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL------------LN 125

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
               K +        N  + +       EY   DV    ++   L+ +  KE   + L Q
Sbjct: 126 INISKQQQSSYWGADNLSSEQ------KEYAAKDVLYLHQLKDILQKMLLKENR-YELAQ 178

Query: 191 TI 192
            I
Sbjct: 179 DI 180


>gi|302410881|ref|XP_003003274.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
 gi|261358298|gb|EEY20726.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
          Length = 963

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 61/203 (30%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++       +   +++ V A  G   V AD+   E
Sbjct: 585 PQIIPMGTIT----RRAVENTWLTASNA--KRNRVGSELKAMVKAPPGYSFVGADVDSQE 638

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T      +         R   
Sbjct: 639 LWI-ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIT--------RNDA 688

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K   ++      NL+    L   +      +  +   + + +     
Sbjct: 689 KVFNYGRIYGAGLKFAAQLLRQFDPNLSEKETLETASKLYVNTKGTKTNRKVLYKRPFWR 748

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 749 GGTESFVFNKLEEFAEQERPRTP 771


>gi|162147898|ref|YP_001602359.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 28/173 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + +   + L      D    L   +     P  L   + +  +T + H +
Sbjct: 28  VDTEAMGLNPHRD--RLCLVQISAGDGSAHLVQILPGTPSP-NLARLMADPSITKLMHFA 84

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLSSQKMEEGKEL 129
            F+  +L+    + +     ICT + ++          L  +  E L +   K       
Sbjct: 85  RFDVAILQHSLGVTVAP--VICTKIASKLVRTFTERHGLAQLCRELLGVDLSK------- 135

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                + +T +       P           Y   DV     ++ +LE L  +E
Sbjct: 136 -----QQQTSDWGAPELTPEQ-------KAYAASDVLHLHALWTKLEVLLHRE 176


>gi|145614196|ref|XP_364068.2| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
 gi|145021143|gb|EDK05272.1| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
          Length = 1103

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++       +   +++ V A  G   V AD+   E
Sbjct: 631 PQIIPMGTIT----RRAVENTWLTASNAKK--NRVGSELKAMVKAPPGYCFVGADVDSEE 684

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T +    +         R   
Sbjct: 685 LWI-ASVVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RNDA 734

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K   ++      NL+    +   +      + A+   + + +     
Sbjct: 735 KVFNYGRIYGAGLKFAGQLLRQFNPNLSEQETVETASKLYAATKGAKTNRKALYKRPFWR 794

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 795 GGTESFVFNKLEEFAEQERPRTP 817


>gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
 gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
          Length = 204

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            LK+ L +  V  + H +
Sbjct: 22  IDTETMGLHPHRDRLCV--VQLSNGDGSADVVQIPQGHSDAPNLKKLLGDPTVVKIFHFA 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIA 131
            F+   L   F  +  P++       L R+      L   V E L +   K ++  +   
Sbjct: 80  RFDLAALYNAFGVMPQPVYCTKIASRLTRTYTDRHGLKDLVRELLNVDLSKQQQSSD--- 136

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                   E L D               Y   DV     + ++L+ + ++E
Sbjct: 137 -----WGAETLSDAQLA-----------YAASDVLHLHGLREKLDAMLARE 171


>gi|116207922|ref|XP_001229770.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
 gi|88183851|gb|EAQ91319.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
          Length = 1082

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 61/204 (29%), Gaps = 30/204 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   +++ V A  G   V AD+   E
Sbjct: 681 PQIIPM----GTITRRAVENTWLTASNAKK--NRVGSELKAMVRAPPGYVFVGADVDSEE 734

Query: 386 ARVLAWMAGEQWKLK------------AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             + + +    +++                 G DL+  T +    +         R   K
Sbjct: 735 LWIASVIGDSTFRIHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RNDAK 785

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           +      Y  G K   ++      +L+    L          +  +   R + +      
Sbjct: 786 IFNYGRIYGAGLKFAAQLLRQFNPSLSETETLQIATKLYATTKGTKTNRRVLHKRTFWRG 845

Query: 494 IEDLFIGTACERVKKAWRQKHSRV 517
             + F+    E   +   Q+H R 
Sbjct: 846 GTESFVFNKLEEFAE---QEHPRT 866


>gi|332671808|ref|YP_004454816.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484]
 gi|332340846|gb|AEE47429.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484]
          Length = 567

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
             R   E            TS    LQ+ +    + V A +G +LVVAD A +E RVLA 
Sbjct: 294 DGRFRPEYVPGGVVSGRWATSGGGALQLPAAVR-AAVRADDGWRLVVADAAQLEPRVLAA 352

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           M+G+     A     DLY         V  A +    R+  K   L   Y     A   +
Sbjct: 353 MSGDGAMAAAGRQ-ADLYQ-------GVVDAGIVA-TRSDAKYAMLGAIYGATTGASAAL 403

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDA 478
                        LV+  +   E  +A
Sbjct: 404 MPQLTRAYPQAVALVEAAARAGERGEA 430


>gi|439149|gb|AAA64535.1| DNA polymerase [Bacillus phage SPO1]
          Length = 91

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 14/92 (15%)

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC----- 363
           +F  A+               P     H   +   T      +++P+  Q          
Sbjct: 1   EFRKANHLYNNFVSKLSLMIDPDN-IVHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPTL 59

Query: 364 ------VRSCVIA--SEGKKLVVADLAGIEAR 387
                 ++    +   +G  +V  D + +E R
Sbjct: 60  FQYNFEIKKMFNSRFGDGGVIVQFDYSQLELR 91


>gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
 gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
          Length = 207

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 21/179 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+    +   + L         V              LK+ +E   +  V H +
Sbjct: 27  VDTETMGLLPRRD--RLCLVQLCDPLGQVTAIRIHKGQQEAPNLKQLMEANSIVKVFHFA 84

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+  +L+    + + PI     +  LAR+      LK +   ++L   ++++  +    
Sbjct: 85  RFDVAMLQHYLGIKVSPIFCTKISSKLARTYTGKHGLKDL--VMELEKVELDKSSQ---- 138

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                + +     N             Y   DV     + ++L  +  +E E W L Q 
Sbjct: 139 -----SSDWGNAENLT------EKQLNYAANDVRYLLSVREKLSKILKRE-ERWELAQQ 185


>gi|225561715|gb|EEH09995.1| DNA polymerase gamma [Ajellomyces capsulatus G186AR]
          Length = 1146

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 60/211 (28%), Gaps = 25/211 (11%)

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
             +  +     LP+         + + +   + ++       +   +++ V A  G   V
Sbjct: 658 SSNSTLKQGYILPQIIPMGTITRRAVENTWLTASNA--KANRVGSELKAMVRAPPGYVFV 715

Query: 378 VADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQV 424
            AD+   E  + A + G+         A            G DL+  T      ++    
Sbjct: 716 GADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTA-NILGIS---- 769

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   KV      Y  G K    +      +++            EE +      + 
Sbjct: 770 ----RNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEQETKRVAAKLYEETKGTRTNRKI 825

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           + +N       + F+    E   +  R +  
Sbjct: 826 LSDNPFWRGGTESFVFNKLEEFAEQERPRTP 856


>gi|255595591|ref|XP_002536350.1| DNA polymerase I, putative [Ricinus communis]
 gi|223520014|gb|EEF26033.1| DNA polymerase I, putative [Ricinus communis]
          Length = 547

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 39/241 (16%)

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           ++ +   P S +E E + L Q            +A    +++++E   L     +L+   
Sbjct: 11  QMRETGMPWSQEEAENYVLAQW---------AKVAEHAAKLIEME-PSLAPFSAALSNPE 60

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
                 L+      F   G+ L+   ++   ++   +        +V    +  ++    
Sbjct: 61  AGIKADLKAAIGQAFSNRGIELQMTEKSGAFKIGEKD------LRRVKAAVVEDAKPFFE 114

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           +   L  A  + G  R   ++   S  GR           P                   
Sbjct: 115 EWVALNRAKKAGGMAREVSKYASRSYDGRL---------HPNTGH--------GPVTGRL 157

Query: 350 ITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
            +S+P+  Q   D   R+ V +  G K+V AD + ++ RV A  A     ++A     D 
Sbjct: 158 SSSEPNCQQFPRDPGFRAIVRSRPGFKIVSADYSALDMRVGAACA-----IRAQRQILDA 212

Query: 409 Y 409
           Y
Sbjct: 213 Y 213



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 603 QAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCETPDT--DEFNASMLYHLMTSN 654
           Q+   DIL   M    +       IV  VHDE++ E PD   DE+NA ++  +MT  
Sbjct: 467 QSTGADILGLVMQEFRQHPGVFKCIVNQVHDEVLFEIPDDKVDEYNA-VISRVMTDA 522


>gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246]
 gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246]
 gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 203

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 26/182 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +C++   F   +    L    +       +K  L +     + H +
Sbjct: 22  IDTETMGLNLHRDKLCLL--QFSNGNGEAHLVHFTNQDYTAPNVKALLLDKTRCKIFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELI 130
            F+   +K   ++D+      CT + ++          LK +   L            L 
Sbjct: 80  RFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL------------LN 125

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
               K +        N  + +       EY   DV    ++   L+ +  KE   + L Q
Sbjct: 126 INISKQQQSSYWGADNLSSEQ------KEYAAKDVLYLHQLKDILQKMLLKENR-YELAQ 178

Query: 191 TI 192
            I
Sbjct: 179 DI 180


>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 557

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 23/166 (13%)

Query: 15  DLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTI 68
           D    G   +  DV +  + F +   +       C       Q L +      ++     
Sbjct: 376 DTETTGTYAH--DVELVGLSFCYKTGEG--YYIPCPPSANETQALLQHFKPLFDDASKKW 431

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGK 127
           +  N  ++  VLK      + +       +LA     P   + +   + +    +    +
Sbjct: 432 IGQNVKYDLIVLKWY---GVLLAGQFFDTMLAHYLIEPEGRRGMDYLSAQYLQYEPVHIE 488

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           ELI +  K +                     EY   D  +T ++  
Sbjct: 489 ELIGKKGKNQ---------LTMKDVELEKIKEYAAEDADITLQLKN 525


>gi|195579078|ref|XP_002079389.1| GD22040 [Drosophila simulans]
 gi|194191398|gb|EDX04974.1| GD22040 [Drosophila simulans]
          Length = 1078

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 26/129 (20%)

Query: 330 PRPSRSHEELDQIITHLPTSIT-SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           P+         + +     + + S PD    +   +RS V A  G +LV AD+   E  +
Sbjct: 708 PQVVACGTLTRRAMEPTWMTASNSRPD---RLGSELRSMVQAPPGYRLVGADVDSQELWI 764

Query: 389 L-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                 A+  GE             +   G D++  T                R   KV+
Sbjct: 765 ASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVI 815

Query: 436 ELALGYQGG 444
             A  Y  G
Sbjct: 816 NYARIYGAG 824


>gi|262212309|gb|ACY35771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 354 PDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLY 409
           P+  Q+ S    RS    S+    V +D +G+E R L   ++        +    G D++
Sbjct: 1   PNLAQVPSAHEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG-DIH 59

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  +           R  G+ +   L Y GG       A  +  + +     ++
Sbjct: 60  TALA-EIYGTD--------RKSGEGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 108


>gi|291335384|gb|ADD94998.1| DNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
          Length = 217

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 27/179 (15%)

Query: 376 LVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           +V ADL+GIE R+LA      +  +       +D++     +             R   K
Sbjct: 1   MVGADLSGIELRMLAHYLARYDGGRYAKLLLEDDIHQINADKI---------GISRRQVK 51

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +  A  Y  G    +K+  +    L+T A   K       + DA +    + +   + A
Sbjct: 52  TVTYAFLYGAGD---EKIGHSYDPQLSTTAAKKKGKEIRAAYVDAVDGLDDLLKAIKQ-A 107

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
            E  FI +   R                +  H+A    +++G  +IA++   +    M+
Sbjct: 108 AERGFIRSIDGRKVNV------------DSPHKALNYCLQSGAGVIAKRWMVINQETMR 154


>gi|255713056|ref|XP_002552810.1| KLTH0D01980p [Lachancea thermotolerans]
 gi|238934190|emb|CAR22372.1| KLTH0D01980p [Lachancea thermotolerans]
          Length = 1223

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 93/342 (27%), Gaps = 91/342 (26%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP          + + +   + ++       I   +++ V A  G   V AD+   E  
Sbjct: 619 ILPSVIPMGTVTRRSVENTWLTASNAKK--NRIGSELKAQVQAPPGYVFVGADVDSEELW 676

Query: 388 VLAWMAGEQ-----------WKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A +  +            W     +   G D++  T          Q+    R   K+
Sbjct: 677 I-ASLVSDSVFNIHGGTPIGWMCLEGSKSEGTDMHTKTA---------QILGCSRNEAKI 726

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G K   ++       L  +                       +E   +   
Sbjct: 727 FNYGRIYGAGVKFATQLLKNFNPGLTDYEA---------------------KETAEKLYS 765

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
               +    +  KK W      +  L+N+L    EQ          R       +     
Sbjct: 766 STKGLVKRSKTFKKFWYSGSESI--LFNKLEHIAEQA-------APRTPVLGAGITSSLM 816

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILA 611
           K NL               G+N               T+        +Q+   D   +L 
Sbjct: 817 KGNL---------------GSN---------------TFLPSRINWAIQSSGVDYLHLLC 846

Query: 612 EGMMNATKAG---YDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             M    K       + L++HDEI   T + D++  +M   +
Sbjct: 847 CSMNYLIKKFSLRARLALSIHDEIRFLTAEKDKYKTAMALQI 888


>gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 209

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 21/179 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+    +   + L      +  V              LK+ LE T+V  V H +
Sbjct: 29  VDTETMGLLPQRD--RLCLIQLCNPEGKVTAIRIARGQTAAPNLKKLLEATNVLKVFHFA 86

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   L+   ++ + PI        LAR+      LK +    +L   ++++  +    
Sbjct: 87  RFDVATLRHHLDIHVQPIFCTKIASKLARTYTNRHGLKDL--VYELEQVELDKSAQ---- 140

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                + +     N  + +        Y   DV       ++L  +  +E E W L Q 
Sbjct: 141 -----SSDWGNAANLTDAQ------LSYAANDVRYLLSAQQKLVAMLKRE-ERWELAQQ 187


>gi|154283185|ref|XP_001542388.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
 gi|150410568|gb|EDN05956.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
          Length = 1126

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 61/211 (28%), Gaps = 25/211 (11%)

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
             +  +     LP+         + + +   + ++       +   +++ V A  G   V
Sbjct: 638 SSNSTLKQGYILPQIIPMGTITRRAVENTWLTASNA--KANRVGSELKAMVRAPPGYVFV 695

Query: 378 VADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQV 424
            AD+   E  + A + G+         A            G DL+  T      ++    
Sbjct: 696 GADVDSEELWI-ASLVGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTA-NILGIS---- 749

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   KV      Y  G K    +      +++         +  +E +      + 
Sbjct: 750 ----RNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEQETKRVAANLYKETKGTRTNRKI 805

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           + +N       + F+    E   +  R +  
Sbjct: 806 LSDNPFWRGGTESFVFNKLEEFAEQERPRTP 836


>gi|46201483|ref|ZP_00054962.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 203

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 21/152 (13%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIH 91
                 D    +            L   L +  VT + H + F+  +++    +   P+ 
Sbjct: 39  VQLSAGDGHAHVVHYPKPEWNSPNLVRMLADPKVTKLFHFARFDVAMIRKYLGVRCNPLF 98

Query: 92  RWICTLVLARSNGLPSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                  L R+N    +LK + +  L +   K+++  +                      
Sbjct: 99  CTKIASKLTRTNTEGHSLKVLCKEFLNIDLSKLQQSSDW-------------------GA 139

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            E       Y   DV    ++  RL+ L  +E
Sbjct: 140 PELNADQLAYAASDVLYLHQLKDRLDMLLDRE 171


>gi|167516798|ref|XP_001742740.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779364|gb|EDQ92978.1| predicted protein [Monosiga brevicollis MX1]
          Length = 632

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 44/173 (25%), Gaps = 11/173 (6%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           W          +    E  ++L      E  L  +   +   G  V +         +  
Sbjct: 259 WPSLLNMLWRRLKAELEQRQQLTLFERLEVPLTPVLVRMQVLGVGVALPQLVATQAALQH 318

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--------DLTETTCQRVLSS 265
               L QE   L  G   +    +++   LF    L               +T +  L  
Sbjct: 319 CLQSLTQEAAILA-GQSFNLDSAQQVANILFTHLQLGRNVPMLPMTASGKPSTGEETLRK 377

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            +   P    +   R    +  +      V  +  +G +       G    G+
Sbjct: 378 LQSKHPLPGLILRYRQL--KRCLSGYIEQVCPLVHEGTVHPRWHQPGLRERGK 428


>gi|213581474|ref|ZP_03363300.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 86

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
           Q  + DI+   M      + A +    +++ VHDE+V E    D +  A  ++ LM 
Sbjct: 7   QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLME 63


>gi|182677567|ref|YP_001831713.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633450|gb|ACB94224.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 204

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 23/173 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + +   + L      D    L            L+  L + +VT + H +
Sbjct: 22  VDTETLGLLPHRD--RLCLVQLSGGDGQAHLVQIKPGQTHAPHLERLLIDPNVTKLFHYA 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P++       L R+      LK +  E L +   K ++      
Sbjct: 80  RFDIAVLYKTFGTMTTPLYCTKIASKLTRTYTDRHGLKDLARELLGVDLSKQQQSS---- 135

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                       D       +A      Y   DV     +  +L+ +  +E  
Sbjct: 136 ------------DWGADTLSDAQLT---YAASDVLHLHALRTKLDGMLEREHR 173


>gi|156041228|ref|XP_001587600.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980]
 gi|154695976|gb|EDN95714.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1146

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 29/149 (19%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   ++S + A  G   V AD+   E
Sbjct: 675 PQVIPM----GTVTRRAVENTWLTASNAKK--NRVGSELKSMIKAPPGYCFVGADVDSEE 728

Query: 386 ARVLAWMAGEQ-------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+                      G DL+  T +    +         R   
Sbjct: 729 LWI-ASLVGDAQFKLHGGNAVGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RNDA 778

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNT 461
           KV      Y  G K    +      +L+ 
Sbjct: 779 KVFNYGRIYGAGLKFASTLLRQFNPSLSE 807


>gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 234

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD-IPI 90
           L    F+D    L    +D   P  L++ LE+ ++T + H + F+ ++++       +P 
Sbjct: 68  LVQLSFNDGNAHLVQLKNDYTAP-NLRKILEDKNITKIFHFARFDVSIIRYYLETWALPC 126

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           +       L R+     +LK +   L+L   K+           K +      + N  + 
Sbjct: 127 YCTKIASRLVRTYTDNHSLKELC--LELLDTKLN----------KQQQSSDWGNENLTDK 174

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +        Y   DV     I ++L+ +  +E
Sbjct: 175 Q------KSYAASDVLYLHRIKEKLDLMLERE 200


>gi|158345168|ref|YP_001522875.1| hypothetical protein PPLKA1_gp34 [Enterobacteria phage LKA1]
 gi|114796464|emb|CAK25002.1| hypothetical protein [Pseudomonas phage LKA1]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 31/195 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKY-------AEDVCVILFAFGFDDHP-VELWDC------VH 49
           L ID ET SPI+    G+ K         ++  ++ +   +   P V   D         
Sbjct: 91  LSIDIET-SPIEGRVWGLWKQNLGLNQITKEWNILSYCAKWLGDPNVIYSDLSQAENIAD 149

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIP-IHRWICTLVLARSNGL 105
           D  +   L E L   D+ +  +   F+   ++A F       P   R I T+++A+    
Sbjct: 150 DSKLVAELYELLNEADLVVAQNGKRFDLPKIQARFVMAGYKPPRPFRVIDTMLMAKQ--- 206

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKG 163
                     L+  + K+   K+      K E    +   N     + EAW     Y   
Sbjct: 207 --QFGFTSNKLEWMTDKLCTTKKR-----KHEKFPGMELWNQCLAGNPEAWEEMRLYNID 259

Query: 164 DVTVTREIFKRLEPL 178
           DV    E++  L P 
Sbjct: 260 DVISLEELYLILRPW 274


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 41/148 (27%)

Query: 11  RSPIDLTKCGI--CKY----------------AEDVCVILFAFGFDDHPVELWDCVHDPV 52
            + +D+   G+   ++                 E+   +L   G D  PV +        
Sbjct: 16  WTVVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTLLDP-GCDPGPVHIHGLT---- 70

Query: 53  MPQVLKEALENTDV-----------TIVAHNSYFERTVLKACFN---LDIPIHRWICTLV 98
            P+ L+ A     V            +VAHN+ F+   L   F    L +P+ + +CTL 
Sbjct: 71  -PERLRGAPTFDRVAERVAELLSGRVMVAHNAAFDYAFLAHEFGRAGLHLPVEQRLCTLA 129

Query: 99  LARSNGLP---SALKAVGEALKLSSQKM 123
           L R  GLP     L  +     +   + 
Sbjct: 130 LGRRIGLPTPDLRLSTLAAHYGVPQHRA 157


>gi|312381749|gb|EFR27423.1| hypothetical protein AND_05878 [Anopheles darlingi]
          Length = 1735

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 29/160 (18%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP+         +       + ++     + I   +R+ V A  G ++V AD+   E  
Sbjct: 936  ILPQVVVCGTLTRRASEPTWMTASNA--QRERIGSELRAMVQAPIGYRIVGADVDSQELW 993

Query: 388  VLAWMAGEQWKLK--AFETGE---------------DLYVTTYARSFNVAPAQVTKDQRA 430
            + + + G+       A   G                D++  T A              R 
Sbjct: 994  IASVL-GDAGVASCGALHGGTPFGWMTLSGTKATRTDMHSVTAAAV---------GISRD 1043

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              KV+  A  Y  G +  +++       ++      K   
Sbjct: 1044 HAKVINYARIYGAGQQFAERLLKQFNPTISQAEARSKATK 1083


>gi|301605305|ref|XP_002932281.1| PREDICTED: DNA polymerase subunit gamma-1-like [Xenopus (Silurana)
            tropicalis]
          Length = 1197

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 95/343 (27%), Gaps = 48/343 (13%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP    +     + +     + ++       +   +++ V    G  ++ AD+   E  
Sbjct: 807  ILPLVVSAGTITRRAVEPTWLTASNA--RADRVGSELKAMVQVPPGYHIIGADVDSQELW 864

Query: 388  VL-----AWMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +      A  AG                 TG DL+  T +              R   KV
Sbjct: 865  IAAILGEAHFAGIHGCTAFGWMTLQGKKSTGTDLHSKTASTV---------GISREHAKV 915

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                  Y  G    +++       L       K   A + +   +   R++     E  +
Sbjct: 916  FNYGRIYGAGQAFAERLLMQFNHRLTQEQAAEK---AKQMYAVTKGIRRYILSKEGEWLV 972

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            E+L I            Q   ++ +       + +   +                   K 
Sbjct: 973  EELGIPVERGEENSVSLQDLRKIQK-----EASAKSRRKWNLVSRRIWTGGTESQMFNKL 1027

Query: 555  KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
            +   +   P    L                   +R           +VQ+ + D L   M
Sbjct: 1028 ETIAMSPSPKTPVLGCHISRALEPAAVKGEFITSRINW--------VVQSSAVDYL-HLM 1078

Query: 615  MNATK---AGYDI----VLTVHDEIVCETPDTDEFNASMLYHL 650
            + A K     YDI     +++HDE+       D + A++   +
Sbjct: 1079 LVAMKWLFEAYDIDGRFCISIHDEVRYLVQSKDRYRAALALQI 1121


>gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 206

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  ++ D  + L    F+D    L    +D   P  L++ LE+ ++T + H +
Sbjct: 24  VDTEAMGL-LHSRD-RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKILEDKNITKIFHFA 80

Query: 74  YFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+ ++++       +P +       L R+     +LK +   L+L   K+         
Sbjct: 81  RFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC--LELLDTKLN-------- 130

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
             K +      + N  + +        Y   DV     I ++L+ +  +E
Sbjct: 131 --KQQQSSDWGNENLTDKQ------KSYAASDVLYLHRIKEKLDLMLERE 172


>gi|262212209|gb|ACY35721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 173

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 372 EGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            G+ +V AD +GIE R+L+      +  +        D++     +             R
Sbjct: 1   PGQVMVAADSSGIELRMLSHFPAKYDDGRYADILLNGDIHQVNADKI---------GISR 51

Query: 430 AIGKVMELALGYQGG 444
            + K +  A  Y  G
Sbjct: 52  KLVKTVTYAFLYGAG 66


>gi|189208179|ref|XP_001940423.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187976516|gb|EDU43142.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1526

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 32/218 (14%)

Query: 326  PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            PQ +P  + +   ++           S+      +   ++S V A +G   V AD+   E
Sbjct: 1040 PQIIPMGTITRRSVENT-----WLTASNAKK-NRVGSELKSMVRAPKGYCFVGADVDSQE 1093

Query: 386  ARVLAWMAGEQW-------------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              + A + G+                      G DL+  T A    ++        R   
Sbjct: 1094 LWI-ASLIGDATFQLHGGNAVGFMTLEGTKAAGTDLHSRTAA-ILGIS--------RNDA 1143

Query: 433  KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
            KV      Y  G K    +      +L        T +A + +++ +      ++ H   
Sbjct: 1144 KVFNYGRIYGAGLKFASTLLRQFNPSLTDAQT---TKTAEDLYKNTKGMKTNRKQLHERS 1200

Query: 493  AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                        +++    Q+  R   L   + +A ++
Sbjct: 1201 FWRGGTESFVFNKLEDFAEQERPRTPVLGAAITEALQR 1238


>gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
 gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
          Length = 1758

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 74/268 (27%), Gaps = 69/268 (25%)

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
             +   +AFE G D +  T    +      V                     K  +    
Sbjct: 2   KCRSMKEAFELGGDFHSRTAYGMYEYIQEAV---------------------KNGECYLE 40

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G        +    ++        NF     +     A++        +     W   
Sbjct: 41  WEGQGEPDKPLVKDKYASERRKAKVLNFSIAYGKTAHGLAVDFKTTKEEAQETVDKWYSD 100

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                  W E            + ++ R R                  LP+  S  +R  
Sbjct: 101 R------WEEFK---------VRTLLGRTRP-----------------LPNISSPDFRLS 128

Query: 574 G-NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           G +NR+ +NT  +    +      +  +  +A                G+ +++ +HDE+
Sbjct: 129 GHSNRAAINTPIQGSAADVAAAAMVAIHKSEA------------LRATGFKLLMQIHDEV 176

Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAK 659
           + E P     +A  L   LM +   WA+
Sbjct: 177 ILEGPRDRSEDAKRLVMELMANP--WAE 202


>gi|164655431|ref|XP_001728845.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
 gi|159102731|gb|EDP41631.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
          Length = 1518

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 100/342 (29%), Gaps = 81/342 (23%)

Query: 327  QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
              LP+         + I     + ++       I   ++S V AS G  +V AD+   E 
Sbjct: 912  MILPQVITMGTVTRRAIEKTWLTASNAKK--NRIGSELKSMVKASPGWSIVGADVDSEEL 969

Query: 387  RVLAWMAGEQ------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             + + M   Q                +   G DL+  T +     +        R   KV
Sbjct: 970  WICSVMGDAQFGIHGATAIGWMTLEGSKAQGTDLHSKTAS-ILGTS--------RDQAKV 1020

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
               +  Y  G +                  L+K N +    E +    +       ++  
Sbjct: 1021 FNYSRIYGAGIRH-------------AMQLLLKANPSMPVDEASRRAKQLYAATKGQNTR 1067

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
               + G      ++ W          +N+L +          +   R       +     
Sbjct: 1068 SQKYFG------RRFWYGGTESFV--FNKLEEIAL-------SEQPRTPALDCGITAALS 1112

Query: 555  KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
            K      LP  R    +D                    Y       +VQ+   D L   +
Sbjct: 1113 KQF----LPKTRGSAQQD--------------------YMPSRINWVVQSSGVDYLHLLI 1148

Query: 615  MNATK--AGYDI----VLTVHDEIVCETPDTDEFNASMLYHL 650
             + T     YDI    +L+VHDE+     D+D++ A++   +
Sbjct: 1149 TSMTHLCKTYDIEARFMLSVHDEVRYLARDSDKYRAALALQI 1190


>gi|326427333|gb|EGD72903.1| hypothetical protein PTSG_04632 [Salpingoeca sp. ATCC 50818]
          Length = 1060

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 95/312 (30%), Gaps = 65/312 (20%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP  +       +          S+P P   I   +++ V A  G K V AD+   E  
Sbjct: 714 ILPFITTMGTISRRAREST-WLTASNPKP-NRIGSELKAMVRAPPGCKFVGADVDSQELW 771

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           + A + G+            ++ +T      +  ++  K      K  E+   + GG+K 
Sbjct: 772 IAA-LLGDARFTG-------IHGSTALGWMTLQGSKKDKSD-MHTKTAEIVGCHTGGSKI 822

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
           F       G        L+   +   + ++A+     + +          + G +     
Sbjct: 823 F-NYGRIYGAGRPFAKGLIMQFNPTIKEDEAKTLANELYDKTKGQMTSLGYSGGSE---- 877

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                     SE++N+L +              RK    P +  +         L     
Sbjct: 878 ----------SEMFNQLEEIAN-----------RKVPKTPFLGFRLTAGLQPRYL----- 911

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYT-YGGKLTENIVQAVSRDILAEGMMNAT------KA 620
                            ++  ++ T Y       +VQ+ + D L   +++          
Sbjct: 912 ----------------AKKGRKKATDYLPTRINWVVQSSAVDYLHLMLVSMKYFITQYDM 955

Query: 621 GYDIVLTVHDEI 632
              + +T+HDE+
Sbjct: 956 KARLCITIHDEV 967


>gi|169614686|ref|XP_001800759.1| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
 gi|160702800|gb|EAT81884.2| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
          Length = 1130

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 60/203 (29%), Gaps = 29/203 (14%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   ++S V A +G   V AD+   E
Sbjct: 667 PQIIPM----GTVTRRSVENTWLTASNAKK--NRVGSELKSMVRAPKGYCFVGADVDSEE 720

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T      ++        R   
Sbjct: 721 LWI-ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIS--------RNDA 770

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV      Y  G K    +      +L         N   ++ +  +   + + E     
Sbjct: 771 KVFNYGRIYGAGLKFASTLLRQFNPSLTESQTSKTANDLYQDTKGKKTNRKMLHERPFWR 830

Query: 493 AIEDLFIGTACERVKKAWRQKHS 515
              + F+    E   +  R +  
Sbjct: 831 GGTESFVFNKLEDFAEQERPRTP 853


>gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
 gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002]
 gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
          Length = 207

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 56/196 (28%), Gaps = 20/196 (10%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  Y +   + L     D   V              LK  +E  ++T V H +
Sbjct: 27  IDTETMGLNPYRD--RLCLVQLCDDAGYVSAIRIAQGQTAAPNLKALMEAPEITKVFHFA 84

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            F+   L+  F ++           +A   G          +  L        K L+   
Sbjct: 85  RFDLAQLRHVFGIETRPF---FCTKIASKLGRTYT-----SSHGL--------KALVKEL 128

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--QELWYLDQT 191
              E  +     +  N         +Y   DV     + ++L  +  +E    L      
Sbjct: 129 MGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAMLQRENRWPLMEECLR 188

Query: 192 INDRGYCVDVALAHTL 207
                  +D+A    +
Sbjct: 189 CLPTFISLDLAFYDNV 204


>gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi]
 gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi]
          Length = 206

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD-IPI 90
           L    F+D    L    +D   P  L++ LE+ ++T + H + F+ ++++       +P 
Sbjct: 40  LVQLSFNDGNAHLVQLKNDYTAP-NLRKILEDKNITKIFHFARFDVSIIRYYLETWALPC 98

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           +       L R+     +LK +   L+L   K+           K +      + N  + 
Sbjct: 99  YCTKIASRLVRTYTDNHSLKELC--LELLDTKLN----------KQQQSSDWGNENLTDK 146

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +        Y   DV     I ++L+ +  +E
Sbjct: 147 Q------KSYAASDVLYLHRIKEKLDLMLERE 172


>gi|60219516|emb|CAI56770.1| hypothetical protein [Homo sapiens]
          Length = 2149

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 53/185 (28%), Gaps = 36/185 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E    Y    +   G     A   +   I+  +   ++ +   L  G   S    + +
Sbjct: 1904 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDDI 1962

Query: 240  KTWLFLETGLHLEDLTE---------------------------TTCQRVLSSNKKLTPQ 272
               LFLE  L      +                           +T + VL+  K L P 
Sbjct: 1963 AEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQLSTSKDVLNKLKALHPL 2022

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   R R + +    +  L      +      R+    Q   A  TGR +      Q
Sbjct: 2023 PGLILEWR-RITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 2079

Query: 328  NLPRP 332
            N+PR 
Sbjct: 2080 NVPRD 2084


>gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 214

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 32/178 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC------VHDPVMPQVLKEALENTDVT 67
           ID    G+  + +   + L      D    L               P  LK  L +  VT
Sbjct: 26  IDTETMGLNPHRD--RLCLVQLSAGDGEAHLVQIKPVSMGGRGYDCP-NLKALLTDDSVT 82

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR---SNGLPSALKAVGEALKLSSQKME 124
            + H + F+  VL+  FN+ IP    ICT + AR   +      L  +   L        
Sbjct: 83  KLMHFARFDVAVLQNAFNITIP--SVICTKIAARLVYTFTDRHGLAYLCRDL-------- 132

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            G E+       ++ +       P+          Y   DV     ++ +LE +  +E
Sbjct: 133 LGVEISKH---QQSSDWGAQTLTPDQ-------LRYAASDVLYLHALWDKLEAMLIRE 180


>gi|316967875|gb|EFV52241.1| putative ubiquitin--protein ligase [Trichinella spiralis]
          Length = 1284

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 22/100 (22%)

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW-------------KLKAFET 404
             I   +R  +IA +G   V AD+   E  + A  +                        
Sbjct: 773 DRIGSELRGLIIAPKGYCFVGADVDSQELWIAALFSDSYGVKIHGSTPISWILLKGDKSK 832

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           G D +  T                R+  K++     Y  G
Sbjct: 833 GTDQHSLTAKEM---------GVSRSQAKILNYGRIYGAG 863


>gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 205

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+        + L      +  V L            LK+ L +  +T + H +
Sbjct: 22  VDTETMGLV--CRRDRLCLVQMSGSNGNVHLVKFPSTEYQASNLKKILSDLSITKIFHFA 79

Query: 74  YFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+ T ++    +  IP +       LAR+      LK +  E L +   K+++  +   
Sbjct: 80  RFDITAIRYYLGIWAIPCYCTKIASKLARTYTDHHGLKELCNELLGIKLNKVQQSSDWGK 139

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                E                      Y   DV     +  +L+ +  +E
Sbjct: 140 EVLTSEQLN-------------------YAASDVIHLHALKSKLDAMLERE 171


>gi|150865746|ref|XP_001385083.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
 gi|149387002|gb|ABN67054.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
          Length = 1061

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 29/203 (14%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LPR         +   +   + ++       I   ++S + A  G   V AD+   E  
Sbjct: 645 ILPRLCTMGTITRRATENTWLTASNAKK--NRIGSELKSLIEAPPGYCFVGADVDSEELW 702

Query: 388 VLAWMAGEQ-----------WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W     +  E  DL+  T      ++        R   KV
Sbjct: 703 I-ASLVGDSMFKIHGGTALGWMNLEGDKHEKTDLHSKTA-EILGIS--------RGDAKV 752

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G K   ++       L+               +   +  ++++        
Sbjct: 753 FNYGRIYGAGVKFATRLLKQFNSKLSEAEAEETAKLLYARTKGEMSSSKYLKRRLYHGGT 812

Query: 495 EDLFIGTACERVKKAWRQKHSRV 517
           E +        ++    QK+ R 
Sbjct: 813 ESV----MFNALESIAYQKNPRT 831


>gi|29366719|ref|NP_813764.1| putative DNA polymerase [Pseudomonas phage gh-1]
 gi|29243578|gb|AAO73157.1|AF493143_18 putative DNA polymerase [Pseudomonas phage gh-1]
          Length = 709

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 63/246 (25%), Gaps = 33/246 (13%)

Query: 231 SSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +      +   L  + G       ++        VL   +   P+         +    
Sbjct: 322 FNPTSRPHIIKML-KKAGWEPSEFTDNGAPKVDDEVLEHVRVDDPEKQAAIELIQKRIGM 380

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                N  ++ +  DG + G++   GA  TGR +        +P                
Sbjct: 381 LAEGDNAWIKLVGEDGAMHGSINPNGA-GTGRATHAYPNMGQVP---------------- 423

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFET 404
             S T  P    +            E    V  D +G+E R L       ++ +      
Sbjct: 424 SASATYGPHCRALFGATHAKKRRGWEKVVQVGTDASGLELRCLGHYGAPFDEGRYADTVL 483

Query: 405 GEDLY--VTTYARSFNVAPAQVTKDQ----RAIGKVMELALGYQGG---AKAFQKMASTT 455
             D++      A            ++    R I K    A  Y  G     +F       
Sbjct: 484 NGDIHWVNGKAAGIIKFDERDKHNEEHERVRGIAKTFIYAFLYGAGDELVGSFVGGGKKE 543

Query: 456 GLNLNT 461
           G  L  
Sbjct: 544 GKALKK 549


>gi|170719039|ref|YP_001784196.1| hypothetical protein HSM_0864 [Haemophilus somnus 2336]
 gi|168827168|gb|ACA32539.1| conserved hypothetical protein [Haemophilus somnus 2336]
          Length = 212

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 36/166 (21%)

Query: 29  CVILFAFGFDD-HPV----ELWDCVHDPV-----MPQVLKEALENTDVTIVAHN------ 72
            +++     DD  PV    E W                L++ +      ++ HN      
Sbjct: 60  EIVVIGAAVDDTSPVLFYCEDWQLPDRETRILTQFNDWLRKHITKATPLMIGHNITKFDD 119

Query: 73  -SYFERTVLKACFNLDIPIHRWICTLV--LARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
              F+R+V+        P+   I   +   A   G   +L  + + L +  +   +G ++
Sbjct: 120 RFIFQRSVINRIKPCYTPLRHNIYDTMTEWAGY-GNTVSLDKLCKVLDIEQKGDIDGSKV 178

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 G+ +E                  +YC  DV   REI+KR+
Sbjct: 179 WQYIQDGKINE----------------VAQYCAKDVERVREIYKRM 208


>gi|110589136|gb|ABG77077.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 31/144 (21%)

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                      AR++  V  ++ ++      L LP  ++   R     R+ +N       
Sbjct: 22  VAAYMERTREQAREQGYVETLFGRR------LYLPDIKARGPRRSAAERTAINAPM---- 71

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT-DE 641
                         Q  + DI+   M+         +    +++ VHDE+V E  ++  E
Sbjct: 72  --------------QGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLE 117

Query: 642 FNASMLYHLMTSNPSWAKGLPLKA 665
                L   M S    A  L ++ 
Sbjct: 118 TACQHLRDCMESAAELAVPLLVEV 141


>gi|255070583|ref|XP_002507373.1| predicted protein [Micromonas sp. RCC299]
 gi|226522648|gb|ACO68631.1| predicted protein [Micromonas sp. RCC299]
          Length = 1659

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 596  KLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASM-LYHL 650
            +      Q  + D++   M+        +    VL +HDE++ E   +    A+  +  +
Sbjct: 1563 RAVNTACQGSAADVVKRAMIAVFDELDPSLATPVLQIHDELLFEVDASRVVEAARAVRAI 1622

Query: 651  MTSN 654
            M   
Sbjct: 1623 MERA 1626


>gi|46122277|ref|XP_385692.1| hypothetical protein FG05516.1 [Gibberella zeae PH-1]
          Length = 1124

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 32/198 (16%)

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           SA  ++ + +   + D R+       G++R         P   LP+         + + +
Sbjct: 614 SARDRIKSQMVVYDQDLRV-----MRGSTRGKP--KKDKPGFILPQIIPMGTITRRAVEN 666

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL----KA 401
              + ++       +   +++ V A  G   V AD+   E  + A + G+         A
Sbjct: 667 TWLTASNAKK--NRVGSELKAMVKAPRGYCFVGADVDSEELWI-ASLVGDATFKLHGGNA 723

Query: 402 F---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
                       G DL+  T +    +         R   K+      Y  G K    + 
Sbjct: 724 VGFMTLEGTKSAGTDLHSRTAS-ILGIT--------RNNAKIFNYGRIYGAGLKFAATLL 774

Query: 453 STTGLNLNTFAHLVKTNS 470
                NL+    +   + 
Sbjct: 775 RQFNPNLSEKQTMETASR 792


>gi|167946072|ref|ZP_02533146.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 31/144 (21%)

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                      AR++  V  ++ ++      L LP  ++   R     R+ +N       
Sbjct: 22  VAAYMERTREQAREQGYVETLFGRR------LYLPDIKARGPRRSAAERTAINAPM---- 71

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT-DE 641
                         Q  + DI+   M+         +    +++ VHDE+V E  ++  E
Sbjct: 72  --------------QGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLE 117

Query: 642 FNASMLYHLMTSNPSWAKGLPLKA 665
                L   M S    A  L ++ 
Sbjct: 118 TACQHLRDCMESAAELAVPLLVEV 141


>gi|296420113|ref|XP_002839625.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635808|emb|CAZ83816.1| unnamed protein product [Tuber melanosporum]
          Length = 1038

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 56/204 (27%), Gaps = 31/204 (15%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP+         + +     + ++       +   +++ VIA +G   V AD+   E  
Sbjct: 568 ILPQLIPMGTITRRAVERTWLTASNAKK--HRLGSELKAKVIAPQGYAFVGADVDSQELW 625

Query: 388 VLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+         A            G DL+  T      ++        R   KV
Sbjct: 626 I-ASLLGDAQFKIHGGNALGFMTLEGTKANGTDLHSKTA-NILGIS--------RDNAKV 675

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE--- 491
                 Y  G      +       +           A + +   +      +   P    
Sbjct: 676 FNYGRIYGAGVGFASTLLRAFNPAITDAK---CAKIAADLYSKTKGHQTLRKSLSPTRFW 732

Query: 492 HAIEDLFIGTACERVKKAWRQKHS 515
           H   + F+    E+     R +  
Sbjct: 733 HGGTESFVFNTLEKFADQERPRTP 756


>gi|311875216|emb|CBX44475.1| DNA polymerase A, part A [Erwinia phage phiEa1H]
 gi|311875337|emb|CBX45078.1| DNA polymerase A, part A [Erwinia phage phiEa100]
          Length = 621

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   IAS+GKK++  D AG+E RVLA    +    +    G D++         +    
Sbjct: 550 LRDLFIASKGKKVLGCDGAGLELRVLAHFMNDPEYSEVVLHG-DIHT-HNQEKAGLPLRD 607

Query: 424 VTK 426
           + K
Sbjct: 608 MAK 610


>gi|190345004|gb|EDK36807.2| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 25/151 (16%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP+         +   +   + ++       I   +++ + A +G   V AD+   E  
Sbjct: 641 ILPKLCSMGTITRRATENTWLTASN--SKSNRIGSELKAMIEAPQGYAFVGADVDSEELW 698

Query: 388 VLAWMAGEQ-------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+                      G DL+  T      ++        R   KV
Sbjct: 699 I-ASLVGDSMFKIHGGTALGWMTLEGDKNEGTDLHSKTA-EILGIS--------RNDAKV 748

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
                 Y  G K    +       L   A L
Sbjct: 749 FNYGRIYGAGVKFATTLLKQFNSELTDAAAL 779


>gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 203

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 26/182 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +C++   F   +    L    +       LK  L +     + H +
Sbjct: 22  IDTETMGLNLHRDKLCLL--QFSNGNGEAHLVHFENQNYTAPNLKALLSDKSRCKIFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELI 130
            F+   +K    +++      CT + ++          LK +   L            L 
Sbjct: 80  RFDLAAIKKYLEIEL--ENIFCTKISSKLVRTYTDSHGLKDLCREL------------LN 125

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
               K +        N  + +       EY   DV    ++   L+ +  KE   + L Q
Sbjct: 126 INISKQQQSSYWRADNLSSEQ------KEYAAKDVLYLHQLKDILQKMLLKENR-FELAQ 178

Query: 191 TI 192
            I
Sbjct: 179 DI 180


>gi|328789753|ref|XP_395230.4| PREDICTED: DNA polymerase subunit gamma-1, mitochondrial [Apis
            mellifera]
          Length = 1093

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 105/343 (30%), Gaps = 62/343 (18%)

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             LP  +       + +     + ++     + +   +R+ + A  G  +V AD+   E  
Sbjct: 710  ILPLVAVCGTLTRRAVEPTWMTASNSD--TERVGSELRAMIQAPPGYNIVGADVDSQEL- 766

Query: 388  VLAWMA---GEQ--------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
               W++   G+                 +       D++  T                R 
Sbjct: 767  ---WISSIIGDAYYKKIHGATPFGWMTLIGTKANETDMHSVTAKAI---------GISRN 814

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K++  A  Y  G K  + +      ++      +K+                      
Sbjct: 815  QAKIINYARIYGAGQKFAETLLKQFNPSMTDSEATLKSRKMF------------------ 856

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                  +  G    ++K  +   ++   +L++  ++A++ +  +GK I           +
Sbjct: 857  -----TMTKGKKIYKLKPEYINNNNDYDKLYSS-YEAYKLSKLHGKIIS---EMFEKNKW 907

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD-- 608
            +   ++ +   L       +       S L         +  +       +VQ+ + D  
Sbjct: 908  VGGSESAMFNRLEEIACNPHPVTPFLNSRLTVALESSVNDEKFLPTKINWVVQSGAVDFL 967

Query: 609  -ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             ++   M    K      L+ HDE+    P   ++NA++  H+
Sbjct: 968  HLMLVSMKWLMKDHARFCLSFHDEVRYLVPSKYKYNAALAMHI 1010


>gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
 gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
          Length = 178

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 21/143 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGI-------CKYAEDVCVIL-----FAFG-FDDHPVELWDC 47
           M  + +DFET S    + C +        + A++   ++     F +     H +   D 
Sbjct: 1   MNFIAMDFETASGKRYSACSLALTIVRNNQIADEFYTLINPQTPFFWRNVQIHGIHERDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
            + P  P+V    +     D  ++AHN+ F+  VLK     + ++ P ++ + T+V +R 
Sbjct: 61  ANAPTFPEVWEHIKGFYTPDKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTVVSSRR 120

Query: 103 NGLPSA---LKAVGEALKLSSQK 122
                +   L  V  AL +    
Sbjct: 121 LLPGLSNYKLNTVCAALNIDLHH 143


>gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
 gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
          Length = 223

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 25/180 (13%)

Query: 9   ETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
           ET S +  D    G+  + + +CV        D   ++            L     +   
Sbjct: 34  ETASAVAVDSETLGLNPHRDRLCV--VQLSPGDGSADVVQIARGQTEAPNLAALFTDAAK 91

Query: 67  TIVAHNSYFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKME 124
             + H + F+  VL+    +   P+        L R+      LK +  E L +   K +
Sbjct: 92  PKIFHFARFDVAVLRHYLGIHVTPVWCTKIASKLVRTYTDRHGLKDITRELLGVELSKQQ 151

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           +  +  A        E L D               Y   DV    ++  +LE +  +E+ 
Sbjct: 152 QSSDWAA--------ETLSDAQLA-----------YAASDVLHLHDLKAKLEMMLEREER 192


>gi|146423193|ref|XP_001487528.1| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 25/151 (16%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP+         +   +   + ++       I   +++ + A +G   V AD+   E  
Sbjct: 641 ILPKLCSMGTITRRATENTWLTASN--SKSNRIGSELKAMIEAPQGYAFVGADVDSEELW 698

Query: 388 VLAWMAGEQ-------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+                      G DL+  T          ++    R   KV
Sbjct: 699 I-ASLVGDSMFKIHGGTALGWMTLEGDKNEGTDLHSKTA---------EILGILRNDAKV 748

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
                 Y  G K    +       L   A L
Sbjct: 749 FNYGRIYGAGVKFATTLLKQFNSELTDAAAL 779


>gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
 gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
          Length = 206

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 48/151 (31%), Gaps = 4/151 (2%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L   L N  +T + H  
Sbjct: 24  IDTETLGLNPHRDRLCV--VQISPGDGSADVIQIAPGQKKAPNLVSLLRNRGITKLFHYG 81

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +   K ++  +  A
Sbjct: 82  RFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLKDICFELLGVGLSKAQQSSDWAA 141

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                E  E         HR    L G   +
Sbjct: 142 EILSPEQLEYAASDVLYLHRLRDVLSGRLAR 172


>gi|260939924|ref|XP_002614262.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
 gi|238852156|gb|EEQ41620.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
          Length = 930

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 60/216 (27%), Gaps = 29/216 (13%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP+         +   +   + ++       I   ++S + A +G   V AD+   E  
Sbjct: 335 ILPKLCTMGTITRRATENTWLTASN--SKANRIGSELKSLIEAPKGYVFVGADVDSEELW 392

Query: 388 VLAWMAGEQ-------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+                        DL+  T           +    R   KV
Sbjct: 393 I-ASLIGDSMFKIHGGTALGWMTLEGDKNQKTDLHSKTA---------DIMGISRNDAKV 442

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G K   ++      NL+            E+ +   +  +  +        
Sbjct: 443 FNYGRIYGAGVKFATRLLKQCNANLSDAEAERLAKELYEKTKGLASHSKIFKRRVYHGGS 502

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           E +        ++    Q+H R   L   +  A  Q
Sbjct: 503 ESV----MFNALEAIAYQEHPRTPVLGASITDALTQ 534


>gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110]
 gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110]
          Length = 204

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 51/173 (29%), Gaps = 27/173 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            LK  L N  +T + H +
Sbjct: 22  IDTETMGLNPHRDRLCV--VQLSPGDGSADVVQIPKGHTDAPNLKALLANPAITKIFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR----SNGLPSALKAVGEALKLSSQKMEEGKEL 129
            F+  VL   F +        CT + +R              V E L +   K ++  + 
Sbjct: 80  RFDVAVLYQSFGVMTGP--IYCTKIASRLTRTYTDRHGLKDLVREVLNVDLSKQQQSSDW 137

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                         Y   DV     + +RL+ +  +E
Sbjct: 138 -------------------GSDSLTEPQLAYAASDVLHLHALRERLDAMLVRE 171


>gi|225420465|ref|ZP_03762768.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
 gi|225040896|gb|EEG51142.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
          Length = 110

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651
            + +Q  + D++   M+   +          IVL +HDE++ ET  ++ E   ++L   M
Sbjct: 27  NSPIQGTAADVMKIAMIRVDRELKKRNMKSRIVLQIHDELLVETERSEVEAVKALLEEQM 86


>gi|332709748|ref|ZP_08429707.1| ribonuclease D [Lyngbya majuscula 3L]
 gi|332351575|gb|EGJ31156.1| ribonuclease D [Lyngbya majuscula 3L]
          Length = 216

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 21/179 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  Y  D  + L         V              LK+ LE T+V  V H +
Sbjct: 36  VDTETMGL-IYQRD-RLCLVQLCDPQGRVTFVRIDKGQTEAPRLKQLLEATNVLKVFHFA 93

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+  +L+    +D+ P+        LAR+      LK + + L           E I  
Sbjct: 94  RFDVAMLRQNLGIDVNPVFCTKIASKLARTYTSSHGLKELVKEL-----------ERIDL 142

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
               ++ +     N  + +       EY   DV     + ++L  +  +E + W L Q 
Sbjct: 143 DKSAQSSDWGNVANLSDQQ------LEYAANDVRYLLNVRQKLINMLERE-DRWELAQQ 194


>gi|260827865|ref|XP_002608884.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
 gi|229294238|gb|EEN64894.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
          Length = 196

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYH 649
           +    +VQ  + DI    M+   K   +      +++ +HDE+V E  D +  +   +  
Sbjct: 101 QAVNFVVQGSAADICKLAMILVGKRLAEEGLKAKLLIQLHDELVFEVADEEVDSVKGVVR 160

Query: 650 -LM 651
            +M
Sbjct: 161 DIM 163


>gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
 gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
          Length = 204

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 26/184 (14%)

Query: 7   DFETRSP---IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           D    +    ID    G+  + + +CV        D   ++            LK  L N
Sbjct: 12  DLSRYTSSVAIDTETMGLNPHRDRLCV--VQLSPGDGSADVVQIPKGHTDAPNLKALLAN 69

Query: 64  TDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQ 121
             +T + H + F+   L   F  +  P++       LAR+      L   V E L +   
Sbjct: 70  PAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDLVRELLNVDLS 129

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K ++                  D    N  E       Y   DV     + ++L+ + ++
Sbjct: 130 KQQQSS----------------DWGADNLSEPQ---LAYAASDVLHLHALREKLDVMLAR 170

Query: 182 EQEL 185
           E  L
Sbjct: 171 EGRL 174


>gi|195437646|ref|XP_002066751.1| GK24652 [Drosophila willistoni]
 gi|194162836|gb|EDW77737.1| GK24652 [Drosophila willistoni]
          Length = 1162

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 80/319 (25%), Gaps = 53/319 (16%)

Query: 330  PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            P+         + +     + ++       +   +R+ V A  G +LV AD+   E  + 
Sbjct: 777  PQVVACGTLTRRAMEPTWMTASN--SRADRLGSELRAMVQAPPGYRLVGADVDSQELWIA 834

Query: 390  AWMA-----GEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            + +      GE                   D++  T                R   KV+ 
Sbjct: 835  SVLGDAYAWGEHGATPLGWMTLSGNKSNQSDMHSITAKAV---------GISRDHAKVIN 885

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             A  Y  G +  + +        +      K           +   R   E H E     
Sbjct: 886  YARIYGAGQQFAENLLQQFNPTFSASEAKAKAMKMFS-ITKGKRIYRLRDEFHDELEDRP 944

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                 A     +  R           +     E  + N    IA + +        +   
Sbjct: 945  YSGYEATRLAVQRNRPISEVFHRSSWQ--GGTESAMFNRLEEIATEAQPKTPFLGCRLSR 1002

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEG 613
             L                   +  +   R       +       +VQ+ + D   ++   
Sbjct: 1003 AL----------------EADTGADQEQR-------FLPTRINWVVQSGAVDFLHLMLVS 1039

Query: 614  MMNATKAGYDIVLTVHDEI 632
            M     +     L+ HDE+
Sbjct: 1040 MRWLMGSHARFCLSFHDEL 1058


>gi|322709296|gb|EFZ00872.1| DNA polymerase gamma [Metarhizium anisopliae ARSEF 23]
          Length = 1090

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 29/165 (17%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           +++   S     PQ +P  + +     + + +   + ++       +   +++ V A +G
Sbjct: 604 TKSKADSYGFILPQVIPMGTIT----RRAVENTWLTASNAKK--NRVGSELKAMVKAPKG 657

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVA 420
              V AD+   E  + A + G+         A            G DL+  T      + 
Sbjct: 658 YCFVGADVDSEELWI-ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIT 715

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
                   R   KV      Y  G K    +      +L+    +
Sbjct: 716 --------RNDAKVFNYGRIYGAGLKFAATLLRQFNPSLSERQTM 752


>gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 206

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  ++ D  + L    F+D    L    +D   P  L++ LE+ ++T + H +
Sbjct: 24  VDTEAMGL-LHSRD-RLCLVQLSFNDGNAHLVQFKNDYTAP-NLRKILEDKNITKIFHFA 80

Query: 74  YFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+ +++        +P +       L R+     +LK +   L+L   K+         
Sbjct: 81  RFDVSIIHYYLQTWALPCYCTKIASRLVRTYTDNHSLKELC--LELLDIKLN-------- 130

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
             K +      + N  + +        Y   DV    +I ++L+ +  +E
Sbjct: 131 --KQQQSSDWGNENLTDKQ------KSYAASDVLYLHKIKEKLDLMLERE 172


>gi|154299492|ref|XP_001550165.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
 gi|150857350|gb|EDN32542.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
          Length = 1122

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 29/151 (19%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   ++S + A  G   V AD+   E
Sbjct: 657 PQIIPM----GTVTRRAVENTWLTASNA--KPNRVGSELKSMIKAPPGYCFVGADVDSEE 710

Query: 386 ARVLAWMAGEQ-------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+                      G DL+  T      +         R   
Sbjct: 711 LWI-ASLVGDAQFKLHGGNAVGFMTLEGTKAAGTDLHSRTAG-ILGIT--------RNDA 760

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           KV      Y  G K    +      +L    
Sbjct: 761 KVFNYGRIYGAGLKFASTLLRQFNPSLTEAE 791


>gi|256084395|ref|XP_002578415.1| DNA polymerase gamma [Schistosoma mansoni]
 gi|238663787|emb|CAZ34653.1| DNA polymerase gamma, putative [Schistosoma mansoni]
          Length = 870

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 65/214 (30%), Gaps = 44/214 (20%)

Query: 284 SRSAVLKLNTLVEAMNS--DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD- 340
           + +  +KL  ++   +     R+  T     + R         P   LP+   + +  + 
Sbjct: 450 ANTDTIKLKPVMGLADRLLHDRVHATFWQSYSKRIKSQMAIWLPHDQLPKNVLNDQSYNC 509

Query: 341 ---------QIIT-HLPTSITSDPDPL-------QIISDCVRSCVIASEGKKLVVADLAG 383
                    Q+IT    +    +P  L         +   +++ V +  G   V AD+  
Sbjct: 510 KANYGAILPQVITCGTVSRRAVEPLWLTASNADENRLGSEIKAMVQSPPGYVFVGADVDS 569

Query: 384 IEARVLAWMAGEQ-----------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRA 430
            E  + A + G+            W         G DL+                  +R+
Sbjct: 570 QEMWIAA-LIGDAGVGFQGSTPYGWMTLQGNKLDGTDLHTKIAKEM---------GIKRS 619

Query: 431 IGKVMELALGYQGGA-KAFQKMASTTGLNLNTFA 463
             KV+  +  Y  G   A   +A    + +   +
Sbjct: 620 ESKVLNYSRLYGSGIEFASHLLAKFCNITVKQAS 653


>gi|225022624|ref|ZP_03711816.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944532|gb|EEG25741.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 893

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 20/69 (28%)

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  VD+              T+ +    ++           ++L+  LF   
Sbjct: 476 ILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVLFETL 535

Query: 248 GLHLEDLTE 256
           GL      +
Sbjct: 536 GLPKTKKNQ 544


>gi|215509404|gb|EEC18857.1| DNA polymerase gamma, putative [Ixodes scapularis]
          Length = 1055

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 24/188 (12%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LPR   +     + +     + ++       +   ++S V A +G  +V AD+   E  
Sbjct: 691 ILPRLIPAGTVTRRAVEPTWLTASNA--YKDRVGSELKSMVQAPKGYHIVGADVDSQELW 748

Query: 388 VL-----AWMAGEQ------WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           +      A  A         W         G D++  T                R   KV
Sbjct: 749 IASILADAHFAEMHGCTAIGWMTLQGNKAVGTDMHSRTATSV---------GISRDQAKV 799

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +  A  Y  G    Q++       L+      K      + +        + E       
Sbjct: 800 INYARIYGAGQPFAQRLLMQFNHRLDAQEASTKAKKMYAQTKGVRVAVPEVVEGQQVFVR 859

Query: 495 EDLFIGTA 502
               +   
Sbjct: 860 GKRKVWEG 867


>gi|262342185|gb|ACY54603.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 188

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAW-MAGEQW--KLKAFETGEDLYVTTYARSFNVAP 421
           RS    S+    + +  +G+E R L   ++        +    G D++       +    
Sbjct: 10  RSLFKPSDNHLQIGSGASGLELRCLGHYLSRYDGGKLAEEVVNG-DIHTALA-EIYGTD- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                  R  GK +   L Y GG       A  +  + +     ++
Sbjct: 67  -------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIR 105


>gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 203

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 29/186 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D      +D    G+  + + +C++   F   +    L   ++       LK  L 
Sbjct: 15  KLEGDI----AVDTETMGLNIHRDKLCLL--QFSNGNGAAHLVHFINQDYTAPNLKALLL 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           +     + H + F+   +K   ++D+      CT + ++          LK +   L   
Sbjct: 69  DKTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +        N    +       EY   DV    ++   L+ + 
Sbjct: 124 ---------LNINISKQQQSSYWGTDNLSLEQ------KEYAAKDVLYLHQLKDILQKML 168

Query: 180 SKEQEL 185
            +E  L
Sbjct: 169 FRENRL 174


>gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 209

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 21/179 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + +   + L         V              LK+ +EN     V H +
Sbjct: 29  VDTETMGLIPHRD--RLCLVQLCDPTGYVTAIRIAKGQKEAPKLKQLMENNHSIKVFHFA 86

Query: 74  YFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   L+    ++  PI        LAR+    S+       L+L   ++++       
Sbjct: 87  RFDVAQLRHHLGIETTPIFCTKIASKLART--YTSSHGLKSLVLELEGIELDK------- 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                T +     N  N  E       Y   DV     + ++L  +  +E + W L Q 
Sbjct: 138 -----TAQSSDWGNAANLSEEQ---LSYAANDVRYLLGLKQKLITMLQRE-DRWQLAQD 187


>gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 206

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 23/154 (14%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L      D    L            LK  L +  V  + H + F+  +L+      +   
Sbjct: 39  LVQLSTGDGTAHLVRFNGTDYSAPRLKSLLVDPAVIKIFHFARFDIAILRHYLG--VLTE 96

Query: 92  RWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              CT + +R         +LK +   L L   ++ +GK+         T E +      
Sbjct: 97  NCYCTKIASRLVRTYTDHHSLKELC--LDLLGVRLNKGKQSSDWGSTSLTREQM------ 148

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                      Y   DV     I + L+ +  +E
Sbjct: 149 ----------SYAASDVLYLHAIKEALDVMLKRE 172


>gi|316934310|ref|YP_004109292.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
 gi|315602024|gb|ADU44559.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
          Length = 694

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 33/207 (15%)

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRS 286
            +    + +   L  E G   ++ TE+   +V    L       PQA ++    +   R 
Sbjct: 291 FNPSSRKHIIKKL-KEMGWEPQEFTESGEAKVDDDVLEGLTDTFPQASKLVEYLLLDKRL 349

Query: 287 AVL--KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQII 343
             L    N  ++ ++ DG++ G +  +G   + R S        +P   S    E   + 
Sbjct: 350 GQLADGDNAWLKKVHDDGKMHGAMDTMGTVHS-RASHFSPNMGQVPAAKSPYGAECRALF 408

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGK-----KLVVADLAGIEARVLAWMAG--EQ 396
                     P+ +            A  G        V AD++G++ R LA +    + 
Sbjct: 409 G---------PNGIDT--------HTAGWGGEKEEIVQVGADMSGLQLRALAHLLHPLDG 451

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQ 423
                  T  D++ +       V P +
Sbjct: 452 GAYSDIVTSGDVHWSHTQAMGLVGPEE 478



 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 24/188 (12%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
                +PQ L E L+  D  I      ++  VL+      +   +   + ++A+      
Sbjct: 36  FGPDQIPQAL-ELLDKADEGIAHFGLGYDFLVLEKLHGFKL--KKATDSFIIAKLMRP-- 90

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-KPNHR--EAWRLFG----EY 160
           + K    AL      ++ G+       K       Y    +  H   E W  F     E 
Sbjct: 91  SQKDADTAL------VKAGRLPGKLHGKHSIEAWGYRLGVQKLHADIEDWSEFTPEMQER 144

Query: 161 CKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           C+ DV V   ++  L+P          E  +  L + +   G   D   A  L+  +  +
Sbjct: 145 CESDVDVQDALWDWLKPDAYSQRAIELEHRIARLCRRMEAAGVWFDQEAAQKLHVALLGK 204

Query: 215 RTKLDQEL 222
           +  +  +L
Sbjct: 205 QEHIANDL 212


>gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 161

 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 15/133 (11%)

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120
           + +   V  N  ++ +VL       I +       +L     +   S       A K   
Sbjct: 1   DPEQKKVGQNLKYDMSVLARY---GIELRGIAFDTMLESYVLDSTASRHDMDSLAKKYLH 57

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 +++  +  K  T + +                 Y   D  +T  + + L P   
Sbjct: 58  YDTIHFEDVAGKGKKQLTFDQI----------PLESAAPYAAEDADITLRLHQTLWPRLQ 107

Query: 181 KEQELWYLDQTIN 193
            E  L  L   + 
Sbjct: 108 AEPTLASLTTDLE 120


>gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E]
 gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii]
 gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 203

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 56/175 (32%), Gaps = 25/175 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + + +C++   F   +    L   ++       LK  L +     + H +
Sbjct: 22  VDTETMGLNIHRDKLCLL--QFSNGNGEAHLVHFINQDYTAPNLKMLLLDKTRCKIFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELI 130
            F+   +K   ++D+      CT + ++          LK +   L            L 
Sbjct: 80  RFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL------------LN 125

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
               K +        +    +       EY   DV    ++   L+ +  +E  L
Sbjct: 126 INISKQQQSSYWGTDHLSLEQ------KEYAAKDVLYLHQLKDILQKMLLRENRL 174


>gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
 gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
          Length = 218

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 56/178 (31%), Gaps = 32/178 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQVLKEALENTDVT 67
           +D    G+    +   + L      D+   L   V           P  LK  LE+  VT
Sbjct: 31  VDTETMGLDPRRD--RLCLVQLSAGDNSAHLVQIVPPALGGRGADCP-NLKRLLEHPGVT 87

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKME 124
            + H + F+  +L     +       ICT + ++          LK +   L        
Sbjct: 88  KLFHFARFDLAMLHHALGVTTAP--VICTKIASKLVRTYTDRHGLKDLCRDLV------- 138

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            G E+     + +T +       P           Y   DV     I+ RLE L  +E
Sbjct: 139 -GIEISK---QQQTSDWGSAELSPEQ-------CAYAASDVLHLHAIWARLEALLVRE 185


>gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
 gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
          Length = 217

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 34/182 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQVLKEALENTDVT 67
           ID    G+    +   + L      D        +           P  LK  L   DV 
Sbjct: 31  IDTETMGLDPRRD--RLCLVQLSAGDGNAHCVQIIPESLGGRGADCP-NLKALLTRPDVV 87

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLSSQKM 123
            + H + F+  +L+A   ++       CT + A+          LK +  E L +   K 
Sbjct: 88  KLFHFARFDVAILRAALGIECAP--VRCTKIAAKLVRTFTDRHGLKDLCRELLGVEISKQ 145

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           ++  +                       E       Y   DV     ++ +LE L  +E 
Sbjct: 146 QQSSDW-------------------GAPELTPEQLAYAASDVLHLHALWAKLEGLLRREG 186

Query: 184 EL 185
            L
Sbjct: 187 RL 188


>gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 206

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 23/174 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  Y + +CV        D   ++            L + LE+  +T + H  
Sbjct: 24  VDTETLGLQPYRDRLCV--VQLSSGDGTADIIQIAKGQNSAPNLVKLLEDKAITKIFHFG 81

Query: 74  YFERTVLKACFNLDIP-IHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  +L   F +    +        L R+      LK +  E L ++  K ++  +   
Sbjct: 82  RFDLAILAHTFGIMPDVVFCTKIASKLTRTYTDRHGLKEICSELLNVNISKQQQSSDWA- 140

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
                 T                    EY   DV     +    E    +E+  
Sbjct: 141 ------TETLSR------------AQIEYAASDVLYLHRLKSVFETRLKREERE 176


>gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 452

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 15/132 (11%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL 109
             +P+ LK  LE+  V  VA N  ++  ++K      I    +  T++++        A 
Sbjct: 321 DALPR-LKALLEDAAVLKVAQNLKYDYLLMKRY---GIETKSFDDTMLISYVLDAGTGAH 376

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                + K         K++                N             Y   D  VT 
Sbjct: 377 GMDPLSEKFLGHTPIPYKDVA----------GSGRANVTFDLVDIDRATHYAAEDADVTL 426

Query: 170 EIFKRLEPLSSK 181
            ++  L+P  + 
Sbjct: 427 RLWLVLKPRLAA 438


>gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476]
 gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 206

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 8/123 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L + LE+  VT + H  
Sbjct: 24  IDTETLGLQPHRDRLCV--VQISPGDGTADIIQIAKGQKNAPNLVKLLEDNAVTKIFHFG 81

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLSSQKMEEGKEL 129
            F+  +L   F   +      CT + ++          LK +  E L ++  K ++  + 
Sbjct: 82  RFDLAILAHTFG--VMPEAVFCTKIASKLTRTYTDRHGLKEICNELLNVNISKQQQSSDW 139

Query: 130 IAR 132
            A 
Sbjct: 140 AAE 142


>gi|330868873|gb|EGH03582.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 198

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G++  L+ +  G DLY       F          +R   K + L+  Y    +  
Sbjct: 1   MAALSGDEKLLELYADG-DLYKQVANDIFEGE------GRRKEAKRLFLSYAYGMKNRHL 53

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEW 475
              A   G +        K     EEW
Sbjct: 54  IDAAFGYGADRRATKTFFKQFGKFEEW 80


>gi|269975269|gb|ACZ55493.1| putative DNA polymerase [Staphylococcus phage SA1]
          Length = 910

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 56/422 (13%), Positives = 113/422 (26%), Gaps = 71/422 (16%)

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
             LTE++   +     +   +      +R R   ++       +  +  DGRL       
Sbjct: 508 PKLTESSYDTIEGELGQKIAKYY-TLMHRRRTIENSKDDEKGWLNQIRPDGRLSA----- 561

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           GA   G  +G +                          I + P    +    +R      
Sbjct: 562 GAMVFGTSTGRMTQ----------------------YGIVNVPSGAAVYGAPMREVWTCE 599

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA--------- 422
           +G  ++  D    +  +L    G++   KA   G++      +  F              
Sbjct: 600 DGTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKE------SVEFTKQEDGRYYCKHLD 653

Query: 423 -----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN-------TFAHLVKTNS 470
                +  K  R   +     +     A     +        +           L+   +
Sbjct: 654 KYLNPETDKYLRYDAENDLYEVYTGTDAHTLNSIYFGLNKEEDIVRCRETQDEELLHEIT 713

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV-KKAWRQKHSRVSELWNELHQAFE 529
              +      +         + A       T    + K+ +  +  ++ +L + L + F+
Sbjct: 714 KGRKKSKNGIYALLFGAGDEKFAKTIKASSTEEGALTKQTYFVRLPKIKKLLDRLEEDFK 773

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
            T +  + +  +        Y+K     L    P  + L Y  +G+     N       R
Sbjct: 774 ATKKALEEVFGKTSAIAKGGYIKVAGAWLWCKSP-HKLLNYTLMGSEAQVQNEGINLANR 832

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
           E T       N                    G   V + HDE+  E P  D  +   +  
Sbjct: 833 ELTERKLTVLN--------------GRKPAIGARWVCSYHDEVSLEVPTKDVPDVKEIID 878

Query: 650 LM 651
            M
Sbjct: 879 RM 880


>gi|294084811|ref|YP_003551571.1| 3'- 5' exonuclease family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664386|gb|ADE39487.1| 3'- 5' exonuclease family protein, putative [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 203

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 23/179 (12%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           ID  +   ID    G+    +   + L      D    L           VL   L +  
Sbjct: 14  IDLGSIVAIDTETMGLK--TQRDRLCLVQLSSGDGNAHLVQIAQPAKPSPVLAALLADPA 71

Query: 66  VTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKM 123
           VT + H + F+   L      ++  I+       LAR+      LK +  E L++   K 
Sbjct: 72  VTKLFHFARFDLAALIHYIGAVEGDIYCTKIASKLARTYTDRHGLKELCRELLQIDISKQ 131

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           ++  +  A     +                      Y  GDV     I ++L  +  +E
Sbjct: 132 QQSSDWGAETLTIDQQN-------------------YAAGDVLYLHAIREKLSYMLERE 171


>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 75/282 (26%), Gaps = 68/282 (24%)

Query: 37  FDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           F D    LW         + +V K   E+  +  V HN  F++ VL       I    + 
Sbjct: 669 FGDGKNRLWIDVLDGGEDVLKVFKRYFESPSIKKVWHNYSFDKHVLGRH---GIHPQGFH 725

Query: 95  CTLVLARSNGLPSALKAVG----EALKLSSQKME--------------EGKELIARF--- 133
              +        +   A G    E L    + M+               GK+ +      
Sbjct: 726 ADTIHLARLYDSARRGAKGGYSLEVLSADEKVMDGYIRHSTEVDESVLAGKKSMKELFGK 785

Query: 134 --CKGETHECLYDRNKPNH--------REAWRLFGEYCKGDVTVTREIFKRLE------P 177
              K +          P H        R+AW  +  +   D   T  +F  L+      P
Sbjct: 786 ANLKKDGTPGKIKTIPPVHELQRDEELRDAWIYYSTF---DAVCTWRLFLSLQQKLSSTP 842

Query: 178 LS-----------SKEQELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            +              ++ W     +   +   G  VD     T+ ++   ++       
Sbjct: 843 WNVADLKKKGSMYDFYEKYWRPFGEVLVQMEADGMLVDCNHLATVEKVAKAQQEISVSRF 902

Query: 223 ES-----LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
                         +     +++ +L+   G       +   
Sbjct: 903 RKWAAKYCADAAQMNVGSDAQIRQFLY---GGTANRKDKDQV 941


>gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1]
 gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1]
          Length = 206

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 8/123 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + + +CV        D   ++            L   L + D+T + H  
Sbjct: 24  VDTETLGLQPHRDRLCV--VQLSSGDGTADVIQIAKGQKSAPNLVRLLSDRDITKIFHFG 81

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR----SNGLPSALKAVGEALKLSSQKMEEGKEL 129
            F+  +L   F   +      CT + ++            +  GE L ++  K ++  + 
Sbjct: 82  RFDLAILAHTFG--VMPDVVFCTKIASKLTRTYTDRHGLKEICGELLNVNISKQQQSSDW 139

Query: 130 IAR 132
            A 
Sbjct: 140 AAE 142


>gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 206

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 48/151 (31%), Gaps = 4/151 (2%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L   L N  VT + H  
Sbjct: 24  IDTETLGLNPHRDRLCV--VQISPGDGSADVIQIAPGQKKAPNLVSLLRNRGVTKLFHYG 81

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +   K ++  +  A
Sbjct: 82  RFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLKDICFELLGVGLSKAQQSSDWAA 141

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                E  E         HR    L G   +
Sbjct: 142 ETLSPEQLEYAASDVLYLHRLRDVLAGRLAR 172


>gi|294658573|ref|XP_460911.2| DEHA2F12628p [Debaryomyces hansenii CBS767]
 gi|202953230|emb|CAG89264.2| DEHA2F12628p [Debaryomyces hansenii]
          Length = 1342

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 56/184 (30%), Gaps = 25/184 (13%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LP+         +   +   + ++       I   +++ + A EG   V AD+   E  
Sbjct: 681 ILPKLCSMGTITRRATENTWLTASN--SKKNRIGSELKAMIEAPEGYTFVGADVDSEELW 738

Query: 388 VLAWMAGEQ-----------WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W     +  E  DL+  T      ++        R   KV
Sbjct: 739 I-ASLVGDSMFEMHGSTALGWMTLEGDKSEKTDLHSKTA-EILGIS--------RNDAKV 788

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G K   ++      +L+     +   +   + +   N  +++         
Sbjct: 789 FNYGRIYGAGVKFATRLLKQCNSSLSDVEAELMAKTLYAKTKGQTNTSKFLDRRMYHGGT 848

Query: 495 EDLF 498
           E + 
Sbjct: 849 ESIM 852


>gi|322699619|gb|EFY91379.1| DNA polymerase gamma [Metarhizium acridum CQMa 102]
          Length = 1090

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 29/153 (18%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +     + + +   + ++       +   +++ V A +G   V AD+   E
Sbjct: 616 PQVIPMGTIT----RRAVENTWLTASNAKK--NRVGSELKAMVKAPKGYCFVGADVDSEE 669

Query: 386 ARVLAWMAGEQWKL----KAF---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+         A            G DL+  T      +         R   
Sbjct: 670 LWI-ASLVGDATFKIHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIT--------RNDA 719

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           KV      Y  G K    +      +L+    +
Sbjct: 720 KVFNYGRIYGAGLKFAATLLRQFNPSLSERQTM 752


>gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3]
 gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3]
          Length = 178

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 21/143 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGI-------CKYAEDVCVIL-----FAFG-FDDHPVELWDC 47
           M  + +DFET S    + C +        + A++   ++     F +     H +   D 
Sbjct: 1   MNFIAMDFETASAKRYSACSLALTIVRDNQIADEFYTLINPQTPFFWRNVQIHGIHERDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
              P  P+V    +     +  ++AHN+ F+  VLK     + ++ P ++ + T+V +R 
Sbjct: 61  ADAPTFPEVWEHIKGFYTPEKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTVVSSRR 120

Query: 103 NGLPSA---LKAVGEALKLSSQK 122
                +   L  V +AL +    
Sbjct: 121 LLPGLSNYKLNTVCDALNIDLHH 143


>gi|149236109|ref|XP_001523932.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452308|gb|EDK46564.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
          Length = 975

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 25/195 (12%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            LPR +       +   +   + ++       I   +++ + A +G   V AD+   E  
Sbjct: 587 ILPRLASMGTITRRATENTWLTASNAKK--NKIGSELKTLIEAPKGYCFVGADVDSEELW 644

Query: 388 VLAWMAGEQ-----------WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W     E  +  DL+  T +    ++        R   KV
Sbjct: 645 I-ASLVGDSIFGLHGGSALGWMTLEGEKSQKTDLHSKTAS-ILGIS--------RNDAKV 694

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G K    +      +L+               +      + ++ N      
Sbjct: 695 FNYGRIYGAGLKFATTLLKQFNPSLSEKEAEDTAKKLYASTKGKIRGSKSVKSNKFYSGG 754

Query: 495 EDLFIGTACERVKKA 509
            +  +  A E + + 
Sbjct: 755 SESVMFNALEAIAQQ 769


>gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 204

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 26/181 (14%)

Query: 7   DFETRSP---IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           D    +    ID    G+  + + +CV        D   ++            LK+ L +
Sbjct: 12  DLSRYTDSVAIDTETMGLNPHRDRLCV--VQLSNGDGSADVVQIPVGHSDAPNLKKLLGD 69

Query: 64  TDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQ 121
             +T + H + F+   L      +  P++       L R+      L   V E L +   
Sbjct: 70  PAITKIFHFARFDLAALYNALGVMPQPVYCTKIASRLTRTYTDRHGLKDLVREVLGVDLS 129

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K ++  +           + L D               Y   DV     +  RL+ + ++
Sbjct: 130 KQQQSSD--------WGAQSLSDAQLA-----------YAASDVLHLHGLRTRLDAMLAR 170

Query: 182 E 182
           E
Sbjct: 171 E 171


>gi|254571647|ref|XP_002492933.1| DNA polymerase gamma [Pichia pastoris GS115]
 gi|238032731|emb|CAY70754.1| DNA polymerase gamma [Pichia pastoris GS115]
 gi|328353057|emb|CCA39455.1| DNA polymerase gamma 1 [Pichia pastoris CBS 7435]
          Length = 1012

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 29/157 (18%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   ++S + A +G   V AD+   E
Sbjct: 615 PQIIPM----GTITRRAVENTWLTASNAKK--NRLGSELKSLIEAPKGYCFVGADVDSEE 668

Query: 386 ARVLAWMAGEQ-------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+                      G DL+  T  +   ++        R   
Sbjct: 669 LWI-ASLIGDSVFKIHGGTAIGWMTLEGTKNEGTDLHSKTA-KILGIS--------RNEA 718

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           K+      Y  G K    +       L+        N
Sbjct: 719 KIFNYGRIYGAGIKFTTTLLKKFNPALSDAEAKATAN 755


>gi|2494181|sp|Q01941|DPOG_PICPA RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|1236527|gb|AAB17118.1| DNA polymerase gamma [Pichia pastoris]
          Length = 1012

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 29/157 (18%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P          + + +   + ++       +   ++S + A +G   V AD+   E
Sbjct: 615 PQIIPM----GTITRRAVENTWLTASNAKK--NRLGSELKSLIEAPKGYCFVGADVDSEE 668

Query: 386 ARVLAWMAGEQ-------------WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + A + G+                      G DL+  T  +   ++        R   
Sbjct: 669 LWI-ASLIGDSVFKIHGGTAIGWMTLEGTKNEGTDLHSKTA-KILGIS--------RNEA 718

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           K+      Y  G K    +       L+        N
Sbjct: 719 KIFNYGRIYGAGIKFTTTLLKKFNPALSDAEAKATAN 755


>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
           15444]
 gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 232

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 52  VMPQVLKEALE-NTDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLA--RSNG 104
             P ++   LE   D  IVAHN+ F+R  L      C    IP  RW+ T+ +A  R  G
Sbjct: 75  EHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWVDTVQMARKRYPG 134

Query: 105 LPSALKAVGE 114
            P++L A+ +
Sbjct: 135 APASLDALCK 144


>gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
 gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
          Length = 648

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 31/139 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-----GFDDHPVELWDCVHDPVMPQV 56
            TL++D E              Y  +  + L          +++ V + D +  P + Q 
Sbjct: 21  KTLWLDTEI----------ADWYTPNPRLSLIQILTNPKNIEENNVYVLDVLDKPDLIQD 70

Query: 57  LKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
                ++N  +  V HN+ F+             +    CTL +A+  G          +
Sbjct: 71  FINQIMKNPQIEKVFHNASFDI----KYLGGKEEVKNVTCTLKIAKKIGK--------HS 118

Query: 116 LKLSSQKMEEGKELIARFC 134
           L + + K+   K L    C
Sbjct: 119 LNVPNLKL---KTLAEYLC 134


>gi|71019835|ref|XP_760148.1| hypothetical protein UM04001.1 [Ustilago maydis 521]
 gi|46099778|gb|EAK85011.1| hypothetical protein UM04001.1 [Ustilago maydis 521]
          Length = 2098

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 115/400 (28%), Gaps = 82/400 (20%)

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF----LGASRTGRWSGCVFPPQN 328
            A        + S    ++     + +  DG+   T+++     GA +  +          
Sbjct: 1026 ARTALELNAQCSYWIAVRDRVHKQMVVWDGQADTTMRYPSGASGARQDKQGEADRKKGLI 1085

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            LP+         + I +   + ++       +   +++ V A  G  LV AD+   E  +
Sbjct: 1086 LPQVVSMGTVTRRAIENTWLTASNAKK--NRVGSELKAMVKAPPGYSLVGADVDSEELWI 1143

Query: 389  LAWMAGEQ----------WK-LKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             + M   Q          W  L+  +  G DL+  T +     +        R   KV  
Sbjct: 1144 CSVMGDAQFGIHGATAVGWMTLEGTKALGTDLHSKTAS-ILGTS--------RNQAKVFN 1194

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             +  Y  G K    +             L+K N +    E  +           ++   D
Sbjct: 1195 YSRIYGAGIKHATHL-------------LLKANPSVSNEEATQKAKELYMATKGQNTHTD 1241

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
             F G       K W          +N+L            A+       +          
Sbjct: 1242 EFFGA------KFWFGGTESYV--FNKLESIALSDNPKTPALDCGVTNALT--------- 1284

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                     + L   D GN R               Y       +VQ+   D L   +  
Sbjct: 1285 --------KKFLGKVDFGNGRLSEE-----------YMPSRINWVVQSSGVDYLHLLITA 1325

Query: 617  AT--KAGYDI----VLTVHDEIVCETPDTDEFNASMLYHL 650
                   Y I    +L+VHDE+     D D + A++   +
Sbjct: 1326 MEWLSKRYSIDARFMLSVHDEVRYLVKDQDTYRAALALQI 1365


>gi|305662963|ref|YP_003859251.1| replicative DNA polymerase I [Ignisphaera aggregans DSM 17230]
 gi|304377532|gb|ADM27371.1| replicative DNA polymerase I [Ignisphaera aggregans DSM 17230]
          Length = 801

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 88/272 (32%), Gaps = 38/272 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           +  L  D E  +P  + K       +D  +I+  +  D       +   +    + L ++
Sbjct: 179 LRVLAFDIEVYNPRGIPKA-----NKDPIIIISLYNSDGE---YIEFTANDKDDRNLIKS 230

Query: 61  L------ENTDVTIVAHNSY-FERTVL---KACFNLDIPIHRWICTLVLARSNG---LPS 107
                   + D+  V +NS  F+   L        + + + R          +G   +P 
Sbjct: 231 FIDYVLKYDPDII-VGYNSNRFDWPYLIERSRFLGIKLDVSRRRGVEPSPSVHGHISVPG 289

Query: 108 AL--KAVGEALKLSSQKMEEGKELIARF----CKGETHECLYDRNKPNHREAWR-LFGEY 160
            L       A ++S  K++   E+            T+   Y+  +    E  R +   Y
Sbjct: 290 RLNVDLYDFAEEMSEIKIKSLDEVAEYLGVMKKSERTNVPWYEIYRYWDDEKLRPILLRY 349

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + D   T  I +++ P         +  Q  +  G  +D     ++   ++    ++  
Sbjct: 350 ARDDAISTYGIAEKILP---------FAIQLSSVTGIPLDQVGTASVGFRLEWFLIRIAY 400

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
             + L    +       +    L  + G+H +
Sbjct: 401 MRDELVPNRIEREYEPYRGAIVLEPKKGVHED 432


>gi|50556422|ref|XP_505619.1| YALI0F19404p [Yarrowia lipolytica]
 gi|49651489|emb|CAG78428.1| YALI0F19404p [Yarrowia lipolytica]
          Length = 1046

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 25/150 (16%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +PR         + + +   + ++       I   ++S + A  G   V AD+   E  
Sbjct: 652 IIPRIIPMGTITRRCVENTWLTASNAKK--NRIGSELKSMIKAPPGYSFVGADVDSEELW 709

Query: 388 VLAWMAGEQ-----------WK-LKAFE-TGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W  L+  +  G DL+  T +    ++        R   K+
Sbjct: 710 I-ASLYGDSCFKNHGSTAIGWMTLEGTKSEGTDLHSKTAS-ILGIS--------RNEAKI 759

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAH 464
                 Y  G K  + +      N+     
Sbjct: 760 FNYGRIYGAGLKFAEALLKQFSPNVTDAEA 789


>gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
 gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
          Length = 206

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 59/185 (31%), Gaps = 28/185 (15%)

Query: 7   DFETRSP-----IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           D    S      +D    G+  + + +CV        D   ++       +    L+   
Sbjct: 12  DLSNYSSADAVAVDTETLGLNPHRDRLCV--VQLSSGDGSADVVQIERGQLAAPNLQALF 69

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG-EALKLS 119
           E+     + H + F+  +LK   ++ + P+        L R+      LK +  E + + 
Sbjct: 70  EDASKPKIFHFARFDVAILKEYLDISVSPVWCTKIASKLVRTYTDRHGLKDICRELIGVD 129

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +  A                            Y   DV    ++ +RLE + 
Sbjct: 130 LSKQQQSSDWAAEKLT-------------------DAQLAYAASDVLHLHKLKERLEFML 170

Query: 180 SKEQE 184
            +E+ 
Sbjct: 171 EREER 175


>gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
 gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
          Length = 209

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 21/179 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+    +   + L      +  V              L++ LE+T V  V H +
Sbjct: 29  VDTETMGLVPQRD--RLCLVQLCNPEGKVTAVRIAKGQTHAPNLQQLLESTHVVKVFHFA 86

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   L+    + + P+        LAR+      LK +    +L   +++        
Sbjct: 87  RFDLATLRHNLKIYVQPVFCTKIASKLARTYTNRHGLKEL--VQELEQLELD-------- 136

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                      D   P      +L   Y   DV     + ++L  +  +E E W L Q 
Sbjct: 137 -----KSSQSSDWGNPVSLSDAQLS--YAANDVRYLLSLKQKLSQMLQRE-ERWQLVQE 187


>gi|288964713|gb|ADC79470.1| hypothetical protein [Staphylococcus aureus]
          Length = 369

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 22/235 (9%)

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
            L    +    + +  +  L P   ++ +    +   +   +K   L +A N +      
Sbjct: 50  ELLSNEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEH----- 104

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                + +       +    N    +R + +L  I T      T   + +Q +   V+  
Sbjct: 105 -----SDKIEHLFDRLDQSLN--GTNRLYTQLSLIGTRTHRITTKRFN-VQGLPKLVQQT 156

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           ++ S+ KK+   D    E  V A+M  ++  +      E LY         +    ++K+
Sbjct: 157 ILPSQFKKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDA------LLRDLSLSKE 210

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGL-NLNTFAHLVKTNSAPEEWEDAENF 481
           +R   K   +     GG  +  K      +  +N    + K     E  E  E +
Sbjct: 211 KRVSVKRAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKVIEFKEQVEKY 265


>gi|304320833|ref|YP_003854476.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
 gi|303299735|gb|ADM09334.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
          Length = 204

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+    + +CV        D    L            LK  L +  +  + H +
Sbjct: 22  VDSETLGLNPLRDRLCV--VQLSAGDGDAHLVTFDAGAYDAPHLKAVLSDPQLLKIFHFA 79

Query: 74  YFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  V K    +D  PI+       LAR+      LK V  E   +   K ++  +  A
Sbjct: 80  RFDVAVFKHWLGVDTTPIYCTKIASKLARTYTDRHGLKDVVREMTGVELSKQQQSSDWAA 139

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                               E       Y   DV     + + L+ +  +E
Sbjct: 140 -------------------AELTEAQRAYAASDVLHLHAVREGLDRMIDRE 171


>gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 203

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 25/175 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +C++   F   +    L   V+       LK  L +     + H +
Sbjct: 22  IDTETMGLNLHRDKLCLL--QFSNGNGEAHLVHFVNQDYTAPNLKALLLDKTRCKIFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELI 130
            F+   +K   ++D+      CT + ++          LK +   L            L 
Sbjct: 80  RFDLASIKQYLSIDL--ENIFCTKISSKLVRTYTDNHGLKDLCREL------------LN 125

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
               K +        N  + +       EY   DV    ++   L+ +  +E  L
Sbjct: 126 INISKQQQSSYWGTDNLSSEQ------KEYAAKDVLYLHQLKDMLQKMLLRENRL 174


>gi|99081529|ref|YP_613683.1| hypothetical protein TM1040_1688 [Ruegeria sp. TM1040]
 gi|99037809|gb|ABF64421.1| DNA polymerase [Ruegeria sp. TM1040]
          Length = 234

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 36/163 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTD----VTIVAHN-SYFERTVLKA---CF 84
            A+  +D PV +           +L +   + D     T+V HN + F+   L+      
Sbjct: 83  IAWARNDGPVAVRHAKTTADERSILADFFGDLDPYHSETLVGHNIAGFDIGFLRKRAIYL 142

Query: 85  NLDIP--------IHRW---ICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            + +P           W   I   + A + G    ++  + + L +  +   +G ++ A 
Sbjct: 143 GVKMPASCSFPRDPKPWDRSIVDTMAAWAGGTNRISMDELCQILGIQGKDGFDGSQVAAA 202

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +  G             H +      EYCK DV  TREI KR 
Sbjct: 203 WAAG------------EHDK----IAEYCKDDVWRTREIHKRF 229


>gi|73661352|ref|YP_300133.1| hypothetical protein SSP0043 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493867|dbj|BAE17188.1| hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 366

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            + R  +    +    N    +R + +L  I T      T + + LQ +   V+  ++ S
Sbjct: 101 HSDRIEKLFDRLEQALN--GTNRLYTQLSLIGTRTHRITTKNFN-LQGLPKAVQRTILPS 157

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           + KK+   D    E  V+A+M  +   +      + LY    +        ++  +QR +
Sbjct: 158 KYKKVYTVDFKSFEPSVVAYMTQDSKLIDFLNQKDGLYDALLSEL------ELQDEQRVL 211

Query: 432 GKVMELALGYQGG 444
            K   +     GG
Sbjct: 212 VKRAFIGSFLFGG 224


>gi|126654385|ref|ZP_01726134.1| Oligoendopeptidase F [Bacillus sp. B14905]
 gi|126589170|gb|EAZ83349.1| Oligoendopeptidase F [Bacillus sp. B14905]
          Length = 605

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 64/217 (29%), Gaps = 20/217 (9%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARV----------LAWMAGEQWKLKAFETGEDLYVT 411
           +  R+   A   K    +D     A+V          +A + G           +D+  +
Sbjct: 208 EVRRAAFKAFSSKL---SDYQHTTAQVYNTHIQQEKTMADLRGFDSIFDYLLFDQDVDRS 264

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT----GLNLNTFAHLVK 467
            Y R  ++   ++    R   K+++ A G +    A  K+A  +     L+++     V 
Sbjct: 265 LYNRQIDLISKELAPHMRRYAKLIQKANGIEHMTFADLKIALDSTYDPKLSMDEAKEYVD 324

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            + A    +      R  +E   + A      G +      +    H  +   WNE    
Sbjct: 325 KSLAVMGEDYNHLMDRAFKERWIDFAPNK---GKSTGAFCSSPYGSHPYILMSWNERMNE 381

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
               +                 Y     +   +  PS
Sbjct: 382 VFTLVHELGHAGHFANTYAHQSYFNSRPSLYFIEAPS 418


>gi|49257042|dbj|BAD24831.1| hypothetical protein [Staphylococcus aureus]
          Length = 369

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 93/283 (32%), Gaps = 25/283 (8%)

Query: 256 ETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           +    + +  +  L P   ++ +    +   +   +K   L +A N +            
Sbjct: 56  KAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHF---------- 105

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
            +  +    +    N    +R + +L  I T      T   + +Q +   V+  ++ S+ 
Sbjct: 106 DKIEQLFDRLDQSLN--GTNRLYTQLSLIGTRTHRITTKRFN-VQGLPKLVQQMILPSQF 162

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           KK+   D    E  V A+M  ++  +      E LY         +    ++K++R   K
Sbjct: 163 KKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDA------LLRDLSLSKEKRVSVK 216

Query: 434 VM---ELALGYQGGAKAFQKMASTTGLN-LNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                    G +  +  F+     + +N L   +   K     E+ E  +         H
Sbjct: 217 RAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKVIEFKEQVEKYKTMPTPYGIEH 276

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              A + + I     +   ++  KH  +     +  Q   + I
Sbjct: 277 DMSAFQGISIMAIYVQTVASYIFKHILLEVYKAQCEQKTFKII 319


>gi|170577048|ref|XP_001893862.1| DNA polymerase I family protein [Brugia malayi]
 gi|158599875|gb|EDP37305.1| DNA polymerase I family protein [Brugia malayi]
          Length = 977

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 73/236 (30%), Gaps = 41/236 (17%)

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE------------Q 396
               +P   Q+I   ++S V   E   +V AD+   E  + A +                
Sbjct: 650 LTAINPKDDQMIGTNLKSMVECPEDWHIVGADVDSQEQWIAAMLGDCCVGKGTAGVTPFS 709

Query: 397 WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             L A    +  DL+                   R   KV+  A  Y  G     +    
Sbjct: 710 NMLLAGSKSDNSDLHSVIAKEV---------GISRDKAKVLNYARLYGSGIVHAAEFLIQ 760

Query: 455 TGLNLNTFAHLV---------KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           +G+N     ++          K  +  +  E   ++ RW  +N     ++  ++      
Sbjct: 761 SGMNATKALNVSNKLFATTKGKRFNFLKLNESYNDYFRWYIDNICPSKMKADYVYANGTY 820

Query: 506 VKKAWRQKHSRVS---------ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
               +R +  +++          +WN+L +  +  +    A+       V + ++ 
Sbjct: 821 FLPEYRIRQGKLTLNFEDWLYESVWNKLRENGQDEVVQSSAVDFLHLLIVCMKWLC 876


>gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
 gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 27/173 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV+       D   ++            LK+ L +  +  + H +
Sbjct: 24  IDTETMGLKPHRDRLCVVQM--SPGDGSADVIQIARGQHDAPNLKKLLGDPAIVKIFHFA 81

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR----SNGLPSALKAVGEALKLSSQKMEEGKEL 129
            F+   L   F   +      CT + +R              V EAL +   K ++    
Sbjct: 82  RFDLAALHNAFG--VMPRPVYCTKIASRLTRTYTDRHGLKDLVREALSIDLSKQQQSS-- 137

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                         D       +A      Y   DV     +  +L+ + ++E
Sbjct: 138 --------------DWGSLALSDAQ---LAYAASDVLHLHALRDKLDAMLARE 173


>gi|99081315|ref|YP_613469.1| ribonuclease D [Ruegeria sp. TM1040]
 gi|99037595|gb|ABF64207.1| ribonuclease D [Ruegeria sp. TM1040]
          Length = 385

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 23/161 (14%)

Query: 24  YAEDVCVILFAFGFDDH-PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
           Y   +C+I  A+  D      L D +   +  + L E   N DV  V H +  +  +   
Sbjct: 35  YYSKLCLIQIAYRGDGETDAVLVDPLSGDLSLEPLYELFRNEDVVKVFHAARQDLEIF-- 92

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHE 140
             +  +       T V A   G    +                 + L+ + CK   +   
Sbjct: 93  WVDAGVFPKPLFDTQVAAMVCGFGEQVGY---------------ETLVRKICKQGLDKTS 137

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
              D ++    +A +    Y   DVT  R+I++ L     K
Sbjct: 138 RFTDWSRRPLSDAQKT---YALADVTHLRQIYEHLRKELDK 175


>gi|258591967|emb|CBE68272.1| Exonuclease-like protein [NC10 bacterium 'Dutch sediment']
          Length = 162

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 28/167 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M   ++D ET     +T  G+  YA D  +I    G     V +W             +A
Sbjct: 1   MK-AYLDIETSFDGAITVVGL--YAPDRGLIQL-IGTQISDVTVW-------------QA 43

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           L+  +     + S F+  V++    LD+         +      GL   LK V   L + 
Sbjct: 44  LDGVETICTYNGSRFDLPVIRRRLGLDLCATIESHDLMYTCWRYGLFGGLKRVEAQLSIP 103

Query: 120 SQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
            + K  +G E +  + + E              EA ++   Y + DV
Sbjct: 104 RRSKGIDGMEAMRLWSRYEDG---------GDEEALQMLLTYNREDV 141


>gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
 gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
          Length = 232

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 32/169 (18%)

Query: 11  RSP---IDLTKCGICKYAEDVCVILFA-FGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
            S    +D+   G+  + ED  + L A +  D   V          + + +K  L +  V
Sbjct: 61  YSKIIGVDIETTGLD-FLED-SIRLIAVYSEDFEYV-------GEDL-EAVKTLLTDPSV 110

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
             V H+S F+   LK                 +  +  +  +L  + +   L     +  
Sbjct: 111 LKVFHHSQFDVCFLKKAGIDVCTFTDTFIMNQILNNLPVFDSLSRLAKVY-LGKSLDKSL 169

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +                D  + ++         YC  D   T E+++ +
Sbjct: 170 Q---------HADNWQSDLTQEHYA--------YCLDDAKTTYELYQHM 201


>gi|169827729|ref|YP_001697887.1| oligoendopeptidase F-like protein [Lysinibacillus sphaericus C3-41]
 gi|168992217|gb|ACA39757.1| Oligoendopeptidase F-like protein [Lysinibacillus sphaericus C3-41]
          Length = 605

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 63/217 (29%), Gaps = 20/217 (9%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARV----------LAWMAGEQWKLKAFETGEDLYVT 411
           +  R+   A   K    +D     A+V          +A + G           +D+  +
Sbjct: 208 EVRRAAFKAFSSKL---SDYQHTTAQVYNTHIQQEKTMADLRGFDSIFDYLLFDQDVDRS 264

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT----GLNLNTFAHLVK 467
            Y R  ++   ++    R   K+++ A G +    A  K+A        L+++     V 
Sbjct: 265 LYNRQIDLISKELAPHMRRYAKLIQKANGIEHMTFADLKIALDAAYDPKLSMDEAKEYVD 324

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
              A    +      R  +E   ++A      G +      +    H  +   WNE    
Sbjct: 325 KALAIMGEDYNHLIDRAFKERWIDYAPNK---GKSTGAFCSSPYGSHPYILMSWNERMNE 381

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
               I                 Y     +   +  PS
Sbjct: 382 VFTLIHELGHAGHFANTHAHQSYFNSRPSLYFIEAPS 418


>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
 gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
          Length = 380

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  Y E   + L  F        L D +    +   L E   N  +  V H +
Sbjct: 33  VDTESNGLHAYQE--QICLIQFSVPGAD-YLVDPLASVNL-SGLNEIFSNPGIEKVFHAA 88

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG 104
            ++   LK  F           T++ AR  G
Sbjct: 89  EYDILCLKRDFGFTF--THLFDTMIAARILG 117


>gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
 gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
          Length = 218

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 56/178 (31%), Gaps = 32/178 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQVLKEALENTDVT 67
           +D    G+    +   + L      D+   L   V           P  LK  LE+  VT
Sbjct: 31  VDTETMGLDPRRD--RLCLVQLSAGDNSAHLVQIVPPALGGRGADCP-NLKRLLEHPGVT 87

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKME 124
            + H + F+  +L     +       ICT + ++          LK +   L        
Sbjct: 88  KLFHFARFDLAMLYHALGVTTAP--VICTKIASKLVRTYTDRHGLKDLCRDLV------- 138

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            G E+     + +T +       P           Y   DV     I+ RLE L  +E
Sbjct: 139 -GIEISK---QQQTSDWGSAELSPEQ-------CAYAASDVLHLHAIWARLEALLVRE 185


>gi|158289252|ref|XP_311006.4| AGAP000139-PA [Anopheles gambiae str. PEST]
 gi|157018965|gb|EAA06413.4| AGAP000139-PA [Anopheles gambiae str. PEST]
          Length = 1135

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 51/180 (28%), Gaps = 27/180 (15%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P+         + +     + ++     + +   +R+ V A  G +LV AD+   E  
Sbjct: 738 IIPQVVVCGTLTRRAMEPTWMTASNA--QRERVGSELRAMVQAPPGYRLVGADVDSQELW 795

Query: 388 VLAWMAGEQW-------------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + + + G+                     T  D++  T                R   KV
Sbjct: 796 IASVL-GDAGTGLHGGTPFGWMTLSGTKATRTDMHSVTAQAV---------GISRDHAKV 845

Query: 435 MELALGYQGGAKAFQKMASTTG--LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           +  A  Y  G +  +++       L                +          +++ +P  
Sbjct: 846 LNYARIYGAGQQFAERLLKQFNPTLTGAEARSKATKMFTLTKGRRTYRLREELRDQYPTQ 905


>gi|86608835|ref|YP_477597.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557377|gb|ABD02334.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 210

 Score = 44.4 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 35/191 (18%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           E    +D    G+    + +CV+  A       V L            L + L    +  
Sbjct: 24  EPYLAVDTETMGLIPQRDRLCVVQIANSA--GEVVLLRLSRGVKQAPFLAQLLMAPSIEK 81

Query: 69  VAHNSYFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           + H + F+  +L+    +   P+        LAR+      L                 K
Sbjct: 82  IFHYARFDLAMLRYHLGIRAWPVFCTKIASKLARTYTSKHGL-----------------K 124

Query: 128 ELIARFCKGETHECLYDRNKPNHREAW-------RLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++++  C         + NK      W           EY   DV     +  +L  +  
Sbjct: 125 DVVSELC-------GVELNKTAQSSDWGAVHALSAEQLEYAANDVRYLIPVRHKLAEMLR 177

Query: 181 KEQELWYLDQT 191
           +E E W L Q 
Sbjct: 178 RE-ERWELAQQ 187


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score = 44.4 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELW------ 45
           M  + IDFET          I LT     K  E+    +      F   P+ +W      
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQ--PMNIWIHGIRP 58

Query: 46  -DCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
            D  ++     + + +K+ ++   V   AHN+ F+ +VL+     +++  P   + CT+V
Sbjct: 59  EDVENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVV 116

Query: 99  LAR--SNGLP-SALKAVGEALKLSSQKMEEGKE 128
           +A+     LP   L  V EAL         G++
Sbjct: 117 MAKNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score = 44.4 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELW------ 45
           M  + IDFET          I LT     K  E+    +      F   P+ +W      
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQ--PMNIWIHGIRP 58

Query: 46  -DCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
            D  ++     + + +K+ ++   V   AHN+ F+ +VL+     +++  P   + CT+V
Sbjct: 59  EDVENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVV 116

Query: 99  LAR--SNGLP-SALKAVGEALKLSSQKMEEGKE 128
           +A+     LP   L  V EAL         G++
Sbjct: 117 MAKNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|324506474|gb|ADY42763.1| DNA polymerase subunit gamma-1 [Ascaris suum]
          Length = 790

 Score = 44.4 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 37/128 (28%), Gaps = 23/128 (17%)

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ------------ 396
               +P   ++I   ++S V  SEG  LV AD+   E  + A +                
Sbjct: 658 LTAINPKDNEMIGTGLKSMVECSEGWNLVGADVDSQEQWIAALLGDCAVGKHTAGATPFS 717

Query: 397 WKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             L A       DL+                   R   KV+  A  Y  G     +    
Sbjct: 718 NMLLAGNKADHSDLHSVVAKEV---------GISRDKAKVLNYARLYGSGLNHAVEFLKQ 768

Query: 455 TGLNLNTF 462
           +GL     
Sbjct: 769 SGLADEQA 776


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score = 44.4 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 22/132 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVL 57
             L I   T +P D T+ G      D          D  PV +              + +
Sbjct: 35  RVLSIAVLTFAP-DGTQTGEYTTLLDPGC-------DPGPVHVHGLTAERLRGAPAFEQV 86

Query: 58  KE---ALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP---SA 108
            +   AL +  V  VAHN+ F+   L   F    L +P+ R +CTL L R    P    +
Sbjct: 87  ADRIGALLDGRVM-VAHNAQFDYDFLAHEFARARLHLPVARRLCTLALNRRVEPPVAGLS 145

Query: 109 LKAVGEALKLSS 120
           L ++     +  
Sbjct: 146 LASLAAYYGVPQ 157


>gi|70725054|ref|YP_251968.1| hypothetical protein SH0053 [Staphylococcus haemolyticus JCSC1435]
 gi|68445778|dbj|BAE03362.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
 gi|166197599|dbj|BAG06208.1| hypothetical protein [Staphylococcus aureus]
 gi|221148480|gb|ACL99841.1| hypothetical protein [Staphylococcus pseudintermedius]
 gi|238768512|dbj|BAH66824.1| hypothetical protein [Staphylococcus aureus]
 gi|283469274|emb|CAQ48485.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 369

 Score = 44.4 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 22/229 (9%)

Query: 256 ETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           +    + +  +  L P   ++ +    +   +   +K   L +A N +            
Sbjct: 56  KAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHF---------- 105

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
            +  +    +    N    +R + +L  I T      T   + +Q +   V+  ++ S+ 
Sbjct: 106 DKIEQLFDRLDQSLN--GTNRLYTQLSLIGTRTHRITTKRFN-VQGLPKLVQQMILPSQF 162

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           KK+   D    E  V A+M  ++  +      E LY         +    ++K++R   K
Sbjct: 163 KKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDA------LLRDLSLSKEKRVSVK 216

Query: 434 VMELALGYQGGAKAFQKMASTTGL-NLNTFAHLVKTNSAPEEWEDAENF 481
              +     GG  +  K      +  +N    + K     E  E  E +
Sbjct: 217 RAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKVIEFKEQVEKY 265


>gi|291279950|ref|YP_003496785.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
           SSM1]
 gi|290754652|dbj|BAI81029.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
           SSM1]
          Length = 927

 Score = 44.4 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 29/171 (16%)

Query: 7   DFET-RSPIDLTKCGICKYAEDVCV-ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           D ET  S  D    G  K A  + + IL A+ + ++   ++D           K  L+ +
Sbjct: 752 DIETKYSADD---VGGWKNAHKMGIAILVAYSYKNNKYFIYD----EKNISDFKSLLDKS 804

Query: 65  DVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLV-LARSNGLPSALKAVGEALKLSSQK 122
            V I   N   F+  VL      D      +  L  +    G   +L  +  +  L+++K
Sbjct: 805 KVII-GFNIINFDLKVLTPYIKFDFKETYILDILTEIKNITGRRFSLDNIASST-LNTKK 862

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              G + I  F +G+  + +                EYCK DV +T+ IF+
Sbjct: 863 SANGLQSIKWFKEGKIDKII----------------EYCKKDVDITKSIFE 897


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score = 44.4 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELW------ 45
           M  + IDFET          I LT     K  E+    +      F   P+ +W      
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQ--PMNIWIHGIRP 58

Query: 46  -DCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
            D  ++     + + +K+ ++   V   AHN+ F+ +VL+     +++  P   + CT+V
Sbjct: 59  EDVENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVV 116

Query: 99  LAR--SNGLP-SALKAVGEALKLSSQKMEEGKE 128
           +A+     LP   L  V EAL         G++
Sbjct: 117 MAKNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score = 44.4 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELW------ 45
           M  + IDFET          I LT     K  E+    +      F   P+ +W      
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQ--PMNIWIHGIRP 58

Query: 46  -DCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
            D  ++     + + +K+ ++   V   AHN+ F+ +VL+     +++  P   + CT+V
Sbjct: 59  EDVENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVV 116

Query: 99  LAR--SNGLP-SALKAVGEALKLSSQKMEEGKE 128
           +A+     LP   L  V EAL         G++
Sbjct: 117 MAKNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|229472493|gb|ACQ72761.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 174

 Score = 44.4 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 11/89 (12%)

Query: 370 ASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
               +  V AD +G+E R L       +  K        D++       +          
Sbjct: 1   PGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTAPA-EIYGTD------- 52

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTG 456
            R  GK +   L Y GG       A  + 
Sbjct: 53  -RKSGKGVTYCLIYGGGDSKLGLTAGASK 80


>gi|251811418|ref|ZP_04825891.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805047|gb|EES57704.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 369

 Score = 44.4 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 93/289 (32%), Gaps = 25/289 (8%)

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
            L    +    + +  +  L P   ++ +    +   +   +K   L +A N +      
Sbjct: 50  ELLSNEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEH----- 104

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                + +       +    N    +R + +L  I T      T   + +Q +   V+  
Sbjct: 105 -----SDKIEHLFDRLDQSLN--GTNRLYTQLSLIGTRTHRITTKRFN-VQGLPKLVQQT 156

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           ++ S+ KK+   D    E  V A+M  ++  +      E LY         +    ++K+
Sbjct: 157 ILPSQFKKVYTIDFKSFEPSVAAYMTQDEQLIDYLNLEEGLYDA------LLRDLSLSKE 210

Query: 428 QRAIGKVM---ELALGYQGGAKAFQKMASTTGLN-LNTFAHLVKTNSAPEEWEDAENFCR 483
           +R   K         G +  +  F+     + +N L   +   K     E+ E  +    
Sbjct: 211 KRVSVKRAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKIIEFKEQVEKYKTMPT 270

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                H   A +   I     +   ++  KH  +     +  Q   + I
Sbjct: 271 PYGIEHDMSAFQGSSIMAIYVQTVASYIFKHILLEVYKAQCEQKTFKII 319


>gi|330993409|ref|ZP_08317344.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329759439|gb|EGG75948.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 215

 Score = 44.4 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHDPVMPQVLKEALENTDVTIVA 70
           +D    G+  + +   + L      D     V++         P  L   L +  V  + 
Sbjct: 29  VDTETMGLNPHRD--RLCLVQLSAGDGQAHLVQVPPHATAAGFP-NLVRVLTDARVPKIM 85

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLSSQKMEEG 126
           H + F+  +L+  FN+ +     ICT V ++          L  +  E L +   K ++ 
Sbjct: 86  HFARFDVAILQHTFNVTVAPC--ICTKVASKLVRTYTDRHGLANLCRELLGVELSKQQQS 143

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            +                       +  R    Y   DV     +++RLE L  +E
Sbjct: 144 SDW-------------------GATDLTREQLCYAASDVLYLHALWERLEALLHRE 180


>gi|220907840|ref|YP_002483151.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
 gi|219864451|gb|ACL44790.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
          Length = 164

 Score = 44.4 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 46  DCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVL 99
           D    P        L   +  TD    AHN+ F+R+VL AC   + +  P   +ICT+ L
Sbjct: 59  DVAAQPTFGDLWSELHPLIAGTDFIA-AHNAGFDRSVLHACCNSYGIPRPAQNFICTVQL 117

Query: 100 ARS--NGLPSALKAVGEALKLSSQK 122
           AR   +  P+ L  V   L L    
Sbjct: 118 ARRTWSLYPTKLPDVCRFLGLELDH 142


>gi|228470614|ref|ZP_04055471.1| exonuclease [Porphyromonas uenonis 60-3]
 gi|228307741|gb|EEK16717.1| exonuclease [Porphyromonas uenonis 60-3]
          Length = 189

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 25/145 (17%)

Query: 1   MATL---FIDFETRSP--IDLTKCGIC--KYAEDVCVILFAFGFDDHPVELWDCVHDPVM 53
           M TL    IDFET +     + + GIC  +  E      +    + +    W+     + 
Sbjct: 1   MNTLDFIAIDFETATGQRTSICEVGICLVRNGEIAETRSWLVQPEGNRYSYWNMQCHGIR 60

Query: 54  PQVLKEALENTDV-------------TIVAHNSYFERTVL---KACFNLDIPIHRWICTL 97
           P+  K A    +V              +VAHN  F+R+ L      + L +P  +W C+L
Sbjct: 61  PEDTKRAPSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQLYELTLPELQWDCSL 120

Query: 98  VLAR--SNGLPSALKAVGEALKLSS 120
             AR   +     L  + E L +  
Sbjct: 121 RRARQIYDYGCHTLAYLCEQLSIPE 145


>gi|118589455|ref|ZP_01546861.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
 gi|118438155|gb|EAV44790.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
          Length = 206

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 23/173 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + + +CV        D   ++            L   + +T    + H +
Sbjct: 24  VDSETLGLNPHRDRLCV--VQLSPGDGSADVVQIARGQSEAPNLAALMTDTSKPKIFHFA 81

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL+   N+ + P+        L R+      LK +  E L +   K ++  +  A
Sbjct: 82  RFDVAVLQHYLNIRVSPVWCTKIASKLVRTYTDRHGLKDITRELLGVELSKQQQSSDWAA 141

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                   E L D               Y   DV     + +RLE +  +E+ 
Sbjct: 142 --------ETLSDAQLA-----------YAASDVLHLHALKERLEMMLEREER 175


>gi|89075742|ref|ZP_01162130.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
 gi|89048474|gb|EAR54049.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
          Length = 363

 Score = 44.0 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D +    M + L   L +  V  V H    +  V +              T
Sbjct: 35  FDGEQLSLIDPIEVEDM-EPLWALLRDQSVIKVLHACGEDLEVFQHHAG--CLPTPMFDT 91

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            ++A   G   +        +    ++++G+       +  T + L
Sbjct: 92  QLMAAFLGHGISTGFGALVKEYVGVELDKGEARTNWLARPLTAKQL 137


>gi|296115075|ref|ZP_06833717.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
 gi|295978412|gb|EFG85148.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
          Length = 215

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 31/176 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEALENTDVTIVA 70
           +D    G+  + +   + L      D    L            P +L   L +  VT + 
Sbjct: 29  VDTETMGLNPHRD--RLCLVQLSDGDGHAHLVQVPAGATAADFPNML-AVLTDPSVTKLM 85

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLSSQKMEEG 126
           H + F+  +L+  F + +     ICT + ++          L  +  E L +   K ++ 
Sbjct: 86  HFARFDVAILQYTFGITVAPC--ICTKIASKLVRTYTERHGLAHLCRELLGVELSKQQQS 143

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                            D   P+          Y   DV     ++ RLE L  +E
Sbjct: 144 S----------------DWGAPDLTPEQMT---YAASDVLYLHALWARLEALLVRE 180


>gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
 gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
          Length = 187

 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 25/152 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM------P 54
           M    IDFET +P  ++ C +     D   ++F+  +   P   +D  +   +      P
Sbjct: 1   MKWAAIDFETANPSPMSACAVGLTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIHGITP 60

Query: 55  QVLKEALENTDV-----------TIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA 100
             + +A     V            + AHN+ F+  VL +C   + L++P   + CT+ L+
Sbjct: 61  DQVADAPFFPKVYEQLKPWLDGGVLCAHNAGFDMKVLASCCSLYRLELPDAPYFCTVKLS 120

Query: 101 RSNGLP----SALKAVGEALKLSSQKMEEGKE 128
           R    P      L  V + + +     + G +
Sbjct: 121 RKV-YPYLKHHRLNDVCDYMGIQLDHHDAGSD 151


>gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
 gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
          Length = 205

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L + L++  +T + H  
Sbjct: 23  IDTETLGLNPHRDRLCV--VQISPGDGTADVIQIEAGQKKAPNLVKLLKDRSITKIFHFG 80

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +S  K ++  +  A
Sbjct: 81  RFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEICSELLDVSISKQQQSSDWAA 140

Query: 132 R 132
            
Sbjct: 141 E 141


>gi|289674484|ref|ZP_06495374.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 141

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 15/81 (18%)

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
           GR L   D+       N + R+               +Q  + DI+ + M+        +
Sbjct: 33  GRRLYLPDINAK----NQSLRKGAERMA-----INAPMQGTAADIIKKAMVAVNGWLDES 83

Query: 619 KAGYDIVLTVHDEIVCETPDT 639
                ++L VHDE+V E  + 
Sbjct: 84  GLDARVILQVHDELVLEVRED 104


>gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457]
 gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str.
           870]
 gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513]
 gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis
           M163/99/10]
 gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94]
 gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1]
 gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1]
 gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str.
           292]
 gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis
           M292/94/1]
 gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33]
 gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1]
 gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94]
 gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str.
           C68]
 gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99]
 gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28]
 gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 205

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L + L++  +T + H  
Sbjct: 23  IDTETLGLNPHRDRLCV--VQISPGDGTADVIQIEAGQKKAPNLVKLLKDRSITKIFHFG 80

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +S  K ++  +  A
Sbjct: 81  RFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEICSELLDVSISKQQQSSDWAA 140

Query: 132 R 132
            
Sbjct: 141 E 141


>gi|126732863|ref|ZP_01748654.1| 3'-5' exonuclease [Sagittula stellata E-37]
 gi|126706639|gb|EBA05713.1| 3'-5' exonuclease [Sagittula stellata E-37]
          Length = 204

 Score = 44.0 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    L            L   L + DV  + H  
Sbjct: 22  IDCETMGLHPHRDRLCV--VQLSAGDGNAHLVQVARGQTEAPNLSRLLTDPDVLKLFHYG 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+   +   F  L  P++       L R+      LK +  E L +   K ++  +   
Sbjct: 80  RFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQELLGVDISKQQQSSD--- 136

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                   E L D              +Y   DV     +   L  +  +E
Sbjct: 137 -----WGAETLTD-----------AQKDYAASDVLHLHRLRTALNAMLERE 171


>gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1]
 gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1]
          Length = 205

 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L + L++  +T + H  
Sbjct: 23  IDTETLGLNPHRDRLCV--VQISPGDGTADVIQIDAGQKKAPNLVKLLKDRSITKIFHFG 80

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +S  K ++  +  A
Sbjct: 81  RFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEICSELLDVSISKQQQSSDWAA 140

Query: 132 R 132
            
Sbjct: 141 E 141


>gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 205

 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L + L++  +T + H  
Sbjct: 23  IDTETLGLNPHRDRLCV--VQISPGDGTADVIQIEAGQKKAPNLVKLLKDRSITKIFHFG 80

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +S  K ++  +  A
Sbjct: 81  RFDLAVLAHTFGTMPQPVFCTKIASKLTRTYTDRHGLKELCNELLDVSISKQQQSSDWAA 140

Query: 132 R 132
            
Sbjct: 141 E 141


>gi|326680088|ref|XP_001921130.2| PREDICTED: DNA polymerase subunit gamma-1-like [Danio rerio]
          Length = 1203

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 88/344 (25%), Gaps = 49/344 (14%)

Query: 326  PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            PQ +P    +     + +     + ++       +   +++ V       LV AD+   E
Sbjct: 803  PQVIP----AGTVTRRAVEPTWLTASNA--RKDRVGSELKAMVQVPPAYHLVGADVDSQE 856

Query: 386  ARVLA-----WMAGEQW--------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              + A       AG                  G DL+  T                R   
Sbjct: 857  LWIAAMLGEAHFAGMHGCTAFGWMTLQGKKSQGTDLHSRTA---------DAVGISREHA 907

Query: 433  KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
            KV      Y  G    Q  A    +  N      +      +        R    +    
Sbjct: 908  KVFNYGRIYGAG----QPFAERLLMQFNHRLSQQEAAGKARQMYALTKGLRRYHLSEEGE 963

Query: 493  AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                       +      R +   +S    +L +  +   + G             V+  
Sbjct: 964  -------WLLQKLNVNVERAEDGSIS--LQDLRKISKVATQRGSKKKWNLTAG--RVWTD 1012

Query: 553  KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
              ++ +   L S               ++        +  +       +VQ+ + D L  
Sbjct: 1013 GTESYMFNKLESIAQSDRPATPVLNCRISRALEPSAVQEEFITSRVNWVVQSSAVDYLHL 1072

Query: 613  GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             +++               +++HDE+       D + A++   +
Sbjct: 1073 MLVSMRWLFEEHDIDGRFCISIHDEVRYLVTSEDRYRAALALQI 1116


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 36/175 (20%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHDPV 52
            + +D+   G+ +  +D  +    +  D                    PV +     D +
Sbjct: 23  YAVVDVETTGLAR--DDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDAL 80

Query: 53  MPQVLKEALENT------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
               L + + +          +VAHN+ F+  ++   +       P+ + +CT+VL++  
Sbjct: 81  EGAPLFQDIADEFSSRLDGRVLVAHNAVFDWQMIAREYARAGRVAPVSQRLCTIVLSKEL 140

Query: 104 GLPSA---LKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHR 151
           GLP     L+++     +  Q+    +++ + L   F              P H 
Sbjct: 141 GLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLRAAAARSVRLPLHE 195


>gi|146337290|ref|YP_001202338.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
 gi|146190096|emb|CAL74088.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
          Length = 204

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 26/184 (14%)

Query: 7   DFETRSP---IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           D    +    ID    G+  + + +CV        D   ++            LK  L N
Sbjct: 12  DLSRYTSSVAIDTETMGLNPHRDRLCV--VQLSPGDGSADVVQIPKGHTDAPNLKTLLGN 69

Query: 64  TDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQ 121
           T +T + H + F+   L   F  +  P++       LAR+      L   V E L +   
Sbjct: 70  TAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDLVRELLNIDLS 129

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K ++  +                               Y   DV     + ++L+ + ++
Sbjct: 130 KQQQSSDW-------------------GADSLSEPQLAYAASDVLHLHALREKLDVMLAR 170

Query: 182 EQEL 185
           E  L
Sbjct: 171 EGRL 174


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score = 44.0 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 29/153 (18%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELW------ 45
           M  + IDFET          I LT     K  E+    +      F   P+ +W      
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQ--PMNIWIHGIRP 58

Query: 46  -DCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
            D  ++    +    +K+ ++   V   AHN+ F+ +VL+     +++  P   + CT+V
Sbjct: 59  EDVENERTFNEIWKEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVV 116

Query: 99  LAR--SNGLP-SALKAVGEALKLSSQKMEEGKE 128
           +A+     LP   L  V EAL         G++
Sbjct: 117 MAKNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
 gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
          Length = 203

 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 54/171 (31%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D    +            L   L +  V  + H +
Sbjct: 22  IDTETMGLVPARDRLCV--VQLSSGDGDAHMVQIAQGQTEAPNLTRMLTDPKVLKLFHYA 79

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKA-VGEALKLSSQKMEEGKELIA 131
            F+   L+  F +   PI+       L R+      LKA + E L +   K ++      
Sbjct: 80  RFDVAALENAFGVRTAPIYCTKIASKLVRTYTDRHGLKALLSEVLGVDVSKAQQSS---- 135

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                       D   P    A     +Y   DV     + + L+ + ++E
Sbjct: 136 ------------DWGAPTLSAAQ---LDYAASDVLYLHRLKEALDGMLARE 171


>gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 189

 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 21/179 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+    +   + L      +  V              LK  +E  +V  + H +
Sbjct: 9   VDTETMGLLPQRD--RLCLVQLCNPEGKVTAIRIAKGQTEAPNLKILMEAVNVVKIFHFA 66

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   L+    + + P+        LAR+      LK V    +L   ++++  +    
Sbjct: 67  RFDIATLRHNLGIQVQPVFCTKIASKLARTYTNRHGLKEV--VQELEHIELDKSSQ---- 120

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        N  N  EA      Y   DV     + ++L  +  +E E W + Q 
Sbjct: 121 --------SSDWGNAANLSEAQ---LNYAANDVRYLISVRQKLMEMLQRE-ERWEIAQE 167


>gi|229472295|gb|ACQ72662.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 177

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 11/89 (12%)

Query: 370 ASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
               +  V AD +G+E R L       +  K        D++       +          
Sbjct: 4   PGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD------- 55

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTG 456
            R  GK +   L Y GG       A  + 
Sbjct: 56  -RKSGKGVTYCLIYGGGDSKLGLTAGASK 83


>gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 216

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 24/179 (13%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           ++FE    ID    G+        + L         V L     +   P  L   L + +
Sbjct: 26  LNFEDAVAIDTETMGLV--CRRDRLCLVQLADSSGNVHLVKFSGNYQAP-NLVSVLSDPN 82

Query: 66  VTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG-EALKLSSQKM 123
           +  + H + F+  V++    +     +       L R+      LK +  E L +   KM
Sbjct: 83  IIKIFHFARFDIAVMRYYLGMWANPCYCTKIASKLVRTYTDHHGLKELCYELLGVKLNKM 142

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           ++  +        E                      Y   DV     +  +L+ +  +E
Sbjct: 143 QQSSDWGRESLTSEQLN-------------------YAASDVIYLHALKSKLDAMLQRE 182


>gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPADITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           D V    +P+   +AL      I+AHN+ F+R  L+  F++      W C+
Sbjct: 136 DMVKGQTIPREKLDALIAEADIIIAHNAGFDRPFLER-FSIAFANKPWACS 185


>gi|331229914|ref|XP_003327622.1| DNA polymerase gamma [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309306612|gb|EFP83203.1| DNA polymerase gamma [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1303

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 55/201 (27%), Gaps = 23/201 (11%)

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
                      LP+ +       +       +  +       I   ++S + A  G  +V
Sbjct: 794 PEPSRCKQGLILPQVTVMGTITRRATEKTWLAAANAKK--NKIGTELKSMIRAPPGYAIV 851

Query: 378 VADLAGIEARVLAWMAGEQ-WKLKAFE-----------TGEDLYVTTYARSFNVAPAQVT 425
            AD+   E  + + M   Q     A              G DL+  T +    ++     
Sbjct: 852 GADVDSEELWISSVMGDAQFGMHGATAIGWMTLEGTKVAGTDLHSKTAS-ILGIS----- 905

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   KV   +  Y  G     ++        +               +  +N+   M
Sbjct: 906 ---RNDAKVFNYSRIYGAGIAHAVQLLMKADPTASKTEATKLAKQLYASTKGVKNYRADM 962

Query: 486 QENHPEHAIEDLFIGTACERV 506
            E    +   + ++    E++
Sbjct: 963 FERKFWYGGTESYLFNKLEQI 983


>gi|254409855|ref|ZP_05023636.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196183852|gb|EDX78835.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 207

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 21/179 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  Y  D  + L         V +            LK+ LE   V  V H +
Sbjct: 27  VDTETMGL-IYQRD-RLCLVQLCDPQDRVTVIRIDKKQTEAPNLKQLLEAQTVLKVFHFA 84

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+  +L+   ++ + P+        LAR+      LK +   + L   +++        
Sbjct: 85  RFDLAILRQNLDIYVQPVFCTKIASKLARTYTNRHGLKDL--VMDLEQVELD-------- 134

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                      D   PN+    +L   Y   DV     + ++L  +  +E E W L Q 
Sbjct: 135 -----KSSQSSDWGNPNNLSDEQL--RYAANDVRYLLSVRQKLITMLQRE-ERWQLAQE 185


>gi|17537597|ref|NP_496592.1| hypothetical protein Y57A10A.15 [Caenorhabditis elegans]
 gi|6433820|emb|CAB60771.1| C. elegans protein Y57A10A.15, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1072

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 108/346 (31%), Gaps = 74/346 (21%)

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ-------------------WKL 399
           +I   +++ V A  G +LV AD+   E + LA + G+                      +
Sbjct: 669 VIGTGIKAMVQAPAGYRLVGADVDSQE-QWLAALYGDASAEKRLPLEKRVAGKTAFSNMM 727

Query: 400 KAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG-AKAFQKMASTTG 456
            A    +  DL+    ++          K  R   KV+  A  Y  G   A + +    G
Sbjct: 728 LAGSKSDNTDLHSVVASQL---------KISRNHAKVLNYARLYGSGETHAGKHLMRVGG 778

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-------RVKKA 509
           L  +             + + A    ++M+ +   + + D +I    E            
Sbjct: 779 LKQSEAESTASQLFKLTKGDVA----KYMKVDVRMNCVVDKYIEEMVENSDVCKILTIDG 834

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG---- 565
                +  S+  +E  +  +  + +  +++        L+Y   +  +    L  G    
Sbjct: 835 IYYMPAYTSQFASETVRFEDWLLSHYSSLLNGSSEPDSLIYSIYENPDEPRRLFVGGYES 894

Query: 566 -------RSLVYRDVGNNRSY-----------LNTTTRQLTREYTYGGKLTENIVQAVSR 607
                   S    D+                   T       +  Y   +   IVQ+ + 
Sbjct: 895 STFNFLETSAAAHDLRTPILGCQIADSLGKLPEGTPDSAY-FDRKYKRSVMNWIVQSSAV 953

Query: 608 DILAEGMMNAT------KAGYDIVLTVHDEI--VCETPDTDEFNAS 645
           D L   +++        K     V+++HDE+  +C+ PD      +
Sbjct: 954 DFLHLLLVSMQWLCDTYKIDARFVISIHDEVRYMCKEPDAPRLALA 999


>gi|7510239|pir||T31635 hypothetical protein Y57A10A.m - Caenorhabditis elegans
          Length = 1171

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 108/346 (31%), Gaps = 74/346 (21%)

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ-------------------WKL 399
            +I   +++ V A  G +LV AD+   E + LA + G+                      +
Sbjct: 768  VIGTGIKAMVQAPAGYRLVGADVDSQE-QWLAALYGDASAEKRLPLEKRVAGKTAFSNMM 826

Query: 400  KAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG-AKAFQKMASTTG 456
             A    +  DL+    ++          K  R   KV+  A  Y  G   A + +    G
Sbjct: 827  LAGSKSDNTDLHSVVASQL---------KISRNHAKVLNYARLYGSGETHAGKHLMRVGG 877

Query: 457  LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-------RVKKA 509
            L  +             + + A    ++M+ +   + + D +I    E            
Sbjct: 878  LKQSEAESTASQLFKLTKGDVA----KYMKVDVRMNCVVDKYIEEMVENSDVCKILTIDG 933

Query: 510  WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG---- 565
                 +  S+  +E  +  +  + +  +++        L+Y   +  +    L  G    
Sbjct: 934  IYYMPAYTSQFASETVRFEDWLLSHYSSLLNGSSEPDSLIYSIYENPDEPRRLFVGGYES 993

Query: 566  -------RSLVYRDVGNNRSY-----------LNTTTRQLTREYTYGGKLTENIVQAVSR 607
                    S    D+                   T       +  Y   +   IVQ+ + 
Sbjct: 994  STFNFLETSAAAHDLRTPILGCQIADSLGKLPEGTPDSAY-FDRKYKRSVMNWIVQSSAV 1052

Query: 608  DILAEGMMNAT------KAGYDIVLTVHDEI--VCETPDTDEFNAS 645
            D L   +++        K     V+++HDE+  +C+ PD      +
Sbjct: 1053 DFLHLLLVSMQWLCDTYKIDARFVISIHDEVRYMCKEPDAPRLALA 1098


>gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
 gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
          Length = 203

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+    E   + +      D    +            L+  + +  +  + H +
Sbjct: 22  VDTETMGLHP--ERDQLCVVQLSAGDGNAHIVQLDRGTYNAPRLRALMADPAILKIFHFA 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+  +L+    +        CT + ++              A +L +  M + ++    
Sbjct: 80  RFDVAMLQRYLGVVTAP--VYCTKIASKLVRTYTDRHGLKDLARELVNIDMSKQQQSSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                T   L                 Y   DV    EI   L+ + ++E
Sbjct: 138 GAASLTDAQL----------------SYAASDVLHLHEIKSVLDGMLARE 171


>gi|58262724|ref|XP_568772.1| gamma DNA-directed DNA polymerase [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57223422|gb|AAW41465.1| gamma DNA-directed DNA polymerase, putative [Cryptococcus neoformans
            var. neoformans JEC21]
          Length = 1376

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 60/207 (28%), Gaps = 27/207 (13%)

Query: 327  QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
              LP+         + +     + ++       +   +++ V A  G  +V +D+   E 
Sbjct: 943  MILPQVITMGTVTRRAVEATWLTASNAKK--NRVGSELKAMVRAPPGYSIVGSDVDSEEL 1000

Query: 387  RVLAWMAGEQ-WKLKAFE-----------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             + + M   Q     A              G DL+  T +    ++        R   KV
Sbjct: 1001 WISSVMGDSQFGMHGATAIGWMTLEGNKSAGTDLHSKTAS-ILGIS--------RDAAKV 1051

Query: 435  MELALGYQGGAKAFQKMA--STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE- 491
               +  Y  G K   ++     + L   T   L        +   A         + P  
Sbjct: 1052 FNYSRIYGAGKKHAVQLLLQGDSKLTKETAGKLADNLYKSTKGAKALRARNLPVASVPSL 1111

Query: 492  -HAIEDLFIGTACERVKKAWRQKHSRV 517
             H   + ++    E +  + R     +
Sbjct: 1112 WHGGSESYLFNTLEAIALSDRPTTPAL 1138


>gi|118094101|ref|XP_423459.2| PREDICTED: similar to phosphodiesterase 4D interacting protein
           [Gallus gallus]
          Length = 1394

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 26/192 (13%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           +L       D  + R + ++   L  KEQEL  L  +I +RG   D+     +    +  
Sbjct: 572 KLQQRVSDRDAALERAVDEKFCALEEKEQELQQLRLSIKERGG--DLERLRNVLSSNEAT 629

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----------------T 257
              L+  L++ T  L   S   E L+ WL  E         +                  
Sbjct: 630 IHSLESLLKAKTLELEQMSATCENLR-WLKEEIEAKSCSRQKEQEGIIQQLQTCLHDRNK 688

Query: 258 TCQRVLSSNK-KLTP---QAIQVFNNRMRASRSAVLKLNTLVE--AMNSDGRLRGTLQFL 311
             + + ++   KL P   +  +    R++     + +L +     AM  D  +R  LQ +
Sbjct: 689 EVEELTATLLCKLGPGQSEVAEELCLRLQRKEKMLQELLSDRNRQAMEHDAEIRELLQAM 748

Query: 312 GASRTGRWSGCV 323
                   +   
Sbjct: 749 STKEQWSKATTE 760


>gi|99035969|ref|ZP_01315013.1| hypothetical protein Wendoof_01000149 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 529

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           K L      ++ L  +   +   G  +++     L+         L+ E+ +L  G   +
Sbjct: 438 KLLTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLA-GERFN 496

Query: 233 SRCLEKLKTWLFLETGL 249
               ++L   LF + GL
Sbjct: 497 IASPKQLSDVLFNKMGL 513


>gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
 gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
          Length = 234

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 56  VLKEALEN--TDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVLA--RSNGLPS 107
            + EA  +   D  IVAHN+ F+R  +     L    ++P HRWI TL LA  R  G+ +
Sbjct: 75  EIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWIDTLALAKQRFPGMHN 134

Query: 108 ALKAVGEALKLSSQKMEEGKELI 130
           +L A+ +  K+S  + E+   LI
Sbjct: 135 SLDALCKRFKISLAEREKHGALI 157


>gi|167600455|ref|YP_001671954.1| hypothetical protein PPLUZ19_gp12 [Pseudomonas phage LUZ19]
 gi|161168318|emb|CAP45482.1| hypothetical protein [Pseudomonas phage LUZ19]
          Length = 269

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY--QGGAKAFQKMASTTGLNLN 460
           +DLY    +  FNV  +QVT + R + K    A  Y  +  A      A  +G+  +
Sbjct: 4   KDLYTNLASGMFNVPCSQVTPEMRRVAKSRAFAHAYTPKKQASGGTYTARVSGVTCD 60


>gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 550

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+   G+  YA+ +C +  A     + V +         PQ L + L + ++  + HN+ 
Sbjct: 380 DIETTGLNWYADRICTVQLAC---GNRVAVVQLPEGHT-PQRLSQILGDQNILKIFHNAR 435

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSN 103
           F+   +   +++        CTL L R  
Sbjct: 436 FDLRFMVYHWSVI--PQNVACTLELVRLL 462


>gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois]
 gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois]
          Length = 216

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 23/154 (14%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L      D    L            LK  + +  V  + H + F+  +L+      +   
Sbjct: 49  LVQLSTGDGTAHLVRFNGTDYSAPRLKSLIVDPAVIKIFHFARFDIAILRHYLG--VLTE 106

Query: 92  RWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              CT + +R         +LK +     L   ++ +GK+         T E +      
Sbjct: 107 NCYCTKIASRLVRTYTDHHSLKELCS--DLLGVRLNKGKQSSDWGSASLTREQM------ 158

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                      Y   DV     I + L+ +  +E
Sbjct: 159 ----------SYAASDVLYLHAIKEALDVMLKRE 182


>gi|313631122|gb|EFR98661.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 36

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
           +V     GLP++L  + +AL+L+ +K  EGK LI  
Sbjct: 1   MVHGTLLGLPASLDMMSKALRLAQEKDNEGKALIRY 36


>gi|197935875|ref|YP_002213711.1| hypothetical protein RSB1_gp22 [Ralstonia phage RSB1]
 gi|197927038|dbj|BAG70380.1| hypothetical protein [Ralstonia phage RSB1]
          Length = 264

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 40/202 (19%)

Query: 2   ATLFIDFETRSPI--------DLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVH--- 49
             L ID ET SPI        D     + +   +  ++ F   +     V   D  +   
Sbjct: 5   KILTIDIET-SPIGAHVWRLFD-ENVALNQITAEWTILSFCAKWLGSDEVIYEDTFNQRN 62

Query: 50  ---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIP-IHRWICTLVLAR- 101
              D  + + + + L+  D+ I  +   F+R  + A F    L  P  +R + T+++AR 
Sbjct: 63  KRDDKRIVKRIHKLLDEADIVIGQNVQKFDRRKINARFIMNGLTPPSPYRVVDTMLMARK 122

Query: 102 SNGLPSA-LKAVGEALKLSSQKMEEGK----ELIARFCKGETHECLYDRNKPNHREAWRL 156
           + G  S  L+ + E L    +K++  K    EL A F                + EA   
Sbjct: 123 TFGFTSNKLEWLSEKLCTQYKKLKHKKFPGFELWAAF-------------LAGNPEAQEE 169

Query: 157 FGEYCKGDVTVTREIFKRLEPL 178
             EY   DV  T E++ +L P 
Sbjct: 170 MREYNIVDVRSTEELYLKLRPW 191


>gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium]
          Length = 202

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 24/171 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    +   + L      D    L         P+ LK  L + +   + H +
Sbjct: 22  IDTETMGLNPMRD--RLCLVQLSSGDGDAHLVHFQGRYEAPR-LKALLADHNRLKLFHYA 78

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIA 131
            F+  +L     +   P++       L R+N     LK +    L +   K ++  +   
Sbjct: 79  RFDIAMLARWLGVTCTPVYCTKIASRLTRTNTDKHGLKDLCRDLLGIDLSKQQQTSDW-- 136

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                               +       Y   DV     +  +L+ L  +E
Sbjct: 137 -----------------GSGDLTAEQQAYAASDVLHLHALKAKLDALLKRE 170


>gi|56752739|gb|AAW24581.1| SJCHGC05886 protein [Schistosoma japonicum]
          Length = 191

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 596 KLTENIVQAVSRDILAEGMMNATKA-------GY-DIVLTVHDEIVCET-PDTDEFNASM 646
           +   +I+Q  + +I    M+   +A       GY  +VL  HDE++ E  P++      +
Sbjct: 95  QAVNSIIQGSAAEIAKLAMLAVDEAISSANIPGYARLVLHEHDELIYEIFPESSVKQFGV 154

Query: 647 LYHL-MTSN 654
           L    M+S 
Sbjct: 155 LIRQAMSST 163


>gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583]
          Length = 206

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 8/123 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L + L +  +T + H  
Sbjct: 24  IDTETLGLQPHRDRLCV--VQLSSGDGTADIIQIAKGQNSAPNLVKLLADKAITKIFHFG 81

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR----SNGLPSALKAVGEALKLSSQKMEEGKEL 129
            F+  +L   F   I      CT + ++            +   E L ++  K ++  + 
Sbjct: 82  RFDLAILAHTFG--IMPDAVFCTKIASKLTRTYTDRHGLKEICSELLNVNISKQQQSSDW 139

Query: 130 IAR 132
            A 
Sbjct: 140 AAE 142


>gi|134108716|ref|XP_777011.1| hypothetical protein CNBB5370 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50259694|gb|EAL22364.1| hypothetical protein CNBB5370 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1453

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 60/207 (28%), Gaps = 27/207 (13%)

Query: 327  QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
              LP+         + +     + ++       +   +++ V A  G  +V +D+   E 
Sbjct: 1020 MILPQVITMGTVTRRAVEATWLTASNAKK--NRVGSELKAMVRAPPGYSIVGSDVDSEEL 1077

Query: 387  RVLAWMAGEQ-WKLKAFE-----------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             + + M   Q     A              G DL+  T +    ++        R   KV
Sbjct: 1078 WISSVMGDSQFGMHGATAIGWMTLEGNKSAGTDLHSKTAS-ILGIS--------RDAAKV 1128

Query: 435  MELALGYQGGAKAFQKMA--STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE- 491
               +  Y  G K   ++     + L   T   L        +   A         + P  
Sbjct: 1129 FNYSRIYGAGKKHAVQLLLQGDSKLTKETAGKLADNLYKSTKGAKALRARNLPVASVPSL 1188

Query: 492  -HAIEDLFIGTACERVKKAWRQKHSRV 517
             H   + ++    E +  + R     +
Sbjct: 1189 WHGGSESYLFNTLEAIALSDRPTTPAL 1215


>gi|329888476|ref|ZP_08267074.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328847032|gb|EGF96594.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 204

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+ ++  D   +       D    +            LK  L +  V  + H  
Sbjct: 22  IDSETMGL-RFRRDPLCV-VQLSSGDGNAHVVRLNRPAYDCPNLKRLLTDPKVLKIFHFG 79

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEAL-KLSSQKMEEGKELIA 131
            F+  +      ++  P++       LAR+      LK V + L  +   K ++  +   
Sbjct: 80  RFDIGMFDLHLGVETRPVYCTKIASKLARTYTDRHGLKDVAKELAGVDMSKAQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                               E  +   +Y   DV     I  RL  +  +E
Sbjct: 138 -----------------GAAELSQAQLDYAASDVLYLHAIMNRLNEMLVRE 171


>gi|119487547|ref|ZP_01621157.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
 gi|119455716|gb|EAW36852.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
          Length = 309

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 46/253 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHDPVMPQ-VL 57
           L++D E           +  Y     + L       + ++     L+D +  P +    +
Sbjct: 23  LWLDTE-----------VADYKNKPRLSLIQVLTTPNEIKSDHLYLFDVLDQPELTTLFI 71

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +E + N  +  V HN+ ++  +L    +         CTLV+A+    P  L      L 
Sbjct: 72  EEIMANPAIEKVFHNANYDLKLLGKKQS-----KNVTCTLVMAKKI--PYYL------LP 118

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK---R 174
           + + +++     +  F   +  E   D  +    E      EY + DV    +I +   +
Sbjct: 119 VPNYQLKTLATQLGDFTNIDKQEQSSDWGQRPLTEKQ---LEYAQMDVVYLAQIHQCLLK 175

Query: 175 LEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           L+PL      +    +L    Q I      +D  + H    I D  +  +  +    T  
Sbjct: 176 LQPLASPDPTTEDLNKLATRYQEIAHDWKQLDSEITH----IQDRLKQAMKTQQVDQTDS 231

Query: 229 LVSSSRCLEKLKT 241
              SS   + LKT
Sbjct: 232 FKLSSSQRKTLKT 244


>gi|110636308|ref|YP_676516.1| 3'-5' exonuclease [Mesorhizobium sp. BNC1]
 gi|110287292|gb|ABG65351.1| 3'-5' exonuclease [Chelativorans sp. BNC1]
          Length = 205

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 4/140 (2%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L   L N  +T + H +
Sbjct: 23  IDTETLGLNPHRDRLCV--VQLSPGDGTADVVQIAAGQRRAPNLVALLRNRRITKLFHYA 80

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L+++  K ++  +  A
Sbjct: 81  RFDIAVLYHSFGVMPDPVFCTKIASRLTRTYTDRHGLKDICYELLQVNLSKAQQSSDWAA 140

Query: 132 RFCKGETHECLYDRNKPNHR 151
                E  E         HR
Sbjct: 141 EQLTPEQLEYAASDVLYLHR 160


>gi|114704849|ref|ZP_01437757.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
 gi|114539634|gb|EAU42754.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
          Length = 383

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     DD  V +        +       + +  V  V H +  +  ++       
Sbjct: 37  PELCLIQMASDDTEVLVDPLAKGLSL-DPFFALMADESVVKVFHAARQDLEIVYK-LGAV 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           IP      T + A   G   ++       +L+  ++++                   R++
Sbjct: 95  IP-KPLFDTQIAAMVCGFGESIAYDQLVARLTDGRIDKSSRF------------TDWRHR 141

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
           P   +       Y   DVT  R+++K L+    +     +LD+ +
Sbjct: 142 PLSDKQLT----YALADVTHLRDVYKALKAQLEETSRHSWLDEEM 182


>gi|225626336|ref|YP_002727832.1| hypothetical protein PPphikF77_gp13 [Pseudomonas phage phikF77]
 gi|225594845|emb|CAX63127.1| hypothetical protein [Pseudomonas phage phikF77]
          Length = 269

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY--QGGAKAFQKMASTTGLNLN 460
           +DLY    +  F+V  +QVT + R + K    A  Y  +  A      A  +G+  +
Sbjct: 4   KDLYTNLASDMFSVPCSQVTPEMRRVAKSRAFAHAYTPKKQASGGTYTARVSGVTCD 60


>gi|269958513|ref|YP_003328300.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
 gi|269848342|gb|ACZ48986.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
          Length = 204

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 54/171 (31%), Gaps = 24/171 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+        V L      D    L     D   P  L+  + N D+  + H +
Sbjct: 22  VDTETMGLV--CRRDRVCLVQLSSGDGDAHLVKFSGDYSAP-NLRRIVSNPDIMKIFHFA 78

Query: 74  YFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+   ++ CF +   P +       L R+      LK +  E L +   K ++  +   
Sbjct: 79  RFDVAAIRHCFGMWATPCYCTKIASRLVRTYTNHHGLKDLCYELLGVKINKAQQSSDWGR 138

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                E                      Y   DV    +I K+L+ +  +E
Sbjct: 139 EVLTSEQLS-------------------YAAADVIYLHDIKKKLDMMLERE 170


>gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000]
 gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000]
          Length = 237

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLA- 100
               P   ++    L+   D  +VAHN+ F+R      L+ C    I   RW+ TL +A 
Sbjct: 65  LTGKPKFHEIADRFLDFVGDSVVVAHNAAFDRQFVNFELEKCGKAPIHEERWVDTLAMAK 124

Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            R  G+ ++L A+ +  K+S +  ++   LI
Sbjct: 125 KRFPGMYNSLDALCKRFKISLESRDKHGALI 155


>gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 31/144 (21%)

Query: 11  RSPIDLTKCGICKYAE---DVCVILFAF----------------GFDDHPVELW-----D 46
            + +D+   G+  Y +    V +   A                 G D  PVE+      D
Sbjct: 29  FAVLDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETLVNPGAGVDPGPVEVHGLTTAD 88

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFER---TVLKACFNLDIPIHRWICTLVLARS 102
               P    V     E       VAHN+ F+     V      + + +  W+CT+  A++
Sbjct: 89  LAGAPPFRDVAATIAERLAGRVFVAHNAAFDWAFVAVESDRAGVRLEVLDWLCTMRFAKA 148

Query: 103 NGLPS---ALKAVGEALKLSSQKM 123
             L     +L  +     +   K 
Sbjct: 149 LALDVPDKSLATIAAYYAVEQLKA 172


>gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
 gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
          Length = 206

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 8/123 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L + L +  V  + H  
Sbjct: 24  IDTETLGLQPHRDRLCV--VQLSSGDGTADVIQISKGQKSAPNLVKLLGDNAVIKIFHFG 81

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLSSQKMEEGKEL 129
            F+  +L   F   +      CT + ++          LK +  E L ++  K ++  + 
Sbjct: 82  RFDLAILAHTFG--VMPEAIFCTKIASKLTRTYTDRHGLKEICNELLNVNISKQQQSSDW 139

Query: 130 IAR 132
            A 
Sbjct: 140 AAE 142


>gi|332708965|ref|ZP_08428935.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya
           majuscula 3L]
 gi|332352154|gb|EGJ31724.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya
           majuscula 3L]
          Length = 890

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 12/146 (8%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
            +     + D +  P + +     +  N ++  V HN+ F+              +   C
Sbjct: 50  INGDKAYILDVLDQPEIVKDFVNYIMVNPNIEKVFHNASFDL----RYLGGKEQANNVTC 105

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T  +AR        K +   L++S+ K++     +  F   +T E   D  K    +   
Sbjct: 106 TYQIARKLTN----KKLSNPLQVSNHKLKTLALELCNFANVDTEEQSSDWGKRPLTQKQ- 160

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSK 181
               Y K D      + +RL  +S K
Sbjct: 161 --LNYAKMDTVYLAHVHRRLLEISDK 184


>gi|33300823|ref|NP_877451.1| putative DNA binding protein [Pseudomonas phage phiKMV]
 gi|195546653|ref|YP_002117734.1| putative DNA-binding protein [Pseudomonas phage PT5]
 gi|195546715|ref|YP_002117793.1| putative DNA binding protein [Pseudomonas phage PT2]
 gi|33284794|emb|CAD44203.1| putative DNA binding protein [Enterobacteria phage phiKMV]
 gi|158187614|gb|ABW23091.1| putative DNA-binding protein [Pseudomonas phage PT5]
 gi|165880724|gb|ABY70979.1| putative DNA binding protein [Pseudomonas phage PT2]
          Length = 269

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY--QGGAKAFQKMASTTGLNLN 460
           +DLY    +  F+V  +QVT + R + K    A  Y  +  A      A  +G+  +
Sbjct: 4   KDLYTNLASDMFSVPCSQVTPEMRRVAKSRAFAHAYTPKKQASGGTYTARVSGVTCD 60


>gi|152978878|ref|YP_001344507.1| hypothetical protein Asuc_1210 [Actinobacillus succinogenes 130Z]
 gi|150840601|gb|ABR74572.1| conserved hypothetical protein [Actinobacillus succinogenes 130Z]
          Length = 254

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 63/228 (27%), Gaps = 71/228 (31%)

Query: 1   MATLFIDFET----------RSPIDLTKCGICKYAEDVC--------------------- 29
           M  +FID ET              +L   G  K AE +                      
Sbjct: 39  MR-IFIDIETIPTTNADYQNYVCENLKAPGNYKNAEAIEKWLEENKGEAVNKTALDGAFG 97

Query: 30  -VILFAFGFDDH-PV----ELWDCVHDPV-----MPQVLKEALENTDVT--IVAHN---- 72
            +++     DD  PV    E W                L+E    +      + HN    
Sbjct: 98  EIVVIGVAIDDEEPVLFYREDWQSADRETDILTRFNNYLREHANKSTSAPQFIGHNITKF 157

Query: 73  ---SYFERTVLKAC-FNLDIPIHRWICTLV-LARSNGLPSALKAVGEALKLSSQKMEEGK 127
                F+R+V+                T+   A   G   +L  + + L +  +   +G 
Sbjct: 158 DDRFIFQRSVVNGVKPYYTTSRQNTYDTMTEWAGYGG-TVSLDKLCKVLDVEQKGDIDGS 216

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           ++                             EYC  DV   R+I+KR+
Sbjct: 217 KVWQY----------------VQDGKISEVAEYCAKDVERVRQIYKRM 248


>gi|68478473|ref|XP_716738.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
 gi|68478594|ref|XP_716679.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438355|gb|EAK97687.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438419|gb|EAK97750.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
          Length = 1228

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 25/147 (17%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P  +       +   +   + ++       I   ++S V A +G   V AD+   E  
Sbjct: 717 IIPNLATMGTITRRATENTWLTASNAKK--NRIGSELKSLVEAPKGYCFVGADVDSEELW 774

Query: 388 VLAWMAGEQ-----------WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W     E  +  DL+  T +    ++        R   KV
Sbjct: 775 I-ASLVGDSMLQIHGGTALGWMTLEGEKSQKTDLHSKTAS-ILGIS--------RNDAKV 824

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNT 461
                 Y  G K   ++      N+  
Sbjct: 825 FNYGRIYGAGVKFATRLLKQFNANITD 851


>gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170]
 gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170]
          Length = 386

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 18/152 (11%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                D +   +    L   + N  V  V H +  +  +                T V A
Sbjct: 49  EAHCVDPLAPDIDMAPLFALMANESVLKVFHAARQDLEIFLHESG--HLPKPIFDTQVAA 106

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
              G   ++                 + L+A+  K    + +   +        R    Y
Sbjct: 107 MVCGFGDSVGY---------------ETLVAKLAKARIDKSMRFTDWARRPLNDRQLV-Y 150

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             GDVT  R +++RL    +      +LDQ +
Sbjct: 151 AAGDVTHLRVVYERLAETLAANGRTAWLDQEM 182


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELW------ 45
           M  + IDFET          I LT     K  E+    +      F   P+ +W      
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQ--PMNIWIHGIRP 58

Query: 46  -DCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
            D  ++     + + +K+ ++   V   AHN+ F+ +VL+     +++  P   + CT+V
Sbjct: 59  EDVENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDILYPDFEYACTVV 116

Query: 99  LAR--SNGLP-SALKAVGEALKLSSQKMEEGKE 128
           +A+     LP   L  V EAL         G++
Sbjct: 117 MAKNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELW------ 45
           M  + IDFET          I LT     K  E+    +      F   P+ +W      
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQ--PMNIWIHGIRP 58

Query: 46  -DCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
            D  ++     + + +K+ ++   V   AHN+ F+ +VL+     +++  P   + CT+V
Sbjct: 59  EDVENERTFNEIWEEIKDYIDGNLVI--AHNAAFDISVLRKTLDFYDIPYPDFEYACTVV 116

Query: 99  LAR--SNGLP-SALKAVGEALKLSSQKMEEGKE 128
           +A+     LP   L  V EAL         G++
Sbjct: 117 MAKNYYKSLPNHKLGTVSEALDFEFSHHHAGED 149


>gi|221127142|ref|XP_002166917.1| PREDICTED: similar to DNA polymerase gamma [Hydra magnipapillata]
          Length = 592

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 58/197 (29%), Gaps = 33/197 (16%)

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            +GR R   Q       GR          LP+   +     + +        S+P     
Sbjct: 179 RNGRKRIMSQKTVWFDDGRGV-------ILPQVVTAGTVTRRSVEAT-WLTASNP-MFNR 229

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ------------WK-LKAFETGE 406
           I   ++S +    G  LV AD+   E  + A + G+             W  L+  ++  
Sbjct: 230 IGSELKSLIRTPPGYVLVGADVDSQELWI-ASILGDAMFSNMHGSTALSWMTLQGKKSDR 288

Query: 407 -DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            DL+  T                R   KV      Y  G K   ++      N++     
Sbjct: 289 TDLHSKTADTI---------GMSRDQAKVFNYGRIYGAGEKFAVRLLMQFNHNISLAQAE 339

Query: 466 VKTNSAPEEWEDAENFC 482
            K        +  +++ 
Sbjct: 340 EKAAKLYATTKGIKSYL 356


>gi|163846078|ref|YP_001634122.1| exonuclease-like protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523812|ref|YP_002568282.1| exonuclease-like protein [Chloroflexus sp. Y-400-fl]
 gi|163667367|gb|ABY33733.1| exonuclease-like protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447691|gb|ACM51957.1| exonuclease-like protein [Chloroflexus sp. Y-400-fl]
          Length = 168

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 55/176 (31%), Gaps = 40/176 (22%)

Query: 1   MATLFIDFET-RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
           M   ++D ET  S   ++  GI ++             D     +   V   +    L E
Sbjct: 1   MR-AYLDIETTYSGT-MSVIGIYRH-------------DRG---VIQLVGGGIRDVALYE 42

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKL 118
           ALE     +  + S F+  V+K     D+        L+   R  GL   LK V E L +
Sbjct: 43  ALEAVSTIVTFNGSSFDLPVIKRQLQADLRAEFAHRDLLHECRRRGLRGGLKGVEERLGI 102

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +                      L  R+ P     W  + +Y       T   + R
Sbjct: 103 TRV-----------------SSGLTGRDAPR---LWERYEQYADQLALQTLLDYNR 138


>gi|225626350|ref|YP_002727846.1| hypothetical protein PPphikF77_gp27 [Pseudomonas phage phikF77]
 gi|225594859|emb|CAX63144.1| hypothetical protein [Pseudomonas phage phikF77]
          Length = 348

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 70/194 (36%), Gaps = 27/194 (13%)

Query: 2   ATLFIDFETRSPID-------LTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDPV- 52
             L +D ET SPI+           G+ +   D  ++ F   +     V   DC  DP+ 
Sbjct: 94  KVLSLDIET-SPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDCQGDPLD 152

Query: 53  ---MPQVLKEALENTDVTIVAHNSYFERTVLKA--CFNLDIPI--HRWICTLVLARSNGL 105
              +   L + L+  D+ IV +   F+   + A    N   P    + I TL++A+    
Sbjct: 153 DMHLLVALHKLLDEADIIIVQNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQ--- 209

Query: 106 PSALKAVGEALKLSSQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                     L+  + K     K L  +F        L+     ++ EAW     Y   D
Sbjct: 210 --QFAFTSRKLEYMTHKACTIKKRLHGKF----PGFDLWAACLQDNPEAWEEMRLYNIDD 263

Query: 165 VTVTREIFKRLEPL 178
           V    E++  + P 
Sbjct: 264 VRSMEELYILMRPW 277


>gi|167600469|ref|YP_001671968.1| hypothetical protein PPLUZ19_gp24 [Pseudomonas phage LUZ19]
 gi|161168332|emb|CAP45496.1| hypothetical protein [Pseudomonas phage LUZ19]
          Length = 348

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 70/194 (36%), Gaps = 27/194 (13%)

Query: 2   ATLFIDFETRSPID-------LTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDPV- 52
             L +D ET SPI+           G+ +   D  ++ F   +     V   DC  DP+ 
Sbjct: 94  KVLSLDIET-SPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDCQGDPLD 152

Query: 53  ---MPQVLKEALENTDVTIVAHNSYFERTVLKA--CFNLDIPI--HRWICTLVLARSNGL 105
              +   L + L+  D+ IV +   F+   + A    N   P    + I TL++A+    
Sbjct: 153 DMHLLVALHKLLDEADIIIVQNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQ--- 209

Query: 106 PSALKAVGEALKLSSQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                     L+  + K     K L  +F        L+     ++ EAW     Y   D
Sbjct: 210 --QFAFTSRKLEYMTHKACTIKKRLHGKF----PGFDLWAACLQDNPEAWEEMRLYNIDD 263

Query: 165 VTVTREIFKRLEPL 178
           V    E++  + P 
Sbjct: 264 VRSMEELYILMRPW 277


>gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
 gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
          Length = 206

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 27/174 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAH 71
           ID    G+  + +   + L      D   +L              L   L +  +T + H
Sbjct: 22  IDTETMGLNPFRD--RLCLVQLSNGDGSADLVQIPQGADATTAPNLTRLLADPAITKLFH 79

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELI 130
              F+  VL+  F   +      CT + +R                + +     G K+L+
Sbjct: 80  FGRFDIAVLQHTF--HVMPQPVWCTKIASRL---------------VRTYTDRHGLKDLL 122

Query: 131 ARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                 +    +   D    +  +A      Y   DV     +  +LE + ++E
Sbjct: 123 RETINVDISKQQQSSDWGAKDLSDAQ---LAYAASDVLHLHAVKAKLEEMLARE 173


>gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686]
 gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
 gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
          Length = 205

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++     D      L + L++  +T + H  
Sbjct: 23  IDTETLGLNPHRDRLCV--VQISPGDGTADVIQIEADQKKAPNLVKLLKDRSITKIFHFG 80

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +S  K ++  +  A
Sbjct: 81  RFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEICSELLDVSISKQQQSSDWAA 140

Query: 132 R 132
            
Sbjct: 141 E 141


>gi|256848055|ref|ZP_05553499.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715115|gb|EEU30092.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 178

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 21/143 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGI-------CKYAEDVCVIL-----FAFG-FDDHPVELWDC 47
           M  + +DFET SP   + C +        +  ++   ++     F +     H +   D 
Sbjct: 1   MNFIAMDFETASPKRYSACSLSLAIVRDNQIVDEFYSLINPQTPFNWRNIQIHGIHERDV 60

Query: 48  VHDPVMPQVLKE--ALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P+ P+V K        D  ++AHN+ F+ +VLK     + +  P ++ + TL  ++ 
Sbjct: 61  ANAPIFPEVWKHIAPFYTPDKLVIAHNATFDNSVLKNTLEHYKITPPAYQTLDTLRTSQK 120

Query: 103 N--GLP-SALKAVGEALKLSSQK 122
               LP   L  V +ALK+    
Sbjct: 121 LLPRLPNHKLNTVADALKIELNH 143


>gi|158425553|ref|YP_001526845.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158332442|dbj|BAF89927.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 27/173 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLKEALENTDVTIVA 70
           ID    G+  + + +CV        D   ++            P  L   L + +V  + 
Sbjct: 22  IDTETLGLKPHRDRLCV--VQLSNGDGTADVVQIPAGATAESAP-NLVRMLADPNVVKLF 78

Query: 71  HNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKE 128
           H   F+  VL   F +   P+        L R+      L   V E L +   K ++  +
Sbjct: 79  HFGRFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLKDLVRELLGVDLSKQQQSSD 138

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
             A                    E       Y   DV       ++LE + ++
Sbjct: 139 WAA-------------------SELTDAQLAYAASDVLHLHACKEKLEAMLAR 172


>gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
 gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
          Length = 204

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 24/173 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+        V L      +    L     D   P  L++ + +  V  + H +
Sbjct: 22  VDTETMGLV--CRRDRVCLVQLSAGNGDAHLVKFDGDYSAP-NLRKVISDPGVLKIFHFA 78

Query: 74  YFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+   ++  F +   P +       L R+      LK +  E L +   K ++  +   
Sbjct: 79  RFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDLCYELLGVKINKAQQSSDWGR 138

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                E                      Y   DV     I K+L+ +  +E++
Sbjct: 139 EVLTAEQLS-------------------YAAADVIYLHAIKKKLDMMLEREEK 172


>gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
 gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
          Length = 205

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L + L++  +T + H  
Sbjct: 23  IDTETLGLNPHRDRLCV--VQISPGDGTADVIQIEAGQKKAPNLVKLLKDRSITKIFHFG 80

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +S  K ++  +  A
Sbjct: 81  RFDLAVLAQAFGTMPQPVFCTKIASKLTRTYTDRHGLKELCNELLDVSISKQQQSSDWAA 140

Query: 132 R 132
            
Sbjct: 141 E 141


>gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13]
 gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653]
 gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653]
          Length = 205

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + +   + +      D   ++            L + L++  +T + H  
Sbjct: 23  IDTETLGLNPHRD--RLCMVQISPGDGTADVIQIEAGQKKAPNLVKLLKDRSITKIFHFG 80

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  VL   F  +  P+        L R+      LK +  E L +S  K ++  +  A
Sbjct: 81  RFDLAVLANAFGTMPQPVFCTKIASKLTRTYTDRHGLKEICSELLDVSISKQQQSSDWAA 140

Query: 132 R 132
            
Sbjct: 141 E 141


>gi|320354277|ref|YP_004195616.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122779|gb|ADW18325.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 995

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 28/177 (15%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP 106
            +       L E L   D+ +  +N  F+  VL A  N D+ +   +     ++   G  
Sbjct: 836 TYTEATVGALIERLFALDLVVGFNNKRFDNKVLSAYTNRDLGLLPSFDLLEAISGLLGYR 895

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            +L  + E   L  +K   G E +  F +GE                      YC+ DV 
Sbjct: 896 LSLDRLAEKT-LRVKKEGNGLEALRWFKRGE----------------MEKLAAYCRKDVE 938

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRG--YCVDVALAHTLNQIVDVERTKLDQE 221
           +TR++F          ++ + L Q  N  G    + V    ++ QI+D     L   
Sbjct: 939 ITRDLF------LYGCRQQYLLFQ--NKAGQEVRLPVDFIQSIEQILDQRERMLRAR 987


>gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31]
          Length = 238

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLA- 100
               P   ++    LE   D  ++AHN+ F+R+     L+ C    +P  RW+ TL +A 
Sbjct: 65  LTGKPKFHEIADAFLEFVGDSPVIAHNAAFDRSFVNFELEKCNRGPLPESRWVDTLAMAK 124

Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            R  G+ ++L A+ +  K+S    ++   LI
Sbjct: 125 KRFPGMYNSLDALCKRFKISLDSRDKHGALI 155


>gi|89067364|ref|ZP_01154877.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
 gi|89046933|gb|EAR52987.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
          Length = 203

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 35/177 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV+       D    L            L   LEN DV  + H  
Sbjct: 22  IDCETMGLNPHRDRLCVVQM--SGGDGHAHLVQVAKGQTSAPNLVAMLENPDVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR-------SNGLPSAL-KAVGEALKLSSQKMEE 125
            F+   L   F          CT + ++        +GL   L   VG  +    Q+ + 
Sbjct: 80  RFDIAALMNAFGARTAP--VYCTKIASKLVRTFTDRHGLKVLLQDLVGVDVSKHQQQSDW 137

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           G E ++                           +Y   DV     + ++L+ + ++E
Sbjct: 138 GAETLS-----------------------DAQLDYAASDVLHLHRLREKLDEMLARE 171


>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
          Length = 388

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 19/166 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L         V +        +  +  E + N +V  V H +  +  ++     L 
Sbjct: 35  PELCLVQMASPTLEVLVDPLAKGIDLTPMF-ELMANPNVVKVFHAARQDIEIIYHLGGLI 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
              H    T V A   G   ++       K+ + ++++         +  T + L     
Sbjct: 94  --PHPIFDTQVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQL----- 146

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                      +Y   DVT  R+++  L+    +E    +L + +N
Sbjct: 147 -----------DYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMN 181


>gi|296446798|ref|ZP_06888736.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
 gi|296255673|gb|EFH02762.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
          Length = 204

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 25/174 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + +   + L      +   +L            L+  L N +V  + H  
Sbjct: 22  IDTETLGLNPHRD--RLCLVQLSGGNGDADLVRIAPGQTRAPNLEALLANPNVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIAR 132
            F+  V+   F +        CT + ++                + +     G K+L+  
Sbjct: 80  RFDIAVMAKTFGVMAEP--VYCTKIASKL---------------IRTYTDRHGLKDLVRE 122

Query: 133 FCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
               E    +   D       +A      Y   DV     + ++L+ + ++E  
Sbjct: 123 LLGVEISKQQQSSDWGADTLSDAQ---LSYAASDVLYLHALREKLDVMLAREHR 173


>gi|16579840|gb|AAL26655.1| unknown [Staphylococcus aureus]
          Length = 187

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q L   +R + +L  I T      T + + LQ +   V+  ++ S+ KK+   D    E 
Sbjct: 23  QALSGTNRLYTQLSLIGTRTHRITTKNFN-LQGLPKAVQHTILPSKFKKVYTIDFNSFEP 81

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
            V+A+M  +   +      + LY    +         ++ + R   K   +     GG
Sbjct: 82  SVVAYMTQDSKLIDFLNQKDGLYDALLSEL------GLSDELRVFVKRAFIGSFLFGG 133


>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
 gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
          Length = 373

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 21/157 (13%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLV 98
               + D +     P  L    ++  V  + H++  +  V +     L +P+     T  
Sbjct: 55  GTAWMIDPLKIED-PAPLANLFKDAGVIKILHSASEDLEVFQRWLGVLPLPLF---DTQK 110

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            A   GL   L      L+L ++ + +G+       +  T                    
Sbjct: 111 AAALVGLDFGLGYRSMVLELCNEDLPKGETRSDWLQRPLTESQ----------------C 154

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
            Y   DV    + ++ +       Q   ++ +   + 
Sbjct: 155 HYAAQDVIWLLDAYQIIAERCHSMQRYDWVLEDGEEA 191


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 32/145 (22%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD 50
           E  + +D+   G+ +  +D  V    +  D                    PV +     +
Sbjct: 17  EGYAVVDVETTGLAR--DDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSE 74

Query: 51  -----PVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                P+ P++  E     D   +VAHN+ F+ ++L   +    +  P+ R +CT+ LA+
Sbjct: 75  VLEGAPLFPEIAGELSRRLDGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAK 134

Query: 102 SNGLPSA---LKAVGEALKLSSQKM 123
              LP     L+ +     +  ++ 
Sbjct: 135 ELALPLPNHKLETLAAHFGVEQRRA 159


>gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4]
          Length = 299

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 89/272 (32%), Gaps = 54/272 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF----------------DDHPVELWDC 47
           L +DFET         G   Y E++      + +                D  P  L + 
Sbjct: 21  LAMDFETVGD----NGGTDMYREEISGFSLTYRYKGEIINGYVPMRHREEDGSPSHL-NI 75

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
            +     + +K   E+   T+  HN+ F+  + KA   +  P      TL+L        
Sbjct: 76  ANVKWAEEGIKRVFESDKATVW-HNATFDMGLAKASLGI-APRTPVHDTLILMHLLDE-- 131

Query: 108 ALKAVGEALKLSSQKMEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                     L S ++   K L  RF     +T E ++ +N      A  +   Y   D 
Sbjct: 132 ---------DLPSYQL---KVLATRFLNIPSDTFEEMFGKNAKFADIAVEIARWYAGKDT 179

Query: 166 TV-----TREIFKRLEPLSSKEQELWYLDQ--------TINDRGYCVDVALAHTLNQIVD 212
            V       ++    +P  +K ++++   +         +   G+ +++       +  +
Sbjct: 180 YVGFLLFEWQLNILNKPSFAKIKKVYERIERPCIMATFEMESEGFHINMEEVEVQRKESE 239

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
            E  ++   L++    +        +L   L+
Sbjct: 240 AELEEISARLQARFGDVNF--SSPSQLLKLLY 269


>gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 204

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    L            L   LE+ +V  + H  
Sbjct: 22  IDCETMGLHPHRDRLCV--VQLSGGDGHAHLVQIGKGQTEAPNLCALLEDPEVLKLFHFG 79

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+   ++  F     P++       L R+      L  +  E L     K ++  +   
Sbjct: 80  RFDIAAMQNAFGAKTAPVYCTKIASRLVRTFTDRHGLAKLCQELLGTDISKQQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                               +  +   +Y   DV    ++  +L  +  +E
Sbjct: 138 -----------------GAAQLTQAQIDYAASDVLYLHQLRDKLNAMLIRE 171


>gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 494

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 65  DVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +VAHN+ F+ T +        ++ P+  + C+L L+RS+ L      L  V +AL +
Sbjct: 205 DLPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSLALSRSSRLKFHNHRLPTVAQALGV 264

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
             +K  +  E     C G T E    +N   H+  +  F  
Sbjct: 265 ELRKHHDATEDARA-CAGITIELARRQN---HQGGFIDFIH 301


>gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
          Length = 569

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 65  DVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +VAHN+ F+ T +        ++ P+  + C+L L+RS+ L      L  V +AL +
Sbjct: 280 DLPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSLALSRSSRLKFHNHRLPTVAQALGV 339

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
             +K  +  E     C G T E    +N   H+  +  F  
Sbjct: 340 ELRKHHDATEDARA-CAGITIELARRQN---HQGGFIDFIH 376


>gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2]
 gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2]
          Length = 204

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 31/179 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           ID ET   +     G  +        L      D   +L            L   L +  
Sbjct: 22  IDTETMGLVP----GRDRLC------LVQLSRGDGSADLVQIAPAQTAAPNLTRLLADPA 71

Query: 66  VTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKM 123
           V  + H + F+  VL   F +   PI+       LAR+      LK +  E L +   K 
Sbjct: 72  VEKLFHFARFDIAVLYKTFGVMTGPIYCTKIASKLARTYTDRHGLKDLARELLGIELSKQ 131

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           ++                  D       EA      Y   DV     +  +L+ +  +E
Sbjct: 132 QQSS----------------DWGGDILSEAQ---LAYAASDVLHLHALRTKLDAMLERE 171


>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 19/166 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L         V +        +  +  E + N +V  V H +  +  ++     L 
Sbjct: 35  PELCLVQMASPTLEVLVDPLAKGIDLTPMF-ELMANPNVVKVFHAARQDIEIIYHLGGLI 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
              H    T V A   G   ++       K+ + ++++         +  T + L     
Sbjct: 94  --PHPIFDTQVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQL----- 146

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                      +Y   DVT  R+++  L+    +E    +L + +N
Sbjct: 147 -----------DYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMN 181


>gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 62/174 (35%), Gaps = 20/174 (11%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD-IPI 90
           L    F+D    L    +D   P  L++ L + ++T + H + F+ +++        +P 
Sbjct: 40  LIQLSFNDGNAHLIQFKNDYAAP-NLRKILGDKNITKIFHFARFDVSIICYYLETWALPC 98

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           +       L R+     +LK +   L+L   K+ + ++      +  T +          
Sbjct: 99  YCTKIASRLVRTYTDNHSLKELC--LELLDTKLNKQQQSSDWGSENLTDKQ--------- 147

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                    Y   DV    +I ++L+ +  +E       +        V++ L 
Sbjct: 148 -------KSYAASDVLYLHKIKEKLDLMLERENRKELAQKCFEFLPIRVELDLM 194


>gi|90580077|ref|ZP_01235885.1| hypothetical ribonuclease D [Vibrio angustum S14]
 gi|90438962|gb|EAS64145.1| hypothetical ribonuclease D [Vibrio angustum S14]
          Length = 375

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 36/208 (17%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D +    M + L   L +  V  V H    +  V +              T
Sbjct: 47  FDGEQLSLIDPLEVEDM-EPLWALLRDQSVIKVLHACGEDLEVFQHHAG--CLPTPMFDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +        +    ++++G+       +  T + L              
Sbjct: 104 QLMAAFLGHGISTGFGTLVKEYVGVELDKGEARTNWLARPLTEKQL-------------- 149

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
             +Y   DV         L+PL         L   + +RGY    AL      ++     
Sbjct: 150 --DYAAADVYY-------LKPLFES------LLAKVEERGYM--EALQQECESVMHRRIK 192

Query: 217 KLDQELE--SLTYGLVSSSRCLEKLKTW 242
            +D E     +      + + L  L+  
Sbjct: 193 PVDPEKAYLDIKNAWQLNPQQLAVLQKV 220


>gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 236

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 43  ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICT 96
             W+ + D      + +   +   D T+VAHN+ F+   +      C    IP  R+I T
Sbjct: 61  HTWEMLKDEPKFAEIVDQFLDFIEDSTLVAHNAMFDMGFINMELERCGKPIIPKARFIDT 120

Query: 97  LVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELI 130
             +AR    G P++L A+ +   +S     +   LI
Sbjct: 121 AAIAREKFPGAPASLDALCKRFDVSLDSRTKHGALI 156


>gi|327270331|ref|XP_003219943.1| PREDICTED: myomegalin-like [Anolis carolinensis]
          Length = 2297

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 39/218 (17%)

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L    Q ++E KEL+    K + +    D+         RL       D  + R + ++ 
Sbjct: 731 LNFKEQLIQESKELLLYLQKRDNNSSSSDK------MVQRLQQRIKDRDAALERAVDEKF 784

Query: 176 EPLSSKEQELWYL-------DQTIND-----RGYCVDVALAHTLNQIVDVERTKLDQELE 223
             L  +EQEL  L       +Q +        G  V +     + +  D+E   L    +
Sbjct: 785 CILEDREQELHQLRLSVKEQEQDLERLHQVLSGNKVTIQDLENMLKAKDLELEHLLATYQ 844

Query: 224 SLT--YGLVSSSRCL---------EKLK----------TWLFLETGLHLEDLTETTCQRV 262
           +L      + +  C          ++L+            L       L      T + +
Sbjct: 845 NLQWLKDEIEAKSCRWQSEQGGIIQQLQTALHDRNKEVEVLSATLLCKLVPGQRDTVEEL 904

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
                K      ++ +++   +   V +L  L++A++S
Sbjct: 905 YFRLHKKEKIIEELLHDKSLQTIEQVTELQELLQAVSS 942


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
 gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 331

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 32/145 (22%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD 50
           E  + +D+   G+ +  +D  V    +  D                    PV +     +
Sbjct: 17  EGYAVVDVETTGLAR--DDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSE 74

Query: 51  -----PVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                P+ P++ +E     D   +VAHN+ F+ ++L   +    +  P+ R +CT+ LA+
Sbjct: 75  VLEGAPLFPEIAEELSRRLDGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAK 134

Query: 102 SNGLPSA---LKAVGEALKLSSQKM 123
              LP     L+ +     +  ++ 
Sbjct: 135 ELALPLPNHKLETLAAHFGVEQRRA 159


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 25/123 (20%)

Query: 11  RSPIDLTKCGICK---------YAEDVC-------VILFAFGFDDHPVELWDCVHD---- 50
            + +D+   G+ +         Y  D           L     D  PV +     +    
Sbjct: 26  YAVVDVETTGLARDDRIVSAAVYQLDARGAVQDHWYTLVNPQRDPGPVWIHGLTEEVLEG 85

Query: 51  -PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLD---IPIHRWICTLVLARSNGL 105
            P  P++  E  E   D  +VAHN+ F+ ++L   +       P+ + +CT+ L++  GL
Sbjct: 86  APRFPEIAGELAERLADRVLVAHNAAFDWSMLAREYARSKSAAPVRQRLCTIALSKELGL 145

Query: 106 PSA 108
           P  
Sbjct: 146 PLP 148


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 18/150 (12%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHR--WICT 96
           VEL        + + L++ L       VAHN  F+   L         DIP++    +CT
Sbjct: 74  VELIHAPEFEGIARELRDLL--AGRVFVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCT 131

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           + L+RS     +L        + ++                    L  R      E W  
Sbjct: 132 MKLSRSLIGVGSLADCCREFGIDNEDAHSA------LSDAHATALLLGRLMDADPE-WS- 183

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
                +  +    E  +    L+S E+  W
Sbjct: 184 ---GWRRRLDAAEEAGEHWPELTSFERREW 210


>gi|13928294|dbj|BAB46986.1| hypothetical protein [Staphylococcus aureus]
          Length = 344

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 9/133 (6%)

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            + +  +    +    N    +R + +L  I T      T + + LQ +   V+  ++ S
Sbjct: 101 HSDKIEKLFDRLEQALN--GTNRLYTQLSLIGTRTHRITTKNFN-LQGLPKAVQHTILPS 157

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           + KK+   D    E  V A+M  +   +      + LY    +         ++ + R  
Sbjct: 158 KFKKVYTVDFKSFEPSVAAYMTQDSKLIDLLNQKDGLYDALLSEL------GLSDELRVF 211

Query: 432 GKVMELALGYQGG 444
            K   +     GG
Sbjct: 212 VKRAFIGSFLFGG 224


>gi|56417079|ref|YP_154153.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222475445|ref|YP_002563862.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|254995250|ref|ZP_05277440.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
 gi|255003431|ref|ZP_05278395.1| ribonuclease D (rnd) [Anaplasma marginale str. Puerto Rico]
 gi|255004550|ref|ZP_05279351.1| ribonuclease D (rnd) [Anaplasma marginale str. Virginia]
 gi|56388311|gb|AAV86898.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222419583|gb|ACM49606.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 204

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 24/171 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+        V L      D    L     D   P  L+  + N ++  + H +
Sbjct: 22  VDTETMGLV--CRRDRVCLVQLSSGDGDAHLVKFSGDYSAP-NLRRIVSNPEIMKIFHFA 78

Query: 74  YFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+   ++ CF +     +       L R+      LK +  E L +   K ++  +   
Sbjct: 79  RFDVAAIRHCFGMWAVPCYCTKIASRLVRTYTNHHGLKDLCYELLGVKINKAQQSSDWGR 138

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                E                      Y   DV    +I K+L+ +  +E
Sbjct: 139 EVLTSEQLS-------------------YAAADVIYLHDIKKKLDMMLERE 170


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 32/145 (22%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD 50
           E  + +D+   G+ +  +D  V    +  D                    PV +     +
Sbjct: 19  EGYAVVDVETTGLAR--DDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSE 76

Query: 51  -----PVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                P+ P++ +E     D   +VAHN+ F+ ++L   +    +  P+ R +CT+ LA+
Sbjct: 77  VLEGAPLFPEIAEELSRRLDGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAK 136

Query: 102 SNGLPSA---LKAVGEALKLSSQKM 123
              LP     L+ +     +  ++ 
Sbjct: 137 ELALPLPNHKLETLAAHFGVEQRRA 161


>gi|241956434|ref|XP_002420937.1| DNA polymerase gamma subunit, putative; mitochondrial DNA
           polymerase catalytic subunit, putative [Candida
           dubliniensis CD36]
 gi|223644280|emb|CAX41091.1| DNA polymerase gamma subunit, putative [Candida dubliniensis CD36]
          Length = 1329

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 54/188 (28%), Gaps = 25/188 (13%)

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +P  +       +   +   + ++       I   ++S + A +G   V AD+   E  
Sbjct: 698 IIPNLATMGTITRRATENTWLTASNAKK--NRIGSELKSLIEAPKGYCFVGADVDSEELW 755

Query: 388 VLAWMAGEQ-----------WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + A + G+            W     E  +  DL+  T +    ++        R   KV
Sbjct: 756 I-ASLVGDSMLQIHGGTALGWMTLEGEKSQKTDLHSKTAS-ILGIS--------RNDAKV 805

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                 Y  G K   ++      N+             +  +      +++         
Sbjct: 806 FNYGRIYGAGVKFATRLLKQFNGNITDEEADKVARQLYDSTKGRTAMTKYLPSKIYYGGT 865

Query: 495 EDLFIGTA 502
           E +   T 
Sbjct: 866 ESIMFNTL 873


>gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L   LE+  +T + H  
Sbjct: 24  IDTETLGLQPHRDRLCV--VQLSSGDGTADIIQIAKGQNSAPNLVTLLEDKTITKIFHFG 81

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR----SNGLPSALKAVGEALKLSSQKMEEGKEL 129
            F+  +L   F   +      CT + ++            +   E L ++  K ++  + 
Sbjct: 82  RFDLAILAHTFG--VMPDAVFCTKLASKLTRTYTDRHGLKEICSELLNVNISKQQQSSDW 139

Query: 130 IA 131
            A
Sbjct: 140 AA 141


>gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 895

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 100/349 (28%), Gaps = 94/349 (26%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMP------------ 54
           T + +DL   G  K  +D+  I   F      V  +         + P            
Sbjct: 5   TYAVVDLETTGNQKDYDDIIQIGITFVKGFEIVGSYHSLIKTDLEIPPFIQALTSIEDQM 64

Query: 55  -----------QVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT---- 96
                      + + E ++++    VAHN  F+ T LK  F   N+     + I T    
Sbjct: 65  LTQAPYFNEVAEEIYELMKDS--VFVAHNVAFDLTFLKKAFKKSNITYQPRKVIDTVELF 122

Query: 97  ------------LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                         LA  + +P        A +         K +I  F        LY 
Sbjct: 123 KIAFPTDKSYQLSELAEYHDIPLE-----NAHRADEDAATTAKLMIKAF------NVLYT 171

Query: 145 RNKPNHREAWRLFGEYCKG----DVTVTREIFKRLEPLSSK----EQELW---------- 186
              P        +          DV       +  EPL +K    EQ ++          
Sbjct: 172 --LPTDTLKQLFYLSKNLKYQLHDVIFEMVRQRGTEPLDNKYEKFEQIIYKKQVDFKSPQ 229

Query: 187 ---------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                    + +Q I+  GY            + +    +L    ++L    + S + L 
Sbjct: 230 IDFEGTTEDFYNQVIDALGY----TFRPQQLYLAETILDQLMHSEKALIEAPLGSGKSLA 285

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSS--NKKLTPQAIQVFNNRMRAS 284
            L   L          +  +T  ++L +   +   P   QV   R+ A+
Sbjct: 286 YLIAALMYNIETKQHVMI-STNTKLLQNQLLEHDIPTLEQVLGYRINAA 333


>gi|304379977|ref|ZP_07362706.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|14021052|dbj|BAB47676.1| hypothetical protein [Staphylococcus aureus]
 gi|27529902|dbj|BAC53839.1| hypothetical protein [Staphylococcus aureus]
 gi|166197579|dbj|BAG06188.1| hypothetical protein [Staphylococcus aureus]
 gi|205825351|dbj|BAG71442.1| hypothetical protein [Staphylococcus aureus]
 gi|221148468|gb|ACL99829.1| hypothetical protein [Staphylococcus pseudintermedius]
 gi|238768493|dbj|BAH66805.1| hypothetical protein [Staphylococcus aureus]
 gi|269939553|emb|CBI47912.1| hypothetical protein SATW20_00300 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|283469258|emb|CAQ48469.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|288551798|gb|ADC53394.1| hypothetical protein [Staphylococcus aureus]
 gi|288964699|gb|ADC79456.1| hypothetical protein [Staphylococcus aureus]
 gi|304341557|gb|EFM07467.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|329315338|gb|AEB89751.1| hypothetical protein SAT0131_02880 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 366

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 9/133 (6%)

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            + +  +    +    N    +R + +L  I T      T + + LQ +   V+  ++ S
Sbjct: 101 HSDKIEKLFDRLEQALN--GTNRLYTQLSLIGTRTHRITTKNFN-LQGLPKAVQHTILPS 157

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           + KK+   D    E  V A+M  +   +      + LY    +         ++ + R  
Sbjct: 158 KFKKVYTVDFKSFEPSVAAYMTQDSKLIDLLNQKDGLYDALLSEL------GLSDELRVF 211

Query: 432 GKVMELALGYQGG 444
            K   +     GG
Sbjct: 212 VKRAFIGSFLFGG 224


>gi|195342678|ref|XP_002037927.1| GM18533 [Drosophila sechellia]
 gi|194132777|gb|EDW54345.1| GM18533 [Drosophila sechellia]
          Length = 3967

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 83/217 (38%), Gaps = 12/217 (5%)

Query: 112  VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            VGE L L    + +         + + +      +  N  + W+               I
Sbjct: 3186 VGEVLNLVEMLLNDADSW-----RTQVNTSGLAASAQNLEQRWKNVCSQSAERKARILSI 3240

Query: 172  FKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +  L+ L   + E + W   Q     G+  D          ++  + +L  +LE L    
Sbjct: 3241 WNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSK--HKLEERQKELRAKLEELESQS 3298

Query: 230  VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSA 287
            V + R LE++   L +  G+  E++ + T     ++S  ++LTP+   + +   + ++  
Sbjct: 3299 V-NLRQLEQIYAKLTMSAGVEPENIQKLTLPTKVMVSMWRQLTPRCHALLDAIDKDAKLM 3357

Query: 288  VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                N  +EA NS   ++ TL+ L ++   + S    
Sbjct: 3358 REFNNAQLEATNSLNAIQKTLEQLPSAEDQQTSKAEP 3394


>gi|113927236|emb|CAL22880.1| hypothetical protein ZH05 [Staphylococcus aureus]
          Length = 366

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 9/133 (6%)

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            + +  +    +    N    +R + +L  I T      T + + LQ +   V+  ++ S
Sbjct: 101 HSDKIEKLFDRLEQALN--GTNRLYTQLSLIGTRTHRITTKNFN-LQGLPKAVQHTILPS 157

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           + KK+   D    E  V A+M  +   +      + LY    +         ++ + R  
Sbjct: 158 KFKKVYTVDFKSFEPSVAAYMTQDSKLIDLLNQKDGLYDALLSEL------GLSDELRVF 211

Query: 432 GKVMELALGYQGG 444
            K   +     GG
Sbjct: 212 VKRAFIGSFLFGG 224


>gi|297476119|ref|XP_002688485.1| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
 gi|296486338|gb|DAA28451.1| polymerase (DNA directed) nu [Bos taurus]
          Length = 158

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 596 KLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDT--DEFNA 644
           +    +VQ  + D+    M+    A          ++  +HDE++ E  D+   EF A
Sbjct: 24  QAANFVVQGSAADLCKMAMIRIFTAMATSPTLTARLLAQIHDELLFEVEDSQVPEFTA 81


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 63/181 (34%), Gaps = 43/181 (23%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVE---------------LW------DCV 48
            + +D+   G+ +  +D  +    +  D    VE               +W      D +
Sbjct: 22  YAVVDVETTGLAR--DDRIISAAVYRLDARGEVEDHWYTMVNPERDPGPVWIHGLTSDVL 79

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN 103
               + + +     +   D  +VAHN+ F+ +++   +       P+ + +CT+ L++  
Sbjct: 80  EGAPLFEDIAAEFASRLADRVLVAHNAVFDWSMIAREYARAKSQAPVRQRLCTIALSKEL 139

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
           GLP           L + K+E    L A F   +        +     EA+R        
Sbjct: 140 GLP-----------LPNHKLES---LAAHFGVVQQRAHHALDDARVLAEAFRPSLHAAAR 185

Query: 164 D 164
           D
Sbjct: 186 D 186


>gi|310765417|gb|ADP10367.1| DNA topoisomerase III [Erwinia sp. Ejp617]
          Length = 670

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 114/409 (27%), Gaps = 77/409 (18%)

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR--PSRSH 336
            R+  S    L +   ++ +   G   G       +  GR         NL R    R+ 
Sbjct: 125 QRLWLSSLDELSIRAALQNLRPGGETLGMYH----AGLGRARADWLTGMNLSRLYTLRAA 180

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E     +  +    +     +      + +  +     + V A L+       A      
Sbjct: 181 EAGFDGVVSVGRVQSPTLALVVRRDREI-AAFVPKPYWQ-VKAQLSAGGITFPAQWV--P 236

Query: 397 WKLKAFETGEDLYVTTYARSFNV----APAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
            K+   E    ++     +   +      A VT+ +    K    +          Q+ A
Sbjct: 237 AKVYTDEEKRCIHQNIAQQVVQICRQSGEATVTECETKREKA---SPPLAFSLGTLQQAA 293

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           S   L   +   ++ T  +  E   A ++ R      PE   E++        +  A  +
Sbjct: 294 SR--LWDMSPQQVLDTAQSLYEKHKATSYPRTDCGYLPESMREEI------PALLDAIGR 345

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARK--------------RRDVPLVYMKKDKNNL 558
                  L ++L  +    I N K I A                      VYM   +N L
Sbjct: 346 TDPECLPLLSQLDASLVSRIWNDKKITAHHGIIPTRNAFQLSALSETERQVYMLIRRNYL 405

Query: 559 ILMLPSGRSLVYR---DVGNNR---SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
              LP   S + R   D+G      +      +     +   GK  E   +  + D    
Sbjct: 406 AQFLPLHESDITRLAFDIGGQLFRTTGRTEVVKGWKVLF---GKAEE---EGSAAD---- 455

Query: 613 GMMNATKAGYDIVLTVHDEIVCETP-----DTDEFNASMLYHLMTSNPS 656
                            DE V   P     D      + +  LMT  P+
Sbjct: 456 -----------------DEAVVALPPLKKDDRCGVTGAEVVQLMTRPPA 487


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 18/150 (12%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHR--WICT 96
           VEL        + + L++ L       VAHN  F+   L         DIP++    +CT
Sbjct: 63  VELIHAPEFEGIARELRDLL--AGRVFVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCT 120

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           + L+RS     +L        + ++                    L  R      E W  
Sbjct: 121 MKLSRSLIGVGSLADCCREFGIDNEDAHSA------LSDAHATALLLGRLMDADPE-WS- 172

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
                +  +    E  +    L+S E+  W
Sbjct: 173 ---GWRRRLDAAEEAGEHWPELTSFERREW 199


>gi|321252611|ref|XP_003192466.1| gamma DNA-directed DNA polymerase [Cryptococcus gattii WM276]
 gi|317458934|gb|ADV20679.1| Gamma DNA-directed DNA polymerase, putative [Cryptococcus gattii
            WM276]
          Length = 1429

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 27/207 (13%)

Query: 327  QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
              LP+         + +     + ++       +   +++ V A  G  +V AD+   E 
Sbjct: 1019 MILPQVITMGTVTRRAVEATWLTASNAKK--NRVGSELKAMVRAPPGYSIVGADVDSEEL 1076

Query: 387  RVLAWMAGEQ-WKLKAFE-----------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
             + + M   Q     A              G DL+  T      ++        R   KV
Sbjct: 1077 WISSVMGDSQFGMHGATAIGWMTLEGNKSAGTDLHSKTA-NILGIS--------RDAAKV 1127

Query: 435  MELALGYQGGAKAFQKMA--STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE- 491
               +  Y  G K   ++     + L   T   L        +   A         + P  
Sbjct: 1128 FNYSRIYGAGKKHAVQLLLQGDSKLTKETAGKLADNLYKSTKGAKAVRARNLPLASLPSL 1187

Query: 492  -HAIEDLFIGTACERVKKAWRQKHSRV 517
             H   + ++    E +  + R     +
Sbjct: 1188 WHGGSESYLFNTLEAIALSDRPTTPAL 1214


>gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L   LE+  +T + H  
Sbjct: 24  IDTETLGLQPHRDRLCV--VQLSPGDGTADIIQIAKGQNSAPNLVTLLEDKTITKIFHFG 81

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR----SNGLPSALKAVGEALKLSSQKMEEGKEL 129
            F+  +L   F   +      CT + ++            +   E L ++  K ++  + 
Sbjct: 82  RFDLAILAHTFG--VMPDAVFCTKLASKLTRTYTDRHGLKEICSELLNVNISKQQQSSDW 139

Query: 130 IA 131
            A
Sbjct: 140 AA 141


>gi|126724660|ref|ZP_01740503.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
 gi|126705824|gb|EBA04914.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
          Length = 203

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 46/170 (27%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    +   + L      D    +            L   L + +V  + H  
Sbjct: 22  IDCETMGLNPIRD--RLCLIQMSNGDGNAHMVQVEKGQTEAPNLCRMLADPNVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   +   F +        CT + ++                +L    + + +++   
Sbjct: 80  RFDIAAMHNAFGVLTEP--VYCTKIASKMVRTYTDRHGLRNLLQELLKVDISKFQQMSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
             +  T   L                +Y   DV     +  RL  L  +E
Sbjct: 138 GAETLTKAQL----------------DYAASDVLHLHRLRDRLNELLVRE 171


>gi|260428903|ref|ZP_05782880.1| 3'-5' exonuclease [Citreicella sp. SE45]
 gi|260419526|gb|EEX12779.1| 3'-5' exonuclease [Citreicella sp. SE45]
          Length = 204

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    L            L   L +  V  + H  
Sbjct: 22  IDCETMGLDPHRDRLCV--VQLSGGDGNAHLVQVARGQTEAPNLCRLLRDETVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   +   F          CT + +R                +L S  + + ++    
Sbjct: 80  RFDIAAMYHAFGALAAP--VYCTKIASRMVRTYTDRHGLKALTQELLSVDISKQQQSSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                T   L                +Y   DV    ++  RL  +  +E
Sbjct: 138 GAADLTAAQL----------------DYAASDVLYLHQLRDRLNGMLERE 171


>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 335

 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 25/123 (20%)

Query: 11  RSPIDLTKCGICK---------YAEDVC-------VILFAFGFDDHPVELWDCVHD---- 50
            + +D+   G+ +         Y  D           L     D  PV +     +    
Sbjct: 26  YAVVDVETTGLARDDRIVSAAVYQLDARGAVQDRWYTLVNPQRDPGPVWIHGLTRETLSD 85

Query: 51  -PVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSNGL 105
            P+ P +     E  D   +VAHN+ F+ +++   F     + P+ + +CT+ L++  GL
Sbjct: 86  APLFPDIATAFAERLDGRVLVAHNAAFDWSMIAREFARSKTEAPVRQRLCTIALSKELGL 145

Query: 106 PSA 108
           P A
Sbjct: 146 PLA 148


>gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f]
 gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f]
          Length = 622

 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 36  GFDDHPVELWDCVHD-----PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKA---CFNL 86
           G D  PV +     +     P    V+ E         +VAHN+ F+   L A       
Sbjct: 38  GCDPGPVHIHGLTRELLAGSPTFADVVDELASRLAGRVMVAHNASFDWRFLTAEAVRAGR 97

Query: 87  DIPIHRWICTLVLARSNGLP 106
           ++P  R +C+ VLAR   LP
Sbjct: 98  ELPTERRMCSCVLARRLDLP 117


>gi|330445493|ref|ZP_08309145.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489684|dbj|GAA03642.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 375

 Score = 41.7 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D +    M + L   L +  V  V H    +  V +            + T
Sbjct: 47  FDGEHLSLIDPLEIDDM-EPLWALLRDQSVIKVLHACGEDLEVFQHHAG--CLPTPMLDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            ++A   G   +        +    ++++G+       +  T + L
Sbjct: 104 QLMAAFLGHGISTGFGALVKEYVGVELDKGEARTNWLARPLTAKQL 149


>gi|302381884|ref|YP_003817707.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
 gi|302192512|gb|ADL00084.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
          Length = 204

 Score = 41.7 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+ ++  D   +       D    +            LK  + + DV  + H  
Sbjct: 22  VDSETMGL-RFRRDPLCV-VQLSSGDGDAHVVRLSRPDYDCPNLKRLMADRDVLKIFHFG 79

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  +++    ++  P++       LAR+      LK V  E   +   K ++  +   
Sbjct: 80  RFDIAMVELHLGVETGPVYCTKIASKLARTYTDRHGLKDVAREMAGIDLSKAQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                               E  +   +Y   DV     I +RL  +  +E
Sbjct: 138 -----------------GAAELSQAQLDYAASDVLHLHVIMRRLNEMLVRE 171


>gi|114327365|ref|YP_744522.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315539|gb|ABI61599.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 259

 Score = 41.7 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 54/190 (28%), Gaps = 32/190 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQVLK 58
            +D      ID    G+  + +   + L      D    L   V           P  LK
Sbjct: 64  SLDIGPIIAIDTETMGLNHHRD--RLCLIQISAGDGHAHLVQIVPERLGGKGADCP-NLK 120

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEA 115
             L N     + H + F+  +L+    + +      CT + A+          LK +   
Sbjct: 121 RLLSNPGCVKLMHYARFDVGILQNALGIAM--SNVKCTKIAAKLVRTFTDRHGLKDLCRD 178

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L            L     K +      D   P           Y   DV     ++ RL
Sbjct: 179 L------------LGVEISKQQQSS---DWGAPELTPEQMA---YAASDVLYLHALWNRL 220

Query: 176 EPLSSKEQEL 185
           E L  +E  L
Sbjct: 221 EGLLIREDRL 230


>gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score = 41.7 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    L            L + LE+  V  + H  
Sbjct: 66  IDCETMGLHPHRDRLCV--VQLSGGDGKAHLIQIAKGQTEAPNLCKLLEDPKVLKLFHFG 123

Query: 74  YFER-TVLKACFNLDIPIHRWICTLVLARSNGLPSALK-AVGEALKLSSQKMEEGKELIA 131
            F+   +L A      P++       L R+      L   + E L +   K ++  +   
Sbjct: 124 RFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKLLQELLAIDISKQQQSSD--- 180

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                   E L D              EY   DV    ++ + L  +  +E
Sbjct: 181 -----WGAETLTD-----------AQIEYAASDVLYLHQLREALNKMLERE 215


>gi|126734481|ref|ZP_01750228.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126717347|gb|EBA14211.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 203

 Score = 41.7 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 21/172 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + +   + L      D    L            L   LEN DV  + H  
Sbjct: 22  IDCETMGLNPHRD--RLCLIQMSGGDGDCHLVQVTPGQTAAPNLCAMLENPDVLKLFHFG 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   L   F  L  P++       L R+      LK +         +   G ++   
Sbjct: 80  RFDIAALLNAFGALTAPVYCTKIASKLVRTYTDRHGLKTL--------LQDMVGIDI--- 128

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                 H+   D   PN  +A     +Y   DV    ++ ++ + L ++E  
Sbjct: 129 ----SKHQQQSDWGAPNLTDAQ---LDYAASDVLYLHQLKEKFDVLLAREHR 173


>gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
 gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
          Length = 206

 Score = 41.7 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 53/174 (30%), Gaps = 25/174 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+    + +CV        D   ++            L   L +   T + H +
Sbjct: 24  VDTETLGLNLLRDRLCV--VQLSPGDGSADVVQIEKGMTAAPNLTALLSDPARTKIFHYA 81

Query: 74  YFERTVLKACFNLDIPIHRWI--CTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELI 130
            F+  +L+    + +    W       L R+      LK +  E L +   K ++  +  
Sbjct: 82  RFDVAILRQNLGIHVDPV-WCTKIASKLCRTYTDRHGLKDITRELLGVDISKQQQSSDWA 140

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           A                    +       Y   DV     + ++LE +  +E+ 
Sbjct: 141 AE-------------------QLTDAQLAYAASDVLHLHALKEKLEFMLRREER 175


>gi|156120453|ref|NP_001095372.1| phosphodiesterase 4D interacting protein [Bos taurus]
 gi|151553653|gb|AAI48979.1| PDE4DIP protein [Bos taurus]
 gi|296489457|gb|DAA31570.1| phosphodiesterase 4D interacting protein [Bos taurus]
 gi|315423538|gb|ADU17252.1| cardiomyopathy-associated protein 2 [Bos taurus]
          Length = 1116

 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +L    Q ++E +EL+                + N     +L       DV + R I ++
Sbjct: 604 SLSHKEQLLQEFRELLQY------RNNSDKTLEANEMLLEKLRQRIQDRDVALERAIDEK 657

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              L  KE+EL  L   + +R    D  L      +   E T    E    + GL     
Sbjct: 658 FSSLEEKEKELRQLHLAMRER----DHDLERLRGILSANEATMQSMESLLRSKGLEVEQL 713

Query: 235 CLE-KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
               +   WL  E         +     +      L  +  +V
Sbjct: 714 SATCQNLQWLKEEMETKFSRWQKEQESIIQQLQTSLHDRNKEV 756


>gi|49473901|ref|YP_031943.1| ribonuclease d [Bartonella quintana str. Toulouse]
 gi|49239404|emb|CAF25742.1| Ribonuclease d [Bartonella quintana str. Toulouse]
          Length = 206

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 8/123 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + + +CV        D   ++            L + L++  +T + H  
Sbjct: 24  VDTETLGLQPHRDRLCV--VQLSSGDGTADIIQIAKGQKSAPNLVKLLKDKAITKIFHFG 81

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR----SNGLPSALKAVGEALKLSSQKMEEGKEL 129
            F+  +L   F   +      CT + ++            +   E L ++  K ++  + 
Sbjct: 82  RFDLAILAYTFG--VMPDVVFCTKIASKLTRTYTDRHGLKEICCELLNVNISKQQQSSDW 139

Query: 130 IAR 132
            A 
Sbjct: 140 AAE 142


>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
 gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
          Length = 382

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL    +  + E VC+I       +    L D +    +   LK    +  V  V H +
Sbjct: 33  VDLEADSLHHFTEKVCLIQIGV---NGDAFLIDPLALSDL-SSLKPFFADPGVIKVLHGA 88

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            ++   L   F + I       + + +R  G+        ++  L+          + + 
Sbjct: 89  DYDVRSLYRDFGITI--TGLFDSEIASRFLGV--------QSTGLNDVVNRRFGVTMDKG 138

Query: 134 CKGETHECLYDRNKPNHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSKEQ 183
           C+ +      D  +    E    +     +  V +  ++   L+ +   E 
Sbjct: 139 CRKQ------DWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEW 183


>gi|254292595|ref|YP_003058618.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
 gi|254041126|gb|ACT57921.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
          Length = 204

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + + +CV+  + G  D  V   D          LK  + +T V  + H +
Sbjct: 22  VDTEAMGLEFHRDQLCVVQLSDGTGDEHVVRLDRKTFDCP--NLKALMSDTKVLKIFHFA 79

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+  ++K    ++  PI        LAR+      LK V   L         G ++   
Sbjct: 80  RFDVAMMKKWLGIECAPIFCTKIASKLARTYTDRHGLKDVSRELV--------GADM--- 128

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                  +   D    +  EA      Y   DV    EI ++L  +  +E
Sbjct: 129 ----SKAQQSSDWGADSLSEAQ---LAYAASDVLYLHEIREKLILMLERE 171


>gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 179

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 23/144 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICK-------YAEDVCVIL-----FAFG-FDDHPVELWDC 47
           M  + +DFET S    + C +           ++   ++     F +     H +   D 
Sbjct: 1   MNFIAMDFETASAKRFSACSLAITIVRNSQIQDEFYTLINPQTPFFWRNTQVHGIHERDV 60

Query: 48  VHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
              P  P+V   ++E     D  ++AHN+ F+ +VLK     F ++ P+++ + TL  +R
Sbjct: 61  KDAPTFPEVWEHIQEFFT-PDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQTLDTLKTSR 119

Query: 102 SN--GLP-SALKAVGEALKLSSQK 122
                 P   L  + + L +    
Sbjct: 120 QLFPAFPNHKLNTICDQLNIDLHH 143


>gi|332687228|ref|YP_004457002.1| exonuclease [Melissococcus plutonius ATCC 35311]
 gi|332371237|dbj|BAK22193.1| exonuclease [Melissococcus plutonius ATCC 35311]
          Length = 176

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 21/143 (14%)

Query: 1   MATLFIDFETRSPIDLTKCG-----------ICKY--AEDVCVILFAFGFDDHPVELWDC 47
           M  + +DFET S    + C            + +Y          F      H +   D 
Sbjct: 1   MNFIAMDFETASHERHSACSLALVKVENSRIVDEYYTLIQPETQFFWKNIQIHGIHPEDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRW--ICTLVLAR- 101
              P  P++    +     +  IVAHN+ F+  VL +C N   +P   +  +CT+  +R 
Sbjct: 61  TDAPKFPEIWQGIQLFFQLNQLIVAHNAAFDCNVLASCLNYYKLPQPNYLSLCTVKTSRK 120

Query: 102 -SNGLP-SALKAVGEALKLSSQK 122
               LP   L  +  AL +    
Sbjct: 121 FFRELPNHKLDTICRALNIPLNH 143


>gi|195427709|ref|XP_002061919.1| GK17256 [Drosophila willistoni]
 gi|194158004|gb|EDW72905.1| GK17256 [Drosophila willistoni]
          Length = 3709

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 12/162 (7%)

Query: 149  NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
              R+ W+       G + +   + + LEP+S +  +     Q IN      DV L     
Sbjct: 2551 TQRDMWKNSNTNASGALEILHNVLEILEPVSKQTPKELETAQAINR-----DVDLTQKDI 2605

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVL 263
                 +   +D  +  +   L  +    ++    L  + G  +E+L     T       +
Sbjct: 2606 TQASNQLDNVDTNIPKMAL-LADNIEIQQQNAAKLTQQLGQDIENLRRQIETARQVANNI 2664

Query: 264  SSNKKLTPQAIQVFNNRMRASRSAVL-KLNTLVEAMNSDGRL 304
                K  P  +       +A   A   K++T     +++G L
Sbjct: 2665 KVGVKFKPSTVLELKTPEKAKLLATKTKMSTFFRTNDANGFL 2706


>gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
 gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
          Length = 191

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 47  CVHDPVMPQVLKE--ALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVLA 100
               P  P++ +E   L ++ + I AHN+ F+ +VL  C         P  R+ CT  ++
Sbjct: 62  VADKPTFPELWREIGPLMDSGLLI-AHNAPFDMSVLAKCLRDYGICWHPTVRYACTCQMS 120

Query: 101 RSNGLP----SALKAVGEALKLSSQKMEEGKELIA 131
           R   LP      L  + + L L       G + +A
Sbjct: 121 RRL-LPQLPNHKLNTLSDYLGLELDHHHAGSDSMA 154


>gi|326424982|ref|YP_004286204.1| putative DNA polymerase [Pseudomonas phage phi15]
 gi|325048386|emb|CBZ41999.1| putative DNA polymerase [Pseudomonas phage phi15]
          Length = 722

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 63/255 (24%), Gaps = 65/255 (25%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTP--QAIQVFNNRMR 282
           +  S    + ++  L  + G    + T+          L       P  QA      R  
Sbjct: 327 ITFSPTSRDHIQKVL-KDAGWEPTEFTDKGAPIVDDETLEGVTVDDPVKQAAITLIQRYL 385

Query: 283 ASRSAVLKLNTLVEAM-----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             +  + +L    +A        DG + G++   GA                        
Sbjct: 386 MIQKRIGQLAEGKKAWLLYCETEDGFIHGSINPNGAG----------------------- 422

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCV------RSCVIAS-----EGKKLVVA---DLAG 383
                      +  S P+  Q+ S         R    A+      G + VV    D +G
Sbjct: 423 --------TGRATHSHPNMGQVPSAKSPYGPECRELFGAAYASHLPGWEAVVQVGRDASG 474

Query: 384 IEARVLAWMAG--EQWKLKAFETGEDLY--VTTYARSFNVAP----AQVTKDQRAIGKVM 435
           +E R L       +           D++      A            +     R   K  
Sbjct: 475 LELRCLGHFGAKFDGGAYVEQVLNGDVHWANAVAAGIAKDPVRIKGDEQHDRWRDNAKTF 534

Query: 436 ELALGYQGGAKAFQK 450
             A  Y  G     +
Sbjct: 535 IYAFLYGAGNGKIGQ 549


>gi|145593082|ref|YP_001157379.1| hypothetical protein Strop_0517 [Salinispora tropica CNB-440]
 gi|145302419|gb|ABP53001.1| hypothetical protein Strop_0517 [Salinispora tropica CNB-440]
          Length = 261

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 62/194 (31%), Gaps = 30/194 (15%)

Query: 2   ATLFIDFETRSPIDLTKC-GICK-------YAEDVCVILFAFGFDDHPVELWDCVHD--- 50
            TL+ID ET     L    G+ +             VI  A+ +     E      +   
Sbjct: 14  RTLYIDIETAPS--LAHVWGLWRQNIGLSQLLASGRVICLAWKWRGE--EGVHFASEHGQ 69

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--DIPIHRWICTLVLARSNGLP 106
               M       L   DV +  +   F+   L   F L   +P   +       R   L 
Sbjct: 70  GRDAMLASAHRILGEADVVVHYNGKRFDIPTLNRDFILAGKLPPAPF-------RQLDL- 121

Query: 107 SALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
             L+ V    + +S K+    +EL            L+ R      EAW    EY + DV
Sbjct: 122 --LETVKRRFRFTSNKLAHISQELGLEGKVKHEGHTLWVRCLAGDPEAWEQMAEYNRRDV 179

Query: 166 TVTREIFKRLEPLS 179
           T+  ++   L P  
Sbjct: 180 TLLEQLHDVLMPWL 193


>gi|327266476|ref|XP_003218031.1| PREDICTED: e3 ubiquitin-protein ligase TRIM41-like [Anolis
           carolinensis]
          Length = 477

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 80/255 (31%), Gaps = 41/255 (16%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            +  ++  +    HN  F R+ L   +    P                P   + + +   
Sbjct: 20  LDFFKDPVIIDCGHN--FCRSCLAKYWGEPGPEAS------------CPQCREKIPQRTL 65

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD-----VTVTREIF 172
             ++++    EL+ +  +G   E         H+E  +LF   C+ D         R   
Sbjct: 66  RPNRQLANMAELVQKLQEGRKKEEGRRDACKMHQEPLKLF---CREDEAPICTVCDRAKE 122

Query: 173 KRLE---PLSSKEQEL-----WYLDQTINDRGYCVDVALAHTLNQIV-----DVERTKLD 219
            R     PL    QE      ++L+     R    D      L +       D+E+ K+ 
Sbjct: 123 HRGHNVIPLEEAFQEYKEKIKFHLESLRKKREEFKDQQYVQELRRKDYQTQLDLEKMKIK 182

Query: 220 QELESLTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
              E +   L      CL +L      +    +E   + T  ++     +L+    ++  
Sbjct: 183 SLFEGMQRFLEEKQHFCLTQL-----EDLEKEMEKKQDKTLAKLTEEISQLSLLITEMEE 237

Query: 279 NRMRASRSAVLKLNT 293
             ++ +   +  +  
Sbjct: 238 KCLQPASDFLQDIRN 252


>gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
          Length = 377

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 46  DCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           + V    + Q  + + LEN D+ I AHN+ F+R      F L +P   W C+  
Sbjct: 188 EMVQGKAIDQEAVTQFLENVDIII-AHNASFDRPFFDKMF-LHLPPKAWGCSRA 239


>gi|229589039|ref|YP_002871158.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
 gi|229360905|emb|CAY47765.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
          Length = 377

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 48/154 (31%), Gaps = 23/154 (14%)

Query: 38  DDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWIC 95
           D     L D    D   P  L   LEN  V  V H    +  VL      L +P+     
Sbjct: 50  DGVRAYLIDPLTIDNWQP--LAALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLF---D 104

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T + A    L  ++        +   ++ +G+       +  +   +             
Sbjct: 105 TQLAAAYLNLGFSMGYSRLVQAVLDIELPKGETRSDWLQRPLSETQI------------- 151

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
               Y   D     E++ RL P  S E+  W LD
Sbjct: 152 ---SYAAEDAVHLAEVYTRLRPRLSDEKYAWVLD 182


>gi|313228250|emb|CBY23399.1| unnamed protein product [Oikopleura dioica]
          Length = 644

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 56/152 (36%), Gaps = 9/152 (5%)

Query: 204 AHTLNQIVDVERTKLDQELESL-TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
              +  +      +L + ++SL T+   ++ R  + L++ +    GL +        + +
Sbjct: 13  IKKILDMKLDSDKELVEAMKSLSTFFGDNNLRNRKNLRSVI-ERRGLKINQEFLNDYRTL 71

Query: 263 LSSNKKLTPQAI------QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                ++T +        +  + R++ +++    L +    +  +GR+    Q   ++  
Sbjct: 72  KKQIDQVTEEVQGMSQCCEEMSERLKKAKTQTASLISNTSELRKEGRIIEMRQQAASTFI 131

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            ++       Q L R   +    ++  T L  
Sbjct: 132 EKFQLTSAQFQTL-RAGPNEPLSEEFFTALDR 162


>gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803]
 gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803]
          Length = 217

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 18/172 (10%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+  + +   + L      +  V              L   +E+  +T + H +
Sbjct: 33  VDTETMGLNPHRD--RLCLVQICDPEGNVTALRIAKGQEEAPNLTRLMEDPGITKIFHFA 90

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            F+   LK  F++        CT + ++     ++   +              K L+   
Sbjct: 91  RFDTAQLKHTFDIKTYP--IFCTKIASKIARTYTSHHGL--------------KTLVQEL 134

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
              E  +     +  N     +    Y   DV     +  +LE + ++E  L
Sbjct: 135 VGVELDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLEKMLAREDRL 186


>gi|326536930|ref|YP_004306337.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
 gi|318054506|gb|ADV35682.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
          Length = 712

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 31/205 (15%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIIS-------------DCVRSCVIASEGKKLVV 378
               H  ++        +  S P+  Q+ S               + +  I      +  
Sbjct: 394 DGFIHGSINPNGAVTGRATHSYPNMGQVPSAKAPFGPECRSLFGAIYARHIPGWENVVQA 453

Query: 379 -ADLAGIEARVLAWMAG--EQWKLKAFETGEDLY--VTTYARSFNVAPAQVTKDQ----R 429
             D +G+E R L       +           D++      A     A       Q    R
Sbjct: 454 GVDASGLELRCLGHFGAKYDGGGYVDQVLNGDVHWANAVAAGIAKDAVRDKENHQHDRWR 513

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K    A  Y  G            +            +  + + +     + ++E  
Sbjct: 514 DNAKTFIYAFLYGAG---------DAKIGSIVGGGAAAGKALKKAFLENTPVIKSLREGL 564

Query: 490 PEHAIEDLFIGTACERVKKAWRQKH 514
               IE        ++    W+++ 
Sbjct: 565 EGSLIESQVYNRVTKKFDIKWKRRF 589


>gi|327198232|ref|YP_004306808.1| putative DNA polymerase [Pseudomonas phage KPP10]
 gi|297591758|dbj|BAJ09178.1| putative DNA polymerase [Pseudomonas phage KPP10]
          Length = 305

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 57  LKEALENTDVTIVAHNS-YFERTVLKACF--NLDIPIHRWI----CTLVLARSNGLPSAL 109
           +   L +    +VAHN   F+   + A    +  +P   +     C +         ++L
Sbjct: 120 VLAGLLDEADFVVAHNGRKFDLPTINAHLVKHDILPPSPYKIIDTCDIAKKVFKFPSNSL 179

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           K++   LK    K++ G               L+ R      EAW    EY   DV V  
Sbjct: 180 KSLAIFLKCQHDKLDTG------------GFELWARVMDGDPEAWDHMMEYNVFDVIVLE 227

Query: 170 EIFKRLEPL 178
           E++ +L   
Sbjct: 228 EVYLKLRAW 236


>gi|209966458|ref|YP_002299373.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209959924|gb|ACJ00561.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 204

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 53/173 (30%), Gaps = 26/173 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQVLKEALENTDVTIVAH 71
           ID    G+    +   + L      D    L           P  LK  L +     + H
Sbjct: 22  IDTETMGLNPARD--RLCLVQLSAGDGRCHLVQFRQGAGYDAP-NLKRMLTDPGTLKLFH 78

Query: 72  NSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKEL 129
            + F+  V++A    L  P++       L R+      LK +    L +   K ++  + 
Sbjct: 79  FARFDIAVMQAYLGVLTGPVYCTKVASKLTRTFTDRHGLKDLCRDLLGVELSKQQQSSDW 138

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                 E      +Y   DV    EI  RL+ + ++E
Sbjct: 139 -------------------GADELTAEQLKYAASDVLHLHEIKARLDGMLARE 172


>gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 193

 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L   LE+  +T + H  
Sbjct: 11  IDTETLGLKPHRDRLCV--VQLSSGDGTADIIQVAKGQNRAPNLVALLEDKAITKIFHFG 68

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  +L   F  +   +        L R+      LK +  E L ++  K ++  +  A
Sbjct: 69  RFDLAILAHTFGVIPDVVFCTKIASKLTRTYTDRHGLKEICSELLNINISKQQQSSDWAA 128


>gi|237651526|ref|YP_002898997.1| putative portal protein [Roseophage EE36P1]
 gi|220898158|gb|ACL81415.1| N4 gp59 protein [Sulfitobacter phage EE36phi1]
          Length = 800

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 57/192 (29%), Gaps = 21/192 (10%)

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTETTCQRVLSSN 266
           Q+ D  + + D   ES +   V        L   L       +    LTE   +  L   
Sbjct: 2   QMNDEYKIQSDNRNESASNKGVDPDN----LDEVLEETQKEEVVGNKLTEWEKEPTLEDL 57

Query: 267 KKLTPQAIQV-----------FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           ++    A Q             + R      A  K      A+     +R   ++   + 
Sbjct: 58  RQDLEFARQETDDQKSNVSGWLDLRNATGAEAPKKAKAGRSAVQPKL-IRKHNEWRYPAL 116

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           T  +       Q LPR      + +Q    L     +  + +  I   VR+ V   +G  
Sbjct: 117 TEPFLNTDRMFQVLPRTHEDGPKAEQNQVVLNWQWDTKINKVDFIDRYVRTAV--DKGSV 174

Query: 376 LVVADLAGIEAR 387
           +V       E R
Sbjct: 175 VVRVGWEQ-EYR 185


>gi|228475705|ref|ZP_04060423.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270487|gb|EEK11922.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 367

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
             + + ++  I T      T   + +Q +S  V+  ++ ++  K+ V D    E  VLA+
Sbjct: 119 NQKLNTKISLIGTRTHRITTRSFN-IQGLSKEVKQLILPTQFNKVFVIDFKAFEPSVLAY 177

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A +    +   + + LY        N++  +     R + K   +     GG    +K 
Sbjct: 178 LANDNHLKEYLNSSQGLYD---TLLNNLSLTET---HRKLVKRAFIGSFLFGGNYMSEKF 231

Query: 452 ASTTGLNLNT 461
                ++ + 
Sbjct: 232 KLNQYISEDE 241


>gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 32/143 (22%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD-- 50
            + +D+   G+ +  +D  +    +  D                    PV +     D  
Sbjct: 32  YAVVDVETTGLAR--DDRIISAAVYRLDARGDVEDHWYTLVNPERDPGPVWIHGLTSDVL 89

Query: 51  ---PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN 103
              P+ PQV  E  E      +VAHN+ F+ +++   +       P+ + +CT+ LA+  
Sbjct: 90  EGAPLFPQVAAELSERLAGRVLVAHNAAFDWSMIAREYARAAVTAPVEQRLCTIALAKEL 149

Query: 104 GLPSA---LKAVGEALKLSSQKM 123
            LP     L+++     +  Q  
Sbjct: 150 RLPLPNHKLESLAAHFGVVQQHA 172


>gi|169842239|ref|ZP_02875344.1| hypothetical protein cdivTM_34052 [candidate division TM7
           single-cell isolate TM7a]
          Length = 38

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
           +  E R+ A MAG++  +  F    D++  
Sbjct: 5   SQFELRLAAIMAGDEDLINDFNNDIDIHTL 34


>gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
 gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
          Length = 204

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 45/170 (26%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D    L            L+  L +  V  + H  
Sbjct: 22  IDTETMGLDPRRDRLCV--VQLSAGDGDAHLVQIERGQTSAPNLERLLTDPQVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   LK  F +        CT + ++               L+L    + + ++    
Sbjct: 80  RFDIAALKRAFGVRTEP--VWCTKIASKMVRTFTDRHGLKYLLLELVGVDVSKQQQTSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                T                    +Y   DV     +   LE    +E
Sbjct: 138 GAAELT----------------DAQKDYAASDVLHLHRLKDELEARLLRE 171


>gi|313241897|emb|CBY34103.1| unnamed protein product [Oikopleura dioica]
          Length = 635

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 56/152 (36%), Gaps = 9/152 (5%)

Query: 204 AHTLNQIVDVERTKLDQELESL-TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
              +  +      +L + ++SL T+   ++ R  + L++ +    GL +        + +
Sbjct: 13  IKKILDMKLDSDKELVEAMKSLSTFFGDNNLRNRKNLRSVI-ERRGLKINQEFLNDYRTL 71

Query: 263 LSSNKKLTPQAI------QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                ++T +        +  + R++ +++    L +    +  +GR+    Q   ++  
Sbjct: 72  KKQIDQVTEEVQGMSQCCEEMSERLKKAKTQTASLISNTSELRKEGRIIEMRQQAASTFI 131

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            ++       Q L R   +    ++  T L  
Sbjct: 132 EKFQLTSAQFQTL-RAGPNEPLSEEFFTALDR 162


>gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
          Length = 204

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 45/170 (26%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D    L            L+  L +  V  + H  
Sbjct: 22  IDTETMGLDPRRDRLCV--VQLSAGDGDAHLVQIERGQTSAPNLERLLTDPQVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   LK  F +        CT + ++               L+L    + + ++    
Sbjct: 80  RFDIAALKRAFGVRTEP--VWCTKIASKMVRTFTDRHGLKYLLLELVGVDVSKQQQTSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                T                    +Y   DV     +   LE    +E
Sbjct: 138 GAAELT----------------DAQKDYAASDVLHLHRLKDELEARLLRE 171


>gi|260913969|ref|ZP_05920443.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
 gi|260632056|gb|EEX50233.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
          Length = 383

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 45/345 (13%), Positives = 102/345 (29%), Gaps = 43/345 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           +D   V L D +        +   L N +V  V H    +  V +            I T
Sbjct: 58  YDGERVSLIDPLSIQDFSPFI-ALLANQNVLKVLHACSEDLEVFQHY--YQQMPTPMIDT 114

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A     P++             ++++G        +  + + L              
Sbjct: 115 QIMASFLSFPNSTGLATLIQHYFQLEIDKGASRTDWLARPLSDKQLV------------- 161

Query: 157 FGEYCKGDVTVTREIFKRLE------PL-----SSKEQELWYLDQTINDRGYCVDVALAH 205
              Y   DV     +++R++      P      +  E  L   +Q  +     +++  A 
Sbjct: 162 ---YAAADVWYLLPLYQRMQQDLQQTPWQSAVENDCEMLLAKREQGKDPEFAYLNIPNAW 218

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
            LNQ   +    L +           +   + +    L+       ++  + T + +   
Sbjct: 219 RLNQQELMRLKVLAKWRLEDAMKRDLALNFVVR-GEHLWA----VAKNNPKHTSELLALG 273

Query: 266 NKKLTPQA--IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
              L  +    ++ +   +A+R        L+  +  D R      +  A +  +     
Sbjct: 274 LTALEVRIHGKKILHLLSQANRMEEAHYPNLITRVVDDSR------YKKALKLLQQQLKT 327

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
             P +L R   + + +   +         DP+ L  +    R   
Sbjct: 328 LQPMDLAREVIASKRMLDGLIKWYWIEQEDPNALPELLIGWRRDF 372


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 38  DDHPVELWDCVHD-----PVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFNL---DI 88
           D  PV +     D     P+ P++  E     D   +VAHN+ F+  ++   +       
Sbjct: 64  DPGPVWIHGLTTDVLAGAPLFPEIAAEFAARLDGRVLVAHNAMFDWQMIAREYARAESAA 123

Query: 89  PIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123
           P+ + +CT+ LA+   LP     L+++     +  Q+ 
Sbjct: 124 PVRQRLCTIALAKELSLPLPNHKLESLAAHFGVVQQRA 161


>gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71]
 gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71]
          Length = 370

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 75/252 (29%), Gaps = 26/252 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     DDH   L D +    +   L+  L ++    V H+   +  V +      
Sbjct: 39  PHIALLQLCTDDHAW-LIDPLTISNL-DGLRALLTDSACIKVLHSCSEDLEVFRHWLG-- 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +     + T       G    L       +L   ++++G+       +  +         
Sbjct: 95  VLPSPLVDTQRATALLGKGFGLGYRALVKELLGVELDKGETRSDWLKRPLSESQ------ 148

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV----DVAL 203
                       Y   DV      ++ L  L+ ++  + ++     +    +    D  +
Sbjct: 149 ----------CHYAALDVLELVPAWRILRELAEEQGRMQWVLDEGEEA-IRLLKDRDGQI 197

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
              +     + R +L + L  L       +R ++K + W+  +       +        L
Sbjct: 198 YRRVKSASRLSRRQL-EALRRLCEWREDLARAVDKPRGWIVEDKAFLAIAMAIPEDHDAL 256

Query: 264 SSNKKLTPQAIQ 275
           +    L    ++
Sbjct: 257 AELDVLPASVLR 268


>gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 204

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 45/170 (26%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D    L            L+  L +  V  + H  
Sbjct: 22  IDTETMGLDPRRDRLCV--VQLSAGDGDAHLVQIERGQTSAPNLERLLTDPQVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   LK  F +        CT + ++               L+L    + + ++    
Sbjct: 80  RFDIAALKRAFGVRTEP--VWCTKIASKMVRTFTDRHGLKYLLLELVGVDVSKQQQTSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                T                    +Y   DV     +   LE    +E
Sbjct: 138 GAAELT----------------DAQKDYAASDVLHLHRLKDELEARLLRE 171


>gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
 gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
          Length = 329

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 26/108 (24%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW---------DCV 48
           +D    G+               +YA+D  +      F     P +           + V
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITGITDEMV 135

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
               +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 136 KGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 182


>gi|319935157|ref|ZP_08009596.1| hypothetical protein HMPREF9488_00427 [Coprobacillus sp. 29_1]
 gi|319809807|gb|EFW06195.1| hypothetical protein HMPREF9488_00427 [Coprobacillus sp. 29_1]
          Length = 536

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 5/175 (2%)

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            + +AL           +     L          T         A+    + Q    +  
Sbjct: 39  CIAMALTSGVVLPDMCGLGGDAFLLYYDAKTQKITAMNGSGGAPAKATIEYYQSLGLKSV 98

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSEL-WNELHQAFEQTIENGKAIIARKRRDVPLVY-- 550
            +D  +          + +   +   L + +L +   +  E G  +  +  R +   Y  
Sbjct: 99  PKDGMLSVTVPGAVDVYFEALKQFGTLSFADLCEDAIELSETGVPVSEKVARHMHTDYQK 158

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQ 603
           M + KN   L L  G+   Y ++  N+ Y  +    ++  R+  Y GKL + IV+
Sbjct: 159 MCRFKNLKNLYLKDGKPYPYGELVYNKDYAKSLRYLKEHGRDGFYKGKLADKIVE 213


>gi|228969100|ref|ZP_04130014.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|229073434|ref|ZP_04206570.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228709741|gb|EEL61779.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228790589|gb|EEM38276.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 235

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656
             +    IVL +HDE++ + P     +    + ++M +   
Sbjct: 138 LEEHDIHIVLQIHDELIFDVPQDVSQDVLKEISNIMLNAIP 178


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
           + +K   ++T V   AHN+ F+ +VL+     +N+++P   +ICT+ LAR
Sbjct: 83  EKIKHYFDDTLVI--AHNASFDISVLRKSAELYNIELPEFNYICTMKLAR 130


>gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
 gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
          Length = 332

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL +    I+AHN+ F+R  L+  F++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIDGADIIIAHNAGFDRPFLER-FSIAFANKPWACS 185


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
           + +K   ++T V   AHN+ F+ +VL+     +N+++P   +ICT+ LAR
Sbjct: 72  EKIKHYFDDTLVI--AHNASFDISVLRKSAELYNIELPEFNYICTMKLAR 119


>gi|228969099|ref|ZP_04130013.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228790588|gb|EEM38275.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 134

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               E R LA +  E   ++AF+ G D++     +   
Sbjct: 6   YIQQELRWLAIVTQEPVLIEAFKKGLDVHSQITCQIKG 43


>gi|222054412|ref|YP_002536774.1| exonuclease-like protein [Geobacter sp. FRC-32]
 gi|221563701|gb|ACM19673.1| exonuclease-like protein [Geobacter sp. FRC-32]
          Length = 278

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 15/122 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           T ++D ET         G+ ++ + +  +     +D   V  +  +H   +    +E + 
Sbjct: 86  TAYLDIET--------SGLSRHRDIITTVAL---YDGKEVRYY--IHGQNL-ADFREDVA 131

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
              V +  +   F+   L+   ++ +P        VL RS G    LK   + L L  + 
Sbjct: 132 KYQVLVTYNGKAFDIPFLEHYLDMSLPQSHIDLMHVL-RSLGFKGGLKGCEKQLGLVREG 190

Query: 123 ME 124
           ++
Sbjct: 191 LD 192


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 18/150 (12%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHR--WICT 96
           VEL        + + L++ L       VAHN  F+   L         DIP++    +CT
Sbjct: 74  VELIHAPEFEGIARELRDLL--AGRVFVAHNVAFDSKFLLSEYRRLGADIPVNSHTMLCT 131

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           + L+RS     +L        + ++                    L  R   +    W  
Sbjct: 132 MKLSRSLIGVGSLADCCREFGIDNEDAHSA------LSDAHATALLLGR-LMDADPKWS- 183

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
                +  +    E  +    L S E+  W
Sbjct: 184 ---GWRRRLDAAEEAGEHWPELKSLERREW 210


>gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
 gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
          Length = 367

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 12/98 (12%)

Query: 36  GFDDHPVEL-----WDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---N 85
            FDD  V +      D  +    P++  ++L        +VAHN+ F+ +VL       +
Sbjct: 45  SFDDINVRIHGIAPVDVRNAKTFPELWYDSLSAFFPVDGVVAHNARFDLSVLTKTLVSYD 104

Query: 86  LDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQ 121
           +  P   + CTL +++         L  V EAL +  +
Sbjct: 105 IPSPKMSYACTLDMSKKIDFIGGGKLPHVCEALGIELE 142


>gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1031

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 45/144 (31%), Gaps = 36/144 (25%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIH 91
            A+  D H  ++ D          L E + +  +  VAHN+ F+RT          +  +
Sbjct: 95  VAYLTDIHDEDVADAPLPSEALSELAEFVGDAKI--VAHNAEFDRTFTTRHPSGYPLLEN 152

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            WI +L LAR              + L   K     +L+  F                  
Sbjct: 153 TWIDSLDLAR--------------IALPRLKSHRLLDLVKAFGAP--------------- 183

Query: 152 EAWRLFGEYCKGDVTVTREIFKRL 175
               L       DV  T  IF+ L
Sbjct: 184 ----LSTHRADADVEATCSIFRIL 203


>gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
 gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
          Length = 353

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGICKYAEDV-CVILFAFGF-DDHPVELW-------------------------- 45
           +D    G+    E++  +   AF + DD  +                             
Sbjct: 97  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPSRPIPADITRITGITD 156

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+  F++      W C+
Sbjct: 157 EMVRGQTIPREKLDALIAEADIIIAHNAGFDRPFLER-FSIAFANKPWACS 206


>gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
 gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
          Length = 178

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 21/143 (14%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL-----FAFG-FDDHPVELWDC 47
           M  + +DFET      S   L    +   K A++   ++     F +     H +   D 
Sbjct: 1   MNFVAMDFETANGKRYSACSLALTIVRDSKIADEFYTLINPQTDFFWRNVQIHGIHEEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
              P  P+V +        +  ++AHN+ F+ +VLK     + +  P  + + T+  +R 
Sbjct: 61  QDAPTFPEVWQHIKQFYRPEQLVIAHNNSFDNSVLKNTLLHYGIQPPTFQTLDTVKSSRR 120

Query: 103 N--GLP-SALKAVGEALKLSSQK 122
              GL    L  V +AL++    
Sbjct: 121 LIPGLDNYRLNTVCDALQIDLHH 143


>gi|228907508|ref|ZP_04071365.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228852000|gb|EEM96797.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 134

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               E R LA +  E   ++AF+ G D++     +   
Sbjct: 6   YIQQELRWLAIVTQEPVLIEAFKKGLDVHSQITCQIKG 43


>gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 230

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVL 99
           D + D  +   + EA  +   D  +V HN+ F+   L A         +P+ + I TL +
Sbjct: 62  DFLADKPLFAEVAEAFLDFIGDAKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAIDTLAI 121

Query: 100 ARSN--GLPSALKAVGEALKLSSQKMEEGKELI 130
           AR    G P++L A+     + +   E+   L+
Sbjct: 122 ARRKFPGSPASLDALCRRFGVDNSAREKHGALL 154


>gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756]
 gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756]
          Length = 237

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLA- 100
               P   ++    +E   D  +VAHN+ F+R      L+ C    I   RW+ TL +A 
Sbjct: 65  LTGKPKFHEIADRFVEFVGDSVVVAHNAAFDRQFVNFELEKCGRAPIREDRWVDTLAMAK 124

Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            R  G+ ++L A+ +  K+S +  ++   LI
Sbjct: 125 KRFPGMYNSLDALCKRFKISLESRDKHGALI 155


>gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01]
          Length = 204

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 23/182 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV    F   D    +     D      + + L + +   + H +
Sbjct: 22  IDTETMGLNPMRDRLCV--IQFSSGDGNAHIVQIEPDAPQAPNICKILLDQNKVKLFHFA 79

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALK-AVGEALKLSSQKMEEGKELIA 131
            F+  +LK  F ++I P++       L R+      LK  + E L +   K ++  +   
Sbjct: 80  RFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLKNLLREMLSIEISKQQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                               E  +   EY   DV    ++  +L     +E      +  
Sbjct: 138 -----------------GASELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIAEAC 180

Query: 192 IN 193
            N
Sbjct: 181 FN 182


>gi|310815760|ref|YP_003963724.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
 gi|308754495|gb|ADO42424.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
          Length = 388

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 87/263 (33%), Gaps = 26/263 (9%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y   +C++  AF   D    L D + D +  + L +   N  V  V H +  +  +    
Sbjct: 35  YYAKLCLVQLAFSGPDADAALVDPLADGIDLKPLYDLFLNPAVVKVFHAARQDLEIFS-- 92

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
              ++       T V A   G    +     A K++   ++                   
Sbjct: 93  VGQNVIPAPLFDTQVAAMVCGYGEQVSYETLARKIAKADID-------------KTSRFT 139

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
           D ++    EA     EY   DVT  R+I++ L    +K     ++ + +   G   D   
Sbjct: 140 DWSRRPLSEAQ---KEYALADVTHLRQIYENLSAQIAKSGRAAWVAEEM---GVLNDPDT 193

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
                  VD E+  L  +  + +   ++  + L + +        +    + +      L
Sbjct: 194 YR-----VDPEQAWLRVKTRTSSAKFLAVMKELARFREEYAQAQDVPRSRVYKDDAMLEL 248

Query: 264 SSNKKLTPQAIQVFNNRMRASRS 286
           +S K  T   +      +R +R 
Sbjct: 249 ASLKPATEDDLGTARLLLREARR 271


>gi|298290361|ref|YP_003692300.1| 3'-5' exonuclease [Starkeya novella DSM 506]
 gi|296926872|gb|ADH87681.1| 3'-5' exonuclease [Starkeya novella DSM 506]
          Length = 210

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAH 71
           ID    G+  + + +CV        D   ++              L+  L +  +T + H
Sbjct: 26  IDTETLGLNPHRDRLCV--VQLSPGDGTADVVQIPAGAGPGSAPNLEALLTDPRITKLFH 83

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELI 130
            + F+  VL   F L +      CT + +R                  +     G KEL+
Sbjct: 84  FARFDVAVLGKTFGLTVAP--VWCTKIASRLTR---------------TYTDRHGLKELV 126

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                 +  +     +     E      +Y   DV     + ++L  + ++
Sbjct: 127 RELIGVDLSKQQQSSDWA-AEELSEAQLQYAASDVLYLHALREKLASMLAR 176


>gi|237651609|ref|YP_002899079.1| putative portal protein [Roseophage DSS3P2]
 gi|220898079|gb|ACL81337.1| N4 94kDa-like protein [Silicibacter phage DSS3phi2]
          Length = 800

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 17/190 (8%)

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           Q+ D  + + D   ES +   V      E  +     +  +    LTE   +  L   ++
Sbjct: 2   QMNDEYKIQSDNRNESASNKGVDPDNLDEVFEE--TQKEEVTGNKLTEWEKEPTLEDLRQ 59

Query: 269 LTPQAIQV-----------FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               A Q             + R      A  K      A+     +R   ++   + T 
Sbjct: 60  DLEFARQETDDQKANVSGWLDLRNATGAEAPKKAKAGRSAVQPKL-IRKHNEWRYPALTE 118

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
            +       Q LPR      + +Q    L     +  + +  I   VR+ V   EG  +V
Sbjct: 119 PFLNTDRMFQVLPRTHEDGPKAEQNQVVLNWQWDTKINKVDFIDRYVRTAV--DEGSVVV 176

Query: 378 VADLAGIEAR 387
                  E R
Sbjct: 177 RVGWEQ-EFR 185


>gi|195472753|ref|XP_002088664.1| GE11355 [Drosophila yakuba]
 gi|194174765|gb|EDW88376.1| GE11355 [Drosophila yakuba]
          Length = 3968

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 79/204 (38%), Gaps = 12/204 (5%)

Query: 112  VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            VGE L L    + +         + + +      +  N  + W+               I
Sbjct: 3187 VGEVLNLVEMLLNDADSW-----RTQVNTSGLAASAQNLEQRWKNVCSQSAERKARILTI 3241

Query: 172  FKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +  L+ L   + E + W   Q     G+  D        Q ++  + +L  +LE L    
Sbjct: 3242 WNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSNSK--QKLEERQKELRAKLEELESQS 3299

Query: 230  VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSA 287
            V + R LE++   L +  G+  E++ + T     ++S  ++LTP+   + +   + ++  
Sbjct: 3300 V-NLRQLEQIYAKLTMSAGVEPENIQKLTLPTKVMVSMWRQLTPRCHALLDAIDKDAKLM 3358

Query: 288  VLKLNTLVEAMNSDGRLRGTLQFL 311
                N  +EA NS   ++  L+ L
Sbjct: 3359 REFNNAQLEATNSLNAIQKALEQL 3382


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 65/175 (37%), Gaps = 36/175 (20%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVE---------------LW------DCV 48
            + +D+   G+ +  +D  +    +  D    VE               +W      D +
Sbjct: 22  YAVVDVETTGLAR--DDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDVL 79

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN 103
               + + + +       D  +VAHN+ F+ +++   +     + P+ + +CT+ L++  
Sbjct: 80  EGAPLFRDIAQEFSARLADRVLVAHNAVFDWSMIAREYARAETEAPVRQRLCTIALSKEL 139

Query: 104 GLPSA---LKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHR 151
           GLP     L+++     +  Q+    +++ + L   F          +   P H 
Sbjct: 140 GLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLRAAAASNVRLPLHE 194


>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
 gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
          Length = 381

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 89/272 (32%), Gaps = 35/272 (12%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L     DD    + D      + +VL   L N +V  + H    +  +L       +  H
Sbjct: 40  LIQLATDDETA-IVDPFAVDDL-KVLAPVLRNENVMKLFHAGNQDLEILLREVG--VLPH 95

Query: 92  RWICTLVLARSNGLPSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
               T V A   G    +           ++ +K++   +   R               P
Sbjct: 96  PLFDTQVAAALLGHTQQIGYAALVHAECGVTLKKIDSFTDWSRR---------------P 140

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     EY   DV     +++R+     +   L +LD+   D     D A      
Sbjct: 141 LSDSQL----EYAADDVVYLPRMYERMRAQLVELGRLSWLDRDFED---LADPARY---- 189

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
              + ER K  + +  L+   +S++R +   +        +  + +   T ++++ + K+
Sbjct: 190 AANERERYKRLKRVSQLSRRQLSAAREVAAWRELEAQRRDVPRKWV--VTDEQIVEACKR 247

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
                  +F  R  + R +     T+V  + S
Sbjct: 248 EPRSIDDLFMVRGLSDRLSTKDARTVVSLIAS 279


>gi|167647058|ref|YP_001684721.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167349488|gb|ABZ72223.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 201

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 1   MATLFIDFETRSPIDLTKC--GI------------CKYAEDVCVILFAFGFDDHPVELWD 46
           M  + IDFET +    + C  G+              Y   + +    +    H +   D
Sbjct: 1   MPVVAIDFETANEQRSSPCAIGLAWIENGRITEVEHHYIRPIDMRFSGWNIAVHGIRPAD 60

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
                  P VL          T++AHN+ F+ +V++     + L  P   +ICT+ +A++
Sbjct: 61  VEDADAFPDVLGRLQARIERATVIAHNAAFDISVMRRTCELYGLPFPCFDYICTVQVAKN 120

Query: 103 N--GLPSA-LKAVGEALKLSSQKMEEGKE 128
              GLPSA L AV + L +  +  +  ++
Sbjct: 121 TWPGLPSAKLNAVCDFLGVEFKHHDAAQD 149


>gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54]
          Length = 699

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 52/391 (13%), Positives = 103/391 (26%), Gaps = 77/391 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +  FA+G+    V         +  +    A + + +   +H +  +     A   L + 
Sbjct: 230 LRFFAYGW--GEVRGLPGTQSGLFDEASAGAADASTLPEKSHGAMLDWL---ASLGLPVN 284

Query: 90  IHRWI-----------CTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIARFC--- 134
           +                  V A    LP  +  V  +   L +QK+        RF    
Sbjct: 285 VKHNHRATGAEGLMAFYAKVGALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAH 344

Query: 135 ------------------------------KGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                                         K      +   N   H E      +   GD
Sbjct: 345 KFPAEEATTTLLDIEVQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGD 404

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             + R     +  +     E    D          +  +               D+ +  
Sbjct: 405 TVIVRRAGDVIPEVVGAVLEKRPADAR--------EFVMPKACPVCGSAIERLEDETIAR 456

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-----NKKLTPQAIQVFNN 279
            T GL   +   ++          L +E L E   ++++ S        L          
Sbjct: 457 CTGGL-FCAAQRKQTLWHAASRKALDIEGLGEKLVEQLVDSGRVKSLADLFSLRPLELVG 515

Query: 280 RMRASRSAVLKLNTLVE--AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R  + +   L   ++     + GRL   L  LG    G  +            +R   
Sbjct: 516 LDRMGQKSADNLVEAIDKARAPALGRL---LFALGIRHVGETTARDV--------ARHFG 564

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
            ++ I+     +++S PD   +++  +R   
Sbjct: 565 SIEAIMDADEDALSSVPDVGPVVAGSIRRFF 595


>gi|89052719|ref|YP_508170.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
 gi|88862268|gb|ABD53145.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
          Length = 203

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    L            L   LE+ +   + H  
Sbjct: 22  IDCETMGLHPHRDRLCV--IQLSDGDGNAHLVQVAKGQTAAPNLCALLEDPNTLKLFHFG 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALK-AVGEALKLSSQKMEEGKELIA 131
            F+   +   F  L  P++       L R+      LK  + E L +   K ++  +   
Sbjct: 80  RFDIAAMYHAFGALTAPVYCTKIASKLVRTYTDRHGLKNLLQELLGIDISKQQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                      +Y   DV     +  +L+ + ++E
Sbjct: 138 -----------------GADSLTEAQVDYAASDVLYLHGVKDKLDVMLARE 171


>gi|258541225|ref|YP_003186658.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632303|dbj|BAH98278.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635360|dbj|BAI01329.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638415|dbj|BAI04377.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256641469|dbj|BAI07424.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256644524|dbj|BAI10472.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256647579|dbj|BAI13520.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256650632|dbj|BAI16566.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653623|dbj|BAI19550.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 402

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L   G  +  V L D + D +    LK    +T V  V H +  +  +    F  D
Sbjct: 48  PELCLVQIGATN-DVVLIDALADGIDLTPLKNLFVDTAVLKVFHAARQDLEIFLHLF--D 104

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                   T V A   G    +        L+   +++         +  +   L     
Sbjct: 105 ALPTPLFDTQVAAMVAGFGDQVGYDSLVGSLTGHMIDKSHRFTDWSVRPLSPAQL----- 159

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                       Y  GDVT  R +++RL     +EQ L ++   +
Sbjct: 160 -----------TYAAGDVTWLRLVYERLVKKLEQEQRLDWVAAEM 193


>gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium
           EB000_55B11]
 gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 204

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 23/182 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV    F   D    +     D      + + L + +   + H +
Sbjct: 22  IDTETMGLNPMRDRLCV--IQFSSGDGHAHIVQIEPDAPQAPNICKILLDQNKVKLFHFA 79

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALK-AVGEALKLSSQKMEEGKELIA 131
            F+  +LK  F ++I P++       L R+      LK  + E L +   K ++  +   
Sbjct: 80  RFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLKNLLREMLSIEISKQQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                               E  +   EY   DV    ++  +L     +E      +  
Sbjct: 138 -----------------GASELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIAEAC 180

Query: 192 IN 193
            N
Sbjct: 181 FN 182


>gi|229073435|ref|ZP_04206571.1| DNA polymerase I [Bacillus cereus F65185]
 gi|228709742|gb|EEL61780.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 134

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               E R LA +  E   ++AF+ G D++     +   
Sbjct: 6   YIQQELRWLAIVTQEPVLIEAFKKGLDVHSHITCQIKG 43


>gi|320544544|ref|NP_001188695.1| Muscle-specific protein 300, isoform G [Drosophila melanogaster]
 gi|318068310|gb|ADV36945.1| Muscle-specific protein 300, isoform G [Drosophila melanogaster]
          Length = 13540

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 12/217 (5%)

Query: 112   VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             VGE L L    + +         + + +      +  N  + W+               I
Sbjct: 12759 VGEVLNLVEMLLNDADSW-----RTQVNTSGLAASAQNLEQRWKNVCSQSAERKARILTI 12813

Query: 172   FKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             +  L+ L   + E + W   Q     G+  D          ++  + +L  +LE L    
Sbjct: 12814 WNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSK--HKLEERQMELRAKLEELESQS 12871

Query: 230   VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSA 287
             V + R LE++   L +  G+  E++ + T     ++S  ++LTP+   + +   + ++  
Sbjct: 12872 V-NLRQLEQIYAKLAMSAGVEPENIQKLTLPTKVMVSMWRQLTPRCHALLDAIDKDAKLM 12930

Query: 288   VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                 N  +EA NS   ++  L+ L ++   + S    
Sbjct: 12931 REFNNAQLEATNSLNAIQKALEQLPSAENQQTSKAEP 12967


>gi|313203245|ref|YP_004041902.1| ATPase AAA [Paludibacter propionicigenes WB4]
 gi|312442561|gb|ADQ78917.1| ATPase (AAA+ superfamily)-like protein [Paludibacter
           propionicigenes WB4]
          Length = 384

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 87/280 (31%), Gaps = 24/280 (8%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           PR +       Q+    P     +PD  Q I    R+   A+    ++  D       +L
Sbjct: 26  PRQAGKTSLARQVFPDKPYYSFENPDVRQQILSDPRAFFTANPDGAII--DEFQRYPEIL 83

Query: 390 AWMAG--EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +++ G  ++ K    + G+ +   T +       ++VT  Q   G+V  L L        
Sbjct: 84  SYIQGIVDEKK----QNGQFI--LTGSN-NVSMLSKVT--QSLAGRVALLKL-LPFSIAE 133

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN---FCRWMQENHPEHAIEDLFIGTACE 504
                    +N       +     P  + D  N     R   E + E  I  +       
Sbjct: 134 LDAFGKNYSVN-----DYLLNGFYPRVYADNLNPTKAYRNYYETYVERDIRQILQVKDVS 188

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD--KNNLILML 562
             +K  +    RV +L+N  + A E  + +              +         N+   L
Sbjct: 189 LFQKFMKLCAGRVGQLFNANNLATEVGVSSMTIQAWLSALQATYIVFLVQPWSANISKRL 248

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                L + DVG     L          +   G L EN+V
Sbjct: 249 VKTPKLYFYDVGLAAYLLGIENTSHVETHPLRGSLFENMV 288


>gi|312171139|emb|CBX79398.1| K03169 DNA topoisomerase III [Erwinia amylovora ATCC BAA-2158]
          Length = 574

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 99/365 (27%), Gaps = 55/365 (15%)

Query: 314 SRTGRWSGCVFPPQNLPR--PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           +  GR         NL R    R+ E     +  +    +     +      + +  IA 
Sbjct: 60  AGLGRARADWLTGMNLTRLYTLRAAEAGFDGVVSVGRVQSPTLALVVRRDREI-AAFIAK 118

Query: 372 EGKKLVVADLAGIEARVLAWMAG-EQWKLKAFETGEDLYVTTYARSFNV----APAQVTK 426
              ++       + A  + + A     K+   E    ++     +   +      A VT+
Sbjct: 119 PYWQVKA----QLNAGGITFPAQWIPAKVYTDEEKRCIHQNIAQQVVQICRQSGAATVTE 174

Query: 427 DQRAIGKV-MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            +    K    LA       +A  ++   +   +   A           +   +      
Sbjct: 175 CETKREKASPPLAFSLGTLQQAASRLRDMSPQQMLDTAQNRYEKHKATSYPRTDCGYLPE 234

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK------AII 539
                  A+ D    T  E +    +   S VS +WN+        I   +      A+ 
Sbjct: 235 SMREEIPALLDAIGRTDPECLPLLSQLDASLVSRIWNDKKITAHHGIIPTRNAFQLSALS 294

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---SYLNTTTRQLTREYTYGGK 596
             +RR   L+        L L       L + D+G      +      +     +   GK
Sbjct: 295 ETERRVYMLIRRNYLAQFLPLHESDITRLAF-DIGGQLFRTTGRTEVVKGWKVLF---GK 350

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP-----DTDEFNASMLYHLM 651
             E   +  + D                     DE V   P     +      + +  LM
Sbjct: 351 AEE---EGSAAD---------------------DEAVVALPPLKKDERCGVTGAEVVQLM 386

Query: 652 TSNPS 656
           T  P+
Sbjct: 387 TRPPA 391


>gi|86136835|ref|ZP_01055413.1| exonuclease, putative [Roseobacter sp. MED193]
 gi|85826159|gb|EAQ46356.1| exonuclease, putative [Roseobacter sp. MED193]
          Length = 204

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 46/170 (27%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    +            L   LE+ +   + H  
Sbjct: 22  IDCETMGLNPHRDRLCV--IQLSDGDGNAHIVQVAKGQTEAPNLCAMLEDPETLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   +   F          CT + +R                +L    + + +++   
Sbjct: 80  RFDIAAMYHAFGALTAP--VYCTKIASRLVRTYTDRHGLKNLTQELIGVDISKQQQMSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
             K  T   L                +Y   DV     + + L     +E
Sbjct: 138 GAKVLTEAQL----------------DYAASDVLYLHRLREALNKRLERE 171


>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 330

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 36/175 (20%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD-- 50
            + +D+   G+ +  +D  +    +  D                    PV +     D  
Sbjct: 25  YAVVDVETTGLAR--DDRIISAAVYRLDARGEVEDHWYTLVNPQRDPGPVWIHGLTSDVL 82

Query: 51  ---PVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
              P+ P V +E     D   +VAHN+ F+  ++   +     + P+ + +CT+ L+++ 
Sbjct: 83  RDAPLFPDVAEEFAARLDGRVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIALSKAL 142

Query: 104 GLPSA---LKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHR 151
            LP     L+++     +  Q+    +++ + L   F          D   P H 
Sbjct: 143 DLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLLAAAAGDVRLPLHE 197


>gi|288959282|ref|YP_003449623.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288911590|dbj|BAI73079.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 209

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 46  DCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL-- 99
           D    P  P+V     E      I+AHN+ F+ +VL+       LD P   ++CT++L  
Sbjct: 65  DVADAPEFPEVWATLRERVRGRLILAHNAAFDISVLRHTLTDYGLDWPACDYLCTVMLAR 124

Query: 100 -ARSNGLPSALKAVGEALKLSSQKMEEGKE 128
            A        L  + + L ++      G +
Sbjct: 125 RAWPALTGHRLNHLADFLGIALDHHHAGSD 154


>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces coelicolor A3(2)]
          Length = 328

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 36/175 (20%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD-- 50
            + +D+   G+ +  +D  +    +  D                    PV +     D  
Sbjct: 23  YAVVDVETTGLAR--DDRIISAAVYRLDARGEVEDHWYTLVNPQRDPGPVWIHGLTSDVL 80

Query: 51  ---PVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
              P+ P V +E     D   +VAHN+ F+  ++   +     + P+ + +CT+ L+++ 
Sbjct: 81  RDAPLFPDVAEEFAARLDGRVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIALSKAL 140

Query: 104 GLPSA---LKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHR 151
            LP     L+++     +  Q+    +++ + L   F          D   P H 
Sbjct: 141 DLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLLAAAAGDVRLPLHE 195


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 32/143 (22%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD-- 50
            + +D+   G+ +  +D  +    +  D                    PV +     D  
Sbjct: 21  YAVVDVETTGLAR--DDRIISAAVYRLDALGNVEDHWYTLVNPERDPGPVWIHGLTSDVL 78

Query: 51  ---PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLD---IPIHRWICTLVLARSN 103
              P+ P+V +E      D  +VAHN+ F+ +++   +       P+ + +CT+ LA+  
Sbjct: 79  EGAPLFPEVAEELSARLADRVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIALAKEL 138

Query: 104 GLPSA---LKAVGEALKLSSQKM 123
            LP     L ++     +  Q+ 
Sbjct: 139 RLPLPNHKLASLAAHFGVVQQQA 161


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 32/143 (22%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD-- 50
            + +D+   G+ +  +D  +    +  D                    PV +     D  
Sbjct: 19  YAVVDVETTGLAR--DDRIISAAVYRLDALGNVEDHWYTLVNPERDPGPVWIHGLTSDVL 76

Query: 51  ---PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLD---IPIHRWICTLVLARSN 103
              P+ P+V +E      D  +VAHN+ F+ +++   +       P+ + +CT+ LA+  
Sbjct: 77  EGAPLFPEVAEELSARLADRVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIALAKEL 136

Query: 104 GLPSA---LKAVGEALKLSSQKM 123
            LP     L ++     +  Q+ 
Sbjct: 137 RLPLPNHKLASLAAHFGVVQQQA 159


>gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 272

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 16  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 75

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 76  EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 125


>gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
 gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
          Length = 421

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 19/155 (12%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D  V + D +   +    L E L +  V  V H +  +  +    F  D
Sbjct: 69  PELCLVQLASADE-VVVVDALAPGMDLAPLGELLADEGVIKVFHAARQDLEIFLHLF--D 125

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                   T V A   G    +        +   ++++         +  +   +     
Sbjct: 126 RLPQPLFDTQVAAMVAGYGDQVGYDSLVASVVGAQIDKSHRFSDWAARPLSAAQI----- 180

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                      EY   DVT  RE+++RL     +E
Sbjct: 181 -----------EYAAADVTYLREVYQRLVAQLDRE 204


>gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
 gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
          Length = 379

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 123 VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 182

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 183 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 232


>gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
 gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
          Length = 204

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    +   + L      D    L            L++ L +  V  + H  
Sbjct: 22  IDTETMGLDPRRD--RLCLVQLSSGDGNAHLVQIARGQTSAPNLEKLLTDPSVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR-------SNGLPSAL-KAVGEALKLSSQKMEE 125
            F+   +KA F +        CT + A+        +GL   L + VG  +    Q  + 
Sbjct: 80  RFDIAAMKAAFGVVTAP--VWCTKIAAKLVRTFTDRHGLKYLLQELVGVDVSKQQQTSDW 137

Query: 126 GKELI 130
           G E +
Sbjct: 138 GSETL 142


>gi|254474856|ref|ZP_05088242.1| ribonuclease D [Ruegeria sp. R11]
 gi|214029099|gb|EEB69934.1| ribonuclease D [Ruegeria sp. R11]
          Length = 385

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 31/199 (15%)

Query: 1   MATLFI--DFETRSP---------IDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCV 48
           M T+    + ET            +D        Y   +C++  A+ G D+    L D +
Sbjct: 1   MKTITTTDELETFCQEAAQHPYVTVDTEFLRERTYFSKLCLVQLAYPGKDNENAVLVDPL 60

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
            D +  + L     N  V  V H +  +  +     +  +       T V A   G    
Sbjct: 61  ADGLSLEPLYALFRNESVVKVFHAARQDLEIF--WVDAQVFPTPLFDTQVAAMVCGFGEQ 118

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +       K+  Q ++                   D ++    +A +    Y   DVT  
Sbjct: 119 VGYETLVRKIVKQGLD-------------KTSRFTDWSRRPLSDAQKT---YALADVTHL 162

Query: 169 REIFKRL-EPLSSKEQELW 186
           R+I++ L   L   E+  W
Sbjct: 163 RQIYEHLAAELKRTERSHW 181


>gi|262038498|ref|ZP_06011867.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261747367|gb|EEY34837.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 54

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667
           ++L VHDE++ E  D   E     +  +M +  ++ + + L A G
Sbjct: 1   MLLQVHDELIFEVKDDAIEKYTDKIKEIMENTVNF-EDIKLSANG 44


>gi|238695626|ref|YP_002922653.1| P39 [Xanthomonas phage phiL7]
 gi|190343993|gb|ACE75779.1| P39 [Xanthomonas phage phiL7]
          Length = 282

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 67/197 (34%), Gaps = 33/197 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA-------EDVCVILFAFGFDDHPVELWDCVHDPVMP 54
             L ID ET S + +   G+ K         +D  V+ F   +   P  ++D + +   P
Sbjct: 25  KILHIDIET-SQMIVWAWGLHKQFVGHEDIIQDWNVLSFCAKWQGVPTVIYDDLREQQNP 83

Query: 55  QV-------LKEALENTDVTIVAHNSY-FE----RTVLKACFNLDIPIHRWICTLVLARS 102
                    L + L   DV  VAHN   F+    R+ +       IP  R + TL+ +R 
Sbjct: 84  TKDRRLCVALAKLLTEADVV-VAHNGKKFDLKKIRSRMAHNKLKPIPDTRIVDTLLESRK 142

Query: 103 NGLPSALKAVGEALKLSSQ---KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               ++ K              K++ GK     F            N      AW    +
Sbjct: 143 VFGHTSHKLAYLTTHFGEDGLRKLDHGK-----FAGKALWRECQTGNLA----AWDEMRK 193

Query: 160 YCKGDVTVTREIFKRLE 176
           Y   DV     ++K L 
Sbjct: 194 YNIVDVLAMESMYKELR 210


>gi|148284142|ref|YP_001248232.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
 gi|146739581|emb|CAM79331.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
          Length = 210

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 28/180 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAF-----GFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ID    G+    + +C++ F         DD  V L            LK+ L +   T 
Sbjct: 22  IDTETMGLNFARDRLCLLQFCQESKDDNIDDKEVFLVKFEDQQYNSHNLKKLLMDCSRTK 81

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEE 125
           + H + F+   ++    + +  +   CT V ++          LK +             
Sbjct: 82  IFHFARFDLAAIQYYLGVTL--NNIFCTNVASKLVRTYTDSHGLKDLC------------ 127

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
            +EL+      +     + R      +      EY   DV     I   LE +  +E  L
Sbjct: 128 -RELLGIQISKQCQSSDWGRQSLTSDQE-----EYAAKDVVYLHRIKNILEEMLIREHRL 181


>gi|228907507|ref|ZP_04071364.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
 gi|228851999|gb|EEM96796.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
          Length = 235

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656
             +    IVL +HDE++ + P     +    + ++M +   
Sbjct: 138 LEEHDIHIVLQIHDELIFDVPQDVSQDVLKKISNIMLNAIP 178


>gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 241

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK----ACFNLDIPIH 91
           G  D  V+  D      +   L E L +  +   AHN+ F+R  +            P  
Sbjct: 59  GITDDKVK--DAPKFHEVVDDLMEFLGDAPLI--AHNANFDRNFIDFEIGRIGRTPPPQD 114

Query: 92  RWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           RWI TL LA  R  G+ ++L A+ +  K+S  +      LI
Sbjct: 115 RWIDTLALAQKRFPGMANSLDALCKRYKISLVERTLHGALI 155


>gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
 gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
          Length = 379

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 123 VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 182

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 183 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 232


>gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36]
 gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36]
          Length = 204

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 4/118 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    L            L   LE+  V  + H  
Sbjct: 22  IDCETMGLHPHRDRLCV--VQLSGGDGNAHLVQIAKGQTEAPNLCALLEDPHVLKLFHYG 79

Query: 74  YFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKEL 129
            F+   L   F     P++       L R+      L  +  E L +   K ++  + 
Sbjct: 80  RFDIAALLNTFGAKAAPVYCTKIASRLVRTYTDRHGLAKLCQELLSVDISKQQQSSDW 137


>gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
 gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
          Length = 204

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D    L            L+  L +  V  + H  
Sbjct: 22  IDTETMGLDPRRDRLCV--VQLSAGDGDAHLVQIERGQTRAPNLERLLTDPQVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   L+  F +        CT + ++               L+L    + + ++    
Sbjct: 80  RFDIAALQRAFGVRTEP--VWCTKIASKMVRTFTDRHGLKYLLLELVGVDVSKQQQTSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                T                    +Y   DV     + + LE    +E
Sbjct: 138 GAAELT----------------DAQKDYAASDVLHLHRLKEELEARLLRE 171


>gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330]
 gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
          Length = 332

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|254476761|ref|ZP_05090147.1| 3'-5' exonuclease [Ruegeria sp. R11]
 gi|214031004|gb|EEB71839.1| 3'-5' exonuclease [Ruegeria sp. R11]
          Length = 204

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 49/172 (28%), Gaps = 25/172 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CVI       D    +            L   LE+ +V  + H  
Sbjct: 22  IDCETMGLNPHRDRLCVIQM--SGGDGNAHIVQVAKGQTEAPNLCRMLEDPNVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIAR 132
            F+   +   F          CT + +R                + +     G K L   
Sbjct: 80  RFDIAAMYHAFGALAAP--VYCTKIASRL---------------VRTYTDRHGLKNLTQE 122

Query: 133 FCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +    + + D       +A     +Y   DV     +   L+    +E
Sbjct: 123 LIGVDISKQQQMSDWGAAQLSDAQ---LDYAASDVLHLHRLRAALDKRLDRE 171


>gi|198473987|ref|XP_002132604.1| GA25805 [Drosophila pseudoobscura pseudoobscura]
 gi|198138199|gb|EDY70006.1| GA25805 [Drosophila pseudoobscura pseudoobscura]
          Length = 18482

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 154   WRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             W+               I+  L+ L  +  E + W   Q     GY  +     +  Q +
Sbjct: 17737 WKNVCSQSAERKQRILSIWNLLQSLIKQTAEHKNWLGKQETQLAGY--ERDHKSSGKQKL 17794

Query: 212   DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKL 269
             +  + +L  +L+ L    V + R LE+    L + TG+  E++ + T     +LS  ++L
Sbjct: 17795 EERQKELRSKLDELDSQSV-NLRHLEQTYAKLTMGTGVEPENIQKLTLPTKVMLSKWRQL 17853

Query: 270   TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL-GASRTGRWSGCVFPPQN 328
             TP+   + +   + ++          EA  S   ++  L+ L  A+   + +G   P   
Sbjct: 17854 TPRCHALLDAIDKDAKVLREFHTAQQEATQSLTAIQKALEQLPSATAEDQQNGRAEPKAV 17913

Query: 329   LPRPSRSHEELDQI 342
             L R      +L   
Sbjct: 17914 LQRLESLERKLQDA 17927


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 29/127 (22%)

Query: 9   ETRSPIDLTKCGICK---------YAEDVC-------VILFAFGFDDHPVELWDCVHD-- 50
           E  + +D+   G+ +         Y  D           L     D  PV +     D  
Sbjct: 20  EGYAVVDVETTGLARDDRIVSAAVYQLDARGAVQDHWYTLVNPQRDPGPVWIHGLTSDTL 79

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                   +   L + L+     +VAHN+ F+ ++L   +       P+ + +CT+ L++
Sbjct: 80  ADAPLFSEIADELAQHLD--GRVLVAHNAVFDWSMLAREYARAGSAAPVRQRLCTIALSK 137

Query: 102 SNGLPSA 108
             GLP  
Sbjct: 138 ELGLPLP 144


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 25/123 (20%)

Query: 11  RSPIDLTKCGICK---------Y-------AEDVCVILFAFGFDDHPVELWDCVHDPVMP 54
            + +D+   G+ +         Y        ED    L     D  PV +       +  
Sbjct: 40  YAVVDVETTGLARDDRIVSAGVYQLDALGRVEDHWYTLVNPERDPGPVWIHGLTTGVLKD 99

Query: 55  QVLKEALENT------DVTIVAHNSYFERTVLKACFNLD---IPIHRWICTLVLARSNGL 105
             L + + +       D  +VAHN+ F+ ++L   +       P+ + +CT+ L++  GL
Sbjct: 100 APLFKDISDELSARLADRVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIALSKELGL 159

Query: 106 PSA 108
           P  
Sbjct: 160 PLP 162


>gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
 gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
          Length = 189

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 46  DCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVL 99
           D    P  P+V   ++E     D  ++AHN+ F+ +VLK     F ++ P+++ + TL  
Sbjct: 69  DVKDAPTFPEVWEHIQEFFT-PDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQTLDTLKT 127

Query: 100 ARSN--GLP-SALKAVGEALKLSSQK 122
           +R      P   L  + + L +    
Sbjct: 128 SRQLFPAFPNHKLNTICDQLNIDLHH 153


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 29/125 (23%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD-- 50
            + +D+   G+ +  +D  +    +  D                    PV +     D  
Sbjct: 19  YAVVDVETTGLAR--DDRIISAAVYRLDALGNVEDHWYTLVNPERDPGPVWIHGLTSDVL 76

Query: 51  ---PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLD---IPIHRWICTLVLARSN 103
              P+ P+V +E      D  +VAHN+ F+ +++   +       P+ + +CT+ LA+  
Sbjct: 77  EGAPLFPEVAEELSARLADRVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIALAKEL 136

Query: 104 GLPSA 108
            LP  
Sbjct: 137 RLPLP 141


>gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
 gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
          Length = 204

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 50/180 (27%), Gaps = 35/180 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    +   + L      D    L            L   L +  V  + H  
Sbjct: 22  IDTETMGLDPRRD--RLCLVQLSSGDGNAHLVQIAKGQREAPNLARMLADPKVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARS-------NGLPSAL-KAVGEALKLSSQKMEE 125
            F+   L+A F +        CT + ++        +GL   L + VG  +    Q  + 
Sbjct: 80  RFDIAALEAAFGVVTKP--VWCTKIASKMVRTYTDRHGLKYLLSELVGVDISKQQQTSDW 137

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
           G                         E      EY   DV     +   LE   ++E  L
Sbjct: 138 GA-----------------------AELSEAQLEYAASDVLYLHALKAELEKRLAREGRL 174


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 25/148 (16%)

Query: 4   LFIDFETRSPIDLTKC--GICKYAED-------------VCVILFAFGFDDHPVELWDCV 48
           L IDFET +    + C  G+C+  E+               +    F    H +   D V
Sbjct: 8   LAIDFETANEQRASACSIGLCR-VENGRVVRTAEYLIRPPELRFTPFTIAIHGIRPEDVV 66

Query: 49  HDPVMPQVLKEALENT--DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV---LA 100
             P  P  + +A+        ++AHN+ F+ +VL+A      L +P H ++CTLV    A
Sbjct: 67  DAPEFP-DIWDAMRPELEGAVLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVAARRA 125

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKE 128
             +     L  +     +  +    G +
Sbjct: 126 WPDLEKHRLNHLARQFGIELEHHRAGSD 153


>gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis
           ATCC 23457]
 gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90]
          Length = 332

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
 gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
          Length = 178

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 21/143 (14%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL-----FAFG-FDDHPVELWDC 47
           M  + +DFET      S   L    +   + A++   ++     F +     H +   D 
Sbjct: 1   MNFIAMDFETANGKRYSACSLALTIVRNGQIADEFYTLINPHTKFFWRNTQIHGIHERDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P  P+V +        D  ++AHN+ F+ +VL+     +N+++P ++ + T+  +R 
Sbjct: 61  QNAPDFPEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDTVASSRQ 120

Query: 103 N--GLP-SALKAVGEALKLSSQK 122
              GL    L  V +AL +    
Sbjct: 121 LIPGLTNYKLNTVCDALNIDLHH 143


>gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
 gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 179

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 21/143 (14%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL-----FAFG-FDDHPVELWDC 47
           M  + +DFET      S   L    +   + A++   ++     F +     H +   D 
Sbjct: 2   MNFIAMDFETANGKRYSACSLALTIVRNGQIADEFYTLINPHTKFFWRNTQIHGIHERDV 61

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P  P+V +        D  ++AHN+ F+ +VL+     +N+++P ++ + T+  +R 
Sbjct: 62  QNAPDFPEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDTVASSRQ 121

Query: 103 N--GLP-SALKAVGEALKLSSQK 122
              GL    L  V +AL +    
Sbjct: 122 LIPGLTNYKLNTVCDALNIDLHH 144


>gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
 gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
          Length = 332

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 332

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
 gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
          Length = 332

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99]
 gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19]
 gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99]
 gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
          Length = 332

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 332

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 332

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEIARITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+   ++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWACS 185


>gi|295691424|ref|YP_003595117.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
 gi|295433327|gb|ADG12499.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
          Length = 205

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 21/152 (13%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIH 91
                 D    +            LK  L +  +  + H   F+  + +    +   P++
Sbjct: 40  VQLSSGDGDAHVVRLSRPDYDCPNLKALLTDPAILKLFHFGRFDIAMFQLHLGVVTAPVY 99

Query: 92  RWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                  LAR+      LK V  E L +   K ++  +                      
Sbjct: 100 CTKIASKLARTYTDRHGLKDVTRELLGVELSKAQQSSDW-------------------GS 140

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                    Y   DV     + ++L  +  +E
Sbjct: 141 ASLSADQVAYAASDVLHLHGLRQKLNAMLERE 172


>gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
 gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
          Length = 228

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVL 99
           D + D      + +A  +   D  +V HN+ F+   L A         IP  + I TL +
Sbjct: 62  DFLRDKPKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAIDTLDI 121

Query: 100 A--RSNGLPSALKAVGEALKLSS 120
           A  R  G P++L A+     + +
Sbjct: 122 ARKRFPGSPASLDALCRRFGIDN 144


>gi|330813574|ref|YP_004357813.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486669|gb|AEA81074.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 205

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 17/145 (11%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
            D  V +     +      L + L + ++  +AH + FE  +LK   N  I      CT 
Sbjct: 47  GDDEVYIVQFDRNNYKSPNLCKILNDNNILKIAHFARFEMGILKYYLNAKI--ENIYCTK 104

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           + A   G         +   L        KEL+         +   D    +  E     
Sbjct: 105 I-ASKLGRTYT-----DKHGLYDIT----KELLN--ITLNKSQQSSDWGLKDLSEEQ--- 149

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKE 182
            +Y   DV    ++ ++L+ +  +E
Sbjct: 150 KQYAALDVLYLHKLKEKLDLMLRRE 174


>gi|148747813|ref|YP_001285779.1| DNA polymerase [Phormidium phage Pf-WMP3]
 gi|146230046|gb|ABQ12454.1| DNA polymerase [Phormidium phage Pf-WMP3]
          Length = 220

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 9/63 (14%)

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            E    K F  GED++       + +         R I K +     +  GA      AS
Sbjct: 10  DEPRLSKVFVDGEDVHQFFA-DIYGID--------RKIAKNVTFGYAFGAGATKMAATAS 60

Query: 454 TTG 456
             G
Sbjct: 61  RGG 63


>gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 232

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 56  VLKEALEN--TDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVLARSN--GLPS 107
            L +A  +   D  I+AHN+ F+R  +               RW+ TL LAR    G+ +
Sbjct: 72  DLAQAFIDFVGDAPIIAHNASFDRGFINMELERLGLDPTDPDRWVDTLELARYKFPGMAN 131

Query: 108 ALKAVGEALKLS-SQKMEEGKELIARF 133
           +L A+ +   +S +++ + G  L AR 
Sbjct: 132 SLDALCKRYNISLAERDKHGALLDARL 158


>gi|259416057|ref|ZP_05739977.1| ribonuclease D [Silicibacter sp. TrichCH4B]
 gi|259347496|gb|EEW59273.1| ribonuclease D [Silicibacter sp. TrichCH4B]
          Length = 385

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 23/161 (14%)

Query: 24  YAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
           Y   +C+I  AF  D      L D +   +  + L E   N DV  V H +  +  +   
Sbjct: 35  YYSKLCLIQIAFRGDGKTDAVLVDPLSSDLSLEPLYELFRNEDVVKVFHAARQDLEIF-- 92

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHE 140
             +  +       T V A   G    +                 + L+ + CK   +   
Sbjct: 93  WVDASVFPKPLFDTQVAAMVCGFGEQVGY---------------ETLVRKICKQGLDKTS 137

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
              D ++    +A +    Y   DVT  R+I++ L     K
Sbjct: 138 RFTDWSRRPLSDAQKT---YALADVTHLRQIYEHLRKELDK 175


>gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
 gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
          Length = 209

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 22/197 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D    G+    + +C++          V              LK+ LE T +  V H +
Sbjct: 29  VDTETMGLLPQRDRLCLVQLCNS--QGKVTAICIAKGQTEAPNLKQLLEATHILKVFHFA 86

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   L+    + + P+        LAR+      LK V    +L   ++++  +    
Sbjct: 87  RFDVATLRHNLEIQVQPVFCTKIASKLARTYTNLHGLKDV--VQELEQVELDKSAQ---- 140

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--QELWYLDQ 190
                + +     N             Y   DV     + ++L  +  +E   EL     
Sbjct: 141 -----SSDWGNAVNLS------ETQLSYAANDVRYLLNVQQKLTQMLEREGRWELAQQCF 189

Query: 191 TINDRGYCVDVALAHTL 207
            +      +D+     L
Sbjct: 190 QVLPTLVSLDLLQFKDL 206


>gi|188585233|ref|YP_001916778.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349920|gb|ACB84190.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 170

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIH 91
           +     P ++ D      + + +   LEN    +VAHN+ F+ +VL+      +LD P  
Sbjct: 27  YIHGIKPEDVRDEPDFSEIWREISTYLENN--LVVAHNASFDISVLRHVLDLYDLDYPQF 84

Query: 92  RWICTLVLA---RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
            ++CT  LA     +     LK++ + L +  +  +  ++  A  C
Sbjct: 85  DYLCTKKLAEKQWPHLDKYGLKSIAKFLDVKFKHHDAMED--AYAC 128


>gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 208

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 33/169 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D   ++            L   LE+     + H  
Sbjct: 26  IDTETLGLVPRRDRLCV--VQLSPGDGTADVIRIASGQKEAPNLVALLEDPTHQKIFHYG 83

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR-------SNGLPSALKAVGEALKLSSQKMEEG 126
            F+  VL   F +        CT + +R        +GL   LK   E L +   K ++ 
Sbjct: 84  RFDIAVLFHTFGVTTNP--VFCTKIASRLIRTYTDRHGLKDNLK---EMLDVDISKAQQS 138

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +  A                           EY   DV     +  +L
Sbjct: 139 SDWAAETLSPAQ-------------------LEYAASDVLYLHALRDKL 168


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENT------DVTIVAHNSYFERTVLKACFNLD---I 88
           D  PV +       +    L + + +       D  +VAHN+ F+ ++L   +       
Sbjct: 62  DPGPVWIHGLTTGVLKDAPLFKDISDELSARLADRVLVAHNAAFDWSMLAREYARAERVA 121

Query: 89  PIHRWICTLVLARSNGLPSA 108
           P+ + +CT+ L++  GLP  
Sbjct: 122 PVRQRLCTIALSKELGLPLP 141


>gi|21328703|gb|AAM48709.1| 3'- 5' exonuclease family protein [uncultured marine
           proteobacterium]
          Length = 204

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 35/177 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D    L            L   LE+ +V  + H  
Sbjct: 22  IDCETMGLNPKRDRLCV--VQLSSGDGHAHLVQVAKGQTAAPNLCRMLEDPNVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARS-------NGLPSAL-KAVGEALKLSSQKMEE 125
            F+   +K  F          CT + +R        +GL + L + +   +    Q  + 
Sbjct: 80  RFDIAAMKEAFGALTAP--VYCTKIASRMTRTYTDRHGLKNLLQELLCVDISKQQQSSDW 137

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           G                         +  +   EY   DV     + +RL  +  +E
Sbjct: 138 GA-----------------------ADLTKAQVEYAASDVLYLHALRERLNEMLIRE 171


>gi|156742984|ref|YP_001433113.1| exonuclease-like protein [Roseiflexus castenholzii DSM 13941]
 gi|156234312|gb|ABU59095.1| exonuclease-like protein [Roseiflexus castenholzii DSM 13941]
          Length = 168

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 28/177 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M   ++D ET     ++  GI +              D   ++L       V    L +A
Sbjct: 1   MR-AYLDIETAFDGAISVIGIYR-------------SDFGAIQLI---GGGVRDTALYDA 43

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKLS 119
           LE  +  +  + S F+  V++    +D+      C L+   R  GL   LK V E L + 
Sbjct: 44  LEGVNTLVTFNGSSFDLPVIRKRLLVDLKRDFDHCDLMHICRRRGLRGGLKVVEEHLGI- 102

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRL 175
                     +++   G     L+DR +      A R    Y   DV     + +RL
Sbjct: 103 --------RRVSQGLNGRDALYLWDRYEKQGDHSALRTLLTYNYEDVINLAILDERL 151


>gi|322832720|ref|YP_004212747.1| ribonuclease D [Rahnella sp. Y9602]
 gi|321167921|gb|ADW73620.1| ribonuclease D [Rahnella sp. Y9602]
          Length = 373

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 37  FDDHPVELWDCVHDPVMP----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           FD   + L D      +P    Q   + L + DV    H    +  V    F   +    
Sbjct: 47  FDGERLTLID-----PLPITAWQPFIDLLVDPDVIKFLHAGSEDLEVFLNAFG--VMPSP 99

Query: 93  WICTLVLARSNGLPSALK---AVGEALKLSSQKMEEGKELIAR 132
            I T +LA  +G P +      V E   +   K E   + IAR
Sbjct: 100 LIDTQILAAFSGRPLSCGFARLVAETTGVELDKSESRTDWIAR 142


>gi|319405135|emb|CBI78741.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 206

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D   ++            L   LE+  +T + H  
Sbjct: 24  IDTETLGLQPHRDRLCV--VQLSSGDGTADIIQIAKGQNRAPNLVTLLEDKKITKIFHFG 81

Query: 74  YFERTVLKACFNLDIP-IHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+  +L   F +    +        L R+      LK +  E L ++  K ++  +  A
Sbjct: 82  RFDLAILAHTFAVMPDVVFCTKIASKLTRTYTDRHGLKEICSELLNVNISKQQQSSDWAA 141


>gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 208

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 49/186 (26%), Gaps = 45/186 (24%)

Query: 11  RSPIDLTKCGICKY----AEDVCVI----------LFAFGFDDHPVELWDCVHDPVMPQV 56
               D++     +Y    A D   +          +      D   ++            
Sbjct: 7   YHEGDISTADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKEAPN 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-------SNGLPSAL 109
           L   LE+     + H   F+  VL   F +        CT + +R        +GL   L
Sbjct: 67  LVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTP--VFCTKIASRLIRTYTDRHGLKDNL 124

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           K   E L +   K ++  +  A                           EY   DV    
Sbjct: 125 K---EMLDIDISKTQQSSDWAAETLSPAQ-------------------LEYAASDVLYLH 162

Query: 170 EIFKRL 175
            +  +L
Sbjct: 163 ALRDKL 168


>gi|85705765|ref|ZP_01036862.1| exonuclease, putative [Roseovarius sp. 217]
 gi|85669755|gb|EAQ24619.1| exonuclease, putative [Roseovarius sp. 217]
          Length = 203

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 4/118 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    L            L+  L + +V  + H  
Sbjct: 22  IDCETMGLHPHRDRLCV--VQLSGGDGHAHLVQVAKGQTSAPNLERLLTDPNVLKLFHFG 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKA-VGEALKLSSQKMEEGKEL 129
            F+   +   F  L  P++       L R+      LK  + E L +   K ++  + 
Sbjct: 80  RFDIAAMHNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQELLNIDISKQQQSSDW 137


>gi|332559626|ref|ZP_08413948.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332277338|gb|EGJ22653.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 204

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 45/170 (26%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D    L            L+  L +  V  + H  
Sbjct: 22  IDTETMGLDPRRDRLCV--VQLSAGDGDAHLLQIERGQTSAPNLERLLTDPQVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   LK  F +        CT + ++               L+L    + + ++    
Sbjct: 80  RFDIAALKRAFGVRTEP--VWCTKIASKMVRTFTDRHGLKYLLLELVGVDVSKQQQTSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                T                    +Y   DV     +   LE    +E
Sbjct: 138 GAAELT----------------DAQKDYAASDVLHLHRLKDELEARLLRE 171


>gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
 gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
          Length = 297

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 36/144 (25%)

Query: 9   ETRSP--IDLTKCGICKYAEDV---CVILFAFGFDDHPVELWD----------------- 46
           ETR+   +D+   G+    +++    ++ F +  D   VE+ +                 
Sbjct: 39  ETRTGLMVDVETTGLDPDRDEIIELAMVPFRYALDGTVVEVLEPFDRLREPSKPISSEIT 98

Query: 47  ---------CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
                         + P  +          ++AHN+ F+R  L+  F+       W C++
Sbjct: 99  VLTGITDAMVAGKSIDPSEV-TMFAAPAAVVIAHNAAFDRRFLER-FSPVFSTKPWACSM 156

Query: 98  ---VLARSNGLPSALKAVGEALKL 118
                A      + L  +  AL  
Sbjct: 157 SEIDWAAEGFEGAKLSYLAMALGF 180


>gi|241958494|ref|XP_002421966.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223645311|emb|CAX39967.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 895

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 60/174 (34%), Gaps = 17/174 (9%)

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGY 197
            +      +     +   ++  ++ ++L  LS             QE   +++ I     
Sbjct: 129 KSMESKLEMQTVENEYLKSIKLDLEEKLHKLSFEHQELKNEFELIQEELEINREIEREME 188

Query: 198 CVDVALAH-TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
            +D         +++  +  +L+  L  LT     +   L++    L  E  L++ +L +
Sbjct: 189 SLDSDHYSPGDVRMIFEKNRRLEDTLALLTRNSKETENKLKQELEHLQCEQ-LNMNELQK 247

Query: 257 T-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
                 +  R+L    + T    ++       +     K++TL+  ++    + 
Sbjct: 248 KLDQAESVVRMLQERIETTEDMDKMMERLTVENEDLTNKIHTLMMTIDELNEIH 301


>gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 183

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 46  DCVHDPVMP---QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH---RWICTLVL 99
           D  + P  P   + +   L +  V  VAHN+ F+ + ++    L         + C+L  
Sbjct: 63  DTAYAPTFPKVWEEITTYLRDCPVL-VAHNAAFDMSCIRHTLQLHHLPCPDIDYYCSLRA 121

Query: 100 ARS 102
           AR 
Sbjct: 122 ARH 124


>gi|194173081|ref|YP_002003725.1| DNA polymerase [Escherichia phage rv5]
 gi|114796119|gb|ABI79293.1| DNA polymerase [Escherichia phage rv5]
          Length = 775

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 13/136 (9%)

Query: 326 PQNLPRPSRSH--EELDQIITHLPTSITSD------PDPLQIISDCVRSCVIASEGKKLV 377
             N PR    H        +T+      S       P P  ++   +RS      G   +
Sbjct: 544 LLNHPRLKIDHKLPAKSSGLTNTSRQKHSICANMPKPSPKVVMGKEMRSLWGVPPGYFEI 603

Query: 378 VADLAGIEARVLAW--MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
             D + +E  + AW     +        +  D +         VA  +V+   R  GK +
Sbjct: 604 GIDGSNLEQLIGAWGAFEFDNGLYYDVVSNGDAHQNNAEAYTKVAGREVS---RNDGKPI 660

Query: 436 ELALGYQGGAKAFQKM 451
              + Y         M
Sbjct: 661 TYGVMYGAQKDKVADM 676


>gi|332716830|ref|YP_004444296.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325063515|gb|ADY67205.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 208

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 48/169 (28%), Gaps = 33/169 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D   ++            L   L +     + H  
Sbjct: 26  IDTETLGLVPRRDRLCV--VQLSPGDGTADVIRIAAGQKEAPNLTHMLADPARQKIFHYG 83

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR-------SNGLPSALKAVGEALKLSSQKMEEG 126
            F+  VL   F +        CT + +R        +GL   LK   E L++   K ++ 
Sbjct: 84  RFDIAVLFHTFGVTTTP--VFCTKIASRLTRTYTDRHGLKDNLK---EMLEVDISKAQQS 138

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +  A                           EY   DV     +  +L
Sbjct: 139 SDWAAEKLSPAQ-------------------LEYAASDVLHLHALRDKL 168


>gi|218783107|ref|YP_002434425.1| hypothetical protein Dalk_5288 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764491|gb|ACL06957.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 248

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 14/125 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            T F+D ET         G+    +   + +    +D    +++  V+   +P    + +
Sbjct: 83  KTAFLDIET--------SGLD--QDMHEITVIGV-YDGQ--KVFSYVNGFNLPDFEID-I 128

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
              D+ I  + + F+   ++  F         I  +   R  G    LK + + L +S  
Sbjct: 129 AEYDMVITFNGAMFDLPFIRRSFPSITLPEGHIDLMHALRKLGYRGGLKKIEKDLGISRG 188

Query: 122 KMEEG 126
           +  +G
Sbjct: 189 EDIDG 193


>gi|329847152|ref|ZP_08262180.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
 gi|328842215|gb|EGF91784.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
          Length = 206

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 19/151 (12%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIH 91
                 D    +            LK  L +  V  + H   F+  +      +D  P++
Sbjct: 39  VQLSAGDGHAHVVRLNRPAYDCPNLKALLVDPSVLKLFHYGRFDIGMFALHLGVDTSPVY 98

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                  LAR+      LK +    +L    M + ++         T E L         
Sbjct: 99  CTKIASKLARTYTDRHGLKDLSR--ELVGVDMSKAQQSSDWGAATLTPEQLA-------- 148

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                   Y   DV     +  +L+ + ++E
Sbjct: 149 --------YAASDVLHLHALKDKLDAMLARE 171


>gi|320544548|ref|NP_001188697.1| Muscle-specific protein 300, isoform I [Drosophila melanogaster]
 gi|318068312|gb|ADV36947.1| Muscle-specific protein 300, isoform I [Drosophila melanogaster]
          Length = 11999

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 12/217 (5%)

Query: 112   VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             VGE L L    + +         + + +      +  N  + W+               I
Sbjct: 11205 VGEVLNLVEMLLNDADSW-----RTQVNTSGLAASAQNLEQRWKNVCSQSAERKARILTI 11259

Query: 172   FKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             +  L+ L   + E + W   Q     G+  D          ++  + +L  +LE L    
Sbjct: 11260 WNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSK--HKLEERQMELRAKLEELESQS 11317

Query: 230   VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSA 287
             V + R LE++   L +  G+  E++ + T     ++S  ++LTP+   + +   + ++  
Sbjct: 11318 V-NLRQLEQIYAKLAMSAGVEPENIQKLTLPTKVMVSMWRQLTPRCHALLDAIDKDAKLM 11376

Query: 288   VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                 N  +EA NS   ++  L+ L ++   + S    
Sbjct: 11377 REFNNAQLEATNSLNAIQKALEQLPSAENQQTSKAEP 11413


>gi|254466427|ref|ZP_05079838.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
 gi|206687335|gb|EDZ47817.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
          Length = 204

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CVI       D    +            L   LE+ +V  + H  
Sbjct: 22  IDCETMGLNPHRDRLCVIQM--SGGDGNAHIVQVEKGQTEAPNLCRMLEDPNVLKLFHFG 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+   +   F  L  P++       L R+      LK +  E L +   K ++  +   
Sbjct: 80  RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQELLGIDISKQQQMSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                               E      +Y   DV    ++ + L+   ++E
Sbjct: 138 -----------------GAEELTEAQLDYAASDVLHLHKLREALDKRLARE 171


>gi|163733026|ref|ZP_02140470.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393561|gb|EDQ17886.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
          Length = 204

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    L            L + LE+ +V  + H  
Sbjct: 22  IDCETMGLHPHRDRLCV--VQLSGGDGKAHLIQIAKGQTEAPNLCKLLEDPNVLKLFHFG 79

Query: 74  YFER-TVLKACFNLDIPIHRWICTLVLARSNGLPSALK-AVGEALKLSSQKMEEGKELIA 131
            F+   +L A      P++       L R+      L   + E L +   K ++  +   
Sbjct: 80  RFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKLLQELLNIDISKQQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                      +Y   DV    ++ + L  + ++E
Sbjct: 138 -----------------GADTLTDAQIDYAASDVLYLHQLREALNTMLTRE 171


>gi|320544546|ref|NP_001188696.1| Muscle-specific protein 300, isoform H [Drosophila melanogaster]
 gi|318068311|gb|ADV36946.1| Muscle-specific protein 300, isoform H [Drosophila melanogaster]
          Length = 11986

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 12/217 (5%)

Query: 112   VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             VGE L L    + +         + + +      +  N  + W+               I
Sbjct: 11205 VGEVLNLVEMLLNDADSW-----RTQVNTSGLAASAQNLEQRWKNVCSQSAERKARILTI 11259

Query: 172   FKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             +  L+ L   + E + W   Q     G+  D          ++  + +L  +LE L    
Sbjct: 11260 WNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSK--HKLEERQMELRAKLEELESQS 11317

Query: 230   VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSA 287
             V + R LE++   L +  G+  E++ + T     ++S  ++LTP+   + +   + ++  
Sbjct: 11318 V-NLRQLEQIYAKLAMSAGVEPENIQKLTLPTKVMVSMWRQLTPRCHALLDAIDKDAKLM 11376

Query: 288   VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                 N  +EA NS   ++  L+ L ++   + S    
Sbjct: 11377 REFNNAQLEATNSLNAIQKALEQLPSAENQQTSKAEP 11413


>gi|258622057|ref|ZP_05717084.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258585671|gb|EEW10393.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 353

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              G    + D    E  + A ++G Q  +  +E G D+Y    A   N
Sbjct: 137 PPTGSVYALLDYEQQEPMIAASLSGCQSLMGMYERG-DVYTQLAADITN 184


>gi|320544542|ref|NP_001188694.1| Muscle-specific protein 300, isoform D [Drosophila melanogaster]
 gi|318068309|gb|ADV36944.1| Muscle-specific protein 300, isoform D [Drosophila melanogaster]
          Length = 12345

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 12/217 (5%)

Query: 112   VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             VGE L L    + +         + + +      +  N  + W+               I
Sbjct: 11564 VGEVLNLVEMLLNDADSW-----RTQVNTSGLAASAQNLEQRWKNVCSQSAERKARILTI 11618

Query: 172   FKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             +  L+ L   + E + W   Q     G+  D          ++  + +L  +LE L    
Sbjct: 11619 WNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSK--HKLEERQMELRAKLEELESQS 11676

Query: 230   VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSA 287
             V + R LE++   L +  G+  E++ + T     ++S  ++LTP+   + +   + ++  
Sbjct: 11677 V-NLRQLEQIYAKLAMSAGVEPENIQKLTLPTKVMVSMWRQLTPRCHALLDAIDKDAKLM 11735

Query: 288   VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                 N  +EA NS   ++  L+ L ++   + S    
Sbjct: 11736 REFNNAQLEATNSLNAIQKALEQLPSAENQQTSKAEP 11772


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 43/181 (23%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVE---------------LW------DCV 48
            + +D+   G+ +  +D  V    +  D    VE               +W      D +
Sbjct: 20  YAVVDVETTGLAR--DDRIVSAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDVL 77

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
               + Q + +          +VAHN+ F+ +++   +       P  + +CT+ LA+  
Sbjct: 78  AGAPLFQDIADEFSQRLDGRVLVAHNAMFDWSMIAREYARARRTAPTRQRLCTIALAKEL 137

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            LP           L + K+E    L A F   +        +     EA+R        
Sbjct: 138 RLP-----------LPNHKLES---LAAHFGVVQRQAHHALDDARVLAEAFRPSLHTAAR 183

Query: 164 D 164
           D
Sbjct: 184 D 184


>gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 222

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 8/86 (9%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           D     +       AL      +VAHN+ F+   L   F       P     CT+   R 
Sbjct: 90  DPARGHL---DAVAALLAGADLVVAHNAAFDLGFLAREFRAAGRPDPARPTYCTMEAYRR 146

Query: 103 NGLPSA--LKAVGEALKLSSQKMEEG 126
            G P +  L AV   +KL+      G
Sbjct: 147 RGEPGSSALDAVCRRVKLARAGARHG 172


>gi|296282303|ref|ZP_06860301.1| hypothetical protein CbatJ_01715 [Citromicrobium bathyomarinum
           JL354]
          Length = 399

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 11/214 (5%)

Query: 122 KMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           K+  G  L   F   ++ +          H     L  +    DV   + +++ +  L  
Sbjct: 130 KLPWGNSLKGYFRSYQSAQSHIQAILDKLHSGRTELQKDNAAIDVE-RQHLWEAMGKLEQ 188

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK-L 239
                  LD+ + D+   +D         I +     + Q  + L   L   +  ++  L
Sbjct: 189 MIHISKTLDERLEDKANELDATDPEKAKAIRETALFYVRQRTQDL---LTQMAVSVQGYL 245

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L  +  + L    +      +S+ +       +   N+    +      +T    ++
Sbjct: 246 ALDLVKKNNVELVKGVDRASTTTVSALRTAV-TVAEAMTNQRLVLKQITALNDTTAGIID 304

Query: 300 SDGRLR----GTLQFLGASRTGRWSGCVFPPQNL 329
           S G+L     G +    A+ T          QN+
Sbjct: 305 STGKLLREQTGKIHEQAAASTIPMQTLQNAFQNI 338


>gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
 gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
          Length = 998

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 42/135 (31%), Gaps = 41/135 (30%)

Query: 46  DCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLA 100
           D   D  +P      L E + +  V  VAHN+ F+RT          +  + WI +L LA
Sbjct: 100 DVA-DAPLPADALAKLVEFIGDAKV--VAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLA 156

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
           R              + L   K     +L+  F                      L    
Sbjct: 157 R--------------IALPRMKSHRLLDLVRAFGAP-------------------LSTHR 183

Query: 161 CKGDVTVTREIFKRL 175
              DV  T  IF+ L
Sbjct: 184 ADADVEATCAIFRIL 198


>gi|242001164|ref|XP_002435225.1| myosin heavy chain, putative [Ixodes scapularis]
 gi|215498555|gb|EEC08049.1| myosin heavy chain, putative [Ixodes scapularis]
          Length = 1019

 Score = 39.0 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 85/249 (34%), Gaps = 38/249 (15%)

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E LKL  Q++   ++ +A+                + +            DV + R +F 
Sbjct: 659 EKLKLREQELRRLQQEMAKLRLPTPPAITSKSRSSSAKRPALAKKTSA--DVNLGRRLFA 716

Query: 174 RLEPLSSKE-QELWYLDQTINDRGYCV-------DVALAHTLNQIVDVERTKLDQELESL 225
            L+    ++ Q + + D  I      V       D      L++ V   ++++D++ + L
Sbjct: 717 SLQEQLEQKAQTIAHKDAEIEQLKERVASLQTVIDQTAKKGLSRQVQRLKSQVDEKEKQL 776

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +      + +L                ++  +  L   + L  +A  +  +  +   
Sbjct: 777 QDAIADLEVKVAQL----------------KSDLRSALEREQFLNDEARLLKEDNEKLRE 820

Query: 286 SAVLKLNTLVEAMNSDGRLR--------GTLQFLGASRTGRWSGCVF----PPQNLPRPS 333
           +         E +    RLR         ++Q + A    R    +       +NL +P 
Sbjct: 821 NCSRASTEKQELIRKLDRLRRPVTPKQIPSIQHMEAETVDRLRKEISMLRGQLRNLDKPE 880

Query: 334 RSHEELDQI 342
           + +E+L+Q+
Sbjct: 881 KPYEQLEQM 889


>gi|24417713|gb|AAN60444.1| nesprin [Drosophila melanogaster]
          Length = 2576

 Score = 39.0 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 12/217 (5%)

Query: 112  VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            VGE L L    + +         + + +      +  N  + W+               I
Sbjct: 1795 VGEVLNLVEMLLNDADSW-----RTQVNTSGLAASAQNLEQRWKNVCSQSAERKARILTI 1849

Query: 172  FKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +  L+ L   + E + W   Q     G+  D          ++  + +L  +LE L    
Sbjct: 1850 WNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSK--HKLEERQMELRAKLEELESQS 1907

Query: 230  VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSA 287
            V + R LE++   L +  G+  E++ + T     ++S  ++LTP+   + +   + ++  
Sbjct: 1908 V-NLRQLEQIYAKLAMSAGVEPENIQKLTLPTKVMVSMWRQLTPRCHALLDAIDKDAKLM 1966

Query: 288  VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                N  +EA NS   ++  L+ L ++   + S    
Sbjct: 1967 REFNNAQLEATNSLNAIQKALEQLPSAENQQTSKAEP 2003


>gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
 gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
          Length = 332

 Score = 39.0 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+  F++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAGADIIIAHNAGFDRPFLER-FSIAFANKPWACS 185


>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
 gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
          Length = 382

 Score = 39.0 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 26/170 (15%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L       H   + D   D +      + L +  +  V H +  +  +      L 
Sbjct: 37  PKLCLIQAATPTHEA-IIDPQADGLDLTPFLDILRDPAIVKVFHAARQDTEI---FVKLG 92

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEA---LKLSSQKMEEGKELIARFCKGETHECLYD 144
                   T V A + G    +   G     LK+   K     +   R            
Sbjct: 93  AMPKPMFDTQVAAMAAGFGDQVAYDGLVRQMLKIDLDKGSRFTDWSRR------------ 140

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
              P           Y  GDVT    ++ +L    ++E  L ++   + D
Sbjct: 141 ---PLSDAQLT----YAIGDVTHLAALYPKLRDRLAREGRLDWVTSEMED 183


>gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
 gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
          Length = 966

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 38/120 (31%), Gaps = 36/120 (30%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           L E + +  V  VAHN+ F+RT          +  + WI +L LAR              
Sbjct: 82  LVEFIGDAKV--VAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLAR-------------- 125

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           + L   K     +L+  F                      L       DV  T  IF+ L
Sbjct: 126 IALPRMKSHRLLDLVRAFGAP-------------------LSTHRADADVEATCAIFRIL 166


>gi|194210911|ref|XP_001917602.1| PREDICTED: phosphodiesterase 4D interacting protein (myomegalin)
           [Equus caballus]
          Length = 2344

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 11/164 (6%)

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            +L    Q ++E +EL+        +            E  R   +    DV + R I +
Sbjct: 441 HSLSHKEQLLQEFRELLQY----RDNSDKTLEANEMLLEKLRQRIQD--RDVALERAIDE 494

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +   L  KE+EL  L   + +R    D  L    + +   E T    E      GL    
Sbjct: 495 KFSTLEEKEKELRQLHLAVRER----DHDLERLRSILSSSEATMQSMESLLRAKGLEVEQ 550

Query: 234 RCLE-KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
                +   WL  E         +     +      L  +  +V
Sbjct: 551 LSATCQNLQWLKEELETKFSHWQKEQEGIIQQLQTSLHDRNKEV 594


>gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42]
 gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42]
          Length = 208

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 33/169 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D   ++            L   LE+     + H  
Sbjct: 26  IDTETLGLVPRRDRLCV--VQLSPGDGTADIIRIAAGQKAAPNLVALLEDPTHQKIFHYG 83

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR-------SNGLPSALKAVGEALKLSSQKMEEG 126
            F+  VL   F +        CT + +R        +GL   LK   E L +   K ++ 
Sbjct: 84  RFDIAVLFHTFGVTTNP--VFCTKIASRLCRTYTDRHGLKDNLK---EMLDVDVSKAQQS 138

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +  A                           EY   DV     +  +L
Sbjct: 139 SDWAAETLSPAQ-------------------LEYAASDVLYLHALRDKL 168


>gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
 gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
          Length = 202

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 26/124 (20%)

Query: 1   MATLFIDFETRSPIDLTKC--GICKYAEDVCVI---------------LFAFGF-DDHPV 42
           M T+ IDFET +    + C  G+  + ED  ++                F        P 
Sbjct: 1   MKTIAIDFETANEERGSACSIGL-AWIEDGEIVRVEERLIRPKDMRFSPFNIAVHGIRPA 59

Query: 43  ELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV 98
           ++ D    P  P V++E +++    T++AHN+ F+ +V++A F       P   ++C++ 
Sbjct: 60  DVEDA---PEFPDVMEEFIDDFHGATMIAHNAAFDFSVMRASFDKYRQSYPDLSYLCSVK 116

Query: 99  LARS 102
           +AR 
Sbjct: 117 IARH 120


>gi|28416396|gb|AAO42670.1| AT10293p [Drosophila melanogaster]
          Length = 1545

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 12/217 (5%)

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           VGE L L    + +         + + +      +  N  + W+               I
Sbjct: 768 VGEVLNLVEMLLNDADSW-----RTQVNTSGLAASAQNLEQRWKNVCSQSAERKARILTI 822

Query: 172 FKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +  L+ L   + E + W   Q     G+  D          ++  + +L  +LE L    
Sbjct: 823 WNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSK--HKLEERQKELRAKLEELESQS 880

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSA 287
           V + R LE++   L +  G+  E++ + T     ++S  ++LTP+   + +   + ++  
Sbjct: 881 V-NLRQLEQIYAKLTMSAGVEPENIQKLTLPTKVMVSMWRQLTPRCHALLDAIDKDAKLM 939

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
               N  +EA NS   ++  L+ L ++   + S    
Sbjct: 940 REFNNAQLEATNSLNAIQKALEQLPSAEDQQTSKAEP 976


>gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
 gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
          Length = 332

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 29/111 (26%)

Query: 14  IDLTKCGI--------------CKYAEDVCVILFAFGFD--DHPVELW------------ 45
           +D    G+               +YA+D  +      F     P +              
Sbjct: 76  VDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGITD 135

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + V    +P+   +AL      I+AHN+ F+R  L+  F++      W C+
Sbjct: 136 EMVKGRTIPRDELDALIAGADIIIAHNAGFDRPFLER-FSIAFANKPWACS 185


>gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510]
 gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510]
          Length = 396

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 27/241 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-L 86
             + L   G  D  V +        +   L   + +  V  V H +  +  +       +
Sbjct: 37  PQLCLVQVGGPDGAVAIDPLAEGIDLTP-LFALMSDPSVLKVFHAARQDVEIFWHLSGQI 95

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
             P+     T V A   G   ++       KL+  ++++                     
Sbjct: 96  PHPLF---DTQVAAMVCGFGESVGYETLVTKLAGARIDKSSRFTDW-------------- 138

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND----RGYCVDVA 202
             +HR        Y   DV   R  +++L+   ++     +L++ +        Y VD  
Sbjct: 139 --SHRPLTERQLTYALSDVIHLRPAYEKLKRRLARSGRSHWLEEEMAILTDPATYRVDPD 196

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT-WLFLETGLHLEDLTETTCQR 261
            ++ L   V   + +    L+ L       ++  ++ ++  L  E  L +     TT   
Sbjct: 197 SSY-LRLKVRTNKPRFMAILKELAAWREREAQRRDQPRSRVLRDEALLEIAAHAPTTVDD 255

Query: 262 V 262
           +
Sbjct: 256 L 256


>gi|254463169|ref|ZP_05076585.1| 3'-5' exonuclease [Rhodobacterales bacterium HTCC2083]
 gi|206679758|gb|EDZ44245.1| 3'-5' exonuclease [Rhodobacteraceae bacterium HTCC2083]
          Length = 203

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CVI       D    L            L + L + +V  + H  
Sbjct: 22  IDCETMGLHPHRDRLCVIQM--SGGDGNAHLVQVAKGQTEAPNLCKMLTDPNVLKLFHFG 79

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARS 102
            F+   ++  F          CT + ++ 
Sbjct: 80  RFDIAAMQNAFGAVTAP--VYCTKIASKL 106


>gi|154246978|ref|YP_001417936.1| DNA polymerase III subunit epsilon [Xanthobacter autotrophicus Py2]
 gi|154161063|gb|ABS68279.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
          Length = 298

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 32/136 (23%)

Query: 14  IDLTKCGICKYAEDV---CVILFAFGFDDHPVELWDCVHD------PVMPQV-------- 56
           +D+   G+    +++    +  F++G D     + D          P++P++        
Sbjct: 47  VDVETTGLDPQRDEIIELAMTPFSYGLDGTIFSVGDSFQGLRQPSEPILPEITAITGITN 106

Query: 57  -----------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL---VLARS 102
                      +           +AHN+ F+R   +  F+       W C+L     A  
Sbjct: 107 EMVAGQIIDPAVVATFAAPASLFIAHNAAFDRRFFER-FSDVFSTKPWACSLSQIDWAAE 165

Query: 103 NGLPSALKAVGEALKL 118
               + L  + +A   
Sbjct: 166 GFQGAKLAYLAQAAGF 181


>gi|194856562|ref|XP_001968777.1| GG25057 [Drosophila erecta]
 gi|190660644|gb|EDV57836.1| GG25057 [Drosophila erecta]
          Length = 3969

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 78/204 (38%), Gaps = 12/204 (5%)

Query: 112  VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            VGE L L    + +         + + +      +  N  + W+               I
Sbjct: 3188 VGEVLNLVEMLLNDADSW-----RTQVNTSGLAASAQNLEQRWKNVCSQSAERKARILTI 3242

Query: 172  FKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +  L+ L   + E + W   Q     G+  D          ++  + +L  +LE L    
Sbjct: 3243 WNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSK--PKLEERQQELRAKLEELESQS 3300

Query: 230  VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSA 287
            V + R LE++   L +  G+  E++ + T     ++S  ++LTP+   + +   + ++  
Sbjct: 3301 V-NLRQLEQIYAKLTMSAGVEPENIQKLTLPTKVMVSMWRQLTPRCHALLDAIDKDAKLM 3359

Query: 288  VLKLNTLVEAMNSDGRLRGTLQFL 311
                N  +EA NS   ++  L+ L
Sbjct: 3360 REFNNAQLEATNSLNAIQKALEQL 3383


>gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
 gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
          Length = 545

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIV-AHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
           D   +P  P+ L + ++      V AHN+ F+ T L        +  P   + CT + AR
Sbjct: 225 DVAGEPSFPEQLAKFVDVVGDLDVVAHNARFDFTALSRACRAEGIPAPKLNFACTYMWAR 284

Query: 102 --SNGLP-SALKAVGEALK 117
               GLP   L  + EA  
Sbjct: 285 QMQLGLPNLKLPTLAEAAG 303


>gi|297155671|gb|ADI05383.1| putative regulator protein [Streptomyces bingchenggensis BCW-1]
          Length = 716

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 69/297 (23%), Gaps = 35/297 (11%)

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +       T V +R       +     AL L     E   EL+           L D  
Sbjct: 182 PLLPGGLSITAVTSRQRMPGLTVDG-CHALHLDPLATEAAVELL--------EVTLADGR 232

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                +  R   E C G     R    RL     ++           +RG      L   
Sbjct: 233 VAAQPDEARALVELCAGLPLAVRVAGARLAARPRRQITTMVR-ALTEERG-----RLEAL 286

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--------LTETT 258
             +     R  LD   + L+           +L   L L  G                T 
Sbjct: 287 AIEGDHNVRAALDLSYQGLSPEA-------ARLYRLLGLHPGPEFGSTVAEAALVRDATD 339

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
               L     L     + +         A  K+            LR  +    A+ T  
Sbjct: 340 VLDALHDANLLVDAGEERYRFHDLVRLHATAKVEEEESPEERAAALRRMVDHYLATATRA 399

Query: 319 WSGCVFPPQNLPRPSRSHEEL-----DQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
                   + + R       +     D     L    +  P+ + +I     +   A
Sbjct: 400 EEIVDPQHRTMARGYGPGPVITTDLGDDAEGALDWLESELPNLMAVIHRARPAGFPA 456


>gi|195137685|ref|XP_002012585.1| GI21398 [Drosophila mojavensis]
 gi|193906395|gb|EDW05262.1| GI21398 [Drosophila mojavensis]
          Length = 183

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 127 KELIARFCKG---ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           KELI  +            Y    PN  E W+   +    DV    ++ K +  L S  +
Sbjct: 109 KELIKYYLAEFLATFQNIGYKGELPNSVEFWQQVTQNNCYDVFQKEDVQKGMHCLDSYVR 168

Query: 184 ELWYLDQTINDRGY 197
           ++ YL       G+
Sbjct: 169 DVKYLLARFEAEGF 182


>gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
 gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
          Length = 230

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSN--GLPSA 108
           + L   LE++ +  VAHN+ F+   L     L         R I T+ +AR    G   +
Sbjct: 75  EELLAFLEDSHL--VAHNARFDFGFLNHELRLCGLPEVSMARMIDTVAIARQLHPGAKHS 132

Query: 109 LKAVGEALKLSS-QKMEEGKEL 129
           L A+     +    +++ G  L
Sbjct: 133 LDALCTRYGIDRSHRIKHGALL 154


>gi|76810908|ref|YP_333055.1| hypothetical protein BURPS1710b_1651 [Burkholderia pseudomallei
           1710b]
 gi|76580361|gb|ABA49836.1| 34L [Burkholderia pseudomallei 1710b]
          Length = 262

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 44/204 (21%)

Query: 2   ATLFIDFETRSPI-----DLTKCGI---CKYAEDVCVILFAFGFDDHPVELWDCV----H 49
             L +D ET SPI      L K  +     ++E  C++ F   + D P  ++       +
Sbjct: 5   RILSLDIET-SPILAYVWSLWKQNVSLGQIHSE-WCILSFCAKWLDDPRVIYHDTSRQRN 62

Query: 50  DPVMPQVLKEA--LENTDVTIVAHNS-YFE-RTVLKACFNLDIPIHR---WICTLVLARS 102
                +++++   L +    +VA N   F+ + +      L +P       + TLV AR 
Sbjct: 63  KEDDRRIVRKLWRLLDQADIVVAQNGIKFDAKKIQARFLLLGMPPPSPFKVVDTLVEARK 122

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC--------LYDRNKPNHREAW 154
           +               +S K+E   E   + CK    +         L+      + EAW
Sbjct: 123 H------------FGFTSNKLEWLTE---KLCKKHKKKKHAKFPGFELWRECLKGNLEAW 167

Query: 155 RLFGEYCKGDVTVTREIFKRLEPL 178
               EY   DV    E++  L P 
Sbjct: 168 AEMKEYNVEDVLSLEELYLVLRPW 191


>gi|331233495|ref|XP_003329408.1| hypothetical protein PGTG_11158 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309308398|gb|EFP84989.1| hypothetical protein PGTG_11158 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 862

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 70/195 (35%), Gaps = 8/195 (4%)

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK---TWLFLETGLHLEDLTET 257
             L   +   ++ +  + ++E+  LT  +   +  +++L+     L LE  L +      
Sbjct: 59  SDLHVGILDTIEAQAKEAEKEVSQLTQSVNELTEQIKQLRIRLGHLDLEAQLVIPH---E 115

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
                +   KK+     Q+  +R     + + +L +    +          +   + R G
Sbjct: 116 ALVPKIERIKKILDDLSQIKFDREIQVENLLKRLESFAPILGDQFIQDAITKSNQSLRIG 175

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           +  G     + + R  +  EE +Q ++    ++    + +  +   +   +  +      
Sbjct: 176 QMFGANLSLEYISRLDKQSEEFEQEVSRRGQTLLDHINMIFNLWGHL--GISPASPSANP 233

Query: 378 VADLAGIEARVLAWM 392
             D + I+  VLA +
Sbjct: 234 SLDHSDIDPVVLAHL 248


>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 611

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 36  GFDDHPVELWDCVH----DPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNL 86
           G D  PV +              Q +   L+    D  +VAHN+ F+   L         
Sbjct: 64  GVDPGPVHVHGLTRERLAGAPQYQDVAGTLDELVRDRVLVAHNARFDWGFLAAESDRARA 123

Query: 87  DIPIHRWICTLVLARSNGLPSA 108
            + + R +CTL L+R   LP +
Sbjct: 124 PLSVDRRLCTLALSRRLDLPVS 145


>gi|297287934|ref|XP_002803264.1| PREDICTED: myosin-2-like [Macaca mulatta]
          Length = 1828

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 70/456 (15%), Positives = 144/456 (31%), Gaps = 55/456 (12%)

Query: 185  LWYLDQTINDRGYCVDVALAHTLNQIVDVER--TKLDQELESLTYGLVSSSRCLEKLKTW 242
            L    Q   +    +D +       + +  +  T  ++ LE L      +    E++K  
Sbjct: 1387 LAEWQQKCEELQVELDNSQKECRMYMTESFKIKTAYEESLEHLESVKKENKTLQEEIKDL 1446

Query: 243  L--FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            +    E G  + +L +   +  +   +          +  +  S+   ++L       + 
Sbjct: 1447 IDQLGEGGRSVHELQKLKKKLEMEKEELQVALEEAESSLEVEESKVIRIQLELAQVKADI 1506

Query: 301  DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
            D R+    +   A+R G  +      Q     +R HEEL +        ++     LQ  
Sbjct: 1507 DRRIHEKEEEFEATRLGPCAPQDLQVQMD-EDARQHEELREQYNLQERRLS----LLQTE 1561

Query: 361  SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFN 418
             + VR  +  SE  +KL+  ++  I  R        Q  L        D+   +      
Sbjct: 1562 LEEVRCALEGSERSRKLLEQEMVEITERHNEINIQNQSLLVVKRKLESDVQRIS------ 1615

Query: 419  VAPAQVTKDQRA---IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                ++  + R+     K                +MA           H +      + +
Sbjct: 1616 NEHEELISEFRSADERAK---------KAMTDATRMAEEL---RQEQDHCMHLEKIKKNY 1663

Query: 476  EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
            E      +   E   + A++           K+   +  +R+ EL  EL    +Q  E  
Sbjct: 1664 EVTIKDLQAKMEEAEQLALKGG---------KRTIMKLEARIKELETELDGEQKQHAETV 1714

Query: 536  KAIIARKRRDVPLVYMKKDKN-------NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
            K +   +RR   L++  ++ N        L+  L +   +  R +       N T  +  
Sbjct: 1715 KTLRKNERRLKELIFQTEEDNKTNQRMQELVEKLQNKLKIYKRQIEEAEDQANQTLARYR 1774

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                   K    +  A  R  +AE  +N  +  + +
Sbjct: 1775 -------KTVHELDDAEERAGMAETALNKLRTRHRV 1803


>gi|302760177|ref|XP_002963511.1| hypothetical protein SELMODRAFT_405426 [Selaginella moellendorffii]
 gi|300168779|gb|EFJ35382.1| hypothetical protein SELMODRAFT_405426 [Selaginella moellendorffii]
          Length = 617

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 77/230 (33%), Gaps = 14/230 (6%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++  D   +  R ++    ++ K +      D Y        +     +  D R   K  
Sbjct: 245 MMDEDFPYMMDRDMSRSRADKDKTETITRAGDPYT-----MGDKDLDTMDSDMRRSRKQA 299

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT-NSAPEEWEDAENFCRWMQENHPEHAI 494
            +A  +   A+    + +      +   + V+      +++  ++ +CR +    P + +
Sbjct: 300 RIANAWSVQAETILGIKAVVKKASDAGYYAVERCYRMDDKFNSSKQYCRVLGMKQPLNFL 359

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +    + CE+      Q H+ V   W    +A    +       A  R D     +   
Sbjct: 360 GEEVNISECEQ------QVHTPVLAQWEPKRRAI--AVPPIYPPPASWRNDTNFSEINYV 411

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
           +     ++P+ R +         S+ +T   ++     Y  +L    +QA
Sbjct: 412 QGLTDCVVPAARDMCLAGTDFIPSFNDTIDSEVGILEAYLFQLKNLYIQA 461


>gi|315500766|ref|YP_004089567.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
 gi|315418778|gb|ADU15416.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
          Length = 324

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 30/93 (32%)

Query: 14  IDLTKCGICKYAEDV--CVILFAFGFDDHPV-----ELWDCVHDPVMPQ----------- 55
           ID    G+ K AED    +   AF FDD  V     E++  + DP  P            
Sbjct: 75  IDTETTGLNK-AEDAVIEIGAIAFRFDDRGVVGDLIEVYGALQDPGFPIPANITELTGID 133

Query: 56  -----------VLKEALENTDVTIVAHNSYFER 77
                       + EAL      I+AHN+ F+R
Sbjct: 134 DAMVKGQSIDFHVLEALIKPADLIIAHNAAFDR 166


>gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
 gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
          Length = 239

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVLARSN--GL 105
            + +   + +E++   +VAHN+ F+   + A F++     +   R + TL +AR    G 
Sbjct: 72  EIAEEFIDFIEDS--PMVAHNAEFDVRFINAEFSMLNFAPLAPARIVDTLAIARRLHPGS 129

Query: 106 PSALKAVGEALKLS-SQKMEEGKEL 129
           P++L A+ +   +  S++ + G  L
Sbjct: 130 PASLDALCQRYGIDLSRRDKHGALL 154


>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 330

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 29/125 (23%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVH--- 49
            + +D+   G+ +  +D  +    +  D                    PV +        
Sbjct: 23  YAVVDVETTGLAR--DDRIISAAVYRLDARGEVEDHWYTMVNPERDPGPVWIHGLTSEAL 80

Query: 50  -DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
               + Q + E          +VAHN+ F+  ++   +     ++P+ + +CT+ L++  
Sbjct: 81  EGAPLFQDIAEEFTTRLEGRVLVAHNAVFDWQMIAREYARAQREVPVRQRLCTIALSKEL 140

Query: 104 GLPSA 108
           GLP  
Sbjct: 141 GLPLP 145


>gi|194760665|ref|XP_001962559.1| GF14380 [Drosophila ananassae]
 gi|190616256|gb|EDV31780.1| GF14380 [Drosophila ananassae]
          Length = 8366

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 7/165 (4%)

Query: 151  REAWRLFGEYCKGDVTVTREIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             + W+               I+  L+ L   + E + W   Q     GY  D   +H+ N
Sbjct: 7622 EQRWKNVCNQSAERKQRILTIWNLLQQLIKLTAEHKNWLGKQEGQLTGYERDQK-SHSKN 7680

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSN 266
            ++ + ++ +L  +LE L    V + R LE++   L +  G+  E++ + T     ++S  
Sbjct: 7681 KLEERQK-ELKAKLEELESQSV-NLRQLEQIYAKLTMSAGVEPENIQKLTLPTKVMVSMW 7738

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
            ++L P+   + +   + ++      N  +EA NS   ++  L+ L
Sbjct: 7739 RQLIPRCQALLDAIDKDAKILREFNNAQLEATNSLNAIQKALEQL 7783


>gi|63101968|gb|AAH95643.1| LOC553451 protein [Danio rerio]
          Length = 977

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 73/236 (30%), Gaps = 36/236 (15%)

Query: 29  CVILFAFGFDDHPVELW-----------DCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
              L  F  D   V+ W           D  HD    Q L +  ++    + ++     R
Sbjct: 742 ACSLHQFQADADDVDTWTLDALRIVSTADVGHDEFSTQALVKKHKDASTEVASY-----R 796

Query: 78  TVLK--ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
            V+         +P  +     V  R  G+    K V E  +L  Q +++   L   F  
Sbjct: 797 PVIDALHEQAQTLPPEQAKSANVSERLAGIEERYKEVSELTRLRKQALQDALALYKMFS- 855

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
                      + +  E W    E        + EI ++LE L   +     L+  +N++
Sbjct: 856 -----------EADACELWIDEKEQWLN----SMEIPEKLEDLEVIQHRFESLEPEMNNQ 900

Query: 196 G--YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
                V   +A  L          +  + + L          +++ K  L    G+
Sbjct: 901 ASRVAVVNQIARQLIHSGHPSEKDIKAQQDKLNTRWSQFRDLVDQKKESLNSALGV 956


>gi|15790277|ref|NP_280101.1| hypothetical protein VNG1213C [Halobacterium sp. NRC-1]
 gi|10580745|gb|AAG19581.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 326

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 51/165 (30%), Gaps = 8/165 (4%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+   G+ +++  V     +         L        +     +AL +  +    +   
Sbjct: 166 DIETTGLDQHSSVVTT--VSVHRGGDTTTLV---RGSDLTAERLQALLDAPMVASFNGKR 220

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIAR 132
           F+   L+  F+L +     +  +   R   L   LK V   L +   +++  +G+E +  
Sbjct: 221 FDAPFLEHHFDLSLD-SPHLDLMYPCRRLDLTGGLKQVERDLGVDRAEVDDVDGREAVRL 279

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           + +          ++      +         D    R      EP
Sbjct: 280 WRRYAEDNDEAALDRLVTYNQYDTQNLQAILDAVAERLHRDVFEP 324


>gi|213021568|ref|ZP_03336015.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 70

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
           I  +  + A +    +++ VHDE+V E    D +  A  ++ LM 
Sbjct: 3   IAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLME 47


>gi|20564146|ref|NP_620715.1| RNA replication protein [White clover mosaic virus]
 gi|139144|sp|P09498|RDRP_WCMVM RecName: Full=RNA replication protein; AltName: Full=147 kDa
           protein; AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase
 gi|61318|emb|CAA29904.1| unnamed protein product [White clover mosaic virus]
          Length = 1294

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 12/148 (8%)

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                   + +   L +      +  R        GA  +G+        ++L R  R  
Sbjct: 535 LRIGALLKKQSKDWLASFALKTENIERQVLMSVIHGAGGSGKSHAIQTWMRSLNRRDRHV 594

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG-----IEA----- 386
             +           T  P+  Q         +    GK +V  D +      IEA     
Sbjct: 595 TIILPTTDLRNDWTTKVPNLEQANFKTFEKALCQPCGKIIVFDDYSKLPQGYIEAFLAIN 654

Query: 387 --RVLAWMAGEQWKLKAFETGEDLYVTT 412
              +LA + G+  +    E+ ED Y  T
Sbjct: 655 QNVILAILTGDSKQSFHHESNEDAYTAT 682


>gi|320540777|ref|ZP_08040357.1| hypothetical protein SSYM_0069 [Serratia symbiotica str. Tucson]
 gi|320029160|gb|EFW11259.1| hypothetical protein SSYM_0069 [Serratia symbiotica str. Tucson]
          Length = 65

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           AHN++ +RT+      +       + T+V + ++GLP +L  + + L ++ 
Sbjct: 1   AHNNHLDRTISNHA--MPGVAAGDVDTMVRSLAHGLPGSLGDLCDILNVAQ 49


>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 328

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 29/125 (23%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDD------------------HPVELWDCVHD-- 50
            + +D+   G+ +  +D  +    +  D                    PV +     +  
Sbjct: 23  YAVVDVETTGLAR--DDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSEAL 80

Query: 51  ---PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
              P+   + +E      D  +VAHN+ F+  ++   +     + P+ + +CT+ L++  
Sbjct: 81  EGAPLFTDIAEEFAARLADRVLVAHNAVFDWQMIAREYARARREAPVRQRLCTIALSKEL 140

Query: 104 GLPSA 108
           GLP  
Sbjct: 141 GLPLP 145


>gi|257077012|ref|ZP_05571373.1| chromosome partition protein smc [Ferroplasma acidarmanus fer1]
          Length = 1156

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 9/147 (6%)

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           I + LE    +  E   L + INDR   +DV +    +QI++    +  +  + L+    
Sbjct: 358 INRELEKFRQENYENSKLTREINDRLAAIDVEMQQANDQIINDYDIRTIE--QELSGFSR 415

Query: 231 SSSRCLEKLKT--WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            ++   EK+K       +    +++L +     +   ++++     +    R + +    
Sbjct: 416 ENTMNEEKIKEESIKVKDLKWKIDNLKK----NIKEYSEEINEVNKKFLTVRNKLNELVT 471

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +K N  VE  N +  LRG L + G + 
Sbjct: 472 MKSNNDVEIRNKEKELRG-LNYRGTAS 497


>gi|213420856|ref|ZP_03353922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 72

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
           I  +  + A +    +++ VHDE+V E    D +  A  ++ LM 
Sbjct: 5   IAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLME 49


>gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
 gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
          Length = 177

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 46  DCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
           D    P  P+V  +   L   D  +VAHN+ F+ ++LK     
Sbjct: 59  DVAQAPKFPEVWKIIAPLFKEDKLVVAHNAAFDNSILKGTLAY 101


>gi|255601377|ref|XP_002537664.1| DNA polymerase I, putative [Ricinus communis]
 gi|223515546|gb|EEF24720.1| DNA polymerase I, putative [Ricinus communis]
          Length = 71

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLM 651
            +++ VHDE+V E P  + E     L  LM
Sbjct: 18  RMIMQVHDELVLEVPQQELEVVREKLPELM 47


>gi|224103117|ref|XP_002312932.1| predicted protein [Populus trichocarpa]
 gi|222849340|gb|EEE86887.1| predicted protein [Populus trichocarpa]
          Length = 1530

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 71/193 (36%), Gaps = 20/193 (10%)

Query: 120 SQKMEEGKELIA-RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            +K ++G +L   R      +    D N+    + +R        +V +  ++   + P 
Sbjct: 118 KRKQKKGLDLSRWRELVPSDNSLEIDENRKLLNDPFRAS--EVPMEVDIETDLSSSMPPA 175

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
             KE      D  IN+R           L++++          + S  +    + +  + 
Sbjct: 176 KVKESVTSVADMEINNR----------ALSEMLKKREQLNQTVVSSSGFNSHGNEQGSKL 225

Query: 239 LKTWLFLETGLHLEDLTETTCQRV-LSSNKKLTPQAIQVFNNRMRAS------RSAVLKL 291
           L++ +  E    L+ ++        +   +K+ P+ + +   R +         S+   +
Sbjct: 226 LESEIDAENRSRLQSMSAEEIAEAQVEIMEKMNPELLNLLKKRGQEKLKKKNVSSSDEAV 285

Query: 292 NTLVEAMNSDGRL 304
           ++ V+++  + RL
Sbjct: 286 SSQVDSIPIENRL 298


>gi|16127833|ref|NP_422397.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221236653|ref|YP_002519090.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13425349|gb|AAK25565.1| ribonuclease D, putative [Caulobacter crescentus CB15]
 gi|220965826|gb|ACL97182.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 205

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 21/152 (13%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIH 91
                 D    +            LK  L N  V  + H   F+  + +    +   P++
Sbjct: 40  VQLSAGDGDAHVVRLSRPDYDCPNLKALLTNPKVLKLFHFGRFDIAMFELHLGVVTAPVY 99

Query: 92  RWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                  LAR+      LK V  E L +   K+++                  D   P+ 
Sbjct: 100 CTKIASKLARTYTDRHGLKDVTRELLGVELSKVQQSS----------------DWGAPSL 143

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                    Y   DV     +  +L  +  +E
Sbjct: 144 SVDQ---VAYAASDVLHLHGLRLKLNAMLERE 172


>gi|169236009|ref|YP_001689209.1| hypothetical protein OE2740F [Halobacterium salinarum R1]
 gi|167727075|emb|CAP13860.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 250

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 51/165 (30%), Gaps = 8/165 (4%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+   G+ +++  V     +         L        +     +AL +  +    +   
Sbjct: 90  DIETTGLDQHSSVVTT--VSVHRGGDTTTLV---RGSDLTAERLQALLDAPMVASFNGKR 144

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIAR 132
           F+   L+  F+L +     +  +   R   L   LK V   L +   +++  +G+E +  
Sbjct: 145 FDAPFLEHHFDLSLD-SPHLDLMYPCRRLDLTGGLKQVERDLGVDRAEVDDVDGREAVRL 203

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           + +          ++      +         D    R      EP
Sbjct: 204 WRRYAEDNDEAALDRLVTYNQYDTQNLQAILDAVAERLHRDVFEP 248


>gi|149046419|gb|EDL99312.1| dystonin (predicted) [Rattus norvegicus]
          Length = 3769

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 24/230 (10%)

Query: 103  NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK--------PNHREAW 154
              L   +  +   L    +  EE   ++    K       + +              E  
Sbjct: 812  LLLKDKIVELNTKLSKLQKAQEESSAMMQWLQKMNKTASRWRQTPTPADSESVKIQVEQN 871

Query: 155  RLFGEYCKGDVTVTREIFKRLEPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQ 209
            + F    K +V   +E+  +L  L  +     E   W   QT+ +    +D      LNQ
Sbjct: 872  KSFEAELKQNVNKVQELKDKLAELLKENPEAPEAPSWK--QTMAE----MDTKWQE-LNQ 924

Query: 210  IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
            +    + KL++     +  L        +LK WL  +  +       +T   +L++ K+ 
Sbjct: 925  LTIDRQQKLEES----SNNLSQFQTTEAQLKQWLVEKELMVSVLGPLSTDPNMLNTQKQQ 980

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
                +Q F+ R             ++     D  L G ++   A+ T +W
Sbjct: 981  AQILLQEFDTRKPQYEQLTAAGQGILSRPGEDPSLHGIVKEQLAAVTQKW 1030


>gi|170751612|ref|YP_001757872.1| histidine kinase [Methylobacterium radiotolerans JCM 2831]
 gi|170658134|gb|ACB27189.1| histidine kinase [Methylobacterium radiotolerans JCM 2831]
          Length = 638

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 78/223 (34%), Gaps = 16/223 (7%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTIND--RGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           RE+ + L  L+ +++E   L++ + +  RG     A      + +      L+ ++ + T
Sbjct: 169 RELLRSLAELAERQEEAERLNRELAETNRGVVALHAELEDQAERLRQAGASLETQVAART 228

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             L  ++    +L         +  +        + L +  +LT      FNN +   RS
Sbjct: 229 AELAEAN---ARLVAEAAERERMEHDLRQ----SQKLEAVGQLTGGVAHDFNNLLTIIRS 281

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +V  L      +  D R R    ++ A             Q L   +R      ++    
Sbjct: 282 SVDFLRRPD--LPEDRRKR----YMDAVSDTVDRAAKLTGQLLA-FARRQSLKPEVFDVG 334

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
               +       I    +R  V A EG  LV AD+   E  V+
Sbjct: 335 ERLRSVADMLDTITGARIRVRVEAPEGAALVRADVNQFETAVV 377


>gi|99079868|ref|YP_612022.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
 gi|99036148|gb|ABF62760.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
          Length = 204

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 52/170 (30%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV+       D    L            L   L N DV  + H  
Sbjct: 22  IDCETMGLNPHRDRLCVVQM--SSGDGDAHLVQIAKGQTDAPNLTAMLTNPDVLKLFHYG 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
            F+   L   F  L  P++       L R+      LK +     L  Q + + +++   
Sbjct: 80  RFDIAALYHRFGALAAPVYCTKIASRLVRTYTDRHGLKNL--TQDLLGQDISKQQQMSDW 137

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
             +  T   +                +Y   DV     +   L+    +E
Sbjct: 138 GAETLTRAQM----------------DYAASDVLHLHRLRDALDQRLVRE 171


>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
          Length = 354

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 42/123 (34%), Gaps = 14/123 (11%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
             ID     + +Y E +C  L  F      V L D +    +   L   L    V    H
Sbjct: 24  CAIDTEADSLHRYRESLC--LIQFSAKGESV-LIDPLVIEDL-SPLGSYLSEATV--WMH 77

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAV-----GEALKLSSQKMEE 125
            + ++ T+ K  F           T + AR  G     L  +     G  L  SSQK + 
Sbjct: 78  GADYDMTMFKRQFGD--LPKVVYDTQIGARLLGARRFGLGDLVSLYFGVELSKSSQKADW 135

Query: 126 GKE 128
           GK 
Sbjct: 136 GKR 138


>gi|224052691|ref|XP_002192674.1| PREDICTED: similar to Hermansky-Pudlak syndrome 6 [Taeniopygia
           guttata]
          Length = 1019

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 24/145 (16%)

Query: 54  PQVLKEALENTDVTIVAHNS---YFERTVLK--ACFNLDIP-----IHRWICTLVLARS- 102
           P+V K+ L    +  V  N     FE             +P       +++ +     S 
Sbjct: 832 PEVWKKVLCQPQLEEVGQNGIVPLFELICASFLRFKPKWLPSFVELTQQYVSSSWSYSSK 891

Query: 103 NGLPSALKAVGEALKLSSQKMEEGK-----ELIARFCKGETHECLYDRNKPNHREAWRLF 157
            G    +     AL + ++K + G+     EL    C       L   +   H + W+  
Sbjct: 892 EGPEGQVPLYKRALGVLARKSKHGEADDEMELELLLCSKRPKAVLQALHLLIHLKQWQRV 951

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKE 182
            E          E F +L PL +KE
Sbjct: 952 VEVA--------EKFSKLSPLLNKE 968


>gi|139145|sp|P15402|RDRP_WCMVO RecName: Full=RNA replication protein; AltName: Full=147 kDa
           protein; AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase
 gi|61324|emb|CAA34628.1| unnamed protein product [White clover mosaic virus]
          Length = 1294

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 12/148 (8%)

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                   + +   L +      +  R        GA  +G+        ++L R  R  
Sbjct: 535 LRIGALLKKQSKDWLASFALKTENIEREVLMSVIHGAGGSGKSHAIQTWMRSLNRRDRHV 594

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG-----IEA----- 386
             +              P+  Q         +    GK +V  D +      IEA     
Sbjct: 595 TIILPTTDLRNDWTNKVPNLEQANFKTFEKALCQPCGKIIVFDDYSKLPQGYIEAFLAIN 654

Query: 387 --RVLAWMAGEQWKLKAFETGEDLYVTT 412
              +LA + G+  +    E+ ED Y  T
Sbjct: 655 QNVILAILTGDSKQSFHHESNEDAYTAT 682


>gi|84500657|ref|ZP_00998906.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
 gi|84391610|gb|EAQ03942.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
          Length = 204

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV+       D    +            L   L +  V  + H  
Sbjct: 22  IDCETMGLNPHRDRLCVVQM--SGGDGDAHIVQVAIGQDSAPNLCAMLTDPKVLKLFHFG 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+   +   F  L  P++       L R+      LK +  E L +   K ++  +   
Sbjct: 80  RFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQELLGIDLSKQQQSSDW-- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                               E      EY   DV     + + L+   ++E
Sbjct: 138 -----------------GAEELSAAQLEYAASDVLYLHRLREELDARLARE 171


>gi|325964027|ref|YP_004241933.1| ATPase component of various ABC-type transporters with duplicated
           ATPase domain [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470114|gb|ADX73799.1| ATPase component of various ABC-type transport systems with
           duplicated ATPase domain [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 568

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 77/233 (33%), Gaps = 10/233 (4%)

Query: 101 RSNGLPSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           R+NG PS    + + L    L        K+    F  G     L               
Sbjct: 133 RANGRPSGPDDIAKVLSEAGLPDAH-RRAKQYPHEFSGGMRQRALIAIGLSCQPRLLIAD 191

Query: 158 GEYCKGDVTVTREIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDV--E 214
                 DVTV R+I   LE ++++    +  +   +       D  +     Q+V+    
Sbjct: 192 EPTSALDVTVQRQILDHLEGMTAELGTAVLLITHDLGLAAERADKVVVMYRGQVVESGPS 251

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L       T  LV S+  L   +  +  E GL   DL     + V + N        
Sbjct: 252 LELLQNPQHPYTKRLVESAPSLASRRIQVAKEQGLEAADLLAPAVEEVAADNVLQIKDLR 311

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +V+  R    +S+       V+ ++ D +   T   +G S +G+ +      Q
Sbjct: 312 KVYKLRQGLGKSSD---FAAVDGVSFDVKRGTTTAIVGESGSGKSTVAKMVLQ 361


>gi|195147474|ref|XP_002014705.1| GL18808 [Drosophila persimilis]
 gi|194106658|gb|EDW28701.1| GL18808 [Drosophila persimilis]
          Length = 4542

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 154  WRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
            W+               I+  L+ L  +  E + W   Q     GY  +     +  Q +
Sbjct: 3797 WKNVCSQSAERKQRILSIWNLLQSLIKQTAEHKNWLGKQETQLAGY--ERDHKSSGKQKL 3854

Query: 212  DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--VLSSNKKL 269
            +  + +L  +L+ L    V + R LE+    L + TG+  E++ + T     +LS  ++L
Sbjct: 3855 EERQKELRSKLDELDSQSV-NLRHLEQTYAKLTMGTGVEPENIQKLTLPTKVMLSKWRQL 3913

Query: 270  TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL-GASRTGRWSGCVFPPQN 328
            TP+   + +   + ++          EA  S   ++  L+ L  A+   + +G   P   
Sbjct: 3914 TPRCHALLDAIDKDAKVLREFHTAQQEATQSLTAIQKALEQLPSATAEDQQNGKAEPKAV 3973

Query: 329  LPRPSRSHEELDQI 342
            L R      +L   
Sbjct: 3974 LQRLESLERKLQDA 3987


>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
 gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
          Length = 333

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 38  DDHPVELWDCVHD-----PVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDI 88
           D  PV +     +     P+ P+V  +  E  D   +VAHN+ F+ ++L   +    +  
Sbjct: 62  DPGPVWIHGLTSEALEGAPLFPEVAAQLSERLDGRVLVAHNAAFDWSMLAREYARAAITA 121

Query: 89  PIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123
           P+ + +CT+ L++   LP     L+++     +  Q+ 
Sbjct: 122 PVRQRLCTIALSKELRLPLPNHKLESLAAHFGVVQQRA 159


>gi|302339304|ref|YP_003804510.1| hypothetical protein Spirs_2813 [Spirochaeta smaragdinae DSM 11293]
 gi|301636489|gb|ADK81916.1| hypothetical protein Spirs_2813 [Spirochaeta smaragdinae DSM 11293]
          Length = 2081

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 81/241 (33%), Gaps = 36/241 (14%)

Query: 123  MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            +++GK+L     K    +   D       E +R+       D    R+I   +E   S+E
Sbjct: 1181 LKKGKKLSQALYKKVMDQIKAD------PEVYRMSFAEAAQDTEGMRQIQWEIE--HSEE 1232

Query: 183  QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             EL                      N+ +  +  KL++ +E+L   +  ++     L  +
Sbjct: 1233 TEL----------------EKQLKANRQLRRQNEKLNKSVEALNREIDLTNSV---LGDY 1273

Query: 243  LFLETGLH------LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
               + GL        E+  +   +        L+    + +    RA      K+  + +
Sbjct: 1274 KRKQEGLEEAFRSAREEARKGDVESRKQWVSLLSDARKEAYLQTRRAVADTKQKIRDMRD 1333

Query: 297  AMNSDGR-LRGTLQFLG--ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
            A     R ++  ++  G   +   +        + + R +R  +E+ Q    L +    D
Sbjct: 1334 AKAFYERMIKAIMRPAGRSIAYDQQVQIREIQGRYVARFTRREKEMRQAYRKLLSDAGID 1393

Query: 354  P 354
            P
Sbjct: 1394 P 1394


>gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 208

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 33/169 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D   ++          + L   LE+     + H  
Sbjct: 26  IDTETLGLVPRRDRLCV--VQLSPGDGTADIIRIAAGQKEARNLVALLEDPTHQKIFHYG 83

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLAR-------SNGLPSALKAVGEALKLSSQKMEEG 126
            F+  VL   F +        CT + +R        +GL   LK   E L +   K ++ 
Sbjct: 84  RFDIAVLFHTFGVTATP--VFCTKIASRLIRTYTDRHGLKDNLK---EMLDVDVSKAQQS 138

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            +  A             R  P          EY   DV     +  +L
Sbjct: 139 SDWAAE------------RLSPAQ-------LEYAASDVLYLHALRDKL 168


>gi|150398650|ref|YP_001329117.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
 gi|150030165|gb|ABR62282.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
          Length = 208

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 45/164 (27%), Gaps = 23/164 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+    + +CV        D   ++            L   L +     + H  
Sbjct: 26  IDTETLGLVPRRDRLCV--VQLSSGDGTADVIRIAAGQKQAPNLVAMLSDPARQKIFHFG 83

Query: 74  YFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIA 131
            F+  VL   F +   P+        LAR+      L   + E L +   K ++  +  A
Sbjct: 84  RFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKDNLKELLDVDISKQQQSSDWAA 143

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                                      EY   DV     +  +L
Sbjct: 144 DILSPAQ-------------------LEYAASDVLHLHALRDKL 168


>gi|326930556|ref|XP_003211412.1| PREDICTED: Golgin subfamily A member 1-like [Meleagris gallopavo]
          Length = 716

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 26/229 (11%)

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-YCKGD-- 164
           +L    + L+  ++++   KE++       T      ++    +E    F E   + D  
Sbjct: 194 SLSKAEQELEARTRELIHAKEMLQE---ASTESSGLRKDL---QELQEQFLELEARRDEL 247

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER--TKLDQEL 222
           +T  R    ++  L  +EQEL  + Q        + V L +   +  +  +   +L +++
Sbjct: 248 MTAERNAENKITALELREQELQTVIQH-------LSVDLQNMTFEFDERSKLIEQLQEKV 300

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
            SL   L  +   +E ++  L  +  L  + L ET+ Q +      +         NR  
Sbjct: 301 SSLEKKLERNLSGVEHVQELLKEKASLE-QKLDETSQQILTDRMHHVNAVNQLEIQNREL 359

Query: 283 ASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
             +   A   L T  E           L+                 Q L
Sbjct: 360 EQKLQIATEALKTSKEEACEQD-----LKIQKLQMDLESEKRKIQQQVL 403


>gi|228473352|ref|ZP_04058106.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228275254|gb|EEK14052.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 164

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 45  WDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWI--CTLVLAR 101
           +D    P+ P+V KE L    D+ +VAHNS F+   L+                  + A 
Sbjct: 60  YDTEKAPLFPEVWKEILPKIKDLPLVAHNSMFDEGCLREVLAYYALPQHTNPFFCTLRAA 119

Query: 102 SNGLP----SALKAVGEALKLSSQK 122
              LP      L  V        ++
Sbjct: 120 RKSLPQLVNHKLDTVSAYFGFDLKQ 144


>gi|302842961|ref|XP_002953023.1| hypothetical protein VOLCADRAFT_93679 [Volvox carteri f. nagariensis]
 gi|300261734|gb|EFJ45945.1| hypothetical protein VOLCADRAFT_93679 [Volvox carteri f. nagariensis]
          Length = 1646

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 161  CKGDVTVTRE-----IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
             K DV   ++     +  R E L+   QEL   DQ + D+   +D A        V    
Sbjct: 1516 AKEDVEAVQQRTAATLSSRTEELARVLQELEEKDQELEDKSSKLDAAQEQ--LAEVTAAL 1573

Query: 216  TKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
               D EL+     L ++ + L  L   L    G
Sbjct: 1574 QGRDTELKDKDRELEAAGQQLAHLTADLQEAQG 1606


>gi|167648909|ref|YP_001686572.1| 3'-5' exonuclease [Caulobacter sp. K31]
 gi|167351339|gb|ABZ74074.1| 3'-5' exonuclease [Caulobacter sp. K31]
          Length = 205

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 21/152 (13%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIH 91
                 D    +            LK  L +  V  + H   F+  +       +  P++
Sbjct: 40  VQLSSGDGDAHVVRLDRATYDAPNLKRLLTDPSVVKLFHFGRFDIAMFLLHLGVMTAPVY 99

Query: 92  RWICTLVLARSNGLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                  LAR+      LK V   L  +   K+++  +                      
Sbjct: 100 CTKIASKLARTYTDRHGLKDVTRELVGVELSKVQQSSDW---------------GAATLS 144

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            E       Y   DV     + +RL  +  +E
Sbjct: 145 PEQLA----YAASDVLHLHALRERLNAMLVRE 172


>gi|126738420|ref|ZP_01754125.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
 gi|126720219|gb|EBA16925.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
          Length = 204

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 23/171 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CVI       D    +            L   LE+ +   + H  
Sbjct: 22  IDCETMGLNPHRDRLCVIQM--SDGDGNAHIIQVAKGQSEAPNLCRLLEDPETLKLFHFG 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIA 131
            F+   +   F  L  P++       L R+      LK +  E L +   K ++  +   
Sbjct: 80  RFDIAAMYNAFGALSAPVYCTKIASRLVRTYTDRHGLKNLTQELLGIDISKQQQMSD--- 136

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                   E L D              +Y   DV    ++ K L     +E
Sbjct: 137 -----WGAEILTDAQL-----------DYAASDVLHLHKLRKALNKRLERE 171


>gi|237800267|ref|ZP_04588728.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023124|gb|EGI03181.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 377

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 78/272 (28%), Gaps = 36/272 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           L   LEN DV  V H    +  VL      L +P+     T + A    L  ++      
Sbjct: 68  LSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF---DTQLAAAYLNLGFSMGYSRLV 124

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            ++    + +G+       +  +   +                 Y   D     E+F  L
Sbjct: 125 QEVLDIDLPKGETRSDWLQRPLSETQI----------------SYAAEDAVHLAELFAIL 168

Query: 176 EPLSSKEQELWYLDQTINDRGYC---VDV-ALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            P  S ++  W LD            VD   +         + R +L   L  L      
Sbjct: 169 RPRLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQL-AVLRELCAWRER 227

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLK 290
            +R     +  +  E  L     T+      L+  + + P+         +   ++A   
Sbjct: 228 EARARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTASSL 287

Query: 291 LNTL----------VEAMNSDGRLRGTLQFLG 312
                         V+A  S  RLR   Q   
Sbjct: 288 PPEQWPPALPEPLPVDAAGSIKRLRAIGQQYA 319


>gi|302187116|ref|ZP_07263789.1| ribonuclease D [Pseudomonas syringae pv. syringae 642]
          Length = 377

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 79/272 (29%), Gaps = 36/272 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           L   LEN DV  V H    +  VL      L +P+     T + A    L  ++      
Sbjct: 68  LSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF---DTQLAAAYLNLGFSMGYSRLV 124

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            ++    + +G+       +  +   +                 Y   D     E+F  L
Sbjct: 125 QEVLDIDLPKGETRSDWLQRPLSETQI----------------SYAAEDAVHLAELFTIL 168

Query: 176 EPLSSKEQELWYLDQTINDRGYC---VDV-ALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            P  S ++  W LD            VD   +         + R +L   L  L      
Sbjct: 169 RPRLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQL-AVLRELCAWRER 227

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLK 290
            +R     +  +  E  L     T+      L+  + + P+         +   ++A + 
Sbjct: 228 EARARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTASVL 287

Query: 291 LNTL----------VEAMNSDGRLRGTLQFLG 312
                         ++A  S  RLR   Q   
Sbjct: 288 PPEEWPPALPEPLPIDAAGSIKRLRAIGQQYA 319


>gi|50954286|ref|YP_061574.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Leifsonia
           xyli subsp. xyli str. CTCB07]
 gi|50950768|gb|AAT88469.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Leifsonia
           xyli subsp. xyli str. CTCB07]
          Length = 389

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 24/197 (12%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-------TD 65
             DL   G+  Y +   V+ FA       V++    H+ V P +L+E +          D
Sbjct: 49  SADLAASGVGDYRDLGAVLAFA-----ETVDVVTFDHEHVPPAILRELVARGVPVHPGPD 103

Query: 66  VTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
             + A     ++  +++    L +P+  W                               
Sbjct: 104 ALLYAQ----DKIQMRSKLGDLGLPVPDWAAVETSGELAAFLDDHGGRAVVKTARGGYDG 159

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           +G  L+             D       +         +  V+  RE+ + +    S E  
Sbjct: 160 KGVRLV------SDANGADDWFLALAEDGLGGALLV-EELVSFRRELAQLVARRPSGEVV 212

Query: 185 LWYLDQTINDRGYCVDV 201
            W + +T+   G C +V
Sbjct: 213 AWPVVETVQRDGVCAEV 229


>gi|296203635|ref|XP_002748973.1| PREDICTED: microtubule-associated tumor suppressor candidate 2
            [Callithrix jacchus]
          Length = 1771

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 78/243 (32%), Gaps = 19/243 (7%)

Query: 91   HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
             R+      A  NG P          K   Q  E  ++L+ R  K               
Sbjct: 1351 RRYPKQRTAAARNGFPP---------KPDPQAREAERQLVQRL-KERCERQARQLGIAQG 1400

Query: 151  REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                 + G         T+  F++ E    KE+EL      I D       A    L + 
Sbjct: 1401 ELKRAVCGFDAL--AVATQHFFRKNESALVKEKELSVELANIRDE-VAFHTAKCEKLQKE 1457

Query: 211  VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
             +    + + E++ L +        L++L+  L L+    +  L E    ++LS   +  
Sbjct: 1458 KEELERRFEDEVKKLGW---QQQAELQELEERLQLQFEAEMARLQEEHRGQLLSIGCQHQ 1514

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG--RLRGTLQFLGASRTGRWSGCVFPPQN 328
             Q   +  +   A           +  +  D   R++G+ Q          +G  FP Q 
Sbjct: 1515 EQVEDLTASHEAALLEMENNHTVAIAILQDDHDHRVQGSSQPCVQQAGMGGAGRAFPLQ- 1573

Query: 329  LPR 331
            LPR
Sbjct: 1574 LPR 1576


>gi|330900086|gb|EGH31505.1| ribonuclease D [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 377

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 79/272 (29%), Gaps = 36/272 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           L   LEN DV  V H    +  VL      L +P+     T + A    L  ++      
Sbjct: 68  LSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF---DTQLAAAYLNLGFSMGYSRLV 124

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            ++    + +G+       +  +   +                 Y   D     E+F  L
Sbjct: 125 QEVLDIDLPKGETRSDWLQRPLSETQI----------------TYAAEDAVHLAELFTIL 168

Query: 176 EPLSSKEQELWYLDQTINDRGYC---VDV-ALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            P  S ++  W LD            VD   +         + R +L   L  L      
Sbjct: 169 RPRLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQL-AVLRELCAWRER 227

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLK 290
            +R     +  +  E  L     T+      L+  + + P+         +   ++A + 
Sbjct: 228 EARARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTASVL 287

Query: 291 LNTL----------VEAMNSDGRLRGTLQFLG 312
                         ++A  S  RLR   Q   
Sbjct: 288 PPEEWPPALPEPLPIDAAGSIKRLRAIGQQYA 319


>gi|67537178|ref|XP_662363.1| hypothetical protein AN4759.2 [Aspergillus nidulans FGSC A4]
 gi|40741611|gb|EAA60801.1| hypothetical protein AN4759.2 [Aspergillus nidulans FGSC A4]
 gi|259482399|tpe|CBF76846.1| TPA: GDP/GTP exchange factor Sec2p, putative (AFU_orthologue;
           AFUA_3G06430) [Aspergillus nidulans FGSC A4]
          Length = 605

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 46/175 (26%), Gaps = 10/175 (5%)

Query: 186 WYLDQTIN-----DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
             L Q IN     D    V       + +      ++ +Q    +  G +     +++LK
Sbjct: 112 LKLVQAINNQTKLDDTLAVTRQELEQVQEKARALESENEQYWRDIEDGALVKKAEVDQLK 171

Query: 241 TWLFLETGLH-LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
             L  E     L +  +   ++ L +      +         +  R AV K N  + +  
Sbjct: 172 ASLAEEKAQRLLAEKEKKGIEQELETLTAALFEEANKMVAAAKLEREAVEKKNEQLRSQI 231

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            D            +             N+ +               P   +  P
Sbjct: 232 KDTESLLASHQEQLAELKSV----LQVMNISKDDLDGRTAISTAPPSPAGPSQPP 282


>gi|47934612|gb|AAT39744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 254

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 50/160 (31%), Gaps = 24/160 (15%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAF-----ETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           LV  D +G+E R+LA    +   ++       + G D++     R+  ++        R 
Sbjct: 50  LVGCDASGLELRMLAHYMKDDDYVRTVCEGSSKDGTDVHTVN-QRAAGLST-------RD 101

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K    A  Y  G      +   +  + +         +            R + E   
Sbjct: 102 NAKTFIYAFLYGAGDAKIGSIVGGSAKDGSKLKAKFLDQTPA---------LRKLIERVS 152

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           + A +    G   +  +   R +H+ ++ L         +
Sbjct: 153 KQAAKGWVPG--LDGRRIWVRSEHAALNSLLQGAGAIVMK 190


>gi|149201444|ref|ZP_01878419.1| exonuclease, putative [Roseovarius sp. TM1035]
 gi|149145777|gb|EDM33803.1| exonuclease, putative [Roseovarius sp. TM1035]
          Length = 203

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID    G+  + + +CV        D    L            L   LEN DV  + H  
Sbjct: 22  IDCETMGLHPHRDRLCV--VQLSGGDGHAHLVQVSKGQTTAPNLARLLENPDVLKLFHFG 79

Query: 74  YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKA-VGEALKLSSQKMEEGKEL 129
            F+   ++  F  L  P++       L R+      LK  + E L +   K ++  + 
Sbjct: 80  RFDIAAMQNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQELLNIDISKQQQSSDW 137


>gi|289597691|gb|ADD12281.1| TashAT2 [Theileria annulata]
          Length = 276

 Score = 37.4 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
           Q I D G   D+     +    D++   +D + ++     + +   +++L+       G 
Sbjct: 112 QQIEDIGIQTDIQEVEDIVTQTDIQTGSIDTQTDTQEVEDIETQTDIQQLEDIGVQTIGN 171

Query: 250 HLEDL-TETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +              +K   P+  +    R R  +
Sbjct: 172 FSDQPEQPKRKPGRPRKHKPEQPEVPKRKRGRPRKHK 208


>gi|187957252|gb|AAI58099.1| Thyroid hormone receptor interactor 11 [Mus musculus]
          Length = 1976

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 75/240 (31%), Gaps = 27/240 (11%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ--------------ELWYLD---QTINDR 195
            + +       D+ +  ++      L +KEQ              EL  LD   Q     
Sbjct: 451 EYEVIKSTASRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKH 510

Query: 196 GYCVDVALAHT------LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL-FLETG 248
              +   L+        + + +  E     Q    L    ++  + L   K  L   E  
Sbjct: 511 VILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQA 570

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
           L    LT+   +  +        ++ +   +  + +      +    E +++        
Sbjct: 571 LSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQS 630

Query: 309 QFLGASRTGR---WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
           Q  G+SR  +           QNL +     E+L++ +  +   + ++ + L    + VR
Sbjct: 631 QTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVR 690


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.128    0.355 

Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,453,478,458
Number of Sequences: 14124377
Number of extensions: 451318116
Number of successful extensions: 1262359
Number of sequences better than 10.0: 4658
Number of HSP's better than 10.0 without gapping: 5975
Number of HSP's successfully gapped in prelim test: 1341
Number of HSP's that attempted gapping in prelim test: 1226605
Number of HSP's gapped (non-prelim): 13815
length of query: 675
length of database: 4,842,793,630
effective HSP length: 146
effective length of query: 529
effective length of database: 2,780,634,588
effective search space: 1470955697052
effective search space used: 1470955697052
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 85 (37.4 bits)